Citrus Sinensis ID: 022927

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290
Protein Sequence
MTHHDLQNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTGKDNLQVSSDGVNSVTDTFSRLDIDSDKDPKVESVVKRHPVSSVLECKCGMPLCICEAPAPAASTETRPPQMKSSSTTAGQSNPKPKKTENTARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTSV
Secondary Structure (PSIPRED)
ccccccEEEEEEcccccccccccccccHHHHcccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHcHHcEEccccccEEcHHHccEEEEEHHHcEEEEEEEcHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccHccccHHHHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
mthhdlqnLRLISHIRSNLLQHhcrccgrtlchehssdqmtlpqfgihtnVRVCadcfnsssrtgkdnlqvssdgvnsvtdtfsrldidsdkdpkvesvvkrhpvssvleckcgmplciceapapaastetrppqmksssttagqsnpkpkktentarsrgstsnsnfssifnpgqvtngatdkprmeyevnGEGLRDAIKNGDAAAVKKLLSegvdanfcdkqgMSLLHLAALFNRTDIAFILMEsganmdcknaqgespldcapvtLQYKMRQKMeedknnvgsttsv
Flexible Loop (DISEMBL)
mthhdlqnLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSsrtgkdnlqvssdgvnsvtdtfsrldidsdkdpkvesvvkrhpvssvlecKCGMPLCICEAPapaastetrppqmksssttagqsnpkpkktentarsrgstsnsnfssifnpgqvtngatdkpRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRqkmeedknnvgsttsv
Low Complexity Region (SEG)
MTHHDLQNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTGKDNLQVSSDGVNSVTDTFSRLDIDSDKDPKVESVVKRHPVSSVLECKCGMPLCICEAPAPAASTETRPPQMKSSSTTAGQSNPKPKKTENTArsrgstsnsnfssifnPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTSV
Disordered region (IsUnstruct)
*******NLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFN********************************************PVSSVLECKCGMPLCIC*******************************************************************************IKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANM***************************************
Disordered Region (DISOPRED)
*THHDLQNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNS*************************************************ECKCGMPLCICEAPAPAASTET*****************KPKKTENTARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNV****S*
Disordered Region (DISEMBL)
MTHHDLQNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTGKDNLQVSSDGVNSVTDTFSRLDIDSD***********HPVSSVLECKCGMPLCICEAPAP****************************************SNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQK**************
Disordered Region (DISPRO)
***HDLQNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNS*******************************************PVSSVLECKCGMPLCICEAPAPA***************************************************TN****KPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEED**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTHHDLQNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTGKDNLQVSSDGVNSVTDTFSRLDIDSDKDPKVESVVKRHPVSSVLECKCGMPLCICEAPAPAASTETRPPQMKSSSTTAGQSNPKPKKTENTARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	290	2.2.26 [Sep-21-2011]
P40343	622	Vacuolar protein sorting-	yes	no	0.131	0.061	0.552	1e-07
Q755J9	604	Vacuolar protein sorting-	yes	no	0.134	0.064	0.538	3e-07
Q6FQJ1	603	Vacuolar protein sorting-	yes	no	0.134	0.064	0.487	5e-07
P59672	1150	Ankyrin repeat and SAM do	yes	no	0.231	0.058	0.411	2e-06
Q92625	1134	Ankyrin repeat and SAM do	yes	no	0.231	0.059	0.411	2e-06
Q0V8S0	777	Hepatocyte growth factor-	yes	no	0.134	0.050	0.512	2e-06
O14964	777	Hepatocyte growth factor-	no	no	0.158	0.059	0.434	2e-06
Q5ABD9	841	Vacuolar protein sorting-	N/A	no	0.189	0.065	0.418	3e-06
Q99LI8	775	Hepatocyte growth factor-	no	no	0.134	0.050	0.487	4e-06
Q9JJ50	776	Hepatocyte growth factor-	no	no	0.134	0.050	0.487	5e-06

>sp|P40343|VPS27_YEAST Vacuolar protein sorting-associated protein 27 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VPS27 PE=1 SV=3

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 21/38 (55%), Positives = 25/38 (65%)

Query: 21  QHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCF 58
           +HHCR CG   C EHSS+ + LP  GI+  VRVC  CF
Sbjct: 189 KHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVCDSCF 226

Component of the ESCRT-0 complex which is the sorting receptor for ubiquitinated cargo proteins at the multivesicular body (MVB) and recruits ESCRT-I to the MVB outer membrane. Controls exit from the prevacuolar compartment (PVC) in both the forward direction to the vacuole and the return to the Golgi. Allows VPS10 to return to the (trans-Golgi network) TGN from the PVC. Might also function as an alternate adapter in the COPIb clathrin-like coat.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q755J9|VPS27_ASHGO Vacuolar protein sorting-associated protein 27 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=VPS27 PE=3 SV=1

 Score = 56.2 bits (134), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 28/39 (71%)

Query: 21  QHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFN 59
           +HHCR CG   C+EHSS Q+ LP+ GI   VRVC +C++
Sbjct: 194 KHHCRSCGGIFCNEHSSHQLPLPEMGITEPVRVCDNCYD 232

Component of the ESCRT-0 complex which is the sorting receptor for ubiquitinated cargo proteins at the multivesicular body (MVB) and recruits ESCRT-I to the MVB outer membrane.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|Q6FQJ1|VPS27_CANGA Vacuolar protein sorting-associated protein 27 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=VPS27 PE=3 SV=1

 Score = 55.5 bits (132), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 27/39 (69%)

Query: 21  QHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFN 59
           +HHCR CG   C +HSS  + LP  GI+ +VRVC +C++
Sbjct: 189 RHHCRSCGGVFCQDHSSKSIPLPDLGIYDSVRVCDNCYD 227

Component of the ESCRT-0 complex which is the sorting receptor for ubiquitinated cargo proteins at the multivesicular body (MVB) and recruits ESCRT-I to the MVB outer membrane.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

>sp|P59672|ANS1A_MOUSE Ankyrin repeat and SAM domain-containing protein 1A OS=Mus musculus GN=Anks1a PE=1 SV=3

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 1/68 (1%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L  A +NG  A V+ LL  G+D+N+  + G S LH AALF +TD+  IL+ +G +++ K+
Sbjct: 236 LHLAARNGHKAVVQVLLDAGMDSNYQTEMG-SALHEAALFGKTDVVQILLAAGIDVNIKD 294

Query: 256 AQGESPLD 263
            +G + LD
Sbjct: 295 NRGLTALD 302

Regulator of different signaling pathways. Regulates EPHA8 receptor tyrosine kinase signaling to control cell migration and neurite retraction.

Mus musculus (taxid: 10090)

>sp|Q92625|ANS1A_HUMAN Ankyrin repeat and SAM domain-containing protein 1A OS=Homo sapiens GN=ANKS1A PE=1 SV=4

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 1/68 (1%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L  A +NG  A V+ LL  G+D+N+  + G S LH AALF +TD+  IL+ +G +++ K+
Sbjct: 219 LHLAARNGHKAVVQVLLDAGMDSNYQTEMG-SALHEAALFGKTDVVQILLAAGTDVNIKD 277

Query: 256 AQGESPLD 263
             G + LD
Sbjct: 278 NHGLTALD 285

Regulator of different signaling pathways. Regulates EPHA8 receptor tyrosine kinase signaling to control cell migration and neurite retraction.

Homo sapiens (taxid: 9606)

>sp|Q0V8S0|HGS_BOVIN Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Bos taurus GN=HGS PE=2 SV=1

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 25/39 (64%)

Query: 21  QHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFN 59
           +HHCR CG+  C + SS   T+P+FGI   VRVC  CF 
Sbjct: 179 KHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCFE 217

Involved in intracellular signal transduction mediated by cytokines and growth factors. When associated with STAM it suppresses DNA signaling upon stimulation by IL-2 and GM-CSF. Could be a direct effector of PI3-kinase in vesicular pathway via early endosomes and may regulate trafficking to early and late endosomes by recruiting clathrin. May concentrate ubiquitinated receptors within clathrin-coated regions. Involved in down-regulation of receptor tyrosine kinase via multivesicular body (MVBs) when complexed with STAM (ESCRT-0 complex). The ESCRT-0 complex binds ubiquitin and acts as sorting machinery that recognizes ubiquitinated receptors and transfers them to further sequential lysosomal sorting/trafficking processes. May contribute to the efficient recruitment of SMADs to the activin receptor complex. Involved in receptor recycling via its association with the CART complex, a multiprotein complex required for efficient transferrin receptor recycling but not for EGFR degradation.

Bos taurus (taxid: 9913)

>sp|O14964|HGS_HUMAN Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Homo sapiens GN=HGS PE=1 SV=1

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 28/46 (60%)

Query: 21  QHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTGK 66
           +HHCR CG+  C + SS   T+P+FGI   VRVC  C+   +R  +
Sbjct: 179 KHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLNRKAE 224

Involved in intracellular signal transduction mediated by cytokines and growth factors. When associated with STAM, it suppresses DNA signaling upon stimulation by IL-2 and GM-CSF. Could be a direct effector of PI3-kinase in vesicular pathway via early endosomes and may regulate trafficking to early and late endosomes by recruiting clathrin. May concentrate ubiquitinated receptors within clathrin-coated regions. Involved in down-regulation of receptor tyrosine kinase via multivesicular body (MVBs) when complexed with STAM (ESCRT-0 complex). The ESCRT-0 complex binds ubiquitin and acts as sorting machinery that recognizes ubiquitinated receptors and transfers them to further sequential lysosomal sorting/trafficking processes. May contribute to the efficient recruitment of SMADs to the activin receptor complex. Involved in receptor recycling via its association with the CART complex, a multiprotein complex required for efficient transferrin receptor recycling but not for EGFR degradation.

Homo sapiens (taxid: 9606)

>sp|Q5ABD9|VPS27_CANAL Vacuolar protein sorting-associated protein 27 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=VPS27 PE=3 SV=1

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 30/55 (54%)

Query: 21  QHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTGKDNLQVSSDG 75
           +HHCR CG   C  HSS+ + L   GI   VRVC +CF    ++ K +   SS G
Sbjct: 229 KHHCRACGGVFCQTHSSNNIPLVNLGIMEPVRVCDNCFAKYDKSKKHSRNTSSSG 283

Component of the ESCRT-0 complex which is the sorting receptor for ubiquitinated cargo proteins at the multivesicular body (MVB) and recruits ESCRT-I to the MVB outer membrane.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

>sp|Q99LI8|HGS_MOUSE Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Mus musculus GN=Hgs PE=1 SV=2

 Score = 52.0 bits (123), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 25/39 (64%)

Query: 21  QHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFN 59
           +HHCR CG+  C + SS   T+P+FGI   VRVC  C+ 
Sbjct: 179 KHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYE 217

Involved in intracellular signal transduction mediated by cytokines and growth factors. When associated with STAM, it suppresses DNA signaling upon stimulation by IL-2 and GM-CSF. Could be a direct effector of PI3-kinase in vesicular pathway via early endosomes and may regulate trafficking to early and late endosomes by recruiting clathrin. May concentrate ubiquitinated receptors within clathrin-coated regions. Involved in down-regulation of receptor tyrosine kinase via multivesicular body (MVBs) when complexed with STAM (ESCRT-0 complex). The ESCRT-0 complex binds ubiquitin and acts as sorting machinery that recognizes ubiquitinated receptors and transfers them to further sequential lysosomal sorting/trafficking processes. May contribute to the efficient recruitment of SMADs to the activin receptor complex. Involved in receptor recycling via its association with the CART complex, a multiprotein complex required for efficient transferrin receptor recycling but not for EGFR degradation.

Mus musculus (taxid: 10090)

>sp|Q9JJ50|HGS_RAT Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Rattus norvegicus GN=Hgs PE=1 SV=1

 Score = 52.0 bits (123), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 25/39 (64%)

Query: 21  QHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFN 59
           +HHCR CG+  C + SS   T+P+FGI   VRVC  C+ 
Sbjct: 179 KHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYE 217

Involved in intracellular signal transduction mediated by cytokines and growth factors. When associated with STAM, it suppresses DNA signaling upon stimulation by IL-2 and GM-CSF. Could be a direct effector of PI3-kinase in vesicular pathway via early endosomes and may regulate trafficking to early and late endosomes by recruiting clathrin. May concentrate ubiquitinated receptors within clathrin-coated regions. Involved in down-regulation of receptor tyrosine kinase via multivesicular body (MVBs) when complexed with STAM (ESCRT-0 complex). The ESCRT-0 complex binds ubiquitin and acts as sorting machinery that recognizes ubiquitinated receptors and transfers them to further sequential lysosomal sorting/trafficking processes. Involved in receptor recycling via its association with the CART complex, a multiprotein complex required for efficient transferrin receptor recycling but not for EGFR degradation (By similarity). May contribute to the efficient recruitment of SMADs to the activin receptor complex.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	290
224141709	288	predicted protein [Populus trichocarpa]	0.865	0.871	0.702	4e-98
255550253	294	zinc finger protein, putative [Ricinus c	0.855	0.843	0.688	4e-96
225463157	289	PREDICTED: FYVE and coiled-coil domain-c	0.886	0.889	0.653	2e-94
388513021	292	unknown [Medicago truncatula]	0.882	0.876	0.664	4e-92
357479263	292	Protein phosphatase 1 regulatory subunit	0.882	0.876	0.664	4e-92
363808358	291	uncharacterized protein LOC100814367 [Gl	0.879	0.876	0.656	4e-91
356565578	291	PREDICTED: uncharacterized protein LOC10	0.879	0.876	0.648	1e-90
255647942	291	unknown [Glycine max]	0.879	0.876	0.644	4e-90
388513187	289	unknown [Lotus japonicus]	0.889	0.892	0.639	3e-89
388504016	289	unknown [Lotus japonicus]	0.889	0.892	0.635	1e-87

>gi|224141709|ref|XP_002324207.1| predicted protein [Populus trichocarpa] gi|222865641|gb|EEF02772.1| predicted protein [Populus trichocarpa]

 Score =  363 bits (933), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 182/259 (70%), Positives = 212/259 (81%), Gaps = 8/259 (3%)

Query: 21  QHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTGKDNLQVSSDGVNSVT 80
           +HHCRCCGRTLCHEHSS+QM LPQFGI +N RVCADCFN+S+R+ K       DGV+S+T
Sbjct: 28  RHHCRCCGRTLCHEHSSNQMALPQFGILSNARVCADCFNNSTRSEK------VDGVDSIT 81

Query: 81  DTFSRLDIDSDKDPKVESVVKRHPVSSVLECKCGMPLCICEAPAPAASTETRPPQMKSSS 140
           D  SRLDID++K PK E   +    + V+ECKCGMPLCICEAPA  A T+  P Q+K SS
Sbjct: 82  DKVSRLDIDTEKHPKPEPTTQNQSAAGVIECKCGMPLCICEAPA--AKTDPVPKQVKLSS 139

Query: 141 TTAGQSNPKPKKTENTARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAI 200
           T   QSN KPKKT+   ++RGSTS+S  SS+FN GQ+TNG  DKP+M+YEVNGEGLR+AI
Sbjct: 140 TFTSQSNSKPKKTDAVPKNRGSTSSSKPSSVFNHGQITNGGVDKPQMDYEVNGEGLREAI 199

Query: 201 KNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGES 260
           KNGD  AVKKLLSEGVDAN+ DKQGMSLLHLAALFNRTDIAFILM+SGA+M+ KNAQGE+
Sbjct: 200 KNGDTVAVKKLLSEGVDANYRDKQGMSLLHLAALFNRTDIAFILMDSGASMNYKNAQGET 259

Query: 261 PLDCAPVTLQYKMRQKMEE 279
           PLDCAP TLQYKM+QKMEE
Sbjct: 260 PLDCAPATLQYKMKQKMEE 278

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550253|ref|XP_002516177.1| zinc finger protein, putative [Ricinus communis] gi|223544663|gb|EEF46179.1| zinc finger protein, putative [Ricinus communis]

 Score =  357 bits (915), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 172/250 (68%), Positives = 204/250 (81%), Gaps = 2/250 (0%)

Query: 30  TLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTGKDNLQVSSDGVNSVTDTFSRLDID 89
           TLCHEHSS+QM LPQFGI +NVRVCADCFN S+R+G+     SSDG +SVTD FSRLDI 
Sbjct: 37  TLCHEHSSNQMALPQFGILSNVRVCADCFNDSTRSGQTKSHASSDGAHSVTDKFSRLDIG 96

Query: 90  SDKDPKVESVVKRHPVSSVLECKCGMPLCICEAPAPAASTETRPPQMKSSSTTAGQSNPK 149
           ++     E+  +   V+  +ECKCGMPLCICEAPAP A  E  P QMK+ S++  QSNPK
Sbjct: 97  AETYSTTETATQSQSVTGAIECKCGMPLCICEAPAPIA--EAVPLQMKTPSSSMSQSNPK 154

Query: 150 PKKTENTARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVK 209
           PKKT+   R+R S+SN+  SS+FN GQ TNG++D P+M+YEVNGEGLR+AIKNGD AAVK
Sbjct: 155 PKKTDANLRNRVSSSNNKPSSVFNHGQTTNGSSDSPQMDYEVNGEGLREAIKNGDTAAVK 214

Query: 210 KLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTL 269
           KLLSEGVDAN+ DKQG+SLLHLAALFNRTDIAFILMESGA++  KNAQGE+PLDCAP TL
Sbjct: 215 KLLSEGVDANYRDKQGLSLLHLAALFNRTDIAFILMESGASLAYKNAQGETPLDCAPATL 274

Query: 270 QYKMRQKMEE 279
           QYKM++KMEE
Sbjct: 275 QYKMKKKMEE 284

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463157|ref|XP_002268154.1| PREDICTED: FYVE and coiled-coil domain-containing protein 1 isoform 1 [Vitis vinifera] gi|296084844|emb|CBI27726.3| unnamed protein product [Vitis vinifera]

 Score =  351 bits (900), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 170/260 (65%), Positives = 207/260 (79%), Gaps = 3/260 (1%)

Query: 21  QHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTGKDNLQVSSDGVNSVT 80
           +HHCRCCGRTLCHEHSS+QM LPQFG+HT+VRVC+DCFN SSR GK +   S DG+NSV 
Sbjct: 27  RHHCRCCGRTLCHEHSSNQMALPQFGLHTSVRVCSDCFNDSSRLGKVDPVASLDGINSVV 86

Query: 81  DTFSRLDIDSDKDPKV-ESVVKRHPVSSVLECKCGMPLCICEAPAPAASTETRPPQMKSS 139
           D+ + L+I+ D D K  E     +PVS + +CKCGMPLCICE PA  A  ET P Q K+ 
Sbjct: 87  DSVATLNINPDVDLKTGEPTTVHNPVSGISDCKCGMPLCICEVPA--APVETVPLQRKTI 144

Query: 140 STTAGQSNPKPKKTENTARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDA 199
           + +    NPKPKKT+   ++RGSTSNS    + N GQV+N + DKP+M+Y+ NGEGLR+A
Sbjct: 145 AISTTHLNPKPKKTDCNLKNRGSTSNSKHGLVSNLGQVSNSSLDKPQMDYDANGEGLREA 204

Query: 200 IKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGE 259
           IKN D AAVKKLLS+GVDAN+CDKQG+S+LHLAALFN+TDIAFILMESGA+++ KNAQGE
Sbjct: 205 IKNSDTAAVKKLLSQGVDANYCDKQGLSVLHLAALFNQTDIAFILMESGASLEHKNAQGE 264

Query: 260 SPLDCAPVTLQYKMRQKMEE 279
           +PLDCAP TLQYKMR+KMEE
Sbjct: 265 TPLDCAPATLQYKMRKKMEE 284

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513021|gb|AFK44572.1| unknown [Medicago truncatula]

 Score =  343 bits (881), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 172/259 (66%), Positives = 210/259 (81%), Gaps = 3/259 (1%)

Query: 21  QHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTGKDNLQVSSDGVNSVT 80
           +HHCRCCGRTLC EHSSDQM LPQFGI++NVRVCADCFN+S R+GK   Q S+DGVNS+T
Sbjct: 29  RHHCRCCGRTLCSEHSSDQMALPQFGIYSNVRVCADCFNNS-RSGKGVRQTSTDGVNSIT 87

Query: 81  DTFSRLDIDSDKDPKVESVVKRHPVSSVLECKCGMPLCICEAPAPAASTETRPPQMKSSS 140
           D  S LDID++ D K +     +  S V ECKCGMPLCICEAP P++S    P + KS  
Sbjct: 88  DAVSELDIDANVDSKRKPTADNNLASGVKECKCGMPLCICEAPPPSSSAV--PQEKKSIP 145

Query: 141 TTAGQSNPKPKKTENTARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAI 200
                SNPKPKKT+N ++SR S+S + FSS+FNPG VT G +++P+++YEVNGEGLR+AI
Sbjct: 146 VVTAPSNPKPKKTDNASKSRSSSSTNKFSSMFNPGHVTTGTSNRPQIDYEVNGEGLREAI 205

Query: 201 KNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGES 260
           KNGD AAVKKLL+EGVDAN+ DKQG+SLLHLAA+FN+TDI FILM+SGAN++ KNAQGE+
Sbjct: 206 KNGDIAAVKKLLNEGVDANYRDKQGLSLLHLAAVFNQTDIVFILMDSGANLEYKNAQGET 265

Query: 261 PLDCAPVTLQYKMRQKMEE 279
           PLDCAP TLQYKM+ KM+E
Sbjct: 266 PLDCAPATLQYKMKMKMQE 284

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479263|ref|XP_003609917.1| Protein phosphatase 1 regulatory subunit [Medicago truncatula] gi|355510972|gb|AES92114.1| Protein phosphatase 1 regulatory subunit [Medicago truncatula]

 Score =  343 bits (881), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 172/259 (66%), Positives = 210/259 (81%), Gaps = 3/259 (1%)

Query: 21  QHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTGKDNLQVSSDGVNSVT 80
           +HHCRCCGRTLC EHSSDQM LPQFGI++NVRVCADCFN+S R+GK   Q S+DGVNS+T
Sbjct: 29  RHHCRCCGRTLCSEHSSDQMALPQFGIYSNVRVCADCFNNS-RSGKGVRQTSTDGVNSIT 87

Query: 81  DTFSRLDIDSDKDPKVESVVKRHPVSSVLECKCGMPLCICEAPAPAASTETRPPQMKSSS 140
           D  S LDID++ D K +     +  S V ECKCGMPLCICEAP P++S    P + KS  
Sbjct: 88  DAVSELDIDANVDSKRKPTADNNLASGVKECKCGMPLCICEAPPPSSSAV--PQEKKSIP 145

Query: 141 TTAGQSNPKPKKTENTARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAI 200
                SNPKPKKT+N ++SR S+S + FSS+FNPG VT G +++P+++YEVNGEGLR+AI
Sbjct: 146 VVTAPSNPKPKKTDNASKSRSSSSTNKFSSMFNPGHVTTGTSNRPQIDYEVNGEGLREAI 205

Query: 201 KNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGES 260
           KNGD AAVKKLL+EGVDAN+ DKQG+SLLHLAA+FN+TDI FILM+SGAN++ KNAQGE+
Sbjct: 206 KNGDIAAVKKLLNEGVDANYRDKQGLSLLHLAAVFNQTDIVFILMDSGANLEYKNAQGET 265

Query: 261 PLDCAPVTLQYKMRQKMEE 279
           PLDCAP TLQYKM+ KM+E
Sbjct: 266 PLDCAPATLQYKMKMKMQE 284

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808358|ref|NP_001241998.1| uncharacterized protein LOC100814367 [Glycine max] gi|255636154|gb|ACU18419.1| unknown [Glycine max]

 Score =  340 bits (872), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 170/259 (65%), Positives = 208/259 (80%), Gaps = 4/259 (1%)

Query: 21  QHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTGKDNLQVSSDGVNSVT 80
           +HH R CGRTLC+EHSSDQM LPQFGI++NVRVCADCFN+S R+GKD  Q SSDGVNSVT
Sbjct: 29  RHHYRSCGRTLCNEHSSDQMALPQFGIYSNVRVCADCFNNS-RSGKDEPQTSSDGVNSVT 87

Query: 81  DTFSRLDIDSDKDPKVESVVKRHPVSSVLECKCGMPLCICEAPAPAASTETRPPQMKSSS 140
           DT S+LDI+++ D K     +   V  + ECKCGMPLCICEAP P++      PQ K + 
Sbjct: 88  DTISKLDINTNVDSKSIPTAENKLVLGIKECKCGMPLCICEAPTPSSDAL---PQQKPNP 144

Query: 141 TTAGQSNPKPKKTENTARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAI 200
             A  SNPK KKT+   ++R S+S S FSS+FN G VTNG +D+P+++YEV GEGLR+AI
Sbjct: 145 VIAAPSNPKSKKTDTVPKNRSSSSTSKFSSMFNVGHVTNGTSDRPQIDYEVTGEGLREAI 204

Query: 201 KNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGES 260
           KNGD AAVKKLL+EGVDAN+ DKQG+SLLHLAA+FN+TDI FILM+SGA+++ KNAQGE+
Sbjct: 205 KNGDIAAVKKLLNEGVDANYRDKQGLSLLHLAAVFNQTDIVFILMDSGASLEYKNAQGET 264

Query: 261 PLDCAPVTLQYKMRQKMEE 279
           P+DCAP TLQYKMR+KMEE
Sbjct: 265 PIDCAPATLQYKMRKKMEE 283

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565578|ref|XP_003551016.1| PREDICTED: uncharacterized protein LOC100804827 [Glycine max]

 Score =  338 bits (868), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 168/259 (64%), Positives = 207/259 (79%), Gaps = 4/259 (1%)

Query: 21  QHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTGKDNLQVSSDGVNSVT 80
           +HHCR CGRTLC+EHSS+QM LPQFG+++NVRVCADCFN+  R+GKD  Q SSDGVNSVT
Sbjct: 29  RHHCRSCGRTLCNEHSSNQMALPQFGLYSNVRVCADCFNNL-RSGKDEPQTSSDGVNSVT 87

Query: 81  DTFSRLDIDSDKDPKVESVVKRHPVSSVLECKCGMPLCICEAPAPAASTETRPPQMKSSS 140
           DT S+LDI+++ D K     +   +S + ECKCGMPLCICEAP P++      PQ K + 
Sbjct: 88  DTISKLDINANVDSKSILTAETKLLSGIKECKCGMPLCICEAPTPSSDAF---PQQKPNP 144

Query: 141 TTAGQSNPKPKKTENTARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAI 200
             A  SNPKPKKT+   + R S S S FSS+FN G VTNG +D+P+++YEV GEGLR+AI
Sbjct: 145 VIAAPSNPKPKKTDTVPKIRSSISTSKFSSMFNVGHVTNGTSDRPQIDYEVTGEGLREAI 204

Query: 201 KNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGES 260
           KN D AAVKKLL+EGVDAN+ DKQG+SLLHLAA+FN+TDI FILM+SGA+++ +NAQGE+
Sbjct: 205 KNSDVAAVKKLLNEGVDANYRDKQGLSLLHLAAVFNQTDIVFILMDSGASLEYRNAQGET 264

Query: 261 PLDCAPVTLQYKMRQKMEE 279
           PLDCAP TLQYKMR+KMEE
Sbjct: 265 PLDCAPATLQYKMRKKMEE 283

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255647942|gb|ACU24428.1| unknown [Glycine max]

 Score =  337 bits (863), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 167/259 (64%), Positives = 207/259 (79%), Gaps = 4/259 (1%)

Query: 21  QHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTGKDNLQVSSDGVNSVT 80
           +HHCR CGRTLC+EHSS+QM LPQFG+++NVRVCADCFN+  R+GKD  Q SSDGVNSVT
Sbjct: 29  RHHCRSCGRTLCNEHSSNQMALPQFGLYSNVRVCADCFNNL-RSGKDEPQTSSDGVNSVT 87

Query: 81  DTFSRLDIDSDKDPKVESVVKRHPVSSVLECKCGMPLCICEAPAPAASTETRPPQMKSSS 140
           DT S+LDI+++ D K     +   +S + ECKCGMPLCICEAP P++      PQ K + 
Sbjct: 88  DTISKLDINANVDSKSILTAETKLLSGIKECKCGMPLCICEAPTPSSDAF---PQQKPNP 144

Query: 141 TTAGQSNPKPKKTENTARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAI 200
             A  SNPKPKKT+   + R S S S FSS+FN G+VTNG +D+P+++YEV GEGLR+AI
Sbjct: 145 VIAAPSNPKPKKTDTVPKIRSSISTSKFSSMFNVGRVTNGTSDRPQIDYEVTGEGLREAI 204

Query: 201 KNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGES 260
           KN D AAVKKLL+EGVDAN+ DKQG+SLLHLAA+FN+TDI FILM+SGA+++ +NAQGE+
Sbjct: 205 KNSDVAAVKKLLNEGVDANYRDKQGLSLLHLAAVFNQTDIVFILMDSGASLEYRNAQGET 264

Query: 261 PLDCAPVTLQYKMRQKMEE 279
           PLDCAP  LQYKMR+KMEE
Sbjct: 265 PLDCAPAPLQYKMRKKMEE 283

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513187|gb|AFK44655.1| unknown [Lotus japonicus]

 Score =  334 bits (856), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 170/266 (63%), Positives = 209/266 (78%), Gaps = 8/266 (3%)

Query: 21  QHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTGKDNLQVSSDGVNSVT 80
           +HHCR CGRTLC+EHSSDQM LPQFG+++NVRVCADCFN+S    ++    SSDGVN++T
Sbjct: 27  RHHCRSCGRTLCNEHSSDQMALPQFGLYSNVRVCADCFNNSR--SQEVPHASSDGVNNIT 84

Query: 81  DTFSRLDIDSDKDPKVESVVKRHPVSSVLECKCGMPLCICEAPAPAASTETRPPQMKSSS 140
           DT S+LDID + D K       +PVS + ECKCGMPLCICEAPAP  S++  P Q K S 
Sbjct: 85  DTISKLDIDGNVDSKTLPSADNNPVSGIKECKCGMPLCICEAPAP--SSDALPQQKKISP 142

Query: 141 TTAGQSNPKPKKTENTARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAI 200
                SNPKP+KT+  +++R S+S + FSS FN G VTN A+ +P+ +YEV+GEGLR+AI
Sbjct: 143 AMTASSNPKPRKTDTVSKNRSSSSTNKFSSPFNLGHVTNVASARPQTDYEVSGEGLREAI 202

Query: 201 KNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGES 260
           KNGD AAVKKLL+EGVDAN+ DKQG+SLLHLAA+FN+TDI FILM+SGA++  KNAQGE+
Sbjct: 203 KNGDIAAVKKLLNEGVDANYRDKQGLSLLHLAAVFNQTDIVFILMDSGASLKYKNAQGET 262

Query: 261 PLDCAPVTLQYKMRQKMEE----DKN 282
           PLDCAP TLQYKMR+KMEE    DKN
Sbjct: 263 PLDCAPATLQYKMRKKMEEGGVMDKN 288

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504016|gb|AFK40074.1| unknown [Lotus japonicus]

 Score =  328 bits (842), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 169/266 (63%), Positives = 207/266 (77%), Gaps = 8/266 (3%)

Query: 21  QHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTGKDNLQVSSDGVNSVT 80
           +HHCR CGRTLC+EHSSDQM LPQFG+++NVRVCADCFN+S    ++    SSDGVN++T
Sbjct: 27  RHHCRSCGRTLCNEHSSDQMALPQFGLYSNVRVCADCFNNSR--SQEVPHASSDGVNNIT 84

Query: 81  DTFSRLDIDSDKDPKVESVVKRHPVSSVLECKCGMPLCICEAPAPAASTETRPPQMKSSS 140
           DT S+LDID + D K       +PVS + ECKCGMPLCICEAPAP  S++  P Q K S 
Sbjct: 85  DTISKLDIDGNVDSKTLPSADNNPVSGIKECKCGMPLCICEAPAP--SSDALPQQKKISP 142

Query: 141 TTAGQSNPKPKKTENTARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAI 200
                SNPKP+KT+  +++R S+S + FSS FN G VTN A+ +P+ +YEV+GEG R+AI
Sbjct: 143 AMTASSNPKPRKTDTVSKNRSSSSTNKFSSPFNLGHVTNVASARPQTDYEVSGEGPREAI 202

Query: 201 KNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGES 260
           KNGD AAVKKLL+EGVDAN  DKQG+SLLHLAA+FN+TDI FILM+SGA++  KNAQGE+
Sbjct: 203 KNGDIAAVKKLLNEGVDANHRDKQGLSLLHLAAVFNQTDIVFILMDSGASLKYKNAQGEA 262

Query: 261 PLDCAPVTLQYKMRQKMEE----DKN 282
           PLDCAP TLQYKMR+KMEE    DKN
Sbjct: 263 PLDCAPATLQYKMRKKMEEGGVMDKN 288

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	290
TAIR|locus:2057746	190	AT2G26210 [Arabidopsis thalian	0.551	0.842	0.526	1.7e-41
DICTYBASE|DDB_G0280923	93	DDB_G0280923 "ankyrin repeat-c	0.268	0.838	0.407	9.5e-10
UNIPROTKB|Q8EID4	105	SO_0908 "Ankyrin domain protei	0.255	0.704	0.368	7.9e-07
TIGR_CMR|SO_0908	105	SO_0908 "conserved domain prot	0.255	0.704	0.368	7.9e-07
ZFIN|ZDB-GENE-041024-4	410	wdfy1 "WD repeat and FYVE doma	0.241	0.170	0.351	2.9e-06
MGI|MGI:1916549	290	Asb9 "ankyrin repeat and SOCS	0.272	0.272	0.369	5.4e-06
UNIPROTKB|Q83EV7	131	CBU_0201 "Ankyrin repeat prote	0.248	0.549	0.351	1.3e-05
TIGR_CMR|CBU_0201	131	CBU_0201 "ankyrin repeat famil	0.248	0.549	0.351	1.3e-05
SGD|S000005289	622	VPS27 "Endosomal protein that	0.131	0.061	0.552	2.1e-05
UNIPROTKB|Q5ZIZ1	172	PPP1R12A "Protein phosphatase	0.279	0.470	0.304	2.7e-05

TAIR|locus:2057746 AT2G26210 [Arabidopsis thaliana (taxid:3702)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 91/173 (52%), Positives = 116/173 (67%)

Query:   106 SSVLECKCGMPLCICEAPAPAASTETRPPQMKSSSTTAGQSNPKPKKTENTAXXXXXXXX 165
             S  +ECKCGMPLCIC AP P ++ +  PP     +T A    P+  K+E +A        
Sbjct:    29 SETMECKCGMPLCICVAP-PKSTDKPNPP-----ATIAPVVLPQ-LKSEASAKSKGSTSS 81

Query:   166 XXXXXXXXPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQG 225
                          N   D P+ +YE +GEGLR+AIKNGD+A  KKLL EGVDAN+ D+QG
Sbjct:    82 SNARSAL------NAGLDTPQRDYEASGEGLREAIKNGDSAGAKKLLKEGVDANYRDRQG 135

Query:   226 MSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKME 278
             MS+LHLA LFN+TDIA +LM+ GA+++ KNAQGE+PLDCAP TLQYKMR+KM+
Sbjct:   136 MSVLHLAVLFNQTDIALMLMDHGASLEYKNAQGETPLDCAPATLQYKMREKMK 188

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0280923 DDB_G0280923 "ankyrin repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 144 (55.7 bits), Expect = 9.5e-10, P = 9.5e-10
 Identities = 33/81 (40%), Positives = 50/81 (61%)

Query:   192 NGEGLRDAIKNGDAAAVKKLLSEGVDA--NFCDKQGMSLLHLAALFNRTDIAFILMESGA 249
             NG  LRDA K+G+   VK L++EG  +  ++ D+ G + LH+AA+F   +I  IL+++GA
Sbjct:     4 NGAKLRDAAKSGNEELVKSLIAEGPSSILDYKDRSGFTPLHMAAMFGHQNICTILLQAGA 63

Query:   250 NMDCKNAQGESPLDCAP-VTL 269
             + D K    E+  D A  VTL
Sbjct:    64 SNDIKTVDDETACDVAKTVTL 84

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q8EID4 SO_0908 "Ankyrin domain protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 118 (46.6 bits), Expect = 7.9e-07, P = 7.9e-07
 Identities = 28/76 (36%), Positives = 46/76 (60%)

Query:   199 AIKNGDAAAVKKLLSEGVDANFCDKQGMS-LLHLAALFNRTDIAFILMESGANMDCKNAQ 257
             A+K  D  AVK++++ G D    D+ GM+ LLH   L    +I  +L+++GA+++  NAQ
Sbjct:     8 AVKAKDTLAVKRIIANGADLECVDENGMTALLHACEL-QSFEILKLLVDAGADVNHPNAQ 66

Query:   258 GESPLDCAPVTLQYKM 273
             G  PLD A    +++M
Sbjct:    67 GYQPLDIAYWQGEFRM 82

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_0908 SO_0908 "conserved domain protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 118 (46.6 bits), Expect = 7.9e-07, P = 7.9e-07
 Identities = 28/76 (36%), Positives = 46/76 (60%)

Query:   199 AIKNGDAAAVKKLLSEGVDANFCDKQGMS-LLHLAALFNRTDIAFILMESGANMDCKNAQ 257
             A+K  D  AVK++++ G D    D+ GM+ LLH   L    +I  +L+++GA+++  NAQ
Sbjct:     8 AVKAKDTLAVKRIIANGADLECVDENGMTALLHACEL-QSFEILKLLVDAGADVNHPNAQ 66

Query:   258 GESPLDCAPVTLQYKM 273
             G  PLD A    +++M
Sbjct:    67 GYQPLDIAYWQGEFRM 82

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-041024-4 wdfy1 "WD repeat and FYVE domain containing 1" [Danio rerio (taxid:7955)]

 Score = 134 (52.2 bits), Expect = 2.9e-06, P = 2.9e-06
 Identities = 26/74 (35%), Positives = 41/74 (55%)

Query:    19 LLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTGKDNLQVSSDGVNS 78
             L QHHCR CG+ +C + SS + T P  G    VR+C DCFN+     +  L    +G +S
Sbjct:   309 LRQHHCRKCGKAICGKCSSKRSTYPIMGFEFQVRMCDDCFNTIKEDDRTPLATFHEGKHS 368

Query:    79 VTDTFSRLDIDSDK 92
             +    + +D+D ++
Sbjct:   369 I----AHMDMDPNR 378

GO:0046872 "metal ion binding" evidence=IEA

MGI|MGI:1916549 Asb9 "ankyrin repeat and SOCS box-containing 9" [Mus musculus (taxid:10090)]

 Score = 129 (50.5 bits), Expect = 5.4e-06, P = 5.4e-06
 Identities = 31/84 (36%), Positives = 46/84 (54%)

Query:   187 MEYEVN--GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGM-SLLHLAALFNRTDIAFI 243
             ++Y ++  G  L  A KN   A  KKLL  GV  N    +G+ S LH+ A  +  ++  +
Sbjct:   156 IDYNISHLGTPLYVACKNQQVACAKKLLESGVSVN--QGKGLDSPLHVVARMSSVELVHL 213

Query:   244 LMESGANMDCKNAQGESPLDCAPV 267
             LM+ GAN   KNA G+ P+D  P+
Sbjct:   214 LMDFGANAQAKNADGKRPVDLVPL 237

GO:0005515 "protein binding" evidence=IPI

GO:0005739 "mitochondrion" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0045732 "positive regulation of protein catabolic process" evidence=ISO

UNIPROTKB|Q83EV7 CBU_0201 "Ankyrin repeat protein" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 107 (42.7 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 26/74 (35%), Positives = 42/74 (56%)

Query:   190 EVNGEGLRDAIKNGDAAAVKKLLSEGVDAN-FCDKQGMSLLHLAALFNRTDIAFILMESG 248
             ++N E L DA+       VK+LL  G D N F D+  +  LH AAL+N  D+  +L+ +G
Sbjct:    30 KINKE-LLDAVIGNHFHTVKRLLENGADPNYFEDEAQIRPLHFAALYNSPDVVPLLIMAG 88

Query:   249 ANMDCKNAQGESPL 262
             A+++      ++PL
Sbjct:    89 ADLNATTEYDDTPL 102

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CBU_0201 CBU_0201 "ankyrin repeat family protein" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 107 (42.7 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 26/74 (35%), Positives = 42/74 (56%)

Query:   190 EVNGEGLRDAIKNGDAAAVKKLLSEGVDAN-FCDKQGMSLLHLAALFNRTDIAFILMESG 248
             ++N E L DA+       VK+LL  G D N F D+  +  LH AAL+N  D+  +L+ +G
Sbjct:    30 KINKE-LLDAVIGNHFHTVKRLLENGADPNYFEDEAQIRPLHFAALYNSPDVVPLLIMAG 88

Query:   249 ANMDCKNAQGESPL 262
             A+++      ++PL
Sbjct:    89 ADLNATTEYDDTPL 102

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

SGD|S000005289 VPS27 "Endosomal protein that forms a complex with Hse1p" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 129 (50.5 bits), Expect = 2.1e-05, P = 2.1e-05
 Identities = 21/38 (55%), Positives = 25/38 (65%)

Query:    21 QHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCF 58
             +HHCR CG   C EHSS+ + LP  GI+  VRVC  CF
Sbjct:   189 KHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVCDSCF 226

GO:0033565 "ESCRT-0 complex" evidence=IPI

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IDA

GO:0006623 "protein targeting to vacuole" evidence=IMP;IPI

GO:0005768 "endosome" evidence=IEA;IDA

GO:0045053 "protein retention in Golgi apparatus" evidence=IMP

GO:0043130 "ubiquitin binding" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0045324 "late endosome to vacuole transport" evidence=IMP

UNIPROTKB|Q5ZIZ1 PPP1R12A "Protein phosphatase 1 regulatory subunit 12A" [Gallus gallus (taxid:9031)]

 Score = 115 (45.5 bits), Expect = 2.7e-05, P = 2.7e-05
 Identities = 25/82 (30%), Positives = 46/82 (56%)

Query:   184 KPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFI 243
             K +++++ +G     A  +GD   V +LL  G D N+ +  G++ LH A + +  D+   
Sbjct:    33 KTKVKFD-DGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKF 91

Query:   244 LMESGANMDCKNAQGESPLDCA 265
             L+E+GAN++  + +G  PL  A
Sbjct:    92 LVENGANINQPDNEGWIPLHAA 113

GO:0000776 "kinetochore" evidence=IEA

GO:0004857 "enzyme inhibitor activity" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0006470 "protein dephosphorylation" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0019208 "phosphatase regulator activity" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030155 "regulation of cell adhesion" evidence=IEA

GO:0035507 "regulation of myosin-light-chain-phosphatase activity" evidence=IEA

GO:0043292 "contractile fiber" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0046822 "regulation of nucleocytoplasmic transport" evidence=IEA

GO:0051297 "centrosome organization" evidence=IEA

GO:0071889 "14-3-3 protein binding" evidence=IEA

GO:0072357 "PTW/PP1 phosphatase complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	290
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-15
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	6e-15
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	9e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-11
smart00064	68	smart00064, FYVE, Protein present in Fab1, YOTB, V	7e-10
cd00065	57	cd00065, FYVE, FYVE domain; Zinc-binding domain; t	2e-08
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	6e-08
pfam01363	68	pfam01363, FYVE, FYVE zinc finger	8e-08
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-07
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-07
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	2e-06
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-06
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	6e-05
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-04
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	2e-04
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	3e-04
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	5e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	7e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	0.001
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	0.001
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.002
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.002
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	0.003

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 71.3 bits (175), Expect = 1e-15
 Identities = 26/67 (38%), Positives = 36/67 (53%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A  NG    VK LL  G D N  D  G + LHLAA     +I  +L+E GA+++ ++  G
Sbjct: 14  AASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDG 73

Query: 259 ESPLDCA 265
            +PL  A
Sbjct: 74  NTPLHLA 80

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 69.7 bits (171), Expect = 6e-15
 Identities = 28/70 (40%), Positives = 40/70 (57%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L  A KNG    VK LL +G D N  DK G + LHLAA     D+  +L++ GA+++ ++
Sbjct: 44  LHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARD 103

Query: 256 AQGESPLDCA 265
             G +PL  A
Sbjct: 104 KDGRTPLHLA 113

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 62.7 bits (153), Expect = 9e-13
 Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A KNG+   VK LL +G D N  D    + LHLAA     +I  +L+E GA+++ K+  G
Sbjct: 4   AAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNAKDKDG 61

Query: 259 ESPLDCA 265
            + L  A
Sbjct: 62  NTALHLA 68

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 58.4 bits (142), Expect = 3e-11
 Identities = 24/57 (42%), Positives = 34/57 (59%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           A +NG+   VK LL  G D N  DK G + LHLAA     +I  +L+E GA+++ K+
Sbjct: 35  AARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|214499 smart00064, FYVE, Protein present in Fab1, YOTB, Vac1, and EEA1

 Score = 54.0 bits (130), Expect = 7e-10
 Identities = 20/43 (46%), Positives = 27/43 (62%)

Query: 21 QHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSR 63
          +HHCR CGR  C + SS +  LP+ GI   VRVC DC+ + + 
Sbjct: 26 RHHCRNCGRIFCSKCSSKKAPLPKLGIERPVRVCDDCYENLNG 68

The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PHD finger and the RING finger. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. The FYVE finger functions in the membrane recruitment of cytosolic proteins by binding to phosphatidylinositol 3-phosphate (PI3P), which is prominent on endosomes. The R+HHC+XCG motif is critical for PI3P binding. Length = 68

>gnl|CDD|238022 cd00065, FYVE, FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 18/38 (47%), Positives = 24/38 (63%)

Query: 21 QHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCF 58
          +HHCR CGR  C + SS+++ LP  G    VRVC  C+
Sbjct: 18 RHHCRNCGRIFCSKCSSNRIPLPSMGGGKPVRVCDSCY 55

Length = 57

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 48.1 bits (115), Expect = 6e-08
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 211 LLSEGVDANFC-DKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 265
           LL  G       D  G + LHLAA +   ++   L++ G +++ +++ G + LD A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|216454 pfam01363, FYVE, FYVE zinc finger

 Score = 48.2 bits (115), Expect = 8e-08
 Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 22 HHCRCCGRTLCHEHSSDQMT-LPQFGIHTNVRVCADCFN 59
          HHCR CG+  C   SS ++  LP+ GI+  VRVC DC++
Sbjct: 26 HHCRNCGKVFCSSCSSKKIALLPKLGINKPVRVCDDCYD 64

The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn++ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. We have included members which do not conserve these histidine residues but are clearly related. Length = 68

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 17/47 (36%), Positives = 29/47 (61%)

Query: 219 NFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 265
           N  D+ G + LHLAA     ++  +L+E+GA+++ K+  G +PL  A
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLA 47

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 30/86 (34%), Positives = 43/86 (50%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           AIK GD  ++K L   G D N  D  G   +H+A   N  DI  +L+E GA  + K+  G
Sbjct: 131 AIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNG 190

Query: 259 ESPLDCAPVTLQYKMRQKMEEDKNNV 284
           ESPL  A     Y   + + +  N++
Sbjct: 191 ESPLHNAAEYGDYACIKLLIDHGNHI 216

Length = 434

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 21/64 (32%), Positives = 34/64 (53%)

Query: 202 NGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESP 261
           +GDA   + LL+ G D N  D  G + LH+A       +  +L+E GA+    +  G++P
Sbjct: 92  SGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTP 151

Query: 262 LDCA 265
           L+ A
Sbjct: 152 LELA 155

Length = 664

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 47.1 bits (111), Expect = 2e-06
 Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 8/75 (10%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFI-----LMESGANMD- 252
           A   GD   VK LL+ G D N  D  G + LHLAAL        I     L+E+GA++D 
Sbjct: 80  AASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDV 139

Query: 253 --CKNAQGESPLDCA 265
              ++  G +PL  A
Sbjct: 140 NNLRDEDGNTPLHWA 154

Length = 235

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 43.0 bits (102), Expect = 3e-06
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFIL 244
           L  A  +G    VK LL +GVD N  D+ G + LH+AA     ++  +L
Sbjct: 5   LHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 19/47 (40%), Positives = 26/47 (55%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILM 245
           A +NG+   VK LL  G D N  DK G + LHLAA     ++  +L+
Sbjct: 80  AARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 39.5 bits (93), Expect = 6e-05
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 225 GMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 265
           G + LH AA+  R ++   L+E G +++  +  G + L  A
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIA 41

Length = 54

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 196 LRDAIKNGDAAAVKKLLSEG--VDANFC-DKQGMSLLHLAALFNRTDIAFILMESGANMD 252
           L      G+    K LL  G  +D N   D+ G + LH AAL    DI  +L+E+GA+ +
Sbjct: 115 LNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPN 174

Query: 253 CKNAQGESPLD 263
            +N+ G + LD
Sbjct: 175 SRNSYGVTALD 185

Length = 235

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 5/86 (5%)

Query: 193 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 252
           G+ L  A K  D  A+K+LL +G++ +  D QG + L +A   +  D+  +L+ +GA++D
Sbjct: 623 GDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVD 682

Query: 253 CKNAQGESPLDCAPVTLQYKMRQKME 278
             N       D +P  L+ ++ QK E
Sbjct: 683 KANTDD----DFSPTELR-ELLQKRE 703

Length = 823

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDAN-FCDKQGMSLLHLAALFNRTDIAFILMESGANMDCK 254
           L DA++ GD  AV++LL  G  A+    K GM+ LHLA +  + DI  +L+  GA+ D  
Sbjct: 72  LHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIP 131

Query: 255 NAQGESPLDCAPVTLQYKM 273
           N    SPL  A +    K 
Sbjct: 132 NTDKFSPLHLAVMMGDIKG 150

Length = 413

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 41.4 bits (97), Expect = 5e-04
 Identities = 18/60 (30%), Positives = 34/60 (56%)

Query: 203 GDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPL 262
           G+AA +++LL   +D +  D +G + LH+AA     D   +L++   N+  ++A G + L
Sbjct: 536 GNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTAL 595

Length = 823

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 36.0 bits (84), Expect = 7e-04
 Identities = 10/32 (31%), Positives = 21/32 (65%)

Query: 224 QGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
            G + LHLAA     ++  +L+E+GA+++ ++
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 39.9 bits (93), Expect = 0.001
 Identities = 25/67 (37%), Positives = 34/67 (50%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L  A +N D    + LLS G + N  DK   S LH A       I  IL+E+GA+ D ++
Sbjct: 172 LHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARD 231

Query: 256 AQGESPL 262
             G +PL
Sbjct: 232 KCGNTPL 238

Length = 477

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 21/55 (38%), Positives = 28/55 (50%)

Query: 208 VKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPL 262
           V  LLS GV  N  D  G + LH A   N  +    L++ GAN +  N  G++PL
Sbjct: 175 VNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPL 229

Length = 422

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 16/37 (43%), Positives = 19/37 (51%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLA 232
           L  A K G    V+ LL  GVD N  D  G++ L LA
Sbjct: 20  LHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 39.3 bits (91), Expect = 0.002
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 201 KNG-DAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR-TDIAFILMESGANMDCKNAQG 258
           KNG D   ++ L+  G D N  D+  ++ LH A+  +R  DI   L+E GAN++ ++   
Sbjct: 316 KNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCD 375

Query: 259 ESPLDCAPV 267
           ++P+  A V
Sbjct: 376 KTPIHYAAV 384

Length = 682

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 208 VKKLLSEGVDANFCDKQGMSLLH--LAALFNRTDIAFILMESGANMDCKNAQGESPLDC 264
           +K L+  G D N  DK G + LH  L+       +  +L+  GA+++  +  G +PL  
Sbjct: 100 IKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAV 158

Length = 471

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	290
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.91
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.9
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.86
PHA02743	166	Viral ankyrin protein; Provisional	99.85
PHA02791	284	ankyrin-like protein; Provisional	99.85
PHA02859	209	ankyrin repeat protein; Provisional	99.84
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.84
PHA02791	284	ankyrin-like protein; Provisional	99.83
PHA02875	413	ankyrin repeat protein; Provisional	99.83
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.83
KOG0508	615	consensus Ankyrin repeat protein [General function	99.83
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.82
PHA02878	477	ankyrin repeat protein; Provisional	99.82
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.8
PHA03095	471	ankyrin-like protein; Provisional	99.8
PHA02875	413	ankyrin repeat protein; Provisional	99.8
PHA02874	434	ankyrin repeat protein; Provisional	99.8
PHA02878	477	ankyrin repeat protein; Provisional	99.79
PHA02798	489	ankyrin-like protein; Provisional	99.79
PHA02859	209	ankyrin repeat protein; Provisional	99.79
PHA02946	446	ankyin-like protein; Provisional	99.79
PHA02736	154	Viral ankyrin protein; Provisional	99.78
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.78
PHA02884	300	ankyrin repeat protein; Provisional	99.78
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.78
PHA02741	169	hypothetical protein; Provisional	99.78
PHA02795	437	ankyrin-like protein; Provisional	99.78
PHA02874	434	ankyrin repeat protein; Provisional	99.78
PHA03100	480	ankyrin repeat protein; Provisional	99.78
PHA03100	480	ankyrin repeat protein; Provisional	99.77
PHA02741	169	hypothetical protein; Provisional	99.76
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.76
PHA02743	166	Viral ankyrin protein; Provisional	99.76
PHA02884	300	ankyrin repeat protein; Provisional	99.75
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.75
PHA02795	437	ankyrin-like protein; Provisional	99.75
PHA03095	471	ankyrin-like protein; Provisional	99.75
KOG0508	615	consensus Ankyrin repeat protein [General function	99.74
PHA02989	494	ankyrin repeat protein; Provisional	99.74
PHA02989	494	ankyrin repeat protein; Provisional	99.74
PHA02876	682	ankyrin repeat protein; Provisional	99.74
PHA02730	672	ankyrin-like protein; Provisional	99.74
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.73
PF01363	69	FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc f	99.73
PHA02798	489	ankyrin-like protein; Provisional	99.72
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.72
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.71
PHA02917	661	ankyrin-like protein; Provisional	99.71
KOG0510	929	consensus Ankyrin repeat protein [General function	99.71
PHA02946	446	ankyin-like protein; Provisional	99.7
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.7
PHA02917	661	ankyrin-like protein; Provisional	99.7
smart00064	68	FYVE Protein present in Fab1, YOTB, Vac1, and EEA1	99.69
KOG0514	452	consensus Ankyrin repeat protein [General function	99.69
PHA02876	682	ankyrin repeat protein; Provisional	99.68
KOG0514	452	consensus Ankyrin repeat protein [General function	99.66
PHA02736	154	Viral ankyrin protein; Provisional	99.65
KOG1818	634	consensus Membrane trafficking and cell signaling	99.65
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.65
PHA02792	631	ankyrin-like protein; Provisional	99.65
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.64
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.63
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.63
KOG0510	929	consensus Ankyrin repeat protein [General function	99.63
PHA02792	631	ankyrin-like protein; Provisional	99.62
PHA02730	672	ankyrin-like protein; Provisional	99.62
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.62
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.61
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.61
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.6
cd00065	57	FYVE FYVE domain; Zinc-binding domain; targets pro	99.59
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.57
KOG1819	990	consensus FYVE finger-containing proteins [General	99.57
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.56
KOG1729	288	consensus FYVE finger containing protein [General	99.55
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.54
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.53
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.52
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.51
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.51
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.5
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.48
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.47
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.46
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.45
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.44
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.44
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.42
PTZ00303	1374	phosphatidylinositol kinase; Provisional	99.41
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.37
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.34
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.32
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.31
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	99.15
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.14
KOG1841	1287	consensus Smad anchor for receptor activation [Def	99.09
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.08
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.07
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	99.05
PF13606	30	Ank_3: Ankyrin repeat	99.04
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.01
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.98
PF13606	30	Ank_3: Ankyrin repeat	98.98
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.96
KOG0522	560	consensus Ankyrin repeat protein [General function	98.94
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.92
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.92
KOG1842	505	consensus FYVE finger-containing protein [General	98.89
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.87
KOG0511	516	consensus Ankyrin repeat protein [General function	98.72
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.64
KOG1843	473	consensus Uncharacterized conserved protein [Funct	98.56
KOG2384	223	consensus Major histocompatibility complex protein	98.55
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.55
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.55
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.31
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.3
KOG4424	623	consensus Predicted Rho/Rac guanine nucleotide exc	98.29
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.29
KOG0511	516	consensus Ankyrin repeat protein [General function	98.25
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.15
KOG0522	560	consensus Ankyrin repeat protein [General function	98.1
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.1
KOG1811	1141	consensus Predicted Zn2+-binding protein, contains	98.06
KOG0230	1598	consensus Phosphatidylinositol-4-phosphate 5-kinas	98.03
KOG2384	223	consensus Major histocompatibility complex protein	97.93
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.75
KOG2505	591	consensus Ankyrin repeat protein [General function	97.51
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.46
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.37
KOG0230	1598	consensus Phosphatidylinositol-4-phosphate 5-kinas	97.19
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.07
PF02318	118	FYVE_2: FYVE-type zinc finger; InterPro: IPR003315	96.8
KOG2505	591	consensus Ankyrin repeat protein [General function	96.4
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.38
PF07975	51	C1_4: TFIIH C1-like domain; InterPro: IPR004595 Al	95.0
KOG1729	288	consensus FYVE finger containing protein [General	92.5
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	92.31
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	90.83
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	90.35
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	90.27
KOG1841	1287	consensus Smad anchor for receptor activation [Def	89.9
smart00154	39	ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C	86.12
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	85.91
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	85.5
PF00569	46	ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc	84.6
smart00291	44	ZnF_ZZ Zinc-binding domain, present in Dystrophin,	84.09
KOG0993	542	consensus Rab5 GTPase effector Rabaptin-5 [Intrace	83.96
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	82.42
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	81.21

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=1.8e-24  Score=169.94  Aligned_cols=122  Identities=26%  Similarity=0.323  Sum_probs=69.4

Q ss_pred             CCCCCccccccc-CCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHC-CCCCcccccCCCcHHHHHHHcCCH
Q 022927          161 GSTSNSNFSSIF-NPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSE-GVDANFCDKQGMSLLHLAALFNRT  238 (290)
Q Consensus       161 ~s~~~~~~~~Ll-~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~-g~~vn~~d~~g~TpLh~A~~~g~~  238 (290)
                      +-+..+++.+|+ +.+..++..++.+|+       |||.|+..|+.++|+.|+.+ |+|+|..+..|.|+||||+-.|+.
T Consensus        47 S~g~~eiv~fLlsq~nv~~ddkDdaGWt-------Plhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~  119 (226)
T KOG4412|consen   47 SFGHVEIVYFLLSQPNVKPDDKDDAGWT-------PLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRL  119 (226)
T ss_pred             ecCchhHHHHHHhcCCCCCCCccccCCc-------hhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChh
Confidence            334445555555 334444444443333       56666666666666666655 566666666666666666666666


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          239 DIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       239 ~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      +|+++|+++|+.|+++|..|.||||.|+..|..+++++|+..||.+|.+|+
T Consensus       120 eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk  170 (226)
T KOG4412|consen  120 EIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDK  170 (226)
T ss_pred             hHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccc
Confidence            666666666666666666666666666666666666666666666655554

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=2.5e-24  Score=169.10  Aligned_cols=126  Identities=20%  Similarity=0.237  Sum_probs=117.4

Q ss_pred             ccCCCCCCCcccccccCC-CCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHc
Q 022927          157 ARSRGSTSNSNFSSIFNP-GQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALF  235 (290)
Q Consensus       157 ~~~~~s~~~~~~~~Ll~~-g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~  235 (290)
                      ...++.++.++++.|+.. |++++..+..+.+       +||||+..|.++++++|+++|+.++.+|.+|.||||.|+.-
T Consensus        77 hia~s~g~~evVk~Ll~r~~advna~tn~G~T-------~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAav  149 (226)
T KOG4412|consen   77 HIAASNGNDEVVKELLNRSGADVNATTNGGQT-------CLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAV  149 (226)
T ss_pred             hhhhhcCcHHHHHHHhcCCCCCcceecCCCcc-------eehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhc
Confidence            334667788899999988 9999998877665       89999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          236 NRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       236 g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      |.++++++|+.+|+.+|.+|..|+||||.|...|+.+...+|+++||+++..|+
T Consensus       150 Gklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edk  203 (226)
T KOG4412|consen  150 GKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDK  203 (226)
T ss_pred             cchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhccceeeccc
Confidence            999999999999999999999999999999989999999999999999998875

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.86  E-value=2.8e-21  Score=140.23  Aligned_cols=89  Identities=28%  Similarity=0.419  Sum_probs=83.8

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHH
Q 022927          196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQ  275 (290)
Q Consensus       196 Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~  275 (290)
                      ||+|+..|+.+++++|++.+.+++.    |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~   76 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK   76 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            7999999999999999999988877    899999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCCCCC
Q 022927          276 KMEEDKNNVGSTT  288 (290)
Q Consensus       276 ~Ll~~GAdin~~~  288 (290)
                      +|+++|++++.+|
T Consensus        77 ~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   77 LLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHTTT-TTSS-
T ss_pred             HHHHcCCCCCCcC
Confidence            9999999999886

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.85  E-value=4.4e-21  Score=155.53  Aligned_cols=117  Identities=21%  Similarity=0.172  Sum_probs=103.9

Q ss_pred             cccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHH---HHHHHHHCCCCCcccc-cCCCcHHHHHHHcCCHHHH
Q 022927          166 SNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAA---AVKKLLSEGVDANFCD-KQGMSLLHLAALFNRTDIA  241 (290)
Q Consensus       166 ~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~---~v~~Ll~~g~~vn~~d-~~g~TpLh~A~~~g~~~iv  241 (290)
                      +++++|++.|..++..+..+++       |||+|+..|+.+   ++++|++.|+++|.+| ..|.||||+|+..++.+++
T Consensus        38 ~~~~~l~~~g~~~~~~d~~g~t-------~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv  110 (166)
T PHA02743         38 EVAPFISGDGHLLHRYDHHGRQ-------CTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELA  110 (166)
T ss_pred             HHHHHHhhcchhhhccCCCCCc-------HHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHH
Confidence            3445677788887776666555       999999998865   4899999999999998 5899999999999999999


Q ss_pred             HHHHH-CCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          242 FILME-SGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       242 ~~Ll~-~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      ++|++ .|++++.+|..|+||||+|+..++.+++++|+++||+++..+.
T Consensus       111 ~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~  159 (166)
T PHA02743        111 EWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLS  159 (166)
T ss_pred             HHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccc
Confidence            99995 7999999999999999999999999999999999999998764

>PHA02791 ankyrin-like protein; Provisional

Probab=99.85  E-value=6.9e-21  Score=166.49  Aligned_cols=122  Identities=16%  Similarity=0.063  Sum_probs=83.7

Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccc-cCCCcHHHHHHHcCCH
Q 022927          160 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCD-KQGMSLLHLAALFNRT  238 (290)
Q Consensus       160 ~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d-~~g~TpLh~A~~~g~~  238 (290)
                      ...+..+++++|+..|++++..+..++      .||||+|+..|+.+++++||+++.+.  .| ..|.||||+|+..|+.
T Consensus       102 a~~g~~eivk~Ll~~gadin~~~~~g~------~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~  173 (284)
T PHA02791        102 VDSGNMQTVKLFVKKNWRLMFYGKTGW------KTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHV  173 (284)
T ss_pred             HHcCCHHHHHHHHHCCCCcCccCCCCC------cHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHcCCH
Confidence            344445555555555555544333322      14666666666666666666665432  12 2467888888888888


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCh-hhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          239 DIAFILMESGANMDCKNAQGESP-LDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       239 ~iv~~Ll~~Ga~in~~d~~G~Tp-L~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      +++++||++|+++|.+|..|.|| ||+|+..|+.+++++|+++|||+|++|.
T Consensus       174 eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~  225 (284)
T PHA02791        174 DMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNL  225 (284)
T ss_pred             HHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcc
Confidence            88888888888888888888876 8888888888888888888888887763

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.84  E-value=1.8e-20  Score=157.63  Aligned_cols=120  Identities=17%  Similarity=0.162  Sum_probs=106.5

Q ss_pred             CCCcccccccCCCCCCCCCCC-CCCccccccchHHHHHHHc---CCHHHHHHHHHCCCCCcccccCCCcHHHHHHH--cC
Q 022927          163 TSNSNFSSIFNPGQVTNGATD-KPRMEYEVNGEGLRDAIKN---GDAAAVKKLLSEGVDANFCDKQGMSLLHLAAL--FN  236 (290)
Q Consensus       163 ~~~~~~~~Ll~~g~~~~~~~~-~~~~~~~~~~t~Lh~A~~~---g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~--~g  236 (290)
                      ++.+++++|++.|++++..+. .+.       ||||+|+..   ++.+++++|+++|+++|.+|..|.||||+|+.  .+
T Consensus        64 ~~~eiv~~Ll~~gadvn~~~~~~g~-------TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~  136 (209)
T PHA02859         64 VNVEILKFLIENGADVNFKTRDNNL-------SALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNV  136 (209)
T ss_pred             CCHHHHHHHHHCCCCCCccCCCCCC-------CHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccC
Confidence            456889999999999998763 344       499998764   47999999999999999999999999999876  46


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCChhhh-hhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          237 RTDIAFILMESGANMDCKNAQGESPLDC-APVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       237 ~~~iv~~Ll~~Ga~in~~d~~G~TpL~~-A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      +.+++++|+++|++++.+|..|.||||. |+..++.+++++|+++|+|++++|.
T Consensus       137 ~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~  190 (209)
T PHA02859        137 RINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNK  190 (209)
T ss_pred             CHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCC
Confidence            8999999999999999999999999995 5668899999999999999998874

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.84  E-value=1.1e-20  Score=173.58  Aligned_cols=123  Identities=20%  Similarity=0.199  Sum_probs=85.1

Q ss_pred             CCCCCCcccccccCC-CCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccc-cCCCcHHHHHHHcCC
Q 022927          160 RGSTSNSNFSSIFNP-GQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCD-KQGMSLLHLAALFNR  237 (290)
Q Consensus       160 ~~s~~~~~~~~Ll~~-g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d-~~g~TpLh~A~~~g~  237 (290)
                      ..-+..+.++.|++. |.+++..|..+.+       +||||+.+++++++++||++|+++|..+ ..+.||||||+++|+
T Consensus        52 ~q~G~l~~v~~lve~~g~~v~~~D~~g~t-------lLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~  124 (600)
T KOG0509|consen   52 TQYGELETVKELVESEGESVNNPDREGVT-------LLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGH  124 (600)
T ss_pred             hhcchHHHHHHHHhhcCcCCCCCCcCCcc-------ceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCc
Confidence            445555666666666 6666666554443       6777777777777777777777777766 566677777777777


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          238 TDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       238 ~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      +.++++|+++|||++.+|.+|.||||+|++.|+.-+|-+||.+|+|+|.+|.
T Consensus       125 ~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~  176 (600)
T KOG0509|consen  125 ISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDN  176 (600)
T ss_pred             HHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCC
Confidence            7777777777777777777777777777777777777777777777776653

>PHA02791 ankyrin-like protein; Provisional

Probab=99.83  E-value=2.6e-20  Score=162.81  Aligned_cols=115  Identities=17%  Similarity=0.125  Sum_probs=80.8

Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHH
Q 022927          160 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD  239 (290)
Q Consensus       160 ~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~  239 (290)
                      ...+..+++++|++.|++++..+         +.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+
T Consensus        38 a~~g~~eiv~~Ll~~ga~~n~~d---------~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~e  108 (284)
T PHA02791         38 IADNNVRLVCTLLNAGALKNLLE---------NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQ  108 (284)
T ss_pred             HHcCCHHHHHHHHHCcCCCcCCC---------CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            44555566677777776655432         235777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHCCCCCCCCCCCCC-ChhhhhhccCCHHHHHHHHhCCCC
Q 022927          240 IAFILMESGANMDCKNAQGE-SPLDCAPVTLQYKMRQKMEEDKNN  283 (290)
Q Consensus       240 iv~~Ll~~Ga~in~~d~~G~-TpL~~A~~~g~~~iv~~Ll~~GAd  283 (290)
                      ++++|+++|++++.++..|+ ||||+|+..|+.+++++|+++|++
T Consensus       109 ivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~  153 (284)
T PHA02791        109 TVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS  153 (284)
T ss_pred             HHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCc
Confidence            77777777777777776664 677777777777777777777654

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.83  E-value=3.3e-20  Score=171.62  Aligned_cols=98  Identities=19%  Similarity=0.190  Sum_probs=88.8

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCC
Q 022927          191 VNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQ  270 (290)
Q Consensus       191 ~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~  270 (290)
                      .|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus       101 ~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~  180 (413)
T PHA02875        101 DGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGD  180 (413)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCC
Confidence            35679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCC
Q 022927          271 YKMRQKMEEDKNNVGSTT  288 (290)
Q Consensus       271 ~~iv~~Ll~~GAdin~~~  288 (290)
                      .+++++|+++||+++..+
T Consensus       181 ~eiv~~Ll~~ga~~n~~~  198 (413)
T PHA02875        181 IAICKMLLDSGANIDYFG  198 (413)
T ss_pred             HHHHHHHHhCCCCCCcCC
Confidence            999999999999988765

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.83  E-value=3.2e-20  Score=150.25  Aligned_cols=99  Identities=24%  Similarity=0.202  Sum_probs=94.8

Q ss_pred             cccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccC
Q 022927          190 EVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTL  269 (290)
Q Consensus       190 ~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g  269 (290)
                      +.|.|||+||+.+|++.+|++||+.|+|++...++..++|.+|...|..+|+++||+++.|+|..|.+|-|||-+|++.|
T Consensus       158 e~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgn  237 (296)
T KOG0502|consen  158 EFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGN  237 (296)
T ss_pred             ccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCC
Confidence            45666999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCCCCCC
Q 022927          270 QYKMRQKMEEDKNNVGSTT  288 (290)
Q Consensus       270 ~~~iv~~Ll~~GAdin~~~  288 (290)
                      |.++++.||+.|||++..+
T Consensus       238 hvkcve~Ll~sGAd~t~e~  256 (296)
T KOG0502|consen  238 HVKCVESLLNSGADVTQED  256 (296)
T ss_pred             hHHHHHHHHhcCCCccccc
Confidence            9999999999999998765

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.83  E-value=3.6e-21  Score=170.87  Aligned_cols=120  Identities=22%  Similarity=0.307  Sum_probs=112.3

Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHH
Q 022927          160 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD  239 (290)
Q Consensus       160 ~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~  239 (290)
                      +..+..++++.|+..|+++|....-..+       ||..||.-|++++|++|+++|+|+++.|..|.|.||+|+..|+.+
T Consensus        92 saAGHl~vVk~L~~~ga~VN~tT~TNSt-------PLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~  164 (615)
T KOG0508|consen   92 SAAGHLEVVKLLLRRGASVNDTTRTNST-------PLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVD  164 (615)
T ss_pred             hccCcHHHHHHHHHhcCccccccccCCc-------cHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchH
Confidence            4566788999999999999987765554       899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCC
Q 022927          240 IAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGS  286 (290)
Q Consensus       240 iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~  286 (290)
                      |+++|++.|||+|.++..|+|+||.|++.|+.+|+++|+.+|+.++.
T Consensus       165 I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~  211 (615)
T KOG0508|consen  165 IAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDV  211 (615)
T ss_pred             HHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeee
Confidence            99999999999999999999999999999999999999999997754

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.82  E-value=1.7e-20  Score=172.52  Aligned_cols=123  Identities=25%  Similarity=0.307  Sum_probs=113.7

Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHH
Q 022927          160 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD  239 (290)
Q Consensus       160 ~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~  239 (290)
                      +-....+++++|+++|+++|...-.      .+.||||||+++|++.+|++|+++|||++.+|.+|.++||+|+.+|+.-
T Consensus        86 AiNNrl~v~r~li~~gadvn~~gG~------l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~  159 (600)
T KOG0509|consen   86 AINNRLDVARYLISHGADVNAIGGV------LGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTA  159 (600)
T ss_pred             HHcCcHHHHHHHHHcCCCccccCCC------CCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchH
Confidence            5566778889999999999987632      2335999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCC
Q 022927          240 IAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT  288 (290)
Q Consensus       240 iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~  288 (290)
                      ++-+||.+|+|+|.+|.+|+||||+|+.+|+...++.||+.|++++.+|
T Consensus       160 ~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d  208 (600)
T KOG0509|consen  160 LVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTD  208 (600)
T ss_pred             HHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccc
Confidence            9999999999999999999999999999999888999999999998887

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.82  E-value=4.4e-20  Score=173.87  Aligned_cols=116  Identities=26%  Similarity=0.301  Sum_probs=97.1

Q ss_pred             cccccccCCCCCCCCCCCC-CCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHH
Q 022927          166 SNFSSIFNPGQVTNGATDK-PRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFIL  244 (290)
Q Consensus       166 ~~~~~Ll~~g~~~~~~~~~-~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~L  244 (290)
                      +++++|++.|++++..+.. +.       ||||+|+..|+.+++++|+++|+++|..|..|+||||+|+..++.+++++|
T Consensus       148 ~iv~~Ll~~gadin~~~~~~g~-------tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~L  220 (477)
T PHA02878        148 EITKLLLSYGADINMKDRHKGN-------TALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHIL  220 (477)
T ss_pred             HHHHHHHHcCCCCCccCCCCCC-------CHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHH
Confidence            4778888888888877655 44       488888888888888888888888888888888888888888888888888


Q ss_pred             HHCCCCCCCCCCCCCChhhhhhcc-CCHHHHHHHHhCCCCCCCCC
Q 022927          245 MESGANMDCKNAQGESPLDCAPVT-LQYKMRQKMEEDKNNVGSTT  288 (290)
Q Consensus       245 l~~Ga~in~~d~~G~TpL~~A~~~-g~~~iv~~Ll~~GAdin~~~  288 (290)
                      +++|++++.+|..|+||||+|+.. ++.+++++|+++|+++|..+
T Consensus       221 l~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~  265 (477)
T PHA02878        221 LENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKS  265 (477)
T ss_pred             HHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccC
Confidence            888888888888888888888864 68888888888888888765

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.80  E-value=9.4e-20  Score=181.60  Aligned_cols=127  Identities=18%  Similarity=0.180  Sum_probs=112.0

Q ss_pred             cccCCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHH-
Q 022927          156 TARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAAL-  234 (290)
Q Consensus       156 ~~~~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~-  234 (290)
                      ....+..++...++.|++.|++++..+..+.+       |||+|+..|+.+++++|+++|+++|.+|.+|+||||+|+. 
T Consensus       529 L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~T-------pLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~  601 (823)
T PLN03192        529 LLTVASTGNAALLEELLKAKLDPDIGDSKGRT-------PLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISA  601 (823)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCC-------HHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHh
Confidence            33445677888999999999999988776655       9999999999999999999999999999999999886654 


Q ss_pred             ------------------------------cCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCC
Q 022927          235 ------------------------------FNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNV  284 (290)
Q Consensus       235 ------------------------------~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdi  284 (290)
                                                    .|+.+++++|+++|+++|.+|.+|+||||+|+..|+.+++++|+++|||+
T Consensus       602 g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv  681 (823)
T PLN03192        602 KHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADV  681 (823)
T ss_pred             CCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCC
Confidence                                          45556677788899999999999999999999999999999999999999


Q ss_pred             CCCCC
Q 022927          285 GSTTS  289 (290)
Q Consensus       285 n~~~~  289 (290)
                      +..|.
T Consensus       682 ~~~~~  686 (823)
T PLN03192        682 DKANT  686 (823)
T ss_pred             CCCCC
Confidence            98764

>PHA03095 ankyrin-like protein; Provisional

Probab=99.80  E-value=1.9e-19  Score=169.07  Aligned_cols=123  Identities=19%  Similarity=0.263  Sum_probs=108.4

Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcC---CHHHHHHHHHCCCCCcccccCCCcHHHHHHHcC
Q 022927          160 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNG---DAAAVKKLLSEGVDANFCDKQGMSLLHLAALFN  236 (290)
Q Consensus       160 ~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g---~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g  236 (290)
                      ....+.+.+++|++.|++++..+..+.+       |||+|+..+   +.+++++|+++|+++|.+|..|+||||+|+..+
T Consensus        22 ~~~~~~~~v~~Ll~~ga~vn~~~~~g~t-------~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~   94 (471)
T PHA03095         22 ASNVTVEEVRRLLAAGADVNFRGEYGKT-------PLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNA   94 (471)
T ss_pred             CCCCCHHHHHHHHHcCCCcccCCCCCCC-------HHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Confidence            4455667889999999999887766555       899999988   899999999999999999999999999999999


Q ss_pred             -CHHHHHHHHHCCCCCCCCCCCCCChhhhhh--ccCCHHHHHHHHhCCCCCCCCCC
Q 022927          237 -RTDIAFILMESGANMDCKNAQGESPLDCAP--VTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       237 -~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~--~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                       ..+++++|+++|++++.+|..|+||||+|+  ..++.+++++|+++|++++..|.
T Consensus        95 ~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~  150 (471)
T PHA03095         95 TTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDL  150 (471)
T ss_pred             CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCC
Confidence             599999999999999999999999999999  56688999999999999988764

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.80  E-value=1.6e-19  Score=167.04  Aligned_cols=122  Identities=16%  Similarity=0.125  Sum_probs=112.3

Q ss_pred             CCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCH
Q 022927          159 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRT  238 (290)
Q Consensus       159 ~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~  238 (290)
                      ....+..+++++|++.|++++..+..+.       ||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus       109 A~~~~~~~iv~~Ll~~gad~~~~~~~g~-------tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~  181 (413)
T PHA02875        109 ATILKKLDIMKLLIARGADPDIPNTDKF-------SPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDI  181 (413)
T ss_pred             HHHhCCHHHHHHHHhCCCCCCCCCCCCC-------CHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            3456678899999999999988776555       499999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCC-ChhhhhhccCCHHHHHHHHhCCCCCCCC
Q 022927          239 DIAFILMESGANMDCKNAQGE-SPLDCAPVTLQYKMRQKMEEDKNNVGST  287 (290)
Q Consensus       239 ~iv~~Ll~~Ga~in~~d~~G~-TpL~~A~~~g~~~iv~~Ll~~GAdin~~  287 (290)
                      +++++|+++|++++..+..|. ||||+|+..|+.+++++|+++|||+|..
T Consensus       182 eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~  231 (413)
T PHA02875        182 AICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIM  231 (413)
T ss_pred             HHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchH
Confidence            999999999999999998875 8899999999999999999999999875

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.80  E-value=2.6e-19  Score=166.69  Aligned_cols=118  Identities=29%  Similarity=0.359  Sum_probs=107.5

Q ss_pred             CcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHH
Q 022927          165 NSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFIL  244 (290)
Q Consensus       165 ~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~L  244 (290)
                      .+.++.|++.|++++..+..+.+       |||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|
T Consensus       104 ~~~i~~ll~~g~d~n~~~~~g~T-------~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~L  176 (434)
T PHA02874        104 KDMIKTILDCGIDVNIKDAELKT-------FLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLL  176 (434)
T ss_pred             HHHHHHHHHCcCCCCCCCCCCcc-------HHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHH
Confidence            35678888888888877665554       99999999999999999999999999999999999999999999999999


Q ss_pred             HHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          245 MESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       245 l~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      +++|++++..|..|+||||+|+..|+.+++++|+++|++++..+.
T Consensus       177 l~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~  221 (434)
T PHA02874        177 LEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCK  221 (434)
T ss_pred             HHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCC
Confidence            999999999999999999999999999999999999999887653

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.79  E-value=2.5e-19  Score=168.68  Aligned_cols=125  Identities=20%  Similarity=0.240  Sum_probs=112.8

Q ss_pred             cccCCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHc
Q 022927          156 TARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALF  235 (290)
Q Consensus       156 ~~~~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~  235 (290)
                      ....+..+..+++++|++.|++++..+..+.+       |||+|+..|+.+++++|++.|+++|.+|..|+||||+|+..
T Consensus       172 Lh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~t-------pLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~  244 (477)
T PHA02878        172 LHYATENKDQRLTELLLSYGANVNIPDKTNNS-------PLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGY  244 (477)
T ss_pred             HHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCC-------HHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHh
Confidence            33445667888999999999999887766655       99999999999999999999999999999999999999975


Q ss_pred             -CCHHHHHHHHHCCCCCCCCCC-CCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          236 -NRTDIAFILMESGANMDCKNA-QGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       236 -g~~~iv~~Ll~~Ga~in~~d~-~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                       ++.+++++|+++|+++|.++. .|+||||+|  .++.+++++|+++|||+|+.|.
T Consensus       245 ~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~  298 (477)
T PHA02878        245 CKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNS  298 (477)
T ss_pred             cCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCC
Confidence             789999999999999999986 799999999  5688999999999999999874

>PHA02798 ankyrin-like protein; Provisional

Probab=99.79  E-value=2.4e-19  Score=169.26  Aligned_cols=120  Identities=19%  Similarity=0.205  Sum_probs=109.0

Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHc-----CCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcC
Q 022927          162 STSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKN-----GDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFN  236 (290)
Q Consensus       162 s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~-----g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g  236 (290)
                      ..+.+++++|++.|++++..+..+.+       |||+|+..     +..+++++|+++|+|+|.+|..|+||||+|+..+
T Consensus        48 ~~~~~iv~~Ll~~Gadvn~~d~~g~T-------pL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~  120 (489)
T PHA02798         48 SPSTDIVKLFINLGANVNGLDNEYST-------PLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNG  120 (489)
T ss_pred             CCCHHHHHHHHHCCCCCCCCCCCCCC-------hHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcC
Confidence            34678899999999999988876665       89998764     6789999999999999999999999999999875


Q ss_pred             ---CHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCC---HHHHHHHHhCCCCCCCCC
Q 022927          237 ---RTDIAFILMESGANMDCKNAQGESPLDCAPVTLQ---YKMRQKMEEDKNNVGSTT  288 (290)
Q Consensus       237 ---~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~---~~iv~~Ll~~GAdin~~~  288 (290)
                         +.+++++|+++|++++.+|..|.||||+|+..++   .+++++|+++|+|++..+
T Consensus       121 ~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~  178 (489)
T PHA02798        121 YINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHN  178 (489)
T ss_pred             CcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCccccc
Confidence               7899999999999999999999999999999888   999999999999998764

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.79  E-value=4.4e-19  Score=149.13  Aligned_cols=121  Identities=16%  Similarity=0.221  Sum_probs=101.7

Q ss_pred             CCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcC--CHHHHHHHHHCCCCCcccc-cCCCcHHHHHHHc
Q 022927          159 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNG--DAAAVKKLLSEGVDANFCD-KQGMSLLHLAALF  235 (290)
Q Consensus       159 ~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g--~~~~v~~Ll~~g~~vn~~d-~~g~TpLh~A~~~  235 (290)
                      ....++...++.|+..   ++..+.       .|.||||+|+..+  +.+++++|+++|+++|.++ ..|+||||+|+..
T Consensus        28 A~~~~~~~~vk~Li~~---~n~~~~-------~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~   97 (209)
T PHA02859         28 YVEKDDIEGVKKWIKF---VNDCND-------LYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSF   97 (209)
T ss_pred             HHHhCcHHHHHHHHHh---hhccCc-------cCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHh
Confidence            3456677778888764   233333       3456999999854  8999999999999999997 5899999998764


Q ss_pred             ---CCHHHHHHHHHCCCCCCCCCCCCCChhhhhhc--cCCHHHHHHHHhCCCCCCCCCC
Q 022927          236 ---NRTDIAFILMESGANMDCKNAQGESPLDCAPV--TLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       236 ---g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~--~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                         ++.+++++|+++|+++|.+|..|.||||+|+.  .++.+++++|+++|++++.+|.
T Consensus        98 ~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~  156 (209)
T PHA02859         98 NKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDF  156 (209)
T ss_pred             CccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccC
Confidence               47999999999999999999999999999875  5689999999999999998874

>PHA02946 ankyin-like protein; Provisional

Probab=99.79  E-value=5.9e-19  Score=164.28  Aligned_cols=118  Identities=21%  Similarity=0.222  Sum_probs=97.6

Q ss_pred             CCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCC--HHHH
Q 022927          164 SNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR--TDIA  241 (290)
Q Consensus       164 ~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~--~~iv  241 (290)
                      ..+++++|++.|++++..+..+.+       |||+|+..|+.++|++||++|+++|.+|..|+||||+|+..++  .+++
T Consensus        51 ~~~iv~~Ll~~Gadvn~~d~~G~T-------pLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v  123 (446)
T PHA02946         51 DERFVEELLHRGYSPNETDDDGNY-------PLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERI  123 (446)
T ss_pred             CHHHHHHHHHCcCCCCccCCCCCC-------HHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHH
Confidence            446789999999999888776665       9999999999999999999999999999999999999987654  7888


Q ss_pred             HHHHHCCCCCCC-CCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          242 FILMESGANMDC-KNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       242 ~~Ll~~Ga~in~-~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      ++|+++|++++. .|..|.|||| |+..++.+++++|+++|++++++|+
T Consensus       124 ~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~  171 (446)
T PHA02946        124 NLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDK  171 (446)
T ss_pred             HHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCC
Confidence            999999998885 5777888886 4455777777777777777776653

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.78  E-value=3.5e-19  Score=142.63  Aligned_cols=96  Identities=21%  Similarity=0.169  Sum_probs=89.1

Q ss_pred             ccchHHHHHHHcCCH---HHHHHHHHCCCCCcccc-cCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCChhhhh
Q 022927          191 VNGEGLRDAIKNGDA---AAVKKLLSEGVDANFCD-KQGMSLLHLAALFNRTDIAFILMES-GANMDCKNAQGESPLDCA  265 (290)
Q Consensus       191 ~~~t~Lh~A~~~g~~---~~v~~Ll~~g~~vn~~d-~~g~TpLh~A~~~g~~~iv~~Ll~~-Ga~in~~d~~G~TpL~~A  265 (290)
                      .|.|+||+|+..|+.   +++++|++.|+++|.+| ..|+||||+|+..++.+++++|+.+ |++++.+|..|+||||+|
T Consensus        54 ~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A  133 (154)
T PHA02736         54 HGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVA  133 (154)
T ss_pred             CCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHH
Confidence            456699999999987   46889999999999998 4999999999999999999999985 999999999999999999


Q ss_pred             hccCCHHHHHHHHhCCCCCCC
Q 022927          266 PVTLQYKMRQKMEEDKNNVGS  286 (290)
Q Consensus       266 ~~~g~~~iv~~Ll~~GAdin~  286 (290)
                      +..|+.+++++|+++||++++
T Consensus       134 ~~~~~~~i~~~Ll~~ga~~~~  154 (154)
T PHA02736        134 CERHDAKMMNILRAKGAQCKV  154 (154)
T ss_pred             HHcCCHHHHHHHHHcCCCCCC
Confidence            999999999999999999864

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.78  E-value=5.6e-19  Score=138.13  Aligned_cols=94  Identities=29%  Similarity=0.322  Sum_probs=84.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCC-CcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHH
Q 022927          195 GLRDAIKNGDAAAVKKLLSEGVD-ANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKM  273 (290)
Q Consensus       195 ~Lh~A~~~g~~~~v~~Ll~~g~~-vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~i  273 (290)
                      -+.||+..+.+..|+.||+..++ +|.+|.+|.||||-|+++|+.+|++.|+.+||+++.+...||||||-|+..++.++
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~v  145 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEV  145 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhH
Confidence            47889999999999988887766 89999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCCC
Q 022927          274 RQKMEEDKNNVGSTT  288 (290)
Q Consensus       274 v~~Ll~~GAdin~~~  288 (290)
                      +.+||++|||||+..
T Consensus       146 a~~LLqhgaDVnA~t  160 (228)
T KOG0512|consen  146 AGRLLQHGADVNAQT  160 (228)
T ss_pred             HHHHHhccCcccccc
Confidence            999999999999864

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.78  E-value=1.5e-18  Score=152.04  Aligned_cols=117  Identities=16%  Similarity=0.146  Sum_probs=78.1

Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccc-cCCCcHHHHHHHcCCH
Q 022927          160 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCD-KQGMSLLHLAALFNRT  238 (290)
Q Consensus       160 ~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d-~~g~TpLh~A~~~g~~  238 (290)
                      ...+..+.+++|++.|++++..+..   ....|.||||+|+..++.+++++|+++|+++|..+ ..|.||||+|+..++.
T Consensus        41 ~~~~~~eivk~LL~~GAdiN~~~~~---sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~  117 (300)
T PHA02884         41 IKFHYTDIIDAILKLGADPEAPFPL---SENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCL  117 (300)
T ss_pred             HHcCCHHHHHHHHHCCCCccccCcc---cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCH
Confidence            3445566677777777777665320   01123457777777777777777777777777653 4677777777777777


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHh
Q 022927          239 DIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEE  279 (290)
Q Consensus       239 ~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~  279 (290)
                      +++++|+++|++++.+|..|+||||+|+..++.+++.++..
T Consensus       118 eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~  158 (300)
T PHA02884        118 KCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICD  158 (300)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcC
Confidence            77777777777777777777777777777666666655543

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.78  E-value=4.8e-19  Score=171.30  Aligned_cols=120  Identities=17%  Similarity=0.227  Sum_probs=106.4

Q ss_pred             CCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCC--HHHHHHHHHCCCCCcccccCCCcHHHHH--------
Q 022927          163 TSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGD--AAAVKKLLSEGVDANFCDKQGMSLLHLA--------  232 (290)
Q Consensus       163 ~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~--~~~v~~Ll~~g~~vn~~d~~g~TpLh~A--------  232 (290)
                      +..+++++|++.|++++..+..+.+       |||+|+..|+  .++|++||++|+++|.+|..|+||||+|        
T Consensus       190 ~~~eIVklLLe~GADVN~kD~~G~T-------PLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~  262 (764)
T PHA02716        190 VDIDILEWLCNNGVNVNLQNNHLIT-------PLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNIN  262 (764)
T ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCC-------HHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccC
Confidence            3457889999999999988876665       9999999995  4899999999999999999999999975        


Q ss_pred             -----------------------------HHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhc--cCCHHHHHHHHhCC
Q 022927          233 -----------------------------ALFNRTDIAFILMESGANMDCKNAQGESPLDCAPV--TLQYKMRQKMEEDK  281 (290)
Q Consensus       233 -----------------------------~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~--~g~~~iv~~Ll~~G  281 (290)
                                                   +..|+.+++++|+++|++++.+|..|+||||+|+.  .++.+++++|+++|
T Consensus       263 ~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~G  342 (764)
T PHA02716        263 PEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYG  342 (764)
T ss_pred             HHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcC
Confidence                                         34578899999999999999999999999998764  46899999999999


Q ss_pred             CCCCCCCC
Q 022927          282 NNVGSTTS  289 (290)
Q Consensus       282 Adin~~~~  289 (290)
                      |++|++|.
T Consensus       343 ADIN~kD~  350 (764)
T PHA02716        343 NDLNEPDN  350 (764)
T ss_pred             CCCccCCC
Confidence            99998874

>PHA02741 hypothetical protein; Provisional

Probab=99.78  E-value=1.2e-18  Score=141.63  Aligned_cols=89  Identities=27%  Similarity=0.274  Sum_probs=54.0

Q ss_pred             hHHHHHHHcCC----HHHHHHHHHCCCCCccccc-CCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCChhhhhhc
Q 022927          194 EGLRDAIKNGD----AAAVKKLLSEGVDANFCDK-QGMSLLHLAALFNRTDIAFILME-SGANMDCKNAQGESPLDCAPV  267 (290)
Q Consensus       194 t~Lh~A~~~g~----~~~v~~Ll~~g~~vn~~d~-~g~TpLh~A~~~g~~~iv~~Ll~-~Ga~in~~d~~G~TpL~~A~~  267 (290)
                      ||||+|+..|+    .+++++|++.|+++|.++. .|+||||+|+..++.+++++|+. .|++++.+|.+|+||||+|+.
T Consensus        62 T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~  141 (169)
T PHA02741         62 MCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAID  141 (169)
T ss_pred             cHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHH
Confidence            36666666665    3555666666666666553 56666666666666666666665 366666666666666666666


Q ss_pred             cCCHHHHHHHHhCCC
Q 022927          268 TLQYKMRQKMEEDKN  282 (290)
Q Consensus       268 ~g~~~iv~~Ll~~GA  282 (290)
                      .++.+++++|++.++
T Consensus       142 ~~~~~iv~~L~~~~~  156 (169)
T PHA02741        142 NEDVAMMQILREIVA  156 (169)
T ss_pred             CCCHHHHHHHHHHHH
Confidence            666666666665544

>PHA02795 ankyrin-like protein; Provisional

Probab=99.78  E-value=5.1e-19  Score=161.09  Aligned_cols=131  Identities=18%  Similarity=0.069  Sum_probs=108.4

Q ss_pred             ccCCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcC
Q 022927          157 ARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFN  236 (290)
Q Consensus       157 ~~~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g  236 (290)
                      ...+..+..+++++|++.|+......... .....+.+++|.|...++.+++++|+++|+++|.+|..|.||||+|+..|
T Consensus       154 h~A~~~~~~eIVk~Lls~Ga~~~n~~~~~-l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g  232 (437)
T PHA02795        154 FRGICKKESSVVEFILNCGIPDENDVKLD-LYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAG  232 (437)
T ss_pred             HHHHHcCcHHHHHHHHhcCCcccccccch-hhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcC
Confidence            33445567788888888887432211100 00113446899999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCChhhhhhccC--------CHHHHHHHHhCCCCCCCCC
Q 022927          237 RTDIAFILMESGANMDCKNAQGESPLDCAPVTL--------QYKMRQKMEEDKNNVGSTT  288 (290)
Q Consensus       237 ~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g--------~~~iv~~Ll~~GAdin~~~  288 (290)
                      +.+++++|+++|++++.+|..|+||||+|+..|        +.+++++|+++|++++...
T Consensus       233 ~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~~  292 (437)
T PHA02795        233 YIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCIK  292 (437)
T ss_pred             CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCchh
Confidence            999999999999999999999999999999988        4699999999999998653

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.78  E-value=1.3e-18  Score=162.00  Aligned_cols=129  Identities=21%  Similarity=0.209  Sum_probs=114.4

Q ss_pred             cccccCCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCC-----------------
Q 022927          154 ENTARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGV-----------------  216 (290)
Q Consensus       154 ~~~~~~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~-----------------  216 (290)
                      .........+..+++++|++.|++++..+..+.+       |||+|+..|+.+++++|+++|+                 
T Consensus        37 tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t-------~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~  109 (434)
T PHA02874         37 TPLIDAIRSGDAKIVELFIKHGADINHINTKIPH-------PLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKT  109 (434)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCC-------HHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHH
Confidence            3344456778889999999999999877766554       9999999999999999987764                 


Q ss_pred             ------CCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          217 ------DANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       217 ------~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                            +++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..|.
T Consensus       110 ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~  188 (434)
T PHA02874        110 ILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDN  188 (434)
T ss_pred             HHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCC
Confidence                  5677888999999999999999999999999999999999999999999999999999999999999988763

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.78  E-value=8.5e-19  Score=165.11  Aligned_cols=118  Identities=21%  Similarity=0.257  Sum_probs=77.2

Q ss_pred             CCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCC------CcHHHHHHHcCC
Q 022927          164 SNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQG------MSLLHLAALFNR  237 (290)
Q Consensus       164 ~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g------~TpLh~A~~~g~  237 (290)
                      ..+++++|++.|++++..+..+.+       |||+|+..|+.+++++|+++|++++..+..|      .||||+|+..++
T Consensus       155 ~~~iv~~Ll~~g~din~~d~~g~t-------pL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~  227 (480)
T PHA03100        155 DLKILKLLIDKGVDINAKNRYGYT-------PLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNE  227 (480)
T ss_pred             hHHHHHHHHHCCCCcccccCCCCC-------HHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCc
Confidence            566777777777777666554433       6666666666666666666666666666555      566666666666


Q ss_pred             --HHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCC
Q 022927          238 --TDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT  288 (290)
Q Consensus       238 --~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~  288 (290)
                        .+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|||+|..|
T Consensus       228 ~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d  280 (480)
T PHA03100        228 ITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVN  280 (480)
T ss_pred             CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccC
Confidence              666666666666666666666666666666666666666666666666554

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.77  E-value=9.5e-19  Score=164.80  Aligned_cols=123  Identities=21%  Similarity=0.270  Sum_probs=111.7

Q ss_pred             CCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHH--HcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcC
Q 022927          159 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAI--KNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFN  236 (290)
Q Consensus       159 ~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~--~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g  236 (290)
                      ....+..+++++|++.|++++..+..+.+       |||+|+  ..|+.+++++|+++|++++..|..|.||||+|+..+
T Consensus        80 a~~~~~~~iv~~Ll~~ga~i~~~d~~g~t-------pL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  152 (480)
T PHA03100         80 YNLTDVKEIVKLLLEYGANVNAPDNNGIT-------PLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESN  152 (480)
T ss_pred             HHhhchHHHHHHHHHCCCCCCCCCCCCCc-------hhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcC
Confidence            34556678889999999998777665555       899999  999999999999999999999999999999999999


Q ss_pred             --CHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCC
Q 022927          237 --RTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT  288 (290)
Q Consensus       237 --~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~  288 (290)
                        +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..+
T Consensus       153 ~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~  206 (480)
T PHA03100        153 KIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGD  206 (480)
T ss_pred             CChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCC
Confidence              9999999999999999999999999999999999999999999999998765

>PHA02741 hypothetical protein; Provisional

Probab=99.76  E-value=1.7e-18  Score=140.77  Aligned_cols=103  Identities=16%  Similarity=0.206  Sum_probs=93.0

Q ss_pred             CCCCCCCccccccchHHHHHHHcCCHHHHHHH---H---HCCCCCcccccCCCcHHHHHHHcCC----HHHHHHHHHCCC
Q 022927          180 GATDKPRMEYEVNGEGLRDAIKNGDAAAVKKL---L---SEGVDANFCDKQGMSLLHLAALFNR----TDIAFILMESGA  249 (290)
Q Consensus       180 ~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~L---l---~~g~~vn~~d~~g~TpLh~A~~~g~----~~iv~~Ll~~Ga  249 (290)
                      ..+..+.+       +||+|+..|+.+++++|   +   ..|++++.+|..|+||||+|+..|+    .+++++|+++|+
T Consensus        16 ~~~~~g~t-------~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~ga   88 (169)
T PHA02741         16 EKNSEGEN-------FFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGA   88 (169)
T ss_pred             ccccCCCC-------HHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence            34556666       89999999999999986   6   6789999999999999999999999    589999999999


Q ss_pred             CCCCCCC-CCCChhhhhhccCCHHHHHHHHh-CCCCCCCCCC
Q 022927          250 NMDCKNA-QGESPLDCAPVTLQYKMRQKMEE-DKNNVGSTTS  289 (290)
Q Consensus       250 ~in~~d~-~G~TpL~~A~~~g~~~iv~~Ll~-~GAdin~~~~  289 (290)
                      ++|.++. .|+||||+|+..++.+++++|++ .|++++..|.
T Consensus        89 din~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~  130 (169)
T PHA02741         89 DINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNA  130 (169)
T ss_pred             CCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCC
Confidence            9999985 99999999999999999999997 5999998764

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.76  E-value=2e-18  Score=167.08  Aligned_cols=121  Identities=16%  Similarity=0.143  Sum_probs=106.1

Q ss_pred             CCCCcccccccCCC-CCCCCC-CCCCCccccccchHHHHHHH--cCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCC
Q 022927          162 STSNSNFSSIFNPG-QVTNGA-TDKPRMEYEVNGEGLRDAIK--NGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR  237 (290)
Q Consensus       162 s~~~~~~~~Ll~~g-~~~~~~-~~~~~~~~~~~~t~Lh~A~~--~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~  237 (290)
                      ....+++++|++.| ++++.. +..+.+       |||+|+.  .++.+++++|+++|+++|.+|..|+||||+|+..|+
T Consensus       152 ~v~leiVk~LLe~G~ADIN~~~d~~G~T-------pLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~  224 (764)
T PHA02716        152 GIDLDLIKYMVDVGIVNLNYVCKKTGYG-------ILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGN  224 (764)
T ss_pred             CCCHHHHHHHHHCCCCCcccccCCCCCc-------HHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence            45668889999999 999887 555554       9999865  467899999999999999999999999999999995


Q ss_pred             --HHHHHHHHHCCCCCCCCCCCCCChhhhh-------------------------------------hccCCHHHHHHHH
Q 022927          238 --TDIAFILMESGANMDCKNAQGESPLDCA-------------------------------------PVTLQYKMRQKME  278 (290)
Q Consensus       238 --~~iv~~Ll~~Ga~in~~d~~G~TpL~~A-------------------------------------~~~g~~~iv~~Ll  278 (290)
                        .+++++|+++||++|.+|..|+||||+|                                     +..|+.+++++|+
T Consensus       225 ~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLL  304 (764)
T PHA02716        225 VCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFL  304 (764)
T ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHH
Confidence              4899999999999999999999999975                                     3457889999999


Q ss_pred             hCCCCCCCCCC
Q 022927          279 EDKNNVGSTTS  289 (290)
Q Consensus       279 ~~GAdin~~~~  289 (290)
                      ++||++|.+|.
T Consensus       305 e~GAdIN~kD~  315 (764)
T PHA02716        305 QPGVKLHYKDS  315 (764)
T ss_pred             hCCCceeccCC
Confidence            99999998764

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.76  E-value=3.2e-18  Score=138.79  Aligned_cols=96  Identities=18%  Similarity=0.311  Sum_probs=87.1

Q ss_pred             hHHHHHHHcCCH----HHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHH---HHHHHHCCCCCCCCC-CCCCChhhhh
Q 022927          194 EGLRDAIKNGDA----AAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDI---AFILMESGANMDCKN-AQGESPLDCA  265 (290)
Q Consensus       194 t~Lh~A~~~g~~----~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~i---v~~Ll~~Ga~in~~d-~~G~TpL~~A  265 (290)
                      ++||+|+..|+.    +++++|++.|++++..|..|+||||+|+..|+.++   +++|+++|+++|.++ ..|+||||+|
T Consensus        22 ~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A  101 (166)
T PHA02743         22 NTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIA  101 (166)
T ss_pred             cHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHH
Confidence            389999999998    56667888999999999999999999999988654   899999999999998 5899999999


Q ss_pred             hccCCHHHHHHHHh-CCCCCCCCCC
Q 022927          266 PVTLQYKMRQKMEE-DKNNVGSTTS  289 (290)
Q Consensus       266 ~~~g~~~iv~~Ll~-~GAdin~~~~  289 (290)
                      +..++.+++++|++ .|++++.+|.
T Consensus       102 ~~~g~~~iv~~Ll~~~gad~~~~d~  126 (166)
T PHA02743        102 ASTKNYELAEWLCRQLGVNLGAINY  126 (166)
T ss_pred             HHhCCHHHHHHHHhccCCCccCcCC
Confidence            99999999999995 8999998764

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.75  E-value=3.9e-18  Score=149.43  Aligned_cols=95  Identities=18%  Similarity=0.115  Sum_probs=89.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCcccc----cCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCChhhhhhccC
Q 022927          195 GLRDAIKNGDAAAVKKLLSEGVDANFCD----KQGMSLLHLAALFNRTDIAFILMESGANMDCK-NAQGESPLDCAPVTL  269 (290)
Q Consensus       195 ~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d----~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~-d~~G~TpL~~A~~~g  269 (290)
                      +||+|+..|+.+++++|+++|+++|.++    ..|.||||+|+..++.+++++|+++||++|.+ +..|.||||+|+..+
T Consensus        36 lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~  115 (300)
T PHA02884         36 ILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHG  115 (300)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcC
Confidence            7999999999999999999999999974    58999999999999999999999999999986 468999999999999


Q ss_pred             CHHHHHHHHhCCCCCCCCCC
Q 022927          270 QYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       270 ~~~iv~~Ll~~GAdin~~~~  289 (290)
                      +.+++++|+++||+++.+|.
T Consensus       116 ~~eivklLL~~GAdin~kd~  135 (300)
T PHA02884        116 CLKCLEILLSYGADINIQTN  135 (300)
T ss_pred             CHHHHHHHHHCCCCCCCCCC
Confidence            99999999999999998864

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.75  E-value=2.4e-18  Score=144.65  Aligned_cols=99  Identities=26%  Similarity=0.249  Sum_probs=94.6

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCC
Q 022927          191 VNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQ  270 (290)
Q Consensus       191 ~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~  270 (290)
                      .|.+|||||++.|+..+++.||..|+.+|..+....||||+|+..|+.++++.||.+.+|+|+.|..|.||||+|+..|+
T Consensus        33 hgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplhyacfwgy  112 (448)
T KOG0195|consen   33 HGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWGY  112 (448)
T ss_pred             cCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhhhhcH
Confidence            34459999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCC
Q 022927          271 YKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       271 ~~iv~~Ll~~GAdin~~~~  289 (290)
                      ..|.+-|+..||.+++.|+
T Consensus       113 dqiaedli~~ga~v~icnk  131 (448)
T KOG0195|consen  113 DQIAEDLISCGAAVNICNK  131 (448)
T ss_pred             HHHHHHHHhccceeeeccc
Confidence            9999999999999998875

>PHA02795 ankyrin-like protein; Provisional

Probab=99.75  E-value=3.6e-18  Score=155.53  Aligned_cols=119  Identities=13%  Similarity=0.023  Sum_probs=106.2

Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCc-cc-----ccCCCcHHHHHHHc
Q 022927          162 STSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDAN-FC-----DKQGMSLLHLAALF  235 (290)
Q Consensus       162 s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn-~~-----d~~g~TpLh~A~~~  235 (290)
                      .+..+++++|+++|++++..+.         .||||+|+..++.+++++|+.+|++.+ ..     +..+.|++|.|+..
T Consensus       128 ~n~~eiV~~LI~~GADIn~~~~---------~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~  198 (437)
T PHA02795        128 YVEIDIVDFMVDHGAVIYKIEC---------LNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEP  198 (437)
T ss_pred             CCCHHHHHHHHHCCCCCCCCCC---------CCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhc
Confidence            5778899999999999987432         359999999999999999999998543 22     13478999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          236 NRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       236 g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      ++.+++++|+++||++|.+|..|.||||+|+..|+.+++++|+++||++|++|.
T Consensus       199 ~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~  252 (437)
T PHA02795        199 TVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMS  252 (437)
T ss_pred             CHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence            999999999999999999999999999999999999999999999999999874

>PHA03095 ankyrin-like protein; Provisional

Probab=99.75  E-value=3e-18  Score=160.98  Aligned_cols=116  Identities=17%  Similarity=0.217  Sum_probs=97.0

Q ss_pred             CCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCH--HHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHH
Q 022927          163 TSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDA--AAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDI  240 (290)
Q Consensus       163 ~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~--~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~i  240 (290)
                      ....+++.|++.|++++..+..+.+       |||+|+..|+.  .+++.|++.|+++|.+|..|+||||+|+..|+.++
T Consensus       200 ~~~~i~~~Ll~~g~~~~~~d~~g~t-------pLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~  272 (471)
T PHA03095        200 PRARIVRELIRAGCDPAATDMLGNT-------PLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRA  272 (471)
T ss_pred             CcHHHHHHHHHcCCCCcccCCCCCC-------HHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHH
Confidence            4456677788888888777665554       89998888865  57788888899999888889999999999899999


Q ss_pred             HHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCC
Q 022927          241 AFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVG  285 (290)
Q Consensus       241 v~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin  285 (290)
                      +++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++
T Consensus       273 v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~~  317 (471)
T PHA03095        273 CRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSAE  317 (471)
T ss_pred             HHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCHH
Confidence            999999999999888899999999999999999999998888875

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.74  E-value=3.4e-18  Score=152.11  Aligned_cols=133  Identities=18%  Similarity=0.132  Sum_probs=112.7

Q ss_pred             cccCCCCCCCcccccccC-CCCCCCCCCCCC-CccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHH
Q 022927          156 TARSRGSTSNSNFSSIFN-PGQVTNGATDKP-RMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAA  233 (290)
Q Consensus       156 ~~~~~~s~~~~~~~~Ll~-~g~~~~~~~~~~-~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~  233 (290)
                      ..-.+..+-.+++++|++ .++++....... ....-.|.+||..|+..|++++|+.|+++|+++|.......|||-.|+
T Consensus        46 L~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraAC  125 (615)
T KOG0508|consen   46 LLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAAC  125 (615)
T ss_pred             eeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHH
Confidence            334457788889999987 455554322111 011224566899999999999999999999999998888899999999


Q ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCC
Q 022927          234 LFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT  288 (290)
Q Consensus       234 ~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~  288 (290)
                      .-|+.+++++|+++|+|+++.|..|.|.||+|+..|+.+|+++|++.|||+|+++
T Consensus       126 fDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks  180 (615)
T KOG0508|consen  126 FDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKS  180 (615)
T ss_pred             hcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhc
Confidence            9999999999999999999999999999999999999999999999999999875

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.74  E-value=7.7e-18  Score=159.25  Aligned_cols=118  Identities=19%  Similarity=0.213  Sum_probs=104.4

Q ss_pred             CCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHc---CCHHHHHHHHHCCCCC-cccccCCCcHHHHHHHc--CC
Q 022927          164 SNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKN---GDAAAVKKLLSEGVDA-NFCDKQGMSLLHLAALF--NR  237 (290)
Q Consensus       164 ~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~---g~~~~v~~Ll~~g~~v-n~~d~~g~TpLh~A~~~--g~  237 (290)
                      ..+++++|++.|++++..+..+.+       |||.|+..   ++.+++++|+++|+|+ +.+|..|+||||+|+..  ++
T Consensus        87 ~~~iv~~Ll~~Gadin~~d~~g~t-------pL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~  159 (494)
T PHA02989         87 IKKIVKLLLKFGADINLKTFNGVS-------PIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVK  159 (494)
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCc-------HHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCC
Confidence            346789999999999988876655       99988765   6789999999999999 88999999999998764  68


Q ss_pred             HHHHHHHHHCCCCCCC-CCCCCCChhhhhhcc----CCHHHHHHHHhCCCCCCCCC
Q 022927          238 TDIAFILMESGANMDC-KNAQGESPLDCAPVT----LQYKMRQKMEEDKNNVGSTT  288 (290)
Q Consensus       238 ~~iv~~Ll~~Ga~in~-~d~~G~TpL~~A~~~----g~~~iv~~Ll~~GAdin~~~  288 (290)
                      .+++++|+++|++++. .+..|.||||+|+..    ++.+++++|+++||++|..|
T Consensus       160 ~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~  215 (494)
T PHA02989        160 KDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNN  215 (494)
T ss_pred             HHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccC
Confidence            9999999999999998 688999999998765    48999999999999999876

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.74  E-value=7.5e-18  Score=159.36  Aligned_cols=120  Identities=14%  Similarity=0.160  Sum_probs=97.6

Q ss_pred             CCCcccccccCCCCCC-CCCCCCCCccccccchHHHHHHHc--CCHHHHHHHHHCCCCCcc-cccCCCcHHHHHHHcC--
Q 022927          163 TSNSNFSSIFNPGQVT-NGATDKPRMEYEVNGEGLRDAIKN--GDAAAVKKLLSEGVDANF-CDKQGMSLLHLAALFN--  236 (290)
Q Consensus       163 ~~~~~~~~Ll~~g~~~-~~~~~~~~~~~~~~~t~Lh~A~~~--g~~~~v~~Ll~~g~~vn~-~d~~g~TpLh~A~~~g--  236 (290)
                      +..+++++|++.|+++ +..+..+.+       |||+|+..  ++.+++++|+++|++++. .+..|.||||+|+..+  
T Consensus       122 ~~~eiv~~Ll~~Gadin~~~d~~g~t-------pLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~  194 (494)
T PHA02989        122 NNCDMLRFLLSKGINVNDVKNSRGYN-------LLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDID  194 (494)
T ss_pred             CcHHHHHHHHHCCCCcccccCCCCCC-------HHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccc
Confidence            4567889999999998 666655554       89988764  578899999999999888 5778999999887654  


Q ss_pred             --CHHHHHHHHHCCCCCCC--------------------------------------CCCCCCChhhhhhccCCHHHHHH
Q 022927          237 --RTDIAFILMESGANMDC--------------------------------------KNAQGESPLDCAPVTLQYKMRQK  276 (290)
Q Consensus       237 --~~~iv~~Ll~~Ga~in~--------------------------------------~d~~G~TpL~~A~~~g~~~iv~~  276 (290)
                        +.+++++|+++|++++.                                      +|..|+||||+|+..|+.+++++
T Consensus       195 ~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~  274 (494)
T PHA02989        195 VISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNY  274 (494)
T ss_pred             cccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHH
Confidence              78888888888877654                                      44568999999999999999999


Q ss_pred             HHhCCCCCCCCCC
Q 022927          277 MEEDKNNVGSTTS  289 (290)
Q Consensus       277 Ll~~GAdin~~~~  289 (290)
                      |+++|||+|++|.
T Consensus       275 LL~~Gadin~~d~  287 (494)
T PHA02989        275 LLKLGDDIYNVSK  287 (494)
T ss_pred             HHHcCCCccccCC
Confidence            9999999988764

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.74  E-value=8.3e-18  Score=164.96  Aligned_cols=119  Identities=17%  Similarity=0.184  Sum_probs=104.0

Q ss_pred             CCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCC-HHHHH
Q 022927          164 SNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR-TDIAF  242 (290)
Q Consensus       164 ~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~-~~iv~  242 (290)
                      ...++++|++.|++++..+..+.       ||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++ ..+++
T Consensus       354 ~~~iv~lLl~~gadin~~d~~G~-------TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk  426 (682)
T PHA02876        354 NKDIVITLLELGANVNARDYCDK-------TPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVK  426 (682)
T ss_pred             cHHHHHHHHHcCCCCccCCCCCC-------CHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHH
Confidence            44556777788888877766555       49999999999999999999999999999999999999987766 56789


Q ss_pred             HHHHCCCCCCCCCCCCCChhhhhhccC-CHHHHHHHHhCCCCCCCCCC
Q 022927          243 ILMESGANMDCKNAQGESPLDCAPVTL-QYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       243 ~Ll~~Ga~in~~d~~G~TpL~~A~~~g-~~~iv~~Ll~~GAdin~~~~  289 (290)
                      +|+++|+++|.+|..|+||||+|+..| +.+++++|+++|||+|..|.
T Consensus       427 ~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~  474 (682)
T PHA02876        427 TLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINI  474 (682)
T ss_pred             HHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCC
Confidence            999999999999999999999999876 68999999999999998874

>PHA02730 ankyrin-like protein; Provisional

Probab=99.74  E-value=6.5e-18  Score=160.83  Aligned_cols=119  Identities=16%  Similarity=0.167  Sum_probs=102.8

Q ss_pred             CCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCC----HHHHHHHHHCCC--CCcccccCCCcHHHH---HH
Q 022927          163 TSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGD----AAAVKKLLSEGV--DANFCDKQGMSLLHL---AA  233 (290)
Q Consensus       163 ~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~----~~~v~~Ll~~g~--~vn~~d~~g~TpLh~---A~  233 (290)
                      ...+++++|+++|++++.. ..       |.||||+|+..++    .+++++||++|+  ++|.+|..|.||||.   |.
T Consensus       357 v~ieIvelLIs~GAdIN~k-~~-------G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~  428 (672)
T PHA02730        357 VSIPILRCMLDNGATMDKT-TD-------NNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSR  428 (672)
T ss_pred             CcHHHHHHHHHCCCCCCcC-CC-------CCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHH
Confidence            4578889999999999963 33       4569999998875    899999999997  699999999999984   33


Q ss_pred             HcC---------CHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          234 LFN---------RTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       234 ~~g---------~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      ..+         ..+++++|+.+||++|.+|..|+||||+|+..++.+++++|+++||++|+.|.
T Consensus       429 ~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~  493 (672)
T PHA02730        429 FNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSR  493 (672)
T ss_pred             hccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCC
Confidence            232         23579999999999999999999999999999999999999999999999873

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.73  E-value=8e-18  Score=166.30  Aligned_cols=109  Identities=27%  Similarity=0.304  Sum_probs=64.9

Q ss_pred             ccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCC
Q 022927          169 SSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESG  248 (290)
Q Consensus       169 ~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~G  248 (290)
                      +.+++.|+.++.++..+.+       |||.|+.+|++.+|++||++|+|++.+|+.|+||||.|+..|+.+|+++|+++|
T Consensus       524 ~~l~~~ga~v~~~~~r~~T-------pLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~G  596 (1143)
T KOG4177|consen  524 KILLEHGANVDLRTGRGYT-------PLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHG  596 (1143)
T ss_pred             HHHhhcCCceehhcccccc-------hHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcC
Confidence            4444444444444444333       566666666666666666666666666666666666666666666666666666


Q ss_pred             CCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCC
Q 022927          249 ANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNV  284 (290)
Q Consensus       249 a~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdi  284 (290)
                      |++|..|.+|.|||++|++.|+++++++|+..|++.
T Consensus       597 A~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~  632 (1143)
T KOG4177|consen  597 ASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTATP  632 (1143)
T ss_pred             CCCCcccccCcchhHHHHHhcccchhhHHHhccCcc
Confidence            666666666666666666666666666666666553

>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.73  E-value=5.1e-19  Score=121.94  Aligned_cols=59  Identities=31%  Similarity=0.597  Sum_probs=43.2

Q ss_pred             ccccccccCCCCCccccccccccccceecCCCCCCccccc--CCCCCCcccccccchhhhc
Q 022927            4 HDLQNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLP--QFGIHTNVRVCADCFNSSS   62 (290)
Q Consensus         4 ~~~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~--~~~~~~~~rvC~~C~~~~~   62 (290)
                      ....|+.|+++|++++||||||.||.|||..|+.++..++  ..+...++|||+.||..++
T Consensus         8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~   68 (69)
T PF01363_consen    8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRIPLPTPSSGSGEPVRVCDSCYSKLQ   68 (69)
T ss_dssp             G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEEEET--GGTESEEEEE-HHHHHHHH
T ss_pred             CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEEcccccccCCCCcCEECHHHHHHhc
Confidence            4568999999999999999999999999999999999887  5566799999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....

>PHA02798 ankyrin-like protein; Provisional

Probab=99.72  E-value=2.2e-17  Score=156.00  Aligned_cols=117  Identities=16%  Similarity=0.271  Sum_probs=106.3

Q ss_pred             CcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcC---CHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCC---H
Q 022927          165 NSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNG---DAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR---T  238 (290)
Q Consensus       165 ~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g---~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~---~  238 (290)
                      .+++++|++.|++++..+..+.+       |||+|+..+   +.+++++|+++|++++..|..|.||||+|+..++   .
T Consensus        89 ~~iv~~Ll~~GadiN~~d~~G~T-------pLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~  161 (489)
T PHA02798         89 LDIVKILIENGADINKKNSDGET-------PLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDI  161 (489)
T ss_pred             HHHHHHHHHCCCCCCCCCCCcCc-------HHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchH
Confidence            57889999999999998877665       999999986   7899999999999999999999999999999988   9


Q ss_pred             HHHHHHHHCCCCCCCCC-CCCCChhhhhhc----cCCHHHHHHHHhCCCCCCCCC
Q 022927          239 DIAFILMESGANMDCKN-AQGESPLDCAPV----TLQYKMRQKMEEDKNNVGSTT  288 (290)
Q Consensus       239 ~iv~~Ll~~Ga~in~~d-~~G~TpL~~A~~----~g~~~iv~~Ll~~GAdin~~~  288 (290)
                      +++++|+++|++++.++ ..|.||||.++.    .++.+++++|+++|++++..+
T Consensus       162 ~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~  216 (489)
T PHA02798        162 EIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKEN  216 (489)
T ss_pred             HHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCC
Confidence            99999999999999885 579999998865    458999999999999998765

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.72  E-value=2.1e-17  Score=116.12  Aligned_cols=92  Identities=25%  Similarity=0.281  Sum_probs=85.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHH
Q 022927          195 GLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMR  274 (290)
Q Consensus       195 ~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv  274 (290)
                      -+.|++++|.++-|+..+..|.++|..- .|++|||||+-+|+.+++++|+..||+|+.+|++|-|||.-|+..||.++|
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cV   83 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCV   83 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHH
Confidence            5899999999999999999998888654 899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCC
Q 022927          275 QKMEEDKNNVGST  287 (290)
Q Consensus       275 ~~Ll~~GAdin~~  287 (290)
                      ++||+.|||.-..
T Consensus        84 klLL~~GAdrt~~   96 (117)
T KOG4214|consen   84 KLLLQNGADRTIH   96 (117)
T ss_pred             HHHHHcCccccee
Confidence            9999999986543

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.71  E-value=1.1e-17  Score=165.23  Aligned_cols=131  Identities=18%  Similarity=0.239  Sum_probs=119.0

Q ss_pred             CccccccCCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHH
Q 022927          152 KTENTARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHL  231 (290)
Q Consensus       152 ~~~~~~~~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~  231 (290)
                      ......-.+..+..+.++.|++.++..+...+.+.+       +||.|...+...+++.++++|++++.++.+|.||||.
T Consensus       474 G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~-------~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~  546 (1143)
T KOG4177|consen  474 GFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLT-------PLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHV  546 (1143)
T ss_pred             cCcchhhhhccCCchHHHHhhhcCCccCccchhccc-------hhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHH
Confidence            344455567888889999999998777666655554       8999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          232 AALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       232 A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      |+.+|+.++|++||++|||++.++..|+||||.|+..|+.+|+++|+++||++|+.|.
T Consensus       547 A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~  604 (1143)
T KOG4177|consen  547 AVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADL  604 (1143)
T ss_pred             HHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccc
Confidence            9999999999999999999999999999999999999999999999999999999874

>PHA02917 ankyrin-like protein; Provisional

Probab=99.71  E-value=3.3e-17  Score=158.67  Aligned_cols=115  Identities=14%  Similarity=0.121  Sum_probs=89.4

Q ss_pred             ccccccCCCCCCCCCCCCCCccccccchHHHHHHHc---CCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcC-------
Q 022927          167 NFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKN---GDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFN-------  236 (290)
Q Consensus       167 ~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~---g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g-------  236 (290)
                      .++.|+..|...+..+..+.+       |||+|+..   |+.++|++||+.|++++..|..|+||||+|+..|       
T Consensus        14 ~~~~l~~~~~~~~~~d~~g~t-------~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~   86 (661)
T PHA02917         14 ELKQMLRDRDPNDTRNQFKNN-------ALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKD   86 (661)
T ss_pred             HHHHHHhccCcccccCCCCCc-------HHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHH
Confidence            345566666666555555444       78876554   6688888888888888887888888888776533       


Q ss_pred             ----------------------------CHHHHHHHHHCCCCCCCCCCCCCChhhhh--hccCCHHHHHHHHhCCCCCCC
Q 022927          237 ----------------------------RTDIAFILMESGANMDCKNAQGESPLDCA--PVTLQYKMRQKMEEDKNNVGS  286 (290)
Q Consensus       237 ----------------------------~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A--~~~g~~~iv~~Ll~~GAdin~  286 (290)
                                                  +.+++++|+++|+|+|.+|..|+||||+|  +..|+.+++++|+++|||+|.
T Consensus        87 ~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~  166 (661)
T PHA02917         87 IAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLY  166 (661)
T ss_pred             HHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccc
Confidence                                        56788999999999999999999999954  457899999999999999986


Q ss_pred             CC
Q 022927          287 TT  288 (290)
Q Consensus       287 ~~  288 (290)
                      .|
T Consensus       167 ~d  168 (661)
T PHA02917        167 ED  168 (661)
T ss_pred             cc
Confidence            54

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.71  E-value=1.5e-17  Score=156.43  Aligned_cols=124  Identities=21%  Similarity=0.232  Sum_probs=112.7

Q ss_pred             CCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHH-CC-CCCcccccCCCcHHHHHHHcC
Q 022927          159 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLS-EG-VDANFCDKQGMSLLHLAALFN  236 (290)
Q Consensus       159 ~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~-~g-~~vn~~d~~g~TpLh~A~~~g  236 (290)
                      .+..|....+..|+..|++++.++.++.+       |||.|+.+|++..|+.||+ .| ..+|..|..|.||||+|+..|
T Consensus       280 a~r~G~~~svd~Ll~~Ga~I~~kn~d~~s-------pLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~g  352 (929)
T KOG0510|consen  280 AARQGGPESVDNLLGFGASINSKNKDEES-------PLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSG  352 (929)
T ss_pred             HHHcCChhHHHHHHHcCCcccccCCCCCC-------chHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcC
Confidence            36778888999999999999999877666       8999999999999999998 54 458889999999999999999


Q ss_pred             CHHHHHHHHHCCCCCC---CCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          237 RTDIAFILMESGANMD---CKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       237 ~~~iv~~Ll~~Ga~in---~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      +.+++++||+.||+..   ..|.+|.||||.|+..|+..+|++|+.+||++...|+
T Consensus       353 H~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~  408 (929)
T KOG0510|consen  353 HDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGVKNK  408 (929)
T ss_pred             HHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCceeeccc
Confidence            9999999999999987   4599999999999999999999999999999977654

>PHA02946 ankyin-like protein; Provisional

Probab=99.70  E-value=3.4e-17  Score=152.56  Aligned_cols=94  Identities=18%  Similarity=0.243  Sum_probs=64.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCC--HHHHHHHHHCCCCCCCCCCCCCChhhhhhccC--
Q 022927          194 EGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR--TDIAFILMESGANMDCKNAQGESPLDCAPVTL--  269 (290)
Q Consensus       194 t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~--~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g--  269 (290)
                      |||| |+..|+.+++++|++.|++++.+|..|+||||+|+..++  .+++++|+++|++++.+|.+|+||||+|+..+  
T Consensus       143 tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~  221 (446)
T PHA02946        143 GPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVK  221 (446)
T ss_pred             cHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCC
Confidence            3554 444455666666666666666667777777777665443  56777777777777777777888888777764  


Q ss_pred             CHHHHHHHHhCCCCCCCCCC
Q 022927          270 QYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       270 ~~~iv~~Ll~~GAdin~~~~  289 (290)
                      +.+++++|++ |+++|.+|.
T Consensus       222 ~~~iv~lLl~-gadin~~d~  240 (446)
T PHA02946        222 NVDIINLLLP-STDVNKQNK  240 (446)
T ss_pred             cHHHHHHHHc-CCCCCCCCC
Confidence            6777777774 777777664

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.70  E-value=3.2e-17  Score=128.38  Aligned_cols=121  Identities=18%  Similarity=0.207  Sum_probs=99.7

Q ss_pred             CCCCCcccccccCCCCC-CCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHH
Q 022927          161 GSTSNSNFSSIFNPGQV-TNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD  239 (290)
Q Consensus       161 ~s~~~~~~~~Ll~~g~~-~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~  239 (290)
                      .......++.||+..++ +|.++..+.+       |||.|+++|+.++|+.|+..|++++.+...||||||-|+..++.+
T Consensus        72 e~nrl~eV~~lL~e~an~vNtrD~D~YT-------pLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   72 EKNRLTEVQRLLSEKANHVNTRDEDEYT-------PLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             hhccHHHHHHHHHhcccccccccccccc-------HHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchh
Confidence            34445566677765554 6666666555       999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCChhhhhhccCC-HHHHHHHHh-CCCCCCCCC
Q 022927          240 IAFILMESGANMDCKNAQGESPLDCAPVTLQ-YKMRQKMEE-DKNNVGSTT  288 (290)
Q Consensus       240 iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~-~~iv~~Ll~-~GAdin~~~  288 (290)
                      ++-+||++|+|||+.....+||||+|+...+ ...+++|+. .++++..++
T Consensus       145 va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~n  195 (228)
T KOG0512|consen  145 VAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKN  195 (228)
T ss_pred             HHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhc
Confidence            9999999999999999999999999997665 445666654 466655443

>PHA02917 ankyrin-like protein; Provisional

Probab=99.70  E-value=4.2e-17  Score=157.92  Aligned_cols=119  Identities=10%  Similarity=0.147  Sum_probs=102.3

Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHH--HcCCHHHHHHHHHCCCCCccccc---CC---------
Q 022927          160 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAI--KNGDAAAVKKLLSEGVDANFCDK---QG---------  225 (290)
Q Consensus       160 ~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~--~~g~~~~v~~Ll~~g~~vn~~d~---~g---------  225 (290)
                      +..+..+++++|++.|++++..+..+.+       |||+|+  ..|+.+++++||++|+++|..|.   .|         
T Consensus       111 ~~~~~~e~vk~Ll~~Gadin~~d~~g~T-------~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~  183 (661)
T PHA02917        111 SKNVDVDLIKVLVEHGFDLSVKCENHRS-------VIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPR  183 (661)
T ss_pred             hhcCCHHHHHHHHHcCCCCCccCCCCcc-------HHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccccccccc
Confidence            3445678899999999999998877766       899654  57899999999999999987653   34         


Q ss_pred             --CcHHHHHHH-----------cCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCH--HHHHHHHhCCCCCCC
Q 022927          226 --MSLLHLAAL-----------FNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQY--KMRQKMEEDKNNVGS  286 (290)
Q Consensus       226 --~TpLh~A~~-----------~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~--~iv~~Ll~~GAdin~  286 (290)
                        .||||+|+.           .++.+++++|+++|+++|.+|.+|+||||+|+..|+.  ++|++|++ |+++++
T Consensus       184 ~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~  258 (661)
T PHA02917        184 NCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTA  258 (661)
T ss_pred             ccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccc
Confidence              599999986           4689999999999999999999999999999999985  79999985 988764

>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1

Probab=99.69  E-value=7.6e-18  Score=115.74  Aligned_cols=59  Identities=36%  Similarity=0.712  Sum_probs=54.6

Q ss_pred             ccccccccCCCCCccccccccccccceecCCCCCCcccccCCCCCCcccccccchhhhc
Q 022927            4 HDLQNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSS   62 (290)
Q Consensus         4 ~~~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~   62 (290)
                      ..+.|+.|+++|++++||||||.||.|||..|+.++..++..+..+++|||+.||+.++
T Consensus         9 ~~~~C~~C~~~F~~~~rk~hCr~CG~i~C~~C~~~~~~~~~~~~~~p~rvC~~C~~~~~   67 (68)
T smart00064        9 EVSNCMGCGKEFNLTKRRHHCRNCGRIFCSKCSSKKAPLPKLGIERPVRVCDDCYENLS   67 (68)
T ss_pred             CCCcCcccCccccCcccccccccCCCCcChHHcCCeeecCccCCCCCcEECHHHHHHhc
Confidence            35689999999999999999999999999999999999998887789999999999874

The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.69  E-value=2.2e-17  Score=142.81  Aligned_cols=98  Identities=21%  Similarity=0.330  Sum_probs=83.1

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHHCC-CCCcccc--------------------------------------cCCCcHHHH
Q 022927          191 VNGEGLRDAIKNGDAAAVKKLLSEG-VDANFCD--------------------------------------KQGMSLLHL  231 (290)
Q Consensus       191 ~~~t~Lh~A~~~g~~~~v~~Ll~~g-~~vn~~d--------------------------------------~~g~TpLh~  231 (290)
                      .|.|+|||++..+++++|+.||+.| +++|.++                                      ..|+|+||+
T Consensus       267 NGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~gQTALML  346 (452)
T KOG0514|consen  267 NGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQHGQTALML  346 (452)
T ss_pred             CCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhhcchhhhh
Confidence            3445899999999999999999887 3444432                                      346778888


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhC-CCCCCCCC
Q 022927          232 AALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEED-KNNVGSTT  288 (290)
Q Consensus       232 A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~-GAdin~~~  288 (290)
                      |+.+|+.++++.||..|||||++|.+|.|+|+.|+++||.||+++||.. +.|+..+|
T Consensus       347 AVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD  404 (452)
T KOG0514|consen  347 AVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTD  404 (452)
T ss_pred             hhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeec
Confidence            8899999999999999999999999999999999999999999999975 77776655

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.68  E-value=1.7e-16  Score=155.78  Aligned_cols=116  Identities=22%  Similarity=0.330  Sum_probs=73.6

Q ss_pred             cccccccCCCCCCCCCCCCCCccccccchHHHHHHHcC-CHHHHHHHHHCCCCCcccccCCCcHHHHHHHc-CCHHHHHH
Q 022927          166 SNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNG-DAAAVKKLLSEGVDANFCDKQGMSLLHLAALF-NRTDIAFI  243 (290)
Q Consensus       166 ~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g-~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~-g~~~iv~~  243 (290)
                      .++++|++.|++++..+..+.+       |||+|+..| +.+++++|+..|++++..|..|+||||+|+.. ++.+++++
T Consensus       288 ~iv~lLl~~gadin~~d~~g~T-------pLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~l  360 (682)
T PHA02876        288 RLVPKLLERGADVNAKNIKGET-------PLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVIT  360 (682)
T ss_pred             HHHHHHHHCCCCCCCcCCCCCC-------HHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHH
Confidence            3567777778777766655444       666666666 45666666666666666666666666666553 34556666


Q ss_pred             HHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCC
Q 022927          244 LMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT  288 (290)
Q Consensus       244 Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~  288 (290)
                      |+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..+
T Consensus       361 Ll~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~  405 (682)
T PHA02876        361 LLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALS  405 (682)
T ss_pred             HHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccC
Confidence            666666666666666666666666666666666666666665543

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.66  E-value=1.4e-16  Score=137.86  Aligned_cols=117  Identities=19%  Similarity=0.230  Sum_probs=103.4

Q ss_pred             CCCcccccccCCCC-CCCCCCCCCCccc-------------------------------cccchHHHHHHHcCCHHHHHH
Q 022927          163 TSNSNFSSIFNPGQ-VTNGATDKPRMEY-------------------------------EVNGEGLRDAIKNGDAAAVKK  210 (290)
Q Consensus       163 ~~~~~~~~Ll~~g~-~~~~~~~~~~~~~-------------------------------~~~~t~Lh~A~~~g~~~~v~~  210 (290)
                      ++..+++.||+.|. +++..+..|.++.                               ..|+|+||+|+..|+.++|+.
T Consensus       279 aNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~gQTALMLAVSHGr~d~vk~  358 (452)
T KOG0514|consen  279 ANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQHGQTALMLAVSHGRVDMVKA  358 (452)
T ss_pred             cchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhhcchhhhhhhhcCcHHHHHH
Confidence            35677788888874 5777776655443                               247999999999999999999


Q ss_pred             HHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCChhhhhhccCCHHHHHHHHh
Q 022927          211 LLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMES-GANMDCKNAQGESPLDCAPVTLQYKMRQKMEE  279 (290)
Q Consensus       211 Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~-Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~  279 (290)
                      ||..|+|||++|.+|.|+||.|+++||.+|+++||.. ++|+...|.+|.|+|.+|...||.+|.-+|-.
T Consensus       359 LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa  428 (452)
T KOG0514|consen  359 LLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVMLYA  428 (452)
T ss_pred             HHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchHHHHHHHH
Confidence            9999999999999999999999999999999999987 89999999999999999999999999887754

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.65  E-value=1.5e-16  Score=127.26  Aligned_cols=97  Identities=22%  Similarity=0.263  Sum_probs=79.8

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHHCCC--C-----CcccccCCCcHHHHHHHcCCHH---HHHHHHHCCCCCCCCC-CCCC
Q 022927          191 VNGEGLRDAIKNGDAAAVKKLLSEGV--D-----ANFCDKQGMSLLHLAALFNRTD---IAFILMESGANMDCKN-AQGE  259 (290)
Q Consensus       191 ~~~t~Lh~A~~~g~~~~v~~Ll~~g~--~-----vn~~d~~g~TpLh~A~~~g~~~---iv~~Ll~~Ga~in~~d-~~G~  259 (290)
                      .|.||||+|+..|+..  .+++..+.  +     ++..|..|+||||+|+..|+.+   ++++|+++|++++.++ ..|+
T Consensus        16 ~g~tpLh~A~~~g~~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~   93 (154)
T PHA02736         16 EGENILHYLCRNGGVT--DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGN   93 (154)
T ss_pred             CCCCHHHHHHHhCCHH--HHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCC
Confidence            4566999999999843  33332222  2     3456889999999999999874   6889999999999998 4899


Q ss_pred             ChhhhhhccCCHHHHHHHHh-CCCCCCCCCC
Q 022927          260 SPLDCAPVTLQYKMRQKMEE-DKNNVGSTTS  289 (290)
Q Consensus       260 TpL~~A~~~g~~~iv~~Ll~-~GAdin~~~~  289 (290)
                      ||||+|+..|+.+++++|++ .|++++.+|.
T Consensus        94 T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~  124 (154)
T PHA02736         94 TPLHIAVYTQNYELATWLCNQPGVNMEILNY  124 (154)
T ss_pred             cHHHHHHHhCCHHHHHHHHhCCCCCCccccC
Confidence            99999999999999999998 5999998764

>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.65  E-value=2.7e-17  Score=152.95  Aligned_cols=62  Identities=35%  Similarity=0.712  Sum_probs=58.0

Q ss_pred             ccccccCCCCCccccccccccccceecCCCCCCcccccCCCCCCcccccccchhhhcccCCC
Q 022927            6 LQNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTGKD   67 (290)
Q Consensus         6 ~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~~~~   67 (290)
                      ..|++|..+|++|+|+||||+||+|||+.|+.+...+|.+|++++||||+.||..+......
T Consensus       166 ~~C~rCr~~F~~~~rkHHCr~CG~vFC~qcss~s~~lP~~Gi~~~VRVCd~C~E~l~~~s~~  227 (634)
T KOG1818|consen  166 EECLRCRVKFGLTNRKHHCRNCGQVFCGQCSSKSLTLPKLGIEKPVRVCDSCYELLTRASVG  227 (634)
T ss_pred             cccceeeeeeeeccccccccccchhhccCccccccCcccccccccceehhhhHHHhhhcccc
Confidence            57999999999999999999999999999999999999999999999999999988766544

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.65  E-value=3.5e-17  Score=132.75  Aligned_cols=121  Identities=21%  Similarity=0.141  Sum_probs=109.3

Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHH
Q 022927          160 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD  239 (290)
Q Consensus       160 ~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~  239 (290)
                      +.-+....+++||+.|++++.......+       +|..|+..|..++|++||+.+.|+|..|.+|-|||.||+..|+.+
T Consensus       168 aa~G~i~vV~fLL~~GAdp~~lgk~res-------ALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvk  240 (296)
T KOG0502|consen  168 AAKGHIPVVQFLLNSGADPDALGKYRES-------ALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVK  240 (296)
T ss_pred             HhcCchHHHHHHHHcCCChhhhhhhhhh-------hHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHH
Confidence            4556677889999999999887665554       899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCC
Q 022927          240 IAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT  288 (290)
Q Consensus       240 iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~  288 (290)
                      +++.||+.||+++..+..|++++.+|+..|+. +|+..++.-+..+.+|
T Consensus       241 cve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~lkl~Q~  288 (296)
T KOG0502|consen  241 CVESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHALKLCQD  288 (296)
T ss_pred             HHHHHHhcCCCcccccccCCcHHHHHHHhhhH-HHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999998 8888888777665554

>PHA02792 ankyrin-like protein; Provisional

Probab=99.65  E-value=5e-16  Score=146.65  Aligned_cols=118  Identities=12%  Similarity=0.061  Sum_probs=101.8

Q ss_pred             CCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCC--CcHHHHHHHcCCH--
Q 022927          163 TSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQG--MSLLHLAALFNRT--  238 (290)
Q Consensus       163 ~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g--~TpLh~A~~~g~~--  238 (290)
                      -..+++++|++.|++.....         ....++.|+..|+.++|++|+++|+++|.+|..|  .||||+|......  
T Consensus       319 v~ieiIK~LId~Ga~~~r~~---------~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v  389 (631)
T PHA02792        319 VYINVIKCMIDEGATLYRFK---------HINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDV  389 (631)
T ss_pred             ccHHHHHHHHHCCCccccCC---------cchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhH
Confidence            45677799999999874211         1226999999999999999999999999999775  6999998776654  


Q ss_pred             -HHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          239 -DIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       239 -~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                       +++++|+++||++|.+|..|+||||+|+..++.+++++|+++||++|++|.
T Consensus       390 ~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~  441 (631)
T PHA02792        390 LSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTK  441 (631)
T ss_pred             HHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence             468899999999999999999999999999999999999999999998874

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.64  E-value=9.6e-16  Score=152.99  Aligned_cols=97  Identities=24%  Similarity=0.332  Sum_probs=86.8

Q ss_pred             chHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhc-----
Q 022927          193 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPV-----  267 (290)
Q Consensus       193 ~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~-----  267 (290)
                      .++||.|+..|+.++++.|++.|+++|..|..|+||||+|+..|+.+++++|+++|+++|.+|.+|+||||+|+.     
T Consensus       526 ~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~  605 (823)
T PLN03192        526 ASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHK  605 (823)
T ss_pred             hhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHH
Confidence            458999999999999999999999999999999999999999999999999999999999999999999986654     


Q ss_pred             --------------------------cCCHHHHHHHHhCCCCCCCCCC
Q 022927          268 --------------------------TLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       268 --------------------------~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                                                .|+.+++++|+++|+|+|++|.
T Consensus       606 iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~  653 (823)
T PLN03192        606 IFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDH  653 (823)
T ss_pred             HHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCC
Confidence                                      4555666677788888887764

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.63  E-value=4.9e-16  Score=112.51  Aligned_cols=83  Identities=31%  Similarity=0.401  Sum_probs=72.3

Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHH
Q 022927          162 STSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIA  241 (290)
Q Consensus       162 s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv  241 (290)
                      .++.+.++.|++.+.+++.           |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++
T Consensus         7 ~~~~~~~~~ll~~~~~~~~-----------~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~   75 (89)
T PF12796_consen    7 NGNLEILKFLLEKGADINL-----------GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIV   75 (89)
T ss_dssp             TTTHHHHHHHHHTTSTTTS-----------SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHH
T ss_pred             cCCHHHHHHHHHCcCCCCC-----------CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHH
Confidence            4556778888988877665           33499999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCCCCCCC
Q 022927          242 FILMESGANMDCKN  255 (290)
Q Consensus       242 ~~Ll~~Ga~in~~d  255 (290)
                      ++|+++|++++.+|
T Consensus        76 ~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   76 KLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHHTTT-TTSS-
T ss_pred             HHHHHcCCCCCCcC
Confidence            99999999999876

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.63  E-value=1.6e-15  Score=147.57  Aligned_cols=94  Identities=26%  Similarity=0.350  Sum_probs=90.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHH
Q 022927          195 GLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMR  274 (290)
Q Consensus       195 ~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv  274 (290)
                      .|+.|+..|+.+.+++|++.|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv  164 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVV  164 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhC-------CCCCCCCC
Q 022927          275 QKMEED-------KNNVGSTT  288 (290)
Q Consensus       275 ~~Ll~~-------GAdin~~~  288 (290)
                      ++|+++       ||+++..+
T Consensus       165 ~~Ll~~~~~~~~~ga~~~~~~  185 (664)
T PTZ00322        165 QLLSRHSQCHFELGANAKPDS  185 (664)
T ss_pred             HHHHhCCCcccccCCCCCccc
Confidence            999999       88776654

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.63  E-value=4.7e-16  Score=146.42  Aligned_cols=137  Identities=18%  Similarity=0.169  Sum_probs=113.9

Q ss_pred             CCCCccccccCCCCCCCcccccccCCCCCCCCCC--------CCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcc
Q 022927          149 KPKKTENTARSRGSTSNSNFSSIFNPGQVTNGAT--------DKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANF  220 (290)
Q Consensus       149 ~~~~~~~~~~~~~s~~~~~~~~Ll~~g~~~~~~~--------~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~  220 (290)
                      .+.+..+.......++.+.++.+|+.|.......        ..-...+.+|.||||+|+..|+.+.++.|+..|++++.
T Consensus       222 ~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~  301 (929)
T KOG0510|consen  222 NNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINS  301 (929)
T ss_pred             cCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccc
Confidence            3344555556667788888888888776543222        01122344677899999999999999999999999999


Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHH-CC-CCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCC
Q 022927          221 CDKQGMSLLHLAALFNRTDIAFILME-SG-ANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVG  285 (290)
Q Consensus       221 ~d~~g~TpLh~A~~~g~~~iv~~Ll~-~G-a~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin  285 (290)
                      ++.++.||||.|+.+|+++.++-||+ .| ..+|..|..|.||||+|+..||..++++||+.||+.+
T Consensus       302 kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~  368 (929)
T KOG0510|consen  302 KNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFL  368 (929)
T ss_pred             cCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhh
Confidence            99999999999999999999999998 54 5678899999999999999999999999999999876

>PHA02792 ankyrin-like protein; Provisional

Probab=99.62  E-value=8.4e-16  Score=145.14  Aligned_cols=121  Identities=17%  Similarity=0.136  Sum_probs=104.6

Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHH---HHHHHHHCCCCCcccccCCCcHHHHHHHcC
Q 022927          160 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAA---AVKKLLSEGVDANFCDKQGMSLLHLAALFN  236 (290)
Q Consensus       160 ~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~---~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g  236 (290)
                      +..++.+.+++|++.|++++..+..+.     +.||||+|......+   ++++|+++|+++|.+|..|+||||+|+..+
T Consensus       347 a~~gn~eIVelLIs~GADIN~kD~~g~-----~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~  421 (631)
T PHA02792        347 FDNRDPKVVEYILKNGNVVVEDDDNII-----NIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESH  421 (631)
T ss_pred             HHcCCHHHHHHHHHcCCchhhhcCCCC-----ChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcC
Confidence            456778899999999999988776542     236899988776653   688899999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCChhhhhhc----------cCCHHHHHHHHhCCCCCC
Q 022927          237 RTDIAFILMESGANMDCKNAQGESPLDCAPV----------TLQYKMRQKMEEDKNNVG  285 (290)
Q Consensus       237 ~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~----------~g~~~iv~~Ll~~GAdin  285 (290)
                      +.+++++|+++|++++.+|..|+|||++|+.          ....+++++||++|.+++
T Consensus       422 n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i~  480 (631)
T PHA02792        422 SVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTIE  480 (631)
T ss_pred             CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCChh
Confidence            9999999999999999999999999999975          223677999999998875

>PHA02730 ankyrin-like protein; Provisional

Probab=99.62  E-value=1.2e-15  Score=145.56  Aligned_cols=114  Identities=15%  Similarity=0.099  Sum_probs=98.1

Q ss_pred             CcccccccCCCC--CCCCCCCCCCccccccchHHHH---HHHcC---------CHHHHHHHHHCCCCCcccccCCCcHHH
Q 022927          165 NSNFSSIFNPGQ--VTNGATDKPRMEYEVNGEGLRD---AIKNG---------DAAAVKKLLSEGVDANFCDKQGMSLLH  230 (290)
Q Consensus       165 ~~~~~~Ll~~g~--~~~~~~~~~~~~~~~~~t~Lh~---A~~~g---------~~~~v~~Ll~~g~~vn~~d~~g~TpLh  230 (290)
                      .+++++|++.|+  +++..+..+.+       |||.   |...+         ..+++++|+.+|+++|.+|..|+||||
T Consensus       395 ~eIvelLIs~Ga~~dIN~kd~~G~T-------~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh  467 (672)
T PHA02730        395 VNVVRFIVENNGHMAINHVSNNGRL-------CMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLY  467 (672)
T ss_pred             HHHHHHHHHcCCCccccccccCCCc-------hHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHH
Confidence            588899999987  47766665554       8984   33232         235799999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCC-CCCChhhhhhc--cCCHHHHHHHHhCCCCCC
Q 022927          231 LAALFNRTDIAFILMESGANMDCKNA-QGESPLDCAPV--TLQYKMRQKMEEDKNNVG  285 (290)
Q Consensus       231 ~A~~~g~~~iv~~Ll~~Ga~in~~d~-~G~TpL~~A~~--~g~~~iv~~Ll~~GAdin  285 (290)
                      +|+..++.+++++|+++||++|.+|. .|+||||+|+.  .++.+++++|+++|++++
T Consensus       468 ~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~i~  525 (672)
T PHA02730        468 YAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHPTLE  525 (672)
T ss_pred             HHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCCCHH
Confidence            99999999999999999999999997 59999999987  478999999999999875

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.62  E-value=4.5e-16  Score=102.63  Aligned_cols=55  Identities=36%  Similarity=0.634  Sum_probs=33.5

Q ss_pred             HHHCC-CCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhh
Q 022927          211 LLSEG-VDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA  265 (290)
Q Consensus       211 Ll~~g-~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A  265 (290)
                      ||++| +++|.+|..|.||||+|+..|+.+++++|+++|++++.+|.+|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            67888 99999999999999999999999999999999999999999999999987

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.61  E-value=4.7e-15  Score=133.61  Aligned_cols=92  Identities=27%  Similarity=0.398  Sum_probs=87.0

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHH
Q 022927          196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQ  275 (290)
Q Consensus       196 Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~  275 (290)
                      |.-|+..|.+++|+..+..--|+...+..|.|+||-|+..||++||+|||++|+++|+.|.+||||||.|+..++..|++
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ck  633 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCK  633 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHH
Confidence            56799999999999999888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCCCC
Q 022927          276 KMEEDKNNVGST  287 (290)
Q Consensus       276 ~Ll~~GAdin~~  287 (290)
                      .|+++||-|-+.
T Consensus       634 qLVe~GaavfAs  645 (752)
T KOG0515|consen  634 QLVESGAAVFAS  645 (752)
T ss_pred             HHHhccceEEee
Confidence            999999987553

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.61  E-value=6.7e-16  Score=139.67  Aligned_cols=122  Identities=20%  Similarity=0.229  Sum_probs=102.9

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCc---------------------
Q 022927          161 GSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDAN---------------------  219 (290)
Q Consensus       161 ~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn---------------------  219 (290)
                      ...+..++++|++.|++++..+..+|+       |||.|+..|+..++++||..|+++-                     
T Consensus        82 id~~~e~v~~l~e~ga~Vn~~d~e~wt-------Plhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~  154 (527)
T KOG0505|consen   82 IDDNLEMVKFLVENGANVNAQDNEGWT-------PLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDV  154 (527)
T ss_pred             hcccHHHHHHHHHhcCCccccccccCC-------cchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHH
Confidence            344567788888999998888877766       7999988899999988888776422                     


Q ss_pred             --------------------------------------ccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCh
Q 022927          220 --------------------------------------FCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESP  261 (290)
Q Consensus       220 --------------------------------------~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~Tp  261 (290)
                                                            ..+..|-|.||.|+..|..+++++|++.|.+++++|.+||||
T Consensus       155 l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtP  234 (527)
T KOG0505|consen  155 LETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTP  234 (527)
T ss_pred             HHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCc
Confidence                                                  123347899999999999999999999999999999999999


Q ss_pred             hhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          262 LDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       262 L~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      ||.|+..|+.+++++|+++|+++++.++
T Consensus       235 lHAAA~Wg~~~~~elL~~~ga~~d~~t~  262 (527)
T KOG0505|consen  235 LHAAAHWGQEDACELLVEHGADMDAKTK  262 (527)
T ss_pred             ccHHHHhhhHhHHHHHHHhhcccchhhh
Confidence            9999999999999999999999988764

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.60  E-value=1.3e-14  Score=110.38  Aligned_cols=99  Identities=28%  Similarity=0.391  Sum_probs=90.2

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCC
Q 022927          191 VNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQ  270 (290)
Q Consensus       191 ~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~  270 (290)
                      .|.|+||+|+..++.+++++|++.|.+.+..+..|.||||+|+..++.+++++|+++|++++..+..|.||+|+|+..++
T Consensus         6 ~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~   85 (126)
T cd00204           6 DGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGN   85 (126)
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCc
Confidence            45569999999999999999999999988889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCC
Q 022927          271 YKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       271 ~~iv~~Ll~~GAdin~~~~  289 (290)
                      .+++++|+++|.+++..+.
T Consensus        86 ~~~~~~L~~~~~~~~~~~~  104 (126)
T cd00204          86 LDVVKLLLKHGADVNARDK  104 (126)
T ss_pred             HHHHHHHHHcCCCCcccCC
Confidence            9999999999988776653

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;

Probab=99.59  E-value=3.4e-16  Score=103.66  Aligned_cols=54  Identities=33%  Similarity=0.703  Sum_probs=49.8

Q ss_pred             ccccccCCCCCccccccccccccceecCCCCCCcccccCCCCCCcccccccchh
Q 022927            6 LQNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFN   59 (290)
Q Consensus         6 ~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~   59 (290)
                      ..|+.|+++|+++.||||||.||++||..|+.++..++.....+++|||..||+
T Consensus         3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~~~~~~~~~~~rvC~~C~~   56 (57)
T cd00065           3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIPLPSMGGGKPVRVCDSCYE   56 (57)
T ss_pred             CcCcccCccccCCccccccCcCcCCcChHHcCCeeecCcccCCCccEeChHHhC
Confidence            568999999999999999999999999999999999887555799999999986

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.57  E-value=2.1e-15  Score=127.04  Aligned_cols=120  Identities=24%  Similarity=0.290  Sum_probs=104.5

Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHH
Q 022927          160 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD  239 (290)
Q Consensus       160 ~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~  239 (290)
                      +..+...+++.|+..|+.+|..+....+       |||+|+..|+.++|+.||+..+|+|..+..|+||||||+..|.-.
T Consensus        42 akegh~aivemll~rgarvn~tnmgddt-------plhlaaahghrdivqkll~~kadvnavnehgntplhyacfwgydq  114 (448)
T KOG0195|consen   42 AKEGHVAIVEMLLSRGARVNSTNMGDDT-------PLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWGYDQ  114 (448)
T ss_pred             hhcccHHHHHHHHhcccccccccCCCCc-------chhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhhhhcHHH
Confidence            3455567788999999999987755444       899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCC
Q 022927          240 IAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGS  286 (290)
Q Consensus       240 iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~  286 (290)
                      +++-|+..||.+++.|++|.|||..|.-.-...+.++..++|-++|.
T Consensus       115 iaedli~~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~nr  161 (448)
T KOG0195|consen  115 IAEDLISCGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPNR  161 (448)
T ss_pred             HHHHHHhccceeeecccCCCCchhhhchHHHHHHHHHHHHhCCCCCc
Confidence            99999999999999999999999998755455556666677887764

>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]

Probab=99.57  E-value=4.8e-16  Score=139.22  Aligned_cols=57  Identities=28%  Similarity=0.613  Sum_probs=54.0

Q ss_pred             ccccccccCCCCCccccccccccccceecCCCCCCcccccCCCCCCcccccc-----cchhh
Q 022927            4 HDLQNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCA-----DCFNS   60 (290)
Q Consensus         4 ~~~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~-----~C~~~   60 (290)
                      .+.+||.|+.+|++|+||||||+||.|||++|+...+++|.+|+.+.+|||.     .||..
T Consensus       900 ~a~~cmacq~pf~afrrrhhcrncggifcg~cs~asapip~~gl~ka~rvcrpqsnldc~~r  961 (990)
T KOG1819|consen  900 DAEQCMACQMPFNAFRRRHHCRNCGGIFCGKCSCASAPIPEHGLDKAPRVCRPQSNLDCLTR  961 (990)
T ss_pred             cchhhhhccCcHHHHHHhhhhcccCceeecccccCCCCCcccccccCceecCCcccccceee
Confidence            4679999999999999999999999999999999999999999999999999     88765

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.56  E-value=6.6e-15  Score=96.32  Aligned_cols=54  Identities=26%  Similarity=0.411  Sum_probs=31.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHH
Q 022927          225 GMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKME  278 (290)
Q Consensus       225 g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll  278 (290)
                      |+||||+|+..|+.+++++|+++|+++|.+|.+|+||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            456666666666666666666666666666666666666666666666666664

...

>KOG1729 consensus FYVE finger containing protein [General function prediction only]

Probab=99.55  E-value=6e-16  Score=133.31  Aligned_cols=59  Identities=25%  Similarity=0.582  Sum_probs=54.5

Q ss_pred             ccccccccCC-CCCccccccccccccceecCCCCCCcccccCCCCCCcccccccchhhhcc
Q 022927            4 HDLQNLRLIS-HIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSR   63 (290)
Q Consensus         4 ~~~~~~~c~~-~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~   63 (290)
                      +..+||.|+. .|+++.||||||+||.|||..|+.+++.+|... .+++|||+.||..+..
T Consensus       167 ea~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~~l~~~~-~k~~rvC~~CF~el~~  226 (288)
T KOG1729|consen  167 EATECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRFLLPNLS-TKPIRVCDICFEELEK  226 (288)
T ss_pred             cceecccCCCccccHHHHHHHHHhcchHhhhhhhcCcccccccC-CCCceecHHHHHHHhc
Confidence            3467999999 999999999999999999999999999999887 7999999999999964

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.54  E-value=9.1e-15  Score=102.93  Aligned_cols=96  Identities=20%  Similarity=0.218  Sum_probs=81.2

Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHH
Q 022927          162 STSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIA  241 (290)
Q Consensus       162 s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv  241 (290)
                      .+..+.++..+..|.++|..-        .+++|||+|+-+|.+++++||+..|++++.+|++|.|||..|++.||.++|
T Consensus        12 NG~~DeVk~~v~~g~nVn~~~--------ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cV   83 (117)
T KOG4214|consen   12 NGEIDEVKQSVNEGLNVNEIY--------GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCV   83 (117)
T ss_pred             cCcHHHHHHHHHccccHHHHh--------CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHH
Confidence            344555666666676655433        345699999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCCCCCCCCCCCChhhhh
Q 022927          242 FILMESGANMDCKNAQGESPLDCA  265 (290)
Q Consensus       242 ~~Ll~~Ga~in~~d~~G~TpL~~A  265 (290)
                      ++||+.||+-..+..+|.+.+..+
T Consensus        84 klLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   84 KLLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHHcCcccceeCCCchhHHhhc
Confidence            999999999999988897776544

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.53  E-value=9.9e-15  Score=132.17  Aligned_cols=122  Identities=21%  Similarity=0.242  Sum_probs=107.8

Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHH
Q 022927          160 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD  239 (290)
Q Consensus       160 ~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~  239 (290)
                      ...+..+.++.|+..|+.++..+..+.+       +||.++...+.++|++|+++|++||..|..||||||.|+..|+..
T Consensus        48 ~~~~d~~ev~~ll~~ga~~~~~n~DglT-------alhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~  120 (527)
T KOG0505|consen   48 CSRGDLEEVRKLLNRGASPNLCNVDGLT-------ALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLN  120 (527)
T ss_pred             cccccHHHHHHHhccCCCccccCCccch-------hHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHH
Confidence            4567788889999999888777766665       899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCC-----------------------------------------------------------CCCCCCC
Q 022927          240 IAFILMESGANMDC-----------------------------------------------------------KNAQGES  260 (290)
Q Consensus       240 iv~~Ll~~Ga~in~-----------------------------------------------------------~d~~G~T  260 (290)
                      ++++|+.+||++..                                                           .+..|-|
T Consensus       121 i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T  200 (527)
T KOG0505|consen  121 IVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGAT  200 (527)
T ss_pred             HHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccch
Confidence            99999998876432                                                           3345789


Q ss_pred             hhhhhhccCCHHHHHHHHhCCCCCCCCC
Q 022927          261 PLDCAPVTLQYKMRQKMEEDKNNVGSTT  288 (290)
Q Consensus       261 pL~~A~~~g~~~iv~~Ll~~GAdin~~~  288 (290)
                      +||+|+..|+.++.++|+++|.++++.|
T Consensus       201 ~lHvAaa~Gy~e~~~lLl~ag~~~~~~D  228 (527)
T KOG0505|consen  201 ALHVAAANGYTEVAALLLQAGYSVNIKD  228 (527)
T ss_pred             HHHHHHhhhHHHHHHHHHHhccCccccc
Confidence            9999999999999999999999999886

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.52  E-value=1.1e-13  Score=116.14  Aligned_cols=106  Identities=27%  Similarity=0.353  Sum_probs=51.4

Q ss_pred             cccccCCCCCCCCCCCCCCccccccchHHHHHHHcCC-----HHHHHHHHHCCC---CCcccccCCCcHHHHHHHcCCHH
Q 022927          168 FSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGD-----AAAVKKLLSEGV---DANFCDKQGMSLLHLAALFNRTD  239 (290)
Q Consensus       168 ~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~-----~~~v~~Ll~~g~---~vn~~d~~g~TpLh~A~~~g~~~  239 (290)
                      +.+++..|.+++..+..+.+       +||+|+..++     .+++++||+.|+   +.+.+|..|+||||+|+..|+.+
T Consensus        89 ~~~l~~~~~~~~~~~~~g~t-------~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~  161 (235)
T COG0666          89 VKLLLASGADVNAKDADGDT-------PLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDAD  161 (235)
T ss_pred             HHHHHHcCCCcccccCCCCc-------HHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchH
Confidence            34444444444444433333       4555555555     455555555554   23333445555555555555555


Q ss_pred             HHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhC
Q 022927          240 IAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEED  280 (290)
Q Consensus       240 iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  280 (290)
                      ++++|++.|++++..+..|.|+|++|+..++.+++.+|++.
T Consensus       162 ~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~  202 (235)
T COG0666         162 IVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDK  202 (235)
T ss_pred             HHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhc
Confidence            55555555555555555555555555555555555555444

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.51  E-value=6e-14  Score=117.63  Aligned_cols=95  Identities=32%  Similarity=0.423  Sum_probs=90.3

Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCC-----HHHHHHHHHCCC---CCCCCCCCCCChhhhh
Q 022927          194 EGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR-----TDIAFILMESGA---NMDCKNAQGESPLDCA  265 (290)
Q Consensus       194 t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~-----~~iv~~Ll~~Ga---~in~~d~~G~TpL~~A  265 (290)
                      +++|+++..+..+++++|+..|++++.+|..|.||||+|+..++     .+++++|++.|+   ..+.+|..|+||||+|
T Consensus        75 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A  154 (235)
T COG0666          75 LPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWA  154 (235)
T ss_pred             CHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHH
Confidence            38999999999999999999999999999999999999999999     999999999999   6666799999999999


Q ss_pred             hccCCHHHHHHHHhCCCCCCCCC
Q 022927          266 PVTLQYKMRQKMEEDKNNVGSTT  288 (290)
Q Consensus       266 ~~~g~~~iv~~Ll~~GAdin~~~  288 (290)
                      +..|+.+++++|++.|++++..+
T Consensus       155 ~~~~~~~~~~~ll~~~~~~~~~~  177 (235)
T COG0666         155 ALNGDADIVELLLEAGADPNSRN  177 (235)
T ss_pred             HHcCchHHHHHHHhcCCCCcccc
Confidence            99999999999999999998764

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.51  E-value=4.2e-14  Score=92.50  Aligned_cols=54  Identities=35%  Similarity=0.407  Sum_probs=45.9

Q ss_pred             cchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHH
Q 022927          192 NGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILM  245 (290)
Q Consensus       192 ~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll  245 (290)
                      |.|+||+|+..|+.+++++|+++|+++|.+|.+|+||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            457999999999999999999999999999999999999999999999999996

...

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.50  E-value=1.5e-13  Score=104.50  Aligned_cols=111  Identities=28%  Similarity=0.383  Sum_probs=99.8

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHH
Q 022927          161 GSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDI  240 (290)
Q Consensus       161 ~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~i  240 (290)
                      ..+..+.++.|+..+...+..+..+.       ++||.|+..++.+++++|++.|++++..+..|.||+|+|+..++.++
T Consensus        16 ~~~~~~~i~~li~~~~~~~~~~~~g~-------~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~   88 (126)
T cd00204          16 SNGHLEVVKLLLENGADVNAKDNDGR-------TPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDV   88 (126)
T ss_pred             HcCcHHHHHHHHHcCCCCCccCCCCC-------cHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCcHHH
Confidence            34556788889999888755555444       49999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHH
Q 022927          241 AFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKME  278 (290)
Q Consensus       241 v~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll  278 (290)
                      +++|+.+|.+++..+..|.|||++|...++.+++++|+
T Consensus        89 ~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          89 VKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            99999999999999999999999999999999999985

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.48  E-value=8.8e-14  Score=137.82  Aligned_cols=127  Identities=24%  Similarity=0.224  Sum_probs=96.0

Q ss_pred             cccCCCCCCCcccccccCC--CCCCCCCCCCCCccccccchHHH-HHHHcCCHHHHHHHHHCCCC---------------
Q 022927          156 TARSRGSTSNSNFSSIFNP--GQVTNGATDKPRMEYEVNGEGLR-DAIKNGDAAAVKKLLSEGVD---------------  217 (290)
Q Consensus       156 ~~~~~~s~~~~~~~~Ll~~--g~~~~~~~~~~~~~~~~~~t~Lh-~A~~~g~~~~v~~Ll~~g~~---------------  217 (290)
                      .......++...++.+++.  +.+++..+..+.       |||| .|+..++.+++++|++.|+.               
T Consensus        21 ~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~-------t~Lh~~A~~~~~~eiv~lLl~~g~~~~~G~T~Lh~A~~~~   93 (743)
T TIGR00870        21 FLPAAERGDLASVYRDLEEPKKLNINCPDRLGR-------SALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEY   93 (743)
T ss_pred             HHHHHHcCCHHHHHHHhccccccCCCCcCccch-------hHHHHHHHhcChHHHHHHHHhCCCCCCcChHHHHHHHhcc
Confidence            3344566777777777777  666665555444       3777 66667777777777766620               


Q ss_pred             -----------------------Ccc----cccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC--------------C
Q 022927          218 -----------------------ANF----CDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN--------------A  256 (290)
Q Consensus       218 -----------------------vn~----~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d--------------~  256 (290)
                                             ++.    .+..|.||||+|+..|+.+++++|+++||+++.++              .
T Consensus        94 ~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~  173 (743)
T TIGR00870        94 VDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFY  173 (743)
T ss_pred             HHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCccc
Confidence                                   000    11358999999999999999999999999998753              3


Q ss_pred             CCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          257 QGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       257 ~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      .|.||||+|+..|+.+++++|+++|||+|.+|.
T Consensus       174 ~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~  206 (743)
T TIGR00870       174 HGESPLNAAACLGSPSIVALLSEDPADILTADS  206 (743)
T ss_pred             ccccHHHHHHHhCCHHHHHHHhcCCcchhhHhh
Confidence            589999999999999999999999999998764

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.47  E-value=5.8e-14  Score=131.61  Aligned_cols=113  Identities=22%  Similarity=0.167  Sum_probs=61.2

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHH
Q 022927          161 GSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDI  240 (290)
Q Consensus       161 ~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~i  240 (290)
                      ..+...++++|++..+..+..+..+..       |||+|++.|+.++++.||.++..+|.....|.||||.|+..|+.++
T Consensus        58 Lng~~~is~llle~ea~ldl~d~kg~~-------plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dv  130 (854)
T KOG0507|consen   58 LNGQNQISKLLLDYEALLDLCDTKGIL-------PLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEV  130 (854)
T ss_pred             hcCchHHHHHHhcchhhhhhhhccCcc-------eEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHH
Confidence            344445555555555555554433333       5555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhC
Q 022927          241 AFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEED  280 (290)
Q Consensus       241 v~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  280 (290)
                      +.+||.+|+|.-++|..+.|+|.+|++.|..+++++|++.
T Consensus       131 v~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~  170 (854)
T KOG0507|consen  131 VFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQK  170 (854)
T ss_pred             HHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhh
Confidence            5555555555555555555555555555555555555544

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.46  E-value=2.2e-13  Score=114.80  Aligned_cols=83  Identities=25%  Similarity=0.251  Sum_probs=43.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCccc-ccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHH
Q 022927          195 GLRDAIKNGDAAAVKKLLSEGVDANFC-DKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKM  273 (290)
Q Consensus       195 ~Lh~A~~~g~~~~v~~Ll~~g~~vn~~-d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~i  273 (290)
                      +|..|+..|+.+++++||+.|+|+|.. +..+.||||+|+..|+.++.++|++.|+.....|.-|+|+-.+|+.-|+.++
T Consensus        48 ~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~C  127 (396)
T KOG1710|consen   48 VLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHEC  127 (396)
T ss_pred             HHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHH
Confidence            455555555555555555555555432 2344555555555555555555555555555555555555555555555555


Q ss_pred             HHHH
Q 022927          274 RQKM  277 (290)
Q Consensus       274 v~~L  277 (290)
                      |..+
T Consensus       128 V~iI  131 (396)
T KOG1710|consen  128 VAII  131 (396)
T ss_pred             HHHH
Confidence            5444

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.45  E-value=1.5e-13  Score=124.15  Aligned_cols=93  Identities=25%  Similarity=0.210  Sum_probs=82.6

Q ss_pred             ccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCChhhhh
Q 022927          187 MEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN-AQGESPLDCA  265 (290)
Q Consensus       187 ~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d-~~G~TpL~~A  265 (290)
                      .+.+.|.|+||-|+..||.+||+|||+.|++||..|.+||||||.|+..++..+++.|++.|+-|.+.. .++.||..-+
T Consensus       578 qpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKC  657 (752)
T KOG0515|consen  578 QPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKC  657 (752)
T ss_pred             CCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhc
Confidence            345667789999999999999999999999999999999999999999999999999999999987764 4688888765


Q ss_pred             h--ccCCHHHHHHHHh
Q 022927          266 P--VTLQYKMRQKMEE  279 (290)
Q Consensus       266 ~--~~g~~~iv~~Ll~  279 (290)
                      -  +.|+.++.+||-.
T Consensus       658 ee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  658 EEMEEGYDQCSQYLYG  673 (752)
T ss_pred             chhhhhHHHHHHHHHH
Confidence            3  5788999999854

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.44  E-value=9.6e-14  Score=130.16  Aligned_cols=99  Identities=22%  Similarity=0.238  Sum_probs=93.8

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCC
Q 022927          191 VNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQ  270 (290)
Q Consensus       191 ~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~  270 (290)
                      .|.|+||.|+.+|+.+++++|+++.+-++..|..|.+|||+|++.|+.+++++|+.++..+|+.+..|.||||.|+++|+
T Consensus        48 ~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh  127 (854)
T KOG0507|consen   48 SGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGH  127 (854)
T ss_pred             cchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcc
Confidence            45569999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCC
Q 022927          271 YKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       271 ~~iv~~Ll~~GAdin~~~~  289 (290)
                      .+++.+|+++|+|.-..|.
T Consensus       128 ~dvv~~Ll~~~adp~i~nn  146 (854)
T KOG0507|consen  128 LEVVFYLLKKNADPFIRNN  146 (854)
T ss_pred             hHHHHHHHhcCCCccccCc
Confidence            9999999999999877653

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.44  E-value=2.5e-13  Score=128.63  Aligned_cols=100  Identities=26%  Similarity=0.261  Sum_probs=90.4

Q ss_pred             ccccchHHHHHHHcCCHHHHHHHHHCCCCCccc---------c--------------cCCCcHHHHHHHcCCHHHHHHHH
Q 022927          189 YEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFC---------D--------------KQGMSLLHLAALFNRTDIAFILM  245 (290)
Q Consensus       189 ~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~---------d--------------~~g~TpLh~A~~~g~~~iv~~Ll  245 (290)
                      +-.|.||||.|+.+.+.++|++||+.||||+++         |              ..|..||-+||..++.+++++|+
T Consensus       181 eY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl  260 (782)
T KOG3676|consen  181 EYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLL  260 (782)
T ss_pred             hhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHH
Confidence            346888999999999999999999999999864         1              14778999999999999999999


Q ss_pred             HCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCC--CCCCC
Q 022927          246 ESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNN--VGSTT  288 (290)
Q Consensus       246 ~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd--in~~~  288 (290)
                      ++|||++++|..|+|.||+.+..-..+|-.++|++||+  ..++|
T Consensus       261 ~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N  305 (782)
T KOG3676|consen  261 AHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRN  305 (782)
T ss_pred             hcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccc
Confidence            99999999999999999999999999999999999999  55554

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.42  E-value=2.5e-13  Score=134.56  Aligned_cols=95  Identities=20%  Similarity=0.140  Sum_probs=84.3

Q ss_pred             cccchHHHHHHHcCCHHHHHHHHHCCCCCcccc--------------cCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Q 022927          190 EVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCD--------------KQGMSLLHLAALFNRTDIAFILMESGANMDCKN  255 (290)
Q Consensus       190 ~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d--------------~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d  255 (290)
                      ..|.||||+|+..|+.++|++||++|++++.++              .+|.||||+|+..|+.+++++|+++|+|++.+|
T Consensus       126 ~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d  205 (743)
T TIGR00870       126 TPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTAD  205 (743)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHh
Confidence            457889999999999999999999999999753              368999999999999999999999999999999


Q ss_pred             CCCCChhhhhhccC---------CHHHHHHHHhCCCCC
Q 022927          256 AQGESPLDCAPVTL---------QYKMRQKMEEDKNNV  284 (290)
Q Consensus       256 ~~G~TpL~~A~~~g---------~~~iv~~Ll~~GAdi  284 (290)
                      ..|+||||+|+..+         ...+.+++++.+++.
T Consensus       206 ~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~  243 (743)
T TIGR00870       206 SLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKL  243 (743)
T ss_pred             hhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999886         344667777777665

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PTZ00303 phosphatidylinositol kinase; Provisional

Probab=99.41  E-value=7.8e-14  Score=130.52  Aligned_cols=56  Identities=23%  Similarity=0.363  Sum_probs=43.8

Q ss_pred             ccccccCCCCCcc-----ccccccccccceecCCCCCCccccc-----CCCC---CCcccccccchhhh
Q 022927            6 LQNLRLISHIRSN-----LLQHHCRCCGRTLCHEHSSDQMTLP-----QFGI---HTNVRVCADCFNSS   61 (290)
Q Consensus         6 ~~~~~c~~~f~~~-----~rrhhCr~cg~v~C~~c~~~~~~~~-----~~~~---~~~~rvC~~C~~~~   61 (290)
                      +.|+.|+++|+++     .||||||+||+|||+.||+++..++     ..+.   ..+.|||+.||..+
T Consensus       461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs~yp~aKLpKPgsseE~ppRRVCD~CYdq~  529 (1374)
T PTZ00303        461 DSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRAHYSFAKLAKPGSSDEAEERLVCDTCYKEY  529 (1374)
T ss_pred             CcccCcCCcccccccccccccccccCCccccCccccCCcccCcccccCCCCCcccccccchhHHHHHHH
Confidence            4599999999865     6999999999999999999876432     2221   23568999999655

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.37  E-value=8.8e-13  Score=111.25  Aligned_cols=97  Identities=27%  Similarity=0.258  Sum_probs=90.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCChhhhhhccCCHH
Q 022927          194 EGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCK-NAQGESPLDCAPVTLQYK  272 (290)
Q Consensus       194 t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~-d~~G~TpL~~A~~~g~~~  272 (290)
                      .+|..++..++.+.+..||..--++|.+|..|+++|..|+..|+.+++++||+.|+|+|.. +..++||||.|+..|+.+
T Consensus        14 ~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~d   93 (396)
T KOG1710|consen   14 SPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQD   93 (396)
T ss_pred             hHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCch
Confidence            3899999999999999999876779999999999999999999999999999999999976 567999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCC
Q 022927          273 MRQKMEEDKNNVGSTTSV  290 (290)
Q Consensus       273 iv~~Ll~~GAdin~~~~~  290 (290)
                      +.++|++.||.....|+|
T Consensus        94 vcrllldaGa~~~~vNsv  111 (396)
T KOG1710|consen   94 VCRLLLDAGARMYLVNSV  111 (396)
T ss_pred             HHHHHHhccCccccccch
Confidence            999999999999888764

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.34  E-value=1.4e-12  Score=123.68  Aligned_cols=119  Identities=23%  Similarity=0.257  Sum_probs=104.9

Q ss_pred             CCCCcccccccCCCCCCCCCCCC-------C-----Ccc----ccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCC
Q 022927          162 STSNSNFSSIFNPGQVTNGATDK-------P-----RME----YEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQG  225 (290)
Q Consensus       162 s~~~~~~~~Ll~~g~~~~~~~~~-------~-----~~~----~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g  225 (290)
                      ..+.+.+++|+..|++++.+-..       .     .+.    .-.|..||-+|+..+..+++++|+++|+|+|.+|.+|
T Consensus       194 ~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~G  273 (782)
T KOG3676|consen  194 NRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNG  273 (782)
T ss_pred             hccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCC
Confidence            44567889999999999754321       1     111    2347789999999999999999999999999999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCCChhhhhhccCCHHHHHHHHhC
Q 022927          226 MSLLHLAALFNRTDIAFILMESGAN--MDCKNAQGESPLDCAPVTLQYKMRQKMEED  280 (290)
Q Consensus       226 ~TpLh~A~~~g~~~iv~~Ll~~Ga~--in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  280 (290)
                      +|.||..+..-..++.+++|++|++  ..++|++|-|||.+|+..|..+|.+.+++.
T Consensus       274 NTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  274 NTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            9999999999999999999999999  999999999999999999999999999997

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.32  E-value=2.2e-12  Score=84.88  Aligned_cols=55  Identities=31%  Similarity=0.408  Sum_probs=32.1

Q ss_pred             ccCCC-CCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHH
Q 022927          171 IFNPG-QVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLA  232 (290)
Q Consensus       171 Ll~~g-~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A  232 (290)
                      ||+.| .+++..+..+.+       |||+|+..|+.+++++||+.|++++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T-------~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNT-------PLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS---------HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCc-------HHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            45666 677777766665       99999999999999999999999999999999999997

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.31  E-value=3.5e-12  Score=124.37  Aligned_cols=102  Identities=25%  Similarity=0.250  Sum_probs=91.6

Q ss_pred             cCCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCC
Q 022927          158 RSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR  237 (290)
Q Consensus       158 ~~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~  237 (290)
                      ..+..++...++.|+..|++++..+..+.+       |||+|+..|+.+++++||++|+++|.+|..|+||||+|+..|+
T Consensus        88 ~aa~~G~~~~vk~LL~~Gadin~~d~~G~T-------pLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~  160 (664)
T PTZ00322         88 QLAASGDAVGARILLTGGADPNCRDYDGRT-------PLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGF  160 (664)
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCcCCCCCc-------HHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCc
Confidence            345677888899999999999887766554       9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHC-------CCCCCCCCCCCCChhhhhh
Q 022927          238 TDIAFILMES-------GANMDCKNAQGESPLDCAP  266 (290)
Q Consensus       238 ~~iv~~Ll~~-------Ga~in~~d~~G~TpL~~A~  266 (290)
                      .+++++|+++       |++++..+..|.+|+..+.
T Consensus       161 ~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        161 REVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            9999999999       9999999988888877554

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=99.15  E-value=1.5e-10  Score=104.15  Aligned_cols=86  Identities=27%  Similarity=0.385  Sum_probs=81.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCcccc-cCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHH
Q 022927          195 GLRDAIKNGDAAAVKKLLSEGVDANFCD-KQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKM  273 (290)
Q Consensus       195 ~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d-~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~i  273 (290)
                      .||..++.|+.++.-.||..|+++|..+ ..|.||||.|+..|+.--+++|+-+|||+++.|..|.||+.+|-..||-++
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~l  215 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHEL  215 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHH
Confidence            5999999999999999999999999988 579999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhC
Q 022927          274 RQKMEED  280 (290)
Q Consensus       274 v~~Ll~~  280 (290)
                      .+.|++.
T Consensus       216 aeRl~e~  222 (669)
T KOG0818|consen  216 AERLVEI  222 (669)
T ss_pred             HHHHHHH
Confidence            8888763

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.14  E-value=2.2e-11  Score=118.25  Aligned_cols=121  Identities=21%  Similarity=0.232  Sum_probs=107.6

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCccc-ccCCCcHHHHHHHcCCHH
Q 022927          161 GSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFC-DKQGMSLLHLAALFNRTD  239 (290)
Q Consensus       161 ~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~-d~~g~TpLh~A~~~g~~~  239 (290)
                      ..+..+.+++|+..|+++..++..+..       ||++|+-.||..+|+.||.+.++++.. |+.+.|+|-+|+..|+.+
T Consensus       766 aggh~e~vellv~rganiehrdkkgf~-------plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~  838 (2131)
T KOG4369|consen  766 AGGHREEVELLVVRGANIEHRDKKGFV-------PLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTR  838 (2131)
T ss_pred             cCccHHHHHHHHHhcccccccccccch-------hhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcch
Confidence            344567789999999999888887776       899999999999999999999998875 578999999999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCC
Q 022927          240 IAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT  288 (290)
Q Consensus       240 iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~  288 (290)
                      ++++||..|++-..++-..+|||.+|...|+.+||.+||.+|+.||.+.
T Consensus       839 vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrt  887 (2131)
T KOG4369|consen  839 VVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRT  887 (2131)
T ss_pred             HHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhccccccccc
Confidence            9999999999999999999999999999999999999999999988764

>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms]

Probab=99.09  E-value=4.5e-11  Score=116.26  Aligned_cols=54  Identities=20%  Similarity=0.415  Sum_probs=47.2

Q ss_pred             cccccccccCCCCCccccccccccccceecCCCCCCcccccCCCCCCcccccccc
Q 022927            3 HHDLQNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADC   57 (290)
Q Consensus         3 ~~~~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C   57 (290)
                      ..+++||.|..+|++++||||||+||+|||+.|++.++.+.... ...-|||..|
T Consensus       555 se~pncm~clqkft~ikrrhhcRacgkVlcgvccnek~~leyl~-e~~~rv~nV~  608 (1287)
T KOG1841|consen  555 SEAPNCMDCLQKFTPIKRRHHCRACGKVLCGVCCNEKSALEYLS-ESEGRVSNVD  608 (1287)
T ss_pred             ccCchHHHHHhhcccccccccchhccceeehhhcchhhhhhhcC-cccccccccc
Confidence            35789999999999999999999999999999999999887664 5666777766

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.08  E-value=5.5e-11  Score=115.63  Aligned_cols=123  Identities=21%  Similarity=0.242  Sum_probs=101.7

Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccc-cCCCcHHHHHHHcCCH
Q 022927          160 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCD-KQGMSLLHLAALFNRT  238 (290)
Q Consensus       160 ~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d-~~g~TpLh~A~~~g~~  238 (290)
                      ++.+...++..||..|..++.+.-     ...|..||+.|..+|+.+.++.||+.|.|+|..- .+.+|+|-+|+..|+.
T Consensus       865 ~Sggy~~iI~~llS~GseInSrtg-----SklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~  939 (2131)
T KOG4369|consen  865 RSGGYTKIIHALLSSGSEINSRTG-----SKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRP  939 (2131)
T ss_pred             cCcchHHHHHHHhhcccccccccc-----cccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcc
Confidence            344455666677777766655432     2234558999999999999999999999998765 4678999999999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCC
Q 022927          239 DIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGST  287 (290)
Q Consensus       239 ~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~  287 (290)
                      +++.+||.+.+++..+-..|.|||+-++..|+.++-++||.+|||+|+.
T Consensus       940 evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nas  988 (2131)
T KOG4369|consen  940 EVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNAS  988 (2131)
T ss_pred             hHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccC
Confidence            9999999999999999999999999999999999999999999999874

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.07  E-value=1.4e-10  Score=103.90  Aligned_cols=89  Identities=26%  Similarity=0.332  Sum_probs=84.3

Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCChhhhhhccCCHH
Q 022927          194 EGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMES-GANMDCKNAQGESPLDCAPVTLQYK  272 (290)
Q Consensus       194 t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~-Ga~in~~d~~G~TpL~~A~~~g~~~  272 (290)
                      ..+++|++.|++..++.+.-.|.|++.+|.+.+|+||.|+..|+++++++||+. +.+++.+|..|+|||.-|...+|.+
T Consensus       508 i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~  587 (622)
T KOG0506|consen  508 INVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKE  587 (622)
T ss_pred             hhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHH
Confidence            369999999999999999999999999999999999999999999999999987 9999999999999999999999999


Q ss_pred             HHHHHHhCCC
Q 022927          273 MRQKMEEDKN  282 (290)
Q Consensus       273 iv~~Ll~~GA  282 (290)
                      ++++|.++-.
T Consensus       588 v~k~L~~~~~  597 (622)
T KOG0506|consen  588 VVKLLEEAQY  597 (622)
T ss_pred             HHHHHHHHhc
Confidence            9999987643

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=99.05  E-value=2.7e-10  Score=104.11  Aligned_cols=87  Identities=24%  Similarity=0.371  Sum_probs=81.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCC--CcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCH
Q 022927          194 EGLRDAIKNGDAAAVKKLLSEGVD--ANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQY  271 (290)
Q Consensus       194 t~Lh~A~~~g~~~~v~~Ll~~g~~--vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~  271 (290)
                      +.||+|++.|+-++|++||++|..  ++..|..|.|+||-|+..++..+.++|++.||.+...|..|.||-..|.+.|+.
T Consensus       901 sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~  980 (1004)
T KOG0782|consen  901 SLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDP  980 (1004)
T ss_pred             hHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHHHHhcCCc
Confidence            379999999999999999999865  677889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhC
Q 022927          272 KMRQKMEED  280 (290)
Q Consensus       272 ~iv~~Ll~~  280 (290)
                      +++.||..+
T Consensus       981 dlaayle~r  989 (1004)
T KOG0782|consen  981 DLAAYLESR  989 (1004)
T ss_pred             hHHHHHhhh
Confidence            999999764

>PF13606 Ank_3: Ankyrin repeat

Probab=99.04  E-value=2e-10  Score=65.17  Aligned_cols=28  Identities=21%  Similarity=0.323  Sum_probs=15.5

Q ss_pred             CCChhhhhhccCCHHHHHHHHhCCCCCC
Q 022927          258 GESPLDCAPVTLQYKMRQKMEEDKNNVG  285 (290)
Q Consensus       258 G~TpL~~A~~~g~~~iv~~Ll~~GAdin  285 (290)
                      |+||||+|+..|+.+++++|+++|+|+|
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            5555555555555555555555555554

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.01  E-value=8.7e-10  Score=100.94  Aligned_cols=90  Identities=22%  Similarity=0.198  Sum_probs=80.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCC--Cc--ccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCC
Q 022927          195 GLRDAIKNGDAAAVKKLLSEGVD--AN--FCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQ  270 (290)
Q Consensus       195 ~Lh~A~~~g~~~~v~~Ll~~g~~--vn--~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~  270 (290)
                      .|..|+...++..+-+||.+|..  +|  ..+.+|+|+||+|+..|+..+.++|+-+|+|+-++|..|+|+|.||-+.|.
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhccc
Confidence            47888888999999999999854  33  235678999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCC
Q 022927          271 YKMRQKMEEDKNNV  284 (290)
Q Consensus       271 ~~iv~~Ll~~GAdi  284 (290)
                      .+++.+||++|.--
T Consensus       707 qec~d~llq~gcp~  720 (749)
T KOG0705|consen  707 QECIDVLLQYGCPD  720 (749)
T ss_pred             HHHHHHHHHcCCCc
Confidence            99999999999743

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.98  E-value=2.5e-10  Score=108.29  Aligned_cols=76  Identities=26%  Similarity=0.420  Sum_probs=71.3

Q ss_pred             cchHHHHHHHcCCHHHHHHHHHCCCCCccccc-CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhc
Q 022927          192 NGEGLRDAIKNGDAAAVKKLLSEGVDANFCDK-QGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPV  267 (290)
Q Consensus       192 ~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~-~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~  267 (290)
                      |+++||.|+..+..+++++||++|+|++.+|. .|+||||-|+.+|+++++-+||.+|+.+.++|.+|..||+...+
T Consensus        52 GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen   52 GRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             ccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHHHHhh
Confidence            44489999999999999999999999999995 79999999999999999999999999999999999999997765

>PF13606 Ank_3: Ankyrin repeat

Probab=98.98  E-value=7.8e-10  Score=62.70  Aligned_cols=30  Identities=37%  Similarity=0.517  Sum_probs=24.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCC
Q 022927          224 QGMSLLHLAALFNRTDIAFILMESGANMDC  253 (290)
Q Consensus       224 ~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~  253 (290)
                      +|+||||+|+..|+.+++++||++|+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            478888888888888888888888888873

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.96  E-value=6.5e-10  Score=64.69  Aligned_cols=31  Identities=13%  Similarity=0.243  Sum_probs=15.7

Q ss_pred             CCChhhhhhccCCHHHHHHHHhCCCCCCCCC
Q 022927          258 GESPLDCAPVTLQYKMRQKMEEDKNNVGSTT  288 (290)
Q Consensus       258 G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~  288 (290)
                      |+||||+|+..|+.+++++|+++||+++++|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            4455555555555555555555555555444

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.94  E-value=1.7e-09  Score=98.47  Aligned_cols=86  Identities=27%  Similarity=0.302  Sum_probs=76.1

Q ss_pred             HHHHHHHcCCHHHHHHHH--HCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHH
Q 022927          195 GLRDAIKNGDAAAVKKLL--SEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYK  272 (290)
Q Consensus       195 ~Lh~A~~~g~~~~v~~Ll--~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~  272 (290)
                      +||+++...+.+-...++  +.+..++..|..|.||||+|+..|+...+++|+.+||++.++|.+||+|||.|+..|+.+
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q  102 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQ  102 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHH
Confidence            599999998887555433  335678889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhC
Q 022927          273 MRQKMEED  280 (290)
Q Consensus       273 iv~~Ll~~  280 (290)
                      ++..+|.+
T Consensus       103 ~i~~vlr~  110 (560)
T KOG0522|consen  103 IITEVLRH  110 (560)
T ss_pred             HHHHHHHH
Confidence            98887764

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.92  E-value=2e-09  Score=62.59  Aligned_cols=33  Identities=30%  Similarity=0.533  Sum_probs=27.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Q 022927          224 QGMSLLHLAALFNRTDIAFILMESGANMDCKNA  256 (290)
Q Consensus       224 ~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~  256 (290)
                      +|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            478888888888888888888888888887763

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.92  E-value=2.5e-10  Score=98.66  Aligned_cols=72  Identities=28%  Similarity=0.573  Sum_probs=64.3

Q ss_pred             cccccCCCCCcc-----------ccccccccccceecCCCCCCcccccCCCCCCcccccccchhhhcccCCCCCCccCCC
Q 022927            7 QNLRLISHIRSN-----------LLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTGKDNLQVSSDG   75 (290)
Q Consensus         7 ~~~~c~~~f~~~-----------~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~~~~~~~~~~~~   75 (290)
                      .|..|+.+|-+.           .|.||||.||..||+.|++++...|.+|+...+|+|+.||..+....+.+++...+.
T Consensus       284 ~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei  363 (404)
T KOG1409|consen  284 SCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEI  363 (404)
T ss_pred             hhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCcccccccc
Confidence            377888888543           379999999999999999999999999999999999999999998888888888888


Q ss_pred             CCC
Q 022927           76 VNS   78 (290)
Q Consensus        76 ~~~   78 (290)
                      ..+
T Consensus       364 ~tg  366 (404)
T KOG1409|consen  364 KTG  366 (404)
T ss_pred             ccc
Confidence            777

>KOG1842 consensus FYVE finger-containing protein [General function prediction only]

Probab=98.89  E-value=1.1e-10  Score=103.78  Aligned_cols=59  Identities=24%  Similarity=0.424  Sum_probs=44.5

Q ss_pred             cccccccCCCCCccccccccccccceecCCCCCCcc------------------cccC----CCCCCcccccccchhhhc
Q 022927            5 DLQNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQM------------------TLPQ----FGIHTNVRVCADCFNSSS   62 (290)
Q Consensus         5 ~~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~------------------~~~~----~~~~~~~rvC~~C~~~~~   62 (290)
                      .+-|-.|..+|++.+||||||.||.|+|.+|+..-.                  +..+    .....++|+|..|...+.
T Consensus       180 V~~CP~Ca~~F~l~rRrHHCRLCG~VmC~~C~k~iSle~a~~ltsss~~dt~~e~~qq~~~lH~~~~~iRlC~hCl~~L~  259 (505)
T KOG1842|consen  180 VQFCPECANSFGLTRRRHHCRLCGRVMCRDCSKFISLEIAIGLTSSSASDTHFEPNQQKDDLHQHPQPIRLCMHCLDNLF  259 (505)
T ss_pred             ccccccccchhhhHHHhhhhhhcchHHHHHHHHhcChHHHHHHhhccCCCCCcCcccCcccccCChhHhHHHHHHHHHHH
Confidence            345888999999999999999999999999986432                  0000    011356899999998775


Q ss_pred             c
Q 022927           63 R   63 (290)
Q Consensus        63 ~   63 (290)
                      .
T Consensus       260 ~  260 (505)
T KOG1842|consen  260 R  260 (505)
T ss_pred             H
Confidence            3

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.87  E-value=5.9e-10  Score=105.87  Aligned_cols=72  Identities=18%  Similarity=0.201  Sum_probs=68.2

Q ss_pred             CcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC-CCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          218 ANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQ-GESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       218 vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~-G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      .|++|.+|+|+||+|+..+..+++++||++|+|++.+|.. |+||||.|+..|+.+++-+||.+|+...+.|+
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dk  117 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDK  117 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecc
Confidence            7889999999999999999999999999999999999974 99999999999999999999999998877765

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.72  E-value=5.2e-08  Score=85.53  Aligned_cols=83  Identities=28%  Similarity=0.343  Sum_probs=70.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHH
Q 022927          195 GLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMR  274 (290)
Q Consensus       195 ~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv  274 (290)
                      -|..|++.|+.+.|+.|++.|+++|..|.+...||.+|...||.+++++||++||-...-..+|.-.+.-|.   +..|-
T Consensus        39 elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~YgaL---nd~IR  115 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCHYGAL---NDRIR  115 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhhhhhh---hHHHH
Confidence            599999999999999999999999999999999999999999999999999999988776777877755443   34455


Q ss_pred             HHHHhC
Q 022927          275 QKMEED  280 (290)
Q Consensus       275 ~~Ll~~  280 (290)
                      ++||.+
T Consensus       116 ~mllsy  121 (516)
T KOG0511|consen  116 RMLLSY  121 (516)
T ss_pred             HHHHHH
Confidence            555543

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.64  E-value=2.2e-08  Score=98.13  Aligned_cols=93  Identities=29%  Similarity=0.377  Sum_probs=84.3

Q ss_pred             CccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhh
Q 022927          186 RMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA  265 (290)
Q Consensus       186 ~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A  265 (290)
                      ......|.++||.|+..|...++++||++|+++|..|..|.||||.+...|+...+.+|+++||+.++.+.+|++||++|
T Consensus       650 ~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a  729 (785)
T KOG0521|consen  650 PVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIA  729 (785)
T ss_pred             chhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHH
Confidence            33444567899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCHHHHHHHH
Q 022927          266 PVTLQYKMRQKME  278 (290)
Q Consensus       266 ~~~g~~~iv~~Ll  278 (290)
                      ....+.+++-+|.
T Consensus       730 ~~~~~~d~~~l~~  742 (785)
T KOG0521|consen  730 MEAANADIVLLLR  742 (785)
T ss_pred             hhhccccHHHHHh
Confidence            8777777766654

>KOG1843 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.56  E-value=2.9e-08  Score=87.65  Aligned_cols=55  Identities=15%  Similarity=0.013  Sum_probs=48.2

Q ss_pred             cccccCCCCC-ccccccccccccceecCCCCCCcccccC-CCCCCcccccccchhhh
Q 022927            7 QNLRLISHIR-SNLLQHHCRCCGRTLCHEHSSDQMTLPQ-FGIHTNVRVCADCFNSS   61 (290)
Q Consensus         7 ~~~~c~~~f~-~~~rrhhCr~cg~v~C~~c~~~~~~~~~-~~~~~~~rvC~~C~~~~   61 (290)
                      -||+|+.+|+ ++.||||||.|+.+||-.|+..+..+|. +....++|||+.|+..+
T Consensus       162 lfagvSvegsaI~erR~anR~~yg~~cra~~ilsg~vp~p~a~d~l~RVldS~~~nl  218 (473)
T KOG1843|consen  162 LFAGVSVEGSAIIERREANRKFYGIFCRAKSILSGLVPVPFAADPLQRVLDSCAFNL  218 (473)
T ss_pred             ceeeeecccceeeecchhhhhhcCccchhhhhhccCCCCCcccCCHHHHHhhHhhcc
Confidence            4899999999 8899999999999999999988766554 34478899999999888

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.55  E-value=1.2e-07  Score=75.82  Aligned_cols=65  Identities=17%  Similarity=0.103  Sum_probs=39.1

Q ss_pred             CCCcccccCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCChhhhhhccCCHHHHHHHHhC
Q 022927          216 VDANFCDKQGMSLLHLAALFNRTDIAFILMESG-ANMDCKNAQGESPLDCAPVTLQYKMRQKMEED  280 (290)
Q Consensus       216 ~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~G-a~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  280 (290)
                      .++|.+|.+|||+|+.|+..|+.+.+.+|+.+| +.+...|..|.+++.+|-+.|..+.+.+|.+.
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            455566666666666666666666666666665 55666666666666666666666666655554

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.55  E-value=3.5e-07  Score=84.15  Aligned_cols=95  Identities=20%  Similarity=0.238  Sum_probs=84.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCCChhhhhhccCCHH
Q 022927          195 GLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGAN--MDCKNAQGESPLDCAPVTLQYK  272 (290)
Q Consensus       195 ~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~--in~~d~~G~TpL~~A~~~g~~~  272 (290)
                      -|..|+..+++--++.+-.+|.++-.++.+..+.||+|+..|+-+||+|||++|-.  ++..|..|.|+||-|+..++..
T Consensus       869 eil~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~  948 (1004)
T KOG0782|consen  869 EILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRA  948 (1004)
T ss_pred             HHHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchH
Confidence            37888888888777777778999989999999999999999999999999999853  5778899999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCC
Q 022927          273 MRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       273 iv~~Ll~~GAdin~~~~  289 (290)
                      +.++|+++||.+..+|.
T Consensus       949 vc~~lvdagasl~ktd~  965 (1004)
T KOG0782|consen  949 VCQLLVDAGASLRKTDS  965 (1004)
T ss_pred             HHHHHHhcchhheeccc
Confidence            99999999998876653

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.55  E-value=1.1e-07  Score=87.38  Aligned_cols=83  Identities=17%  Similarity=0.154  Sum_probs=68.9

Q ss_pred             ccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHH
Q 022927          167 NFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILME  246 (290)
Q Consensus       167 ~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~  246 (290)
                      .+-+||.+|......+.   .....|.|+||+|+..|++.+.++|+-+|+|+-.+|.+|+|+|.||-..|..+++..||.
T Consensus       639 t~~lLLAhg~~~e~~~t---~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec~d~llq  715 (749)
T KOG0705|consen  639 TAILLLAHGSREEVNET---CGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQECIDVLLQ  715 (749)
T ss_pred             HHHHHHhccCchhhhcc---ccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHHHHHHHHH
Confidence            34556677765543322   233467889999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC
Q 022927          247 SGANMD  252 (290)
Q Consensus       247 ~Ga~in  252 (290)
                      +|..-+
T Consensus       716 ~gcp~e  721 (749)
T KOG0705|consen  716 YGCPDE  721 (749)
T ss_pred             cCCCcc
Confidence            987543

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.31  E-value=1.2e-06  Score=79.47  Aligned_cols=82  Identities=21%  Similarity=0.160  Sum_probs=68.6

Q ss_pred             CCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCH
Q 022927          159 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRT  238 (290)
Q Consensus       159 ~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~  238 (290)
                      ...+++....=.||..|++.|.....      .|.||||.|++.|...-+++|+-+|+|++..|..|+||+.||-..||.
T Consensus       140 svRt~nlet~LRll~lGA~~N~~hpe------kg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~  213 (669)
T KOG0818|consen  140 SVRTGNLETCLRLLSLGAQANFFHPE------KGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHH  213 (669)
T ss_pred             HhhcccHHHHHHHHHcccccCCCCcc------cCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCch
Confidence            34555555555678889998876643      345799999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 022927          239 DIAFILME  246 (290)
Q Consensus       239 ~iv~~Ll~  246 (290)
                      ++.+-|++
T Consensus       214 ~laeRl~e  221 (669)
T KOG0818|consen  214 ELAERLVE  221 (669)
T ss_pred             HHHHHHHH
Confidence            88877765

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.30  E-value=2.4e-07  Score=83.57  Aligned_cols=87  Identities=22%  Similarity=0.187  Sum_probs=76.8

Q ss_pred             cccCCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHC-CCCCcccccCCCcHHHHHHH
Q 022927          156 TARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSE-GVDANFCDKQGMSLLHLAAL  234 (290)
Q Consensus       156 ~~~~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~-g~~vn~~d~~g~TpLh~A~~  234 (290)
                      ....+..++...++.+.-.|.+.+..+-..++       +||.|+..|+++++++||+. +.+++.+|.+|+|||.-|..
T Consensus       510 ~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RT-------aLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~  582 (622)
T KOG0506|consen  510 VMYAAKNGDLSALRRFALQGMDLETKDYDDRT-------ALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKH  582 (622)
T ss_pred             hhhhhhcCCHHHHHHHHHhcccccccccccch-------hheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHh
Confidence            33447788888888899999999888776665       89999999999999999986 89999999999999999999


Q ss_pred             cCCHHHHHHHHHCCC
Q 022927          235 FNRTDIAFILMESGA  249 (290)
Q Consensus       235 ~g~~~iv~~Ll~~Ga  249 (290)
                      ++|.+++++|-++-.
T Consensus       583 F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  583 FKHKEVVKLLEEAQY  597 (622)
T ss_pred             cCcHHHHHHHHHHhc
Confidence            999999999987643

>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]

Probab=98.29  E-value=2.6e-07  Score=85.23  Aligned_cols=60  Identities=20%  Similarity=0.276  Sum_probs=52.2

Q ss_pred             ccccccCCCCC-ccccccccccccceecCCCCCCcccccCCCCCCcccccccchhhhcccCC
Q 022927            6 LQNLRLISHIR-SNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTGK   66 (290)
Q Consensus         6 ~~~~~c~~~f~-~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~~~   66 (290)
                      ..|+.|+.+|+ ..+|||||+.||.|+|+.|+..+..+...+ ...-|||..||.....+..
T Consensus       416 ~~c~~c~e~~~s~t~~R~~~k~~~~vlc~~cs~~~~~l~~~~-s~ssrv~~~~~~~~~~a~~  476 (623)
T KOG4424|consen  416 TSCDSCEETFNSITFRRHRCKAKGAVLCDKCSDFMAKLSYDN-SRSSRVCMDRYLTPSGAPG  476 (623)
T ss_pred             ccchhhcCchhhHHHhhhhhhhccceeeccccchhhhhcccc-cchhhhhhhhccCCCCCCC
Confidence            46999999998 899999999999999999999998876544 6889999999998865543

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.29  E-value=4.6e-07  Score=88.88  Aligned_cols=96  Identities=18%  Similarity=0.160  Sum_probs=79.0

Q ss_pred             cchHHHHHHHcCCHHHHHHHHHC-CCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCC
Q 022927          192 NGEGLRDAIKNGDAAAVKKLLSE-GVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQ  270 (290)
Q Consensus       192 ~~t~Lh~A~~~g~~~~v~~Ll~~-g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~  270 (290)
                      +.+.||.++..+..-+++.+++. |......|.+|...+|+++..|..-.+.+.+-.|..++++|..||||||||+..|+
T Consensus       574 ~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~  653 (975)
T KOG0520|consen  574 DMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGR  653 (975)
T ss_pred             chHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccchHhhcCH
Confidence            56679999999999999999986 76677778888888998555444434444456799999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCC
Q 022927          271 YKMRQKMEEDKNNVGST  287 (290)
Q Consensus       271 ~~iv~~Ll~~GAdin~~  287 (290)
                      ..++..|++.|++.++.
T Consensus       654 e~l~a~l~~lga~~~~~  670 (975)
T KOG0520|consen  654 EKLVASLIELGADPGAV  670 (975)
T ss_pred             HHHHHHHHHhccccccc
Confidence            99999999999987654

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.25  E-value=1.5e-06  Score=76.59  Aligned_cols=58  Identities=21%  Similarity=0.163  Sum_probs=55.2

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCC
Q 022927          226 MSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNN  283 (290)
Q Consensus       226 ~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd  283 (290)
                      +--|..|++.|..+.+++|++.|.+||.+|.....||.+|...||.++|++||++||-
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAi   94 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI   94 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence            4568889999999999999999999999999999999999999999999999999994

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.15  E-value=3.3e-06  Score=81.46  Aligned_cols=87  Identities=16%  Similarity=0.089  Sum_probs=63.4

Q ss_pred             chHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCC----------CCCCCCCCChh
Q 022927          193 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANM----------DCKNAQGESPL  262 (290)
Q Consensus       193 ~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~i----------n~~d~~G~TpL  262 (290)
                      +++|+.|+.+.+.+++++|+++...+       ..+|.+|+..|..+++++|+.+-...          ...-.-+.|||
T Consensus        63 r~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPl  135 (822)
T KOG3609|consen   63 RLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPL  135 (822)
T ss_pred             hhceecccccccHHHHHHHhcCcccc-------chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHH
Confidence            33677777777777777777765444       34677777777777777777653222          11224578999


Q ss_pred             hhhhccCCHHHHHHHHhCCCCCCC
Q 022927          263 DCAPVTLQYKMRQKMEEDKNNVGS  286 (290)
Q Consensus       263 ~~A~~~g~~~iv~~Ll~~GAdin~  286 (290)
                      .+|+..+++||+++||++|+.+..
T Consensus       136 iLAAh~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen  136 MLAAHLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             HHHHHhcchHHHHHHHHcCCCCCC
Confidence            999999999999999999998864

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.10  E-value=6.6e-06  Score=75.45  Aligned_cols=67  Identities=25%  Similarity=0.288  Sum_probs=57.3

Q ss_pred             CCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHC
Q 022927          174 PGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMES  247 (290)
Q Consensus       174 ~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~  247 (290)
                      .+..++..+..+.       ||||.|+..|+.+.++.|+.+|+++..++..||++||-|+..|+.+++..+|.+
T Consensus        44 ~~~~id~~D~~g~-------TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   44 VSLVIDRRDPPGR-------TPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEVLRH  110 (560)
T ss_pred             hhceeccccCCCC-------ccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHHHHHHHHH
Confidence            3445555555554       499999999999999999999999999999999999999999999988777654

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.10  E-value=2.4e-06  Score=84.01  Aligned_cols=77  Identities=19%  Similarity=0.279  Sum_probs=68.5

Q ss_pred             HCCCCCcccc--cCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          213 SEGVDANFCD--KQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       213 ~~g~~vn~~d--~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      ..++++|..+  ..|.|+||.|+..+..-+.++|+++|+++|.+|..|+||||.+...|+...+.+|+++||+.++.++
T Consensus       642 ~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~  720 (785)
T KOG0521|consen  642 AHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDP  720 (785)
T ss_pred             cchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCc
Confidence            3455555432  4679999999999999999999999999999999999999999999999999999999999998764

>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]

Probab=98.06  E-value=3.6e-07  Score=84.86  Aligned_cols=55  Identities=22%  Similarity=0.411  Sum_probs=49.5

Q ss_pred             ccc-cCCCCCccccccccccccceecCCCCCCcccccCCCCCCcccccccchhhhc
Q 022927            8 NLR-LISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSS   62 (290)
Q Consensus         8 ~~~-c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~   62 (290)
                      ||. |+..|..|+||||||.||...|..|..++......|...+.++|+.|+.+..
T Consensus       329 ~~a~~R~~~kd~~Rk~~~~g~Ga~e~aa~ea~kgiqEd~gse~~Adg~Dq~psvsi  384 (1141)
T KOG1811|consen  329 CMACCREHFKDFNRKHHCRGCGALECAACEAKKGIQEDCGSENPADGCDQCPSVSI  384 (1141)
T ss_pred             HHHHHHHHHHHHHHhhhccccchHHHhHHHHhhhhhhcccccCcccccccccchhh
Confidence            454 6889999999999999999999999999988888898999999999997653

>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]

Probab=98.03  E-value=6.1e-06  Score=83.72  Aligned_cols=53  Identities=28%  Similarity=0.560  Sum_probs=43.8

Q ss_pred             CCcccccccccCCCCCccccccccccccceecCCCCCCcccccCCCCCCcccccccchhhhccc
Q 022927            1 MTHHDLQNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRT   64 (290)
Q Consensus         1 ~~~~~~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~   64 (290)
                      |+.-|..|..|+   |.++||||||.||++||++|...       . .+.+|||..|+......
T Consensus         1 ~~~s~~~~~~~~---t~~~~~~~~~~~g~~~~~~~~~~-------~-~~~i~~~~~~~~~~~~~   53 (1598)
T KOG0230|consen    1 MPQSSNVCYDCD---TSVNRRHHCRVCGRVFCSKCQDS-------P-ETSIRVCNECRGQWEQG   53 (1598)
T ss_pred             CCccccchhccc---cccccCCCCcccCceeccccCCC-------C-ccceeehhhhhhhcccc
Confidence            556677889999   99999999999999999999822       2 34899999999887533

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.93  E-value=4.8e-05  Score=61.20  Aligned_cols=69  Identities=20%  Similarity=0.144  Sum_probs=59.7

Q ss_pred             CCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCC-CCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCC
Q 022927          176 QVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEG-VDANFCDKQGMSLLHLAALFNRTDIAFILMESGANM  251 (290)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g-~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~i  251 (290)
                      .++|..|..+       ||+|+.|+..|..+.+.+|+.+| +++...|..|.+++.+|-..|..+++..|.++-.+-
T Consensus         3 ~~in~rD~fg-------WTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~et   72 (223)
T KOG2384|consen    3 GNINARDAFG-------WTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRET   72 (223)
T ss_pred             CCccchhhhc-------chHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccC
Confidence            4455555554       45999999999999999999999 899999999999999999999999999999874433

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.75  E-value=1.4e-05  Score=78.64  Aligned_cols=85  Identities=20%  Similarity=0.215  Sum_probs=68.6

Q ss_pred             HHHHHHHcCCHHHHHHHH-HCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC------CCCCCCChhhhhhc
Q 022927          195 GLRDAIKNGDAAAVKKLL-SEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDC------KNAQGESPLDCAPV  267 (290)
Q Consensus       195 ~Lh~A~~~g~~~~v~~Ll-~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~------~d~~G~TpL~~A~~  267 (290)
                      .+|. |..++++.+-+|+ -.|..++.+|..||||||||+.+|+..++..|++.|++..+      .+-.|.|+-.+|..
T Consensus       611 V~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s  689 (975)
T KOG0520|consen  611 VIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARA  689 (975)
T ss_pred             hhhH-hhhcCCceeEEEEeecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhc
Confidence            5677 5556666555444 56899999999999999999999999999999988776543      34569999999999


Q ss_pred             cCCHHHHHHHHhC
Q 022927          268 TLQYKMRQKMEED  280 (290)
Q Consensus       268 ~g~~~iv~~Ll~~  280 (290)
                      .|+..+..+|-+.
T Consensus       690 ~g~~gia~~lse~  702 (975)
T KOG0520|consen  690 NGHKGIAGYLSEK  702 (975)
T ss_pred             ccccchHHHHhhh
Confidence            9999988887653

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.51  E-value=0.00023  Score=65.13  Aligned_cols=62  Identities=21%  Similarity=0.323  Sum_probs=54.8

Q ss_pred             HHHHHHHHHCCCCCccc------ccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhh
Q 022927          205 AAAVKKLLSEGVDANFC------DKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAP  266 (290)
Q Consensus       205 ~~~v~~Ll~~g~~vn~~------d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~  266 (290)
                      ...+++|.+++++.|..      +..--|+||+|+.+|...++.+||+.|+|+.++|..|.||..++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            56788999998887653      344679999999999999999999999999999999999999987

>smart00248 ANK ankyrin repeats

Probab=97.46  E-value=0.00018  Score=38.79  Aligned_cols=27  Identities=33%  Similarity=0.557  Sum_probs=13.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCC
Q 022927          225 GMSLLHLAALFNRTDIAFILMESGANM  251 (290)
Q Consensus       225 g~TpLh~A~~~g~~~iv~~Ll~~Ga~i  251 (290)
                      |.|+||+|+..++.+++++|+++|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            344555555555555555555444433

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=97.37  E-value=0.0004  Score=37.30  Aligned_cols=28  Identities=14%  Similarity=0.291  Sum_probs=20.0

Q ss_pred             CCChhhhhhccCCHHHHHHHHhCCCCCC
Q 022927          258 GESPLDCAPVTLQYKMRQKMEEDKNNVG  285 (290)
Q Consensus       258 G~TpL~~A~~~g~~~iv~~Ll~~GAdin  285 (290)
                      |.||||+|+..++.+++++|+++|.+++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            5677777777777777777777776654

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]

Probab=97.19  E-value=0.00017  Score=73.63  Aligned_cols=29  Identities=21%  Similarity=0.532  Sum_probs=27.8

Q ss_pred             cccccccCCCCCccccccccccccceecCCC
Q 022927            5 DLQNLRLISHIRSNLLQHHCRCCGRTLCHEH   35 (290)
Q Consensus         5 ~~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c   35 (290)
                      .++|+.|..+|..|+|+|||  ||+|||.+|
T Consensus        97 ~~ec~~~~~~~~t~Rr~~~~--~gqi~~ss~  125 (1598)
T KOG0230|consen   97 SKECYDCEQKFETFRRKHHC--CGQIFCSSC  125 (1598)
T ss_pred             cchhhhhccchhhhhccccc--CccccCCcc
Confidence            47899999999999999999  999999999

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.07  E-value=0.00057  Score=66.40  Aligned_cols=82  Identities=21%  Similarity=0.175  Sum_probs=72.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHCC----CCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCC
Q 022927          195 GLRDAIKNGDAAAVKKLLSEG----VDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQ  270 (290)
Q Consensus       195 ~Lh~A~~~g~~~~v~~Ll~~g----~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~  270 (290)
                      ....|+..|+...|+..++..    .++|..|.-|+++|++|+.+.+.+++++|++++..+       ..+|.+|+..|.
T Consensus        28 ~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~~  100 (822)
T KOG3609|consen   28 GFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVGS  100 (822)
T ss_pred             HHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHHHH
Confidence            588999999999999998752    678999999999999999999999999999997766       348999999999


Q ss_pred             HHHHHHHHhCCCC
Q 022927          271 YKMRQKMEEDKNN  283 (290)
Q Consensus       271 ~~iv~~Ll~~GAd  283 (290)
                      .++|++|+.+-..
T Consensus       101 v~~VE~ll~~~~~  113 (822)
T KOG3609|consen  101 VPLVELLLVHFVD  113 (822)
T ss_pred             HHHHHHHHhcccc
Confidence            9999999997543

>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A

Probab=96.80  E-value=0.00053  Score=52.06  Aligned_cols=50  Identities=12%  Similarity=0.199  Sum_probs=39.4

Q ss_pred             cccccccCCCCCcc-ccccccccccceecCCCCCCcccccCCCCCCcccccccchhhh
Q 022927            5 DLQNLRLISHIRSN-LLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSS   61 (290)
Q Consensus         5 ~~~~~~c~~~f~~~-~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~   61 (290)
                      ...|..|+.+|+++ ++.+-|..|+.-||..|...       ....+.-+|..|+...
T Consensus        54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-------~~~~~~WlC~vC~k~r  104 (118)
T PF02318_consen   54 ERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-------SKKEPIWLCKVCQKQR  104 (118)
T ss_dssp             CSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-------TSSSCCEEEHHHHHHH
T ss_pred             CcchhhhCCcccccCCCCCcCCcCCccccCccCCc-------CCCCCCEEChhhHHHH
Confidence            45789999999955 68999999999999999765       2246788999999754

The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.40  E-value=0.0035  Score=57.63  Aligned_cols=76  Identities=21%  Similarity=0.195  Sum_probs=54.2

Q ss_pred             cccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHH
Q 022927          166 SNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILM  245 (290)
Q Consensus       166 ~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll  245 (290)
                      ..+++|.+.+...|..-... ..+...-|+||+|+..|..++|.+||+.|+|+-.+|..|.||..++.   +.++-..++
T Consensus       405 ~~ie~lken~lsgnf~~~pe-~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~---nkdVk~~F~  480 (591)
T KOG2505|consen  405 DSIEALKENLLSGNFDVTPE-ANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA---NKDVKSIFI  480 (591)
T ss_pred             hHHHHHHhcCCccccccccc-ccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc---cHHHHHHHH
Confidence            44455556665554433222 12223457999999999999999999999999999999999999986   444444333

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.38  E-value=0.011  Score=49.16  Aligned_cols=90  Identities=14%  Similarity=0.054  Sum_probs=64.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCCccccc----CCCcHHHHHHH--cCCHHHHHHHHHCC-CCCCCC---CCCCCChhh
Q 022927          194 EGLRDAIKNGDAAAVKKLLSEGVDANFCDK----QGMSLLHLAAL--FNRTDIAFILMESG-ANMDCK---NAQGESPLD  263 (290)
Q Consensus       194 t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~----~g~TpLh~A~~--~g~~~iv~~Ll~~G-a~in~~---d~~G~TpL~  263 (290)
                      ++|.+|+.++..+++.+||.+- .....|.    .+.--+-|+..  ..+..+++++|.+| +++|.+   -+.|.|-|.
T Consensus       181 ~Am~~si~~~K~dva~~lls~f-~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLD  259 (284)
T PF06128_consen  181 QAMWLSIGNAKEDVALYLLSKF-NFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLD  259 (284)
T ss_pred             HHHHHHhcccHHHHHHHHHhhc-ceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchHHH
Confidence            3678888888888888888641 2222221    12223333332  34567899999998 677754   567999999


Q ss_pred             hhhccCCHHHHHHHHhCCCCC
Q 022927          264 CAPVTLQYKMRQKMEEDKNNV  284 (290)
Q Consensus       264 ~A~~~g~~~iv~~Ll~~GAdi  284 (290)
                      -|...++.+|+.+||++||-.
T Consensus       260 NA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  260 NAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             hHHhcCcHHHHHHHHHcCccc
Confidence            999999999999999999943

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair

Probab=95.00  E-value=0.0034  Score=39.70  Aligned_cols=29  Identities=10%  Similarity=0.240  Sum_probs=19.5

Q ss_pred             cccccCCCCCcc------ccccccccccceecCCC
Q 022927            7 QNLRLISHIRSN------LLQHHCRCCGRTLCHEH   35 (290)
Q Consensus         7 ~~~~c~~~f~~~------~rrhhCr~cg~v~C~~c   35 (290)
                      .|++|+++|...      ..|+.|..|+++||..|
T Consensus         1 ~CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC   35 (51)
T PF07975_consen    1 YCFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC   35 (51)
T ss_dssp             EETTTTEE-TTS-------EEE--TTTT--B-HHH
T ss_pred             CCccCCCCCCCcccccccCCeEECCCCCCccccCc
Confidence            489999999976      36899999999999988

It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.

>KOG1729 consensus FYVE finger containing protein [General function prediction only]

Probab=92.50  E-value=0.032  Score=48.77  Aligned_cols=56  Identities=14%  Similarity=0.113  Sum_probs=41.6

Q ss_pred             cccccccCCCCCccccccccccccceecCCCCC-CcccccCC-----CCCCcccccccchhh
Q 022927            5 DLQNLRLISHIRSNLLQHHCRCCGRTLCHEHSS-DQMTLPQF-----GIHTNVRVCADCFNS   60 (290)
Q Consensus         5 ~~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~-~~~~~~~~-----~~~~~~rvC~~C~~~   60 (290)
                      .-.|+.|...|.++.|+||||.||+|||..|.. +....+..     -.....+.|..|+..
T Consensus        20 ~~s~~~~~~e~~~~~r~~~~~~~grv~~~q~~~~k~~rk~~q~r~~~l~~D~~~~~~~~~~~   81 (288)
T KOG1729|consen   20 ANSCRNCKVEFCFGRRGHPCRECGRVLCRQGTLVKRCRKKLQSRSFFLFNDILVYGNIVSDN   81 (288)
T ss_pred             chhhhhhcccchhhhccCcccccchhhhhhhhhHHHHhcccccccccccccchhhcccccCH
Confidence            345788899999999999999999999999998 22222211     124566788888765

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=92.31  E-value=0.27  Score=33.95  Aligned_cols=46  Identities=24%  Similarity=0.245  Sum_probs=39.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHC
Q 022927          195 GLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMES  247 (290)
Q Consensus       195 ~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~  247 (290)
                      -|..|+..|+.++++.+++.+ .++      ...+..|+...+.+++++|++.
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            589999999999999999765 222      3578999999999999999986

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=90.83  E-value=0.28  Score=33.86  Aligned_cols=47  Identities=17%  Similarity=0.156  Sum_probs=39.7

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhC
Q 022927          227 SLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEED  280 (290)
Q Consensus       227 TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  280 (290)
                      .-|.+|+..|+.+|++.+++.+ .++      ...|..|+..-+-+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            4678999999999999999765 222      4579999999999999999875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>TIGR00622 ssl1 transcription factor ssl1

Probab=90.35  E-value=0.2  Score=37.27  Aligned_cols=30  Identities=10%  Similarity=0.225  Sum_probs=25.4

Q ss_pred             cccccCCCCCcc----------ccccccccccceecCCCC
Q 022927            7 QNLRLISHIRSN----------LLQHHCRCCGRTLCHEHS   36 (290)
Q Consensus         7 ~~~~c~~~f~~~----------~rrhhCr~cg~v~C~~c~   36 (290)
                      .|++|+.+|.-.          .-|..|..|.++||.+|=
T Consensus        57 ~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD   96 (112)
T TIGR00622        57 FCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCD   96 (112)
T ss_pred             cccCcCCCCCCcccccccccccccceeCCCCCCccccccc
Confidence            499999999743          347889999999999994

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=90.27  E-value=0.61  Score=39.15  Aligned_cols=49  Identities=20%  Similarity=0.319  Sum_probs=41.2

Q ss_pred             CCHHHHHHHHHCC-CCCccc---ccCCCcHHHHHHHcCCHHHHHHHHHCCCCC
Q 022927          203 GDAAAVKKLLSEG-VDANFC---DKQGMSLLHLAALFNRTDIAFILMESGANM  251 (290)
Q Consensus       203 g~~~~v~~Ll~~g-~~vn~~---d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~i  251 (290)
                      .+..+++.+|.+| +++|..   -..|.|-|--|+.+++.+++.+||++||-.
T Consensus       228 a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  228 ASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             CcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence            4667889999988 567653   467999999999999999999999999944

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms]

Probab=89.90  E-value=0.46  Score=48.29  Aligned_cols=45  Identities=16%  Similarity=0.109  Sum_probs=36.7

Q ss_pred             ccccccCCCCCccccccccccccceecCCCCCCcccccCCCCCCcccccccchhhhcc
Q 022927            6 LQNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSR   63 (290)
Q Consensus         6 ~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~   63 (290)
                      ..|+.|.+.|++++||||||  |.+|          +-+.+ .+..|+|..|+..+..
T Consensus       658 Png~la~t~~~~~~e~~hsr--~~ls----------~~~~s-~~~~~~~n~t~s~~rn  702 (1287)
T KOG1841|consen  658 PNGELAETRFTFTGERHHSR--GKLS----------LLYSS-RKEARPCNITHSVLRN  702 (1287)
T ss_pred             CCceecccceeeeccccccc--cccc----------ccccc-cccCCCCcccCccchh
Confidence            45899999999999999999  8887          22333 6788999999987765

>smart00154 ZnF_AN1 AN1-like Zinc finger

Probab=86.12  E-value=0.51  Score=28.08  Aligned_cols=26  Identities=27%  Similarity=0.560  Sum_probs=18.8

Q ss_pred             ccccCCCCCccccccccccccceecCCC
Q 022927            8 NLRLISHIRSNLLQHHCRCCGRTLCHEH   35 (290)
Q Consensus         8 ~~~c~~~f~~~~rrhhCr~cg~v~C~~c   35 (290)
                      |..|++.-.++  ...|+.||.+||...
T Consensus         1 C~~C~~~~~l~--~f~C~~C~~~FC~~H   26 (39)
T smart00154        1 CHFCRKKVGLT--GFKCRHCGNLFCGEH   26 (39)
T ss_pred             CcccCCccccc--CeECCccCCcccccc
Confidence            34566655554  678999999999865

Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=85.91  E-value=1.7  Score=35.38  Aligned_cols=79  Identities=18%  Similarity=0.027  Sum_probs=54.5

Q ss_pred             HHHHHHHcCCHHHH----HHHHHCCCCCccccc--CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhcc
Q 022927          195 GLRDAIKNGDAAAV----KKLLSEGVDANFCDK--QGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVT  268 (290)
Q Consensus       195 ~Lh~A~~~g~~~~v----~~Ll~~g~~vn~~d~--~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~  268 (290)
                      -+-.|....++++.    ++++++...-...|.  --..-|.+|+..|-...+.-.|++|.+++.      ++|..|+..
T Consensus       107 iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~y  180 (192)
T PF03158_consen  107 IFDIAFAKKDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKY  180 (192)
T ss_pred             hhhhhhhccchhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHh
Confidence            36677777777643    344555333211111  112456789999999998888899988873      789999999


Q ss_pred             CCHHHHHHHHh
Q 022927          269 LQYKMRQKMEE  279 (290)
Q Consensus       269 g~~~iv~~Ll~  279 (290)
                      ++..|+.+++.
T Consensus       181 nhRkIL~yfi~  191 (192)
T PF03158_consen  181 NHRKILDYFIR  191 (192)
T ss_pred             hHHHHHHHhhc
Confidence            99999988874

These proteins may be involved in promoting survival of infected macrophages [].

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=85.50  E-value=0.45  Score=37.71  Aligned_cols=15  Identities=20%  Similarity=0.640  Sum_probs=9.6

Q ss_pred             cccccccccccccee
Q 022927           17 SNLLQHHCRCCGRTL   31 (290)
Q Consensus        17 ~~~rrhhCr~cg~v~   31 (290)
                      ..+|+++|.+||+-|
T Consensus        24 ~~~~~~~c~~c~~~f   38 (154)
T PRK00464         24 AIRRRRECLACGKRF   38 (154)
T ss_pred             ceeeeeeccccCCcc
Confidence            355667777777544

>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=84.60  E-value=0.3  Score=30.19  Aligned_cols=33  Identities=21%  Similarity=0.326  Sum_probs=20.8

Q ss_pred             CcccccccccCCCCCccccccccccccce-ecCCC
Q 022927            2 THHDLQNLRLISHIRSNLLQHHCRCCGRT-LCHEH   35 (290)
Q Consensus         2 ~~~~~~~~~c~~~f~~~~rrhhCr~cg~v-~C~~c   35 (290)
                      +|+...|-+|+.. .+...|+||..|... +|..|
T Consensus         1 ~h~~~~C~~C~~~-~i~g~Ry~C~~C~d~dLC~~C   34 (46)
T PF00569_consen    1 IHHGYTCDGCGTD-PIIGVRYHCLVCPDYDLCEDC   34 (46)
T ss_dssp             -CSSCE-SSS-SS-SEESSEEEESSSSS-EEEHHH
T ss_pred             CCCCeECcCCCCC-cCcCCeEECCCCCCCchhhHH
Confidence            5788889999985 455678999988532 44433

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.

>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein

Probab=84.09  E-value=0.52  Score=28.83  Aligned_cols=31  Identities=23%  Similarity=0.337  Sum_probs=22.2

Q ss_pred             cccccccccCCCCCccccccccccccce-ecCCC
Q 022927            3 HHDLQNLRLISHIRSNLLQHHCRCCGRT-LCHEH   35 (290)
Q Consensus         3 ~~~~~~~~c~~~f~~~~rrhhCr~cg~v-~C~~c   35 (290)
                      |+...|..|+.  .+...|+||..|... +|..|
T Consensus         2 ~~~~~C~~C~~--~i~g~ry~C~~C~d~dlC~~C   33 (44)
T smart00291        2 HHSYSCDTCGK--PIVGVRYHCLVCPDYDLCQSC   33 (44)
T ss_pred             CCCcCCCCCCC--CCcCCEEECCCCCCccchHHH
Confidence            56778999998  456778899988433 55555

Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].

>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.96  E-value=0.06  Score=48.48  Aligned_cols=60  Identities=13%  Similarity=0.133  Sum_probs=49.3

Q ss_pred             ccccccCCCCCcccccccccc--ccceecCCCCCCcccccCCCCCCcccccccchhhhcccCCC
Q 022927            6 LQNLRLISHIRSNLLQHHCRC--CGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTGKD   67 (290)
Q Consensus         6 ~~~~~c~~~f~~~~rrhhCr~--cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~~~~   67 (290)
                      .+|-.|...|.-++-.-||-.  |++|||-.|+.-.  +|..-...+..||+-|+....+....
T Consensus       469 e~c~~~~aS~~slk~e~erl~qq~eqi~~~~~~Kat--vp~l~~e~~akv~rlq~eL~~seq~~  530 (542)
T KOG0993|consen  469 EQCSNCDASFASLKVEPERLHQQCEQIFCMNCLKAT--VPSLPNERPAKVCRLQHELLNSEQKP  530 (542)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhHHHhh--cccccccchHHHHHHHHHHhhhccCC
Confidence            368889999999998888887  9999999998654  46655578999999999988765544

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=82.42  E-value=0.76  Score=34.15  Aligned_cols=27  Identities=11%  Similarity=0.004  Sum_probs=16.9

Q ss_pred             cccccCCCCCccc-cccccccccceecC
Q 022927            7 QNLRLISHIRSNL-LQHHCRCCGRTLCH   33 (290)
Q Consensus         7 ~~~~c~~~f~~~~-rrhhCr~cg~v~C~   33 (290)
                      .|..|+++|==++ +--+|-.||.+|=.
T Consensus        11 ~Cp~CG~kFYDLnk~PivCP~CG~~~~~   38 (108)
T PF09538_consen   11 TCPSCGAKFYDLNKDPIVCPKCGTEFPP   38 (108)
T ss_pred             cCCCCcchhccCCCCCccCCCCCCccCc
Confidence            4788988887444 44446666655433

The function of members of this family is unknown.

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=81.21  E-value=0.95  Score=34.31  Aligned_cols=24  Identities=13%  Similarity=-0.136  Sum_probs=14.8

Q ss_pred             cccccCCCCC-ccccccccccccce
Q 022927            7 QNLRLISHIR-SNLLQHHCRCCGRT   30 (290)
Q Consensus         7 ~~~~c~~~f~-~~~rrhhCr~cg~v   30 (290)
                      .|..|+++|- |.++--+|-.||.+
T Consensus        11 ~Cp~cg~kFYDLnk~p~vcP~cg~~   35 (129)
T TIGR02300        11 ICPNTGSKFYDLNRRPAVSPYTGEQ   35 (129)
T ss_pred             cCCCcCccccccCCCCccCCCcCCc
Confidence            4778888886 44445555555544

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	290
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		2e-07
1vfy_A	73	Phosphatidylinositol-3-Phosphate Binding Fyve Domai		3e-07
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		3e-07
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		4e-07
3zyq_A	226	Crystal Structure Of The Tandem Vhs And Fyve Domain		7e-07
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		8e-07
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-06
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		2e-06
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		2e-06
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		3e-06
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-06
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-06
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		8e-06
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		8e-06
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		8e-06
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		9e-06
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		9e-06
1dvp_A	220	Crystal Structure Of The Vhs And Fyve Tandem Domain		9e-06
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		9e-06
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		1e-05
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		1e-05
2xee_A	157	Structural Determinants For Improved Thermal Stabil		1e-05
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		1e-05
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		3e-05
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		3e-05
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		3e-05
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		3e-05
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		3e-05
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		4e-05
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		4e-05
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		4e-05
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		6e-05
2xen_A	91	Structural Determinants For Improved Thermal Stabil		6e-05
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		7e-05
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		7e-05
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		7e-05
1uoh_A	226	Human Gankyrin Length = 226		8e-05
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		1e-04
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		1e-04
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		1e-04
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		1e-04
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		2e-04
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		2e-04
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		2e-04
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		2e-04
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		3e-04
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		4e-04
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		6e-04
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		7e-04
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		8e-04

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 40/66 (60%)
Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L +A KNG A  VKKLLS+G D N   K G + LHLAA     +I  +L+  GA+++ ++
Sbjct: 13  LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARS 72
Query: 256 AQGESP 261
             G +P
Sbjct: 73  KDGNTP 78

>pdb|1VFY|A Chain A, Phosphatidylinositol-3-Phosphate Binding Fyve Domain Of Vps27p Protein From Saccharomyces Cerevisiae Length = 73

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/38 (55%), Positives = 25/38 (65%)
Query: 21 QHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCF 58
          +HHCR CG   C EHSS+ + LP  GI+  VRVC  CF
Sbjct: 27 KHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVCDSCF 64

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 39/67 (58%)
Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A +NG    VK LL  G D N  DK G + LHLAA     ++  +L+E+GA+++ K+  G
Sbjct: 9   AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68
Query: 259 ESPLDCA 265
            +PL  A
Sbjct: 69  RTPLHLA 75

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 40/70 (57%)
Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L  A +NG    VK LL  G D N  DK G + LHLAA     ++  +L+E+GA+++ K+
Sbjct: 6   LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Query: 256 AQGESPLDCA 265
             G +PL  A
Sbjct: 66  KNGRTPLHLA 75

>pdb|3ZYQ|A Chain A, Crystal Structure Of The Tandem Vhs And Fyve Domains Of Hepatocyte Growth Factor-Regulated Tyrosine Kinase Substrate (Hgs-Hrs) At 1.48 A Resolution Length = 226

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 21  QHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTGK 66
           +HHCR CG+  C + SS   T+P+FGI   VRVC  C+   +R  +
Sbjct: 180 KHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLNRKAE 225

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 42/67 (62%)
Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A+KN      +KLLS+G + N  D  G + L  + +F  +++++ L+E GAN++ +N +G
Sbjct: 75  AVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEG 134
Query: 259 ESPLDCA 265
           E+PL  A
Sbjct: 135 ETPLIVA 141

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 193 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 252
           G+ L +A +NG+   VK LL  G D N  D  G + LHLAA     ++  +L+  GA+ +
Sbjct: 5   GKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 64
Query: 253 CKNAQGESPLDCA 265
            K++ G++PL  A
Sbjct: 65  AKDSDGKTPLHLA 77

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 48/85 (56%)
Query: 193 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 252
           G+ L +A + G    V+ L++ G D N  D  G++ LHLAA+    +I  +L++ GA++D
Sbjct: 15  GKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVD 74
Query: 253 CKNAQGESPLDCAPVTLQYKMRQKM 277
             +  G +PL  A +T   ++ + +
Sbjct: 75  AADVYGFTPLHLAAMTGHLEIVEVL 99

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 39/66 (59%)
Query: 202 NGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESP 261
           NG    V+ LL  G D N  D  GM+ L LAALF   +I  +L+++GA+++  + +G +P
Sbjct: 57  NGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTP 116
Query: 262 LDCAPV 267
           L  A +
Sbjct: 117 LHLAAM 122

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 193 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 252
           G+ L +A + G    V+ L++ G D N  DK G++ LHLAA+ +  +I  +L+++GA+++
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVN 74
Query: 253 CKNAQGESPL 262
             +A GE+PL
Sbjct: 75  AIDAIGETPL 84

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 193 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 252
           G+ L +A +NG+   VK L+  G D N  D  G + LH AA     +I  +L+  GA+++
Sbjct: 5   GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 64
Query: 253 CKNAQGESPLDCA 265
            K++ G +PL  A
Sbjct: 65  AKDSDGRTPLHYA 77

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 193 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 252
           G+ L +A +NG+   VK LL  G D N  D  G + LH AA     +I  +L+  GA+ +
Sbjct: 5   GKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 64
Query: 253 CKNAQGESPLDCA 265
            K++ G +PL  A
Sbjct: 65  AKDSDGRTPLHYA 77

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 44/74 (59%)
Query: 193 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 252
           G+ L +A + G    V+ L++ G D N  D  G + LHLAA F   +I  +L+++GA+++
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVN 74
Query: 253 CKNAQGESPLDCAP 266
            K++ G +PL  A 
Sbjct: 75  AKDSLGVTPLHLAA 88

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 193 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 252
           G+ L +A + G    V+ L++ G D N  D QG + LHLAA     +I  +L++ GA+++
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVN 74
Query: 253 CKNAQGESPLDCA 265
            ++  G +PL  A
Sbjct: 75  ARDTDGWTPLHLA 87

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 43/74 (58%)
Query: 193 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 252
           G+ L +A + G    V+ L++ G D N  D  G + LHLAA F   +I  +L+++GA+++
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVN 74
Query: 253 CKNAQGESPLDCAP 266
             ++ G +PL  A 
Sbjct: 75  ADDSLGVTPLHLAA 88

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 43/76 (56%)
Query: 193 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 252
           G+ L +A + G    V+ L++ G D N  D  G++ LHLAA +   +I  +L++ GA+++
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN 74
Query: 253 CKNAQGESPLDCAPVT 268
             +  G +PL  A + 
Sbjct: 75  AIDIMGSTPLHLAALI 90

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 193 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 252
           G+ L +A + G    V+ L++ G D N  DK G + LHLAA     +I  +L+++GA+++
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 253 CKNAQGESPLDCA 265
            K+  G +PL  A
Sbjct: 63  AKDKDGYTPLHLA 75

>pdb|1DVP|A Chain A, Crystal Structure Of The Vhs And Fyve Tandem Domains Of Hrs, A Protein Involved In Membrane Trafficking And Signal Transduction Length = 220

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 21  QHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSR 63
           +HHCR CG+  C + ++ Q  LP++GI   VRVC  CF +  R
Sbjct: 177 KHHCRNCGQVFCGQCTAKQCPLPKYGIEKEVRVCDGCFAALQR 219

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L  A +NG    VK L+S+G D N  D  G + LH AA     ++  +L+  GA+++  +
Sbjct: 74  LHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSD 133
Query: 256 AQGESPLDCA 265
           + G +PLD A
Sbjct: 134 SDGRTPLDLA 143

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 47/85 (55%)
Query: 193 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 252
           G+ L +A + G    V+ L++ G D N  D  G++ LHLAA +   +I  +L++ GA+++
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN 74
Query: 253 CKNAQGESPLDCAPVTLQYKMRQKM 277
             +  G +PL  A +    ++ + +
Sbjct: 75  AIDIXGSTPLHLAALIGHLEIVEVL 99

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 54/97 (55%)
Query: 193 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 252
           G+ L +A + G    V+ L++ G D N  D  G + LHLAA+    +I  +L++ GA+++
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVN 74
Query: 253 CKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS 289
             +  G++PL  A +    ++ + + ++  +V +T +
Sbjct: 75  AADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDT 111

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 193 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 252
           G+ L +A + G    V+ L++ G D N  DK G + LHLAA     +I  +L+++GA+++
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 253 CKNAQGESPLDCA 265
            K+  G +PL  A
Sbjct: 63  AKDKDGYTPLHLA 75

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 193 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 252
           G+ L +A + G    V+ L++ G D N  DK G + LHLAA     +I  +L+++GA+++
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 74
Query: 253 CKNAQGESPLDCA 265
            K+  G +PL  A
Sbjct: 75  AKDKDGYTPLHLA 87

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 45/75 (60%)
Query: 193 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 252
           G+ L +A + G    V+ L++ G D N  D++G + LHLAA ++  +I  +L++ GA+++
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVN 74
Query: 253 CKNAQGESPLDCAPV 267
             +  G +PL  A +
Sbjct: 75  AHDNDGSTPLHLAAL 89

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 39/76 (51%)
Query: 190 EVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGA 249
           ++N   L  A + G  + V +L+  G D +  D +G S +HLAA F  T I   L+  G 
Sbjct: 74  DLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQ 133
Query: 250 NMDCKNAQGESPLDCA 265
           ++D  +  G +PL  A
Sbjct: 134 DVDMMDQNGMTPLMWA 149

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 42/74 (56%)
Query: 193 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 252
           G+ L +A + G    V+ L++ G D N  D  G + LHLAA +   +I  +L+++GA+++
Sbjct: 15  GKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVN 74
Query: 253 CKNAQGESPLDCAP 266
             +  G +PL  A 
Sbjct: 75  AYDTLGSTPLHLAA 88

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 44/82 (53%)
Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L  A  NG    V+ LL  G D N  D  G++ LHLAA     +I  +L++ GA+++  +
Sbjct: 43  LHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYD 102
Query: 256 AQGESPLDCAPVTLQYKMRQKM 277
             G +PL  A ++ Q ++ + +
Sbjct: 103 RAGWTPLHLAALSGQLEIVEVL 124

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 44/75 (58%)
Query: 193 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 252
           G+ L +A + G    V+ L++ G D N  D+ G++ LHLAA     +I  +L++ GA+++
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVN 74
Query: 253 CKNAQGESPLDCAPV 267
            ++  G +PL  A +
Sbjct: 75  AEDNFGITPLHLAAI 89

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 200 IKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGE 259
           + NG    ++ LL    D N  DK G + LHLAA     +I  +L++ GA+++  + QG 
Sbjct: 55  VNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGY 114
Query: 260 SPLDCAP 266
           +PL  A 
Sbjct: 115 TPLHLAA 121

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 36/63 (57%)
Query: 203 GDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPL 262
           GD   V +LL  G D N+ +  G++ LH A + +  D+   L+E+GAN++  + +G  PL
Sbjct: 51  GDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPL 110
Query: 263 DCA 265
             A
Sbjct: 111 HAA 113

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 47/87 (54%)
Query: 193 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 252
           G+ L +A + G    V+ L++ G D N  D  G++ LHLAA     +I  +L++ GA+++
Sbjct: 15  GKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Query: 253 CKNAQGESPLDCAPVTLQYKMRQKMEE 279
            ++  G +PL  A      ++ + + E
Sbjct: 75  ARDIWGRTPLHLAATVGHLEIVEVLLE 101

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 49/97 (50%)
Query: 193 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 252
           G  L +A + G    V+ L++ G D N  D  G + LHLAA     +I  +L++ GA++D
Sbjct: 15  GRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVD 74
Query: 253 CKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS 289
             +  G +PL  A      ++ + + ++  +V +  S
Sbjct: 75  ASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDS 111

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 42/71 (59%)
Query: 193 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 252
           G+ L +A + G    V+ L++ G D N  DK G + LHLAA     +I  +L+++GA+++
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 253 CKNAQGESPLD 263
            ++  G++  D
Sbjct: 63  AQDKFGKTAFD 73

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 47/87 (54%)
Query: 193 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 252
           G+ L +A + G    V+ L++ G D N  D  G++ LHLAA     +I  +L++ GA+++
Sbjct: 15  GKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Query: 253 CKNAQGESPLDCAPVTLQYKMRQKMEE 279
             ++ G +PL  A      ++ + + E
Sbjct: 75  ASDSWGRTPLHLAATVGHLEIVEVLLE 101

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 208 VKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAP 266
           V+ LL  G D N  D  G + LHLAA     +I  +L++ GA+++ K+A G +PL  A 
Sbjct: 51  VEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAA 109

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 208 VKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN---------AQG 258
           VK LL +G   N  ++ G + LH AA  NR +IA +L+E GAN D K+         A  
Sbjct: 90  VKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAA 149
Query: 259 ESPLDCAPVTLQYKMRQKMEEDKNN 283
           +  L    + L YK    +++ + N
Sbjct: 150 KGNLKMIHILLYYKASTNIQDTEGN 174

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 208 VKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN---------AQG 258
           VK LL +G   N  ++ G + LH AA  NR +IA +L+E GAN D K+         A  
Sbjct: 89  VKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAA 148
Query: 259 ESPLDCAPVTLQYKMRQKMEEDKNN 283
           +  L    + L YK    +++ + N
Sbjct: 149 KGNLKMIHILLYYKASTNIQDTEGN 173

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 38/71 (53%)
Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L  A K G    V+ LL  G D N  D  G + LHLAA     +I  +L++ GA+++ K+
Sbjct: 51  LHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKD 110
Query: 256 AQGESPLDCAP 266
            +G +PL  A 
Sbjct: 111 YEGFTPLHLAA 121

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 193 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 252
           G+ L +A + G    V+ L++ G D N  D  G + LHLAA     +I  +L+++GA+++
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVN 74
Query: 253 CKNAQGESPLDCAPVT 268
             +  G +PL  A  T
Sbjct: 75  ASDLTGITPLHLAAAT 90

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 46/87 (52%)
Query: 193 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 252
           G+ L +A + G    V+ L++ G D N  D  G++ LHLAA     +I  +L++ GA+++
Sbjct: 15  GKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Query: 253 CKNAQGESPLDCAPVTLQYKMRQKMEE 279
             +  G +PL  A      ++ + + E
Sbjct: 75  ASDIWGRTPLHLAATVGHLEIVEVLLE 101

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 193 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 252
           G  L  A +N   A VKKLL  G D N    Q  S LH  A     ++A +LM+ GA+  
Sbjct: 135 GTPLYLACENQQRACVKKLLESGADVNQGKGQD-SPLHAVARTASEELACLLMDFGADTQ 193
Query: 253 CKNAQGESPLDCAP 266
            KNA+G+ P++  P
Sbjct: 194 AKNAEGKRPVELVP 207

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 177 VTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFN 236
           + NGA    + EY +    L  A  +G    V+ LL  G D N  D  G + LHLAA   
Sbjct: 34  MANGADVNAKDEYGLTP--LYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG 91
Query: 237 RTDIAFILMESGANMDCKNAQGESPLDCA 265
             +IA +L++ GA+++ ++  G++  D +
Sbjct: 92  HLEIAEVLLKHGADVNAQDKFGKTAFDIS 120

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 40/74 (54%)
Query: 193 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 252
           G+ L +A + G    V+ L + G D N  D  G + LHLAA+    +I  +L+++GA+++
Sbjct: 15  GKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVN 74
Query: 253 CKNAQGESPLDCAP 266
                G +PL  A 
Sbjct: 75  ATGNTGRTPLHLAA 88

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L  A   G    VK LL +G   N  ++ G + LH AA  NR +IA +L+E GAN D K+
Sbjct: 77  LHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136
Query: 256 ---------AQGESPLDCAPVTLQYKMRQKMEEDKNN 283
                    A  +  L    + L YK    +++ + N
Sbjct: 137 HYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGN 173

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 208 VKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN---------AQG 258
           VK LL +G   N  ++ G + LH AA  NR +IA +L+E GAN D K+         A  
Sbjct: 89  VKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAA 148
Query: 259 ESPLDCAPVTLQYKMRQKMEEDKNN 283
           +  L    + L YK    +++ + N
Sbjct: 149 KGNLKMVHILLFYKASTNIQDTEGN 173

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%)
Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L  A + G A  V  LLS+  + N  +K G++ LHL A      +A +L++ G  +D   
Sbjct: 249 LHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATT 308
Query: 256 AQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTSV 290
             G +PL  A      K+ + + + + +V + T +
Sbjct: 309 RMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKL 343

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 41/71 (57%)
Query: 193 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 252
           G+ L +A + G    V+ L++ G D    DK G + LHLAA     ++  +L+E+GA+++
Sbjct: 7   GKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVN 66
Query: 253 CKNAQGESPLD 263
            ++  G++  D
Sbjct: 67  AQDKFGKTAFD 77

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 193 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 252
           G  L  A +N   A VKKLL  G D N    Q  S LH        ++A +LM+ GA+  
Sbjct: 191 GTPLYLACENQQRACVKKLLESGADVNQGKGQD-SPLHAVVRTASEELACLLMDFGADTQ 249
Query: 253 CKNAQGESPLDCAP 266
            KNA+G+ P++  P
Sbjct: 250 AKNAEGKRPVELVP 263

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 43/86 (50%)
Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A  +G    V+KLL    D N  ++ G   LH A  + +  +A  L+ +GA +   N  G
Sbjct: 79  AASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYG 138
Query: 259 ESPLDCAPVTLQYKMRQKMEEDKNNV 284
           E P+D A   L+  +R++ E+   N+
Sbjct: 139 EMPVDKAKAPLRELLRERAEKMGQNL 164

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 193 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 252
           G+ L +A + G    V+ L++ G D N  D  G + LHLAA     +I  +L+++GA+++
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVN 74
Query: 253 CKNAQGESPLDCAP 266
             +  G +PL  A 
Sbjct: 75  ALDFSGSTPLHLAA 88

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	290
1vfy_A	73	Phosphatidylinositol-3-phosphate binding FYVE doma	2e-15
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-13
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	7e-12
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-04
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-13
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-10
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-13
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-12
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-11
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-11
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-04
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-13
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-11
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	9e-10
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-08
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-13
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-12
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-12
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-12
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-12
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-12
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-12
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	9e-13
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-11
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-10
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-10
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	9e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-06
1z2q_A	84	LM5-1; membrane protein, FYVE domain, zinc-finger;	1e-12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-10
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-07
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-06
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	2e-12
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-12
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-12
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-10
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-09
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-09
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-07
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-12
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-11
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-11
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-07
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	9e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-12
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-11
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-10
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-10
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-09
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-08
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-05
1dvp_A	220	HRS, hepatocyte growth factor-regulated tyrosine k	3e-12
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-12
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-12
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-07
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-06
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-12
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-09
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-08
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-06
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-04
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-12
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-05
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-12
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-11
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-11
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-10
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-07
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-06
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-12
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-09
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-06
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-12
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-12
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-09
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-09
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-06
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-12
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-11
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-08
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-07
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-11
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-11
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-11
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-09
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-11
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-11
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-09
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-07
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-06
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-11
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-11
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-10
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-09
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-11
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-10
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-10
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-08
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-11
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-10
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-09
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-09
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-07
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-05
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-11
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	5e-11
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-06
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-05
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-11
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-09
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-08
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-08
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-07
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-04
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-11
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-10
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-09
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-04
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-11
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-10
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-10
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-11
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-11
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-09
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-08
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-11
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-11
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-10
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	7e-04
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-11
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-10
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	7e-09
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	8e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-07
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-07
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-07
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-11
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-10
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	7e-10
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-04
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	6e-11
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-09
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-10
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-09
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-09
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	9e-09
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-07
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-06
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-06
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-10
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-10
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-10
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-09
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-04
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-10
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-09
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-09
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-07
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-10
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-09
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-08
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-09
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-09
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-09
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-08
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-08
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-04
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-10
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-10
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-04
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-04
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-10
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	6e-09
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-10
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-10
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-08
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-08
1wfk_A	88	Zinc finger, FYVE domain containing 19; riken stru	2e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-10
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-10
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-09
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-10
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-09
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-08
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-08
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-08
1x4u_A	84	Zinc finger, FYVE domain containing 27 isoform B;	1e-09
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-09
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-09
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-09
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-09
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-08
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-04
3t7l_A	90	Zinc finger FYVE domain-containing protein 16; str	1e-09
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-09
2rfa_A	232	Transient receptor potential cation channel subfa	2e-09
2rfa_A	232	Transient receptor potential cation channel subfa	7e-09
2rfa_A	232	Transient receptor potential cation channel subfa	2e-07
2rfa_A	232	Transient receptor potential cation channel subfa	1e-06
2rfa_A	232	Transient receptor potential cation channel subfa	4e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-09
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	9e-09
2yw8_A	82	RUN and FYVE domain-containing protein 1; structur	2e-08
2etb_A	256	Transient receptor potential cation channel subfam	4e-08
2etb_A	256	Transient receptor potential cation channel subfam	2e-07
2etb_A	256	Transient receptor potential cation channel subfam	2e-05
2etb_A	256	Transient receptor potential cation channel subfam	3e-05
2etb_A	256	Transient receptor potential cation channel subfam	4e-04
1joc_A	125	EEA1, early endosomal autoantigen 1; FYVE domain,	1e-07
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-07
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	6e-05
2pnn_A	273	Transient receptor potential cation channel subfa	2e-07
2pnn_A	273	Transient receptor potential cation channel subfa	1e-05
2pnn_A	273	Transient receptor potential cation channel subfa	3e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	6e-07
3jxi_A	260	Vanilloid receptor-related osmotically activated p	7e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	8e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-04

>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1 Length = 73

 Score = 68.5 bits (168), Expect = 2e-15
 Identities = 21/38 (55%), Positives = 24/38 (63%)

Query: 22 HHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFN 59
          HHCR CG   C EHSS+ + LP  GI+  VRVC  CF 
Sbjct: 28 HHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVCDSCFE 65

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 64.3 bits (158), Expect = 2e-13
 Identities = 22/67 (32%), Positives = 35/67 (52%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A+KNGD   VK  +++G D N   + G   LH AA   + +I   L+  GA+++  +   
Sbjct: 14  ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 73

Query: 259 ESPLDCA 265
            +PL  A
Sbjct: 74  ITPLLSA 80

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 60.5 bits (148), Expect = 7e-12
 Identities = 16/67 (23%), Positives = 26/67 (38%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A   G    ++ LL +G D N  DK  ++ L  A          +L+  GA+   K   G
Sbjct: 47  AADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDG 106

Query: 259 ESPLDCA 265
            +  +  
Sbjct: 107 LTAFEAT 113

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 39.3 bits (93), Expect = 2e-04
 Identities = 11/45 (24%), Positives = 17/45 (37%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDI 240
           L  A+  G  + VK LLS+G D       G++            +
Sbjct: 77  LLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL 121

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 66.9 bits (164), Expect = 2e-13
 Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 1/90 (1%)

Query: 177 VTNGATDKPRMEYEVNGE-GLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALF 235
           +    + +      +N    L DA   G+   V++ + E  D +  +++G++ LH A   
Sbjct: 5   LRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICG 64

Query: 236 NRTDIAFILMESGANMDCKNAQGESPLDCA 265
               I   L+ +GAN++  ++ G +PL CA
Sbjct: 65  ANYSIVDFLITAGANVNSPDSHGWTPLHCA 94

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 58.8 bits (143), Expect = 2e-10
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L +AI   + + V  L++ G + N  D  G + LH AA  N T I   L++ GA +    
Sbjct: 58  LHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATT 117

Query: 256 AQ-GESPLDCA 265
              G +  +  
Sbjct: 118 LSDGATAFEKC 128

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 8/68 (11%), Positives = 16/68 (23%), Gaps = 1/68 (1%)

Query: 198 DAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQ 257
           D  + G A     L          +   +  L   +     D           +  ++  
Sbjct: 129 DPYREGYADCATYLADVEQSMGLMNSGAVYALWDYS-AEFGDELSFREGESVTVLRRDGP 187

Query: 258 GESPLDCA 265
            E+    A
Sbjct: 188 EETDWWWA 195

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 67.1 bits (165), Expect = 4e-13
 Identities = 20/67 (29%), Positives = 32/67 (47%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A   G    +K L+    D N  D  G + LH AA + + +   IL+E+  +M+  N  G
Sbjct: 206 AAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVG 265

Query: 259 ESPLDCA 265
           ++  D A
Sbjct: 266 QTAFDVA 272

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 63.7 bits (156), Expect = 6e-12
 Identities = 23/67 (34%), Positives = 38/67 (56%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A  +GD   V +LL  G D N+ +  G++ LH A + +  D+   L+E+GAN++  + +G
Sbjct: 47  ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEG 106

Query: 259 ESPLDCA 265
             PL  A
Sbjct: 107 WIPLHAA 113

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 62.9 bits (154), Expect = 1e-11
 Identities = 24/67 (35%), Positives = 36/67 (53%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A  + +   VK L+  G + N  D +G   LH AA     DIA  L+  GA++   N++G
Sbjct: 80  ACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEG 139

Query: 259 ESPLDCA 265
           ++PLD A
Sbjct: 140 DTPLDIA 146

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 61.4 bits (150), Expect = 4e-11
 Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 188 EYEVNGEG------LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIA 241
           + EVN +G       ++  +     A + L S  ++     K G + LH+AA    T++ 
Sbjct: 156 QNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVL 215

Query: 242 FILMESGANMDCKNAQGESPLDCA 265
            +L+++  +++ K+  G +PL  A
Sbjct: 216 KLLIQARYDVNIKDYDGWTPLHAA 239

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 51.0 bits (123), Expect = 1e-07
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 1/67 (1%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
               G    ++  + +          G   L  A     T+    L+E GA+++  N  G
Sbjct: 15  KRWIGSETDLEPPVVKRKKTKVKFDDGAVFLA-ACSSGDTEEVLRLLERGADINYANVDG 73

Query: 259 ESPLDCA 265
            + L  A
Sbjct: 74  LTALHQA 80

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 41.7 bits (99), Expect = 1e-04
 Identities = 10/65 (15%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMES-GANMDCKNAQ 257
           A   G     + L+S+G      + +G + L +A      ++    +   G +++    +
Sbjct: 113 AASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKE 172

Query: 258 GESPL 262
            E  +
Sbjct: 173 EERIM 177

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 40.9 bits (97), Expect = 3e-04
 Identities = 9/57 (15%), Positives = 17/57 (29%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           A   G   A + L+    D    +K G +   +A       +  +  +       K 
Sbjct: 239 AAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKR 295

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 39.8 bits (94), Expect = 5e-04
 Identities = 5/44 (11%), Positives = 7/44 (15%)

Query: 222 DKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 265
           D +      L             +        K   G   L   
Sbjct: 5   DAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAAC 48

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 64.8 bits (159), Expect = 7e-13
 Identities = 23/70 (32%), Positives = 34/70 (48%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L  A  +G    V+KLL    D N  ++ G   LH A  + +  +A  L+ +GA +   N
Sbjct: 76  LHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICN 135

Query: 256 AQGESPLDCA 265
             GE P+D A
Sbjct: 136 KYGEMPVDKA 145

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 60.9 bits (149), Expect = 1e-11
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 199 AIKNGDAAAVKKLLSEG-VDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQ 257
             + G+A AV+  L     D N  D  G S LH A    R+ +  +L+  GA ++  N  
Sbjct: 12  QCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRG 71

Query: 258 GESPLDCA 265
            ++PL  A
Sbjct: 72  DDTPLHLA 79

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 55.9 bits (136), Expect = 9e-10
 Identities = 21/67 (31%), Positives = 33/67 (49%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A + G +A V+ L+  G   N  ++   + LHLAA     DI   L++  A+++  N  G
Sbjct: 46  ACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHG 105

Query: 259 ESPLDCA 265
             PL  A
Sbjct: 106 NVPLHYA 112

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 50.5 bits (122), Expect = 6e-08
 Identities = 11/57 (19%), Positives = 21/57 (36%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           A   G     + L++ G   + C+K G   +  A    R  +     + G N++   
Sbjct: 112 ACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIP 168

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 38.6 bits (91), Expect = 8e-04
 Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 1/45 (2%)

Query: 222 DKQGMSLLHLAALFNRTDIAFILMESGAN-MDCKNAQGESPLDCA 265
             + M  +             + +++  N ++  +  G SPL  A
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWA 46

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 67.1 bits (165), Expect = 8e-13
 Identities = 25/67 (37%), Positives = 35/67 (52%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A   G+   VK LL    D N   K G S LH AA    TDI  +L+++GA+ +  ++ G
Sbjct: 318 ASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDG 377

Query: 259 ESPLDCA 265
            +PL  A
Sbjct: 378 TTPLAIA 384

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 66.7 bits (164), Expect = 1e-12
 Identities = 23/70 (32%), Positives = 35/70 (50%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L  A + G A  V  LLS+  + N  +K G++ LHL A      +A +L++ G  +D   
Sbjct: 249 LHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATT 308

Query: 256 AQGESPLDCA 265
             G +PL  A
Sbjct: 309 RMGYTPLHVA 318

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 66.4 bits (163), Expect = 1e-12
 Identities = 19/67 (28%), Positives = 32/67 (47%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A + G    V  LL +        K+G + LH+AA + +  +A +L+E  A+ +     G
Sbjct: 120 AAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNG 179

Query: 259 ESPLDCA 265
            +PL  A
Sbjct: 180 LTPLHVA 186

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 66.4 bits (163), Expect = 2e-12
 Identities = 20/67 (29%), Positives = 36/67 (53%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A+ + +   VK LL  G   +     G + LH+AA  N+ ++A  L++ G + + ++ QG
Sbjct: 186 AVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQG 245

Query: 259 ESPLDCA 265
            +PL  A
Sbjct: 246 VTPLHLA 252

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 65.6 bits (161), Expect = 3e-12
 Identities = 22/70 (31%), Positives = 35/70 (50%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L  A   G    VK LL  G   N  + +  + LH+AA    T++A  L+++ A ++ K 
Sbjct: 18  LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA 77

Query: 256 AQGESPLDCA 265
              ++PL CA
Sbjct: 78  KDDQTPLHCA 87

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 64.8 bits (159), Expect = 4e-12
 Identities = 20/67 (29%), Positives = 28/67 (41%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A K G     + LL      N   K G++ LH+A   N  DI  +L+  G +       G
Sbjct: 153 AAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNG 212

Query: 259 ESPLDCA 265
            +PL  A
Sbjct: 213 YTPLHIA 219

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 64.8 bits (159), Expect = 5e-12
 Identities = 21/67 (31%), Positives = 30/67 (44%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A K       + LL  G  AN    QG++ LHLAA     ++  +L+   AN +  N  G
Sbjct: 219 AAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSG 278

Query: 259 ESPLDCA 265
            +PL   
Sbjct: 279 LTPLHLV 285

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 63.7 bits (156), Expect = 1e-11
 Identities = 21/70 (30%), Positives = 30/70 (42%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L  A + G     K LL      N   K   + LH AA    T++  +L+E+ AN +   
Sbjct: 51  LHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLAT 110

Query: 256 AQGESPLDCA 265
             G +PL  A
Sbjct: 111 TAGHTPLHIA 120

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 63.3 bits (155), Expect = 1e-11
 Identities = 21/70 (30%), Positives = 30/70 (42%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L  A + G    VK LL    + N     G + LH+AA     +    L+E  A+  C  
Sbjct: 84  LHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMT 143

Query: 256 AQGESPLDCA 265
            +G +PL  A
Sbjct: 144 KKGFTPLHVA 153

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 63.3 bits (155), Expect = 1e-11
 Identities = 16/67 (23%), Positives = 30/67 (44%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
             + G       L+  GV  +   + G + LH+A+ +    +   L++  A+++ K   G
Sbjct: 285 VAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLG 344

Query: 259 ESPLDCA 265
            SPL  A
Sbjct: 345 YSPLHQA 351

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 55.6 bits (135), Expect = 6e-09
 Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 3/73 (4%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILM---ESGANMD 252
           L  A + G    V  LL  G   N     G + L +A       +  +L    +  + + 
Sbjct: 348 LHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVL 407

Query: 253 CKNAQGESPLDCA 265
             +    S  +  
Sbjct: 408 VSDKHRMSFPETV 420

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 54.8 bits (133), Expect = 8e-09
 Identities = 15/53 (28%), Positives = 27/53 (50%)

Query: 213 SEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 265
           S G+      + G++ LH+A+      I   L++ GA+ +  N + E+PL  A
Sbjct: 2   SPGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMA 54

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 65.5 bits (161), Expect = 9e-13
 Identities = 24/70 (34%), Positives = 36/70 (51%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L  A + G  + V +L+  G D +  D +G S +HLAA F  T I   L+  G ++D  +
Sbjct: 80  LHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMD 139

Query: 256 AQGESPLDCA 265
             G +PL  A
Sbjct: 140 QNGMTPLMWA 149

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 60.9 bits (149), Expect = 3e-11
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCK- 254
           +  A + G     ++L+  G D    DK+ ++LLH AA+ NR D+    +  GA +D   
Sbjct: 13  IVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLG 72

Query: 255 NAQGESPLDCA 265
                +PL  A
Sbjct: 73  GDLNSTPLHWA 83

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 58.6 bits (143), Expect = 2e-10
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQ-GMSLLHLAALFNRTDIAFILMESGANMDCKNAQ 257
           A +       + LL+  V  N  DK    + LH A L   T +  +L+E+GAN+D +N +
Sbjct: 150 AYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIK 209

Query: 258 GESPLDCA 265
           GES LD A
Sbjct: 210 GESALDLA 217

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 57.4 bits (140), Expect = 5e-10
 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 1/71 (1%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDK-QGMSLLHLAALFNRTDIAFILMESGANMDCK 254
           L  A  N     VK  +S+G   +        + LH A       +   LM+ GA+    
Sbjct: 46  LHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLI 105

Query: 255 NAQGESPLDCA 265
           + +G S +  A
Sbjct: 106 DGEGCSCIHLA 116

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 55.1 bits (134), Expect = 4e-09
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           A+  G+   +  LL  G + +  + +G S L LA       +   L E+       N
Sbjct: 184 AVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYDN 240

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 54.0 bits (131), Expect = 9e-09
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALF-NRTDIAFILMESGANMDCK-NA 256
           A + G  + V  L+++G D +  D+ GM+ L  AA   +  D   +L+    +++     
Sbjct: 116 AAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKY 175

Query: 257 QGESPLDCA 265
              + L  A
Sbjct: 176 HKNTALHWA 184

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 45.1 bits (108), Expect = 8e-06
 Identities = 7/47 (14%), Positives = 17/47 (36%)

Query: 219 NFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 265
              D      +  A  +   +    L+E+G ++   + +  + L  A
Sbjct: 3   THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWA 49

>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major} Length = 84

 Score = 61.3 bits (149), Expect = 1e-12
 Identities = 16/44 (36%), Positives = 22/44 (50%)

Query: 22 HHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTG 65
          HHCR CG  LC + S  +  +P  GI    RVC  C+ +   + 
Sbjct: 38 HHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALRSSN 81

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 65.6 bits (161), Expect = 2e-12
 Identities = 22/70 (31%), Positives = 32/70 (45%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L +A   G     + LL  G   N  D    + LH AA  NR ++  +L+  GA+    N
Sbjct: 95  LHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVN 154

Query: 256 AQGESPLDCA 265
             G+S +D A
Sbjct: 155 CHGKSAVDMA 164

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 62.5 bits (153), Expect = 2e-11
 Identities = 15/67 (22%), Positives = 25/67 (37%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A +      ++ L   G   N  D  G + LH AAL        +L+  G++    + QG
Sbjct: 254 AAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQG 313

Query: 259 ESPLDCA 265
            +     
Sbjct: 314 FTAAQMG 320

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 61.7 bits (151), Expect = 4e-11
 Identities = 18/58 (31%), Positives = 32/58 (55%)

Query: 208 VKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 265
            + LL +G + N  +K  M+ LH+AA     D+  +L + GA M+  ++ G++ L  A
Sbjct: 230 AELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRA 287

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 61.0 bits (149), Expect = 7e-11
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 3/82 (3%)

Query: 187 MEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAAL---FNRTDIAFI 243
           + YE  G  L  A +  D A VKK L+  +      +   + LH A       R  +A +
Sbjct: 173 LTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAEL 232

Query: 244 LMESGANMDCKNAQGESPLDCA 265
           L+  GAN++ KN    +PL  A
Sbjct: 233 LLRKGANVNEKNKDFMTPLHVA 254

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 61.0 bits (149), Expect = 7e-11
 Identities = 20/67 (29%), Positives = 33/67 (49%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A    +   +  L    V+ +  D +  + LHLAA +NR  I  +L++ GA++  K+  G
Sbjct: 32  ARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGG 91

Query: 259 ESPLDCA 265
             PL  A
Sbjct: 92  LVPLHNA 98

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 59.4 bits (145), Expect = 2e-10
 Identities = 18/67 (26%), Positives = 31/67 (46%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A        V+ LL  G D +  DK G+  LH A  +   ++  +L++ GA ++  +   
Sbjct: 65  AAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQ 124

Query: 259 ESPLDCA 265
            +PL  A
Sbjct: 125 FTPLHEA 131

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 49.8 bits (120), Expect = 4e-07
 Identities = 11/56 (19%), Positives = 17/56 (30%), Gaps = 1/56 (1%)

Query: 211 LLSEGVDANFCDKQGM-SLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 265
           L      A    +     LL  A   N   +  +L     N    + +  +PL  A
Sbjct: 10  LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLA 65

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 46.7 bits (112), Expect = 3e-06
 Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 7/70 (10%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L  A   G     + LLS G D +    QG +   +       +    ++     M   +
Sbjct: 284 LHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN-----EAVQQILSESTPMRTSD 338

Query: 256 AQGESPLDCA 265
                 L  A
Sbjct: 339 VDY--RLLEA 346

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 46.7 bits (112), Expect = 4e-06
 Identities = 14/91 (15%), Positives = 22/91 (24%), Gaps = 21/91 (23%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILME--------- 246
           L +A           LLS G D    +  G S + +A      +      +         
Sbjct: 128 LHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAR 187

Query: 247 ------------SGANMDCKNAQGESPLDCA 265
                              +    E+ L CA
Sbjct: 188 EADLAKVKKTLALEIINFKQPQSHETALHCA 218

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Length = 226

 Score = 64.4 bits (156), Expect = 2e-12
 Identities = 20/43 (46%), Positives = 27/43 (62%)

Query: 21  QHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSR 63
           +HHCR CG+  C + SS   T+P+FGI   VRVC  C+   +R
Sbjct: 180 KHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLNR 222

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 65.2 bits (160), Expect = 2e-12
 Identities = 19/70 (27%), Positives = 33/70 (47%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           + +A  +G   +++ L+S+G   N      +S LH A L        IL++ GA ++   
Sbjct: 63  MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT 122

Query: 256 AQGESPLDCA 265
           A   +PL  A
Sbjct: 123 ADWHTPLFNA 132

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 63.3 bits (155), Expect = 8e-12
 Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A +N   A VKKLL  G D N   K   S LH        ++A +LM+ GA+   KNA+G
Sbjct: 197 ACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEG 255

Query: 259 ESPLDCA 265
           + P++  
Sbjct: 256 KRPVELV 262

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 57.9 bits (141), Expect = 6e-10
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L +A  +G    V  LL  G      +    S +H AA     +    L+  G N+D K 
Sbjct: 129 LFNACVSGSWDCVNLLLQHGASVQ-PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKI 187

Query: 256 AQGESPLDCA 265
           +   +PL  A
Sbjct: 188 SHLGTPLYLA 197

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 56.7 bits (138), Expect = 1e-09
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L +A   G  + VK LL  G   N       + L  A +    D   +L++ GA++  ++
Sbjct: 96  LHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES 155

Query: 256 AQGESPLDCA 265
               SP+  A
Sbjct: 156 -DLASPIHEA 164

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 56.7 bits (138), Expect = 2e-09
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A + G    V  L++ G + +       + L+LA    +      L+ESGA+++ +    
Sbjct: 164 AARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQ 222

Query: 259 ESPLDCA 265
           +SPL   
Sbjct: 223 DSPLHAV 229

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 51.0 bits (123), Expect = 1e-07
 Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 202 NGDAAAVK-KLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGES 260
            G       +LLS  +  +       S +H AA+         L+  G  ++   A   S
Sbjct: 37  AGPRDFPGIRLLSNPLMGD--AVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVS 94

Query: 261 PLDCA 265
           PL  A
Sbjct: 95  PLHEA 99

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 9/67 (13%), Positives = 17/67 (25%), Gaps = 2/67 (2%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
              +        L+  G      D +   +        R      L+ +    D  +   
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVS--D 59

Query: 259 ESPLDCA 265
            SP+  A
Sbjct: 60  WSPMHEA 66

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 41.3 bits (98), Expect = 2e-04
 Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 1/54 (1%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 252
            ++         L+  G D    + +G   + L    +     F L   GA++ 
Sbjct: 229 VVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLF-LEREGASLP 281

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 62.8 bits (154), Expect = 3e-12
 Identities = 14/70 (20%), Positives = 28/70 (40%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           +      G+   +   + +    N  D++G + L  AA   +  +   L+++GA+     
Sbjct: 7   VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 66

Query: 256 AQGESPLDCA 265
              ES L  A
Sbjct: 67  KGRESALSLA 76

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 60.9 bits (149), Expect = 1e-11
 Identities = 22/67 (32%), Positives = 32/67 (47%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A  +G  A V+ LL  G D     K   S L LA     TDI  +L++ G +++  +  G
Sbjct: 43  AAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG 102

Query: 259 ESPLDCA 265
            +PL  A
Sbjct: 103 GTPLLYA 109

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 60.9 bits (149), Expect = 1e-11
 Identities = 24/70 (34%), Positives = 31/70 (44%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L  A   G    VK LL  GVD N  D  G + L  A   N      +L+ESGA+   + 
Sbjct: 73  LSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIET 132

Query: 256 AQGESPLDCA 265
             G + +D A
Sbjct: 133 DSGYNSMDLA 142

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 49.3 bits (119), Expect = 2e-07
 Identities = 11/60 (18%), Positives = 18/60 (30%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L  A+       VK LL  G D       G + + LA       +  ++      +    
Sbjct: 106 LLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNI 165

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 41.2 bits (98), Expect = 9e-05
 Identities = 7/41 (17%), Positives = 14/41 (34%)

Query: 225 GMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 265
               +H  A           +E    ++  + +G +PL  A
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWA 43

>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Length = 220

 Score = 63.6 bits (154), Expect = 3e-12
 Identities = 19/43 (44%), Positives = 27/43 (62%)

Query: 21  QHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSR 63
           +HHCR CG+  C + ++ Q  LP++GI   VRVC  CF +  R
Sbjct: 177 KHHCRNCGQVFCGQCTAKQCPLPKYGIEKEVRVCDGCFAALQR 219

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 61.7 bits (151), Expect = 4e-12
 Identities = 22/70 (31%), Positives = 30/70 (42%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L +A  +G    V+ LL      N    Q  S LH AA     DI  +L+  GA+ +  N
Sbjct: 47  LHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN 106

Query: 256 AQGESPLDCA 265
             G  P+D  
Sbjct: 107 IFGLRPVDYT 116

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 60.9 bits (149), Expect = 6e-12
 Identities = 21/67 (31%), Positives = 31/67 (46%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A   GD  +V+ LL  G D N  D  G + LH A       +  +L++  A ++    Q 
Sbjct: 17  ASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQN 76

Query: 259 ESPLDCA 265
           +SPL  A
Sbjct: 77  DSPLHDA 83

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 46.6 bits (112), Expect = 8e-07
 Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 215 GVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 265
           G+D    + +G +LLH+A++         L+++G++ + K+  G +PL  A
Sbjct: 1   GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEA 50

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 46.3 bits (111), Expect = 1e-06
 Identities = 14/55 (25%), Positives = 24/55 (43%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGAN 250
           L DA KNG    VK LLS G   N  +  G+  +      +   +  +  ++ ++
Sbjct: 80  LHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 62.9 bits (154), Expect = 4e-12
 Identities = 16/67 (23%), Positives = 32/67 (47%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A +       + L       +  D +G + L++A   N  +IA  L++ GA+++ +N+  
Sbjct: 13  ANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSIS 72

Query: 259 ESPLDCA 265
           +SP   A
Sbjct: 73  DSPYLYA 79

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 54.4 bits (132), Expect = 4e-09
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGA-NMDCK 254
           L  A+ N D    K L+  G D N  +    S    A    RT+I   +++    +++  
Sbjct: 43  LNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKH 102

Query: 255 NAQGESPLDCA 265
           N  G + L  A
Sbjct: 103 NRYGGNALIPA 113

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 51.7 bits (125), Expect = 3e-08
 Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 13/96 (13%)

Query: 179 NGATDKPRMEYEVNGEG---LRDAIKNGDAAAVKKLLSEG-VDANFCDKQGMSLLHLAAL 234
           +   D      + N  G   L  A + G    VK LL +G  D +F +  G + L  A  
Sbjct: 94  HATPDL----NKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVG 149

Query: 235 FNR-----TDIAFILMESGANMDCKNAQGESPLDCA 265
                    DI  +LME+GA+   K+  G + +D A
Sbjct: 150 LREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYA 185

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 45.5 bits (109), Expect = 4e-06
 Identities = 10/44 (22%), Positives = 21/44 (47%)

Query: 222 DKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 265
             +  +LL  A   +   +  IL ++   +D  + +G +PL+ A
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIA 46

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 40.9 bits (97), Expect = 1e-04
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 201 KNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILME 246
                  VK L+  G D +  D  G + +  A     T+I+ IL +
Sbjct: 154 NQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 60.1 bits (147), Expect = 4e-12
 Identities = 27/67 (40%), Positives = 39/67 (58%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A +NG    VK LL  G D N  DK G + LHLAA     ++  +L+E+GA+++ K+  G
Sbjct: 9   AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68

Query: 259 ESPLDCA 265
            +PL  A
Sbjct: 69  RTPLHLA 75

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 42.3 bits (101), Expect = 1e-05
 Identities = 23/54 (42%), Positives = 30/54 (55%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGA 249
           L  A +NG    VK LL  G D N  DK G + LHLAA     ++  +L+E+GA
Sbjct: 39  LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 39.3 bits (93), Expect = 1e-04
 Identities = 15/41 (36%), Positives = 26/41 (63%)

Query: 225 GMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 265
           G + LHLAA     ++  +L+E+GA+++ K+  G +PL  A
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 42

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 63.2 bits (155), Expect = 5e-12
 Identities = 23/70 (32%), Positives = 36/70 (51%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L  A  +G     + LL+   D +  +  G S LH+AA  NR D   + +   +++  KN
Sbjct: 148 LHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKN 207

Query: 256 AQGESPLDCA 265
            +GE+PL CA
Sbjct: 208 KEGETPLQCA 217

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 61.7 bits (151), Expect = 2e-11
 Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 7/90 (7%)

Query: 179 NGATDKPRMEYEVNGEG---LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALF 235
           NG  D        +  G   +  A +      VK LLS+G D N  D +    LH AA  
Sbjct: 99  NGQMDV----NCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFS 154

Query: 236 NRTDIAFILMESGANMDCKNAQGESPLDCA 265
              DIA IL+ +  ++   N  G+SPL  A
Sbjct: 155 GCVDIAEILLAAKCDLHAVNIHGDSPLHIA 184

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 60.9 bits (149), Expect = 3e-11
 Identities = 18/67 (26%), Positives = 32/67 (47%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A + G       L+  G + + C +   + L  AA  N  +    L+++GA +D K+A+G
Sbjct: 18  AAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEG 77

Query: 259 ESPLDCA 265
            + L  A
Sbjct: 78  STCLHLA 84

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 56.7 bits (138), Expect = 8e-10
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGA-NMDCK 254
           L +A +N    AVK L+  G   +  D +G + LHLAA     ++   L+ +G  +++C+
Sbjct: 48  LMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQ 107

Query: 255 NAQGESPLDCA 265
           +  G +P+  A
Sbjct: 108 DDGGWTPMIWA 118

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 49.3 bits (119), Expect = 3e-07
 Identities = 15/50 (30%), Positives = 25/50 (50%)

Query: 216 VDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 265
           ++     +   S LH AA     DI  +L+++GAN+D  +    +PL  A
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEA 51

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 44.7 bits (107), Expect = 9e-06
 Identities = 11/52 (21%), Positives = 22/52 (42%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGAN 250
           A +      V   LS   D    +K+G + L  A+L ++   A  + ++  +
Sbjct: 184 AARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 60.5 bits (148), Expect = 6e-12
 Identities = 28/67 (41%), Positives = 39/67 (58%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A KNG A  VKKLLS+G D N   K G + LHLAA     +I  +L+  GA+++ ++  G
Sbjct: 16  AAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDG 75

Query: 259 ESPLDCA 265
            +P   A
Sbjct: 76  NTPEHLA 82

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 53.5 bits (130), Expect = 2e-09
 Identities = 21/64 (32%), Positives = 31/64 (48%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A KNG A  VK LL++G D N   K G +  HLA      +I  +L   GA+++ ++   
Sbjct: 49  AAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGS 108

Query: 259 ESPL 262
               
Sbjct: 109 SHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 44.3 bits (106), Expect = 3e-06
 Identities = 13/48 (27%), Positives = 23/48 (47%)

Query: 218 ANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 265
             +  K G + LH AA     +    L+  GA+++ ++  G +PL  A
Sbjct: 2   HMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLA 49

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 62.8 bits (154), Expect = 7e-12
 Identities = 17/67 (25%), Positives = 28/67 (41%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A    +  A   LL  G + +  + +  + L LAA     + A +L++  AN D  +   
Sbjct: 132 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMD 191

Query: 259 ESPLDCA 265
             P D A
Sbjct: 192 RLPRDIA 198

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 62.4 bits (153), Expect = 8e-12
 Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 7/90 (7%)

Query: 179 NGATDKPRMEYEVNGEG---LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALF 235
           N ATD          +G   L  A +      ++ L++   D N  D  G S LH AA  
Sbjct: 80  NRATDL----DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV 135

Query: 236 NRTDIAFILMESGANMDCKNAQGESPLDCA 265
           N  D A +L+++GAN D +N + E+PL  A
Sbjct: 136 NNVDAAVVLLKNGANKDMQNNREETPLFLA 165

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 56.6 bits (138), Expect = 1e-09
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGA-NMDCKNAQ 257
           A +   + A K+LL    DAN  D  G + LH A   +   +  IL+ + A ++D +   
Sbjct: 32  AARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHD 91

Query: 258 GESPLDCA 265
           G +PL  A
Sbjct: 92  GTTPLILA 99

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 54.3 bits (132), Expect = 6e-09
 Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 208 VKKLLSEGVD-ANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 265
           +   + +G    N  D+ G + LHLAA ++R+D A  L+E+ A+ + ++  G +PL  A
Sbjct: 7   ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 65

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 45.9 bits (110), Expect = 4e-06
 Identities = 12/55 (21%), Positives = 17/55 (30%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGAN 250
           L  A + G     K LL    + +  D        +A      DI  +L E    
Sbjct: 162 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLV 216

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 62.6 bits (153), Expect = 8e-12
 Identities = 20/70 (28%), Positives = 39/70 (55%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L D+   G+   V++++ E  D +  + +G++ LH A     T+I   L++ G N++  +
Sbjct: 41  LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100

Query: 256 AQGESPLDCA 265
           + G +PL CA
Sbjct: 101 SDGWTPLHCA 110

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 61.1 bits (149), Expect = 3e-11
 Identities = 11/70 (15%), Positives = 27/70 (38%), Gaps = 1/70 (1%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L    +        + ++ G+   F +   ++LL  ++L    D+   ++    +    N
Sbjct: 9   LPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPN 67

Query: 256 AQGESPLDCA 265
            +G + L  A
Sbjct: 68  DEGITALHNA 77

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 51.1 bits (123), Expect = 8e-08
 Identities = 21/63 (33%), Positives = 29/63 (46%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L +A+  G    VK L+  GV+ N  D  G + LH AA  N   +   L+ESGA +    
Sbjct: 74  LHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMT 133

Query: 256 AQG 258
              
Sbjct: 134 YSD 136

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 12/73 (16%), Positives = 17/73 (23%), Gaps = 3/73 (4%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVD---ANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 252
           L  A    +    K L+  G       + D Q  +          T  +  L      M 
Sbjct: 107 LHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMG 166

Query: 253 CKNAQGESPLDCA 265
             N      L   
Sbjct: 167 IMNKGVIYALWDY 179

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 60.9 bits (149), Expect = 1e-11
 Identities = 21/67 (31%), Positives = 33/67 (49%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A   G+   V+ LL  G D +   K+  S L LA+    TDI  +L+E   +++  +  G
Sbjct: 43  ASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNG 102

Query: 259 ESPLDCA 265
            +PL  A
Sbjct: 103 GTPLLYA 109

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 60.9 bits (149), Expect = 1e-11
 Identities = 21/70 (30%), Positives = 28/70 (40%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L  A   G    V  LL   VD N  D  G + L  A   N       L+  GA++  + 
Sbjct: 73  LSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEA 132

Query: 256 AQGESPLDCA 265
             G +P+D A
Sbjct: 133 DSGYTPMDLA 142

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 60.5 bits (148), Expect = 2e-11
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDA-NFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCK 254
           +      G+   +K+ L +G +  N  D++G + L  A+ F   +    L+E GA+    
Sbjct: 6   IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65

Query: 255 NAQGESPLDCA 265
             + ES L  A
Sbjct: 66  AKERESALSLA 76

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 53.2 bits (129), Expect = 6e-09
 Identities = 11/63 (17%), Positives = 21/63 (33%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A++      V+ LL+ G D       G + + LA       +  ++      +   N   
Sbjct: 109 AVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVP 168

Query: 259 ESP 261
             P
Sbjct: 169 ADP 171

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 61.9 bits (151), Expect = 1e-11
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 196 LRDAIKNGDAAAVKKLLSE-GVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCK 254
           L  A   G    V+ L ++  ++ N  +K G + LH AA     DI  +L+  GA  D +
Sbjct: 110 LYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLR 169

Query: 255 NAQGESPLDCA 265
           N + +   D A
Sbjct: 170 NIEKKLAFDMA 180

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 60.7 bits (148), Expect = 3e-11
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIA-FILMESGANMDCK 254
           L +A K G+ + +++ L   V  N  DK G + L+ A      DI   +  +    ++ +
Sbjct: 77  LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQ 136

Query: 255 NAQGESPLDCA 265
           N  G++ L  A
Sbjct: 137 NKLGDTALHAA 147

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 54.9 bits (133), Expect = 4e-09
 Identities = 12/70 (17%), Positives = 24/70 (34%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L  A   G A  V+ LL++G   +  + +      +A       +      + A     N
Sbjct: 144 LHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSN 203

Query: 256 AQGESPLDCA 265
           A+     + +
Sbjct: 204 AEDYLDDEDS 213

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 49.9 bits (120), Expect = 1e-07
 Identities = 10/71 (14%), Positives = 19/71 (26%), Gaps = 6/71 (8%)

Query: 201 KNGDAA---AVKK---LLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCK 254
              D        K    L          +   + LH AA           +++   ++  
Sbjct: 43  DMSDTNWWKGTSKGRTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGL 102

Query: 255 NAQGESPLDCA 265
           +  G + L  A
Sbjct: 103 DKAGSTALYWA 113

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 9/67 (13%), Positives = 19/67 (28%), Gaps = 5/67 (7%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A+   +     +L  E  D  +      +         RT +          +  +    
Sbjct: 19  ALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGL-----IPSNYVAEQAESI 73

Query: 259 ESPLDCA 265
           ++PL  A
Sbjct: 74  DNPLHEA 80

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 62.1 bits (152), Expect = 1e-11
 Identities = 24/67 (35%), Positives = 36/67 (53%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A +      ++ L++   D N  D  G S LH AA  N  D A +L+++GAN D +N + 
Sbjct: 131 AARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE 190

Query: 259 ESPLDCA 265
           E+PL  A
Sbjct: 191 ETPLFLA 197

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 61.3 bits (150), Expect = 3e-11
 Identities = 18/70 (25%), Positives = 29/70 (41%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L  A    +  A   LL  G + +  + +  + L LAA     + A +L++  AN D  +
Sbjct: 161 LHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 220

Query: 256 AQGESPLDCA 265
                P D A
Sbjct: 221 HMDRLPRDIA 230

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 57.9 bits (141), Expect = 5e-10
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGA-NMDCK 254
           L  A +   + A K+LL    DAN  D  G + LH A   +   +  IL+ + A ++D +
Sbjct: 61  LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 120

Query: 255 NAQGESPLDCA 265
              G +PL  A
Sbjct: 121 MHDGTTPLILA 131

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 56.3 bits (137), Expect = 1e-09
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%)

Query: 194 EGLRDAIKNGDAAAVKKLLSEGVD-ANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 252
           E      +    A +   + +G    N  D+ G + LHLAA ++R+D A  L+E+ A+ +
Sbjct: 25  ETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN 84

Query: 253 CKNAQGESPLDCA 265
            ++  G +PL  A
Sbjct: 85  IQDNMGRTPLHAA 97

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 49.4 bits (119), Expect = 3e-07
 Identities = 10/57 (17%), Positives = 17/57 (29%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           A + G     K LL    + +  D        +A      DI  +L     +    +
Sbjct: 197 AAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHHH 253

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 62.6 bits (153), Expect = 2e-11
 Identities = 16/67 (23%), Positives = 25/67 (37%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A++   A+ ++ LL  G D       G + L  A L     +A +L   GA         
Sbjct: 199 AVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDK 258

Query: 259 ESPLDCA 265
            SP   +
Sbjct: 259 LSPCSSS 265

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 59.1 bits (144), Expect = 2e-10
 Identities = 12/68 (17%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNA-Q 257
           +  N +     +     +     +  G + LH+A +    ++  +L ++GA+++      
Sbjct: 132 SQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTC 191

Query: 258 GESPLDCA 265
           G +PL  A
Sbjct: 192 GRTPLHLA 199

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 58.3 bits (142), Expect = 3e-10
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDK-QGMSLLHLAALFNRTDIAFILMESGANMDCKNAQ 257
           A+ + DA  V+ L   G D N  +   G + LHLA       +  +L+++GA+   +   
Sbjct: 165 AVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYG 224

Query: 258 GESPLDCA 265
           G +PL  A
Sbjct: 225 GRTPLGSA 232

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 56.0 bits (136), Expect = 3e-09
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 3/70 (4%)

Query: 199 AIKNGDAAAVKKLLSEGVDA---NFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           A+ +     +  LL         +  +  G + LHLAA+         L  +GA +    
Sbjct: 16  AVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAE 75

Query: 256 AQGESPLDCA 265
             G + L  A
Sbjct: 76  RGGHTALHLA 85

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 52.9 bits (128), Expect = 2e-08
 Identities = 14/64 (21%), Positives = 26/64 (40%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A   G+A+ V+KL + G      ++ G + LHLA        A +L++   +     +  
Sbjct: 52  AAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDT 111

Query: 259 ESPL 262
               
Sbjct: 112 YLTQ 115

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 44.8 bits (107), Expect = 1e-05
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 219 NFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQ---GESPLDCA 265
            +  + G + LHLA +         L+   A  +  + Q   G++ L  A
Sbjct: 3   GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLA 52

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 42.9 bits (102), Expect = 4e-05
 Identities = 8/81 (9%), Positives = 16/81 (19%), Gaps = 14/81 (17%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMS--------------LLHLAALFNRTDIAFIL 244
           A +         LL                                 +      +     
Sbjct: 85  ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRD 144

Query: 245 MESGANMDCKNAQGESPLDCA 265
            +    ++ +N  G +PL  A
Sbjct: 145 EDWRLQLEAENYDGHTPLHVA 165

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 42.9 bits (102), Expect = 5e-05
 Identities = 5/43 (11%), Positives = 13/43 (30%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIA 241
           A+   +    + L + G          +S    +   + +D  
Sbjct: 232 ALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNR 274

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 61.7 bits (151), Expect = 2e-11
 Identities = 21/67 (31%), Positives = 32/67 (47%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A++N   + V+ LL  G + N     G S LH A+      +   L+ SGA+   KN   
Sbjct: 157 AVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHN 216

Query: 259 ESPLDCA 265
           ++PL  A
Sbjct: 217 DTPLMVA 223

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 57.8 bits (141), Expect = 5e-10
 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 5/91 (5%)

Query: 179 NGATDKPRMEYEVNGEG---LRDAIKNGDAAAVKKLLSEGVDANFCD-KQGMSLLHLAAL 234
           + A     +E   N +G   L  A+       V+ LL  G D +  D K G S L  A  
Sbjct: 101 SAAPGTLDLE-ARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVE 159

Query: 235 FNRTDIAFILMESGANMDCKNAQGESPLDCA 265
            N   +  +L++ GAN++ +   G S L  A
Sbjct: 160 NNSLSMVQLLLQHGANVNAQMYSGSSALHSA 190

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 55.5 bits (135), Expect = 3e-09
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGA----NMDCK 254
           A+     + V+ L++ G      D+ G +  HLA           L++S A    +++ +
Sbjct: 53  AVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEAR 112

Query: 255 NAQGESPLDCA 265
           N  G + L  A
Sbjct: 113 NYDGLTALHVA 123

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 55.2 bits (134), Expect = 4e-09
 Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 199 AIKNGDAAAVKKLLSE----GVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCK 254
           A+  G+  AV +L++     G + +  +    + LHLA +     +  +L+ +GA+    
Sbjct: 16  AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMAL 75

Query: 255 NAQGESPLDCA 265
           +  G++    A
Sbjct: 76  DRHGQTAAHLA 86

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 48.2 bits (116), Expect = 7e-07
 Identities = 11/52 (21%), Positives = 19/52 (36%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGAN 250
           A   G    V+ L+  G D++  +    + L +A      DI        A+
Sbjct: 190 ASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPAS 241

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 44.0 bits (105), Expect = 2e-05
 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 4/52 (7%)

Query: 218 ANFCDKQGMSLLHLAALFNRTDIAFILME----SGANMDCKNAQGESPLDCA 265
           A   D+ G + LH+A +         L+      G  +D  N   ++PL  A
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLA 53

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 59.3 bits (145), Expect = 2e-11
 Identities = 28/70 (40%), Positives = 40/70 (57%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L  A +NG    VK LL  G D N  DK G + LHLAA     ++  +L+E+GA+++ K+
Sbjct: 39  LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 98

Query: 256 AQGESPLDCA 265
             G +PL  A
Sbjct: 99  KNGRTPLHLA 108

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 58.1 bits (142), Expect = 5e-11
 Identities = 27/67 (40%), Positives = 39/67 (58%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A +NG    VK LL  G D N  DK G + LHLAA     ++  +L+E+GA+++ K+  G
Sbjct: 9   AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68

Query: 259 ESPLDCA 265
            +PL  A
Sbjct: 69  RTPLHLA 75

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 44.3 bits (106), Expect = 4e-06
 Identities = 22/51 (43%), Positives = 29/51 (56%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGA 249
           A +NG    VK LL  G D N  DK G + LHLAA     ++  +L+E+GA
Sbjct: 75  AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 41.2 bits (98), Expect = 4e-05
 Identities = 15/41 (36%), Positives = 26/41 (63%)

Query: 225 GMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 265
           G + LHLAA     ++  +L+E+GA+++ K+  G +PL  A
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 42

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 61.4 bits (149), Expect = 2e-11
 Identities = 17/70 (24%), Positives = 30/70 (42%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
              A         +++L++   A   D+   + LH A     T+I   L++ G  ++ K+
Sbjct: 11  CNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD 70

Query: 256 AQGESPLDCA 265
             G SPL  A
Sbjct: 71  DAGWSPLHIA 80

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 24/67 (35%), Positives = 32/67 (47%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A   G    V+ LL  GV  N  D  G S LH+AA     +I   L+  GA+++  N  G
Sbjct: 47  ACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNG 106

Query: 259 ESPLDCA 265
            +PL  A
Sbjct: 107 CTPLHYA 113

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 51.8 bits (124), Expect = 4e-08
 Identities = 21/70 (30%), Positives = 33/70 (47%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           +  A   G+   V  LL      N  D +G + LHLA    R + A  L+  GA++  +N
Sbjct: 143 MHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIEN 202

Query: 256 AQGESPLDCA 265
            + ++PL  A
Sbjct: 203 KEEKTPLQVA 212

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 51.8 bits (124), Expect = 4e-08
 Identities = 26/70 (37%), Positives = 36/70 (51%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L  A   G    VK LL +G   N  ++ G + LH AA  NR +IA +L+E GAN D K+
Sbjct: 77  LHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136

Query: 256 AQGESPLDCA 265
               + +  A
Sbjct: 137 HYDATAMHRA 146

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 50.3 bits (120), Expect = 1e-07
 Identities = 16/70 (22%), Positives = 28/70 (40%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L  A           LL  G + +  D    + +H AA      +  IL+   A+ + ++
Sbjct: 110 LHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQD 169

Query: 256 AQGESPLDCA 265
            +G +PL  A
Sbjct: 170 TEGNTPLHLA 179

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 4/41 (9%), Positives = 14/41 (34%)

Query: 225 GMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 265
            + + +LA      ++   ++   +     +    + L  A
Sbjct: 7   NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWA 47

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 59.7 bits (146), Expect = 2e-11
 Identities = 20/70 (28%), Positives = 34/70 (48%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L  A   G A  V+ LL  G D N  D   M+ LH A   N  ++  +L++ GA++  ++
Sbjct: 71  LHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQS 130

Query: 256 AQGESPLDCA 265
              ++  D +
Sbjct: 131 KFCKTAFDIS 140

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 55.9 bits (136), Expect = 6e-10
 Identities = 18/67 (26%), Positives = 33/67 (49%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A + G  +  + LL  GV  +   K   + LH+AA     +I  +L++ GA+++ K+   
Sbjct: 41  AAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLK 100

Query: 259 ESPLDCA 265
            + L  A
Sbjct: 101 MTALHWA 107

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 54.3 bits (132), Expect = 2e-09
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L +A + G    V+ L++ G      D  G S LHLAA +       +L+ +G + D + 
Sbjct: 6   LLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART 64

Query: 256 AQGESPLDCA 265
               +PL  A
Sbjct: 65  KVDRTPLHMA 74

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 40.4 bits (96), Expect = 1e-04
 Identities = 11/49 (22%), Positives = 20/49 (40%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFIL 244
           L  A ++     V+ L+  G D +   K   +   ++      D+A IL
Sbjct: 104 LHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 59.7 bits (146), Expect = 2e-11
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           + DA + G    +K L+  G D N  D  G   +HLA     T +   L  + +++  ++
Sbjct: 72  VHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRD 130

Query: 256 AQGESPLDCA 265
           A+G +PL+ A
Sbjct: 131 ARGLTPLELA 140

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 57.0 bits (139), Expect = 3e-10
 Identities = 20/64 (31%), Positives = 30/64 (46%)

Query: 202 NGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESP 261
            G  A   +LL +G   N  D  G S +H AA     D   +L+E GA+++  +  G  P
Sbjct: 45  FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALP 104

Query: 262 LDCA 265
           +  A
Sbjct: 105 IHLA 108

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 56.7 bits (138), Expect = 3e-10
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 196 LRDAIKNGDAAAVKKLL-SEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCK 254
           L  A   GD   V++LL  E V  +  ++ G + L +   F  T IA  L++ GA+ + +
Sbjct: 6   LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQ 64

Query: 255 NAQGESPLDCA 265
           +  G SP+  A
Sbjct: 65  DTSGTSPVHDA 75

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 60.2 bits (147), Expect = 3e-11
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 5/80 (6%)

Query: 190 EVNGEG---LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILME 246
           +V  E       A +  D  A+ +LL E  D +  D+ G + L   A         +L E
Sbjct: 39  DVVSEYETPWWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAE 97

Query: 247 SGANMDCKNAQ-GESPLDCA 265
           +GA++D ++ + G + L  A
Sbjct: 98  AGADLDHRDMRGGLTALHMA 117

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 59.4 bits (145), Expect = 5e-11
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCD-KQGMSLLHLAALFNRTDIAFILMESGANMDCK 254
           L      G    V+ L   G D +  D + G++ LH+AA + R ++   L+E GA+++ +
Sbjct: 80  LLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVE 139

Query: 255 NAQGESPLDCA 265
           + +G + L+ A
Sbjct: 140 DERGLTALELA 150

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 53.7 bits (130), Expect = 5e-09
 Identities = 13/79 (16%), Positives = 23/79 (29%), Gaps = 7/79 (8%)

Query: 190 EVNGEG---LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILME 246
              GEG        K+G + +         D      +  +    AA          L+E
Sbjct: 9   RTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADEQALSQLLE 65

Query: 247 SGANMDCKNAQGESPLDCA 265
              ++D  +  G + L   
Sbjct: 66  -DRDVDAVDENGRTALLFV 83

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 51.7 bits (125), Expect = 3e-08
 Identities = 13/58 (22%), Positives = 23/58 (39%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNA 256
           A        V+ L+  G D    D++G++ L LA    +T      M+ G  +  +  
Sbjct: 117 AAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKV 174

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 59.7 bits (146), Expect = 3e-11
 Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 4/79 (5%)

Query: 191 VNGEG---LRDAIKNGDAAAVKKLLSE-GVDANFCDKQGMSLLHLAALFNRTDIAFILME 246
            N E    L +A K GD   VKKL +   V+    + +  + LH AA +NR  +   L++
Sbjct: 4   GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 63

Query: 247 SGANMDCKNAQGESPLDCA 265
            GA++  K+  G  PL  A
Sbjct: 64  HGADVHAKDKGGLVPLHNA 82

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 59.7 bits (146), Expect = 3e-11
 Identities = 21/70 (30%), Positives = 32/70 (45%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L +A   G     + L+  G   N  D    + LH AA   + +I  +L++ GA+   KN
Sbjct: 79  LHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN 138

Query: 256 AQGESPLDCA 265
             G +PLD  
Sbjct: 139 RDGNTPLDLV 148

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 56.2 bits (137), Expect = 5e-10
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 3/79 (3%)

Query: 190 EVNGEG---LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILME 246
           ++ G     L  A      + V+ LL  G D +  DK G+  LH A  +   ++A +L++
Sbjct: 37  DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 96

Query: 247 SGANMDCKNAQGESPLDCA 265
            GA ++  +    +PL  A
Sbjct: 97  HGAVVNVADLWKFTPLHEA 115

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 38.5 bits (91), Expect = 7e-04
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGA 249
           A   G     K LL  G D    ++ G + L L      TDI  +L    A
Sbjct: 115 AAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGDAA 164

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 60.7 bits (148), Expect = 5e-11
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 5/80 (6%)

Query: 190 EVNGEG---LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILME 246
           +V  E       A +  D  A+ +LL E  D +  D+ G + L   A         +L E
Sbjct: 40  DVVSEYETPWWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAE 98

Query: 247 SGANMDCKNAQ-GESPLDCA 265
           +GA++D ++ + G + L  A
Sbjct: 99  AGADLDHRDMRGGLTALHMA 118

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 58.8 bits (143), Expect = 2e-10
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCD-KQGMSLLHLAALFNRTDIAFILMESGANMDCK 254
           L      G    V+ L   G D +  D + G++ LH+AA + R ++   L+E GA+++ +
Sbjct: 81  LLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVE 140

Query: 255 NAQGESPLDCA 265
           + +G + L+ A
Sbjct: 141 DERGLTALELA 151

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 54.1 bits (131), Expect = 7e-09
 Identities = 13/57 (22%), Positives = 23/57 (40%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           A        V+ L+  G D    D++G++ L LA    +T      M+ G  +  + 
Sbjct: 118 AAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK 174

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 7/77 (9%)

Query: 192 NGEG---LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESG 248
            GEG        K+G + +         D      +  +    AA          L+E  
Sbjct: 12  AGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADEQALSQLLE-D 67

Query: 249 ANMDCKNAQGESPLDCA 265
            ++D  +  G + L   
Sbjct: 68  RDVDAVDENGRTALLFV 84

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 61.4 bits (150), Expect = 5e-11
 Identities = 4/67 (5%), Positives = 15/67 (22%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A        ++ L  +  +       G              +  + +   A +  ++   
Sbjct: 297 AADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSR 356

Query: 259 ESPLDCA 265
                 +
Sbjct: 357 ARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 59.9 bits (146), Expect = 1e-10
 Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 5/75 (6%)

Query: 196 LRDAIKNGDAAAVKKLL-----SEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGAN 250
           L  A++  +  A+  ++        +  ++ +KQG S LH A L N  D+A   +E G +
Sbjct: 177 LMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGID 236

Query: 251 MDCKNAQGESPLDCA 265
           ++ ++ +   PL  +
Sbjct: 237 VNMEDNEHTVPLYLS 251

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 58.3 bits (142), Expect = 6e-10
 Identities = 9/80 (11%), Positives = 22/80 (27%), Gaps = 13/80 (16%)

Query: 199 AIKNGDAAAVKKLLSE-------------GVDANFCDKQGMSLLHLAALFNRTDIAFILM 245
           +++       K+LL +             G          +  +  AA  ++ ++  +L 
Sbjct: 251 SVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQ 310

Query: 246 ESGANMDCKNAQGESPLDCA 265
           E    +      G       
Sbjct: 311 EKLDEVVRSLNTGAGGAVKR 330

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 56.4 bits (137), Expect = 2e-09
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A + G    V++L+  GV     ++ G + LHLA  F   D A  L   G      +  G
Sbjct: 27  AARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWH--G 84

Query: 259 ESPLDCA 265
           + P+  A
Sbjct: 85  QKPIHLA 91

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 54.9 bits (133), Expect = 8e-09
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 208 VKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMES-----GANMDCKNAQGESPL 262
           +K L+  G      DK   + L  A  F   +   ++M++        +D  N QG S L
Sbjct: 156 IKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHL 215

Query: 263 DCA 265
             A
Sbjct: 216 HWA 218

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 53.7 bits (130), Expect = 2e-08
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 214 EGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 265
             ++    D + M  +H+AA   +TD    L+E+G +   +N  G + L  A
Sbjct: 9   PKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLA 60

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 51.4 bits (124), Expect = 1e-07
 Identities = 9/62 (14%), Positives = 20/62 (32%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           AI         + +  G+D N  D +    L+L+       +   L++       +    
Sbjct: 218 AILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPY 277

Query: 259 ES 260
            +
Sbjct: 278 HN 279

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 50.6 bits (122), Expect = 2e-07
 Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 23/93 (24%)

Query: 196 LRDAIKNGDAAAVKKLLSEG---------------------VDANFCDKQGMSLLHLAAL 234
           +  A+       V  L+                        + ++    +G + LH    
Sbjct: 88  IHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVG 147

Query: 235 F--NRTDIAFILMESGANMDCKNAQGESPLDCA 265
                 ++  IL++ GA+   K+   E+PL  A
Sbjct: 148 LGPEYLEMIKILVQLGASPTAKDKADETPLMRA 180

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 50.6 bits (122), Expect = 2e-07
 Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 8/92 (8%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L  A K G     K L S G   +     G   +HLA + N+TD+   L+E         
Sbjct: 57  LHLACKFGCVDTAKYLASVGEVHS--LWHGQKPIHLAVMANKTDLVVALVEGAKE----- 109

Query: 256 AQGESPLDCAPVTLQYKMRQKMEEDKNNVGST 287
            +G+ P        + ++ +     K+  G T
Sbjct: 110 -RGQMPESLLNECDEREVNEIGSHVKHCKGQT 140

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 58.9 bits (144), Expect = 5e-11
 Identities = 24/70 (34%), Positives = 41/70 (58%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           LR A   G    V+ LL  G D N  D +G + LHLAA+F   +I  +L+++GA+++ ++
Sbjct: 84  LRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQD 143

Query: 256 AQGESPLDCA 265
             G++  D +
Sbjct: 144 KFGKTAFDIS 153

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 57.4 bits (140), Expect = 2e-10
 Identities = 23/70 (32%), Positives = 39/70 (55%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L +A + G    V+ L++ G D N  D  G + LHLAA     +I  +L+++GA+++  +
Sbjct: 18  LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD 77

Query: 256 AQGESPLDCA 265
             G +PL  A
Sbjct: 78  HAGMTPLRLA 87

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 55.8 bits (136), Expect = 7e-10
 Identities = 27/70 (38%), Positives = 40/70 (57%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L  A  NG    V+ LL  G D N  D  GM+ L LAALF   +I  +L+++GA+++  +
Sbjct: 51  LHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAND 110

Query: 256 AQGESPLDCA 265
            +G +PL  A
Sbjct: 111 MEGHTPLHLA 120

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 39.3 bits (93), Expect = 5e-04
 Identities = 16/51 (31%), Positives = 22/51 (43%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILME 246
           L  A   G    V+ LL  G D N  DK G +   ++      D+A IL +
Sbjct: 117 LHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 57.2 bits (139), Expect = 6e-11
 Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 3/79 (3%)

Query: 190 EVNGEG---LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILME 246
            +  +    L +A + G    V+ L++ G D    DK G + LHLAA     ++  +L+E
Sbjct: 19  HMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE 78

Query: 247 SGANMDCKNAQGESPLDCA 265
           +GA++  ++  G++  D +
Sbjct: 79  AGADVXAQDKFGKTAFDIS 97

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 53.7 bits (130), Expect = 1e-09
 Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 3/67 (4%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
              +        L+  G             L  AA   + D   ILM +GA++  K+  G
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57

Query: 259 ESPLDCA 265
            +PL  A
Sbjct: 58  STPLHLA 64

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 59.8 bits (146), Expect = 1e-10
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           AI + +   V  LL+ G   N  +      LH AA    T I  IL+ SG +    + +G
Sbjct: 38  AIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKG 95

Query: 259 ESPLDCA 265
            + L  A
Sbjct: 96  NTALYYA 102

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 56.8 bits (138), Expect = 1e-09
 Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 1/68 (1%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A    D   VK LL  G+D +  D +G + L+ A          + ++    +      G
Sbjct: 69  AATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTG 128

Query: 259 -ESPLDCA 265
            ++    A
Sbjct: 129 WKTSFYHA 136

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 54.8 bits (133), Expect = 6e-09
 Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A+   D + V   LSE     F     +S +H+       D+  +L++   + +  N+  
Sbjct: 136 AVMLNDVSIVSYFLSEIPS-TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLL 194

Query: 259 ESPL 262
             P 
Sbjct: 195 FIPD 198

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 54.1 bits (131), Expect = 9e-09
 Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 3/67 (4%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
            I    +  +K  LS   D    D  G S  + A   N   +   L+ +GA  +      
Sbjct: 6   RINTWKSKQLKSFLS-SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--N 62

Query: 259 ESPLDCA 265
           E PL  A
Sbjct: 63  EFPLHQA 69

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 50.6 bits (122), Expect = 1e-07
 Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 2/68 (2%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQG-MSLLHLAALFNRTDIAFILMESGANMDCKNAQ 257
           A+ +G+   VK  + +     F  K G  +  + A + N   I    +    +     A 
Sbjct: 102 AVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS-TFDLAI 160

Query: 258 GESPLDCA 265
             S +   
Sbjct: 161 LLSCIHIT 168

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 1/58 (1%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMS-LLHLAALFNRTDIAFILMESGANMDCKN 255
            IKNG    +  LL      N  +       + LA      ++   L +   N+   N
Sbjct: 168 TIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSAN 225

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 47.1 bits (113), Expect = 2e-06
 Identities = 10/67 (14%), Positives = 24/67 (35%), Gaps = 7/67 (10%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           ++ AI N D   ++ L    ++         S      L +  +IA +++E        +
Sbjct: 199 IKLAIDNKDIEMLQALFKYDINIY-------SANLENVLLDDAEIAKMIIEKHVEYKSDS 251

Query: 256 AQGESPL 262
              +  +
Sbjct: 252 YTKDLDI 258

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 58.6 bits (143), Expect = 1e-10
 Identities = 24/67 (35%), Positives = 42/67 (62%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A+KN      +KLLS+G + N  D  G + L  + +F  +++++ L+E GAN++ +N +G
Sbjct: 75  AVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEG 134

Query: 259 ESPLDCA 265
           E+PL  A
Sbjct: 135 ETPLIVA 141

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 58.6 bits (143), Expect = 1e-10
 Identities = 18/70 (25%), Positives = 35/70 (50%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L  +I  G +     LL  G + N  + +G + L +A+ + R++I   L+E GA++  ++
Sbjct: 105 LMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARD 164

Query: 256 AQGESPLDCA 265
             G +    A
Sbjct: 165 LTGLTAEASA 174

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 57.0 bits (139), Expect = 4e-10
 Identities = 20/67 (29%), Positives = 32/67 (47%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A   G   A+ KL+         D +G + L  A   NR  IA  L+  G+N++ K+  G
Sbjct: 42  ACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSG 101

Query: 259 ESPLDCA 265
           ++PL  +
Sbjct: 102 KTPLMWS 108

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 53.5 bits (130), Expect = 6e-09
 Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 5/70 (7%)

Query: 201 KNGDAA---AVKKLLSEGVDA--NFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           KNG+       +K +++ +D   N+ D    + L +A +    +    L+E+   ++ K+
Sbjct: 6   KNGEIVEKIKDEKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKD 65

Query: 256 AQGESPLDCA 265
            +G + L  A
Sbjct: 66  IEGSTALIWA 75

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 39.3 bits (93), Expect = 5e-04
 Identities = 17/49 (34%), Positives = 24/49 (48%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFIL 244
           L  A K G +  VKKLL  G D +  D  G++    A +F R ++  I 
Sbjct: 138 LIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIF 186

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 57.9 bits (141), Expect = 1e-10
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 202 NGDAAAVKKLLSEGVDANFCDKQGMSL-LHLAALFNRTDIAFILMESGANMDCKNAQGES 260
            G A   + LL  G + N  D   ++  +H AA     D   +L  +GA +D ++A G  
Sbjct: 54  MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRL 113

Query: 261 PLDCA 265
           P+D A
Sbjct: 114 PVDLA 118

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 54.0 bits (131), Expect = 2e-09
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 2/71 (2%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L  A   G    V+ LL  G + N  +  G   + +        +A +L+  GA  +C +
Sbjct: 16  LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCAD 74

Query: 256 AQGE-SPLDCA 265
                 P+  A
Sbjct: 75  PATLTRPVHDA 85

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 54.0 bits (131), Expect = 3e-09
 Identities = 13/68 (19%), Positives = 21/68 (30%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           + DA + G    +  L   G   +  D  G   + LA      D+A  L  +       N
Sbjct: 82  VHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSN 141

Query: 256 AQGESPLD 263
                  +
Sbjct: 142 HARIDAAE 149

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 49.0 bits (118), Expect = 1e-07
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 212 LSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 265
           +     ++   +     L  AA   R +    L+E+GAN +  N+ G  P+   
Sbjct: 1   MEPAAGSS--MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVM 52

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 57.1 bits (139), Expect = 1e-10
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 202 NGDAAAVKKLLSEGVDANFCDKQGMSL-LHLAALFNRTDIAFILMESGANMDCKNAQGES 260
            G A   + LL  G + N  D   ++  +H AA     D   +L  +GA +D  +A G  
Sbjct: 54  MGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRL 113

Query: 261 PLDCA 265
           P+D A
Sbjct: 114 PVDLA 118

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 53.2 bits (129), Expect = 3e-09
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L  A   G    V++LL  G D N  ++ G   + +        +A +L+  GA  +C +
Sbjct: 16  LATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCAD 74

Query: 256 AQGE-SPLDCA 265
                 P+  A
Sbjct: 75  PATLTRPVHDA 85

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 51.3 bits (124), Expect = 2e-08
 Identities = 10/51 (19%), Positives = 19/51 (37%)

Query: 215 GVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 265
               +       + L  AA   + +    L+E+GA+ +  N  G  P+   
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVM 52

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 48.2 bits (116), Expect = 2e-07
 Identities = 14/55 (25%), Positives = 21/55 (38%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGAN 250
           + DA + G    +  L   G   + CD  G   + LA      DIA  L  +  +
Sbjct: 82  VHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 59.8 bits (146), Expect = 1e-10
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQ-GMSLLHLAALFNRTDIAFILMESGANMDCK 254
           L  A++N D   V++LL  G + NF +++ G + LH A   +R DI  +L+  GA+   +
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 68

Query: 255 NAQGESPLDCA 265
              G +P   A
Sbjct: 69  KKNGATPFLLA 79

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 59.4 bits (145), Expect = 2e-10
 Identities = 15/67 (22%), Positives = 28/67 (41%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A++      V+ LL  G D     K G +   LAA+     +  + +  GA+++  +  G
Sbjct: 46  AVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYG 105

Query: 259 ESPLDCA 265
            +    A
Sbjct: 106 FTAFMEA 112

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 55.9 bits (136), Expect = 3e-09
 Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 10/80 (12%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
              A   G    +K  LS+G D N CD  G +    AA++ +      L + GAN++ + 
Sbjct: 76  FLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRR 135

Query: 256 ----------AQGESPLDCA 265
                       G + L  A
Sbjct: 136 KTKEDQERLRKGGATALMDA 155

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 55.2 bits (134), Expect = 4e-09
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 196 LRDAIKNGDAAAVKKLLSE-GVDANFCDKQGMSLLHLAALFNRTD----IAFILMESGAN 250
           L DA + G    +K LL E G D N CD  G + L  A L +       I  +L++ GA+
Sbjct: 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD 211

Query: 251 MDCKNAQGESPLDCA 265
           ++ +  +G++PL  A
Sbjct: 212 VNVRGERGKTPLILA 226

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 54.0 bits (131), Expect = 9e-09
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 201 KNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMES-GANMDCKNAQGE 259
            +   A    LL  G D N   ++G + L LA       +   L+E     ++  ++ G+
Sbjct: 195 DSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGK 254

Query: 260 SPLDCA 265
           + L  A
Sbjct: 255 TALLLA 260

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 54.0 bits (131), Expect = 1e-08
 Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 11/81 (13%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDK----------QGMSLLHLAALFNRTDIA-FIL 244
             +A   G   A+K L   G + N   K           G + L  AA     ++   +L
Sbjct: 109 FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL 168

Query: 245 MESGANMDCKNAQGESPLDCA 265
            E GA+++  +  G + L  A
Sbjct: 169 DEMGADVNACDNMGRNALIHA 189

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 52.9 bits (128), Expect = 2e-08
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 199 AIKNGDAAAVKKLLS-EGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           A++      V++LL  E ++ N  D  G + L LA       IA +L + GA+ DC +
Sbjct: 226 AVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 40.9 bits (97), Expect = 2e-04
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 222 DKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQ-GESPLDCA 265
             +   LL  A      D+   L+E GAN++ +  + G +PL  A
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNA 46

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 57.0 bits (139), Expect = 2e-10
 Identities = 23/70 (32%), Positives = 38/70 (54%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L  A  +G    V+ LL  G D N  D  G + LHLAA     +IA +L++ GA+++ ++
Sbjct: 51  LYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQD 110

Query: 256 AQGESPLDCA 265
             G++  D +
Sbjct: 111 KFGKTAFDIS 120

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 56.2 bits (137), Expect = 3e-10
 Identities = 21/67 (31%), Positives = 39/67 (58%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A + G    V+ L++ G D N  D+ G++ L+LA      +I  +L+++GA+++  +A G
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80

Query: 259 ESPLDCA 265
            +PL  A
Sbjct: 81  FTPLHLA 87

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 40.1 bits (95), Expect = 1e-04
 Identities = 14/37 (37%), Positives = 21/37 (56%)

Query: 229 LHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 265
           L  AA   + D   ILM +GA+++ K+  G +PL  A
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLA 54

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 38.9 bits (92), Expect = 4e-04
 Identities = 15/51 (29%), Positives = 21/51 (41%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILME 246
           L  A   G     + LL  G D N  DK G +   ++      D+A IL +
Sbjct: 84  LHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 59.7 bits (144), Expect = 2e-10
 Identities = 24/149 (16%), Positives = 50/149 (33%), Gaps = 5/149 (3%)

Query: 121 EAPAPAASTETRPPQMKSSSTTAGQSNPKPKKTENTARSRGST--SNSNFSSIFN-PGQV 177
             P    + +       SS     ++ P P   +N  + +         F  I   P  +
Sbjct: 24  AGPIITFTHDL-TSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSL 82

Query: 178 TNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFC-DKQGMSLLHLAALFN 236
            N ++++       N +    +  +          +  ++ N   D+ G + LH      
Sbjct: 83  NNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIA 142

Query: 237 RTDIAFILMESGANMDCKNAQGESPLDCA 265
             ++   L++ G+N    +  GES L  A
Sbjct: 143 NLELVKHLVKHGSNRLYGDNMGESCLVKA 171

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 55.0 bits (132), Expect = 6e-09
 Identities = 15/67 (22%), Positives = 24/67 (35%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
             K+     +          N  D  G + L++AA      I   L++ GA+    N  G
Sbjct: 257 ERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSG 316

Query: 259 ESPLDCA 265
             P+D  
Sbjct: 317 LRPVDFG 323

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 57.8 bits (140), Expect = 2e-10
 Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 7/70 (10%)

Query: 203 GDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIA-------FILMESGANMDCKN 255
           G     K  L +G D     K    ++         D          I  +SG  +  K+
Sbjct: 92  GTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKD 151

Query: 256 AQGESPLDCA 265
             G + L+  
Sbjct: 152 KWGLTALEFV 161

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 57.0 bits (138), Expect = 4e-10
 Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 6/76 (7%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAF------ILMESGA 249
           LR+            L+++G D     K+G +L          DI        I +E GA
Sbjct: 46  LRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGA 105

Query: 250 NMDCKNAQGESPLDCA 265
           ++       +  +   
Sbjct: 106 DITALYKPYKIVVFKN 121

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 7/75 (9%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFN-----RTDIAFILMESGAN 250
           +  A   G      +L  +G +    +    S +    L N     R  I+  L+  GA+
Sbjct: 10  VSAAAMLGTYEDFLELFEKGYEDK--ESVLKSNILYDVLRNNNDEARYKISMFLINKGAD 67

Query: 251 MDCKNAQGESPLDCA 265
           +  +  +G +     
Sbjct: 68  IKSRTKEGTTLFFPL 82

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 8/67 (11%), Positives = 18/67 (26%), Gaps = 7/67 (10%)

Query: 196 LRDAIKNGDAAAVKK-------LLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESG 248
           +   I N      +            G+     DK G++ L       +     ++ +  
Sbjct: 118 VFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYI 177

Query: 249 ANMDCKN 255
              + K 
Sbjct: 178 KKYNLKE 184

>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1 Length = 88

 Score = 55.6 bits (134), Expect = 2e-10
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 22 HHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTGKDN 68
          + C+ CGR  C+   S    +P+ G  T  +VC  C    +R   DN
Sbjct: 26 YGCKNCGRAFCNGCLSFSALVPRAGN-TQQKVCKQCHTILTRGSSDN 71

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 199 AIKNGDAAAVKKLLSE-GVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQ 257
           A +  +   VK L+ E G + +  D+ G + + LAA   R ++   L++ GA+++  +A 
Sbjct: 286 AAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDAT 345

Query: 258 GESPLDCA 265
             +    A
Sbjct: 346 DHTARQLA 353

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 58.4 bits (142), Expect = 6e-10
 Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 3/70 (4%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFIL---MESGANMDCKN 255
           A+       V  L+  G D    +K   S LH AA      +   +    +   +++  +
Sbjct: 173 AVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELD 232

Query: 256 AQGESPLDCA 265
             G + L   
Sbjct: 233 RNGMTALMIV 242

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 18/58 (31%), Positives = 26/58 (44%)

Query: 208 VKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 265
            K+ ++ G D N  D    + L LA L  R  +   LM++GA+    N    S L  A
Sbjct: 149 AKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQA 206

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 12/79 (15%)

Query: 199 AIKNG---DAAAVKKLLSEGVDANFC--------DKQGMSLLHLAALFNRTDIA-FILME 246
              N      A+ K L+ +G   ++           +G + LH AA  +   I  +++ E
Sbjct: 242 VAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGE 301

Query: 247 SGANMDCKNAQGESPLDCA 265
            G+N D ++  G++P+  A
Sbjct: 302 KGSNKDKQDEDGKTPIMLA 320

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 49.2 bits (118), Expect = 6e-07
 Identities = 11/88 (12%), Positives = 21/88 (23%), Gaps = 3/88 (3%)

Query: 179 NGATDKPRMEYEVNGE-GLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR 237
           +G   + R E +            NG+        +        + +    LH  A    
Sbjct: 47  DGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEA-AGS 105

Query: 238 TDIAFILMESGANMDCKNAQGESPLDCA 265
             I   +     N+        + L   
Sbjct: 106 YAITEPITRESVNIIDPR-HNRTVLHWI 132

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 11/54 (20%), Positives = 17/54 (31%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 252
           A + G    V  L+ +G      D    +   LA   N  +I  I        +
Sbjct: 320 AAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPERE 373

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 9/72 (12%)

Query: 202 NGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFIL--------MESGANMDC 253
            G  A  + +  E V+     +   ++LH  A  +  + +  L        + +GA+++ 
Sbjct: 103 AGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNA 161

Query: 254 KNAQGESPLDCA 265
            +    +PL  A
Sbjct: 162 MDCDENTPLMLA 173

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 14/84 (16%)

Query: 196 LRDAIKNGDAAAVKKLLS---EGVDANFCDKQGMSLLHLAALFNRTD---IAFILMESGA 249
           L  A  N D   +  +L+      D    D+ GM+ L + A     D    A +L+E GA
Sbjct: 203 LHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGA 262

Query: 250 NMDC--------KNAQGESPLDCA 265
            +D         +  +G + L  A
Sbjct: 263 KVDYDGAARKDSEKYKGRTALHYA 286

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 8/89 (8%), Positives = 16/89 (17%), Gaps = 2/89 (2%)

Query: 179 NGATDKPRMEYEVNGEGLRDAIKNGDAA--AVKKLLSEGVDANFCDKQGMSLLHLAALFN 236
           N +   P ME E        +I +   +              N      +          
Sbjct: 13  NASVWMPPMENEEKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNG 72

Query: 237 RTDIAFILMESGANMDCKNAQGESPLDCA 265
              +      +         +    L   
Sbjct: 73  NDFLGDFNHTNLQIPTEPEPESPIKLHTE 101

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 55.9 bits (136), Expect = 6e-10
 Identities = 18/65 (27%), Positives = 34/65 (52%)

Query: 201 KNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGES 260
           K G+    ++LL  G + +  D+ G +++H AA     D    L+E  A+++ ++ +G  
Sbjct: 46  KLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNL 105

Query: 261 PLDCA 265
           PL  A
Sbjct: 106 PLHLA 110

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 55.9 bits (136), Expect = 6e-10
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L  A   GD   +  LL   V+ N  +  G + L +       +IA  L+  GAN D K+
Sbjct: 9   LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKD 67

Query: 256 AQGESPLDCA 265
             G + +  A
Sbjct: 68  RTGFAVIHDA 77

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 54.7 bits (133), Expect = 1e-09
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGA-NMDCK 254
           + DA + G    ++ LL    D N  D +G   LHLAA      +   L++  A N+  +
Sbjct: 74  IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133

Query: 255 NAQGESPLDCA 265
           N +G++  D A
Sbjct: 134 NHKGDTACDLA 144

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 41.6 bits (99), Expect = 6e-05
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 196 LRDAIKNGDAAAVKKLLSEG-VDANFCDKQGMSLLHLAALFNRTDIAFILMESGA 249
           L  A K G    V+ L+     +    + +G +   LA L+ R ++  ++  +GA
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 56.7 bits (138), Expect = 9e-10
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 199 AIKNGDAAAVKKLLS--EGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNA 256
           A   G+   VK L       D N    QG++ LHLA      +++  L+E+GA++  K+ 
Sbjct: 79  ACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK 138

Query: 257 QGESPLDCA 265
             + PL  A
Sbjct: 139 FNQIPLHRA 147

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 55.1 bits (134), Expect = 2e-09
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 196 LRDAIKNGDAAAVKKLLSEGV-DANFCDKQGMSLLHLAALFNRTDIAFILMES-GANMDC 253
           L  A   G    ++ L   G    N+ DKQG + L  A      D A +L+E  GA  D 
Sbjct: 144 LHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL 203

Query: 254 KNAQGESPLDCA 265
            + +G    D A
Sbjct: 204 VDNKGAKAEDVA 215

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 53.6 bits (130), Expect = 1e-08
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 199 AIKNGDAAAVKKLL-SEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANM---DCK 254
           A    +   V++LL S+       D+ G   LH +  F   +I   L+    N+   D  
Sbjct: 9   ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 68

Query: 255 NAQGESPLDCA 265
           +  G +P   A
Sbjct: 69  DDSGWTPFHIA 79

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 53.2 bits (129), Expect = 1e-08
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGAN-MDCKNAQ 257
           A+        + L+  G      DK     LH AA      +  +L   G + ++ ++ Q
Sbjct: 114 AVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQ 173

Query: 258 GESPLDCA 265
           G +PL  A
Sbjct: 174 GWTPLFHA 181

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 52.1 bits (126), Expect = 3e-08
 Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 5/72 (6%)

Query: 199 AIKNGDAAAVKKLLSEGVDAN---FCDKQGMSLLHLAALFNRTDIAFILME--SGANMDC 253
           ++          LLS+  + N   + D  G +  H+A      ++   L +     +++ 
Sbjct: 43  SVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNK 102

Query: 254 KNAQGESPLDCA 265
              QG + L  A
Sbjct: 103 ITNQGVTCLHLA 114

>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 84

 Score = 53.3 bits (128), Expect = 1e-09
 Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 6/53 (11%)

Query: 22 HHCRCCGRTLCHEHSSDQMTLPQFGIH------TNVRVCADCFNSSSRTGKDN 68
            C  CG + C    S ++     G          V VCA C  + S++G  +
Sbjct: 31 RSCSNCGNSFCSRCCSFKVPKSSMGATAPEAQRETVFVCASCNQTLSKSGPSS 83

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 56.4 bits (137), Expect = 1e-09
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQ-GMSLLHLAALFNRTDIAFILMESGANMDCKNAQ 257
           A  +G    V+ L+S G D N  +   G + LHLA      D+  +L++ GA+++    Q
Sbjct: 124 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ 183

Query: 258 GESPLDCA 265
           G SP    
Sbjct: 184 GYSPYQLT 191

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 56.0 bits (136), Expect = 1e-09
 Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 199 AIKNGDAAA----VKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCK 254
           AI + + A     ++++  +    NF +    + LHLA + N+ +IA  L+ +G + + +
Sbjct: 15  AIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR 74

Query: 255 NAQGESPLDCA 265
           + +G +PL  A
Sbjct: 75  DFRGNTPLHLA 85

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 56.0 bits (136), Expect = 2e-09
 Identities = 15/67 (22%), Positives = 19/67 (28%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 258
           A+   +   V  LL  G D N    QG S   L      T I   L +          + 
Sbjct: 158 AVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPES 217

Query: 259 ESPLDCA 265
           E      
Sbjct: 218 EDEESYD 224

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 54.1 bits (131), Expect = 7e-09
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 7/74 (9%)

Query: 199 AIKNGDAAAVKKLLSEGVDA------NFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 252
           A + G  A+V  L                +  G + LHLA++     I  +L+  GA+++
Sbjct: 85  ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN 144

Query: 253 CK-NAQGESPLDCA 265
            +    G + L  A
Sbjct: 145 AQEPCNGRTALHLA 158

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 53.7 bits (130), Expect = 1e-08
 Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 6/73 (8%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGAN------MD 252
           A+        + LL  G D    D +G + LHLA          +L +S         + 
Sbjct: 52  AVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILK 111

Query: 253 CKNAQGESPLDCA 265
             N  G + L  A
Sbjct: 112 ATNYNGHTCLHLA 124

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 222 DKQGMSLLHLAALFNRTDIAF----ILMESGANMDCKNAQGESPLDCA 265
            + G S LHLA +     +       +    A ++ +N   ++PL  A
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA 52

>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens} Length = 90

 Score = 53.3 bits (128), Expect = 1e-09
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 22 HHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTGKDNLQVSSDGVN 77
          HHCR CG+  C    + +  L         RVC  C+ + S+       +S  G N
Sbjct: 37 HHCRACGKVFCGVCCNRKCKLQYLE--KEARVCVVCYETISKAQAFERMMSPTGSN 90

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 56.7 bits (136), Expect = 2e-09
 Identities = 33/166 (19%), Positives = 54/166 (32%), Gaps = 5/166 (3%)

Query: 100 VKRHPVSSVLECKCGMPLCICEAPAPAASTETRPPQMKSSSTTAGQSNPKPKKTENTARS 159
           + + P         G P      P        RP      S     S             
Sbjct: 148 LTKLPEIRGRRGGRGRPR---GQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLF 204

Query: 160 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDAN 219
           R S    +  ++ +     +GA        + N   L  A       A + LL  G + N
Sbjct: 205 RASGHPPSLPTMADALA--HGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVN 262

Query: 220 FCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 265
             D  G   LH A +   T +A + ++ GA++  ++++G  PL  A
Sbjct: 263 QADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 6/73 (8%)

Query: 199 AIKNGDAAAVKKLL-SEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGAN-----MD 252
           A K  D  A+ KLL  EG + +     G + LH+AAL++  + A +LME+        M 
Sbjct: 10  AAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMT 69

Query: 253 CKNAQGESPLDCA 265
            +  +G++ L  A
Sbjct: 70  SELYEGQTALHIA 82

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 54.1 bits (131), Expect = 7e-09
 Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 13/83 (15%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDK-------------QGMSLLHLAALFNRTDIAF 242
           L  A+ N +   V+ LL+ G   +                  G   L  AA     +I  
Sbjct: 79  LHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVR 138

Query: 243 ILMESGANMDCKNAQGESPLDCA 265
           +L+E GA++  +++ G + L   
Sbjct: 139 LLIEHGADIRAQDSLGNTVLHIL 161

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 10/80 (12%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAF----ILMESGANM 251
           L  A   G    V+ L+  G D    D  G ++LH+  L      A     +L+      
Sbjct: 125 LSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD 184

Query: 252 DCK------NAQGESPLDCA 265
             K      N QG +P   A
Sbjct: 185 HLKSLELVPNNQGLTPFKLA 204

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 45.7 bits (109), Expect = 4e-06
 Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 5/62 (8%)

Query: 199 AIKNGDAAAVKKLLSEGVD-----ANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDC 253
           A    +  A   L+    +           +G + LH+A +    ++   L+  GA++  
Sbjct: 44  AALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSA 103

Query: 254 KN 255
           + 
Sbjct: 104 RA 105

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 55.4 bits (133), Expect = 4e-09
 Identities = 17/55 (30%), Positives = 28/55 (50%)

Query: 211 LLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 265
           ++  G   +     G + LH AAL+N+ D   +L++  A +   N  GE+ LD A
Sbjct: 212 IIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 266

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 54.2 bits (130), Expect = 9e-09
 Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 3/73 (4%)

Query: 196 LRDAIKNGDAAAVK---KLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 252
           L  A+++ D  ++     L+    + +    +G + LH   L +  +   +L+   A+++
Sbjct: 173 LHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIE 232

Query: 253 CKNAQGESPLDCA 265
             N  GE+PLD A
Sbjct: 233 IANESGETPLDIA 245

>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A Length = 82

 Score = 49.4 bits (118), Expect = 2e-08
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 22 HHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFN 59
          HHCR CG   C+  SS+++ LP +     VRVC  C  
Sbjct: 36 HHCRNCGHIFCNTCSSNELALPSYP--KPVRVCDSCHT 71

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 52.1 bits (125), Expect = 4e-08
 Identities = 10/63 (15%), Positives = 23/63 (36%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L   + +G      +L          + QG++ L LAA   + +I   +++   +    +
Sbjct: 192 LVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAH 251

Query: 256 AQG 258
              
Sbjct: 252 HHH 254

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 16/83 (19%)

Query: 199 AIKNGDAAAVKKLLSEGVDAN-------------FCDKQGMSLLHLAALFNRTDIAFILM 245
           AI+      VK L+  G D +              C   G   L LAA   + D+   L+
Sbjct: 97  AIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLL 156

Query: 246 ESG---ANMDCKNAQGESPLDCA 265
           E+    A+++  ++ G + L   
Sbjct: 157 ENPHQPASLEATDSLGNTVLHAL 179

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 11/79 (13%)

Query: 201 KNGDAAAVKKLLSEGVDANFC-----------DKQGMSLLHLAALFNRTDIAFILMESGA 249
           ++G  A +  LL    D+                QG S LH+A          +L+E+GA
Sbjct: 55  QDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGA 114

Query: 250 NMDCKNAQGESPLDCAPVT 268
           ++  +              
Sbjct: 115 DVHLRACGRFFQKHQGTCF 133

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 19/108 (17%), Positives = 27/108 (25%), Gaps = 20/108 (18%)

Query: 178 TNGATDKPRMEYEVNGEG-LRDAIKNGDAAAVKKLLSEGV---DANFCDKQGMSLLHLAA 233
                 K +      GE  L  A        V  LL            D  G ++LH   
Sbjct: 121 CGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALV 180

Query: 234 LFNRT----------------DIAFILMESGANMDCKNAQGESPLDCA 265
           +                     +   L  +    +  N QG +PL  A
Sbjct: 181 MIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLA 228

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 16/96 (16%), Positives = 24/96 (25%), Gaps = 22/96 (22%)

Query: 192 NGEGLRDAIKNGDAAAVKKLLSE--------GVDANFCDKQGMSLLHLAALF---NRTDI 240
           + + L   +  G    +  LL             A      G + L  A L         
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 241 AFILMESG-----------ANMDCKNAQGESPLDCA 265
              L++             A    +  QG S L  A
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIA 97

>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A Length = 125

 Score = 48.8 bits (116), Expect = 1e-07
 Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 22  HHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFN 59
           HHCR CG   C E S+     P       VRVC  CFN
Sbjct: 86  HHCRQCGNIFCAECSAKNALTPSSK--KPVRVCDACFN 121

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 18/63 (28%), Positives = 29/63 (46%)

Query: 203 GDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPL 262
                V  ++  G   +     G + LH AAL+N+ D   +L++  A +   N  GE+ L
Sbjct: 185 ASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETAL 244

Query: 263 DCA 265
           D A
Sbjct: 245 DIA 247

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 43.3 bits (102), Expect = 6e-05
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 9/79 (11%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDAN------FCDKQGMSLLHLAALF-NRTDIAFI--LME 246
           L  AI N D  +V +  + G D                +LHLA    N+  +  +  +++
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195

Query: 247 SGANMDCKNAQGESPLDCA 265
           +G ++D K A G + L  A
Sbjct: 196 NGGHLDAKAADGNTALHYA 214

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 17/84 (20%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSL--------------LHLAALFNRTDIAFIL 244
           AI+  +   V  L+  G D                         L LAA  N+  I   L
Sbjct: 108 AIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFL 167

Query: 245 MESG---ANMDCKNAQGESPLDCA 265
           +++    A++  +++ G + L   
Sbjct: 168 LQNSWQPADISARDSVGNTVLHAL 191

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 9/70 (12%), Positives = 22/70 (31%), Gaps = 7/70 (10%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
              ++ N       KL          +++G++ L LAA   +  +   +++   +     
Sbjct: 204 FVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH----- 258

Query: 256 AQGESPLDCA 265
                    A
Sbjct: 259 --EPECRHAA 266

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 11/67 (16%)

Query: 200 IKNGDAAAVKKLLSEG---------VDANFCDK--QGMSLLHLAALFNRTDIAFILMESG 248
           + NG    +  LL            V+A++ D   +G + LH+A       +  +L+E+G
Sbjct: 65  LHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENG 124

Query: 249 ANMDCKN 255
           A++    
Sbjct: 125 ADVQAAA 131

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 48.6 bits (116), Expect = 6e-07
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 17/84 (20%)

Query: 199 AIKNGDAAAVKKLLSEGVDAN--------------FCDKQGMSLLHLAALFNRTDIAFIL 244
           AI+      V+ L+ +G D +                   G   L LAA  N+  I   L
Sbjct: 100 AIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL 159

Query: 245 MESG---ANMDCKNAQGESPLDCA 265
            E+G   A++  ++++G + L   
Sbjct: 160 TENGHKQADLRRQDSRGNTVLHAL 183

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 39.4 bits (92), Expect = 7e-04
 Identities = 8/60 (13%), Positives = 15/60 (25%), Gaps = 7/60 (11%)

Query: 198 DAIKNGDAAAVKKLLSEGVDAN-------FCDKQGMSLLHLAALFNRTDIAFILMESGAN 250
                        LL +              +  G+S L +AA   +  I   ++     
Sbjct: 191 RENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA 250

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 39.4 bits (92), Expect = 8e-04
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 11/67 (16%)

Query: 200 IKNGDAAAVKKLLS---------EGVDANFCDK--QGMSLLHLAALFNRTDIAFILMESG 248
           +  G    +  LL          E +++ F D   +G + LH+A          +L+E G
Sbjct: 57  LSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKG 116

Query: 249 ANMDCKN 255
           A++  + 
Sbjct: 117 ADVHAQA 123

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 46.5 bits (110), Expect = 4e-06
 Identities = 11/72 (15%), Positives = 17/72 (23%), Gaps = 5/72 (6%)

Query: 199 AIKNGDA---AAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           A   G +     +  LL+          +      LAA      +   L E         
Sbjct: 99  AAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAM 158

Query: 256 --AQGESPLDCA 265
             A+       A
Sbjct: 159 IQAENYHAFRLA 170

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 43.8 bits (103), Expect = 4e-05
 Identities = 13/74 (17%), Positives = 18/74 (24%), Gaps = 4/74 (5%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQ--GMSLLHLAALFNRTDIAFILMESGANMDC 253
            R A +NG    + +L            Q        LAA      +   L E       
Sbjct: 132 FRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEAT 191

Query: 254 KN--AQGESPLDCA 265
               A+       A
Sbjct: 192 AMIQAENYYAFRWA 205

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 39.5 bits (92), Expect = 7e-04
 Identities = 16/89 (17%), Positives = 26/89 (29%), Gaps = 9/89 (10%)

Query: 179 NGATDKPRMEYEVNGE-GLRDAIKNGDAA---AVKKLLS-----EGVDANFCDKQGMSLL 229
           +G  D       + G   LR+ I+  D      ++ LLS                   LL
Sbjct: 264 DGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELL 323

Query: 230 HLAALFNRTDIAFILMESGANMDCKNAQG 258
            LA          +L+   + +    A  
Sbjct: 324 RLALRLGNQGACALLLSIPSVLALTKANN 352

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	290
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.94
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.94
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.92
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.91
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.9
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.9
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.9
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.9
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.9
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.9
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.89
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.89
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.89
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.89
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.89
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.89
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.89
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.89
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.89
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.89
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.89
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.89
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.88
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.88
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.88
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.88
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.88
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.87
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.87
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.87
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.87
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.87
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.87
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.87
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.87
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.87
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.87
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.86
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.86
2rfa_A	232	Transient receptor potential cation channel subfa	99.86
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.86
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.86
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.86
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.86
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.86
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.85
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.85
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.85
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.85
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.85
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.85
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.85
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.85
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.85
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.85
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.85
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.85
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.85
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.85
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.85
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.85
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.85
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.85
1x4u_A	84	Zinc finger, FYVE domain containing 27 isoform B;	99.85
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.85
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.85
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.84
2etb_A	256	Transient receptor potential cation channel subfam	99.84
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.84
2pnn_A	273	Transient receptor potential cation channel subfa	99.84
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.84
2rfa_A	232	Transient receptor potential cation channel subfa	99.84
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.84
1wfk_A	88	Zinc finger, FYVE domain containing 19; riken stru	99.84
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.84
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.84
2pnn_A	273	Transient receptor potential cation channel subfa	99.84
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.84
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.84
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.84
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.84
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.84
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.84
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.84
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.84
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.84
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.84
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.84
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.83
1z2q_A	84	LM5-1; membrane protein, FYVE domain, zinc-finger;	99.83
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.83
2etb_A	256	Transient receptor potential cation channel subfam	99.83
1vfy_A	73	Phosphatidylinositol-3-phosphate binding FYVE doma	99.83
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.83
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.83
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.83
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.83
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.82
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.82
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.82
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.81
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.81
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.81
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.81
2yw8_A	82	RUN and FYVE domain-containing protein 1; structur	99.81
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.8
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.8
3t7l_A	90	Zinc finger FYVE domain-containing protein 16; str	99.8
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.79
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.79
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.78
1joc_A	125	EEA1, early endosomal autoantigen 1; FYVE domain,	99.78
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.78
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.77
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.77
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	99.75
1dvp_A	220	HRS, hepatocyte growth factor-regulated tyrosine k	99.74
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.69
1y02_A	120	CARP2, FYVE-ring finger protein sakura; zinc-bindi	99.69
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.66
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.65
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.65
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.57
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.56
3mpx_A	434	FYVE, rhogef and PH domain-containing protein 5; s	99.53
2zet_C	153	Melanophilin; complex, GTP-binding protein, GTPase	95.19
1zbd_B	134	Rabphilin-3A; G protein, effector, RABCDR, synapti	95.16
1wfh_A	64	Zinc finger (AN1-like) family protein; ZF-AN1 doma	94.38
3ky9_A	587	Proto-oncogene VAV; calponin homology domain, DBL	93.96
1wfp_A	74	Zinc finger (AN1-like) family protein; ZF-AN1 doma	93.91
1wff_A	85	Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc	93.67
1wfl_A	74	Zinc finger protein 216; ZF-AN1 domain, zinc bindi	93.64
1z60_A	59	TFIIH basal transcription factor complex P44 subun	93.3
1wg2_A	64	Zinc finger (AN1-like) family protein; riken struc	92.14
2jrp_A	81	Putative cytoplasmic protein; two-zinc binding pro	91.27
2csz_A	76	Synaptotagmin-like protein 4; exophilin 2, granuph	89.39
1x4w_A	67	Hypothetical protein FLJ13222; ZF-AN1 domain, zinc	85.04
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	81.79

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.94  E-value=1.3e-26  Score=187.54  Aligned_cols=127  Identities=23%  Similarity=0.325  Sum_probs=91.9

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCcc--------------------------ccccchHHHHHHHcCCHHHHHHHHHC
Q 022927          161 GSTSNSNFSSIFNPGQVTNGATDKPRME--------------------------YEVNGEGLRDAIKNGDAAAVKKLLSE  214 (290)
Q Consensus       161 ~s~~~~~~~~Ll~~g~~~~~~~~~~~~~--------------------------~~~~~t~Lh~A~~~g~~~~v~~Ll~~  214 (290)
                      ..++.+.++.|++.|++++..+..+.++                          ...|.||||+|+..|+.+++++||++
T Consensus        13 ~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~   92 (169)
T 4gpm_A           13 ENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK   92 (169)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            3445555566666666665555444331                          12355688888888888888888888


Q ss_pred             CCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCC
Q 022927          215 GVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGST  287 (290)
Q Consensus       215 g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~  287 (290)
                      |+++|.+|.+|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..|+.+++++|+++||+++..
T Consensus        93 gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~~  165 (169)
T 4gpm_A           93 GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEHH  165 (169)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-------
T ss_pred             cCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCCC
Confidence            8888888888888888888888888888888888888888888888888888888888888888888888753

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.94  E-value=7.9e-27  Score=188.75  Aligned_cols=103  Identities=26%  Similarity=0.370  Sum_probs=99.0

Q ss_pred             ccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhh
Q 022927          187 MEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAP  266 (290)
Q Consensus       187 ~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~  266 (290)
                      .....|.||||+|+..++.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+++|.+|.+|+||||+|+
T Consensus        32 ~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~  111 (169)
T 4gpm_A           32 ASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAA  111 (169)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHH
Confidence            34567999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHhCCCCCCCCCC
Q 022927          267 VTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       267 ~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      ..|+.+++++|+++|||++.+|.
T Consensus       112 ~~g~~~~v~~Ll~~gad~~~~d~  134 (169)
T 4gpm_A          112 ENGHKEVVKLLISKGADVNTSDS  134 (169)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HcCCHHHHHHHHHcCCCccccCC
Confidence            99999999999999999998874

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.92  E-value=7.8e-25  Score=158.85  Aligned_cols=92  Identities=32%  Similarity=0.425  Sum_probs=89.4

Q ss_pred             cchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCH
Q 022927          192 NGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQY  271 (290)
Q Consensus       192 ~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~  271 (290)
                      |.||||+|+..|+.+++++|++.|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~   81 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL   81 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence            56799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCC
Q 022927          272 KMRQKMEEDKNN  283 (290)
Q Consensus       272 ~iv~~Ll~~GAd  283 (290)
                      +++++|+++||+
T Consensus        82 ~~~~~Ll~~ga~   93 (93)
T 1n0q_A           82 EVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             HHHHHHHHcCCC
Confidence            999999999986

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.91  E-value=6.6e-25  Score=176.67  Aligned_cols=129  Identities=23%  Similarity=0.367  Sum_probs=118.9

Q ss_pred             cccccCCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHH
Q 022927          154 ENTARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAA  233 (290)
Q Consensus       154 ~~~~~~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~  233 (290)
                      ......+..+..+++++|++.|.+++..+..+.+       |||+|+..|+.+++++|+++|++++..|..|+||||+|+
T Consensus        16 ~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   88 (169)
T 2y1l_E           16 KKLLEAARAGRDDEVRILMANGADVNAEDASGWT-------PLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAA   88 (169)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC-------HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             chHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCC-------HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence            3445556778889999999999999887766554       999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          234 LFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       234 ~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      ..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus        89 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  144 (169)
T 2y1l_E           89 LFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDK  144 (169)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence            99999999999999999999999999999999999999999999999999998764

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.90  E-value=1.3e-24  Score=172.70  Aligned_cols=124  Identities=19%  Similarity=0.252  Sum_probs=107.6

Q ss_pred             cCCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCc-HHHHHHHcC
Q 022927          158 RSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMS-LLHLAALFN  236 (290)
Q Consensus       158 ~~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~T-pLh~A~~~g  236 (290)
                      .....+..+++++|++.|++++..+..+.+       |||+|+ .|+.+++++|+++|++++.+|..|+| |||+|+..|
T Consensus        18 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-------~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~   89 (156)
T 1bi7_B           18 TAAARGRVEEVRALLEAGANPNAPNSYGRR-------PIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREG   89 (156)
T ss_dssp             HHHHHTCHHHHHHHHTTTCCTTCCCSSSCC-------TTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCCC-------HHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCC
Confidence            334567788899999999999887766555       899985 99999999999999999999999999 999999999


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          237 RTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       237 ~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      +.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..|.
T Consensus        90 ~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~  142 (156)
T 1bi7_B           90 FLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNH  142 (156)
T ss_dssp             CHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC--------
T ss_pred             CHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCc
Confidence            99999999999999999999999999999999999999999999999998764

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.90  E-value=2e-24  Score=167.69  Aligned_cols=121  Identities=21%  Similarity=0.305  Sum_probs=107.9

Q ss_pred             cccccCCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHH
Q 022927          154 ENTARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAA  233 (290)
Q Consensus       154 ~~~~~~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~  233 (290)
                      ......+..+..+.+++|++.|.+++..+..+.+       |||+|+..|+.+++++|+++|++++..|..|+||||+|+
T Consensus        16 t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~   88 (136)
T 2jab_A           16 KKLLEAARAGQDDEVRILMANGADVNAKDEYGLT-------PLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAA   88 (136)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC-------HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCC-------HHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence            3344445677788899999999998887765554       999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCC
Q 022927          234 LFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDK  281 (290)
Q Consensus       234 ~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G  281 (290)
                      ..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus        89 ~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           89 FIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999999999987

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.90  E-value=1.7e-24  Score=168.16  Aligned_cols=120  Identities=20%  Similarity=0.223  Sum_probs=108.9

Q ss_pred             cccCCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccC-CCcHHHHHHH
Q 022927          156 TARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQ-GMSLLHLAAL  234 (290)
Q Consensus       156 ~~~~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~-g~TpLh~A~~  234 (290)
                      .......+..+++++|++.|++++..+..+.+       |||+|+. |+.+++++|+++|++++.+|.. |+||||+|+.
T Consensus        16 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-------~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~   87 (136)
T 1d9s_A           16 LATAAARGQVETVRQLLEAGADPNALNRFGRR-------PIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAR   87 (136)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCT-------TTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCC-------HHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHH
Confidence            33345567788899999999998887765554       8999999 9999999999999999999999 9999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCC
Q 022927          235 FNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNN  283 (290)
Q Consensus       235 ~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd  283 (290)
                      .|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|||
T Consensus        88 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           88 EGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999999986

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.90  E-value=1.3e-23  Score=182.27  Aligned_cols=126  Identities=17%  Similarity=0.169  Sum_probs=116.3

Q ss_pred             ccCCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcC
Q 022927          157 ARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFN  236 (290)
Q Consensus       157 ~~~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g  236 (290)
                      ...+..+..+++++|++.|++++..+..+.+       |||+|+..++.+++++|+++|+++|.+|..|+||||+|+..|
T Consensus        91 h~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t-------~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g  163 (269)
T 4b93_B           91 HVAALHGRADLIPLLLKHGANAGARNADQAV-------PLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGG  163 (269)
T ss_dssp             HHHHHTTCTTHHHHHHHTTCCTTCCCTTCCC-------HHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHcCcHHHHHHHHhcCCCcCccCCCCCC-------ccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
Confidence            3345667788999999999998887766655       999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          237 RTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       237 ~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      +.+++++||++|+++|.+|..|+||||+|+..|+.++|++|+++|||+|++|.
T Consensus       164 ~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~  216 (269)
T 4b93_B          164 HHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNK  216 (269)
T ss_dssp             CGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCT
T ss_pred             CHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence            99999999999999999999999999999999999999999999999999875

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.90  E-value=2.6e-23  Score=158.45  Aligned_cols=99  Identities=22%  Similarity=0.228  Sum_probs=94.7

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCC
Q 022927          191 VNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQ  270 (290)
Q Consensus       191 ~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~  270 (290)
                      .+.|+||+|+..|+.+++++|++.|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus         6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~   85 (123)
T 3aaa_C            6 MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGH   85 (123)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCC
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCC
Q 022927          271 YKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       271 ~~iv~~Ll~~GAdin~~~~  289 (290)
                      .+++++|+++|++++.+|.
T Consensus        86 ~~~v~~Ll~~ga~~~~~~~  104 (123)
T 3aaa_C           86 VSCVKLLLSKGADKTVKGP  104 (123)
T ss_dssp             HHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHHHHHcCCCCCCcCC
Confidence            9999999999999998874

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.90  E-value=1.5e-23  Score=165.90  Aligned_cols=120  Identities=18%  Similarity=0.210  Sum_probs=109.0

Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHH
Q 022927          162 STSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIA  241 (290)
Q Consensus       162 s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv  241 (290)
                      .++.+.+++|++.|.+.+ .+.       .|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+++
T Consensus        12 ~g~~~~v~~Ll~~g~~~~-~~~-------~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v   83 (153)
T 1awc_B           12 AGQDDEVRILMANGAPFT-TDW-------LGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIV   83 (153)
T ss_dssp             HTCHHHHHHHHHHTCCCC-CCT-------TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             cCCHHHHHHHHHcCCCCC-cCC-------CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHH
Confidence            456677888999888664 222       345699999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          242 FILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       242 ~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      ++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus        84 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  131 (153)
T 1awc_B           84 EVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSK  131 (153)
T ss_dssp             HHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC
Confidence            999999999999999999999999999999999999999999998764

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.89  E-value=4.7e-23  Score=164.79  Aligned_cols=122  Identities=17%  Similarity=0.215  Sum_probs=102.3

Q ss_pred             CCCCCcccccccCC-CCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHH
Q 022927          161 GSTSNSNFSSIFNP-GQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD  239 (290)
Q Consensus       161 ~s~~~~~~~~Ll~~-g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~  239 (290)
                      ..++.+.++.|++. +.+.+..+..       +.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+
T Consensus        17 ~~g~~~~v~~ll~~~~~~~~~~~~~-------g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   89 (165)
T 3twr_A           17 KAGDVETVKKLCTVQSVNCRDIEGR-------QSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYE   89 (165)
T ss_dssp             HHTCHHHHHHHCCTTTTTCCCTTTT-------CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HhCCHHHHHHHHHcCCCCccccccC-------CCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHH
Confidence            34556677777764 3344433333       345899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          240 IAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       240 iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      ++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus        90 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  139 (165)
T 3twr_A           90 VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNR  139 (165)
T ss_dssp             HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCC
Confidence            99999999999999999999999999999999999999999999988764

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.89  E-value=5.7e-23  Score=159.45  Aligned_cols=99  Identities=22%  Similarity=0.222  Sum_probs=92.8

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCC
Q 022927          191 VNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQ  270 (290)
Q Consensus       191 ~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~  270 (290)
                      .|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus         9 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   88 (137)
T 3c5r_A            9 RGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGH   88 (137)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHHcCC
Confidence            45569999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCC
Q 022927          271 YKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       271 ~~iv~~Ll~~GAdin~~~~  289 (290)
                      .+++++|+++|++++..|.
T Consensus        89 ~~~v~~Ll~~ga~~~~~~~  107 (137)
T 3c5r_A           89 VDIVKLLLSYGASRNAVNI  107 (137)
T ss_dssp             HHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHHHHHcCCCCCCCCC
Confidence            9999999999999998864

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.89  E-value=3.3e-23  Score=168.14  Aligned_cols=94  Identities=26%  Similarity=0.304  Sum_probs=49.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHH
Q 022927          195 GLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMR  274 (290)
Q Consensus       195 ~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv  274 (290)
                      |||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++
T Consensus        42 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v  121 (179)
T 3f6q_A           42 PLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVA  121 (179)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHH
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHhCCCCCCCCC
Q 022927          275 QKMEEDKNNVGSTT  288 (290)
Q Consensus       275 ~~Ll~~GAdin~~~  288 (290)
                      ++|+++|++++..|
T Consensus       122 ~~Ll~~ga~~~~~~  135 (179)
T 3f6q_A          122 EDLVANGALVSICN  135 (179)
T ss_dssp             HHHHHTTCCSSBCC
T ss_pred             HHHHHCCCCcchhc
Confidence            55555555554443

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.89  E-value=2.7e-23  Score=166.53  Aligned_cols=123  Identities=23%  Similarity=0.207  Sum_probs=111.3

Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHH
Q 022927          160 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD  239 (290)
Q Consensus       160 ~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~  239 (290)
                      +..+..+.+++|++.|.+++..+..+.+       |||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+
T Consensus        11 ~~~g~~~~v~~ll~~~~~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   83 (167)
T 3v31_A           11 AAQGEMLYLATRIEQENVINHTDEEGFT-------PLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD   83 (167)
T ss_dssp             HHTTCHHHHHHHHHHSSCTTCCCTTSCC-------HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             HHCCCHHHHHHHHHcCCCcCCCCCCCCC-------HHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence            4456778889999998888877766555       899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          240 IAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       240 iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      ++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..|.
T Consensus        84 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  133 (167)
T 3v31_A           84 IVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETD  133 (167)
T ss_dssp             HHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence            99999999999999999999999999999999999999999999988764

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.89  E-value=4e-23  Score=166.35  Aligned_cols=122  Identities=20%  Similarity=0.197  Sum_probs=91.7

Q ss_pred             CCCCCcccccccCCCCC-CCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHH
Q 022927          161 GSTSNSNFSSIFNPGQV-TNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD  239 (290)
Q Consensus       161 ~s~~~~~~~~Ll~~g~~-~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~  239 (290)
                      ..++.+.++.|++.+.. ++..+..+.       ||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+
T Consensus        11 ~~g~~~~v~~ll~~~~~~~~~~~~~g~-------t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   83 (172)
T 3v30_A           11 AQGELDQLKEHLRKGDNLVNKPDERGF-------TPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTD   83 (172)
T ss_dssp             HTTCHHHHHHHHTTCSGGGGCCCTTSC-------CHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             HcCCHHHHHHHHHcCcccccCCCCCCC-------CHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHH
Confidence            34556667777777665 444444433       4788888888888888888888888888878888888888888888


Q ss_pred             HHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          240 IAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       240 iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      ++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..|.
T Consensus        84 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  133 (172)
T 3v30_A           84 IVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEAD  133 (172)
T ss_dssp             HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC
Confidence            88888888888888888888888888888888888888888888777653

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.89  E-value=2.2e-23  Score=177.26  Aligned_cols=122  Identities=20%  Similarity=0.250  Sum_probs=82.9

Q ss_pred             CCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCH
Q 022927          159 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRT  238 (290)
Q Consensus       159 ~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~  238 (290)
                      ....+..+.++.|++.|++++..        ..+.|+||+|+..|+.+++++||+.|+++|.+|..|+||||+|+..|+.
T Consensus        12 a~~~~~~~~~~~ll~~g~~~~~~--------~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~   83 (239)
T 1ycs_B           12 GKRTNLRKTGSERIAHGMRVKFN--------PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHT   83 (239)
T ss_dssp             ---------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCH
T ss_pred             hhhhhhHHHHHHHhccCCCcccC--------chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH
Confidence            34455667778888888887642        1345688888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCC
Q 022927          239 DIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT  288 (290)
Q Consensus       239 ~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~  288 (290)
                      +++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++..+
T Consensus        84 ~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~  133 (239)
T 1ycs_B           84 EIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMT  133 (239)
T ss_dssp             HHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceec
Confidence            88888888888888888888888888888888888888888888888765

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.89  E-value=3.3e-23  Score=169.87  Aligned_cols=123  Identities=22%  Similarity=0.269  Sum_probs=113.9

Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHH
Q 022927          160 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD  239 (290)
Q Consensus       160 ~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~  239 (290)
                      ...+..+.+++|++.|.+++..+..+.+       |||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+
T Consensus        43 ~~~g~~~~v~~Ll~~~~~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  115 (192)
T 2rfm_A           43 CMLGMENAIDKLVENFDKLEDKDIEGST-------ALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSE  115 (192)
T ss_dssp             HHHTCGGGHHHHHHHHCCTTCCCTTSCC-------HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHcCCHHHHHHHHHhccccccccccCcc-------HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHH
Confidence            4456778899999999988877665554       999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          240 IAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       240 iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      ++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus       116 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  165 (192)
T 2rfm_A          116 MSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDL  165 (192)
T ss_dssp             HHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCT
T ss_pred             HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence            99999999999999999999999999999999999999999999998764

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.89  E-value=4e-23  Score=157.00  Aligned_cols=115  Identities=28%  Similarity=0.371  Sum_probs=106.7

Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHH
Q 022927          162 STSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIA  241 (290)
Q Consensus       162 s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv  241 (290)
                      .+..+++++|++.|.+++..+..+.+       |||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++
T Consensus        12 ~~~~~~v~~Ll~~~~~~~~~~~~g~t-------~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~   84 (126)
T 1n0r_A           12 NGHLEVVKLLLEAGADVNAKDKNGRT-------PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVV   84 (126)
T ss_dssp             HTCHHHHHHHHHHTCCTTCCCTTSCC-------HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             cCcHHHHHHHHHcCCCCCCcCCCCCc-------HHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChHHHH
Confidence            34567788999999888877665554       99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCC
Q 022927          242 FILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNN  283 (290)
Q Consensus       242 ~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd  283 (290)
                      ++|+++|++++.+|..|+|||++|+..|+.+++++|+++|||
T Consensus        85 ~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           85 KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            999999999999999999999999999999999999999997

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.89  E-value=1.2e-23  Score=158.28  Aligned_cols=99  Identities=30%  Similarity=0.432  Sum_probs=94.9

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCC
Q 022927          191 VNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQ  270 (290)
Q Consensus       191 ~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~  270 (290)
                      .|.|+||+|+..|+.+++++|+++|++++..|..|+||||+|+..++.+++++|+++|++++.+|..|+||||+|+..++
T Consensus         8 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~~   87 (115)
T 2l6b_A            8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGH   87 (115)
T ss_dssp             SSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHTTTC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCC
Confidence            45669999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCC
Q 022927          271 YKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       271 ~~iv~~Ll~~GAdin~~~~  289 (290)
                      .+++++|+++|||+|..+.
T Consensus        88 ~~~~~~Ll~~ga~~n~~~~  106 (115)
T 2l6b_A           88 HEIVKLLDAKGADVNARSW  106 (115)
T ss_dssp             HHHHHHHHTTSSSHHHHSC
T ss_pred             HHHHHHHHHcCCCCCcCCc
Confidence            9999999999999987653

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.89  E-value=4.4e-23  Score=164.21  Aligned_cols=114  Identities=19%  Similarity=0.195  Sum_probs=102.9

Q ss_pred             CCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHH
Q 022927          163 TSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAF  242 (290)
Q Consensus       163 ~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~  242 (290)
                      +..+++++|++.|++++..+..+.+       |||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++++
T Consensus        48 ~~~~~v~~Ll~~g~~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~  120 (162)
T 1ihb_A           48 GNPEIARRLLLRGANPDLKDRTGFA-------VIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE  120 (162)
T ss_dssp             SCHHHHHHHHHTTCCTTCCCTTSCC-------HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             CcHHHHHHHHHcCCCCCCCCCCCCC-------HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence            7788889999999998887765554       899999999999999999999999999999999999999999999999


Q ss_pred             HHHHCCCC-CCCCCCCCCChhhhhhccCCHHHHHHHHhCCCC
Q 022927          243 ILMESGAN-MDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNN  283 (290)
Q Consensus       243 ~Ll~~Ga~-in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd  283 (290)
                      +|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|||
T Consensus       121 ~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          121 FLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             HHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             HHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            99999998 699999999999999999999999999999986

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.89  E-value=9.9e-23  Score=172.48  Aligned_cols=123  Identities=17%  Similarity=0.181  Sum_probs=103.1

Q ss_pred             CCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCH
Q 022927          159 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRT  238 (290)
Q Consensus       159 ~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~  238 (290)
                      ....+..+++++|++.|++++..+..+.+       |||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.
T Consensus        28 A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t-------pLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~  100 (229)
T 2vge_A           28 AALTGELEVVQQAVKEMNDPSQPNEEGIT-------ALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDT  100 (229)
T ss_dssp             HHHHTCHHHHHHHHHHSSCTTCCCTTSCC-------HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHcCCHHHHHHHHhcCCCCCCCCCCCCC-------HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            35667778888888888888776665554       88888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHCCCCCCCCC-CCCCChhhhh--hccCCHHHHHHHHhCCCCCCCCC
Q 022927          239 DIAFILMESGANMDCKN-AQGESPLDCA--PVTLQYKMRQKMEEDKNNVGSTT  288 (290)
Q Consensus       239 ~iv~~Ll~~Ga~in~~d-~~G~TpL~~A--~~~g~~~iv~~Ll~~GAdin~~~  288 (290)
                      +++++|+++|++++.++ ..|+||||+|  +..|+.+++++|+++|++++..|
T Consensus       101 ~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~  153 (229)
T 2vge_A          101 VICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMN  153 (229)
T ss_dssp             HHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSG
T ss_pred             HHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCccccc
Confidence            88888888888888886 5888888888  88888888888888888888775

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.89  E-value=1.1e-22  Score=157.89  Aligned_cols=100  Identities=24%  Similarity=0.385  Sum_probs=95.9

Q ss_pred             cccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccC
Q 022927          190 EVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTL  269 (290)
Q Consensus       190 ~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g  269 (290)
                      ..+.|+||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|
T Consensus        12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~   91 (136)
T 2jab_A           12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG   91 (136)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             ccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Confidence            34667999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCCCCCCC
Q 022927          270 QYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       270 ~~~iv~~Ll~~GAdin~~~~  289 (290)
                      +.+++++|+++|++++..|.
T Consensus        92 ~~~~v~~Ll~~g~~~~~~~~  111 (136)
T 2jab_A           92 HLEIAEVLLKHGADVNAQDK  111 (136)
T ss_dssp             CHHHHHHHHHTTCCTTCCCT
T ss_pred             CHHHHHHHHHcCCCCcCcCC
Confidence            99999999999999998764

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.88  E-value=5.6e-23  Score=163.61  Aligned_cols=121  Identities=19%  Similarity=0.285  Sum_probs=111.5

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHH
Q 022927          161 GSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDI  240 (290)
Q Consensus       161 ~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~i  240 (290)
                      ..+..+.+++|++.|.+++..+..+.+       |||+|+. |+.+++++|+++|++++.+|..|+||||+|+..|+.++
T Consensus        14 ~~g~~~~v~~Ll~~~~~~~~~~~~g~t-------~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~   85 (162)
T 1ihb_A           14 ARGDLEQLTSLLQNNVNVNAQNGFGRT-------ALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   85 (162)
T ss_dssp             HHTCHHHHHHHTTSCCCTTCCCTTSCC-------HHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HcCCHHHHHHHHhCCCCccccCccCcc-------HHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            446678889999999998887766555       9999999 99999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCC-CCCCCC
Q 022927          241 AFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNN-VGSTTS  289 (290)
Q Consensus       241 v~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd-in~~~~  289 (290)
                      +++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++ ++..|.
T Consensus        86 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  135 (162)
T 1ihb_A           86 LQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNH  135 (162)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCT
T ss_pred             HHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCC
Confidence            9999999999999999999999999999999999999999998 577653

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.88  E-value=6.2e-23  Score=159.22  Aligned_cols=106  Identities=17%  Similarity=0.245  Sum_probs=97.8

Q ss_pred             CCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Q 022927          176 QVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN  255 (290)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d  255 (290)
                      .+++..+..+.       ||||+|+..|+.+++++|+++|++++.+|..|+||||+|+. |+.+++++|+++|++++.+|
T Consensus         3 ~~~~~~~~~g~-------t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~   74 (136)
T 1d9s_A            3 PGIHMLGGSSD-------AGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCAD   74 (136)
T ss_dssp             CCCSCCCCCCS-------CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCB
T ss_pred             CCccCCCCCCc-------cHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcC
Confidence            34455554444       49999999999999999999999999999999999999999 99999999999999999999


Q ss_pred             CC-CCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          256 AQ-GESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       256 ~~-G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      .. |+||||+|+..|+.+++++|+++|++++.+|.
T Consensus        75 ~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~  109 (136)
T 1d9s_A           75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDA  109 (136)
T ss_dssp             TTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSS
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC
Confidence            99 99999999999999999999999999998874

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.88  E-value=2.6e-23  Score=176.07  Aligned_cols=117  Identities=21%  Similarity=0.234  Sum_probs=101.1

Q ss_pred             cccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHC
Q 022927          168 FSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMES  247 (290)
Q Consensus       168 ~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~  247 (290)
                      ++.|++.|++.+..+..+.    .+.|+||+|+..|+.+++++|++.|+++|.+|..|+||||+|+..|+.+++++|+++
T Consensus         1 v~~ll~~~~~~~~~~~~~~----~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~   76 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARL----NPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITA   76 (229)
T ss_dssp             ---------CCCCCCCTTS----CHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CeehhccCCCCcccccccc----chhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            4678888988877665444    356799999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCC
Q 022927          248 GANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT  288 (290)
Q Consensus       248 Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~  288 (290)
                      |++++.+|..|+||||+|+..|+.+++++|+++|++++..+
T Consensus        77 ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~  117 (229)
T 2vge_A           77 GANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATT  117 (229)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCC
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccc
Confidence            99999999999999999999999999999999999999874

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.88  E-value=9.3e-23  Score=165.45  Aligned_cols=124  Identities=23%  Similarity=0.267  Sum_probs=115.2

Q ss_pred             cCCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCC
Q 022927          158 RSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR  237 (290)
Q Consensus       158 ~~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~  237 (290)
                      .....+..+++++|++.|++++..+..+.+       |||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+
T Consensus        45 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~  117 (179)
T 3f6q_A           45 WACREGRSAVVEMLIMRGARINVMNRGDDT-------PLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQ  117 (179)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTCCC-------HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHcCcHHHHHHHHHcCCCCCCcCCCCCC-------HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            334566778999999999999887766555       9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCC
Q 022927          238 TDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT  288 (290)
Q Consensus       238 ~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~  288 (290)
                      .+++++|+++|++++.+|..|+|||++|+..++.+++++|+++|++++..+
T Consensus       118 ~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~~~  168 (179)
T 3f6q_A          118 DQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIP  168 (179)
T ss_dssp             HHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCSCBC
T ss_pred             HHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCcccCC
Confidence            999999999999999999999999999999999999999999999998764

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.88  E-value=3.6e-22  Score=172.51  Aligned_cols=99  Identities=21%  Similarity=0.227  Sum_probs=94.1

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHHCCCCCccccc-CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccC
Q 022927          191 VNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDK-QGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTL  269 (290)
Q Consensus       191 ~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~-~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g  269 (290)
                      .|.||||+|+..|+.+++++|+++|++++..+. .|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|
T Consensus       157 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~  236 (282)
T 1oy3_D          157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRP  236 (282)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSS
T ss_pred             CCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcC
Confidence            456799999999999999999999999999985 4999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCCCCCCC
Q 022927          270 QYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       270 ~~~iv~~Ll~~GAdin~~~~  289 (290)
                      +.+++++|+++||+++.+|.
T Consensus       237 ~~~~v~~Ll~~ga~~~~~~~  256 (282)
T 1oy3_D          237 NPILARLLRAHGAPEPEDGG  256 (282)
T ss_dssp             CHHHHHHHHHTTCCCCCCC-
T ss_pred             CcHHHHHHHHcCCCcCcCCC
Confidence            99999999999999998874

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.87  E-value=6.5e-23  Score=165.09  Aligned_cols=123  Identities=20%  Similarity=0.163  Sum_probs=113.7

Q ss_pred             CCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCH
Q 022927          159 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRT  238 (290)
Q Consensus       159 ~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~  238 (290)
                      ....+..+++++|++.|++++..+..+.+       |||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus        43 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  115 (172)
T 3v30_A           43 ASAFGEIETVRFLLEWGADPHILAKERES-------ALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHV  115 (172)
T ss_dssp             HHHTTCHHHHHHHHHHTCCTTCCCTTCCC-------HHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHcCCHHHHHHHHHcCCCchhhcccCCC-------HHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            34567788999999999999887766555       99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCC
Q 022927          239 DIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT  288 (290)
Q Consensus       239 ~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~  288 (290)
                      +++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+++...+
T Consensus       116 ~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~  165 (172)
T 3v30_A          116 KCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSN  165 (172)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-
T ss_pred             HHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999999999999999999999999877655

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.87  E-value=3.2e-22  Score=159.94  Aligned_cols=117  Identities=21%  Similarity=0.258  Sum_probs=107.0

Q ss_pred             cCCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCC
Q 022927          158 RSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR  237 (290)
Q Consensus       158 ~~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~  237 (290)
                      .....+..+++++|++.|++++..+..+.+       |||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+
T Consensus        48 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  120 (165)
T 3twr_A           48 FAAGYNRVSVVEYLLQHGADVHAKDKGGLV-------PLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGK  120 (165)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-------HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             HHHHcChHHHHHHHHhcCCCCCccCCCCCC-------HHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCC
Confidence            334567788999999999999888776555       9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCC
Q 022927          238 TDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKN  282 (290)
Q Consensus       238 ~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA  282 (290)
                      .+++++|+++|++++.+|..|+||||+|.. ++.+++++|+++||
T Consensus       121 ~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          121 YEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             HHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence            999999999999999999999999999887 89999999999997

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.87  E-value=3.5e-22  Score=173.21  Aligned_cols=118  Identities=19%  Similarity=0.208  Sum_probs=104.4

Q ss_pred             CcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHH
Q 022927          165 NSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFIL  244 (290)
Q Consensus       165 ~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~L  244 (290)
                      ...+++|+..|++++..+..+.+       |||+|+..|+.++|++|++.|++++..+..|.||||+|+..++.+++++|
T Consensus        66 ~~~v~~Ll~~Gadvn~~d~~G~T-------pLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~L  138 (269)
T 4b93_B           66 QKRLAKVPASGLGVNVTSQDGSS-------PLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCL  138 (269)
T ss_dssp             ---------CCCCTTCCCTTSCC-------HHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCcCCCCCC-------HHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHH
Confidence            35678999999999988776655       99999999999999999999999999999999999999999999999999


Q ss_pred             HHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          245 MESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       245 l~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      +++|+++|.+|..|+||||+|+..|+.+++++|+++|||+|..+.
T Consensus       139 l~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~  183 (269)
T 4b93_B          139 LDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNN  183 (269)
T ss_dssp             HHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCT
T ss_pred             HHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCcccc
Confidence            999999999999999999999999999999999999999998864

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.87  E-value=5.8e-22  Score=166.21  Aligned_cols=123  Identities=16%  Similarity=0.086  Sum_probs=112.3

Q ss_pred             CCCCCCcccccccCCC--CCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCC
Q 022927          160 RGSTSNSNFSSIFNPG--QVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR  237 (290)
Q Consensus       160 ~~s~~~~~~~~Ll~~g--~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~  237 (290)
                      ...+..+++++|++.|  .+++..+..+.       ||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus        80 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~-------t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  152 (228)
T 2dzn_A           80 CSVGNLEVVKSLYDRPLKPDLNKITNQGV-------TCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGS  152 (228)
T ss_dssp             HHHCCHHHHHHHHSSSSCCCTTCCCTTCC-------CHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTC
T ss_pred             HHcCCHHHHHHHHhCCCCcccccCCcCCC-------CHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCC
Confidence            3456678889999998  66666665554       49999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCC-CCCCCCCCCCCChhhhhhccCCHHHHHHHH-hCCCCCCCCCC
Q 022927          238 TDIAFILMESG-ANMDCKNAQGESPLDCAPVTLQYKMRQKME-EDKNNVGSTTS  289 (290)
Q Consensus       238 ~~iv~~Ll~~G-a~in~~d~~G~TpL~~A~~~g~~~iv~~Ll-~~GAdin~~~~  289 (290)
                      .+++++|+++| ++++.+|..|+||||+|+..|+.+++++|+ ++|+|++..|.
T Consensus       153 ~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~  206 (228)
T 2dzn_A          153 LKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN  206 (228)
T ss_dssp             HHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCT
T ss_pred             HHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCC
Confidence            99999999999 999999999999999999999999999999 89999998874

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.87  E-value=6e-22  Score=166.56  Aligned_cols=123  Identities=15%  Similarity=0.157  Sum_probs=112.3

Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHH
Q 022927          160 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD  239 (290)
Q Consensus       160 ~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~  239 (290)
                      ...+..+++++|++.|.+++..+..+.+       |||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+
T Consensus        81 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-------~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  153 (231)
T 3aji_A           81 ASAGXDEIVKALLVKGAHVNAVNQNGCT-------PLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLK  153 (231)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCC-------HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHcCHHHHHHHHHHcCCCCCCCCCCCCC-------HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence            3456678889999999998877665554       999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          240 IAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       240 iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      ++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus       154 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  203 (231)
T 3aji_A          154 MVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENK  203 (231)
T ss_dssp             HHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCT
T ss_pred             HHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999998764

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.87  E-value=1.3e-22  Score=172.58  Aligned_cols=124  Identities=22%  Similarity=0.164  Sum_probs=114.0

Q ss_pred             cCCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCC
Q 022927          158 RSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR  237 (290)
Q Consensus       158 ~~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~  237 (290)
                      .....+..+++++|++.|++++..+..+.+       |||+|+..|+.+++++||++|+++|.+|..|+||||+|+..|+
T Consensus        43 ~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t-------~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~  115 (239)
T 1ycs_B           43 DSSLEGEFDLVQRIIYEVDDPSLPNDEGIT-------ALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNN  115 (239)
T ss_dssp             HHHHHTCHHHHHHHTSTTSSCCCCCTTSCC-------HHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcCCCCCC-------HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            334567788999999999999888766655       9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCC-Chhhhh--hccCCHHHHHHHHhCCCCCCCCC
Q 022927          238 TDIAFILMESGANMDCKNAQGE-SPLDCA--PVTLQYKMRQKMEEDKNNVGSTT  288 (290)
Q Consensus       238 ~~iv~~Ll~~Ga~in~~d~~G~-TpL~~A--~~~g~~~iv~~Ll~~GAdin~~~  288 (290)
                      .+++++|+++|++++.++..|. ||||+|  +..|+.+++++|+++|++++..+
T Consensus       116 ~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~  169 (239)
T 1ycs_B          116 VQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMN  169 (239)
T ss_dssp             HHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTG
T ss_pred             HHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccc
Confidence            9999999999999999998887 999999  78899999999999999998764

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.87  E-value=8.5e-22  Score=166.56  Aligned_cols=126  Identities=19%  Similarity=0.168  Sum_probs=69.6

Q ss_pred             CCCCCCCcccccccCCCCCCCCCCCCCCccc--------------------------------cccchHHHHHHHcCCHH
Q 022927          159 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEY--------------------------------EVNGEGLRDAIKNGDAA  206 (290)
Q Consensus       159 ~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~--------------------------------~~~~t~Lh~A~~~g~~~  206 (290)
                      ....+..+++++|++.|++++..+..+.++.                                ..|.||||+|+..|+.+
T Consensus        52 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  131 (236)
T 1ikn_D           52 AVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLG  131 (236)
T ss_dssp             HHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHH
Confidence            3445667788888888888877665554411                                12344555555555555


Q ss_pred             HHHHHHHCCCCCccccc-CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCC
Q 022927          207 AVKKLLSEGVDANFCDK-QGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNV  284 (290)
Q Consensus       207 ~v~~Ll~~g~~vn~~d~-~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdi  284 (290)
                      ++++|+++|++++.++. .|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++||+.
T Consensus       132 ~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~  210 (236)
T 1ikn_D          132 IVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN  210 (236)
T ss_dssp             HHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGG
T ss_pred             HHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhh
Confidence            55555555555555554 5555555555555555555555555555555555555555555555555555555555543

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.87  E-value=3.5e-22  Score=171.02  Aligned_cols=122  Identities=24%  Similarity=0.270  Sum_probs=104.6

Q ss_pred             CCCCCcccccccCCCC-CCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHH
Q 022927          161 GSTSNSNFSSIFNPGQ-VTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD  239 (290)
Q Consensus       161 ~s~~~~~~~~Ll~~g~-~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~  239 (290)
                      ..+..+++++|++.+. +++..+..+       .||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+
T Consensus        99 ~~~~~~~v~~Ll~~~~~~~~~~~~~g-------~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~  171 (253)
T 1yyh_A           99 SADAQGVFQILIRNRATDLDARMHDG-------TTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVD  171 (253)
T ss_dssp             HHTCHHHHHHHHHSTTSCTTCCCTTC-------CCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHH
T ss_pred             HcCCHHHHHHHHHcCCCCccccCCCC-------CcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHH
Confidence            3455566777777665 555554444       45899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          240 IAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       240 iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      ++++|+++|++++.+|..|+||||+|+..|+.+++++|+++||+++.+|.
T Consensus       172 ~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~  221 (253)
T 1yyh_A          172 AAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDH  221 (253)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccc
Confidence            99999999999999999999999999999999999999999999988774

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.87  E-value=6.8e-22  Score=165.83  Aligned_cols=99  Identities=20%  Similarity=0.199  Sum_probs=91.1

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCChhhhhhccC
Q 022927          191 VNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMES-GANMDCKNAQGESPLDCAPVTL  269 (290)
Q Consensus       191 ~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~-Ga~in~~d~~G~TpL~~A~~~g  269 (290)
                      .+.|+||+|+..|+.+++++||+.|++++.+|..|+||||+|+..|+.+++++|+++ |++++.+|..|+||||+|+..|
T Consensus        72 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~  151 (222)
T 3ehr_A           72 SIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKG  151 (222)
T ss_dssp             EESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHT
T ss_pred             ccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcC
Confidence            456799999999999999999999999999999999999999999999999999998 9999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCCCCCCC
Q 022927          270 QYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       270 ~~~iv~~Ll~~GAdin~~~~  289 (290)
                      +.+++++|+++||+++.+|.
T Consensus       152 ~~~~v~~Ll~~ga~~~~~~~  171 (222)
T 3ehr_A          152 YADIVQLLLAKGARTDLRNI  171 (222)
T ss_dssp             CHHHHHHHHHHTCCSCCCCT
T ss_pred             CHHHHHHHHHcCCCCccccC
Confidence            99999999999999988764

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.87  E-value=6.3e-22  Score=159.13  Aligned_cols=116  Identities=22%  Similarity=0.299  Sum_probs=107.7

Q ss_pred             CCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCH
Q 022927          159 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRT  238 (290)
Q Consensus       159 ~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~  238 (290)
                      ....+..+++++|++.|++++..+..+.+       |||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.
T Consensus        54 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-------~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  126 (169)
T 2y1l_E           54 AAFNGHLEIVEVLLKNGADVNAVDHAGMT-------PLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHL  126 (169)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCC-------HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCccCCCCCC-------HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            34566778899999999998887766554       99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCC
Q 022927          239 DIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDK  281 (290)
Q Consensus       239 ~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G  281 (290)
                      +++++|+++|++++.+|..|.|||++|+..|+.+++++|+++|
T Consensus       127 ~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          127 EIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999987

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.86  E-value=1.9e-21  Score=147.61  Aligned_cols=98  Identities=31%  Similarity=0.428  Sum_probs=94.8

Q ss_pred             cchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCH
Q 022927          192 NGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQY  271 (290)
Q Consensus       192 ~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~  271 (290)
                      |.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~   81 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL   81 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChH
Confidence            56799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCC
Q 022927          272 KMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       272 ~iv~~Ll~~GAdin~~~~  289 (290)
                      +++++|+++|++++.+|.
T Consensus        82 ~~~~~Ll~~g~~~~~~~~   99 (126)
T 1n0r_A           82 EVVKLLLEAGADVNAKDK   99 (126)
T ss_dssp             HHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHHHHcCCCCcccCC
Confidence            999999999999998763

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.86  E-value=9.8e-22  Score=165.51  Aligned_cols=119  Identities=16%  Similarity=0.196  Sum_probs=58.2

Q ss_pred             CCCcccccccCC-CCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCC-----cccccCCCcHHHHHHHcC
Q 022927          163 TSNSNFSSIFNP-GQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDA-----NFCDKQGMSLLHLAALFN  236 (290)
Q Consensus       163 ~~~~~~~~Ll~~-g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~v-----n~~d~~g~TpLh~A~~~g  236 (290)
                      +..+.++.|++. |.+++..+..+.+       |||+|+..|+.+++++|+++|+++     +..|..|+||||+|+..|
T Consensus        14 g~~~~v~~Ll~~~g~~~~~~~~~g~t-------~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~   86 (232)
T 2rfa_A           14 NDVQALSKLLKFEGCEVHQRGAMGET-------ALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQ   86 (232)
T ss_dssp             TCHHHHHHHHTTTCSCTTCCCTTSCC-------HHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTT
T ss_pred             CCHHHHHHHHHhcCCCcccCCCCCCC-------HHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcC
Confidence            334444555544 5555444433333       455555555555555555554443     333444555555555555


Q ss_pred             CHHHHHHHHHCCCCCCCCCC-------------CCCChhhhhhccCCHHHHHHHHhCCCCCCCCC
Q 022927          237 RTDIAFILMESGANMDCKNA-------------QGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT  288 (290)
Q Consensus       237 ~~~iv~~Ll~~Ga~in~~d~-------------~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~  288 (290)
                      +.+++++|+++|++++.++.             .|+||||+|+..|+.+++++|+++|+|++.+|
T Consensus        87 ~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d  151 (232)
T 2rfa_A           87 NVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQD  151 (232)
T ss_dssp             CHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred             CHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Confidence            55555555555555544433             35555555555555555555555555554443

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.86  E-value=1.4e-21  Score=163.36  Aligned_cols=121  Identities=24%  Similarity=0.273  Sum_probs=82.9

Q ss_pred             CCCCCcccccccCCCC-CCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHH
Q 022927          161 GSTSNSNFSSIFNPGQ-VTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD  239 (290)
Q Consensus       161 ~s~~~~~~~~Ll~~g~-~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~  239 (290)
                      ..+..+++++|++.+. +++..+..+       .||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+
T Consensus        67 ~~~~~~~v~~Ll~~~~~~~~~~~~~g-------~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  139 (223)
T 2f8y_A           67 SADAQGVFQILIRNRATDLDARMHDG-------TTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVD  139 (223)
T ss_dssp             HTTCHHHHHHHHHBTTSCTTCCCTTC-------CCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHH
T ss_pred             HcCCHHHHHHHHHcCCCCcccCCCCC-------CcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHH
Confidence            3445556666666554 444443333       33777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCC
Q 022927          240 IAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT  288 (290)
Q Consensus       240 iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~  288 (290)
                      ++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|
T Consensus       140 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~  188 (223)
T 2f8y_A          140 AAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD  188 (223)
T ss_dssp             HHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccc
Confidence            7777777777777777777777777777777777777777777776665

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.86  E-value=1e-21  Score=155.43  Aligned_cols=112  Identities=21%  Similarity=0.238  Sum_probs=62.0

Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHH
Q 022927          160 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD  239 (290)
Q Consensus       160 ~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~  239 (290)
                      +..+..+++++|++.|++++..+..+.+       |||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+
T Consensus        43 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  115 (156)
T 1bd8_A           43 MMFGSTAIALELLKQGASPNVQDTSGTS-------PVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTA  115 (156)
T ss_dssp             SCTTCHHHHHHHHHTTCCTTCCCTTSCC-------HHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHcCCHHHHHHHHHCCCCCCCcCCCCCC-------HHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHH
Confidence            4444555555555555555544443332       555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHh
Q 022927          240 IAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEE  279 (290)
Q Consensus       240 iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~  279 (290)
                      ++++|+++ ++++.+|..|+||||+|+..|+.+++++|++
T Consensus       116 ~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A          116 VVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             HHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             HHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            55555555 5555555555555555555555555555554

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.86  E-value=1.3e-21  Score=154.82  Aligned_cols=119  Identities=18%  Similarity=0.215  Sum_probs=107.0

Q ss_pred             CCCCcccccccCC-CCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHH
Q 022927          162 STSNSNFSSIFNP-GQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDI  240 (290)
Q Consensus       162 s~~~~~~~~Ll~~-g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~i  240 (290)
                      .++.+.++.|++. +.+++..+..+.       ||||+ +..|+.+++++|+++|++++.+|..|+||||+|+..|+.++
T Consensus        12 ~g~~~~v~~ll~~~~~~~~~~~~~g~-------t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~   83 (156)
T 1bd8_A           12 RGDVQEVRRLLHRELVHPDALNRFGK-------TALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDT   83 (156)
T ss_dssp             HTCHHHHHHHHHTTCCCTTCCCTTSC-------CHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             hCCHHHHHHHHHhhCcCccccCCCCC-------cHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHH
Confidence            4556777888877 336666665544       49999 99999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          241 AFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       241 v~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      +++|+++|++++.+|..|+||||+|+..|+.+++++|+++ ++++..|.
T Consensus        84 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~  131 (156)
T 1bd8_A           84 LKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDA  131 (156)
T ss_dssp             HHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCT
T ss_pred             HHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCC
Confidence            9999999999999999999999999999999999999999 99988764

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.86  E-value=1.3e-21  Score=159.41  Aligned_cols=99  Identities=19%  Similarity=0.253  Sum_probs=94.8

Q ss_pred             cccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCChhhhhhcc
Q 022927          190 EVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN-AQGESPLDCAPVT  268 (290)
Q Consensus       190 ~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d-~~G~TpL~~A~~~  268 (290)
                      ..|.||||+|+..|+.+++++|++ |+++|.+|..|+||||+|+..|+.+++++|+++|++++.++ ..|+||||+|+..
T Consensus        42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~  120 (183)
T 3deo_A           42 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY  120 (183)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhc
Confidence            457789999999999999999999 99999999999999999999999999999999999999998 8899999999999


Q ss_pred             CCHHHHHHHHhCCCCCCCCCC
Q 022927          269 LQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       269 g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      |+.+++++|+++|++++.+|.
T Consensus       121 ~~~~~v~~Ll~~ga~~~~~d~  141 (183)
T 3deo_A          121 VRPEVVEALVELGADIEVEDE  141 (183)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCT
T ss_pred             CcHHHHHHHHHcCCCCcCCCC
Confidence            999999999999999998874

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.86  E-value=1.5e-21  Score=170.34  Aligned_cols=124  Identities=17%  Similarity=0.196  Sum_probs=106.7

Q ss_pred             CCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCccccc---------------
Q 022927          159 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDK---------------  223 (290)
Q Consensus       159 ~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~---------------  223 (290)
                      ....+..+++++|++.|++++..+..+.+       |||+|+..|+.+++++|+++|++++..|.               
T Consensus        80 A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t-------pL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~  152 (299)
T 1s70_B           80 ACIDDNVDMVKFLVENGANINQPDNEGWI-------PLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAME  152 (299)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCC-------HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCc-------HHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchH
Confidence            34566778888899988888877665554       89999999999999999999988876553               


Q ss_pred             ---------------------------------------------CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Q 022927          224 ---------------------------------------------QGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG  258 (290)
Q Consensus       224 ---------------------------------------------~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G  258 (290)
                                                                   .|.||||+|+..|+.+++++|+++|++++.+|..|
T Consensus       153 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g  232 (299)
T 1s70_B          153 ELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDG  232 (299)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTC
T ss_pred             HHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCC
Confidence                                                         46788888999999999999999999999999999


Q ss_pred             CChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          259 ESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       259 ~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      +||||+|+..|+.+++++|+++|||++++|.
T Consensus       233 ~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~  263 (299)
T 1s70_B          233 WTPLHAAAHWGKEEACRILVENLCDMEAVNK  263 (299)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             CcHHHHHHhcCCHHHHHHHHHcCCCCCCcCC
Confidence            9999999999999999999999999998874

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.85  E-value=2.7e-21  Score=163.18  Aligned_cols=124  Identities=24%  Similarity=0.242  Sum_probs=112.8

Q ss_pred             CCCCCCCcccccccCCC-CCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCC
Q 022927          159 SRGSTSNSNFSSIFNPG-QVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR  237 (290)
Q Consensus       159 ~~~s~~~~~~~~Ll~~g-~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~  237 (290)
                      ....+..+++++|++.| .+++..+..+.       ||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+
T Consensus        84 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~-------t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  156 (237)
T 3b7b_A           84 AAKKGHYEVVQYLLSNGQMDVNCQDDGGW-------TPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGC  156 (237)
T ss_dssp             HHHTTCHHHHHHHHTTTCCCTTCCCTTSC-------CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCC
T ss_pred             HHHcCCHHHHHHHHhCCCCCcccCCCCCC-------CHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCC
Confidence            34556778889999988 67766665544       49999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          238 TDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       238 ~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      .+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus       157 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~  208 (237)
T 3b7b_A          157 VDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNK  208 (237)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCT
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCC
Confidence            9999999999999999999999999999999999999999999999998874

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.85  E-value=1.4e-21  Score=170.26  Aligned_cols=123  Identities=15%  Similarity=0.175  Sum_probs=106.9

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHc---CCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCC
Q 022927          161 GSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKN---GDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR  237 (290)
Q Consensus       161 ~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~---g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~  237 (290)
                      ..++...+..++..|.+++.... -......|.||||+|+..   |+.+++++|+++|+++|.+|..|+||||+|+..|+
T Consensus       139 ~~~d~~~~~~ll~~g~~~~~~~~-l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~  217 (278)
T 1dcq_A          139 KTRDIFGLLQAYADGVDLTEKIP-LANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDN  217 (278)
T ss_dssp             HTTCHHHHHHHHHTTCCTTSBCC-CSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTC
T ss_pred             hhcccHHHHHHHHhhcchhhhcc-ccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCC
Confidence            45556667778888887654321 111123567799999999   89999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCC
Q 022927          238 TDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNV  284 (290)
Q Consensus       238 ~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdi  284 (290)
                      .+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++.
T Consensus       218 ~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          218 AECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            99999999999999999999999999999999999999999999964

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.85  E-value=6.5e-22  Score=157.04  Aligned_cols=98  Identities=16%  Similarity=0.234  Sum_probs=93.7

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCC-hhhhhhccC
Q 022927          191 VNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGES-PLDCAPVTL  269 (290)
Q Consensus       191 ~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~T-pL~~A~~~g  269 (290)
                      .+.|+||+|+..|+.+++++|+++|++++..|..|+||||+|+ .|+.+++++|+++|++++.+|..|+| |||+|+..|
T Consensus        11 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~   89 (156)
T 1bi7_B           11 PSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREG   89 (156)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHT
T ss_pred             cchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCC
Confidence            4567999999999999999999999999999999999999985 99999999999999999999999999 999999999


Q ss_pred             CHHHHHHHHhCCCCCCCCCC
Q 022927          270 QYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       270 ~~~iv~~Ll~~GAdin~~~~  289 (290)
                      +.+++++|+++|++++.+|.
T Consensus        90 ~~~~v~~Ll~~ga~~~~~d~  109 (156)
T 1bi7_B           90 FLDTLVVLHRAGARLDVRDA  109 (156)
T ss_dssp             CHHHHHHHHHHTCCSSCCCT
T ss_pred             CHHHHHHHHHcCCCCcccCC
Confidence            99999999999999998864

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.85  E-value=2.2e-21  Score=153.30  Aligned_cols=112  Identities=21%  Similarity=0.254  Sum_probs=104.3

Q ss_pred             CCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCH
Q 022927          159 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRT  238 (290)
Q Consensus       159 ~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~  238 (290)
                      ....+..+++++|++.|.+++..+..+.+       |||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus        41 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  113 (153)
T 1awc_B           41 AAQYGHFSTTEVLLRAGVSRDARTKVDRT-------PLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQ  113 (153)
T ss_dssp             HHHHTCHHHHHHHHTTTCCTTCCCTTCCC-------HHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCCCCCCCC-------HHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            34456778899999999999887766554       99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHH
Q 022927          239 DIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKM  277 (290)
Q Consensus       239 ~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~L  277 (290)
                      +++++|+++|++++.+|..|+||||+|+..|+.+++++|
T Consensus       114 ~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          114 EVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            999999999999999999999999999999999999987

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.85  E-value=2.6e-21  Score=162.67  Aligned_cols=123  Identities=26%  Similarity=0.285  Sum_probs=113.0

Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHH
Q 022927          160 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD  239 (290)
Q Consensus       160 ~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~  239 (290)
                      ...+..+++++|++.|.+++..+..+.+       |||+|+..|+.+++++|+++|++++..|..|.||||+|+..++.+
T Consensus        48 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  120 (231)
T 3aji_A           48 CSAGHTEIVEFLLQLGVPVNDKDDAGWS-------PLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHE  120 (231)
T ss_dssp             HHHTCHHHHHHHHHTTCCSCCCCTTSCC-------HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHcCcHHHHHHHHHhCCCCCCcCCCCCC-------HHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            4456778889999999998887766554       999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          240 IAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       240 iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      ++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus       121 ~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  170 (231)
T 3aji_A          121 IAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDT  170 (231)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT
T ss_pred             HHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCC
Confidence            99999999999999999999999999999999999999999999998764

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.85  E-value=1.2e-21  Score=160.59  Aligned_cols=99  Identities=14%  Similarity=0.128  Sum_probs=73.8

Q ss_pred             ccchHHHHHHHcCCH----HHHHHHHHCCCCCcccccCCCcHHHHHHHcCC------HHHHHHHHHCCCCCCCCCCCCC-
Q 022927          191 VNGEGLRDAIKNGDA----AAVKKLLSEGVDANFCDKQGMSLLHLAALFNR------TDIAFILMESGANMDCKNAQGE-  259 (290)
Q Consensus       191 ~~~t~Lh~A~~~g~~----~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~------~~iv~~Ll~~Ga~in~~d~~G~-  259 (290)
                      .|+||||+|+..|+.    +++++||++|+++|.+|..|+||||+|+..++      .+++++|+++|+++|.+|..|+ 
T Consensus        37 ~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~t  116 (186)
T 3t8k_A           37 LKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKI  116 (186)
T ss_dssp             HTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTB
T ss_pred             CCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCc
Confidence            355678888877764    47778888888888888788888888777776      4677788888888888887787 


Q ss_pred             ChhhhhhccC-----CHHHHHHHHh-CCCCCCCCCC
Q 022927          260 SPLDCAPVTL-----QYKMRQKMEE-DKNNVGSTTS  289 (290)
Q Consensus       260 TpL~~A~~~g-----~~~iv~~Ll~-~GAdin~~~~  289 (290)
                      ||||+|+..+     +.+++++|++ +|||++++|.
T Consensus       117 tpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~  152 (186)
T 3t8k_A          117 VVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDK  152 (186)
T ss_dssp             CTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCT
T ss_pred             hHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCC
Confidence            8888877733     3557778887 7888877764

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.85  E-value=2.7e-21  Score=166.72  Aligned_cols=124  Identities=19%  Similarity=0.194  Sum_probs=114.8

Q ss_pred             CCCCCCcccccccCC-CCCCCCCCCCCCccccccchHHHHHHHcCC----HHHHHHHHHCCCCCcccccCCCcHHHHHHH
Q 022927          160 RGSTSNSNFSSIFNP-GQVTNGATDKPRMEYEVNGEGLRDAIKNGD----AAAVKKLLSEGVDANFCDKQGMSLLHLAAL  234 (290)
Q Consensus       160 ~~s~~~~~~~~Ll~~-g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~----~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~  234 (290)
                      ...+..+++++|++. |.+++..+..+.+       |||+|+..++    .+++++|+++|++++.+|..|+||||+|+.
T Consensus       156 ~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t-------~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~  228 (285)
T 1wdy_A          156 AEKGHVEVLKILLDEMGADVNACDNMGRN-------ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVE  228 (285)
T ss_dssp             HHHTCHHHHHHHHHTSCCCTTCCCTTSCC-------HHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHhcCCCCCccCCCCCC-------HHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence            445667888999987 9998887766555       9999999999    999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHH-CCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCCC
Q 022927          235 FNRTDIAFILME-SGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTSV  290 (290)
Q Consensus       235 ~g~~~iv~~Ll~-~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~~  290 (290)
                      .|+.+++++|++ +|++++.+|..|+||||+|+..|+.+++++|+++||+++.+|.+
T Consensus       229 ~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d~~  285 (285)
T 1wdy_A          229 KKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDLV  285 (285)
T ss_dssp             TTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSCC
T ss_pred             cCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCccccC
Confidence            999999999999 79999999999999999999999999999999999999999864

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.85  E-value=4e-22  Score=167.23  Aligned_cols=121  Identities=21%  Similarity=0.199  Sum_probs=101.3

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHC-CCCCcccccCCCcHHHHHHHcCCHH
Q 022927          161 GSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSE-GVDANFCDKQGMSLLHLAALFNRTD  239 (290)
Q Consensus       161 ~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~-g~~vn~~d~~g~TpLh~A~~~g~~~  239 (290)
                      ..+..+++++|++.|++++..+..+.+       |||+|+..|+.+++++||+. |+++|.+|..|+||||+|+..|+.+
T Consensus        82 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~  154 (222)
T 3ehr_A           82 KRGNLSWLRECLDNRVGVNGLDKAGST-------ALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYAD  154 (222)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCC-------HHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHH
T ss_pred             ccCcHHHHHHHHhCCCCccccCCCCCC-------HHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHH
Confidence            445678889999999999887766555       99999999999999999999 9999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCC
Q 022927          240 IAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT  288 (290)
Q Consensus       240 iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~  288 (290)
                      ++++|+++|++++.+|..|+|||++|+..++.++++.|++.|++.+..|
T Consensus       155 ~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~  203 (222)
T 3ehr_A          155 IVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSN  203 (222)
T ss_dssp             HHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-------------
T ss_pred             HHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccc
Confidence            9999999999999999999999999999999999999999999987765

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.85  E-value=2.2e-21  Score=163.86  Aligned_cols=123  Identities=19%  Similarity=0.201  Sum_probs=109.3

Q ss_pred             CCCCCCcccccccCCCC----CCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccc-cCCCcHHHHHHH
Q 022927          160 RGSTSNSNFSSIFNPGQ----VTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCD-KQGMSLLHLAAL  234 (290)
Q Consensus       160 ~~s~~~~~~~~Ll~~g~----~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d-~~g~TpLh~A~~  234 (290)
                      ...+..+++++|++.+.    +++..+..       |.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+.
T Consensus        87 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~-------g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~  159 (241)
T 1k1a_A           87 CEHRSPTCLRALLDSAAPGTLDLEARNYD-------GLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVE  159 (241)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTT-------SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCccccccccCcC-------CCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHH
Confidence            44566778888888776    45544444       4459999999999999999999999999998 789999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          235 FNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       235 ~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      .|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus       160 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  214 (241)
T 1k1a_A          160 NNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNC  214 (241)
T ss_dssp             TTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred             cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCC
Confidence            9999999999999999999999999999999999999999999999999998864

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.85  E-value=1.6e-21  Score=166.94  Aligned_cols=126  Identities=15%  Similarity=0.136  Sum_probs=111.0

Q ss_pred             ccCCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCC-CCcccccCCCcHHHHHHHc
Q 022927          157 ARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGV-DANFCDKQGMSLLHLAALF  235 (290)
Q Consensus       157 ~~~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~-~vn~~d~~g~TpLh~A~~~  235 (290)
                      ......+..+++++|++.|++++..+..+.+       |||+|+..|+.+++++|+++|. +++..|..|+||||+|+..
T Consensus        62 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~  134 (253)
T 1yyh_A           62 HLAARYSRSDAAKRLLEASADANIQDNMGRT-------PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL  134 (253)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-------HHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC-------HHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHc
Confidence            3334566778889999999988887765554       8999999999999999999987 8999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          236 NRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       236 g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      |+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus       135 ~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  188 (253)
T 1yyh_A          135 AVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN  188 (253)
T ss_dssp             TCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred             ChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence            999999999999999999999999999999999999999999999999988764

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.85  E-value=1.1e-21  Score=157.17  Aligned_cols=120  Identities=23%  Similarity=0.161  Sum_probs=110.8

Q ss_pred             CCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCH
Q 022927          159 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRT  238 (290)
Q Consensus       159 ~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~  238 (290)
                      ....+..+++++|++.|++++..+..+.+       |||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.
T Consensus        43 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  115 (167)
T 3v31_A           43 AAAHGQIAVVEFLLQNGADPQLLGKGRES-------ALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHV  115 (167)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTCCC-------HHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHCCCHHHHHHHHHcCCCCCCcCCCCCc-------HHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCH
Confidence            34556788999999999999887766554       99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCC
Q 022927          239 DIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVG  285 (290)
Q Consensus       239 ~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin  285 (290)
                      +++++|+++|++++.+|..|+|||++|+..|+.+++++|+++++++.
T Consensus       116 ~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~  162 (167)
T 3v31_A          116 KCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLL  162 (167)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999987643

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.85  E-value=3.1e-21  Score=158.74  Aligned_cols=123  Identities=17%  Similarity=0.104  Sum_probs=104.3

Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHH-HCCCCCcccccCCCcHHHHHHHcCCH
Q 022927          160 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLL-SEGVDANFCDKQGMSLLHLAALFNRT  238 (290)
Q Consensus       160 ~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll-~~g~~vn~~d~~g~TpLh~A~~~g~~  238 (290)
                      ...+..+++++|++.|++++..+..+.+       |||+|+..|+.+++++|+ ..+++++..|..|.||||+|+..|+.
T Consensus        47 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-------~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~  119 (201)
T 3hra_A           47 VHNNDIEIAKALIDRGADINLQNSISDS-------PYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHI  119 (201)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCC-------HHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCH
T ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCCC-------HHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCH
Confidence            3456677888899988888877765554       899999999999999998 56778888888899999999999999


Q ss_pred             HHHHHHHHCC-CCCCCCCCCCCChhhhhhccCC-----HHHHHHHHhCCCCCCCCCC
Q 022927          239 DIAFILMESG-ANMDCKNAQGESPLDCAPVTLQ-----YKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       239 ~iv~~Ll~~G-a~in~~d~~G~TpL~~A~~~g~-----~~iv~~Ll~~GAdin~~~~  289 (290)
                      +++++|+++| ++++.+|..|+||||+|+..++     .+++++|+++|++++.+|.
T Consensus       120 ~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~  176 (201)
T 3hra_A          120 DNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDN  176 (201)
T ss_dssp             HHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCC
Confidence            9999999888 8899999999999999998887     8899999999999888764

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.85  E-value=2.5e-21  Score=178.12  Aligned_cols=123  Identities=15%  Similarity=0.200  Sum_probs=111.6

Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHH
Q 022927          160 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD  239 (290)
Q Consensus       160 ~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~  239 (290)
                      ...+..+++++|++.|++++..+..+.+       |||+|+..|+.+++++|+++|+++|..|..|+||||+|+..|+.+
T Consensus       253 ~~~g~~~~v~~Ll~~~~~~~~~~~~g~t-------~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~  325 (437)
T 1n11_A          253 AQEGHAEMVALLLSKQANGNLGNKSGLT-------PLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIK  325 (437)
T ss_dssp             HHTTCHHHHHHHHTTTCCTTCCCTTCCC-------HHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSH
T ss_pred             HHCCCHHHHHHHHhcCCCCCCCCCCCCC-------HHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHH
Confidence            3455667788888888888776665554       999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          240 IAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       240 iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      ++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++||+++.+|.
T Consensus       326 ~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~  375 (437)
T 1n11_A          326 LVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSS  375 (437)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCS
T ss_pred             HHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCC
Confidence            99999999999999999999999999999999999999999999998764

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.85  E-value=6.7e-22  Score=153.37  Aligned_cols=117  Identities=21%  Similarity=0.172  Sum_probs=103.6

Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHH
Q 022927          160 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD  239 (290)
Q Consensus       160 ~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~  239 (290)
                      ...+..+.+++|++.|++++..+..+.+       |||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+
T Consensus        18 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t-------~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   90 (137)
T 3c5r_A           18 SIKGDIPSVEYLLQNGSDPNVKDHAGWT-------PLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVD   90 (137)
T ss_dssp             HHHTCHHHHHHHHHTTCCSCCCCTTSCC-------HHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCcCCCCCCC-------HHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHHcCCHH
Confidence            4456778889999999999887766555       999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCC
Q 022927          240 IAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNN  283 (290)
Q Consensus       240 iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd  283 (290)
                      ++++|+++|++++.+|..|+|||++|+..+..+++++|.+.+..
T Consensus        91 ~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~s  134 (137)
T 3c5r_A           91 IVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS  134 (137)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC------
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccccC
Confidence            99999999999999999999999999999999999999887654

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.85  E-value=4.7e-22  Score=170.44  Aligned_cols=125  Identities=20%  Similarity=0.172  Sum_probs=107.4

Q ss_pred             CCCCCcccccccCCCCCCCCC----CCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccc--------------
Q 022927          161 GSTSNSNFSSIFNPGQVTNGA----TDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCD--------------  222 (290)
Q Consensus       161 ~s~~~~~~~~Ll~~g~~~~~~----~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d--------------  222 (290)
                      ..+..+++++|++.|++....    +.........|.||||+|+..|+.++|++||++|++++..|              
T Consensus        58 ~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  137 (260)
T 3jxi_A           58 SAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYF  137 (260)
T ss_dssp             BTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSC
T ss_pred             hcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccc
Confidence            467788999999988654321    11111222356779999999999999999999999999998              


Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHH---CCCCCCCCCCCCCChhhhhhccCC---------HHHHHHHHhCCCCCC
Q 022927          223 KQGMSLLHLAALFNRTDIAFILME---SGANMDCKNAQGESPLDCAPVTLQ---------YKMRQKMEEDKNNVG  285 (290)
Q Consensus       223 ~~g~TpLh~A~~~g~~~iv~~Ll~---~Ga~in~~d~~G~TpL~~A~~~g~---------~~iv~~Ll~~GAdin  285 (290)
                      ..|+||||+|+..|+.+++++|++   +|++++.+|..|+||||+|+..++         .+++++|+++||+++
T Consensus       138 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~  212 (260)
T 3jxi_A          138 YFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLF  212 (260)
T ss_dssp             CSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccc
Confidence            689999999999999999999999   999999999999999999998777         799999999999983

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.85  E-value=2e-21  Score=167.72  Aligned_cols=124  Identities=15%  Similarity=0.153  Sum_probs=108.3

Q ss_pred             CCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCC---------------------
Q 022927          159 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVD---------------------  217 (290)
Q Consensus       159 ~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~---------------------  217 (290)
                      .+..+..+++++|++.|++++..+..+.+       |||+|+..|+.+++++|+++|++                     
T Consensus        52 A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t-------pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (282)
T 1oy3_D           52 AAILGEASTVEKLYAAGAGVLVAERGGHT-------ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTS  124 (282)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSSCCCTTSCC-------HHHHHTTTTCHHHHHHHSSSCCSSCCCC----------------
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCCCCCCCC-------HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchh
Confidence            34556778889999999998877765554       89999999999999999987755                     


Q ss_pred             --------------------------CcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC-CCChhhhhhccCC
Q 022927          218 --------------------------ANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQ-GESPLDCAPVTLQ  270 (290)
Q Consensus       218 --------------------------vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~-G~TpL~~A~~~g~  270 (290)
                                                ++..|..|+||||+|+..|+.+++++|+++|++++.++.. |+||||+|+..|+
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~  204 (282)
T 1oy3_D          125 HAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQA  204 (282)
T ss_dssp             -------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             cchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCC
Confidence                                      6777889999999999999999999999999999999854 9999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCC
Q 022927          271 YKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       271 ~~iv~~Ll~~GAdin~~~~  289 (290)
                      .+++++|+++|++++.+|.
T Consensus       205 ~~~v~~Ll~~gad~~~~d~  223 (282)
T 1oy3_D          205 ASVLELLLKAGADPTARMY  223 (282)
T ss_dssp             HHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHHHHHcCCCCccccc
Confidence            9999999999999998874

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.85  E-value=1.7e-21  Score=159.59  Aligned_cols=116  Identities=18%  Similarity=0.184  Sum_probs=108.0

Q ss_pred             CCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCH
Q 022927          159 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRT  238 (290)
Q Consensus       159 ~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~  238 (290)
                      ....+..+++++|++.|++++..+..+.+       |||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus        75 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  147 (192)
T 2rfm_A           75 AVKNNRLGIAEKLLSKGSNVNTKDFSGKT-------PLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRS  147 (192)
T ss_dssp             HHHTTCHHHHHHHHHHTCCTTCCCTTSCC-------HHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCc-------HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            34556778899999999998887766555       99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCC
Q 022927          239 DIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDK  281 (290)
Q Consensus       239 ~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G  281 (290)
                      +++++|+++|++++.+|..|+|||++|+..|+.+++++|+++|
T Consensus       148 ~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          148 EIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             HHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999875

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.85  E-value=1.1e-20  Score=157.86  Aligned_cols=127  Identities=15%  Similarity=0.132  Sum_probs=101.3

Q ss_pred             cccCCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCC-CCcccccCCCcHHHHHHH
Q 022927          156 TARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGV-DANFCDKQGMSLLHLAAL  234 (290)
Q Consensus       156 ~~~~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~-~vn~~d~~g~TpLh~A~~  234 (290)
                      .......+..+++++|++.|++++..+..+.+       |||+|+..|+.+++++|++++. +++..+..|+||||+|+.
T Consensus        29 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~  101 (223)
T 2f8y_A           29 LHLAARYSRSDAAKRLLEASADANIQDNMGRT-------PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR  101 (223)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-------HHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCC-------HHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHH
Confidence            33345666777778888888777766655444       7888888888888888888876 788888888888888888


Q ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          235 FNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       235 ~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      .++.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..|.
T Consensus       102 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  156 (223)
T 2f8y_A          102 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN  156 (223)
T ss_dssp             HTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             hCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence            8888888888888888888888888888888888888888888888888887753

>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=4.5e-22  Score=141.05  Aligned_cols=61  Identities=20%  Similarity=0.343  Sum_probs=55.1

Q ss_pred             ccccccccCCCCCccccccccccccceecCCCCCCcccccCCCCC------Ccccccccchhhhccc
Q 022927            4 HDLQNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIH------TNVRVCADCFNSSSRT   64 (290)
Q Consensus         4 ~~~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~------~~~rvC~~C~~~~~~~   64 (290)
                      ...+||.|+.+|++|+||||||.||+|||+.|+.+++++|.+++.      +++|||+.||..|...
T Consensus        13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~l~~~g~~~p~~~~~~~RVC~~C~~~l~~~   79 (84)
T 1x4u_A           13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFKVPKSSMGATAPEAQRETVFVCASCNQTLSKS   79 (84)
T ss_dssp             CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEEECSTTTSCCCSSCSSCCEEECHHHHHHHHSC
T ss_pred             CCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCceecccccccCccccCCccEECHHHHHHHhcc
Confidence            456899999999999999999999999999999999999988753      6799999999999643

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.85  E-value=3.3e-21  Score=164.49  Aligned_cols=99  Identities=19%  Similarity=0.253  Sum_probs=94.7

Q ss_pred             cccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCChhhhhhcc
Q 022927          190 EVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN-AQGESPLDCAPVT  268 (290)
Q Consensus       190 ~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d-~~G~TpL~~A~~~  268 (290)
                      ..|.||||+|+..|+.+++++||+ |+++|.+|..|+||||+|+..|+.+++++|+++|++++.++ ..|+||||+|+..
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~  121 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY  121 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHT
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc
Confidence            357789999999999999999999 99999999999999999999999999999999999999998 8899999999999


Q ss_pred             CCHHHHHHHHhCCCCCCCCCC
Q 022927          269 LQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       269 g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      |+.+++++|+++|++++.+|.
T Consensus       122 g~~~~v~~Ll~~ga~~~~~d~  142 (244)
T 3ui2_A          122 VRPEVVEALVELGADIEVEDE  142 (244)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCT
T ss_pred             CCHHHHHHHHHCCCCCCCCCC
Confidence            999999999999999998874

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.84  E-value=1.1e-21  Score=167.96  Aligned_cols=122  Identities=18%  Similarity=0.199  Sum_probs=107.4

Q ss_pred             CCCcccccccCCCCCCCCCCC----CCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccC-------------C
Q 022927          163 TSNSNFSSIFNPGQVTNGATD----KPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQ-------------G  225 (290)
Q Consensus       163 ~~~~~~~~Ll~~g~~~~~~~~----~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~-------------g  225 (290)
                      +..+++++|++.|++.+..+.    ........|.||||+|+..|+.+++++|+++|++++..|..             |
T Consensus        57 g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g  136 (256)
T 2etb_A           57 GVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFG  136 (256)
T ss_dssp             TBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSC
T ss_pred             chHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCC
Confidence            778999999999887764331    00111234677999999999999999999999999999876             9


Q ss_pred             CcHHHHHHHcCCHHHHHHHHH---CCCCCCCCCCCCCChhhhhhc--cCCHH-------HHHHHHhCCCCC
Q 022927          226 MSLLHLAALFNRTDIAFILME---SGANMDCKNAQGESPLDCAPV--TLQYK-------MRQKMEEDKNNV  284 (290)
Q Consensus       226 ~TpLh~A~~~g~~~iv~~Ll~---~Ga~in~~d~~G~TpL~~A~~--~g~~~-------iv~~Ll~~GAdi  284 (290)
                      +||||+|+..|+.+++++|++   +|++++.+|..|+||||+|+.  .++.+       ++++|+++||++
T Consensus       137 ~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~  207 (256)
T 2etb_A          137 ELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARL  207 (256)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCc
Confidence            999999999999999999999   999999999999999999998  88888       999999999999

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.84  E-value=1.7e-21  Score=176.02  Aligned_cols=120  Identities=23%  Similarity=0.315  Sum_probs=108.3

Q ss_pred             CCCC-CCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCC
Q 022927          159 SRGS-TSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR  237 (290)
Q Consensus       159 ~~~s-~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~  237 (290)
                      .+.. ++...+++|+..|++++..+.     ...|.||||+|+..|+.+++++||++|+++|..|..|+||||+|+..|+
T Consensus       206 Aa~~~g~~~~v~~LL~~Gadvn~~~~-----~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~  280 (368)
T 3jue_A          206 ASGHPPSLPTMADALAHGADVNWVNG-----GQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGH  280 (368)
T ss_dssp             HTSSSCCHHHHHHHHHTTCCTTCCCT-----TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             HHHccCCHHHHHHHHHcCCCCCcccc-----ccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCc
Confidence            3445 788899999999999987762     1234459999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCC
Q 022927          238 TDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNN  283 (290)
Q Consensus       238 ~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd  283 (290)
                      .+++++||++|++++.+|..|+||||+|+..|+.+++++|+++|+.
T Consensus       281 ~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~  326 (368)
T 3jue_A          281 TGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR  326 (368)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999988753

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.84  E-value=1e-21  Score=169.81  Aligned_cols=132  Identities=17%  Similarity=0.132  Sum_probs=111.4

Q ss_pred             cccCCCCCCCcccccccCCCCCCCCCCCCC-------CccccccchHHHHHHHcCCHHHHHHHHH---CCCCCcccccCC
Q 022927          156 TARSRGSTSNSNFSSIFNPGQVTNGATDKP-------RMEYEVNGEGLRDAIKNGDAAAVKKLLS---EGVDANFCDKQG  225 (290)
Q Consensus       156 ~~~~~~s~~~~~~~~Ll~~g~~~~~~~~~~-------~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~---~g~~vn~~d~~g  225 (290)
                      .......+..+++++|++.|++++..+..+       ......|.||||+|+..|+.+++++||+   +|+++|.+|..|
T Consensus       105 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g  184 (273)
T 2pnn_A          105 LHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVG  184 (273)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTS
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCC
Confidence            333455677889999999999998877521       1111246679999999999999999999   999999999999


Q ss_pred             CcHHHHHHHcCC---------HHHHHHHHHCCCCCC-------CCCCCCCChhhhhhccCCHHHHHHHHhCCC-CCCCC
Q 022927          226 MSLLHLAALFNR---------TDIAFILMESGANMD-------CKNAQGESPLDCAPVTLQYKMRQKMEEDKN-NVGST  287 (290)
Q Consensus       226 ~TpLh~A~~~g~---------~~iv~~Ll~~Ga~in-------~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA-din~~  287 (290)
                      +||||+|+..|+         .+++++|+++|++++       .+|..|+||||+|+..|+.+++++|+++|| |+...
T Consensus       185 ~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~  263 (273)
T 2pnn_A          185 NTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECR  263 (273)
T ss_dssp             CCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC-----
T ss_pred             CcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhh
Confidence            999999999998         899999999999997       489999999999999999999999999999 66543

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.84  E-value=4.8e-21  Score=167.22  Aligned_cols=124  Identities=23%  Similarity=0.236  Sum_probs=110.6

Q ss_pred             CCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCH
Q 022927          159 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRT  238 (290)
Q Consensus       159 ~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~  238 (290)
                      ....+..+.+++|++.|++++..+..+.+       |||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.
T Consensus        47 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-------~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~  119 (299)
T 1s70_B           47 ACSSGDTEEVLRLLERGADINYANVDGLT-------ALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYL  119 (299)
T ss_dssp             HHHHTCHHHHHHHHHHCCCTTCBCTTCCB-------HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHcCCHHHHHHHHHcCCCCcccCCCCCC-------HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH
Confidence            35667888999999999998887766554       99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCCCCCCC------------------------------------------------------------CC
Q 022927          239 DIAFILMESGANMDCKNA------------------------------------------------------------QG  258 (290)
Q Consensus       239 ~iv~~Ll~~Ga~in~~d~------------------------------------------------------------~G  258 (290)
                      +++++|+++|++++..|.                                                            .|
T Consensus       120 ~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g  199 (299)
T 1s70_B          120 DIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSG  199 (299)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTC
T ss_pred             HHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCC
Confidence            999999999999987764                                                            46


Q ss_pred             CChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          259 ESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       259 ~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      .||||+|+..|+.+++++|+++|+++|.+|.
T Consensus       200 ~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~  230 (299)
T 1s70_B          200 GTALHVAAAKGYTEVLKLLIQARYDVNIKDY  230 (299)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHTTTCCTTCCCT
T ss_pred             CCHHHHHHHCCcHHHHHHHHHcCCCCCCcCC
Confidence            6777888888999999999999999998864

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.84  E-value=5.7e-21  Score=160.81  Aligned_cols=126  Identities=15%  Similarity=0.117  Sum_probs=108.5

Q ss_pred             cCCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCccccc-------------C
Q 022927          158 RSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDK-------------Q  224 (290)
Q Consensus       158 ~~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~-------------~  224 (290)
                      .....+..+++++|++.|++.......  .....|.||||+|+..|+.+++++|+++|++++..+.             .
T Consensus        43 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~  120 (232)
T 2rfa_A           43 IAALYDNLEAAMVLMEAAPELVFEPMT--SELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYY  120 (232)
T ss_dssp             HHHHTTCHHHHHHHHHHCGGGGGCCCC--STTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCC
T ss_pred             HHHHcCCHHHHHHHHHcCchhcccccc--ccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccC
Confidence            334567788999999999876322211  1122455699999999999999999999999998865             7


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHH----HHHHhCCCCCC
Q 022927          225 GMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMR----QKMEEDKNNVG  285 (290)
Q Consensus       225 g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv----~~Ll~~GAdin  285 (290)
                      |+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++    ++|+++|++++
T Consensus       121 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~  185 (232)
T 2rfa_A          121 GEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDH  185 (232)
T ss_dssp             CSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCS
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchh
Confidence            99999999999999999999999999999999999999999999999988    99999999884

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.84  E-value=5.8e-21  Score=169.69  Aligned_cols=131  Identities=17%  Similarity=0.171  Sum_probs=116.9

Q ss_pred             CCCCCCCcccccccCCCCCCCCCCCCCCcc-----------------------------------------------ccc
Q 022927          159 SRGSTSNSNFSSIFNPGQVTNGATDKPRME-----------------------------------------------YEV  191 (290)
Q Consensus       159 ~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~-----------------------------------------------~~~  191 (290)
                      ....+..+++++|++.|++++..+..+.+.                                               ...
T Consensus       131 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  210 (351)
T 3utm_A          131 AASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQS  210 (351)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTT
T ss_pred             HHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCC
Confidence            345667788999999999888766554332                                               245


Q ss_pred             cchHHHHHHHc---CCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhcc
Q 022927          192 NGEGLRDAIKN---GDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVT  268 (290)
Q Consensus       192 ~~t~Lh~A~~~---g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~  268 (290)
                      +.||||+|+..   +..+++++|++.|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..
T Consensus       211 ~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~  290 (351)
T 3utm_A          211 HETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALA  290 (351)
T ss_dssp             CCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc
Confidence            67899999999   558999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCCCCCC
Q 022927          269 LQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       269 g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      |+.+++++|+++|||++..|.
T Consensus       291 ~~~~~v~~Ll~~gad~~~~~~  311 (351)
T 3utm_A          291 GHLQTCRLLLSYGSDPSIISL  311 (351)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCT
T ss_pred             CcHHHHHHHHHcCCCCCCcCC
Confidence            999999999999999998874

>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1

Probab=99.84  E-value=1.2e-21  Score=139.46  Aligned_cols=61  Identities=21%  Similarity=0.410  Sum_probs=56.8

Q ss_pred             cccccccccCCCCCccccccccccccceecCCCCCCcccccCCCCCCcccccccchhhhccc
Q 022927            3 HHDLQNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRT   64 (290)
Q Consensus         3 ~~~~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~   64 (290)
                      |....||.|+.+|++|+||||||.||+|||+.|+.+++++|.++ .+++|||+.||..+...
T Consensus         7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g-~~~~RVC~~C~~~l~~~   67 (88)
T 1wfk_A            7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAG-NTQQKVCKQCHTILTRG   67 (88)
T ss_dssp             CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTT-SEEEEECHHHHHHHHHC
T ss_pred             CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccC-CCcCEECHHHHHHHHhc
Confidence            56678999999999999999999999999999999999999988 68999999999999754

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.84  E-value=3.4e-22  Score=163.90  Aligned_cols=117  Identities=14%  Similarity=0.079  Sum_probs=105.5

Q ss_pred             cccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCC------HHHHHHHHHCCCCCcccccCCC-cHHHHHHHcC--
Q 022927          166 SNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGD------AAAVKKLLSEGVDANFCDKQGM-SLLHLAALFN--  236 (290)
Q Consensus       166 ~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~------~~~v~~Ll~~g~~vn~~d~~g~-TpLh~A~~~g--  236 (290)
                      +++++|++.|++++..+..+.+       |||+|+..++      .+++++||++|+++|.+|..|+ ||||+|+..+  
T Consensus        56 ~iv~~Ll~~Gadvn~~d~~g~T-------pLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~  128 (186)
T 3t8k_A           56 KISMFLINKGADIKSRTKEGTT-------LFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVD  128 (186)
T ss_dssp             HHHHHHHHTTCCSSCCCTTCCC-------THHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSC
T ss_pred             HHHHHHHHCCCCCCCCCCCCCc-------HHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCC
Confidence            4789999999999998877666       8999999987      6889999999999999999999 9999999854  


Q ss_pred             ---CHHHHHHHHH-CCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          237 ---RTDIAFILME-SGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       237 ---~~~iv~~Ll~-~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                         +.+++++|++ +|++++.+|..|+||||+|+..|+.+++++|+++..+.+.++.
T Consensus       129 ~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~~~  185 (186)
T 3t8k_A          129 ENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKEN  185 (186)
T ss_dssp             HHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCCC-
T ss_pred             hhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhcccC
Confidence               4569999999 9999999999999999999999999999999998777776653

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.84  E-value=1.9e-21  Score=171.32  Aligned_cols=126  Identities=21%  Similarity=0.195  Sum_probs=109.2

Q ss_pred             CCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHc---CCHHHHHHHHHCCCCCcccccCCCcHHHHHHHc
Q 022927          159 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKN---GDAAAVKKLLSEGVDANFCDKQGMSLLHLAALF  235 (290)
Q Consensus       159 ~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~---g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~  235 (290)
                      ....++...++.|+..|.+++...... .....|.||||+|+..   |+.+++++||++|+++|.+|..|+||||+|+..
T Consensus       158 A~~~g~~~~v~~ll~~g~d~~~~~~~~-~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~  236 (301)
T 2b0o_E          158 AICNRDLLSVLEAFANGQDFGQPLPGP-DAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALY  236 (301)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTSCEECS-SSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHT
T ss_pred             hhhccCHHHHHHHHhcCCcccccCCCc-ccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHc
Confidence            345666777888899998887631110 0123456799999997   899999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCC
Q 022927          236 NRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVG  285 (290)
Q Consensus       236 g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin  285 (290)
                      |+.+++++||++|++++.+|..|+||||+|+..|+.+++++|+++|++.+
T Consensus       237 g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~~g  286 (301)
T 2b0o_E          237 NQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTF  286 (301)
T ss_dssp             TCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCC
Confidence            99999999999999999999999999999999999999999999998754

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.84  E-value=1.1e-21  Score=169.63  Aligned_cols=125  Identities=18%  Similarity=0.199  Sum_probs=107.2

Q ss_pred             CCCCcccccccCCCCCCCCC----CCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCccccc--------------
Q 022927          162 STSNSNFSSIFNPGQVTNGA----TDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDK--------------  223 (290)
Q Consensus       162 s~~~~~~~~Ll~~g~~~~~~----~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~--------------  223 (290)
                      .+..+++++|++.|++.+..    +.........|.||||+|+..|+.+++++||++|++++..+.              
T Consensus        67 ~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  146 (273)
T 2pnn_A           67 NGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFY  146 (273)
T ss_dssp             TTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCC
T ss_pred             cCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcccccccccccccccccc
Confidence            47788999999988653221    111111123566799999999999999999999999999987              


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHH---CCCCCCCCCCCCCChhhhhhccCC---------HHHHHHHHhCCCCCCC
Q 022927          224 QGMSLLHLAALFNRTDIAFILME---SGANMDCKNAQGESPLDCAPVTLQ---------YKMRQKMEEDKNNVGS  286 (290)
Q Consensus       224 ~g~TpLh~A~~~g~~~iv~~Ll~---~Ga~in~~d~~G~TpL~~A~~~g~---------~~iv~~Ll~~GAdin~  286 (290)
                      .|+||||+|+..|+.+++++|++   +|++++.+|..|+||||+|+..|+         .+++++|+++|+++|.
T Consensus       147 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~  221 (273)
T 2pnn_A          147 FGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHP  221 (273)
T ss_dssp             SCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhccc
Confidence            79999999999999999999999   999999999999999999999888         8999999999999874

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.84  E-value=2.7e-21  Score=147.23  Aligned_cols=107  Identities=19%  Similarity=0.197  Sum_probs=95.8

Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHH
Q 022927          160 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD  239 (290)
Q Consensus       160 ~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~  239 (290)
                      ...+..+.+++|++.|.+++..+..+.+       |||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+
T Consensus        15 ~~~~~~~~v~~ll~~~~~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~   87 (123)
T 3aaa_C           15 LKNGDLDEVKDYVAKGEDVNRTLEGGRK-------PLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   87 (123)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTSCCTTSSC-------HHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHcCCHHHHHHHHHcCCCcCccCCCCCc-------HHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHH
Confidence            4456778889999999998887766555       999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHH
Q 022927          240 IAFILMESGANMDCKNAQGESPLDCAPVTLQYKM  273 (290)
Q Consensus       240 iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~i  273 (290)
                      ++++|+++|++++.+|..|+||||+|...+..++
T Consensus        88 ~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~l  121 (123)
T 3aaa_C           88 CVKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL  121 (123)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHHH
T ss_pred             HHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHHH
Confidence            9999999999999999999999999965444433

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.84  E-value=1e-20  Score=141.47  Aligned_cols=87  Identities=25%  Similarity=0.395  Sum_probs=84.3

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCC
Q 022927          191 VNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQ  270 (290)
Q Consensus       191 ~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~  270 (290)
                      .++|+||+|+..|+.+++++|++.|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus        23 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~  102 (110)
T 2zgd_A           23 DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGN  102 (110)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHcCC
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 022927          271 YKMRQKM  277 (290)
Q Consensus       271 ~~iv~~L  277 (290)
                      .+++++|
T Consensus       103 ~~~~~~L  109 (110)
T 2zgd_A          103 EDLAEIL  109 (110)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999987

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.84  E-value=1.4e-20  Score=167.20  Aligned_cols=122  Identities=16%  Similarity=0.194  Sum_probs=109.4

Q ss_pred             CCCCCCcccccccC-CCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCH
Q 022927          160 RGSTSNSNFSSIFN-PGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRT  238 (290)
Q Consensus       160 ~~s~~~~~~~~Ll~-~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~  238 (290)
                      +..++.+.++.|+. .+.+++..+..+.+       |||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.
T Consensus        32 ~~~g~~~~v~~ll~~~~~~~~~~d~~g~t-------~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~  104 (351)
T 3utm_A           32 ARSGNEEKLMALLTPLNVNCHASDGRKST-------PLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHY  104 (351)
T ss_dssp             HHHTCHHHHHHHCCTTTTTCCCSSTTCCC-------HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHcCCHHHHHHHHHhcCCCcccCCCCCCC-------HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCH
Confidence            34455666655554 47777777666555       99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCC
Q 022927          239 DIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT  288 (290)
Q Consensus       239 ~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~  288 (290)
                      +++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++..+
T Consensus       105 ~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  154 (351)
T 3utm_A          105 EVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVN  154 (351)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccc
Confidence            99999999999999999999999999999999999999999999998765

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.84  E-value=1.4e-20  Score=154.81  Aligned_cols=123  Identities=17%  Similarity=0.192  Sum_probs=110.0

Q ss_pred             CCCCCCcccccccCCCC-CCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCH
Q 022927          160 RGSTSNSNFSSIFNPGQ-VTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRT  238 (290)
Q Consensus       160 ~~s~~~~~~~~Ll~~g~-~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~  238 (290)
                      +..++.+.++.|+..+. +++..+..+.       ||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.
T Consensus        13 ~~~g~~~~v~~ll~~~~~~~~~~~~~g~-------t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~   85 (201)
T 3hra_A           13 ANQRDTKKVKEILQDTTYQVDEVDTEGN-------TPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRT   85 (201)
T ss_dssp             HHTTCHHHHHHHHTCTTCCTTCCCTTSC-------CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHhccHHHHHHHHHcCCCCCCCCCCCCC-------CHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            44566677777777665 7777666554       499999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH-HCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCC-CCCCCCCC
Q 022927          239 DIAFILM-ESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDK-NNVGSTTS  289 (290)
Q Consensus       239 ~iv~~Ll-~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G-Adin~~~~  289 (290)
                      +++++|+ ..+++++..|..|.||||+|+..|+.+++++|+++| ++++..|.
T Consensus        86 ~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  138 (201)
T 3hra_A           86 EILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQND  138 (201)
T ss_dssp             HHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCT
T ss_pred             HHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCC
Confidence            9999999 668899999999999999999999999999999999 99998764

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.84  E-value=5.1e-21  Score=170.33  Aligned_cols=111  Identities=19%  Similarity=0.219  Sum_probs=96.0

Q ss_pred             cccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHC-CCCCcccccCCCcHHHHHHHcCCHHHHHHH
Q 022927          166 SNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSE-GVDANFCDKQGMSLLHLAALFNRTDIAFIL  244 (290)
Q Consensus       166 ~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~-g~~vn~~d~~g~TpLh~A~~~g~~~iv~~L  244 (290)
                      .++++|++.|++++..+..+.       ||||+|+..|+.+++++|++. |+++|.+|..|+||||+|+..|+.+++++|
T Consensus       220 ~i~~lLl~~gad~n~~d~~g~-------t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~L  292 (337)
T 4g8k_A          220 AITHLLLDHGADVNVRGERGK-------TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELL  292 (337)
T ss_dssp             HHHHHHHHTTCCTTCCCGGGC-------CHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCcCCCCC-------CHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            456788899998887765544       599999999999999999985 899999999999999999999999999999


Q ss_pred             HHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCC
Q 022927          245 MESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT  288 (290)
Q Consensus       245 l~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~  288 (290)
                      |++||++|.+     +|||+|+..|+.++|++||++|||+|...
T Consensus       293 l~~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~GA~~d~~~  331 (337)
T 4g8k_A          293 CKRGASTDCG-----DLVMTARRNYDHSLVKVLLSHGAKEDFHP  331 (337)
T ss_dssp             HTTSCSSTTC-----CHHHHHHHTTCHHHHHHHHHTTCCC----
T ss_pred             HHCCCCCCCC-----CHHHHHHHcCCHHHHHHHHHCcCCCCCCC
Confidence            9999999864     59999999999999999999999998753

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.84  E-value=3.3e-21  Score=167.50  Aligned_cols=123  Identities=18%  Similarity=0.200  Sum_probs=82.0

Q ss_pred             CCCCCCCcccccccCCCC-CCCCCCCCCCccc-------------------------------cccchHHHHHHHcCCHH
Q 022927          159 SRGSTSNSNFSSIFNPGQ-VTNGATDKPRMEY-------------------------------EVNGEGLRDAIKNGDAA  206 (290)
Q Consensus       159 ~~~s~~~~~~~~Ll~~g~-~~~~~~~~~~~~~-------------------------------~~~~t~Lh~A~~~g~~~  206 (290)
                      ....+..+++++|++.|+ +++..+..+.++.                               ..|.||||+|+..|+.+
T Consensus       118 A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~  197 (276)
T 4hbd_A          118 SVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVD  197 (276)
T ss_dssp             HHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred             HHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHH
Confidence            345667778888888887 7777666554421                               12556666666666666


Q ss_pred             HHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCC
Q 022927          207 AVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILME-SGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDK  281 (290)
Q Consensus       207 ~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~-~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G  281 (290)
                      ++++||++|+++|.+|..|+||||+|+..|+.+++++|++ +|++++.+|..|+||||+|+..|+.+++++|++++
T Consensus       198 ~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          198 VVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             HHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            6666666666666666666666666666666666666666 56666666666666666666666666666666653

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.84  E-value=1.4e-20  Score=159.11  Aligned_cols=130  Identities=16%  Similarity=0.127  Sum_probs=74.1

Q ss_pred             CCCCCCCcccccccCCCC----CCCCCCCCCCccc--------------------------cccchHHHHHHHcCCHHHH
Q 022927          159 SRGSTSNSNFSSIFNPGQ----VTNGATDKPRMEY--------------------------EVNGEGLRDAIKNGDAAAV  208 (290)
Q Consensus       159 ~~~s~~~~~~~~Ll~~g~----~~~~~~~~~~~~~--------------------------~~~~t~Lh~A~~~g~~~~v  208 (290)
                      ....+..+.++.|++.+.    +++..+..+.++.                          ..|.||||+|+..|+.+++
T Consensus        15 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v   94 (236)
T 1ikn_D           15 AIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASV   94 (236)
T ss_dssp             HHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             HHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHH
Confidence            345567778888887765    4555555443311                          1234455555555555555


Q ss_pred             HHHHHCCCC------CcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCChhhhhhccCCHHHHHHHHhCC
Q 022927          209 KKLLSEGVD------ANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNA-QGESPLDCAPVTLQYKMRQKMEEDK  281 (290)
Q Consensus       209 ~~Ll~~g~~------vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~-~G~TpL~~A~~~g~~~iv~~Ll~~G  281 (290)
                      ++|++.|++      ++..|..|+||||+|+..|+.+++++|+++|++++.++. .|+||||+|+..|+.+++++|+++|
T Consensus        95 ~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g  174 (236)
T 1ikn_D           95 GVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG  174 (236)
T ss_dssp             HHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred             HHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            555555443      234444556666666666666666666666666666665 6666666666666666666666666


Q ss_pred             CCCCCCC
Q 022927          282 NNVGSTT  288 (290)
Q Consensus       282 Adin~~~  288 (290)
                      |+++..|
T Consensus       175 a~~~~~~  181 (236)
T 1ikn_D          175 ADVNRVT  181 (236)
T ss_dssp             CCSCCCC
T ss_pred             CCCCccc
Confidence            6666554

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.84  E-value=9.7e-21  Score=168.45  Aligned_cols=117  Identities=14%  Similarity=0.053  Sum_probs=93.6

Q ss_pred             cccccccCCCCCCCC-CCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcC--------
Q 022927          166 SNFSSIFNPGQVTNG-ATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFN--------  236 (290)
Q Consensus       166 ~~~~~Ll~~g~~~~~-~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g--------  236 (290)
                      .++++|++.|++++. .+..+.+       |||+|+..|+.++|++||++|+++|.+|..|+||||+|+..|        
T Consensus       111 ~~~~~l~~~g~dvn~~~d~~g~T-------pLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~  183 (327)
T 1sw6_A          111 EVNDAFPNTQLNLNIPVDEHGNT-------PLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTF  183 (327)
T ss_dssp             HHHHHCTTSCCCSCSCCSTTCCC-------HHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCH
T ss_pred             HHHHHHHhcCCCcccccCCCCCc-------HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHH
Confidence            455777888888887 5665554       888888888888888888888888888877888877777654        


Q ss_pred             ---------------------------------CHHHHHHHHHCCC----------------------------------
Q 022927          237 ---------------------------------RTDIAFILMESGA----------------------------------  249 (290)
Q Consensus       237 ---------------------------------~~~iv~~Ll~~Ga----------------------------------  249 (290)
                                                       +.+++++|++.++                                  
T Consensus       184 ~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~  263 (327)
T 1sw6_A          184 EALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSIL  263 (327)
T ss_dssp             HHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHH
T ss_pred             HHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhH
Confidence                                             4455566665532                                  


Q ss_pred             -----------CCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          250 -----------NMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       250 -----------~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                                 ++|.+|..|+||||+|+..|+.+++++|+++|||++++|.
T Consensus       264 ~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~  314 (327)
T 1sw6_A          264 ENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANK  314 (327)
T ss_dssp             HHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCC
Confidence                       5788899999999999999999999999999999999874

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.84  E-value=1.2e-20  Score=158.18  Aligned_cols=127  Identities=20%  Similarity=0.144  Sum_probs=110.6

Q ss_pred             CCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCC--CCCcccccCCCcHHHHHHHcC
Q 022927          159 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEG--VDANFCDKQGMSLLHLAALFN  236 (290)
Q Consensus       159 ~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g--~~vn~~d~~g~TpLh~A~~~g  236 (290)
                      ....+..+++++|++.|.+.+....    ....|.||||+|+..|+.+++++|+++|  ++++..|..|+||||+|+..|
T Consensus        43 A~~~~~~~~v~~Ll~~~~~~~~~~~----~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~  118 (228)
T 2dzn_A           43 SVSFQAHEITSFLLSKMENVNLDDY----PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKK  118 (228)
T ss_dssp             HHHTTCHHHHHHHHHTCTTCCGGGC----CCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHhcccccccccc----CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcC
Confidence            3456677889999999954433220    1123456999999999999999999998  899999999999999999999


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCC-CCCCCCCC
Q 022927          237 RTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDK-NNVGSTTS  289 (290)
Q Consensus       237 ~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G-Adin~~~~  289 (290)
                      +.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++| ++++.+|.
T Consensus       119 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~  172 (228)
T 2dzn_A          119 WFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK  172 (228)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCT
T ss_pred             CHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCC
Confidence            999999999999999999999999999999999999999999999 99998764

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.84  E-value=1.2e-20  Score=164.65  Aligned_cols=121  Identities=17%  Similarity=0.141  Sum_probs=105.6

Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHH
Q 022927          160 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD  239 (290)
Q Consensus       160 ~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~  239 (290)
                      ...+..+++++|++.|++++..+        .|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+
T Consensus       133 ~~~~~~~~v~~Ll~~g~~~~~~~--------~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~  204 (285)
T 3d9h_A          133 CVSGSWDCVNLLLQHGASVQPES--------DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRA  204 (285)
T ss_dssp             HHHTCHHHHHHHHHTTCCSSCSC--------TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHH
T ss_pred             HHcCHHHHHHHHHHCCCCCCCCC--------CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHH
Confidence            34456677788888877765432        2456999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          240 IAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       240 iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      ++++|+++|++++. |..|+||||+|+..|+.+++++|+++|+|++.+|.
T Consensus       205 ~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~  253 (285)
T 3d9h_A          205 CVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNA  253 (285)
T ss_dssp             HHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence            99999999999995 88999999999999999999999999999998874

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.84  E-value=1.7e-20  Score=158.33  Aligned_cols=124  Identities=17%  Similarity=0.256  Sum_probs=109.0

Q ss_pred             CCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCC-CCCcccccCCCcHHHHHHHcCC
Q 022927          159 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEG-VDANFCDKQGMSLLHLAALFNR  237 (290)
Q Consensus       159 ~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g-~~vn~~d~~g~TpLh~A~~~g~  237 (290)
                      ....+..+++++|++.|++++..+..+.+       |||+|+..|+.+++++|++.| .+++..|..|+||||+|+..++
T Consensus        51 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-------~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~  123 (237)
T 3b7b_A           51 AAENNHLEAVKYLIKAGALVDPKDAEGST-------CLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH  123 (237)
T ss_dssp             HHHTTCHHHHHHHHTTTCCCCCCCTTSCC-------HHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHhCCHHHHHHHHhCCCCCCCCCCCCCc-------HHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCC
Confidence            34456778889999999888777665554       899999999999999999998 8899999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          238 TDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       238 ~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      .+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..|.
T Consensus       124 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~  175 (237)
T 3b7b_A          124 VDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNI  175 (237)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCT
T ss_pred             HHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCC
Confidence            9999999999999999999999999999999999999999999999988764

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.83  E-value=1.6e-21  Score=167.21  Aligned_cols=127  Identities=17%  Similarity=0.091  Sum_probs=110.7

Q ss_pred             cCCCCCCCcccccccCCCCCCCCCCCC-------CCccccccchHHHHHHHcCCHHHHHHHHH---CCCCCcccccCCCc
Q 022927          158 RSRGSTSNSNFSSIFNPGQVTNGATDK-------PRMEYEVNGEGLRDAIKNGDAAAVKKLLS---EGVDANFCDKQGMS  227 (290)
Q Consensus       158 ~~~~s~~~~~~~~Ll~~g~~~~~~~~~-------~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~---~g~~vn~~d~~g~T  227 (290)
                      .....+..+++++|++.|++++..+..       .......|.||||+|+..|+.+++++||+   +|+++|.+|..|+|
T Consensus        99 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~T  178 (260)
T 3jxi_A           99 IAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNT  178 (260)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCC
T ss_pred             HHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCc
Confidence            335567788999999999999887731       01111246679999999999999999999   99999999999999


Q ss_pred             HHHHHHHcCC---------HHHHHHHHHCCCCC-------CCCCCCCCChhhhhhccCCHHHHHHHHhCCCCC
Q 022927          228 LLHLAALFNR---------TDIAFILMESGANM-------DCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNV  284 (290)
Q Consensus       228 pLh~A~~~g~---------~~iv~~Ll~~Ga~i-------n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdi  284 (290)
                      |||+|+..++         .+++++|+++|+++       +.+|..|+||||+|+..|+.+++++|+++|++.
T Consensus       179 pLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  251 (260)
T 3jxi_A          179 VLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIAD  251 (260)
T ss_dssp             HHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCc
Confidence            9999999888         79999999999999       679999999999999999999999999998764

>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}

Probab=99.83  E-value=5.8e-22  Score=140.38  Aligned_cols=61  Identities=26%  Similarity=0.526  Sum_probs=56.5

Q ss_pred             ccccccccCCCCCccccccccccccceecCCCCCCcccccCCCCCCcccccccchhhhccc
Q 022927            4 HDLQNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRT   64 (290)
Q Consensus         4 ~~~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~   64 (290)
                      ...+|+.|+++|++|+||||||.||+|||+.||.++..+|..++.+++|||+.||..+...
T Consensus        20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~~~   80 (84)
T 1z2q_A           20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALRSS   80 (84)
T ss_dssp             TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHHTS
T ss_pred             CCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHhhc
Confidence            4568999999999999999999999999999999999999988789999999999998643

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.83  E-value=1.3e-21  Score=176.00  Aligned_cols=119  Identities=17%  Similarity=0.218  Sum_probs=110.1

Q ss_pred             CCCC--CCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCC-----CcccccCCCcHHHHH
Q 022927          160 RGST--SNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVD-----ANFCDKQGMSLLHLA  232 (290)
Q Consensus       160 ~~s~--~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~-----vn~~d~~g~TpLh~A  232 (290)
                      ...+  ..+++++|++.|++++..+..+.+       |||+|+..|+.+++++|+++|++     +|..|..|+||||+|
T Consensus       146 ~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t-------~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A  218 (364)
T 3ljn_A          146 VGLGPEYLEMIKILVQLGASPTAKDKADET-------PLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWA  218 (364)
T ss_dssp             HHSCGGGHHHHHHHHHHTCCTTCCCTTSCC-------HHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHH
T ss_pred             HHcCCchHHHHHHHHHcCCCCcccCCCCCC-------HHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHH
Confidence            3445  678899999999999888766555       99999999999999999999998     999999999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCC
Q 022927          233 ALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVG  285 (290)
Q Consensus       233 ~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin  285 (290)
                      +..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++
T Consensus       219 ~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~  271 (364)
T 3ljn_A          219 ILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFL  271 (364)
T ss_dssp             HTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchh
Confidence            99999999999999999999999999999999999999999999999998763

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.83  E-value=1.8e-21  Score=166.61  Aligned_cols=129  Identities=16%  Similarity=0.108  Sum_probs=112.2

Q ss_pred             cccCCCCCCCcccccccCCCCCCCCCCCCCCcc------ccccchHHHHHHHcCCHHHHHHHHH---CCCCCcccccCCC
Q 022927          156 TARSRGSTSNSNFSSIFNPGQVTNGATDKPRME------YEVNGEGLRDAIKNGDAAAVKKLLS---EGVDANFCDKQGM  226 (290)
Q Consensus       156 ~~~~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~------~~~~~t~Lh~A~~~g~~~~v~~Ll~---~g~~vn~~d~~g~  226 (290)
                      .......+..+++++|++.|++++..+......      ...|.||||+|+..|+.+++++|++   +|+++|.+|..|+
T Consensus        94 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~  173 (256)
T 2etb_A           94 LHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGN  173 (256)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCC
Confidence            333455677889999999999998877641111      1126679999999999999999999   9999999999999


Q ss_pred             cHHHHHHH--cCCHH-------HHHHHHHCCCCC-------CCCCCCCCChhhhhhccCCHHHHHHHHhCCCCC
Q 022927          227 SLLHLAAL--FNRTD-------IAFILMESGANM-------DCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNV  284 (290)
Q Consensus       227 TpLh~A~~--~g~~~-------iv~~Ll~~Ga~i-------n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdi  284 (290)
                      ||||+|+.  .++.+       ++++|+++|+++       +.+|..|+||||+|+..|+.+++++|+++|++.
T Consensus       174 TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  247 (256)
T 2etb_A          174 TVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSG  247 (256)
T ss_dssp             CHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence            99999999  78888       999999999999       999999999999999999999999999998753

>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1

Probab=99.83  E-value=3.8e-22  Score=137.49  Aligned_cols=58  Identities=36%  Similarity=0.728  Sum_probs=54.4

Q ss_pred             cccccccCCCCCccccccccccccceecCCCCCCcccccCCCCCCcccccccchhhhc
Q 022927            5 DLQNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSS   62 (290)
Q Consensus         5 ~~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~   62 (290)
                      ..+|+.|+++|++++||||||.||+|||+.|+.+++++|.+|..+++|||+.||..+.
T Consensus        11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~   68 (73)
T 1vfy_A           11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVCDSCFEDYE   68 (73)
T ss_dssp             CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEEEEEGGGTEEEEEEECHHHHHHHH
T ss_pred             CCcccCCCCccCCccccccCCCCCEEEcccccCCeEEcccCCCCCCCEECHHHHHHHH
Confidence            3579999999999999999999999999999999999999987789999999999875

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.83  E-value=2.5e-20  Score=157.34  Aligned_cols=124  Identities=20%  Similarity=0.231  Sum_probs=110.9

Q ss_pred             CCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCC----CCcccccCCCcHHHHHHH
Q 022927          159 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGV----DANFCDKQGMSLLHLAAL  234 (290)
Q Consensus       159 ~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~----~vn~~d~~g~TpLh~A~~  234 (290)
                      ....+..+++++|++.|++++..+..+.+       |||+|+..|+.+++++|++.+.    +++..|..|+||||+|+.
T Consensus        53 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-------~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~  125 (241)
T 1k1a_A           53 AVITTLPSVVRLLVTAGASPMALDRHGQT-------AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVN  125 (241)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCC-------HHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCccccCCCCCC-------HHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHH
Confidence            34566778889999999998877665554       8999999999999999999987    888899999999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCCC-CCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          235 FNRTDIAFILMESGANMDCKN-AQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       235 ~g~~~iv~~Ll~~Ga~in~~d-~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      .|+.+++++|+++|++++..+ ..|+||||+|+..|+.+++++|+++|++++..|.
T Consensus       126 ~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  181 (241)
T 1k1a_A          126 TECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMY  181 (241)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCT
T ss_pred             cCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence            999999999999999999998 7899999999999999999999999999998764

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.83  E-value=1.9e-20  Score=163.32  Aligned_cols=121  Identities=18%  Similarity=0.152  Sum_probs=82.9

Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHH
Q 022927          160 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD  239 (290)
Q Consensus       160 ~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~  239 (290)
                      +..+..+++++|++.|.+++..+..+.+       |||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+
T Consensus        67 a~~g~~~~v~~Ll~~g~~~~~~~~~g~t-------~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~  139 (285)
T 3d9h_A           67 AIHGHQLSLRNLISQGWAVNIITADHVS-------PLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWD  139 (285)
T ss_dssp             HHTTCHHHHHHHHHTTCCSCEECTTCCC-------HHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHH
T ss_pred             HHcCCHHHHHHHHHCCCCCCCcCCCCCC-------HHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHH
Confidence            4456667777777777777666555444       777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCC
Q 022927          240 IAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT  288 (290)
Q Consensus       240 iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~  288 (290)
                      ++++|+++|++++..+ .|+||||+|+..|+.+++++|+++|++++..|
T Consensus       140 ~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d  187 (285)
T 3d9h_A          140 CVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKI  187 (285)
T ss_dssp             HHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCB
T ss_pred             HHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence            7777777766666433 36666666666666666666666666666554

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.83  E-value=2.7e-20  Score=160.44  Aligned_cols=121  Identities=18%  Similarity=0.183  Sum_probs=111.0

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHH
Q 022927          161 GSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDI  240 (290)
Q Consensus       161 ~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~i  240 (290)
                      ..++.+.+++|++.|.+++.....      .|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.++
T Consensus        14 ~~g~~~~v~~Ll~~g~~~~~~~~~------~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~   87 (285)
T 1wdy_A           14 QNEDVDLVQQLLEGGANVNFQEEE------GGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKL   87 (285)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTT------TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred             HcCCHHHHHHHHHcCCCcccccCC------CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHH
Confidence            456678889999999988776322      34459999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCC
Q 022927          241 AFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGST  287 (290)
Q Consensus       241 v~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~  287 (290)
                      +++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++..
T Consensus        88 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~  134 (285)
T 1wdy_A           88 LKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLR  134 (285)
T ss_dssp             HHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccc
Confidence            99999999999999999999999999999999999999999999876

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.83  E-value=4.2e-21  Score=172.63  Aligned_cols=132  Identities=17%  Similarity=0.145  Sum_probs=111.8

Q ss_pred             cCCCCCCCcccccccCC----CCCCCCCCC----------CCCccccccchHHHHHHHcC--CHHHHHHHHHCCCCCccc
Q 022927          158 RSRGSTSNSNFSSIFNP----GQVTNGATD----------KPRMEYEVNGEGLRDAIKNG--DAAAVKKLLSEGVDANFC  221 (290)
Q Consensus       158 ~~~~s~~~~~~~~Ll~~----g~~~~~~~~----------~~~~~~~~~~t~Lh~A~~~g--~~~~v~~Ll~~g~~vn~~  221 (290)
                      .....+..+++++|++.    |.+++....          ........|.||||+|+..|  +.+++++|+++|++++..
T Consensus        90 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~  169 (364)
T 3ljn_A           90 LAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAK  169 (364)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCC
T ss_pred             HHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCccc
Confidence            33456677788888887    555443000          00112234667999999999  999999999999999999


Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHCCCC-----CCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          222 DKQGMSLLHLAALFNRTDIAFILMESGAN-----MDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       222 d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~-----in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      |..|+||||+|+..|+.+++++|+++|++     ++.+|..|+||||+|+..|+.+++++|+++|||+|..|.
T Consensus       170 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~  242 (364)
T 3ljn_A          170 DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDN  242 (364)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Confidence            99999999999999999999999999999     999999999999999999999999999999999998874

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.82  E-value=1.3e-20  Score=163.60  Aligned_cols=99  Identities=17%  Similarity=0.201  Sum_probs=93.8

Q ss_pred             ccchHHHHHH-----HcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhh
Q 022927          191 VNGEGLRDAI-----KNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA  265 (290)
Q Consensus       191 ~~~t~Lh~A~-----~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A  265 (290)
                      .|.||||+|+     ..++.+++++|++.|.+++..|..|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|
T Consensus       144 ~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A  223 (276)
T 4hbd_A          144 AGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCA  223 (276)
T ss_dssp             TSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHH
Confidence            0578999999     66899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCHHHHHHHHh-CCCCCCCCCC
Q 022927          266 PVTLQYKMRQKMEE-DKNNVGSTTS  289 (290)
Q Consensus       266 ~~~g~~~iv~~Ll~-~GAdin~~~~  289 (290)
                      +..|+.+++++|++ +|+|++.+|.
T Consensus       224 ~~~g~~~iv~~Ll~~~gad~~~~d~  248 (276)
T 4hbd_A          224 CEHGHKEIAGLLLAVPSCDISLTDR  248 (276)
T ss_dssp             HHHTCHHHHHHHHTSTTCCTTCCCT
T ss_pred             HHCCCHHHHHHHHhcCCCCCcCcCC
Confidence            99999999999999 8999998874

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.82  E-value=3.2e-20  Score=165.16  Aligned_cols=123  Identities=18%  Similarity=0.181  Sum_probs=109.4

Q ss_pred             CCCCCCcccccccC-CCCCCCCCCCCCCccccccchHHHHHHHcCC----HHHHHHHHHCCCCCcccccCCCcHHHHHHH
Q 022927          160 RGSTSNSNFSSIFN-PGQVTNGATDKPRMEYEVNGEGLRDAIKNGD----AAAVKKLLSEGVDANFCDKQGMSLLHLAAL  234 (290)
Q Consensus       160 ~~s~~~~~~~~Ll~-~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~----~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~  234 (290)
                      ...+..+++++|++ .|++++..+..+.+       +||+++..+.    ..++++|+++|+++|.+|..|+||||+|+.
T Consensus       176 ~~~g~~~~v~~LL~~~gad~n~~d~~g~t-------~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~  248 (337)
T 4g8k_A          176 AEKGHVEVLKILLDEMGADVNACDNMGRN-------ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVE  248 (337)
T ss_dssp             HHHTCHHHHHHHHHHSCCCTTCCCTTSCC-------HHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHH
T ss_pred             HHCCCHHHHHHHHhccCCCcCccCCCCCc-------HHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            44567788899985 69999888776665       8888776654    358899999999999999999999999999


Q ss_pred             cCCHHHHHHHHHC-CCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          235 FNRTDIAFILMES-GANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       235 ~g~~~iv~~Ll~~-Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      .|+.+++++|++. |+++|.+|.+|+||||+|+..|+.++|++||++|||+|..|.
T Consensus       249 ~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~~~  304 (337)
T 4g8k_A          249 KKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL  304 (337)
T ss_dssp             TTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTCCH
T ss_pred             hhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCH
Confidence            9999999999986 899999999999999999999999999999999999998763

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.82  E-value=8.8e-21  Score=165.46  Aligned_cols=116  Identities=16%  Similarity=0.141  Sum_probs=80.6

Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHH
Q 022927          160 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD  239 (290)
Q Consensus       160 ~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~  239 (290)
                      ...+..+++++|++.|++++..+         |.||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+
T Consensus        39 ~~~g~~~~v~~Ll~~g~~~~~~~---------g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~  109 (285)
T 3kea_A           39 IADNNVRLVCTLLNAGALKNLLE---------NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQ  109 (285)
T ss_dssp             HHTTCHHHHHHHHHTTGGGSCCT---------TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHcCCHHHHHHHHhCCCCCCCCC---------CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence            34555666677777776665542         334777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHCCCCCCCCCCCC-CChhhhhhccCCHHHHHHHHhCCCCC
Q 022927          240 IAFILMESGANMDCKNAQG-ESPLDCAPVTLQYKMRQKMEEDKNNV  284 (290)
Q Consensus       240 iv~~Ll~~Ga~in~~d~~G-~TpL~~A~~~g~~~iv~~Ll~~GAdi  284 (290)
                      ++++|+++|++++.+|..| .||||+|+..|+.+++++|+++|+++
T Consensus       110 ~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~  155 (285)
T 3kea_A          110 TVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST  155 (285)
T ss_dssp             HHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT
T ss_pred             HHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc
Confidence            7777777777777777776 57777777777777777777776665

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.81  E-value=4.2e-20  Score=150.49  Aligned_cols=114  Identities=21%  Similarity=0.328  Sum_probs=101.0

Q ss_pred             CCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccc-cCCCcHHHHHHHcCC
Q 022927          159 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCD-KQGMSLLHLAALFNR  237 (290)
Q Consensus       159 ~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d-~~g~TpLh~A~~~g~  237 (290)
                      ....+..+.++.|++ |.+++..+..+.+       |||+|+..|+.+++++|+++|+++|.+| ..|+||||+|+..|+
T Consensus        51 A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t-------~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~  122 (183)
T 3deo_A           51 AARKADEQALSQLLE-DRDVDAVDENGRT-------ALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVR  122 (183)
T ss_dssp             HHHTTCHHHHHHHTT-TSCTTCCCTTSCC-------HHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTC
T ss_pred             HHHcCCHHHHHHHHh-cCCCCCcCCCCCC-------HHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCc
Confidence            345667788899999 8888887766555       9999999999999999999999999998 899999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCChhhhhhcc----------------CCHHHHHHHHhC
Q 022927          238 TDIAFILMESGANMDCKNAQGESPLDCAPVT----------------LQYKMRQKMEED  280 (290)
Q Consensus       238 ~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~----------------g~~~iv~~Ll~~  280 (290)
                      .+++++|+++|++++.+|..|+||||+|+..                |+.+++++|.++
T Consensus       123 ~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          123 PEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccCcccccHHHHHHHcCHHHHHHHHHHh
Confidence            9999999999999999999999999999765                567777777654

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.81  E-value=3.2e-20  Score=158.35  Aligned_cols=118  Identities=20%  Similarity=0.305  Sum_probs=106.2

Q ss_pred             cCCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccc-cCCCcHHHHHHHcC
Q 022927          158 RSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCD-KQGMSLLHLAALFN  236 (290)
Q Consensus       158 ~~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d-~~g~TpLh~A~~~g  236 (290)
                      .....+..+.++.|++ |.+++..+..+.+       |||+|+..|+.++|++||++|+++|.+| ..|+||||+|+..|
T Consensus        51 ~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t-------~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g  122 (244)
T 3ui2_A           51 TAARKADEQALSQLLE-DRDVDAVDENGRT-------ALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV  122 (244)
T ss_dssp             HHHTTTCHHHHHHTTT-TCCTTCBCTTSCB-------HHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHc-CCCCCCcCCCCCC-------HHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcC
Confidence            3456778888999999 8888887766554       9999999999999999999999999998 78999999999999


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCChhhhhh----------------ccCCHHHHHHHHhCCCC
Q 022927          237 RTDIAFILMESGANMDCKNAQGESPLDCAP----------------VTLQYKMRQKMEEDKNN  283 (290)
Q Consensus       237 ~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~----------------~~g~~~iv~~Ll~~GAd  283 (290)
                      +.+++++|+++|++++.+|..|+||||+|+                ..|+.+++++|++++.+
T Consensus       123 ~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          123 RPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFE  185 (244)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence            999999999999999999999999999997                56889999999986543

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.81  E-value=5.3e-20  Score=169.29  Aligned_cols=123  Identities=24%  Similarity=0.292  Sum_probs=110.5

Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHH
Q 022927          160 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD  239 (290)
Q Consensus       160 ~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~  239 (290)
                      ...+..+++++|++.|.+++..+..+.       ||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+
T Consensus       220 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~-------t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~  292 (437)
T 1n11_A          220 AKQNQVEVARSLLQYGGSANAESVQGV-------TPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVP  292 (437)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTCC-------CHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCC-------CHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            345566777888888888777665554       4999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          240 IAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       240 iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      ++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+++|.+|.
T Consensus       293 ~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~  342 (437)
T 1n11_A          293 VADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTK  342 (437)
T ss_dssp             HHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999998874

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.81  E-value=1.2e-20  Score=164.58  Aligned_cols=126  Identities=17%  Similarity=0.187  Sum_probs=81.6

Q ss_pred             cccCCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCC----------
Q 022927          156 TARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQG----------  225 (290)
Q Consensus       156 ~~~~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g----------  225 (290)
                      .......+..+++++|++.|++++..+..+.+       |||+|+..|+.+++++|+++|++++..|..|          
T Consensus        66 L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t-------~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~  138 (285)
T 3kea_A           66 LHQAATLEDTKIVKILLFSGLDDSQFDDKGNT-------ALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVM  138 (285)
T ss_dssp             HHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCC-------HHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCc-------HHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHH
Confidence            33445566777888888888888776665554       6777777677677776666666666666555          


Q ss_pred             -----------------------CcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCh-hhhhhccCCHHHHHHHHhCC
Q 022927          226 -----------------------MSLLHLAALFNRTDIAFILMESGANMDCKNAQGESP-LDCAPVTLQYKMRQKMEEDK  281 (290)
Q Consensus       226 -----------------------~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~Tp-L~~A~~~g~~~iv~~Ll~~G  281 (290)
                                             +||||+|+..|+.+++++|+++|++++.+|..|+|| ||+|+..|+.+++++|+++|
T Consensus       139 ~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~g  218 (285)
T 3kea_A          139 LNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYD  218 (285)
T ss_dssp             TTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSC
T ss_pred             cCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcC
Confidence                                   455555555555555555665666666666666665 66666666666666666666


Q ss_pred             CCCCCCC
Q 022927          282 NNVGSTT  288 (290)
Q Consensus       282 Adin~~~  288 (290)
                      ||++..|
T Consensus       219 ad~~~~~  225 (285)
T 3kea_A          219 INIYSAN  225 (285)
T ss_dssp             BCSTTTT
T ss_pred             CCCCCCC
Confidence            6666554

>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A

Probab=99.81  E-value=4.5e-21  Score=135.14  Aligned_cols=58  Identities=28%  Similarity=0.607  Sum_probs=53.0

Q ss_pred             ccccccccCCCCCccccccccccccceecCCCCCCcccccCCCCCCcccccccchhhhcc
Q 022927            4 HDLQNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSR   63 (290)
Q Consensus         4 ~~~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~   63 (290)
                      ....|+.|+.+|++|+||||||.||+|||+.|+.+++++|..  .+++|||+.||..+..
T Consensus        18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~--~~~~RVC~~C~~~l~~   75 (82)
T 2yw8_A           18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSY--PKPVRVCDSCHTLLLQ   75 (82)
T ss_dssp             CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTC--SSCEEECHHHHHHTTC
T ss_pred             cCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCC--CCcCEECHHHHHHHHH
Confidence            346799999999999999999999999999999999999865  5999999999999864

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.80  E-value=1.8e-19  Score=151.55  Aligned_cols=124  Identities=15%  Similarity=0.081  Sum_probs=101.3

Q ss_pred             CCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccc-cCCCcHHHHHHHcCC
Q 022927          159 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCD-KQGMSLLHLAALFNR  237 (290)
Q Consensus       159 ~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d-~~g~TpLh~A~~~g~  237 (290)
                      ....++.+.+++|++.|.+++..+..+.+       |||+|+..|+.+++++|+++|.+++..+ ..|+||||+|+..|+
T Consensus        16 A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~   88 (240)
T 3eu9_A           16 ATQYGIYERCRELVEAGYDVRQPDKENVT-------LLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGH   88 (240)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCC-------HHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTC
T ss_pred             HHHcCChHHHHHHHHcCCCcCCCCCCCCC-------HHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCC
Confidence            34566778888888888888776655544       8888888888888888888888877655 448888888888888


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          238 TDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       238 ~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      .+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..+.
T Consensus        89 ~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~  140 (240)
T 3eu9_A           89 LSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQ  140 (240)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCC
Confidence            8888888888888888888888888888888888888888888888877653

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.80  E-value=5.9e-20  Score=166.20  Aligned_cols=99  Identities=19%  Similarity=0.240  Sum_probs=76.5

Q ss_pred             ccchHHHHHHHcC---CHHHHHHHHHCCCCCcc--------cccCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCC
Q 022927          191 VNGEGLRDAIKNG---DAAAVKKLLSEGVDANF--------CDKQGMSLLHLAALFNRTDIAFILMESG-ANMDCKNAQG  258 (290)
Q Consensus       191 ~~~t~Lh~A~~~g---~~~~v~~Ll~~g~~vn~--------~d~~g~TpLh~A~~~g~~~iv~~Ll~~G-a~in~~d~~G  258 (290)
                      .|.||||+|+..+   +.+++++|+++|++++.        .|..|+||||+|+..|+.+++++|+++| ++++.+|..|
T Consensus       234 ~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g  313 (373)
T 2fo1_E          234 NGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDG  313 (373)
T ss_dssp             TSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTC
T ss_pred             CCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCC
Confidence            3456777777776   67777888887777775        4567788888888888888888888764 8888888888


Q ss_pred             CChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          259 ESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       259 ~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      +||||+|+..|+.+++++|+++||+++.+|.
T Consensus       314 ~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~  344 (373)
T 2fo1_E          314 KTPIMLAAQEGRIEVVMYLIQQGASVEAVDA  344 (373)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCS
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCccCCCC
Confidence            8888888888888888888888888877663

>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}

Probab=99.80  E-value=7.6e-21  Score=136.21  Aligned_cols=61  Identities=21%  Similarity=0.514  Sum_probs=54.5

Q ss_pred             ccccccccCCCCCccccccccccccceecCCCCCCcccccCCCCCCcccccccchhhhcccCC
Q 022927            4 HDLQNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTGK   66 (290)
Q Consensus         4 ~~~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~~~   66 (290)
                      ...+|+.|+++|++++||||||.||+|||+.|+.++..+|..+  +++|||+.||..+.....
T Consensus        19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~--~~~RVC~~C~~~l~~~~~   79 (90)
T 3t7l_A           19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLE--KEARVCVVCYETISKAQA   79 (90)
T ss_dssp             GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTT--EEEEECHHHHHHHHHHC-
T ss_pred             cCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCC--CCCeECHHHHHHHHHHhh
Confidence            4567999999999999999999999999999999999988654  899999999999976644

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.79  E-value=2.3e-19  Score=162.03  Aligned_cols=98  Identities=20%  Similarity=0.262  Sum_probs=94.2

Q ss_pred             cchHHHHHHHc-CCHHHHHHHHHCCCCCcccc--cCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhcc
Q 022927          192 NGEGLRDAIKN-GDAAAVKKLLSEGVDANFCD--KQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVT  268 (290)
Q Consensus       192 ~~t~Lh~A~~~-g~~~~v~~Ll~~g~~vn~~d--~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~  268 (290)
                      +.|+||+|+.. |+++++++||++|+++|..|  ..|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..
T Consensus       199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~  278 (368)
T 3jue_A          199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL  278 (368)
T ss_dssp             HHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            44699999999 99999999999999999998  8999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCCCCCC
Q 022927          269 LQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       269 g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      |+.+++++|+++||++++.|.
T Consensus       279 g~~~~v~~LL~~Gad~~~~d~  299 (368)
T 3jue_A          279 GHTGLACLFLKRGADLGARDS  299 (368)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCT
T ss_pred             CcHHHHHHHHHCcCCCCCcCC
Confidence            999999999999999998874

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.79  E-value=1.6e-19  Score=151.80  Aligned_cols=123  Identities=17%  Similarity=0.170  Sum_probs=96.3

Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCC-H
Q 022927          160 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR-T  238 (290)
Q Consensus       160 ~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~-~  238 (290)
                      ...+..+++++|++.|++++..+..+.+       |||+|+..|+.+++++|+++|++++..|..|.||||+|+..++ .
T Consensus        84 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-------~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~  156 (240)
T 3eu9_A           84 TRQGHLSMVVQLMKYGADPSLIDGEGCS-------CIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSV  156 (240)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCC-------HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSS
T ss_pred             HHcCCHHHHHHHHHcCCCCcccCCCCCC-------HHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChH
Confidence            3445667778888888887776655444       7888888888888888888888888888888888888886655 6


Q ss_pred             HHHHHHHHCCCCCCCCCC-CCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          239 DIAFILMESGANMDCKNA-QGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       239 ~iv~~Ll~~Ga~in~~d~-~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      +++++|++.|++++..+. .|+||||+|+..|+.+++++|+++|++++..|.
T Consensus       157 ~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  208 (240)
T 3eu9_A          157 DPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNI  208 (240)
T ss_dssp             TTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCT
T ss_pred             HHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence            778888888888887776 788888888888888888888888888887653

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.78  E-value=4.8e-19  Score=160.21  Aligned_cols=123  Identities=17%  Similarity=0.150  Sum_probs=112.5

Q ss_pred             ccCCCCCCCccccccc--------CCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcH
Q 022927          157 ARSRGSTSNSNFSSIF--------NPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSL  228 (290)
Q Consensus       157 ~~~~~s~~~~~~~~Ll--------~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~Tp  228 (290)
                      ...+..+..+.+++|+        +.|++++..+..+.+       |||+|+..|+.++|++|+++|++++..|..|.||
T Consensus       130 h~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~T-------pL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~  202 (373)
T 2fo1_E          130 HWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENT-------PLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA  202 (373)
T ss_dssp             HHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCC-------HHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCC-------HHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCH
Confidence            3345667778888876        789999888766655       9999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHCC---CCCCCCCCCCCChhhhhhccC---CHHHHHHHHhCCCCCCC
Q 022927          229 LHLAALFNRTDIAFILMESG---ANMDCKNAQGESPLDCAPVTL---QYKMRQKMEEDKNNVGS  286 (290)
Q Consensus       229 Lh~A~~~g~~~iv~~Ll~~G---a~in~~d~~G~TpL~~A~~~g---~~~iv~~Ll~~GAdin~  286 (290)
                      ||+|+..|+.+++++|+++|   ++++..|..|+||||+|+..+   +.+++++|+++|++++.
T Consensus       203 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~  266 (373)
T 2fo1_E          203 LHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDY  266 (373)
T ss_dssp             HHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSC
T ss_pred             HHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCccc
Confidence            99999999999999999998   899999999999999999988   89999999999999986

>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A

Probab=99.78  E-value=3.8e-20  Score=140.70  Aligned_cols=57  Identities=30%  Similarity=0.579  Sum_probs=52.1

Q ss_pred             ccccccccCCCCCccccccccccccceecCCCCCCcccccCCCCCCcccccccchhhhc
Q 022927            4 HDLQNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSS   62 (290)
Q Consensus         4 ~~~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~   62 (290)
                      ....|+.|+.+|++|+||||||.||+|||+.||.+++++|..  .+++|||+.||..++
T Consensus        68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~~~~p~~--~~p~RVC~~C~~~l~  124 (125)
T 1joc_A           68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSS--KKPVRVCDACFNDLQ  124 (125)
T ss_dssp             GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEECCTTC--SSCEEECHHHHHHTT
T ss_pred             CCCCCcCcCCccccccccccCCCCCeEEChHHhCCccccCCC--CCCCEeCHHHHHHhc
Confidence            356799999999999999999999999999999999988864  599999999999874

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.78  E-value=8.5e-19  Score=164.57  Aligned_cols=96  Identities=23%  Similarity=0.275  Sum_probs=92.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCCccc------ccCCCcHHHHHHH---cCCHHHHHHHHHCCCCCCCCCCCCCChhhh
Q 022927          194 EGLRDAIKNGDAAAVKKLLSEGVDANFC------DKQGMSLLHLAAL---FNRTDIAFILMESGANMDCKNAQGESPLDC  264 (290)
Q Consensus       194 t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~------d~~g~TpLh~A~~---~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~  264 (290)
                      +.||.|+..|+.++++.||+.|+++|..      |..|+||||+|+.   .|+.+++++||++|+++|.+|..|+||||+
T Consensus       134 ~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~  213 (497)
T 3lvq_E          134 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY  213 (497)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHH
T ss_pred             HHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHHH
Confidence            4799999999999999999999999988      8899999999976   899999999999999999999999999999


Q ss_pred             hhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          265 APVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       265 A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      |+..|+.+++++||++|||+|++|.
T Consensus       214 A~~~g~~~~v~~Ll~~ga~~~~~d~  238 (497)
T 3lvq_E          214 AALYNQPDCLKLLLKGRALVGTVNE  238 (497)
T ss_dssp             HTTTTCHHHHHHHHHTCCCCSCCCT
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCC
Confidence            9999999999999999999999875

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.77  E-value=9.7e-19  Score=153.93  Aligned_cols=96  Identities=23%  Similarity=0.297  Sum_probs=92.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCCcc------cccCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCCChhhh
Q 022927          194 EGLRDAIKNGDAAAVKKLLSEGVDANF------CDKQGMSLLHLAALF---NRTDIAFILMESGANMDCKNAQGESPLDC  264 (290)
Q Consensus       194 t~Lh~A~~~g~~~~v~~Ll~~g~~vn~------~d~~g~TpLh~A~~~---g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~  264 (290)
                      ++|++|+..|+.+.++.|++.|++++.      .|..|+||||+|+..   ++.+++++||++|+++|.+|..|+||||+
T Consensus       153 ~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~  232 (301)
T 2b0o_E          153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY  232 (301)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHH
T ss_pred             HHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence            479999999999999999999999998      689999999999997   89999999999999999999999999999


Q ss_pred             hhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          265 APVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       265 A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      |+..|+.+++++|+++|||++++|.
T Consensus       233 A~~~g~~~~v~~Ll~~gad~~~~d~  257 (301)
T 2b0o_E          233 AALYNQPDCLKLLLKGRALVGTVNE  257 (301)
T ss_dssp             HHHTTCHHHHHHHHHTTCCCSCCCT
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCC
Confidence            9999999999999999999999874

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.77  E-value=2.2e-18  Score=149.99  Aligned_cols=96  Identities=20%  Similarity=0.257  Sum_probs=90.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCCc------ccccCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCCChhhh
Q 022927          194 EGLRDAIKNGDAAAVKKLLSEGVDAN------FCDKQGMSLLHLAALF---NRTDIAFILMESGANMDCKNAQGESPLDC  264 (290)
Q Consensus       194 t~Lh~A~~~g~~~~v~~Ll~~g~~vn------~~d~~g~TpLh~A~~~---g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~  264 (290)
                      ++|+.|+..|+.+.++.+++.|++++      ..|..|+||||+|+..   |+.+++++|+++|+++|.+|..|+||||+
T Consensus       132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~  211 (278)
T 1dcq_A          132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY  211 (278)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHH
T ss_pred             hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHH
Confidence            47999999999999999999999954      4578999999999999   89999999999999999999999999999


Q ss_pred             hhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          265 APVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       265 A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      |+..|+.+++++|+++|||++.+|.
T Consensus       212 A~~~g~~~~v~~Ll~~gad~~~~d~  236 (278)
T 1dcq_A          212 CCLTDNAECLKLLLRGKASIEIANE  236 (278)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCccC
Confidence            9999999999999999999999874

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=99.75  E-value=1.5e-19  Score=152.02  Aligned_cols=61  Identities=34%  Similarity=0.709  Sum_probs=55.6

Q ss_pred             cccccccCCCCCccccccccccccceecCCCCCCcccccCCCCCCcccccccchhhhcccC
Q 022927            5 DLQNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTG   65 (290)
Q Consensus         5 ~~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~~   65 (290)
                      ..+|+.|+++|++++||||||.||+|||+.||.++..+|.++..+++|||+.||..++...
T Consensus       164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l~~~~  224 (226)
T 3zyq_A          164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLNRKA  224 (226)
T ss_dssp             CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHHCC--
T ss_pred             CCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHhhhhc
Confidence            3579999999999999999999999999999999999999887899999999999997543

>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1

Probab=99.74  E-value=2.2e-19  Score=150.65  Aligned_cols=59  Identities=34%  Similarity=0.714  Sum_probs=55.2

Q ss_pred             cccccccCCCCCccccccccccccceecCCCCCCcccccCCCCCCcccccccchhhhcc
Q 022927            5 DLQNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSR   63 (290)
Q Consensus         5 ~~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~   63 (290)
                      ...|+.|+++|++++||||||.||+|||+.||.++.++|.+|..+++|||+.||..+..
T Consensus       161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~~~~~~~~~~~~~RvC~~C~~~l~~  219 (220)
T 1dvp_A          161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYGIEKEVRVCDGCFAALQR  219 (220)
T ss_dssp             CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEEEEEGGGTEEEEEEECHHHHHHHHH
T ss_pred             CCccCCCCCccCCcccccccCCcCCEEChHHhCCeeecCcCCCCCCCEeCHHHHHHHhc
Confidence            46899999999999999999999999999999999999998888999999999998853

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.69  E-value=4.9e-18  Score=150.91  Aligned_cols=127  Identities=13%  Similarity=0.062  Sum_probs=100.6

Q ss_pred             CCCcccccccCCCCCCCCCCCCCCccccc---------------cchHH-----------------------HHHHHcCC
Q 022927          163 TSNSNFSSIFNPGQVTNGATDKPRMEYEV---------------NGEGL-----------------------RDAIKNGD  204 (290)
Q Consensus       163 ~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~---------------~~t~L-----------------------h~A~~~g~  204 (290)
                      ...+.+++|++.|++++..+..+.+....               +.+++                       |+|+..+.
T Consensus        30 ~~~dlv~~ll~~ga~i~~~~~~g~~~~~g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~  109 (327)
T 1sw6_A           30 FTHDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLL  109 (327)
T ss_dssp             CCTTCCCSTTTSSCCCEECBCCCCCCCHHHHHHHHHHHHHHHC-------------------------------CHHHHH
T ss_pred             hcCchHHHHhhCCcccccCCCCCCcccCchhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhH
Confidence            34567888888888888777666554321               12222                       44555566


Q ss_pred             HHHHHHHHHCCCCCcc-cccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCC---HHHHHHHHhC
Q 022927          205 AAAVKKLLSEGVDANF-CDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQ---YKMRQKMEED  280 (290)
Q Consensus       205 ~~~v~~Ll~~g~~vn~-~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~---~~iv~~Ll~~  280 (290)
                      .+++++|++.|+++|. +|..|+||||+|+..|+.+++++||++|++++.+|..|+||||+|+..|+   .++++.|+++
T Consensus       110 ~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~  189 (327)
T 1sw6_A          110 QEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDY  189 (327)
T ss_dssp             HHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHh
Confidence            6788889999999999 89999999999999999999999999999999999999999999999998   6888888887


Q ss_pred             C-CCCCCCCC
Q 022927          281 K-NNVGSTTS  289 (290)
Q Consensus       281 G-Adin~~~~  289 (290)
                      + ++++..|.
T Consensus       190 ~~~~~~~~d~  199 (327)
T 1sw6_A          190 LYPCLILEDS  199 (327)
T ss_dssp             HGGGGGEECT
T ss_pred             hhccccCCCC
Confidence            6 67776653

>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1

Probab=99.69  E-value=2.9e-18  Score=128.14  Aligned_cols=52  Identities=17%  Similarity=0.298  Sum_probs=43.5

Q ss_pred             ccccccccCCCCCccccccccccccceecCCCCCCcccccCCCCCCcccccccchhhhcc
Q 022927            4 HDLQNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSR   63 (290)
Q Consensus         4 ~~~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~   63 (290)
                      ....|+.|+.+|++++||||||.||+|||+.||.++++        ++|||+.||..+..
T Consensus        18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~--------~vRVC~~C~~~~~~   69 (120)
T 1y02_A           18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGN--------GPRLCLLCQRFRAT   69 (120)
T ss_dssp             --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC------------CCEEHHHHHHHHT
T ss_pred             ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCC--------CceECHHHHHHHhc
Confidence            45679999999999999999999999999999998864        49999999998753

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.66  E-value=3.9e-18  Score=154.49  Aligned_cols=122  Identities=11%  Similarity=-0.035  Sum_probs=97.0

Q ss_pred             cccCCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCC---cccccCCCcHHHHH
Q 022927          156 TARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDA---NFCDKQGMSLLHLA  232 (290)
Q Consensus       156 ~~~~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~v---n~~d~~g~TpLh~A  232 (290)
                      ....+..+..+++++|++.|+.....+.    ....+.||||+|+..|+.++|++|+++|+++   +..+.+ +||||+|
T Consensus        96 Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~----~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~A  170 (376)
T 2aja_A           96 CFVAAITGCSSALDTLCLLLTSDEIVKV----IQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLA  170 (376)
T ss_dssp             HHHHHHHCCHHHHHHHTTC--CCSSCC------CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCcHHHHHH----hccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHH
Confidence            3344567788899999999873322111    1124567999999999999999999999863   333333 8999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCC--CCCCCCChhhhhh-ccCCHHHHHHHHhCCC
Q 022927          233 ALFNRTDIAFILMESGANMDC--KNAQGESPLDCAP-VTLQYKMRQKMEEDKN  282 (290)
Q Consensus       233 ~~~g~~~iv~~Ll~~Ga~in~--~d~~G~TpL~~A~-~~g~~~iv~~Ll~~GA  282 (290)
                      +..|+.+++++|+++|++++.  .|..|+||||+|+ ..|+.+++++|+++|+
T Consensus       171 a~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga  223 (376)
T 2aja_A          171 AENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV  223 (376)
T ss_dssp             HHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH
T ss_pred             HHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC
Confidence            999999999999999999887  8889999999999 9999999999998775

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.65  E-value=3e-17  Score=123.02  Aligned_cols=96  Identities=25%  Similarity=0.300  Sum_probs=85.4

Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHH
Q 022927          160 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD  239 (290)
Q Consensus       160 ~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~  239 (290)
                      ...+..+.+++|++.|++++..+..+.+       |||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+
T Consensus        17 ~~~~~~~~~~~Ll~~g~~~~~~d~~g~t-------~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~~~~   89 (115)
T 2l6b_A           17 AKNGHAEEVKKLLSKGADVNARSKDGNT-------PLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHE   89 (115)
T ss_dssp             HHHTCHHHHHHHTTTTCCSSCCCSSSCC-------TTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHTTTCHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCCC-------HHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHH
Confidence            3445677889999999998887766555       899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCChh
Q 022927          240 IAFILMESGANMDCKNAQGESPL  262 (290)
Q Consensus       240 iv~~Ll~~Ga~in~~d~~G~TpL  262 (290)
                      ++++|+++|+++|.++..|.||-
T Consensus        90 ~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           90 IVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             HHHHHHTTSSSHHHHSCCCC---
T ss_pred             HHHHHHHcCCCCCcCCccccccc
Confidence            99999999999999999999884

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.65  E-value=2.5e-16  Score=113.61  Aligned_cols=82  Identities=32%  Similarity=0.392  Sum_probs=75.5

Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHH
Q 022927          162 STSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIA  241 (290)
Q Consensus       162 s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv  241 (290)
                      .+..+++++|++.|++++..+..+.+       |||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++
T Consensus        12 ~~~~~~v~~Ll~~g~~~n~~d~~g~t-------~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~   84 (93)
T 1n0q_A           12 NGHLEVVKLLLEAGADVNAKDKNGRT-------PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVV   84 (93)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCC-------HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             cCCHHHHHHHHHcCCCCcccCCCCCC-------HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHH
Confidence            45567889999999999888776655       99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCC
Q 022927          242 FILMESGAN  250 (290)
Q Consensus       242 ~~Ll~~Ga~  250 (290)
                      ++|+++|++
T Consensus        85 ~~Ll~~ga~   93 (93)
T 1n0q_A           85 KLLLEAGAY   93 (93)
T ss_dssp             HHHHHTTCC
T ss_pred             HHHHHcCCC
Confidence            999999985

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.57  E-value=3.1e-15  Score=111.39  Aligned_cols=72  Identities=22%  Similarity=0.228  Sum_probs=65.0

Q ss_pred             CcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          218 ANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       218 vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      .+..|..|.|+||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   88 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDK   88 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccc
Confidence            344578899999999999999999999999999999999999999999999999999999999999998874

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.56  E-value=5e-16  Score=140.63  Aligned_cols=93  Identities=12%  Similarity=-0.027  Sum_probs=77.3

Q ss_pred             chHHHHHHHcCCHHHHHHHHHCCCCC---cccccCCCcHHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCCChhhhhh
Q 022927          193 GEGLRDAIKNGDAAAVKKLLSEGVDA---NFCDKQGMSLLHLAALFNRTDIAFILMESGANM---DCKNAQGESPLDCAP  266 (290)
Q Consensus       193 ~t~Lh~A~~~g~~~~v~~Ll~~g~~v---n~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~i---n~~d~~G~TpL~~A~  266 (290)
                      .||||+|+..|+.++|++|++.|+..   +..+..|.||||+|+..|+.+++++|+++|+++   +..+.+ +||||+|+
T Consensus        93 ~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa  171 (376)
T 2aja_A           93 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAA  171 (376)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHH
Confidence            37999999999999999999999832   233456789999999999999999999999862   333333 99999999


Q ss_pred             ccCCHHHHHHHHhCCCCCCC
Q 022927          267 VTLQYKMRQKMEEDKNNVGS  286 (290)
Q Consensus       267 ~~g~~~iv~~Ll~~GAdin~  286 (290)
                      ..|+.+++++|+++|++++.
T Consensus       172 ~~G~~eiv~~Ll~~ga~~~~  191 (376)
T 2aja_A          172 ENGHLHVLNRLCELAPTEAT  191 (376)
T ss_dssp             HTTCHHHHHHHHHSCGGGHH
T ss_pred             HCCCHHHHHHHHHcCCccch
Confidence            99999999999999999654

>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}

Probab=99.53  E-value=6.1e-16  Score=142.72  Aligned_cols=58  Identities=22%  Similarity=0.569  Sum_probs=0.0

Q ss_pred             cccccccCCCCCccccccccccccceecCCCCCCcccccCCCCCCcccccccchhhhcc
Q 022927            5 DLQNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSR   63 (290)
Q Consensus         5 ~~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~   63 (290)
                      ..+|+.|+.+|++++||||||.||+|||..||.+++++|..+ .+++|||+.||..+..
T Consensus       375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~-~~~~rvC~~C~~~l~~  432 (434)
T 3mpx_A          375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLK-DRMAKVCDGCFGELKK  432 (434)
T ss_dssp             -----------------------------------------------------------
T ss_pred             CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCC-CCcCEecHHHHHHHHh
Confidence            467999999999999999999999999999999999988555 6899999999998854

>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}

Probab=95.19  E-value=0.0063  Score=47.11  Aligned_cols=50  Identities=18%  Similarity=0.379  Sum_probs=40.8

Q ss_pred             cccccccCCCCC-ccccccccccccceecCCCCCCcccccCCCCCCcccccccchhhh
Q 022927            5 DLQNLRLISHIR-SNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSS   61 (290)
Q Consensus         5 ~~~~~~c~~~f~-~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~   61 (290)
                      ...|..|..+|. ++++.+-|..|..-||.+|....   +    ....=+|..|+...
T Consensus        68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~---~----~~~~W~C~vC~k~r  118 (153)
T 2zet_C           68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAH---P----EEQGWLCDPCHLAR  118 (153)
T ss_dssp             GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECC---S----SSSSCEEHHHHHHH
T ss_pred             CccchhhcCccccccCCCCcCCCCCchhhccccccc---C----CCCcEeeHHHHHHH
Confidence            456899999999 55899999999999999998321   2    35778999999763

>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1

Probab=95.16  E-value=0.007  Score=45.78  Aligned_cols=53  Identities=11%  Similarity=0.243  Sum_probs=42.1

Q ss_pred             cccccccCCCCC-ccccccccccccceecCCCCCCcccccCCCCCCcccccccchhhh
Q 022927            5 DLQNLRLISHIR-SNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSS   61 (290)
Q Consensus         5 ~~~~~~c~~~f~-~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~   61 (290)
                      ...|..|+.+|+ ++++.|-|..|..-||.+|....   + .+.....=+|..|+...
T Consensus        55 ~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~---~-~~~~~~~W~C~vC~k~r  108 (134)
T 1zbd_B           55 VNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVET---S-NNRPHPVWLCKICLEQR  108 (134)
T ss_dssp             SSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEEC---C-CSSSSCCEEEHHHHHHH
T ss_pred             CccccccCCCcccccCCCCCCCCCCcccccccCCcc---C-CCCCccceechhhHHHH
Confidence            356899999997 66899999999999999997643   1 12346778999999764

>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1

Probab=94.38  E-value=0.023  Score=36.70  Aligned_cols=27  Identities=26%  Similarity=0.534  Sum_probs=22.5

Q ss_pred             ccccccCCCCCccccccccccccceecCCC
Q 022927            6 LQNLRLISHIRSNLLQHHCRCCGRTLCHEH   35 (290)
Q Consensus         6 ~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c   35 (290)
                      ..|..|.++-.++  ...|| ||.+||..+
T Consensus        16 ~rC~~C~kkvgl~--~f~Cr-Cg~~FC~~H   42 (64)
T 1wfh_A           16 NRCTVCRKRVGLT--GFMCR-CGTTFCGSH   42 (64)
T ss_dssp             CCCTTTCCCCCTT--CEECS-SSCEECTTT
T ss_pred             CcChhhCCccCcc--CEEee-cCCEecccc
Confidence            3578999988877  69996 999999865

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A

Probab=93.96  E-value=0.016  Score=54.99  Aligned_cols=34  Identities=9%  Similarity=0.036  Sum_probs=30.0

Q ss_pred             cccccccCCCC-CccccccccccccceecCCCCCC
Q 022927            5 DLQNLRLISHI-RSNLLQHHCRCCGRTLCHEHSSD   38 (290)
Q Consensus         5 ~~~~~~c~~~f-~~~~rrhhCr~cg~v~C~~c~~~   38 (290)
                      -..|+.|+..| +++++.|||+.||.++|..|...
T Consensus       529 ~t~C~~C~~~l~gl~~qg~~C~~C~~~vHk~C~~~  563 (587)
T 3ky9_A          529 TTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGR  563 (587)
T ss_dssp             CCBCTTTCSBCCSSSCCEEEETTTCCEECSGGGGG
T ss_pred             CcccccccccccccccCCcCCCCCCCccchhhhhc
Confidence            35689999998 79999999999999999999764

>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1

Probab=93.91  E-value=0.031  Score=37.14  Aligned_cols=27  Identities=30%  Similarity=0.671  Sum_probs=22.4

Q ss_pred             ccccccCCCCCccccccccccccceecCCC
Q 022927            6 LQNLRLISHIRSNLLQHHCRCCGRTLCHEH   35 (290)
Q Consensus         6 ~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c   35 (290)
                      ..|..|.++-.++  ...|| ||.+||..+
T Consensus        26 ~RC~~C~kkvgL~--~f~Cr-Cg~~FCs~H   52 (74)
T 1wfp_A           26 TRCLSCNKKVGVT--GFKCR-CGSTFCGTH   52 (74)
T ss_dssp             CBCSSSCCBCTTT--CEECT-TSCEECTTT
T ss_pred             ccchhhcCccccc--ceEec-cCCEecccc
Confidence            3578999998887  79995 999999865

>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1

Probab=93.67  E-value=0.038  Score=37.87  Aligned_cols=27  Identities=22%  Similarity=0.533  Sum_probs=22.4

Q ss_pred             cccccCCCCCccccccccccccceecCCC
Q 022927            7 QNLRLISHIRSNLLQHHCRCCGRTLCHEH   35 (290)
Q Consensus         7 ~~~~c~~~f~~~~rrhhCr~cg~v~C~~c   35 (290)
                      .|..|+++-.++ -..+|| ||.+||..+
T Consensus        27 rC~~C~kkvgl~-~~f~Cr-Cg~~FC~~H   53 (85)
T 1wff_A           27 HCFLCGKKTGLA-TSFECR-CGNNFCASH   53 (85)
T ss_dssp             BCSSSCCBCSSS-SCEECT-TCCEECTTT
T ss_pred             cchhhCCeeccc-CCeEcC-CCCEecccC
Confidence            578899998876 359998 999999865

>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1

Probab=93.64  E-value=0.034  Score=36.95  Aligned_cols=26  Identities=23%  Similarity=0.580  Sum_probs=22.0

Q ss_pred             cccccCCCCCccccccccccccceecCCC
Q 022927            7 QNLRLISHIRSNLLQHHCRCCGRTLCHEH   35 (290)
Q Consensus         7 ~~~~c~~~f~~~~rrhhCr~cg~v~C~~c   35 (290)
                      .|..|+++-.++  ...|| ||.+||..+
T Consensus        27 RC~~CrKkvgL~--gf~Cr-Cg~~FCs~H   52 (74)
T 1wfl_A           27 RCFMCRKKVGLT--GFDCR-CGNLFCGLH   52 (74)
T ss_dssp             BCSSSCCBCGGG--CEECT-TSCEECSSS
T ss_pred             cChhhCCccccc--CeecC-CCCEechhc
Confidence            488899988877  48999 999999865

>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2

Probab=93.30  E-value=0.0096  Score=38.05  Aligned_cols=28  Identities=11%  Similarity=0.307  Sum_probs=23.5

Q ss_pred             cccccCCCCCccccccccccccceecCCC
Q 022927            7 QNLRLISHIRSNLLQHHCRCCGRTLCHEH   35 (290)
Q Consensus         7 ~~~~c~~~f~~~~rrhhCr~cg~v~C~~c   35 (290)
                      .|++|+..|.-.. +..|..|+++||.+|
T Consensus        17 ~C~~C~~~~~~~~-~y~C~~C~~~FC~dC   44 (59)
T 1z60_A           17 FCYGCQGELKDQH-VYVCAVCQNVFCVDC   44 (59)
T ss_dssp             EETTTTEECTTSE-EECCTTTTCCBCHHH
T ss_pred             cccccCcccCCCc-cEECCccCcCcccch
Confidence            5999999996322 478999999999998

>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1

Probab=92.14  E-value=0.083  Score=34.09  Aligned_cols=27  Identities=22%  Similarity=0.503  Sum_probs=22.2

Q ss_pred             ccccccCCCCCccccccccccccceecCCC
Q 022927            6 LQNLRLISHIRSNLLQHHCRCCGRTLCHEH   35 (290)
Q Consensus         6 ~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c   35 (290)
                      ..|..|.++-.++  ...| .||.+||..+
T Consensus        16 ~rC~~C~kkvgl~--~f~C-rCg~~FC~~H   42 (64)
T 1wg2_A           16 NRCFSCNKKVGVM--GFKC-KCGSTFCGSH   42 (64)
T ss_dssp             CSCTTTCCCCTTS--CEEC-TTSCEECSSS
T ss_pred             CcChhhCCccccc--CeEe-ecCCEecccC
Confidence            3578999988777  6999 5999999865

>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}

Probab=91.27  E-value=0.16  Score=34.53  Aligned_cols=57  Identities=18%  Similarity=0.293  Sum_probs=44.9

Q ss_pred             ccccccCCCCCccccccccccccce-----ecCCCCCCcccccCCCCCCcccccccchhhhccc
Q 022927            6 LQNLRLISHIRSNLLQHHCRCCGRT-----LCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRT   64 (290)
Q Consensus         6 ~~~~~c~~~f~~~~rrhhCr~cg~v-----~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~   64 (290)
                      ..|-.|+..-.+-.+.+||..|+.-     ||..|-..-..++.-|  -..-.|..|...+++.
T Consensus         3 ~~CP~C~~~l~~~~~~~~C~~C~~~~~~~afCPeCgq~Le~lkACG--A~~yFC~~C~~LiSkk   64 (81)
T 2jrp_A            3 ITCPVCHHALERNGDTAHCETCAKDFSLQALCPDCRQPLQVLKACG--AVDYFCQNGHGLISKK   64 (81)
T ss_dssp             CCCSSSCSCCEECSSEEECTTTCCEEEEEEECSSSCSCCCEEEETT--EEEECCTTTTCCCCTT
T ss_pred             CCCCCCCCccccCCCceECccccccCCCcccCcchhhHHHHHHhcC--CcCeeeccCCCEeecc
Confidence            4578899999998999999999976     8999987766666666  3467888888877543

>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.39  E-value=0.2  Score=33.48  Aligned_cols=48  Identities=17%  Similarity=0.359  Sum_probs=38.1

Q ss_pred             ccccccCCCCC-ccccccccccccceecCCCCCCcccccCCCCCCcccccccchhhh
Q 022927            6 LQNLRLISHIR-SNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSS   61 (290)
Q Consensus         6 ~~~~~c~~~f~-~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~   61 (290)
                      ..|..|+.+|+ +++|---|+.|-.-+|.+|--..        ....-.|..|+...
T Consensus        26 r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv~~--------~~~~W~C~VC~k~~   74 (76)
T 2csz_A           26 RTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQE--------SNGTWRCKVCSGPS   74 (76)
T ss_dssp             CBCSSSCCBCSSSCTTTSEETTTTEECCTTSEEEC--------STTCEEEHHHHSSC
T ss_pred             cchhhhCccccccccCCCcCcccChhhcccccccC--------CCCCEEEeeCchhh
Confidence            46899999999 67799999999999999994321        12567898888654

>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=85.04  E-value=0.21  Score=32.52  Aligned_cols=28  Identities=18%  Similarity=0.422  Sum_probs=22.2

Q ss_pred             cccccCCCCCcccc-ccccccccceecCCC
Q 022927            7 QNLRLISHIRSNLL-QHHCRCCGRTLCHEH   35 (290)
Q Consensus         7 ~~~~c~~~f~~~~r-rhhCr~cg~v~C~~c   35 (290)
                      .|..|+++-.+... -..| .||.+||..+
T Consensus        17 rC~~C~kk~gL~~~egf~C-rCg~~FC~~H   45 (67)
T 1x4w_A           17 RCFQCQTKLELVQQELGSC-RCGYVFCMLH   45 (67)
T ss_dssp             BCSSSCCBCCHHHHHHHCC-SSSCCCCTTT
T ss_pred             cchhhCCeecccccCceEe-cCCCEehhcc
Confidence            47789998887654 4789 7999999865

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=81.79  E-value=0.29  Score=30.06  Aligned_cols=49  Identities=16%  Similarity=0.215  Sum_probs=34.2

Q ss_pred             cccccccCCCCCccccccccccccceecCCCCCCcccccCCCCCCcccccccchhhh
Q 022927            5 DLQNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSS   61 (290)
Q Consensus         5 ~~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~   61 (290)
                      ...|-.|...|.--.+.-....||.+||..|...+....        ..|..|...+
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~Cr~~~   53 (55)
T 2ecm_A            5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG--------YRCPLCSGPS   53 (55)
T ss_dssp             CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT--------CCCTTSCCSS
T ss_pred             CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC--------CcCCCCCCcC
Confidence            356788888886544555667799999999987765421        5677776544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	290
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-14
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-07
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-04
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	0.002
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-10
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	8e-04
d1dvpa2	72	g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila me	9e-10
d1vfya_	67	g.50.1.1 (A:) vps27p protein {Baker's yeast (Sacch	2e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	8e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	8e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-09
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-06
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	9e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	7e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.004
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-06
d1wfka_	88	g.50.1.1 (A:) Zinc finger FYVE domain containing p	2e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	9e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.003
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	6e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	7e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	7e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.001
d1joca1	64	g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens)	2e-06
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-06
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.001
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.002
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-04
d1y02a2	51	g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger pro	4e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	6e-04
d1zbdb_	124	g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat	0.003

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.5 bits (174), Expect = 1e-14
 Identities = 22/70 (31%), Positives = 35/70 (50%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L  A   G    VK LL  G   N  + +  + LH+AA    T++A  L+++ A ++ K 
Sbjct: 4   LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA 63

Query: 256 AQGESPLDCA 265
              ++PL CA
Sbjct: 64  KDDQTPLHCA 73

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (138), Expect = 4e-10
 Identities = 22/82 (26%), Positives = 34/82 (41%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L  A K G     + LL      N   K G++ LH+A   N  DI  +L+  G +     
Sbjct: 136 LHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPA 195

Query: 256 AQGESPLDCAPVTLQYKMRQKM 277
             G +PL  A    Q ++ + +
Sbjct: 196 WNGYTPLHIAAKQNQVEVARSL 217

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 2e-08
 Identities = 23/94 (24%), Positives = 36/94 (38%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L  A + G     K LL      N   K   + LH AA    T++  +L+E+ AN +   
Sbjct: 37  LHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLAT 96

Query: 256 AQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS 289
             G +PL  A      +    + E + +    T 
Sbjct: 97  TAGHTPLHIAAREGHVETVLALLEKEASQACMTK 130

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 3e-08
 Identities = 26/70 (37%), Positives = 36/70 (51%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L  A   G+   VK LL    D N   K G S LH AA    TDI  +L+++GA+ +  +
Sbjct: 301 LHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVS 360

Query: 256 AQGESPLDCA 265
           + G +PL  A
Sbjct: 361 SDGTTPLAIA 370

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 6e-07
 Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 3/68 (4%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFIL---MESGANMD 252
           L  A + G    V  LL  G   N     G + L +A       +  +L    +  + + 
Sbjct: 334 LHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVL 393

Query: 253 CKNAQGES 260
             +    S
Sbjct: 394 VSDKHRMS 401

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 7e-06
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 6/98 (6%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L  A+ + +   VK LL  G   +     G + LH+AA  N+ ++A  L++ G + + ++
Sbjct: 169 LHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAES 228

Query: 256 AQGESPLDCA------PVTLQYKMRQKMEEDKNNVGST 287
            QG +PL  A       +      +Q      N  G T
Sbjct: 229 VQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLT 266

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 3e-05
 Identities = 12/40 (30%), Positives = 22/40 (55%)

Query: 226 MSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 265
           ++ LH+A+      I   L++ GA+ +  N + E+PL  A
Sbjct: 1   LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMA 40

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 1e-04
 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 6/98 (6%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L  A + G A  V  LLS+  + N  +K G++ LHL A      +A +L++ G  +D   
Sbjct: 235 LHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATT 294

Query: 256 AQGESPL------DCAPVTLQYKMRQKMEEDKNNVGST 287
             G +PL          +       Q     K  +G +
Sbjct: 295 RMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYS 332

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 17/70 (24%), Positives = 31/70 (44%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L    + G       L+  GV  +   + G + LH+A+ +    +   L++  A+++ K 
Sbjct: 268 LHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKT 327

Query: 256 AQGESPLDCA 265
             G SPL  A
Sbjct: 328 KLGYSPLHQA 337

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 57.0 bits (136), Expect = 5e-10
 Identities = 21/70 (30%), Positives = 33/70 (47%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L  A   G    +K L+    D N  D  G + LH AA + + +   IL+E+  +M+  N
Sbjct: 203 LHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVN 262

Query: 256 AQGESPLDCA 265
             G++  D A
Sbjct: 263 KVGQTAFDVA 272

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 44.7 bits (104), Expect = 5e-06
 Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 1/94 (1%)

Query: 184 KPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFI 243
           K +++++ +G     A  +GD   V +LL  G D N+ +  G++ LH A + +  D+   
Sbjct: 33  KTKVKFD-DGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKF 91

Query: 244 LMESGANMDCKNAQGESPLDCAPVTLQYKMRQKM 277
           L+E+GAN++  + +G  PL  A       + + +
Sbjct: 92  LVENGANINQPDNEGWIPLHAAASCGYLDIAEYL 125

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.2 bits (87), Expect = 8e-04
 Identities = 9/38 (23%), Positives = 14/38 (36%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAA 233
           L  A   G   A + L+    D    +K G +   +A 
Sbjct: 236 LHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVAD 273

>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 72

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 52.0 bits (124), Expect = 9e-10
 Identities = 19/43 (44%), Positives = 27/43 (62%)

Query: 21 QHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSR 63
          +HHCR CG+  C + ++ Q  LP++GI   VRVC  CF +  R
Sbjct: 29 KHHCRNCGQVFCGQCTAKQCPLPKYGIEKEVRVCDGCFAALQR 71

>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 67

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: vps27p protein
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.8 bits (121), Expect = 2e-09
 Identities = 22/47 (46%), Positives = 26/47 (55%)

Query: 21 QHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTGKD 67
          +HHCR CG   C EHSS+ + LP  GI+  VRVC  CF        D
Sbjct: 21 KHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVCDSCFEDYEFIVTD 67

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 2e-09
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 196 LRDAIKNGDAAAVKKLLS-EGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCK 254
           L  A++      V++LL  E ++ N  D  G + L LA       IA +L + GA+ DC 
Sbjct: 223 LILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG 282

Query: 255 N 255
           +
Sbjct: 283 D 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 2e-07
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 209 KKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMES-GANMDCKNAQGESPLDCA 265
             LL  G D N   ++G + L LA       +   L+E     ++  ++ G++ L  A
Sbjct: 203 HLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA 260

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (111), Expect = 8e-07
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQ-GMSLLHLAALFNRTDIAFILMESGANMDCK 254
           L  A++N D   V++LL  G + NF +++ G + LH A   +R DI  +L+  GA+   +
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 68

Query: 255 NAQGESPLDCAPVTLQYKMRQKMEE 279
              G +P   A +    K+ +    
Sbjct: 69  KKNGATPFLLAAIAGSVKLLKLFLS 93

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 8e-05
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 5/76 (6%)

Query: 196 LRDAIKNGDAAAVKKLLSE-GVDANFCDKQG----MSLLHLAALFNRTDIAFILMESGAN 250
           L DA + G    +K LL E G D N CD  G    +  L  +   +   I  +L++ GA+
Sbjct: 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD 211

Query: 251 MDCKNAQGESPLDCAP 266
           ++ +  +G++PL  A 
Sbjct: 212 VNVRGERGKTPLILAV 227

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.9 bits (128), Expect = 6e-09
 Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 3/73 (4%)

Query: 196 LRDAIKNGDAAAVKKLLSE---GVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 252
             D       + ++ L  +       N  D  G + L++AA      I   L++ GA+  
Sbjct: 227 PNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPF 286

Query: 253 CKNAQGESPLDCA 265
             N  G  P+D  
Sbjct: 287 IANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.8 bits (107), Expect = 2e-06
 Identities = 22/151 (14%), Positives = 48/151 (31%), Gaps = 4/151 (2%)

Query: 133 PPQMKSSSTTAGQSNPKPKKTENTARSRGSTSNSNFSSIFN---PGQVTNGATDKPRMEY 189
                SS     ++ P P   +N  + +                P  + N ++++     
Sbjct: 11  TSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGG 70

Query: 190 EVNGEGLRDAIKNGDAAAVKKLLSEGVDANF-CDKQGMSLLHLAALFNRTDIAFILMESG 248
             N +    +  +          +  ++ N   D+ G + LH        ++   L++ G
Sbjct: 71  SSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHG 130

Query: 249 ANMDCKNAQGESPLDCAPVTLQYKMRQKMEE 279
           +N    +  GES L  A  ++        E 
Sbjct: 131 SNRLYGDNMGESCLVKAVKSVNNYDSGTFEA 161

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.7 bits (86), Expect = 9e-04
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 199 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAA 233
           A + G+ + V  LL  G D    +K G+  +   A
Sbjct: 266 AARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 7e-08
 Identities = 23/83 (27%), Positives = 37/83 (44%)

Query: 183 DKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAF 242
           D   ++ +     L  A++N   + V+ LL  G + N     G S LH A+      +  
Sbjct: 135 DIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVR 194

Query: 243 ILMESGANMDCKNAQGESPLDCA 265
            L+ SGA+   KN   ++PL  A
Sbjct: 195 TLVRSGADSSLKNCHNDTPLMVA 217

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 2e-05
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDI 240
           L  A   G    V+ L+  G D++  +    + L +A      DI
Sbjct: 181 LHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDI 225

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 3e-04
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 225 GMSLLHLAALFNRTDIAFILM----ESGANMDCKNAQGESPLDCAPVTLQYKMRQKM 277
           G + LH+A +         L+    + G  +D  N   ++PL  A +T    + + +
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 59

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (80), Expect = 0.004
 Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 4/86 (4%)

Query: 196 LRDAIKNGDAAAVKKLLSE----GVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANM 251
           L  A+  G+  AV +L++     G + +  +    + LHLA +     +  +L+ +GA+ 
Sbjct: 7   LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP 66

Query: 252 DCKNAQGESPLDCAPVTLQYKMRQKM 277
              +  G++    A         + +
Sbjct: 67  MALDRHGQTAAHLACEHRSPTCLRAL 92

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 49.3 bits (116), Expect = 1e-07
 Identities = 12/51 (23%), Positives = 26/51 (50%)

Query: 215 GVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 265
           G + +  D+ G + + LAA   R ++   L++ GA+++  +A   +    A
Sbjct: 211 GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLA 261

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 49.3 bits (116), Expect = 2e-07
 Identities = 19/155 (12%), Positives = 44/155 (28%), Gaps = 3/155 (1%)

Query: 93  DPKVESVVKRHPVSSVLECKCGMPLCICEAPAPAASTETRPPQMKSSSTTAGQSNPKPKK 152
           D  +   +           +                   +    K       + +     
Sbjct: 119 DFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAA 178

Query: 153 TENTARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEG---LRDAIKNGDAAAVK 209
            +++ + +G T+    + + N   V     +K   + + + +G   +  A + G    V 
Sbjct: 179 RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVM 238

Query: 210 KLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFIL 244
            L+ +G      D    +   LA   N  +I  I 
Sbjct: 239 YLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 45.9 bits (107), Expect = 2e-06
 Identities = 13/83 (15%), Positives = 34/83 (40%), Gaps = 9/83 (10%)

Query: 203 GDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILM--------ESGANMDCK 254
           G  A  + +  E V+     +   ++LH  A  +  + +  L+         +GA+++  
Sbjct: 12  GSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAM 70

Query: 255 NAQGESPLDCAPVTLQYKMRQKM 277
           +    +PL  A +  + ++   +
Sbjct: 71  DCDENTPLMLAVLARRRRLVAYL 93

>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Zinc finger FYVE domain containing protein 19
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.4 bits (107), Expect = 2e-07
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 21 QHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTGKDN 68
          ++ C+ CGR  C+   S    +P+ G  T  +VC  C    +R   DN
Sbjct: 25 EYGCKNCGRAFCNGCLSFSALVPRAGN-TQQKVCKQCHTILTRGSSDN 71

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.2 bits (113), Expect = 4e-07
 Identities = 13/50 (26%), Positives = 21/50 (42%)

Query: 200 IKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGA 249
           ++   A+ ++ LL  G D       G + L  A L     +A +L   GA
Sbjct: 200 VEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.5 bits (106), Expect = 2e-06
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 219 NFCDKQGMSLLHLAALFNRTDIAFILMESGAN---MDCKNAQGESPLDCA 265
            +  + G + LHLA +         L+   A    +D +N  G++ L  A
Sbjct: 3   GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLA 52

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.8 bits (94), Expect = 9e-05
 Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 3/71 (4%)

Query: 199 AIKNGDAAAVKKLLSEGVDA---NFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           A+ +     +  LL         +  +  G + LHLAA+         L  +GA +    
Sbjct: 16  AVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAE 75

Query: 256 AQGESPLDCAP 266
             G + L  A 
Sbjct: 76  RGGHTALHLAC 86

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 12/47 (25%), Positives = 21/47 (44%)

Query: 219 NFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 265
                 G + LHLA       +  +L+++GA+   +   G +PL  A
Sbjct: 186 KPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSA 232

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.1 bits (108), Expect = 6e-07
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 9/69 (13%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFC------DKQGMSLLHLAALF---NRTDIAFILME 246
           L +A+K  D   + +  ++GVD           +   + LHLA          I   L++
Sbjct: 10  LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ 69

Query: 247 SGANMDCKN 255
           +  N+D + 
Sbjct: 70  NSGNLDKQT 78

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 47.6 bits (112), Expect = 7e-07
 Identities = 11/69 (15%), Positives = 18/69 (26%), Gaps = 5/69 (7%)

Query: 199 AIKNGDAAAVK---KLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           A   G ++A+     LL+          +      LAA      +   L E         
Sbjct: 97  AAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAM 156

Query: 256 --AQGESPL 262
             A+     
Sbjct: 157 IQAENYHAF 165

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 41.4 bits (96), Expect = 7e-05
 Identities = 12/77 (15%), Positives = 24/77 (31%), Gaps = 3/77 (3%)

Query: 192 NGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFI---LMESG 248
           N E +R  +    A   +       DA+    +   +  +AA+   +        L+ S 
Sbjct: 57  NMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSD 116

Query: 249 ANMDCKNAQGESPLDCA 265
             +    A+       A
Sbjct: 117 EIVKVIQAENYQAFRLA 133

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 37.2 bits (85), Expect = 0.001
 Identities = 11/65 (16%), Positives = 16/65 (24%), Gaps = 2/65 (3%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDK--QGMSLLHLAALFNRTDIAFILMESGANMDC 253
            R A +NG    + +L              +      LAA      +   L E       
Sbjct: 130 FRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEAT 189

Query: 254 KNAQG 258
              Q 
Sbjct: 190 AMIQA 194

>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]} Length = 64

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Eea1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (99), Expect = 2e-06
 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 21 QHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFN 59
          +HHCR CG   C E S+     P       VRVC  CFN
Sbjct: 24 RHHCRQCGNIFCAECSAKNALTP--SSKKPVRVCDACFN 60

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 2e-06
 Identities = 20/54 (37%), Positives = 30/54 (55%)

Query: 211 LLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDC 264
           LL +G   N  ++ G + LH AA  NR +IA +L+E GAN D K+    + +  
Sbjct: 89  LLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHR 142

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 5e-05
 Identities = 20/70 (28%), Positives = 34/70 (48%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           +  A   G+   +  LL      N  D +G + LHLA    R + A +L+  GA++  +N
Sbjct: 140 MHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIEN 199

Query: 256 AQGESPLDCA 265
            + ++PL  A
Sbjct: 200 KEEKTPLQVA 209

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 0.001
 Identities = 17/83 (20%), Positives = 38/83 (45%), Gaps = 1/83 (1%)

Query: 196 LRDAIKNGDAAAVKKLL-SEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCK 254
           + +   +G    +K+ + ++   A   D+   + LH A     T+I   L++ G  ++ K
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 255 NAQGESPLDCAPVTLQYKMRQKM 277
           +  G SPL  A    + ++ + +
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKAL 89

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.9 bits (99), Expect = 2e-05
 Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 1/83 (1%)

Query: 196 LRDAIKNGDAAAVKKLL-SEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCK 254
           L  A    +   V++LL S+       D+ G   LH +  F   +I   L+    N++  
Sbjct: 4   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 63

Query: 255 NAQGESPLDCAPVTLQYKMRQKM 277
           +   +S      +       + +
Sbjct: 64  DYPDDSGWTPFHIACSVGNLEVV 86

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.3 bits (82), Expect = 0.002
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 219 NFCDKQGMSLLHLAALFNRTDIAFILMES-GANMDCKNAQGESPLDCA 265
           N+ DKQG + L  A      D A +L+E  GA  D  + +G    D A
Sbjct: 166 NWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 213

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.2 bits (92), Expect = 1e-04
 Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 208 VKKLLSEGVDANF-CDKQGMSLLHLAALFNRTDIAFILMESGANMDC 253
           +  LL++G + N   DK G + LHLAA F R D A  L+++GA+ + 
Sbjct: 5   ISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANS 51

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.0 bits (89), Expect = 3e-04
 Identities = 17/70 (24%), Positives = 29/70 (41%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 255
           L  A    +  AV  LL    + +  D +  + L LAA     + +  L+++ AN +  +
Sbjct: 127 LHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITD 186

Query: 256 AQGESPLDCA 265
                P D A
Sbjct: 187 HMDRLPRDVA 196

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.6 bits (88), Expect = 3e-04
 Identities = 12/49 (24%), Positives = 17/49 (34%)

Query: 196 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFIL 244
           L  A + G   A K LL    +    D        +A+     DI  +L
Sbjct: 160 LFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]} Length = 51

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Rififylin (FYVE-RING finger protein Sakura)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (82), Expect = 4e-04
 Identities = 9/39 (23%), Positives = 12/39 (30%), Gaps = 8/39 (20%)

Query: 21 QHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFN 59
          +  C  C +  C   SS     P        R+C  C  
Sbjct: 16 KQTCLDCKKNFCMTCSSQVGNGP--------RLCLLCQR 46

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 6e-04
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 225 GMSLLHLAALFNRTDIAF----ILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKM 277
           G S LHLA +     +       +    A ++ +N   ++PL  A +T Q ++ + +
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 58

>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Effector domain of rabphilin-3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.7 bits (79), Expect = 0.003
 Identities = 6/37 (16%), Positives = 11/37 (29%), Gaps = 4/37 (10%)

Query: 22 HHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCF 58
            C  C + +C +   +            V +C  C 
Sbjct: 66 VVCEDCKKNVCTKCGVE----TSNNRPHPVWLCKICL 98

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	290
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.92
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.88
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.87
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.87
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.86
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.85
d1wfka_	88	Zinc finger FYVE domain containing protein 19 {Mou	99.84
d1joca1	64	Eea1 {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.82
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.82
d1vfya_	67	vps27p protein {Baker's yeast (Saccharomyces cerev	99.81
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.81
d1dvpa2	72	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	99.81
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.81
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.8
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.78
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.78
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.78
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.78
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.78
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.78
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.78
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.77
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.76
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.75
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.75
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.75
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.75
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.74
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.74
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.73
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.73
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.73
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.72
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.71
d1y02a2	51	Rififylin (FYVE-RING finger protein Sakura) {Human	99.65
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.55
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.54
d1zbdb_	124	Effector domain of rabphilin-3a {Rat (Rattus norve	98.95
d1wfla_	74	Zinc finger A20 domain containing protein 2 {Mouse	93.97
d1wfha_	64	Zinc finger A20 and AN1 domains containing protein	93.87
d1wffa_	85	ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus	93.18
d1z60a1	59	TFIIH p44 subunit cysteine-rich domain {Human (Hom	92.05
d1wfpa_	74	Zinc finger A20 and AN1 domains containing protein	91.61
d2fc7a1	69	Zinc finger ZZ-type-containing protein 3, ZZZ3 {Hu	89.42
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	86.45
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	81.67

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=1.2e-25  Score=169.19  Aligned_cols=97  Identities=23%  Similarity=0.233  Sum_probs=94.2

Q ss_pred             chHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHH
Q 022927          193 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYK  272 (290)
Q Consensus       193 ~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~  272 (290)
                      .|||+||++.|+.++|++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchh
Confidence            36999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCC
Q 022927          273 MRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       273 iv~~Ll~~GAdin~~~~  289 (290)
                      ++++|+++|||++.+|.
T Consensus        83 ~v~~Ll~~Gad~~~~d~   99 (118)
T d1myoa_          83 CVKLLLSKGADKTVKGP   99 (118)
T ss_dssp             HHHHHHTTCCCSSSSSS
T ss_pred             hhhhhhcccccceeeCC
Confidence            99999999999998875

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.5e-24  Score=165.80  Aligned_cols=94  Identities=24%  Similarity=0.351  Sum_probs=63.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHH
Q 022927          195 GLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMR  274 (290)
Q Consensus       195 ~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv  274 (290)
                      .||+|+..|+.++|++|+++|+|+|.+|.+|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..|+.+++
T Consensus         4 lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v   83 (130)
T d1ycsb1           4 LLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVC   83 (130)
T ss_dssp             HHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHHH
Confidence            56666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHhCCCCCCCCC
Q 022927          275 QKMEEDKNNVGSTT  288 (290)
Q Consensus       275 ~~Ll~~GAdin~~~  288 (290)
                      ++|+++|||++..+
T Consensus        84 ~~Ll~~ga~v~~~~   97 (130)
T d1ycsb1          84 KFLVESGAAVFAMT   97 (130)
T ss_dssp             HHHHHTTCCTTCCC
T ss_pred             HHHHHcCCCccccc
Confidence            66666666666543

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=4e-23  Score=162.42  Aligned_cols=117  Identities=16%  Similarity=0.198  Sum_probs=100.0

Q ss_pred             cccccccCCCCCCCCCCCCCCccccccchHHHHHHHc---CCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHH
Q 022927          166 SNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKN---GDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAF  242 (290)
Q Consensus       166 ~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~---g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~  242 (290)
                      ..+..++..|.+.+...... .....|.||||+|+..   +..+++++|+++|+++|.+|.+|+||||+|+..|+.++++
T Consensus        20 ~~l~~~~~~g~d~~~~~~~~-~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v~   98 (154)
T d1dcqa1          20 FGLLQAYADGVDLTEKIPLA-NGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLK   98 (154)
T ss_dssp             HHHHHHHHTTCCTTSBCCCS-SCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHcCCCcCCCCCcc-cCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccccccccccccc
Confidence            34445566677665443222 2234577899999985   6789999999999999999999999999999999999999


Q ss_pred             HHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCC
Q 022927          243 ILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNN  283 (290)
Q Consensus       243 ~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd  283 (290)
                      +|+++|++++.+|..|+||||+|+..|+.+++++|++.++.
T Consensus        99 ~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          99 LLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             cccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999998774

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=4.1e-23  Score=156.64  Aligned_cols=113  Identities=20%  Similarity=0.252  Sum_probs=99.6

Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCC-cHHHHHHHcCCH
Q 022927          160 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGM-SLLHLAALFNRT  238 (290)
Q Consensus       160 ~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~-TpLh~A~~~g~~  238 (290)
                      +..+..+++++|++.|++++..+..+.+       +||+| ..|+.+++++|+++|+++|.+|..|. ||||+|+..|+.
T Consensus        11 a~~G~~~~v~~Ll~~gad~n~~~~~g~t-------~l~~a-~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~   82 (125)
T d1bi7b_          11 AARGRVEEVRALLEAGANPNAPNSYGRR-------PIQVM-MMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFL   82 (125)
T ss_dssp             HHHTCHHHHHHHHTTTCCTTCCCSSSCC-------TTTSS-CTTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCH
T ss_pred             HHCCCHHHHHHHHHcCCccccccccccc-------ccccc-ccccccccccccccccccccccccccccccccccccccc
Confidence            4456778899999999999887766655       78866 47999999999999999999988765 699999999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhC
Q 022927          239 DIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEED  280 (290)
Q Consensus       239 ~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  280 (290)
                      +++++|+++|++++.+|..|+||||+|+..|+.+++++|+..
T Consensus        83 ~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Llsa  124 (125)
T d1bi7b_          83 DTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA  124 (125)
T ss_dssp             HHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSC
T ss_pred             cccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            999999999999999999999999999999999999998753

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=4.3e-22  Score=165.54  Aligned_cols=121  Identities=15%  Similarity=0.169  Sum_probs=113.1

Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHH
Q 022927          162 STSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIA  241 (290)
Q Consensus       162 s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv  241 (290)
                      .+..+++++|++.|.+++..+..+.+       |||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..++.+++
T Consensus        80 ~~~~~i~~~Ll~~~~d~~~~d~~g~t-------pL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~  152 (223)
T d1uoha_          80 AGRDEIVKALLGKGAQVNAVNQNGCT-------PLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMI  152 (223)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTCCC-------HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             ccccchhHHHhccCceeEeeCCCCCc-------hhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchh
Confidence            44567889999999998887766555       99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          242 FILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       242 ~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      ++|++.|++++.+|.+|+||||+|+..|+.+++++|+++|||++.+|.
T Consensus       153 ~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~  200 (223)
T d1uoha_         153 HILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENK  200 (223)
T ss_dssp             HHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCT
T ss_pred             hhhccccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCC
Confidence            999999999999999999999999999999999999999999999874

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.2e-22  Score=155.19  Aligned_cols=115  Identities=22%  Similarity=0.153  Sum_probs=103.0

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHH
Q 022927          161 GSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDI  240 (290)
Q Consensus       161 ~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~i  240 (290)
                      ..+..+.+++|++.|++++..+..+.+       |||+|+..|+.+++++|+++|+++|.+|.+|+||||+|+..|+.++
T Consensus        10 ~~G~~~~v~~Ll~~g~d~n~~d~~g~t-------~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~   82 (130)
T d1ycsb1          10 LEGEFDLVQRIIYEVDDPSLPNDEGIT-------ALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV   82 (130)
T ss_dssp             HHTCHHHHHHHTSTTSSCCCCCTTSCC-------HHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HcCCHHHHHHHHHcCCCcccccccccc-------ccccccccccccccccccccccccccccccCcccccccchhhHHHH
Confidence            346678899999999999988876665       9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCCCCCCCC-CCCChhhhh--hccCCHHHHHHHHhCCC
Q 022927          241 AFILMESGANMDCKNA-QGESPLDCA--PVTLQYKMRQKMEEDKN  282 (290)
Q Consensus       241 v~~Ll~~Ga~in~~d~-~G~TpL~~A--~~~g~~~iv~~Ll~~GA  282 (290)
                      +++|+++|++++..+. .|+||++++  ...|+.+++++|+..+.
T Consensus        83 v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~~  127 (130)
T d1ycsb1          83 CKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE  127 (130)
T ss_dssp             HHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHH
T ss_pred             HHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHHH
Confidence            9999999999998875 588887655  57889999999997654

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.6e-22  Score=152.14  Aligned_cols=97  Identities=16%  Similarity=0.236  Sum_probs=91.0

Q ss_pred             cchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC-ChhhhhhccCC
Q 022927          192 NGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGE-SPLDCAPVTLQ  270 (290)
Q Consensus       192 ~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~-TpL~~A~~~g~  270 (290)
                      +.++||+|+..|++++|++||++|+++|.+|.+|.||||+|+ .|+.+++++|+++|++++.++..|. ||||+|+..|+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF   81 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            345899999999999999999999999999999999999775 7999999999999999999998876 69999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCC
Q 022927          271 YKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       271 ~~iv~~Ll~~GAdin~~~~  289 (290)
                      .+++++|+++|+|++.+|.
T Consensus        82 ~~~v~~Ll~~ga~~~~~d~  100 (125)
T d1bi7b_          82 LDTLVVLHRAGARLDVRDA  100 (125)
T ss_dssp             HHHHHHHHHHTCCSSCCCT
T ss_pred             ccccccccccccccccccC
Confidence            9999999999999999875

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=1.4e-22  Score=152.15  Aligned_cols=100  Identities=21%  Similarity=0.234  Sum_probs=93.1

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHH
Q 022927          161 GSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDI  240 (290)
Q Consensus       161 ~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~i  240 (290)
                      ..++.+.+++|++.|++++..+..+.+       |||+|+..|+.+++++|+++|+++|.+|.+|+||||+|+..|+.++
T Consensus        11 ~~g~~~~v~~Ll~~g~d~n~~~~~g~t-------~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~~   83 (118)
T d1myoa_          11 KNGDLDEVKDYVAKGEDVNRTLEGGRK-------PLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSC   83 (118)
T ss_dssp             HTTCHHHHHHHHTTTCCCCCCSSSSCC-------TTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCHH
T ss_pred             HCCCHHHHHHHHHhhhccccccccccc-------cccccccccccccccccccccceeeecccccccchhhhhhcCchhh
Confidence            456778899999999999888776655       8999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCChhhhhhc
Q 022927          241 AFILMESGANMDCKNAQGESPLDCAPV  267 (290)
Q Consensus       241 v~~Ll~~Ga~in~~d~~G~TpL~~A~~  267 (290)
                      +++|+++|+|++.+|.+|+||||+|..
T Consensus        84 v~~Ll~~Gad~~~~d~~G~t~l~~a~~  110 (118)
T d1myoa_          84 VKLLLSKGADKTVKGPDGLTALEATDN  110 (118)
T ss_dssp             HHHHHTTCCCSSSSSSSTCCCCCTCSS
T ss_pred             hhhhhcccccceeeCCCCCCHHHHHhH
Confidence            999999999999999999999999954

>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Zinc finger FYVE domain containing protein 19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=4.5e-22  Score=139.56  Aligned_cols=59  Identities=22%  Similarity=0.439  Sum_probs=54.6

Q ss_pred             cccccccCCCCCccccccccccccceecCCCCCCcccccCCCCCCcccccccchhhhccc
Q 022927            5 DLQNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRT   64 (290)
Q Consensus         5 ~~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~   64 (290)
                      ..+|+.|+++|++|+||||||.||+|||..|+.+++.||..+ .+++|||+.||+.+...
T Consensus         9 ~s~C~~C~~~Fs~~~rrhhCr~CG~vfC~~Cs~~~~~lp~~~-~~~~RVC~~C~~~l~~~   67 (88)
T d1wfka_           9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAG-NTQQKVCKQCHTILTRG   67 (88)
T ss_dssp             CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTT-SEEEEECHHHHHHHHHC
T ss_pred             cCcCcccCchhccccccccccccChhhChHHhCCccccCCCC-CCCCeECHHHHHHHHhc
Confidence            357999999999999999999999999999999999999888 68999999999998654

>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Eea1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=6e-22  Score=130.91  Aligned_cols=57  Identities=30%  Similarity=0.570  Sum_probs=52.1

Q ss_pred             ccccccccCCCCCccccccccccccceecCCCCCCcccccCCCCCCcccccccchhhhc
Q 022927            4 HDLQNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSS   62 (290)
Q Consensus         4 ~~~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~   62 (290)
                      ...+|+.|+.+|++++||||||.||+|||+.|+.++..+|..+  .++|||+.||+.|+
T Consensus         7 ~~~~C~~C~~~F~~~~rrHHCR~CG~v~C~~Cs~~~~~~~~~~--~~~RVC~~C~~~l~   63 (64)
T d1joca1           7 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSSK--KPVRVCDACFNDLQ   63 (64)
T ss_dssp             GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEECCTTCS--SCEEECHHHHHHTT
T ss_pred             cCCcCcCcCCcccCCccccchhhhCCeecccccCCceecCCCC--CccEehHHHHHHhc
Confidence            3467999999999999999999999999999999999988654  89999999999885

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=2.2e-20  Score=157.27  Aligned_cols=106  Identities=20%  Similarity=0.168  Sum_probs=94.2

Q ss_pred             ccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCccc-ccCCCcHHHHHHHcCCHHHHHHHHHCCC
Q 022927          171 IFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFC-DKQGMSLLHLAALFNRTDIAFILMESGA  249 (290)
Q Consensus       171 Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~-d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga  249 (290)
                      +...+..++..+..+       .||||+|+..++.+++++|++.+++.+.. +..|.||||+|+..|+.+++++|+++|+
T Consensus       144 ~~~~~~~in~~d~~g-------~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~ga  216 (255)
T d1oy3d_         144 DEDWRLQLEAENYDG-------HTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA  216 (255)
T ss_dssp             CCCGGGGTTCCCTTS-------CCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             hhhcCcccccccccC-------cccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCC
Confidence            334455555555444       45999999999999999999999998865 5789999999999999999999999999


Q ss_pred             CCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCC
Q 022927          250 NMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNN  283 (290)
Q Consensus       250 ~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd  283 (290)
                      +++.+|..|+||||+|+..++.+++++|+++||+
T Consensus       217 din~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         217 DPTARMYGGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             CTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999997

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.9e-20  Score=159.74  Aligned_cols=123  Identities=18%  Similarity=0.171  Sum_probs=104.2

Q ss_pred             CCCCCcccccccC-CCCCCCCCCCCCCccccccchHHHHHHH----cCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHc
Q 022927          161 GSTSNSNFSSIFN-PGQVTNGATDKPRMEYEVNGEGLRDAIK----NGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALF  235 (290)
Q Consensus       161 ~s~~~~~~~~Ll~-~g~~~~~~~~~~~~~~~~~~t~Lh~A~~----~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~  235 (290)
                      ..+..+.+++|++ .|++++..+..+..       +++.+..    .+..+++++|+++|++++.+|..|.||||+|+..
T Consensus       157 ~~~~~~~~~~Ll~~~~~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~  229 (285)
T d1wdya_         157 EKGHVEVLKILLDEMGADVNACDNMGRN-------ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK  229 (285)
T ss_dssp             HHTCHHHHHHHHHTSCCCTTCCCTTSCC-------HHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHT
T ss_pred             HcCCHHHHHHHHhccCCCcccccCCCCc-------ccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhc
Confidence            3345567777875 47788777766554       4444333    2345689999999999999999999999999999


Q ss_pred             CCHHHHHHHHHC-CCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCCC
Q 022927          236 NRTDIAFILMES-GANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTSV  290 (290)
Q Consensus       236 g~~~iv~~Ll~~-Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~~  290 (290)
                      |+.+++++||++ |++++.+|.+|.||||+|++.|+.+++++||++|||+|+.|.|
T Consensus       230 ~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d~~  285 (285)
T d1wdya_         230 KHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDLV  285 (285)
T ss_dssp             TCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSCC
T ss_pred             CcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCc
Confidence            999999999985 9999999999999999999999999999999999999999975

>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: vps27p protein
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=6.9e-22  Score=131.84  Aligned_cols=58  Identities=36%  Similarity=0.728  Sum_probs=54.1

Q ss_pred             cccccccCCCCCccccccccccccceecCCCCCCcccccCCCCCCcccccccchhhhc
Q 022927            5 DLQNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSS   62 (290)
Q Consensus         5 ~~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~   62 (290)
                      ..+|+.|+++|++|+||||||.||++||..|+++++++|.++...++|||+.||+.+.
T Consensus         5 ~~~C~~C~~~F~~~~rkhhCr~CG~~fC~~Cs~~~~~l~~~~~~~p~RVC~~C~~~~~   62 (67)
T d1vfya_           5 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVCDSCFEDYE   62 (67)
T ss_dssp             CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEEEEEGGGTEEEEEEECHHHHHHHH
T ss_pred             CcccccCCCcccCcccccccccCCCEecccccCCcEECcccCCCCCcEeCHHHHHHHH
Confidence            3579999999999999999999999999999999999999988899999999998764

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=5.8e-20  Score=143.95  Aligned_cols=113  Identities=20%  Similarity=0.237  Sum_probs=98.9

Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHH
Q 022927          160 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD  239 (290)
Q Consensus       160 ~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~  239 (290)
                      +..+..+.++.|+..+.+++..+..+..       +|+.++..++.+++++++++|+++|.+|..|+||||+|+..|+.+
T Consensus        43 A~~~~~~~v~~Ll~~~~~~~~~~~~~~~-------~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~  115 (156)
T d1bd8a_          43 MMFGSTAIALELLKQGASPNVQDTSGTS-------PVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTA  115 (156)
T ss_dssp             SCTTCHHHHHHHHHTTCCTTCCCTTSCC-------HHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHH
T ss_pred             cccccccccccccccccccccccccccc-------ccccccccccccccccccccccccccccCCCCeeecccccccccc
Confidence            3456678888899888888776655544       899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhC
Q 022927          240 IAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEED  280 (290)
Q Consensus       240 iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  280 (290)
                      ++++|+ .|++++.+|.+|+||||+|+..|+.+|+++|++|
T Consensus       116 i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         116 VVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            999887 7899999999999999999999999999999876

>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.81  E-value=1.4e-21  Score=132.00  Aligned_cols=58  Identities=34%  Similarity=0.725  Sum_probs=54.6

Q ss_pred             ccccccCCCCCccccccccccccceecCCCCCCcccccCCCCCCcccccccchhhhcc
Q 022927            6 LQNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSR   63 (290)
Q Consensus         6 ~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~   63 (290)
                      ..|+.|+++|++|+||||||.||++||..|+.++..||.++..+|+|||+.||+.|+.
T Consensus        14 ~~C~~C~~~F~~~~rrhhCr~CG~~~C~~C~~~~~~lp~~~~~~p~RVC~~C~~~l~~   71 (72)
T d1dvpa2          14 RVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYGIEKEVRVCDGCFAALQR   71 (72)
T ss_dssp             SBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEEEEEGGGTEEEEEEECHHHHHHHHH
T ss_pred             CccccCCCcccCccccccccccCCeeChhhhCCceECcccCCCCCCEeCHHHHHHHHC
Confidence            5699999999999999999999999999999999999998888999999999998853

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.81  E-value=4.7e-20  Score=158.19  Aligned_cols=126  Identities=20%  Similarity=0.216  Sum_probs=109.6

Q ss_pred             ccCCCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcc----------------
Q 022927          157 ARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANF----------------  220 (290)
Q Consensus       157 ~~~~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~----------------  220 (290)
                      ......++.+.+++|++.|++++..+..+.+       |||+|+..|+.++|++|+++|.+.+.                
T Consensus        45 ~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T-------~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~  117 (291)
T d1s70b_          45 LAACSSGDTEEVLRLLERGADINYANVDGLT-------ALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG  117 (291)
T ss_dssp             HHHHHHTCHHHHHHHHHHCCCTTCBCTTCCB-------HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCccCCCCCc-------HHHHHHhcCCceeeeeeccccccccccccccccccccccccc
Confidence            3345678889999999999999988777665       89999999999999999988764332                


Q ss_pred             -----------------------------------------------------------------------------ccc
Q 022927          221 -----------------------------------------------------------------------------CDK  223 (290)
Q Consensus       221 -----------------------------------------------------------------------------~d~  223 (290)
                                                                                                   .+.
T Consensus       118 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (291)
T d1s70b_         118 YLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAK  197 (291)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTT
T ss_pred             ccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccC
Confidence                                                                                         234


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          224 QGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       224 ~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      .|.||||+|+..|+.+++++|+++|+++|.++..|+||||+|+..|+.++|++|+++|||++++|.
T Consensus       198 ~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~  263 (291)
T d1s70b_         198 SGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNK  263 (291)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             CCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence            567888889999999999999999999999999999999999999999999999999999999875

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=7e-20  Score=151.92  Aligned_cols=112  Identities=21%  Similarity=0.245  Sum_probs=103.4

Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHH
Q 022927          160 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD  239 (290)
Q Consensus       160 ~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~  239 (290)
                      ...+..+++++|++.|++++..+..+.+       |||+|+..++.+++++|++.|.++|.+|.+|+||||+|+..|+.+
T Consensus       111 ~~~~~~e~~~~Ll~~g~d~~~~~~~~~t-------~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~  183 (223)
T d1uoha_         111 ASKNRHEIAVMLLEGGANPDAKDHYEAT-------AMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVE  183 (223)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCC-------HHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHcCCHHHHHHHHHCCCCCCCcCCCCCc-------cchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHH
Confidence            3456678899999999999887766555       999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHh
Q 022927          240 IAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEE  279 (290)
Q Consensus       240 iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~  279 (290)
                      ++++||++|++++.+|.+|+||||+|. .|+.+++++||+
T Consensus       184 ~v~~LL~~Gad~~~~d~~g~tpl~~A~-~~~~~i~~~Ll~  222 (223)
T d1uoha_         184 EAKLLVSQGASIYIENKEEKTPLQVAK-GGLGLILKRMVE  222 (223)
T ss_dssp             HHHHHHHTTCCSCCCCTTSCCHHHHCC-TTHHHHHHHHHC
T ss_pred             HHHHHHHCCCCCCCCCCCCCCHHHHHH-CCCHHHHhcccC
Confidence            999999999999999999999999985 799999999986

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.2e-19  Score=145.21  Aligned_cols=65  Identities=20%  Similarity=0.202  Sum_probs=51.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          225 GMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       225 g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      |.++|++|+..+...++++++++|.+++.+|..|.||||+|+..|+.+++++|+++|||+|++|.
T Consensus       144 ~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~  208 (228)
T d1k1aa_         144 GRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNC  208 (228)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred             hhhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Confidence            44555666666666666666667777777888899999999999999999999999999998864

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.78  E-value=3.4e-19  Score=145.38  Aligned_cols=108  Identities=19%  Similarity=0.175  Sum_probs=98.2

Q ss_pred             CCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHH
Q 022927          163 TSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAF  242 (290)
Q Consensus       163 ~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~  242 (290)
                      ......+.|...+.+++..+..+.       |+|++++..+..++++.|++.+.+++..|..|.||||+|+..|+.++++
T Consensus       101 ~~~~~~~~L~~~~~~~~~~~~~~~-------t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~  173 (209)
T d1ot8a_         101 AIEGMVEDLITADADINAADNSGK-------TALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASK  173 (209)
T ss_dssp             TCTTHHHHHHHTTCCTTCBCTTSC-------BHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             cchhhhhhhhhhcccccccCCCCC-------CcchhhcccCcceeeeeeccccccccccccccccccchhccccHHHHHH
Confidence            334555777888888877765555       4999999999999999999999999999999999999999999999999


Q ss_pred             HHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHH
Q 022927          243 ILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKM  277 (290)
Q Consensus       243 ~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~L  277 (290)
                      +||++|+|++.+|..|+||||+|++.|+.++|++|
T Consensus       174 ~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         174 ALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            99999999999999999999999999999999987

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.6e-19  Score=140.13  Aligned_cols=120  Identities=18%  Similarity=0.210  Sum_probs=106.9

Q ss_pred             CCCCCcccccccCC-CCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHH
Q 022927          161 GSTSNSNFSSIFNP-GQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD  239 (290)
Q Consensus       161 ~s~~~~~~~~Ll~~-g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~  239 (290)
                      ..++.+.++.|++. +.+++..+..+.+       |||+|+ .|+.+++++||+++.+++..+..|.+||++++..++.+
T Consensus        11 ~~g~~~~vk~lL~~~~~~~n~~d~~g~t-------~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~   82 (156)
T d1bd8a_          11 ARGDVQEVRRLLHRELVHPDALNRFGKT-------ALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHTCHHHHHHHHHTTCCCTTCCCTTSCC-------HHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HcCCHHHHHHHHHhCCCCCCccCCCCCc-------cccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            34566778888764 7788877766655       999986 58899999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          240 IAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       240 iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      ++++++++|+++|.+|..|+||||+|+..|+.+++++|+ .|++++.+|.
T Consensus        83 ~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~  131 (156)
T d1bd8a_          83 TLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDA  131 (156)
T ss_dssp             HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCT
T ss_pred             ccccccccccccccccCCCCeeecccccccccccccccc-ccccccccCC
Confidence            999999999999999999999999999999999999887 7899998764

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.78  E-value=5e-20  Score=150.41  Aligned_cols=117  Identities=29%  Similarity=0.347  Sum_probs=100.3

Q ss_pred             cccccccCCCCCCCCC-CCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCc-------------------------
Q 022927          166 SNFSSIFNPGQVTNGA-TDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDAN-------------------------  219 (290)
Q Consensus       166 ~~~~~Ll~~g~~~~~~-~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn-------------------------  219 (290)
                      ++++.|++.|++++.. +..+.       ||||+|+..|+.+++++||+.|+++|                         
T Consensus         3 ~~v~~Ll~~g~din~~~d~~G~-------t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~   75 (209)
T d1ot8a_           3 QVISDLLAQGAELNATMDKTGE-------TSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQIL   75 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHCCCCcCcCcCCCCC-------CHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccc
Confidence            4667788888887653 44444       48888888888888888888876554                         


Q ss_pred             ------------------------------------------ccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Q 022927          220 ------------------------------------------FCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQ  257 (290)
Q Consensus       220 ------------------------------------------~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~  257 (290)
                                                                ..+..|+|||++++..+..++++.|++++++++.+|..
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~  155 (209)
T d1ot8a_          76 LRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDK  155 (209)
T ss_dssp             HTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             ccccccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccc
Confidence                                                      35677889999999999999999999999999999999


Q ss_pred             CCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          258 GESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       258 G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      |.||||+|+..|+.+++++||++|||++.+|.
T Consensus       156 g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~  187 (209)
T d1ot8a_         156 DETPLFLAAREGSYEASKALLDNFANREITDH  187 (209)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             cccccchhccccHHHHHHHHHHCCCCCCCcCC
Confidence            99999999999999999999999999998874

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.4e-19  Score=161.92  Aligned_cols=120  Identities=24%  Similarity=0.244  Sum_probs=100.0

Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHH
Q 022927          162 STSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIA  241 (290)
Q Consensus       162 s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv  241 (290)
                      .+..+++++|++.|++++..+....+       |||.++..++.++++++++.|+++|.+|.+|.||||+|+..|+.+++
T Consensus       274 ~~~~~i~~~Ll~~g~~~~~~~~~~~t-------~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv  346 (408)
T d1n11a_         274 EGHVPVADVLIKHGVMVDATTRMGYT-------PLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIV  346 (408)
T ss_dssp             HTCHHHHHHHHHHTCCTTCCCSSCCC-------HHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             cCcHHHHHHHHHCCCccccccccccc-------cchhhcccCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHH
Confidence            34456778888888887776655444       89999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHH---hCCCCCCCCC
Q 022927          242 FILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKME---EDKNNVGSTT  288 (290)
Q Consensus       242 ~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll---~~GAdin~~~  288 (290)
                      ++|+++||++|.+|.+|+||||+|++.|+.++|++|.   ++++++...+
T Consensus       347 ~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~~~~~~~~~~~~~~  396 (408)
T d1n11a_         347 TLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSD  396 (408)
T ss_dssp             HHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHHCCCCSSCC---
T ss_pred             HHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHHHhccccccccc
Confidence            9999999999999999999999999999999887653   4566665544

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=2.5e-19  Score=148.21  Aligned_cols=112  Identities=21%  Similarity=0.199  Sum_probs=100.2

Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCC-CCCcccccCCCcHHHHHHHcCCHHH
Q 022927          162 STSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEG-VDANFCDKQGMSLLHLAALFNRTDI  240 (290)
Q Consensus       162 s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g-~~vn~~d~~g~TpLh~A~~~g~~~i  240 (290)
                      .+..++++.|+..|...+..+..+++       +||+|+..|+.+++++|++.| .++|.+|.+|+||||+|+..|+.++
T Consensus       115 ~~~~~~~~~l~~~~~~~~~~~~~g~t-------~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~  187 (229)
T d1ixva_         115 KKWFEVSQFLIENGASVRIKDKFNQI-------PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDA  187 (229)
T ss_dssp             TTCHHHHHHHHHTTCCSCCCCTTSCC-------HHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHH
T ss_pred             cchhhhhhhhhhhcccccccCCCCCC-------ccchhhhcccccccccccccccccccccccccCCchhhhcccccHHH
Confidence            34566778888988888777665554       999999999999999999987 6899999999999999999999999


Q ss_pred             HHHHHH-CCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCC
Q 022927          241 AFILME-SGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNN  283 (290)
Q Consensus       241 v~~Ll~-~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd  283 (290)
                      +++||+ +|++++.+|..|+||||+|+   +.+++++|+++|||
T Consensus       188 v~~Ll~~~gad~~~~d~~g~t~l~~A~---~~~~~~~Ll~~g~d  228 (229)
T d1ixva_         188 AVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVVD  228 (229)
T ss_dssp             HHHHHHHHCCCSCCCCTTSCCTGGGCS---CHHHHHHHHHHCCC
T ss_pred             HHHHHHhcCCCCCCcCCCCCCHHHHHh---hHHHHHHHHHcCCC
Confidence            999997 59999999999999999998   46899999999997

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=6.8e-19  Score=152.60  Aligned_cols=99  Identities=13%  Similarity=0.104  Sum_probs=83.4

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCH-------HHHHH--------------------
Q 022927          191 VNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRT-------DIAFI--------------------  243 (290)
Q Consensus       191 ~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~-------~iv~~--------------------  243 (290)
                      .|.||||+|+..|+.++|++||++|++++.+|..|+||||+|+..++.       +++++                    
T Consensus       106 ~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~lh~~~  185 (301)
T d1sw6a_         106 HGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHII  185 (301)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHHHHHH
Confidence            355699999999999999999999999999999999999999976541       23322                    


Q ss_pred             ----------------------HHHCCC-------------------------------------CCCCCCCCCCChhhh
Q 022927          244 ----------------------LMESGA-------------------------------------NMDCKNAQGESPLDC  264 (290)
Q Consensus       244 ----------------------Ll~~Ga-------------------------------------~in~~d~~G~TpL~~  264 (290)
                                            ++..+.                                     .+|.+|.+|+||||+
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh~  265 (301)
T d1sw6a_         186 ITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNI  265 (301)
T ss_dssp             HHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHH
T ss_pred             HHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHHHH
Confidence                                  222221                                     168889999999999


Q ss_pred             hhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          265 APVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       265 A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      |++.|+.++|++|+++|||+++.|+
T Consensus       266 A~~~g~~~iv~~Ll~~GAd~~~~n~  290 (301)
T d1sw6a_         266 AARLGNISIVDALLDYGADPFIANK  290 (301)
T ss_dssp             HHHHCCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCC
Confidence            9999999999999999999999985

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=7.9e-19  Score=137.51  Aligned_cols=95  Identities=20%  Similarity=0.253  Sum_probs=87.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCccc------ccCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCCChhhhh
Q 022927          195 GLRDAIKNGDAAAVKKLLSEGVDANFC------DKQGMSLLHLAALF---NRTDIAFILMESGANMDCKNAQGESPLDCA  265 (290)
Q Consensus       195 ~Lh~A~~~g~~~~v~~Ll~~g~~vn~~------d~~g~TpLh~A~~~---g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A  265 (290)
                      .|+.|+..+++..+..++..|+|++..      +..|+||||+|+..   ++.+++++|+++|+++|.+|..|+||||+|
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A   88 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC   88 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccc
Confidence            477899999999999999999987765      67899999999975   678999999999999999999999999999


Q ss_pred             hccCCHHHHHHHHhCCCCCCCCCC
Q 022927          266 PVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       266 ~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      +..|+.+++++|+++|||++.+|.
T Consensus        89 ~~~~~~~~v~~Ll~~gad~~~~d~  112 (154)
T d1dcqa1          89 CLTDNAECLKLLLRGKASIEIANE  112 (154)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             cccccccccccccccCccccccCC
Confidence            999999999999999999999875

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=3e-19  Score=150.20  Aligned_cols=96  Identities=18%  Similarity=0.157  Sum_probs=89.0

Q ss_pred             cccchHHHHHHHcCCHHHHHHHHHCCCC---CcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhh
Q 022927          190 EVNGEGLRDAIKNGDAAAVKKLLSEGVD---ANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAP  266 (290)
Q Consensus       190 ~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~---vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~  266 (290)
                      +.|.||||+|+..|+.+++++||++|++   ++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus         7 ~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~   86 (255)
T d1oy3d_           7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLAC   86 (255)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHT
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhhh
Confidence            4567799999999999999999999988   6677889999999999999999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHhCCCCCC
Q 022927          267 VTLQYKMRQKMEEDKNNVG  285 (290)
Q Consensus       267 ~~g~~~iv~~Ll~~GAdin  285 (290)
                      ..++.+++++|++.+...+
T Consensus        87 ~~~~~~~~~~Ll~~~~~~~  105 (255)
T d1oy3d_          87 RVRAHTCACVLLQPRPSHP  105 (255)
T ss_dssp             TTTCHHHHHHHSSSCCSSC
T ss_pred             ccCchHHHHHHHhhccchh
Confidence            9999999999998876543

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.77  E-value=1.7e-18  Score=146.87  Aligned_cols=129  Identities=19%  Similarity=0.175  Sum_probs=105.3

Q ss_pred             cccccCCCCCCCcccccc--------cCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCC
Q 022927          154 ENTARSRGSTSNSNFSSI--------FNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQG  225 (290)
Q Consensus       154 ~~~~~~~~s~~~~~~~~L--------l~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g  225 (290)
                      +...-.+..+..++++.|        +..|++++..+..+.+       |||+|+..|+.++|++||++|++++.+|.+|
T Consensus        35 T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~T-------pLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g  107 (277)
T d2fo1e1          35 TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENT-------PLMLAVLARRRRLVAYLMKAGADPTIYNKSE  107 (277)
T ss_dssp             CHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCC-------HHHHHHHHTCHHHHHHHHHTTCCSCCCCTTC
T ss_pred             cHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCe-------eeccccccccccccccccccccccccccccc
Confidence            344444667788888776        5678999988877665       9999999999999999999999999888888


Q ss_pred             CcHHHHHHHcCC--------------------------------------------------------------------
Q 022927          226 MSLLHLAALFNR--------------------------------------------------------------------  237 (290)
Q Consensus       226 ~TpLh~A~~~g~--------------------------------------------------------------------  237 (290)
                      .|||++|+..++                                                                    
T Consensus       108 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  187 (277)
T d2fo1e1         108 RSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKG  187 (277)
T ss_dssp             CCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCC
T ss_pred             cccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCC
Confidence            888888775443                                                                    


Q ss_pred             ------------HHHHHH-HHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          238 ------------TDIAFI-LMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       238 ------------~~iv~~-Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                                  .+++++ |...|.+++.+|..|+||||+|+..|+.+++++|+++|||+|++|.
T Consensus       188 ~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~  252 (277)
T d2fo1e1         188 RTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDA  252 (277)
T ss_dssp             CCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCS
T ss_pred             CCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCC
Confidence                        334433 3356778888999999999999999999999999999999998874

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.5e-18  Score=143.32  Aligned_cols=114  Identities=19%  Similarity=0.196  Sum_probs=68.2

Q ss_pred             ccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHc-------------
Q 022927          169 SSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALF-------------  235 (290)
Q Consensus       169 ~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~-------------  235 (290)
                      +.+...|++++..+..+.+       |||+|+..|+.+++++|+++|++++..|..|.||||+|+..             
T Consensus        23 ~~~~~~~~~in~~d~~g~T-------pLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~   95 (221)
T d1iknd_          23 RQVKGDLAFLNFQNNLQQT-------PLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSC   95 (221)
T ss_dssp             C-----CCCCCCCCTTCCC-------HHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHST
T ss_pred             HHHHhCCCCcccCCCCCCc-------cccccccccccccccccccccccccccccccccccccccccccccccchhhhhc
Confidence            3444445555554444333       56666666666666666655655555555555555444444             


Q ss_pred             --------------------------CCHHHHHHHHHCCCCCCCCC-CCCCChhhhhhccCCHHHHHHHHhCCCCCCCCC
Q 022927          236 --------------------------NRTDIAFILMESGANMDCKN-AQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT  288 (290)
Q Consensus       236 --------------------------g~~~iv~~Ll~~Ga~in~~d-~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~  288 (290)
                                                ++.+++++|+..|+.++.++ .+|+||||+|+..|+.+++++|+++|||++++|
T Consensus        96 ~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~  175 (221)
T d1iknd_          96 TTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVT  175 (221)
T ss_dssp             TTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCC
T ss_pred             ccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCcccccC
Confidence                                      44444455555566665554 568888888888888888888888888888776


Q ss_pred             C
Q 022927          289 S  289 (290)
Q Consensus       289 ~  289 (290)
                      .
T Consensus       176 ~  176 (221)
T d1iknd_         176 Y  176 (221)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.2e-18  Score=142.30  Aligned_cols=124  Identities=19%  Similarity=0.168  Sum_probs=105.7

Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCccc--------------------------------cccchHHHHHHHcCCHHH
Q 022927          160 RGSTSNSNFSSIFNPGQVTNGATDKPRMEY--------------------------------EVNGEGLRDAIKNGDAAA  207 (290)
Q Consensus       160 ~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~--------------------------------~~~~t~Lh~A~~~g~~~~  207 (290)
                      ...+..+++++|++.|++++..+..+.++.                                ..+.|+||+|+..++.++
T Consensus        47 ~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~  126 (221)
T d1iknd_          47 VITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGI  126 (221)
T ss_dssp             HHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhh
Confidence            345566777888888887777666554432                                125678999999999999


Q ss_pred             HHHHHHCCCCCcccc-cCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCC
Q 022927          208 VKKLLSEGVDANFCD-KQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNN  283 (290)
Q Consensus       208 v~~Ll~~g~~vn~~d-~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd  283 (290)
                      +++|+..|++++..+ .+|+||||+|+..|+.+++++|+++|+|++.+|.+|+||||+|+..++.+++++|++.+.+
T Consensus       127 ~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         127 VELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             HHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             eeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            999999999988776 5799999999999999999999999999999999999999999999999999999998765

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.3e-18  Score=134.11  Aligned_cols=113  Identities=20%  Similarity=0.199  Sum_probs=84.2

Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHH
Q 022927          162 STSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIA  241 (290)
Q Consensus       162 s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv  241 (290)
                      .+..+++++|++.|++++..+..+.+       +|+.++..+..+.++.|++.+.+++..|..|.++||+|+..++.+++
T Consensus        43 ~~~~ei~~~Ll~~~a~~~~~~~~~~~-------~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  115 (156)
T d1ihba_          43 LGNPEIARRLLLRGANPDLKDRTGFA-------VIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV  115 (156)
T ss_dssp             SSCHHHHHHHHHTTCCTTCCCTTSCC-------HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             cccccccccccccccccccccccCcc-------ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            45556667777777666655544443       67777777777777777777777777777788888888888888888


Q ss_pred             HHHHHCCC-CCCCCCCCCCChhhhhhccCCHHHHHHHHhCC
Q 022927          242 FILMESGA-NMDCKNAQGESPLDCAPVTLQYKMRQKMEEDK  281 (290)
Q Consensus       242 ~~Ll~~Ga-~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G  281 (290)
                      ++|+++|+ +++.+|.+|+||||+|+..++.+++++|+++|
T Consensus       116 ~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         116 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            88887765 77788888888888888888888888888876

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.9e-18  Score=154.47  Aligned_cols=121  Identities=16%  Similarity=0.208  Sum_probs=109.7

Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHH
Q 022927          162 STSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIA  241 (290)
Q Consensus       162 s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv  241 (290)
                      .+..+.++.++..+...+..+..+.+       ||+.|+..++.+++++|+++|++++..+..+.||||.++..++.+++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~g~~-------~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~  313 (408)
T d1n11a_         241 EGHAEMVALLLSKQANGNLGNKSGLT-------PLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLV  313 (408)
T ss_dssp             TTCHHHHHHHHTTTCCTTCCCTTCCC-------HHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHH
T ss_pred             hCcHhHhhhhhccccccccccCCCCC-------hhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceee
Confidence            34455667777777777766655544       89999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCCCCCC
Q 022927          242 FILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       242 ~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin~~~~  289 (290)
                      ++|+++|+++|.+|.+|.||||+|++.|+.++|++|+++|||+|++|+
T Consensus       314 ~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~  361 (408)
T d1n11a_         314 KFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSS  361 (408)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCS
T ss_pred             eeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Confidence            999999999999999999999999999999999999999999999874

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.9e-18  Score=133.57  Aligned_cols=121  Identities=20%  Similarity=0.290  Sum_probs=109.5

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHH
Q 022927          161 GSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDI  240 (290)
Q Consensus       161 ~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~i  240 (290)
                      ..++.+.++.|++.|++++..+..+.+       |||+|+ .|+.+++++|+++|++++..+..|.++|+.++..++.++
T Consensus        10 ~~g~~~~v~~Ll~~g~d~n~~d~~g~T-------pL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_          10 ARGDLEQLTSLLQNNVNVNAQNGFGRT-------ALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHTCHHHHHHHTTSCCCTTCCCTTSCC-------HHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HcCCHHHHHHHHHCCCCcCccCCcccc-------cccccc-cccccccccccccccccccccccCccccccccccccccc
Confidence            346778899999999999988766655       999886 789999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCCC-CCCCCCC
Q 022927          241 AFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKN-NVGSTTS  289 (290)
Q Consensus       241 v~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA-din~~~~  289 (290)
                      +++|+.++.+++..|..|.+||++|+..++.+++++|+++|+ +++.+|.
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~  131 (156)
T d1ihba_          82 LQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNH  131 (156)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence            999999999999999999999999999999999999999987 7777664

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=3.7e-18  Score=132.53  Aligned_cols=110  Identities=17%  Similarity=0.207  Sum_probs=66.8

Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHH---------------------------
Q 022927          160 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLL---------------------------  212 (290)
Q Consensus       160 ~~s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll---------------------------  212 (290)
                      +..++.+++++||+.|++.+ .+..       |.||||+|+..++.++++.++                           
T Consensus        10 a~~g~~~~v~~LL~~ga~~~-~~~~-------g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (153)
T d1awcb_          10 ARAGQDDEVRILMANGAPFT-TDWL-------GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHTCHHHHHHHHHHTCCCC-CCTT-------CCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             HHCCCHHHHHHHHHcCCCcc-cccC-------CCccccccccccccccccccccccccccccccccccccccccccccce
Confidence            34566677888888887654 2333       344777777776655554444                           


Q ss_pred             ------HCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHH
Q 022927          213 ------SEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKM  277 (290)
Q Consensus       213 ------~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~L  277 (290)
                            .+|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..|+.+++++|
T Consensus        82 ~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          82 IVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence                  44445555556666666666666666666666666666666666666666666666666666554

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.74  E-value=1.3e-18  Score=147.68  Aligned_cols=111  Identities=23%  Similarity=0.183  Sum_probs=95.8

Q ss_pred             CCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHH--------HHCCCCCcccccCCCcHHHHHHH
Q 022927          163 TSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKL--------LSEGVDANFCDKQGMSLLHLAAL  234 (290)
Q Consensus       163 ~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~L--------l~~g~~vn~~d~~g~TpLh~A~~  234 (290)
                      ++..+.+.|.+.+.+.....        .|.||||+|+..|+.++|++|        ++.|+|+|.+|.+|+||||+|+.
T Consensus        12 ~~~~~~~~l~~~~~n~~~~~--------~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~   83 (277)
T d2fo1e1          12 GSYAITEPITRESVNIIDPR--------HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVL   83 (277)
T ss_dssp             SSSCCCSCCSTTTTTTCCCS--------SCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHH
T ss_pred             CCHHHHHHHHhcCCCcCCCC--------CCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccccc
Confidence            45666677777776653321        244699999999999887766        56799999999999999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCHHHHHHHHhCC
Q 022927          235 FNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDK  281 (290)
Q Consensus       235 ~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G  281 (290)
                      .|+.+++++|+++|++++.+|.+|.|||++|...++.+++.+++..+
T Consensus        84 ~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  130 (277)
T d2fo1e1          84 ARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNST  130 (277)
T ss_dssp             HTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSH
T ss_pred             cccccccccccccccccccccccccccccchhhhcchhhhhhhhhcc
Confidence            99999999999999999999999999999999999999999997764

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=6.6e-18  Score=139.54  Aligned_cols=98  Identities=18%  Similarity=0.098  Sum_probs=92.2

Q ss_pred             cchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCChhhhhhccCC
Q 022927          192 NGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESG-ANMDCKNAQGESPLDCAPVTLQ  270 (290)
Q Consensus       192 ~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~G-a~in~~d~~G~TpL~~A~~~g~  270 (290)
                      +.++|++++..++.+++++|++.|.+.+..|..|+||||+|+..|+.+++++|++.| .+++.+|.+|+||||+|+..|+
T Consensus       105 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~  184 (229)
T d1ixva_         105 GVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH  184 (229)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTC
T ss_pred             cccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhccccc
Confidence            467899999999999999999999999999999999999999999999999999996 7899999999999999999999


Q ss_pred             HHHHHHHHh-CCCCCCCCCC
Q 022927          271 YKMRQKMEE-DKNNVGSTTS  289 (290)
Q Consensus       271 ~~iv~~Ll~-~GAdin~~~~  289 (290)
                      .+++++|++ .|||++++|.
T Consensus       185 ~~~v~~Ll~~~gad~~~~d~  204 (229)
T d1ixva_         185 GDAAVLLVEKYGAEYDLVDN  204 (229)
T ss_dssp             HHHHHHHHHHHCCCSCCCCT
T ss_pred             HHHHHHHHHhcCCCCCCcCC
Confidence            999999996 5999999874

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=5.8e-18  Score=131.40  Aligned_cols=76  Identities=17%  Similarity=0.138  Sum_probs=65.9

Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHH
Q 022927          162 STSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIA  241 (290)
Q Consensus       162 s~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv  241 (290)
                      ......++.++..+.+.+..+..+.       ||||+|+..|+.+++++|++.|+++|.+|.+|.||||+|+..|+.+++
T Consensus        77 ~~~~~~~~~l~~~~~~~~~~~~~g~-------T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv  149 (153)
T d1awcb_          77 EGHANIVEVLLKHGADVNAKDMLKM-------TALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLA  149 (153)
T ss_dssp             HTCHHHHHHHHTTTCCTTCCCTTSC-------CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             cccceeeecccccCCccccccccCc-------hHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHH
Confidence            3344566777888888777665554       499999999999999999999999999999999999999999999999


Q ss_pred             HHH
Q 022927          242 FIL  244 (290)
Q Consensus       242 ~~L  244 (290)
                      ++|
T Consensus       150 ~lL  152 (153)
T d1awcb_         150 EIL  152 (153)
T ss_dssp             HHH
T ss_pred             HhC
Confidence            987

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.73  E-value=7e-18  Score=144.40  Aligned_cols=99  Identities=27%  Similarity=0.439  Sum_probs=94.5

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCC
Q 022927          191 VNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQ  270 (290)
Q Consensus       191 ~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~  270 (290)
                      .++|+||+|+..|+.++|++||++|+|+|.+|.+|+||||+|+..|+.+++++|+++|++.+..+..+.|||++|+..++
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~  118 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGY  118 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccc
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCC
Q 022927          271 YKMRQKMEEDKNNVGSTTS  289 (290)
Q Consensus       271 ~~iv~~Ll~~GAdin~~~~  289 (290)
                      .++++.|+++|+..+..|.
T Consensus       119 ~~~~~~l~~~~~~~~~~~~  137 (291)
T d1s70b_         119 LDIAEYLISQGAHVGAVNS  137 (291)
T ss_dssp             HHHHHHHHHTTCCTTCCCT
T ss_pred             cchhhcccccCcccccccc
Confidence            9999999999999887653

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.72  E-value=5.5e-20  Score=162.85  Aligned_cols=112  Identities=10%  Similarity=-0.015  Sum_probs=92.1

Q ss_pred             ccccccCCCCCCCCCCCCCCccccccchHHHHHHHcCCHHHHHHHHHCCCCCcccc--cCCCcHHHHHHHcCCHHHHHHH
Q 022927          167 NFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCD--KQGMSLLHLAALFNRTDIAFIL  244 (290)
Q Consensus       167 ~~~~Ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d--~~g~TpLh~A~~~g~~~iv~~L  244 (290)
                      .++.|++.|++++..+..+       .||||+|+..|+.++|++|++.|++++..+  ..|+||||+|+..|+.+++++|
T Consensus       108 ~~~~L~~~~~~in~~~~~g-------~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~L  180 (346)
T d2ajaa1         108 TLCLLLTSDEIVKVIQAEN-------YQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRL  180 (346)
T ss_dssp             HHTTC--CCSSCC--CHHH-------HHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHhCCCcccccCCCC-------CCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHH
Confidence            3566889999988876544       459999999999999999999999998876  3589999999999999999999


Q ss_pred             HHCCCCC---CCCCCCCCChhhhhhccCCHHHHHHHHhCCCCCC
Q 022927          245 MESGANM---DCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVG  285 (290)
Q Consensus       245 l~~Ga~i---n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAdin  285 (290)
                      ++.|++.   +..+..|.|||+.|+..|+.+++++|+++||+++
T Consensus       181 l~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~  224 (346)
T d2ajaa1         181 CELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA  224 (346)
T ss_dssp             HHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHH
T ss_pred             HHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcc
Confidence            9999765   3445667888889999999999999999998754

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.71  E-value=5.5e-19  Score=156.29  Aligned_cols=94  Identities=14%  Similarity=-0.001  Sum_probs=83.0

Q ss_pred             ccchHHHHHHHcCCHHHHHH---HHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC--CCCCChhhhh
Q 022927          191 VNGEGLRDAIKNGDAAAVKK---LLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN--AQGESPLDCA  265 (290)
Q Consensus       191 ~~~t~Lh~A~~~g~~~~v~~---Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d--~~G~TpL~~A  265 (290)
                      .|.|+||+|+..|+.+++++   |++.|+++|.+|..|+||||+|+..|+.+++++|+++|++++..+  .+|+||||+|
T Consensus        89 ~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A  168 (346)
T d2ajaa1          89 KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLA  168 (346)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHH
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHH
Confidence            46789999999999877665   789999999999999999999999999999999999999999876  4699999999


Q ss_pred             hccCCHHHHHHHHhCCCCC
Q 022927          266 PVTLQYKMRQKMEEDKNNV  284 (290)
Q Consensus       266 ~~~g~~~iv~~Ll~~GAdi  284 (290)
                      +..|+.++|++|+++|++.
T Consensus       169 a~~g~~~iv~~Ll~~~~~~  187 (346)
T d2ajaa1         169 AENGHLHVLNRLCELAPTE  187 (346)
T ss_dssp             HHTTCHHHHHHHHHSCGGG
T ss_pred             HHHhhHHHHHHHHHcCCcc
Confidence            9999999999999999864

>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Rififylin (FYVE-RING finger protein Sakura)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=7.3e-18  Score=105.04  Aligned_cols=48  Identities=19%  Similarity=0.349  Sum_probs=40.7

Q ss_pred             cccccCCCCCccccccccccccceecCCCCCCcccccCCCCCCcccccccchhhhc
Q 022927            7 QNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSS   62 (290)
Q Consensus         7 ~~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~   62 (290)
                      .|+.|+.+|++|+||||||.||++||.+|+.++        .++.|||+.||....
T Consensus         2 ~C~~C~~~F~~~~rkhhCr~CG~~fC~~Cs~~~--------~~~~RvC~~C~~~r~   49 (51)
T d1y02a2           2 SCKSCGAHFANTARKQTCLDCKKNFCMTCSSQV--------GNGPRLCLLCQRFRA   49 (51)
T ss_dssp             CCTTTCCCCSSGGGCEECTTTCCEECGGGEEC------------CCEEHHHHHHHH
T ss_pred             CccccCCcccCCccCcccccCCcccCccccCCC--------CCCCeECHhHhhHhh
Confidence            589999999999999999999999999998764        356799999998764

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2e-16  Score=128.31  Aligned_cols=84  Identities=26%  Similarity=0.270  Sum_probs=80.5

Q ss_pred             cchHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhhccCCH
Q 022927          192 NGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQY  271 (290)
Q Consensus       192 ~~t~Lh~A~~~g~~~~v~~Ll~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~~~g~~  271 (290)
                      +.++|++|+..+...+++.+++.|.+++.+|..|.||||+|+..|+.+++++|+++|+|++.+|.+|+||||+|++.|+.
T Consensus       144 ~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~  223 (228)
T d1k1aa_         144 GRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVI  223 (228)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHH
T ss_pred             hhhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCc
Confidence            34589999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH
Q 022927          272 KMRQ  275 (290)
Q Consensus       272 ~iv~  275 (290)
                      +||+
T Consensus       224 divk  227 (228)
T d1k1aa_         224 DILR  227 (228)
T ss_dssp             HHHT
T ss_pred             cccC
Confidence            9885

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=2.5e-15  Score=129.79  Aligned_cols=49  Identities=29%  Similarity=0.346  Sum_probs=47.5

Q ss_pred             CcccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCChhhhhh
Q 022927          218 ANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAP  266 (290)
Q Consensus       218 vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A~  266 (290)
                      +|.+|..|+||||+|+..|+.+++++||++||+++++|..|+|||++|+
T Consensus       252 in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            6888999999999999999999999999999999999999999999997

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.1e-14  Score=121.65  Aligned_cols=99  Identities=29%  Similarity=0.451  Sum_probs=88.9

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHHC-CCCCcccccCCCcHHHHHHHcC----CHHHHHHHHHCCCCCCCCCCCCCChhhhh
Q 022927          191 VNGEGLRDAIKNGDAAAVKKLLSE-GVDANFCDKQGMSLLHLAALFN----RTDIAFILMESGANMDCKNAQGESPLDCA  265 (290)
Q Consensus       191 ~~~t~Lh~A~~~g~~~~v~~Ll~~-g~~vn~~d~~g~TpLh~A~~~g----~~~iv~~Ll~~Ga~in~~d~~G~TpL~~A  265 (290)
                      .|.||||+|+..|+.+++++|++. |++++..+..|.++++.+...+    ...++++|+++|++++.+|..|.||||+|
T Consensus       147 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a  226 (285)
T d1wdya_         147 GGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILA  226 (285)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHH
T ss_pred             cCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchh
Confidence            466799999999999999999975 8999999999999888766543    35699999999999999999999999999


Q ss_pred             hccCCHHHHHHHHh-CCCCCCCCCC
Q 022927          266 PVTLQYKMRQKMEE-DKNNVGSTTS  289 (290)
Q Consensus       266 ~~~g~~~iv~~Ll~-~GAdin~~~~  289 (290)
                      +..|+.+++++||+ .|+++|.+|.
T Consensus       227 ~~~~~~~~v~~lL~~~g~din~~d~  251 (285)
T d1wdya_         227 VEKKHLGLVQRLLEQEHIEINDTDS  251 (285)
T ss_dssp             HHTTCHHHHHHHHHSSSCCTTCCCT
T ss_pred             hhcCcHHHHHHHHHcCCCCCcCCCC
Confidence            99999999999997 5999998864

>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Effector domain of rabphilin-3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.95  E-value=8e-11  Score=87.45  Aligned_cols=54  Identities=11%  Similarity=0.233  Sum_probs=43.8

Q ss_pred             cccccccCCCCCc-cccccccccccceecCCCCCCcccccCCCCCCcccccccchhhhc
Q 022927            5 DLQNLRLISHIRS-NLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSS   62 (290)
Q Consensus         5 ~~~~~~c~~~f~~-~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~   62 (290)
                      ...|+.|+++|++ ++|+||||.||.+||..|+....    .+...++|+|..|+....
T Consensus        48 ~~~C~~C~~~f~~~~~~~~~C~~C~~~~C~~C~~~~~----~~~~~~~w~C~~C~k~re  102 (124)
T d1zbdb_          48 VNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETS----NNRPHPVWLCKICLEQRE  102 (124)
T ss_dssp             SSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECC----CSSSSCCEEEHHHHHHHH
T ss_pred             CCcCcccCCcccCCCCCCCcCccCCcccccCCCCCcc----CCCCCCCEECccCcchHH
Confidence            3569999999995 68999999999999999975432    123578999999998763

>d1wfla_ g.80.1.1 (A:) Zinc finger A20 domain containing protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 domain containing protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.97  E-value=0.013  Score=37.45  Aligned_cols=26  Identities=23%  Similarity=0.537  Sum_probs=22.2

Q ss_pred             cccccCCCCCccccccccccccceecCCC
Q 022927            7 QNLRLISHIRSNLLQHHCRCCGRTLCHEH   35 (290)
Q Consensus         7 ~~~~c~~~f~~~~rrhhCr~cg~v~C~~c   35 (290)
                      -|..|+++..++.  ..|| ||.+||..+
T Consensus        27 RC~~C~KKl~l~~--~~Cr-Cg~~FC~~H   52 (74)
T d1wfla_          27 RCFMCRKKVGLTG--FDCR-CGNLFCGLH   52 (74)
T ss_dssp             BCSSSCCBCGGGC--EECT-TSCEECSSS
T ss_pred             cChhhCCccccee--eEcc-CCCEehhhc
Confidence            4888999999873  7897 999999876

>d1wfha_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At2g36320 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 and AN1 domains containing protein At2g36320
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.87  E-value=0.016  Score=35.88  Aligned_cols=27  Identities=26%  Similarity=0.527  Sum_probs=22.6

Q ss_pred             cccccCCCCCccccccccccccceecCCCC
Q 022927            7 QNLRLISHIRSNLLQHHCRCCGRTLCHEHS   36 (290)
Q Consensus         7 ~~~~c~~~f~~~~rrhhCr~cg~v~C~~c~   36 (290)
                      -|..|.++..++.  ..|| ||.+||..+-
T Consensus        17 RC~~C~KKl~l~~--~~Cr-Cg~~FC~~HR   43 (64)
T d1wfha_          17 RCTVCRKRVGLTG--FMCR-CGTTFCGSHR   43 (64)
T ss_dssp             CCTTTCCCCCTTC--EECS-SSCEECTTTC
T ss_pred             cChhhCCCcccee--eecc-CCCEehhhcC
Confidence            4788999999874  7898 9999998763

>d1wffa_ g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: ANUBL1 (AN1, ubiquitin-like, homolog)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.18  E-value=0.024  Score=37.24  Aligned_cols=27  Identities=22%  Similarity=0.533  Sum_probs=23.1

Q ss_pred             cccccCCCCCccccccccccccceecCCC
Q 022927            7 QNLRLISHIRSNLLQHHCRCCGRTLCHEH   35 (290)
Q Consensus         7 ~~~~c~~~f~~~~rrhhCr~cg~v~C~~c   35 (290)
                      -|..|.++-.++. .+.|| ||.+||..+
T Consensus        27 RC~~C~KKl~l~~-~~~Cr-Cg~~FC~~H   53 (85)
T d1wffa_          27 HCFLCGKKTGLAT-SFECR-CGNNFCASH   53 (85)
T ss_dssp             BCSSSCCBCSSSS-CEECT-TCCEECTTT
T ss_pred             cChhcCCeecCCc-CeecC-CCCEehhhc
Confidence            4889999999876 47898 999999876

>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: TFIIH p44 subunit cysteine-rich domain
domain: TFIIH p44 subunit cysteine-rich domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.05  E-value=0.0085  Score=36.38  Aligned_cols=29  Identities=10%  Similarity=0.272  Sum_probs=23.8

Q ss_pred             ccccccCCCCCccccccccccccceecCCC
Q 022927            6 LQNLRLISHIRSNLLQHHCRCCGRTLCHEH   35 (290)
Q Consensus         6 ~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c   35 (290)
                      ..|++|+.+|.-- -+..|..|+++||..|
T Consensus        16 ~~C~gC~~~l~~~-~~y~C~~C~~~FC~dC   44 (59)
T d1z60a1          16 RFCYGCQGELKDQ-HVYVCAVCQNVFCVDC   44 (59)
T ss_dssp             CEETTTTEECTTS-EEECCTTTTCCBCHHH
T ss_pred             CCccCCCCcCCCC-ceEECcCCCCcccccc
Confidence            4599999998632 3588999999999988

>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At1g12440 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 and AN1 domains containing protein At1g12440
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.61  E-value=0.047  Score=34.74  Aligned_cols=26  Identities=31%  Similarity=0.713  Sum_probs=21.3

Q ss_pred             cccccCCCCCccccccccccccceecCCC
Q 022927            7 QNLRLISHIRSNLLQHHCRCCGRTLCHEH   35 (290)
Q Consensus         7 ~~~~c~~~f~~~~rrhhCr~cg~v~C~~c   35 (290)
                      -|..|+++..++  .+-|| ||.+||..+
T Consensus        27 RC~~C~KKl~l~--~~~Cr-Cg~~FC~~H   52 (74)
T d1wfpa_          27 RCLSCNKKVGVT--GFKCR-CGSTFCGTH   52 (74)
T ss_dssp             BCSSSCCBCTTT--CEECT-TSCEECTTT
T ss_pred             cChhcCCccCCC--ceecC-CCChhhhcc
Confidence            378899999887  36675 999999876

>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: Zinc finger ZZ-type-containing protein 3, ZZZ3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.42  E-value=0.14  Score=32.26  Aligned_cols=37  Identities=16%  Similarity=0.274  Sum_probs=28.7

Q ss_pred             CCcccccccccCCCCCccccccccccc----cceecCCCCCC
Q 022927            1 MTHHDLQNLRLISHIRSNLLQHHCRCC----GRTLCHEHSSD   38 (290)
Q Consensus         1 ~~~~~~~~~~c~~~f~~~~rrhhCr~c----g~v~C~~c~~~   38 (290)
                      +.|...+|-+|+.. .+..+|+||..|    +.=+|..|-..
T Consensus        10 v~H~~~~Cd~C~~~-pi~G~R~~C~~Cp~~~d~DLC~~C~~~   50 (69)
T d2fc7a1          10 VQHVGFKCDNCGIE-PIQGVRWHCQDCPPEMSLDFCDSCSDC   50 (69)
T ss_dssp             CEESSCCCSSSCCS-SEESCEEEESSSCSSSCCEEEGGGTTC
T ss_pred             ceECCeEcCCCCCc-CcCCcccCCCCCCCCCCccchHHhhcC
Confidence            46788889999765 567789999999    56688888543

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=86.45  E-value=0.16  Score=31.73  Aligned_cols=50  Identities=10%  Similarity=0.089  Sum_probs=37.4

Q ss_pred             CCcccccccccCCCCCccccccccccccceecCCCCCCcccccCCCCCCcccccccchhhh
Q 022927            1 MTHHDLQNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSS   61 (290)
Q Consensus         1 ~~~~~~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~   61 (290)
                      |+-...+|-.|...|.-.   .-+..||.+||..|...+..        ..+-|..|-..+
T Consensus         1 ~~~~~d~C~IC~~~~~~~---~~~~~C~H~Fc~~Ci~~w~~--------~~~~CP~CR~~i   50 (68)
T d1chca_           1 MATVAERCPICLEDPSNY---SMALPCLHAFCYVCITRWIR--------QNPTCPLCKVPV   50 (68)
T ss_dssp             CCCCCCCCSSCCSCCCSC---EEETTTTEEESTTHHHHHHH--------HSCSTTTTCCCC
T ss_pred             CCCCCCCCccCCcCccCC---cEEeCCCCcCcHHHHHHHHH--------hCCcCCCCCcch
Confidence            667788899999888532   34678999999999877754        134688886655

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=81.67  E-value=0.21  Score=29.70  Aligned_cols=48  Identities=10%  Similarity=0.170  Sum_probs=33.6

Q ss_pred             cccccccCCCCCccccccccccccceecCCCCCCcccccCCCCCCcccccccchhh
Q 022927            5 DLQNLRLISHIRSNLLQHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNS   60 (290)
Q Consensus         5 ~~~~~~c~~~f~~~~rrhhCr~cg~v~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~   60 (290)
                      ..+|..|...|.--..---...||.+||..|-..+..        ....|..|-..
T Consensus         5 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~--------~~~~CP~CR~~   52 (55)
T d1iyma_           5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG--------SHSTCPLCRLT   52 (55)
T ss_dssp             SCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTT--------TCCSCSSSCCC
T ss_pred             CCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHH--------hCCcCCCCCCE
Confidence            4578999999975444333567999999999888753        12357777554