Citrus Sinensis ID: 022946
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 289 | 2.2.26 [Sep-21-2011] | |||||||
| P54967 | 378 | Biotin synthase OS=Arabid | yes | no | 0.965 | 0.738 | 0.816 | 1e-134 | |
| O59778 | 363 | Biotin synthase OS=Schizo | yes | no | 0.806 | 0.641 | 0.639 | 2e-92 | |
| Q11S94 | 337 | Biotin synthase OS=Cytoph | yes | no | 0.806 | 0.691 | 0.636 | 3e-88 | |
| Q8YVQ3 | 335 | Biotin synthase OS=Nostoc | yes | no | 0.806 | 0.695 | 0.585 | 1e-82 | |
| Q3M4U9 | 335 | Biotin synthase OS=Anabae | yes | no | 0.806 | 0.695 | 0.585 | 3e-82 | |
| B2J914 | 335 | Biotin synthase OS=Nostoc | yes | no | 0.813 | 0.701 | 0.584 | 8e-82 | |
| P32451 | 375 | Biotin synthase, mitochon | yes | no | 0.882 | 0.68 | 0.531 | 2e-81 | |
| Q2NB65 | 341 | Biotin synthase OS=Erythr | yes | no | 0.799 | 0.677 | 0.587 | 2e-79 | |
| A5FLT1 | 363 | Biotin synthase OS=Flavob | yes | no | 0.809 | 0.644 | 0.557 | 5e-79 | |
| Q6FAP9 | 329 | Biotin synthase OS=Acinet | yes | no | 0.799 | 0.702 | 0.557 | 2e-78 |
| >sp|P54967|BIOB_ARATH Biotin synthase OS=Arabidopsis thaliana GN=BIO2 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 476 bits (1226), Expect = e-134, Method: Compositional matrix adjust.
Identities = 232/284 (81%), Positives = 256/284 (90%), Gaps = 5/284 (1%)
Query: 1 MMSFRSLLRSQRSLSLRPSKKFLALHSSCSCYSASAAAIEAERTIREGPRHDWSKDDIKS 60
MM RS+ RSQ LRPS L S+ S SAA+ EAERTIREGPR+DWS+D+IKS
Sbjct: 1 MMLVRSVFRSQ----LRPSVSG-GLQSASCYSSLSAASAEAERTIREGPRNDWSRDEIKS 55
Query: 61 IYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQK 120
+YDSP+LDLLFHGAQVHRH HNFREVQQCTLLSIKTGGCSEDCSYCPQSSRY TGVK Q+
Sbjct: 56 VYDSPLLDLLFHGAQVHRHVHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYSTGVKAQR 115
Query: 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG 180
LM+KDAV+ AA+KAKEAGSTRFCMGAAWRDTIGRKTNF+QILEY+K+IR MGMEVCCTLG
Sbjct: 116 LMSKDAVIDAAKKAKEAGSTRFCMGAAWRDTIGRKTNFSQILEYIKEIRGMGMEVCCTLG 175
Query: 181 MLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGI 240
M+EK QA+ELKKAGLTAYNHNLDTSRE+Y +ITTRSYD+RLETL HVR+AGINVCSGGI
Sbjct: 176 MIEKQQALELKKAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLSHVRDAGINVCSGGI 235
Query: 241 IGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284
IGLGEAEEDR+GLLHTLATLP+HPESVPINALLAVKGTPL+DQK
Sbjct: 236 IGLGEAEEDRIGLLHTLATLPSHPESVPINALLAVKGTPLEDQK 279
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Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 8EC: .EC: 1EC: .EC: 6 |
| >sp|O59778|BIOB_SCHPO Biotin synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bio2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 338 bits (868), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 149/233 (63%), Positives = 190/233 (81%)
Query: 50 RHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQS 109
R++W++++I+ IYD+P++DL+F A +HR H+ ++VQQCTLLSIKTGGC+EDC YC QS
Sbjct: 20 RNNWTREEIQKIYDTPLIDLIFRAASIHRKFHDPKKVQQCTLLSIKTGGCTEDCKYCAQS 79
Query: 110 SRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169
SRY+TGVK KLM D V++ A+ AK GSTRFCMG+AWRD GR F ILE +K++R
Sbjct: 80 SRYNTGVKATKLMKIDEVLEKAKIAKAKGSTRFCMGSAWRDLNGRNRTFKNILEIIKEVR 139
Query: 170 DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVR 229
M MEVC TLGML + QA ELK AGLTAYNHNLDTSRE+YSKII+TR+YDERL T+ ++R
Sbjct: 140 SMDMEVCVTLGMLNEQQAKELKDAGLTAYNHNLDTSREYYSKIISTRTYDERLNTIDNLR 199
Query: 230 EAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282
+AG+ VCSGGI+GLGE + DRVGL+H+LAT+PTHPESVP N L+ + GTP+ D
Sbjct: 200 KAGLKVCSGGILGLGEKKHDRVGLIHSLATMPTHPESVPFNLLVPIPGTPVGD 252
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Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 6 |
| >sp|Q11S94|BIOB_CYTH3 Biotin synthase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=bioB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 325 bits (833), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 149/234 (63%), Positives = 190/234 (81%), Gaps = 1/234 (0%)
Query: 50 RHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQS 109
R++W+K++I +IY+SP+LDL++ GA VHR H+ +EVQ CTLLSIKTGGC EDCSYCPQ+
Sbjct: 5 RNNWTKEEISAIYNSPILDLMYRGATVHREFHDPQEVQVCTLLSIKTGGCPEDCSYCPQA 64
Query: 110 SRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169
+RY T VK +KLM V+ +A +AKE+GSTRFCMGAAWR+ K +F+++++ VK +
Sbjct: 65 ARYHTDVKVEKLMDVKDVLNSALEAKESGSTRFCMGAAWREVRDNK-DFDKVIDMVKGVS 123
Query: 170 DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVR 229
MGMEVCCTLGML QA +LK AGL AYNHNLDTS E Y K+ITTR+YD+RLETL +VR
Sbjct: 124 TMGMEVCCTLGMLTPEQADKLKDAGLYAYNHNLDTSAEHYDKVITTRTYDDRLETLDNVR 183
Query: 230 EAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ 283
A I+VCSGGIIG+GE+ DRVG+LHTLA + HPESVP+NAL+ V+GTPL+DQ
Sbjct: 184 NAKISVCSGGIIGMGESHGDRVGMLHTLANMVEHPESVPVNALVPVEGTPLEDQ 237
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Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism. Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) (taxid: 269798) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 6 |
| >sp|Q8YVQ3|BIOB_NOSS1 Biotin synthase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=bioB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 306 bits (783), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 137/234 (58%), Positives = 181/234 (77%), Gaps = 1/234 (0%)
Query: 50 RHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQS 109
R+DW K +I+++YD+P+L+L++ A VHR HN +++Q C L+SIKTG C EDCSYC QS
Sbjct: 7 RYDWHKAEIRAVYDTPLLELIYQAASVHRQFHNPKQIQVCKLISIKTGACPEDCSYCAQS 66
Query: 110 SRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169
SRY T VK Q L+ K V++ AQ AK+ G +R CMGAAWR+ + + F+++LE VKD+
Sbjct: 67 SRYQTEVKPQALLDKQTVVEIAQNAKQKGVSRVCMGAAWRE-VRDNSQFDRVLEMVKDVT 125
Query: 170 DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVR 229
DMG+EVCCTLGML QA +L+ AGL AYNHNLDTS ++YS IITTR+Y +RL T+++VR
Sbjct: 126 DMGLEVCCTLGMLTSEQAKKLETAGLYAYNHNLDTSSDYYSTIITTRTYGDRLNTIENVR 185
Query: 230 EAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ 283
+ + VCSGGI+GLGE+ +DRV +L TLATL HPESVPIN L V+GTPL+DQ
Sbjct: 186 QTNVTVCSGGILGLGESIDDRVAMLQTLATLNPHPESVPINILSQVEGTPLEDQ 239
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Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism. Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 6 |
| >sp|Q3M4U9|BIOB_ANAVT Biotin synthase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=bioB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 305 bits (780), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 137/234 (58%), Positives = 180/234 (76%), Gaps = 1/234 (0%)
Query: 50 RHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQS 109
R+DW +I+++YD P+L+L++ A VHR HN +++Q C L+SIKTGGC EDCSYC QS
Sbjct: 7 RYDWHTAEIRAVYDMPLLELIYQAASVHRQFHNPKQIQVCKLISIKTGGCPEDCSYCAQS 66
Query: 110 SRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169
SRY T VK Q L+ K V++ AQ AK+ G +R CMGAAWR+ + + F+++LE VKD+
Sbjct: 67 SRYQTEVKPQALLDKQTVVEIAQNAKQKGVSRVCMGAAWRE-VRDNSQFDRVLEMVKDVT 125
Query: 170 DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVR 229
DMG+EVCCTLGML QA +L+ AGL AYNHNLDTS ++YS IITTR+Y +RL T+++VR
Sbjct: 126 DMGLEVCCTLGMLTTDQAKKLETAGLYAYNHNLDTSSDYYSTIITTRTYSDRLNTIENVR 185
Query: 230 EAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ 283
+ + VCSGGI+GLGE+ +DRV +L TLATL HPESVPIN L V+GTPL+DQ
Sbjct: 186 QTNVTVCSGGILGLGESIDDRVAMLQTLATLNPHPESVPINILSQVEGTPLEDQ 239
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Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism. Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 6 |
| >sp|B2J914|BIOB_NOSP7 Biotin synthase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=bioB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 303 bits (777), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 138/236 (58%), Positives = 182/236 (77%), Gaps = 1/236 (0%)
Query: 48 GPRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCP 107
G R+DW + +I++IY++P+L+L++ A VHR H+ ++Q C L+SIKTGGC EDCSYC
Sbjct: 3 GIRYDWQELEIRAIYNTPLLELIYQAASVHRQYHDPTKIQVCKLISIKTGGCPEDCSYCA 62
Query: 108 QSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKD 167
QSSRY T VK + L+ K+ V+ AQKAKE G +R CMGAAWR+ + + F ++LE VKD
Sbjct: 63 QSSRYKTEVKAEALLEKETVVNIAQKAKETGVSRICMGAAWRE-VRDNSQFEEVLEMVKD 121
Query: 168 IRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKH 227
I MG+EVCCTLGML +QA +L++AGL AYNHNLDTS+E+YS IITTR+Y +RL T+++
Sbjct: 122 ITAMGLEVCCTLGMLTANQARKLEEAGLYAYNHNLDTSQEYYSTIITTRTYSDRLNTIEN 181
Query: 228 VREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ 283
VR+ + VCSGGI+GLGE +DRVG+L TLA L HPESVPIN L V GTPL++Q
Sbjct: 182 VRQTNVTVCSGGILGLGETVDDRVGMLQTLANLHPHPESVPINILSQVPGTPLENQ 237
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Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism. Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (taxid: 63737) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 6 |
| >sp|P32451|BIOB_YEAST Biotin synthase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BIO2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 302 bits (773), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 137/258 (53%), Positives = 198/258 (76%), Gaps = 3/258 (1%)
Query: 27 SSCSCYSASAAAIEAERTIREGPRHDWSKDDIKSIYDSPVLDLLFHGAQV-HRHAHNFRE 85
++ S +++ A++ ++ E P H W+K +K IY +P+L+L H AQ+ HR H+ +
Sbjct: 28 TTASSEASTLGALQYALSLDE-PSHSWTKSQLKEIYHTPLLELT-HAAQLQHRKWHDPTK 85
Query: 86 VQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMG 145
VQ CTL++IK+GGCSEDC YC QSSR DTG+K +K++ D V++ A++AK GSTRFC+G
Sbjct: 86 VQLCTLMNIKSGGCSEDCKYCAQSSRNDTGLKAEKMVKVDEVIKEAEEAKRNGSTRFCLG 145
Query: 146 AAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 205
AAWRD GRK+ +I E V + DMG+E C TLGM+++ QA +LK AGLTAYNHN+DTS
Sbjct: 146 AAWRDMKGRKSAMKRIQEMVTKVNDMGLETCVTLGMVDQDQAKQLKDAGLTAYNHNIDTS 205
Query: 206 REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPE 265
RE YSK+ITTR+YD+RL+T+K+V+E+GI C+GGI+GLGE+E+D +G ++TL+ + HPE
Sbjct: 206 REHYSKVITTRTYDDRLQTIKNVQESGIKACTGGILGLGESEDDHIGFIYTLSNMSPHPE 265
Query: 266 SVPINALLAVKGTPLQDQ 283
S+PIN L+A+KGTP+ ++
Sbjct: 266 SLPINRLVAIKGTPMAEE 283
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Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 6 |
| >sp|Q2NB65|BIOB_ERYLH Biotin synthase OS=Erythrobacter litoralis (strain HTCC2594) GN=bioB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 295 bits (755), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 137/233 (58%), Positives = 174/233 (74%), Gaps = 2/233 (0%)
Query: 50 RHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQS 109
R +WS+D+I ++++ P +LLF A VHR H +VQ CTLLSIKTGGC EDC YC QS
Sbjct: 5 RTNWSRDEIAALFEQPFTELLFQAATVHRAYHPPEQVQLCTLLSIKTGGCPEDCGYCSQS 64
Query: 110 SRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169
+ D+GV+ KLM V+Q+A +AK+AGS RFCMGAAWR+ R + I+E VK +R
Sbjct: 65 VKADSGVEATKLMDVQRVLQSAAQAKDAGSQRFCMGAAWRNPKDR--DMPAIVEIVKGVR 122
Query: 170 DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVR 229
DMG+E C TLGML QA LK AGL YNHN+DT E+Y ++I+TR+Y +RL+TL++VR
Sbjct: 123 DMGLETCMTLGMLTPKQADMLKDAGLDYYNHNVDTGPEYYERVISTRNYQDRLDTLQNVR 182
Query: 230 EAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282
+AGINVCSGGI+G+GE EDRVG +HTLATL HPESVP+NAL+ VKGT L D
Sbjct: 183 DAGINVCSGGIVGMGETREDRVGFVHTLATLERHPESVPVNALVPVKGTVLGD 235
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Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism. Erythrobacter litoralis (strain HTCC2594) (taxid: 314225) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 6 |
| >sp|A5FLT1|BIOB_FLAJ1 Biotin synthase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=bioB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 294 bits (752), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 131/235 (55%), Positives = 179/235 (76%), Gaps = 1/235 (0%)
Query: 50 RHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQS 109
+H+W+KD+I +IY+ P++DLL+ A +HR H+ VQ TLLSIKTGGC EDC YCPQ+
Sbjct: 6 KHNWTKDEIIAIYNKPLMDLLYEAATIHRQQHDPNVVQVSTLLSIKTGGCPEDCGYCPQA 65
Query: 110 SRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169
+RY+TGV+G LMT V A +AK GS+R CMGAAWR+ + F+Q+LE V+ I
Sbjct: 66 ARYNTGVEGNDLMTVSQVKAQALRAKSNGSSRVCMGAAWRN-VKDGEEFDQVLEMVRTIN 124
Query: 170 DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVR 229
+ MEVCCTLGML ++QA L +AGL AYNHNLDTS E+Y +I+TR +++RL+T+++VR
Sbjct: 125 KLDMEVCCTLGMLTENQAQRLAEAGLYAYNHNLDTSEEYYKDVISTRGFEDRLQTIENVR 184
Query: 230 EAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284
+ + VCSGGIIG+GE+ EDR G+L L+TL PESVPINAL+AV+GTP++++K
Sbjct: 185 KTNVTVCSGGIIGMGESIEDRAGMLVALSTLNPQPESVPINALVAVEGTPMEEEK 239
|
Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism. Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) (taxid: 376686) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 6 |
| >sp|Q6FAP9|BIOB_ACIAD Biotin synthase OS=Acinetobacter sp. (strain ADP1) GN=bioB PE=3 SV=2 | Back alignment and function description |
|---|
Score = 292 bits (748), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 130/233 (55%), Positives = 175/233 (75%), Gaps = 2/233 (0%)
Query: 50 RHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQS 109
R+DW++D+I+++YD P LDL+F QVHR + +Q TLLSIKTG C EDC YC QS
Sbjct: 4 RNDWTRDEIQALYDQPFLDLVFQAQQVHREHFSANTIQVSTLLSIKTGKCPEDCKYCSQS 63
Query: 110 SRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169
+ YD+ ++ +K + D V+ A+ AK++GS+RFCMGAAWR+ R + +LE V++++
Sbjct: 64 AHYDSKLEAEKRIAVDKVISEAKAAKDSGSSRFCMGAAWRNPHERDMPY--VLEMVREVK 121
Query: 170 DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVR 229
+G+E C TLGML + QA L AGL YNHNLDTSRE+Y+ II+TR++D+RL TL HVR
Sbjct: 122 ALGLETCMTLGMLNQSQAERLSDAGLDYYNHNLDTSREYYNNIISTRTFDDRLNTLDHVR 181
Query: 230 EAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282
AG+ VCSGGI+GLGE ++DR+GLLH LATLP HPESVPIN L+ ++GTPL D
Sbjct: 182 SAGMKVCSGGIVGLGEQKQDRIGLLHELATLPIHPESVPINMLVPIEGTPLAD 234
|
Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism. Acinetobacter sp. (strain ADP1) (taxid: 62977) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 289 | ||||||
| 255577757 | 375 | biotin synthase, putative [Ricinus commu | 0.944 | 0.728 | 0.806 | 1e-135 | |
| 255637113 | 374 | unknown [Glycine max] | 0.937 | 0.724 | 0.857 | 1e-135 | |
| 297828031 | 377 | hypothetical protein ARALYDRAFT_903720 [ | 0.961 | 0.737 | 0.834 | 1e-134 | |
| 356538487 | 374 | PREDICTED: biotin synthase-like [Glycine | 0.903 | 0.697 | 0.877 | 1e-134 | |
| 357474135 | 377 | Biotin synthase [Medicago truncatula] gi | 0.958 | 0.734 | 0.796 | 1e-134 | |
| 225433839 | 381 | PREDICTED: biotin synthase [Vitis vinife | 0.958 | 0.727 | 0.856 | 1e-133 | |
| 15224273 | 378 | biotin synthase [Arabidopsis thaliana] g | 0.965 | 0.738 | 0.816 | 1e-132 | |
| 388519677 | 377 | unknown [Medicago truncatula] | 0.958 | 0.734 | 0.789 | 1e-132 | |
| 224132680 | 391 | predicted protein [Populus trichocarpa] | 0.851 | 0.629 | 0.873 | 1e-132 | |
| 28392925 | 378 | putative biotin synthase (Bio B) [Arabid | 0.965 | 0.738 | 0.813 | 1e-131 |
| >gi|255577757|ref|XP_002529753.1| biotin synthase, putative [Ricinus communis] gi|223530751|gb|EEF32619.1| biotin synthase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 229/284 (80%), Positives = 255/284 (89%), Gaps = 11/284 (3%)
Query: 1 MMSFRSLLRSQRSLSLRPSKKFLALHSSCSCYSASAAAIEAERTIREGPRHDWSKDDIKS 60
M S RS+ R Q+ LRPS F YS+SAAAI+AERTI+EGPR+DW++ +IK+
Sbjct: 1 MFSVRSIFRPQQ---LRPSFVF--------SYSSSAAAIQAERTIKEGPRNDWTRQEIKN 49
Query: 61 IYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQK 120
+YDSP+LDLLFHGAQVHRH NFREVQQCTLLSIKTGGCSEDCSYCPQSSRY+TG+K QK
Sbjct: 50 VYDSPLLDLLFHGAQVHRHFQNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYNTGLKAQK 109
Query: 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG 180
LMTKD V+QAA++AKEAGSTRFCMGAAWRDTIGRKTNFNQIL+YVK+IRDMGMEVCCTLG
Sbjct: 110 LMTKDDVLQAAKRAKEAGSTRFCMGAAWRDTIGRKTNFNQILDYVKEIRDMGMEVCCTLG 169
Query: 181 MLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGI 240
MLEK QA ELKKAGLTAYNHNLDTSRE+Y II+TRSYDERL+TL+HVRE GINVCSGGI
Sbjct: 170 MLEKQQAAELKKAGLTAYNHNLDTSREYYPNIISTRSYDERLKTLEHVREVGINVCSGGI 229
Query: 241 IGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284
IGLGEAEEDRVGLLHTL+TLP HPESVPINAL+AVKGTPL+DQK
Sbjct: 230 IGLGEAEEDRVGLLHTLSTLPMHPESVPINALIAVKGTPLEDQK 273
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255637113|gb|ACU18888.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 234/273 (85%), Positives = 257/273 (94%), Gaps = 2/273 (0%)
Query: 12 RSLSLRPSKKFLALHSSCSCYSASAAAIEAERTIREGPRHDWSKDDIKSIYDSPVLDLLF 71
R + RPS ALHSS + SASAAAI+AERTI+EGPR+DWS+D +KSIYDSP+LDLLF
Sbjct: 5 RPIFRRPS--LWALHSSYAYSSASAAAIQAERTIKEGPRNDWSRDQVKSIYDSPILDLLF 62
Query: 72 HGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAA 131
HGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSS+YDTGVKGQ+LM K+AV+QAA
Sbjct: 63 HGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSKYDTGVKGQRLMNKEAVLQAA 122
Query: 132 QKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELK 191
+KAKEAGSTRFCMGAAWRDT+GRKTNFNQILEYVKDIRDMGMEVCCTLGMLEK QA+ELK
Sbjct: 123 KKAKEAGSTRFCMGAAWRDTLGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKQQAVELK 182
Query: 192 KAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRV 251
KAGLTAYNHNLDTSRE+Y IITTR+YDERL+TL+ VR+AGINVCSGGIIGLGEAEEDRV
Sbjct: 183 KAGLTAYNHNLDTSREYYPNIITTRTYDERLQTLEFVRDAGINVCSGGIIGLGEAEEDRV 242
Query: 252 GLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284
GLLHTL+TLPTHPESVPINAL+AVKGTPL+DQK
Sbjct: 243 GLLHTLSTLPTHPESVPINALVAVKGTPLEDQK 275
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297828031|ref|XP_002881898.1| hypothetical protein ARALYDRAFT_903720 [Arabidopsis lyrata subsp. lyrata] gi|297327737|gb|EFH58157.1| hypothetical protein ARALYDRAFT_903720 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 237/284 (83%), Positives = 258/284 (90%), Gaps = 6/284 (2%)
Query: 1 MMSFRSLLRSQRSLSLRPSKKFLALHSSCSCYSASAAAIEAERTIREGPRHDWSKDDIKS 60
MM RS+ RS+ +RPS S SCYS+SAA+ EAERTIREGPR+DWSKD+IKS
Sbjct: 1 MMLVRSVFRSR----IRPSVS--GGLQSVSCYSSSAASAEAERTIREGPRNDWSKDEIKS 54
Query: 61 IYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQK 120
+YDSPVLDLLFHGAQVHRH HNFREVQQCTLLSIKTGGCSEDCSYCPQSSRY TGVK Q+
Sbjct: 55 VYDSPVLDLLFHGAQVHRHVHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYSTGVKAQR 114
Query: 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG 180
LM+KDAV+ AA+KAKEAGSTRFCMGAAWRDTIGRKTNFNQILEY+K+IR MGMEVCCTLG
Sbjct: 115 LMSKDAVIDAAKKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYIKEIRGMGMEVCCTLG 174
Query: 181 MLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGI 240
M+EK QA+ELKKAGLTAYNHNLDTSRE+Y +ITTRSYD+RLETL+HVREAGINVCSGGI
Sbjct: 175 MIEKQQALELKKAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLEHVREAGINVCSGGI 234
Query: 241 IGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284
IGLGEAEEDRVGLLHTLATLP HPESVPINALLAVKGTPL+DQK
Sbjct: 235 IGLGEAEEDRVGLLHTLATLPMHPESVPINALLAVKGTPLEDQK 278
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356538487|ref|XP_003537735.1| PREDICTED: biotin synthase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust.
Identities = 229/261 (87%), Positives = 251/261 (96%)
Query: 24 ALHSSCSCYSASAAAIEAERTIREGPRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNF 83
ALHSS + SASAAAI+AER I+EGPR+DWS+D +KSIYDSP+LDLLFHGAQVHRHAHNF
Sbjct: 15 ALHSSYAYSSASAAAIQAERAIKEGPRNDWSRDQVKSIYDSPILDLLFHGAQVHRHAHNF 74
Query: 84 REVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFC 143
REVQQCTLLSIKTGGCSEDCSYCPQSS+YDTGVKGQ+LM K+AV+QAA+KAKEAGSTRFC
Sbjct: 75 REVQQCTLLSIKTGGCSEDCSYCPQSSKYDTGVKGQRLMNKEAVLQAAKKAKEAGSTRFC 134
Query: 144 MGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLD 203
MGAAWRDT+GRKTNFNQILEYVKDIRDMGMEVCCTLGMLEK QA+ELKKAGLTAYNHNLD
Sbjct: 135 MGAAWRDTLGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKQQAVELKKAGLTAYNHNLD 194
Query: 204 TSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTH 263
TSRE+Y IITTR+YDERL+TL+ VR+AGINVCSGGIIGLGEAEEDRVGLLHTL+TLPTH
Sbjct: 195 TSREYYPNIITTRTYDERLQTLEFVRDAGINVCSGGIIGLGEAEEDRVGLLHTLSTLPTH 254
Query: 264 PESVPINALLAVKGTPLQDQK 284
PESVPINAL+AVKGTPL+DQK
Sbjct: 255 PESVPINALVAVKGTPLEDQK 275
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357474135|ref|XP_003607352.1| Biotin synthase [Medicago truncatula] gi|355508407|gb|AES89549.1| Biotin synthase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust.
Identities = 227/285 (79%), Positives = 257/285 (90%), Gaps = 8/285 (2%)
Query: 1 MMSFRSLLRSQRSLSLRPSKKFLALHSSCSCYS-ASAAAIEAERTIREGPRHDWSKDDIK 59
M R +LRSQ S+ + + C+ +S +SAAAI+AE+TI+ GPR+DW+KD++K
Sbjct: 1 MFWLRPILRSQ-------SRSSIWVLQHCNSFSTSSAAAIQAEKTIQNGPRNDWTKDEVK 53
Query: 60 SIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQ 119
SIYDSP+LDLLFHGAQVHRHAHNFREVQQCTLLS+KTGGCSEDCSYCPQSSRYDTG+KGQ
Sbjct: 54 SIYDSPILDLLFHGAQVHRHAHNFREVQQCTLLSVKTGGCSEDCSYCPQSSRYDTGLKGQ 113
Query: 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTL 179
KL+ KDAV+QAA KAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVK+I+ MGMEVCCTL
Sbjct: 114 KLLNKDAVLQAAVKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKEIKGMGMEVCCTL 173
Query: 180 GMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGG 239
GML+K QA ELKKAGLTAYNHNLDTSRE+Y IITTR+YDERL+TL+ VR+AGINVCSGG
Sbjct: 174 GMLDKDQAGELKKAGLTAYNHNLDTSREYYPNIITTRTYDERLKTLEFVRDAGINVCSGG 233
Query: 240 IIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284
IIGLGEAE+DRVGLLHTL+TLPTHPESVPINAL+AVKGTPLQDQK
Sbjct: 234 IIGLGEAEDDRVGLLHTLSTLPTHPESVPINALIAVKGTPLQDQK 278
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225433839|ref|XP_002263125.1| PREDICTED: biotin synthase [Vitis vinifera] gi|297743757|emb|CBI36640.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust.
Identities = 238/278 (85%), Positives = 256/278 (92%), Gaps = 1/278 (0%)
Query: 7 LLRSQRSLSLRPSKKFLALHSSCSCYSASAAAIEAERTIREGPRHDWSKDDIKSIYDSPV 66
+LR R+ LRPS L SS S YS+SAAA+EAER IR+GPR+DW++ +IKSIYDSP+
Sbjct: 3 VLRFTRAY-LRPSIILLQSSSSFSSYSSSAAAVEAERAIRDGPRNDWTRPEIKSIYDSPL 61
Query: 67 LDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDA 126
LDLLFHGAQVHRHAHNFREVQQCTLLS+KTGGCSEDCSYCPQSSRY TGVK Q+LM KDA
Sbjct: 62 LDLLFHGAQVHRHAHNFREVQQCTLLSVKTGGCSEDCSYCPQSSRYSTGVKAQRLMNKDA 121
Query: 127 VMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQ 186
V+QAAQKAKEAGSTRFCMGAAWRDT+GRKTNFNQILEYVK+IRDMGMEVCCTLGMLEK Q
Sbjct: 122 VLQAAQKAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRDMGMEVCCTLGMLEKQQ 181
Query: 187 AIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEA 246
AIELKKAGLTAYNHNLDTSRE+Y II TRSYDERLETL+ VREAGINVCSGGIIGLGEA
Sbjct: 182 AIELKKAGLTAYNHNLDTSREYYPNIIRTRSYDERLETLQLVREAGINVCSGGIIGLGEA 241
Query: 247 EEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284
EEDRVGLLHTLATLPTHPESVPINALLAVKGTPL+DQK
Sbjct: 242 EEDRVGLLHTLATLPTHPESVPINALLAVKGTPLEDQK 279
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15224273|ref|NP_181864.1| biotin synthase [Arabidopsis thaliana] gi|1705463|sp|P54967.1|BIOB_ARATH RecName: Full=Biotin synthase gi|1045316|gb|AAA80226.1| biotin sythase [Arabidopsis thaliana] gi|1403662|gb|AAC49445.1| BIO2 protein [Arabidopsis thaliana] gi|1769457|gb|AAB39953.1| biotin synthase [Arabidopsis thaliana] gi|2288983|gb|AAB64312.1| biotin synthase (Bio B) [Arabidopsis thaliana] gi|90093314|gb|ABD85170.1| At2g43360 [Arabidopsis thaliana] gi|330255162|gb|AEC10256.1| biotin synthase [Arabidopsis thaliana] gi|1589016|prf||2209438A biotin synthase | Back alignment and taxonomy information |
|---|
Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust.
Identities = 232/284 (81%), Positives = 256/284 (90%), Gaps = 5/284 (1%)
Query: 1 MMSFRSLLRSQRSLSLRPSKKFLALHSSCSCYSASAAAIEAERTIREGPRHDWSKDDIKS 60
MM RS+ RSQ LRPS L S+ S SAA+ EAERTIREGPR+DWS+D+IKS
Sbjct: 1 MMLVRSVFRSQ----LRPSVSG-GLQSASCYSSLSAASAEAERTIREGPRNDWSRDEIKS 55
Query: 61 IYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQK 120
+YDSP+LDLLFHGAQVHRH HNFREVQQCTLLSIKTGGCSEDCSYCPQSSRY TGVK Q+
Sbjct: 56 VYDSPLLDLLFHGAQVHRHVHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYSTGVKAQR 115
Query: 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG 180
LM+KDAV+ AA+KAKEAGSTRFCMGAAWRDTIGRKTNF+QILEY+K+IR MGMEVCCTLG
Sbjct: 116 LMSKDAVIDAAKKAKEAGSTRFCMGAAWRDTIGRKTNFSQILEYIKEIRGMGMEVCCTLG 175
Query: 181 MLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGI 240
M+EK QA+ELKKAGLTAYNHNLDTSRE+Y +ITTRSYD+RLETL HVR+AGINVCSGGI
Sbjct: 176 MIEKQQALELKKAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLSHVRDAGINVCSGGI 235
Query: 241 IGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284
IGLGEAEEDR+GLLHTLATLP+HPESVPINALLAVKGTPL+DQK
Sbjct: 236 IGLGEAEEDRIGLLHTLATLPSHPESVPINALLAVKGTPLEDQK 279
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388519677|gb|AFK47900.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust.
Identities = 225/285 (78%), Positives = 255/285 (89%), Gaps = 8/285 (2%)
Query: 1 MMSFRSLLRSQRSLSLRPSKKFLALHSSCSCYS-ASAAAIEAERTIREGPRHDWSKDDIK 59
M +LRSQ S+ + + C+ +S +SAAAI+AE+TI+ GPR+DW+KD++K
Sbjct: 1 MFWLGPILRSQ-------SRSSIWVLQHCNSFSTSSAAAIQAEKTIQNGPRNDWTKDEVK 53
Query: 60 SIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQ 119
SIYDSP+LDLLFHGAQVHRHAHNFREVQQCTLLS+KTGGCSEDCSYCPQSSRYDTG+KGQ
Sbjct: 54 SIYDSPILDLLFHGAQVHRHAHNFREVQQCTLLSVKTGGCSEDCSYCPQSSRYDTGLKGQ 113
Query: 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTL 179
KL+ KDAV+QAA KAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVK+I+ MGMEVCCT
Sbjct: 114 KLLNKDAVLQAAVKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKEIKGMGMEVCCTH 173
Query: 180 GMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGG 239
GML+K QA ELKKAGLTAYNHNLDTSRE+Y IITTR+YDERL+TL+ VR+AGINVCSGG
Sbjct: 174 GMLDKDQAGELKKAGLTAYNHNLDTSREYYPNIITTRTYDERLKTLEFVRDAGINVCSGG 233
Query: 240 IIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284
IIGLGEAE+DRVGLLHTL+TLPTHPESVPINAL+AVKGTPLQDQK
Sbjct: 234 IIGLGEAEDDRVGLLHTLSTLPTHPESVPINALIAVKGTPLQDQK 278
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224132680|ref|XP_002327854.1| predicted protein [Populus trichocarpa] gi|222837263|gb|EEE75642.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 476 bits (1224), Expect = e-132, Method: Compositional matrix adjust.
Identities = 215/246 (87%), Positives = 240/246 (97%)
Query: 40 EAERTIREGPRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGC 99
+AE+TI++GPR+DW++++IK +YDSP+LDLLFHGAQVHR+AHNFREVQQCTLLSIKTGGC
Sbjct: 33 QAEKTIKDGPRNDWTREEIKDVYDSPLLDLLFHGAQVHRYAHNFREVQQCTLLSIKTGGC 92
Query: 100 SEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFN 159
SEDCSYCPQSSRYDTGVK Q+LMTK+ VM+AA++AKEAGSTRFCMGAAWRDTIGRKTNFN
Sbjct: 93 SEDCSYCPQSSRYDTGVKAQRLMTKETVMEAAKRAKEAGSTRFCMGAAWRDTIGRKTNFN 152
Query: 160 QILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYD 219
QIL+YVKDIRDMGMEVCCTLGMLEK QA+ELKKAGLTAYNHNLDTSRE+Y IITTRSYD
Sbjct: 153 QILDYVKDIRDMGMEVCCTLGMLEKQQAVELKKAGLTAYNHNLDTSREYYPNIITTRSYD 212
Query: 220 ERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP 279
ERLETL+HVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINAL++VKGTP
Sbjct: 213 ERLETLQHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALVSVKGTP 272
Query: 280 LQDQKL 285
LQ+QK+
Sbjct: 273 LQEQKV 278
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|28392925|gb|AAO41898.1| putative biotin synthase (Bio B) [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/284 (81%), Positives = 256/284 (90%), Gaps = 5/284 (1%)
Query: 1 MMSFRSLLRSQRSLSLRPSKKFLALHSSCSCYSASAAAIEAERTIREGPRHDWSKDDIKS 60
MM RS+ RSQ LRPS L S+ S SAA+ EAERTIREGPR+DWS+D+IKS
Sbjct: 1 MMLVRSVFRSQ----LRPSVSG-GLQSASCYSSLSAASAEAERTIREGPRNDWSRDEIKS 55
Query: 61 IYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQK 120
+YDSP+LDLLFHGAQVHRH HNFREVQQCTLLSIKTGGCSEDCSYCPQSSRY TGVK Q+
Sbjct: 56 VYDSPLLDLLFHGAQVHRHVHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYSTGVKAQR 115
Query: 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG 180
LM+KDAV+ AA+KAKEAGSTRFCMGAAWRDTIGRKTNF+QILEY+K+IR MGMEVCCTLG
Sbjct: 116 LMSKDAVIDAAKKAKEAGSTRFCMGAAWRDTIGRKTNFSQILEYIKEIRGMGMEVCCTLG 175
Query: 181 MLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGI 240
M+E+ QA+ELKKAGLTAYNHNLDTSRE+Y +ITTRSYD+RLETL HVR+AGINVCSGGI
Sbjct: 176 MIEEQQALELKKAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLSHVRDAGINVCSGGI 235
Query: 241 IGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284
IGLGEAEEDR+GLLHTLATLP+HPESVPINALLAVKGTPL+DQK
Sbjct: 236 IGLGEAEEDRIGLLHTLATLPSHPESVPINALLAVKGTPLEDQK 279
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 289 | ||||||
| TAIR|locus:2005497 | 378 | BIO2 "BIOTIN AUXOTROPH 2" [Ara | 0.847 | 0.648 | 0.832 | 4.6e-112 | |
| ASPGD|ASPL0000006186 | 393 | bioB [Emericella nidulans (tax | 0.844 | 0.620 | 0.586 | 7.1e-77 | |
| POMBASE|SPCC1235.02 | 363 | bio2 "biotin synthase" [Schizo | 0.806 | 0.641 | 0.600 | 6.3e-76 | |
| SGD|S000003518 | 375 | BIO2 "Biotin synthase" [Saccha | 0.809 | 0.624 | 0.550 | 7.7e-71 | |
| UNIPROTKB|Q9KSZ4 | 350 | bioB "Biotin synthase" [Vibrio | 0.795 | 0.657 | 0.538 | 4.1e-65 | |
| TIGR_CMR|VC_1112 | 350 | VC_1112 "biotin synthase" [Vib | 0.795 | 0.657 | 0.538 | 4.1e-65 | |
| CGD|CAL0002565 | 374 | BIO2 [Candida albicans (taxid: | 0.799 | 0.617 | 0.523 | 6e-64 | |
| UNIPROTKB|Q5A974 | 374 | BIO2 "Putative uncharacterized | 0.799 | 0.617 | 0.523 | 6e-64 | |
| UNIPROTKB|P12996 | 346 | bioB "biotin synthase monomer" | 0.799 | 0.667 | 0.540 | 3.3e-63 | |
| TIGR_CMR|CBU_1007 | 321 | CBU_1007 "biotin synthase" [Co | 0.799 | 0.719 | 0.489 | 3.4e-61 |
| TAIR|locus:2005497 BIO2 "BIOTIN AUXOTROPH 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1106 (394.4 bits), Expect = 4.6e-112, P = 4.6e-112
Identities = 204/245 (83%), Positives = 224/245 (91%)
Query: 40 EAERTIREGPRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGC 99
EAERTIREGPR+DWS+D+IKS+YDSP+LDLLFHGAQVHRH HNFREVQQCTLLSIKTGGC
Sbjct: 35 EAERTIREGPRNDWSRDEIKSVYDSPLLDLLFHGAQVHRHVHNFREVQQCTLLSIKTGGC 94
Query: 100 SEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFN 159
SEDCSYCPQSSRY TGVK Q+LM+KDAV+ AA+KAKEAGSTRFCMGAAWRDTIGRKTNF+
Sbjct: 95 SEDCSYCPQSSRYSTGVKAQRLMSKDAVIDAAKKAKEAGSTRFCMGAAWRDTIGRKTNFS 154
Query: 160 QILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYD 219
QILEY+K+IR MGMEVCCTLGM+EK QA+ELKKAGLTAYNHNLDTSRE+Y +ITTRSYD
Sbjct: 155 QILEYIKEIRGMGMEVCCTLGMIEKQQALELKKAGLTAYNHNLDTSREYYPNVITTRSYD 214
Query: 220 ERLETLKHVREAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXXXXESVPINALLAVKGTP 279
+RLETL HVR+AGINVCSGGIIGLGEAEEDR+G ESVPINALLAVKGTP
Sbjct: 215 DRLETLSHVRDAGINVCSGGIIGLGEAEEDRIGLLHTLATLPSHPESVPINALLAVKGTP 274
Query: 280 LQDQK 284
L+DQK
Sbjct: 275 LEDQK 279
|
|
| ASPGD|ASPL0000006186 bioB [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 774 (277.5 bits), Expect = 7.1e-77, P = 7.1e-77
Identities = 143/244 (58%), Positives = 179/244 (73%)
Query: 42 ERTIREGPRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSE 101
E PR +W++D+++ IY++P+ L + A VHR H+ +Q CTL++IKTGGCSE
Sbjct: 39 EAVAATAPRTNWTRDEVQQIYETPLNQLTYAAAAVHRRFHDPSAIQMCTLMNIKTGGCSE 98
Query: 102 DCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQI 161
DCSYC QSSRY TG+K K+ D V++ A+ AK GSTRFCMGAAWRD GRKT+ +
Sbjct: 99 DCSYCAQSSRYSTGLKATKMSPVDDVLEKARIAKANGSTRFCMGAAWRDMRGRKTSLKNV 158
Query: 162 LEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDER 221
+ V +R+MGMEVC TLGM++ QA ELK AGLTAYNHNLDTSREFY IITTRSYDER
Sbjct: 159 KQMVSGVREMGMEVCVTLGMIDADQAKELKDAGLTAYNHNLDTSREFYPTIITTRSYDER 218
Query: 222 LETLKHVREAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXXXXESVPINALLAVKGTPLQ 281
L+TL HVR+AGINVCSGGI+GLGEA+ DR+G ES P+NAL+ +KGTPL
Sbjct: 219 LKTLSHVRDAGINVCSGGILGLGEADSDRIGLIHTVSSLPSHPESFPVNALVPIKGTPLG 278
Query: 282 DQKL 285
D+K+
Sbjct: 279 DRKM 282
|
|
| POMBASE|SPCC1235.02 bio2 "biotin synthase" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 765 (274.4 bits), Expect = 6.3e-76, P = 6.3e-76
Identities = 140/233 (60%), Positives = 178/233 (76%)
Query: 50 RHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQS 109
R++W++++I+ IYD+P++DL+F A +HR H+ ++VQQCTLLSIKTGGC+EDC YC QS
Sbjct: 20 RNNWTREEIQKIYDTPLIDLIFRAASIHRKFHDPKKVQQCTLLSIKTGGCTEDCKYCAQS 79
Query: 110 SRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169
SRY+TGVK KLM D V++ A+ AK GSTRFCMG+AWRD GR F ILE +K++R
Sbjct: 80 SRYNTGVKATKLMKIDEVLEKAKIAKAKGSTRFCMGSAWRDLNGRNRTFKNILEIIKEVR 139
Query: 170 DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVR 229
M MEVC TLGML + QA ELK AGLTAYNHNLDTSRE+YSKII+TR+YDERL T+ ++R
Sbjct: 140 SMDMEVCVTLGMLNEQQAKELKDAGLTAYNHNLDTSREYYSKIISTRTYDERLNTIDNLR 199
Query: 230 EAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXXXXESVPINALLAVKGTPLQD 282
+AG+ VCSGGI+GLGE + DRVG ESVP N L+ + GTP+ D
Sbjct: 200 KAGLKVCSGGILGLGEKKHDRVGLIHSLATMPTHPESVPFNLLVPIPGTPVGD 252
|
|
| SGD|S000003518 BIO2 "Biotin synthase" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
Identities = 130/236 (55%), Positives = 178/236 (75%)
Query: 49 PRHDWSKDDIKSIYDSPVLDLLFHGAQV-HRHAHNFREVQQCTLLSIKTGGCSEDCSYCP 107
P H W+K +K IY +P+L+L H AQ+ HR H+ +VQ CTL++IK+GGCSEDC YC
Sbjct: 49 PSHSWTKSQLKEIYHTPLLELT-HAAQLQHRKWHDPTKVQLCTLMNIKSGGCSEDCKYCA 107
Query: 108 QSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKD 167
QSSR DTG+K +K++ D V++ A++AK GSTRFC+GAAWRD GRK+ +I E V
Sbjct: 108 QSSRNDTGLKAEKMVKVDEVIKEAEEAKRNGSTRFCLGAAWRDMKGRKSAMKRIQEMVTK 167
Query: 168 IRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKH 227
+ DMG+E C TLGM+++ QA +LK AGLTAYNHN+DTSRE YSK+ITTR+YD+RL+T+K+
Sbjct: 168 VNDMGLETCVTLGMVDQDQAKQLKDAGLTAYNHNIDTSREHYSKVITTRTYDDRLQTIKN 227
Query: 228 VREAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXXXXESVPINALLAVKGTPLQDQ 283
V+E+GI C+GGI+GLGE+E+D +G ES+PIN L+A+KGTP+ ++
Sbjct: 228 VQESGIKACTGGILGLGESEDDHIGFIYTLSNMSPHPESLPINRLVAIKGTPMAEE 283
|
|
| UNIPROTKB|Q9KSZ4 bioB "Biotin synthase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
Identities = 125/232 (53%), Positives = 161/232 (69%)
Query: 50 RHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQS 109
RH+W+ ++K++ D P +DLLF QVHR H VQ TLLSIKTG C EDC YCPQS
Sbjct: 4 RHNWTVAEVKALLDKPFMDLLFEAQQVHRLHHPHNHVQVSTLLSIKTGACPEDCKYCPQS 63
Query: 110 SRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169
+ Y T V ++LM + V+ AAQKAK +GSTRFCMGAAW++ ++ + + E ++ ++
Sbjct: 64 AHYRTDVDKERLMEVERVLDAAQKAKNSGSTRFCMGAAWKNP--KERDMPLLKEMIRGVK 121
Query: 170 DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVR 229
DMG+E C TLGML QA +L +AGL YNHNLDTS EFY IITTR+Y +RL+TL HVR
Sbjct: 122 DMGLETCMTLGMLTPDQAQQLAQAGLDYYNHNLDTSPEFYGNIITTRTYQDRLDTLSHVR 181
Query: 230 EAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXXXXESVPINALLAVKGTPLQ 281
+AG+ +CSGGIIG+GE+ DR G ESVPIN L+ VKGTPL+
Sbjct: 182 DAGMKICSGGIIGMGESTNDRAGLLVELANLPTHPESVPINMLVKVKGTPLE 233
|
|
| TIGR_CMR|VC_1112 VC_1112 "biotin synthase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
Identities = 125/232 (53%), Positives = 161/232 (69%)
Query: 50 RHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQS 109
RH+W+ ++K++ D P +DLLF QVHR H VQ TLLSIKTG C EDC YCPQS
Sbjct: 4 RHNWTVAEVKALLDKPFMDLLFEAQQVHRLHHPHNHVQVSTLLSIKTGACPEDCKYCPQS 63
Query: 110 SRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169
+ Y T V ++LM + V+ AAQKAK +GSTRFCMGAAW++ ++ + + E ++ ++
Sbjct: 64 AHYRTDVDKERLMEVERVLDAAQKAKNSGSTRFCMGAAWKNP--KERDMPLLKEMIRGVK 121
Query: 170 DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVR 229
DMG+E C TLGML QA +L +AGL YNHNLDTS EFY IITTR+Y +RL+TL HVR
Sbjct: 122 DMGLETCMTLGMLTPDQAQQLAQAGLDYYNHNLDTSPEFYGNIITTRTYQDRLDTLSHVR 181
Query: 230 EAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXXXXESVPINALLAVKGTPLQ 281
+AG+ +CSGGIIG+GE+ DR G ESVPIN L+ VKGTPL+
Sbjct: 182 DAGMKICSGGIIGMGESTNDRAGLLVELANLPTHPESVPINMLVKVKGTPLE 233
|
|
| CGD|CAL0002565 BIO2 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
Identities = 122/233 (52%), Positives = 166/233 (71%)
Query: 49 PRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQ 108
PR DW+KD+I IY++P++DL+F+ HR EVQ CTL++IK GGC+E+CSYC Q
Sbjct: 50 PRSDWTKDEISKIYNAPLMDLIFNAQLKHREYQKPAEVQLCTLVNIKQGGCTENCSYCSQ 109
Query: 109 SSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDI 168
SS++DTGV+ +KL DAVM A+ AK G TR C+G+AWRD GRK+ ++I + VK I
Sbjct: 110 SSKHDTGVQAEKL-DLDAVMDIARDAKARGGTRVCLGSAWRDMQGRKSALDKISKVVKQI 168
Query: 169 RD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKH 227
D + +E C TLGM+ + QA LK+ GLTAYNHN+DTSRE Y ++TTR+YDERLET+K+
Sbjct: 169 NDELKLETCVTLGMINEKQAEILKQNGLTAYNHNIDTSREHYPNVVTTRTYDERLETIKN 228
Query: 228 VREAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXXXXESVPINALLAVKGTPL 280
V++AGI C+GGI+GLGE +D V ES+PIN L+ ++GTP+
Sbjct: 229 VQKAGIKACTGGILGLGETAQDHVSFLYTLSNMSPHPESLPINRLVPIQGTPI 281
|
|
| UNIPROTKB|Q5A974 BIO2 "Putative uncharacterized protein BIO2" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
Identities = 122/233 (52%), Positives = 166/233 (71%)
Query: 49 PRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQ 108
PR DW+KD+I IY++P++DL+F+ HR EVQ CTL++IK GGC+E+CSYC Q
Sbjct: 50 PRSDWTKDEISKIYNAPLMDLIFNAQLKHREYQKPAEVQLCTLVNIKQGGCTENCSYCSQ 109
Query: 109 SSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDI 168
SS++DTGV+ +KL DAVM A+ AK G TR C+G+AWRD GRK+ ++I + VK I
Sbjct: 110 SSKHDTGVQAEKL-DLDAVMDIARDAKARGGTRVCLGSAWRDMQGRKSALDKISKVVKQI 168
Query: 169 RD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKH 227
D + +E C TLGM+ + QA LK+ GLTAYNHN+DTSRE Y ++TTR+YDERLET+K+
Sbjct: 169 NDELKLETCVTLGMINEKQAEILKQNGLTAYNHNIDTSREHYPNVVTTRTYDERLETIKN 228
Query: 228 VREAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXXXXESVPINALLAVKGTPL 280
V++AGI C+GGI+GLGE +D V ES+PIN L+ ++GTP+
Sbjct: 229 VQKAGIKACTGGILGLGETAQDHVSFLYTLSNMSPHPESLPINRLVPIQGTPI 281
|
|
| UNIPROTKB|P12996 bioB "biotin synthase monomer" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
Identities = 126/233 (54%), Positives = 160/233 (68%)
Query: 50 RHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQS 109
R W+ + +++ P+LDLLF QVHR + R+VQ TLLSIKTG C EDC YCPQS
Sbjct: 4 RPRWTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQS 63
Query: 110 SRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169
SRY TG++ ++LM + V+++A+KAK AGSTRFCMGAAW++ R + + + V+ ++
Sbjct: 64 SRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLE--QMVQGVK 121
Query: 170 DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVR 229
MG+E C TLG L + QA L AGL YNHNLDTS EFY IITTR+Y ERL+TL+ VR
Sbjct: 122 AMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVR 181
Query: 230 EAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXXXXESVPINALLAVKGTPLQD 282
+AGI VCSGGI+GLGE +DR G ESVPIN L+ VKGTPL D
Sbjct: 182 DAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLAD 234
|
|
| TIGR_CMR|CBU_1007 CBU_1007 "biotin synthase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
Identities = 114/233 (48%), Positives = 162/233 (69%)
Query: 52 DWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSR 111
+W++ + +++ P +LL+ + HR + R+++ CTL SIKTG C EDC+YCPQS
Sbjct: 5 NWNQASVAKLFELPFFELLYKAYETHRSHFDVRDMELCTLSSIKTGTCPEDCAYCPQSGH 64
Query: 112 YDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM 171
Y T V+ +KL+ +AV++ A+ AKE G+ RFCMGAAWR K ++LE +K ++ +
Sbjct: 65 YKTDVEREKLINLEAVLEQAKVAKENGARRFCMGAAWRSP--PKRELPKVLEMIKSVKAL 122
Query: 172 GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREA 231
G+E C TLGML++ QA++LK+AGL YNHNLDTS EFY KIITTR+Y +R+ETLK+VR A
Sbjct: 123 GLETCVTLGMLDQEQALQLKEAGLDFYNHNLDTSPEFYKKIITTRTYQDRMETLKNVRNA 182
Query: 232 GINVCSGGIIGLGEAEEDRVGXXXXXXXXXXXXESVPINALLAVKGTPLQDQK 284
GINVC GGI+G+GE+ DR+ S+PIN L+ +KGTPL++ K
Sbjct: 183 GINVCCGGILGMGESRADRIQLLLELYQLPEPPTSIPINQLIPIKGTPLENTK 235
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| A5F2H3 | BIOB_VIBC3 | 2, ., 8, ., 1, ., 6 | 0.5775 | 0.7958 | 0.6571 | yes | no |
| A3M4U4 | BIOB_ACIBT | 2, ., 8, ., 1, ., 6 | 0.5579 | 0.7993 | 0.7021 | yes | no |
| Q7MLV0 | BIOB_VIBVY | 2, ., 8, ., 1, ., 6 | 0.5732 | 0.7958 | 0.6571 | yes | no |
| B1LM66 | BIOB_ECOSM | 2, ., 8, ., 1, ., 6 | 0.5751 | 0.7993 | 0.6676 | yes | no |
| B7H3S4 | BIOB_ACIB3 | 2, ., 8, ., 1, ., 6 | 0.5579 | 0.7993 | 0.7021 | yes | no |
| A7HP26 | BIOB_PARL1 | 2, ., 8, ., 1, ., 6 | 0.5541 | 0.8131 | 0.6952 | yes | no |
| Q87QN6 | BIOB_VIBPA | 2, ., 8, ., 1, ., 6 | 0.5646 | 0.7958 | 0.6571 | yes | no |
| P32451 | BIOB_YEAST | 2, ., 8, ., 1, ., 6 | 0.5310 | 0.8823 | 0.68 | yes | no |
| B1IXJ3 | BIOB_ECOLC | 2, ., 8, ., 1, ., 6 | 0.5751 | 0.7993 | 0.6676 | yes | no |
| Q93GG2 | BIOB_ACICA | 2, ., 8, ., 1, ., 6 | 0.5579 | 0.7993 | 0.7021 | yes | no |
| Q11S94 | BIOB_CYTH3 | 2, ., 8, ., 1, ., 6 | 0.6367 | 0.8062 | 0.6913 | yes | no |
| B7M747 | BIOB_ECO8A | 2, ., 8, ., 1, ., 6 | 0.5751 | 0.7993 | 0.6676 | yes | no |
| B0VR41 | BIOB_ACIBS | 2, ., 8, ., 1, ., 6 | 0.5536 | 0.7993 | 0.7021 | yes | no |
| B1X7A5 | BIOB_ECODH | 2, ., 8, ., 1, ., 6 | 0.5751 | 0.7993 | 0.6676 | yes | no |
| B2J914 | BIOB_NOSP7 | 2, ., 8, ., 1, ., 6 | 0.5847 | 0.8131 | 0.7014 | yes | no |
| B2TVF5 | BIOB_SHIB3 | 2, ., 8, ., 1, ., 6 | 0.5751 | 0.7993 | 0.6676 | yes | no |
| Q2NB65 | BIOB_ERYLH | 2, ., 8, ., 1, ., 6 | 0.5879 | 0.7993 | 0.6774 | yes | no |
| Q0TJS3 | BIOB_ECOL5 | 2, ., 8, ., 1, ., 6 | 0.5793 | 0.7993 | 0.6676 | yes | no |
| Q3M4U9 | BIOB_ANAVT | 2, ., 8, ., 1, ., 6 | 0.5854 | 0.8062 | 0.6955 | yes | no |
| B7LC57 | BIOB_ECO55 | 2, ., 8, ., 1, ., 6 | 0.5751 | 0.7993 | 0.6676 | yes | no |
| A1A917 | BIOB_ECOK1 | 2, ., 8, ., 1, ., 6 | 0.5793 | 0.7993 | 0.6676 | yes | no |
| Q1GTT5 | BIOB_SPHAL | 2, ., 8, ., 1, ., 6 | 0.5879 | 0.7993 | 0.7021 | yes | no |
| A7ZY31 | BIOB_ECOHS | 2, ., 8, ., 1, ., 6 | 0.5751 | 0.7993 | 0.6676 | yes | no |
| B7I4I4 | BIOB_ACIB5 | 2, ., 8, ., 1, ., 6 | 0.5579 | 0.7993 | 0.7021 | yes | no |
| B7NA74 | BIOB_ECOLU | 2, ., 8, ., 1, ., 6 | 0.5751 | 0.7993 | 0.6676 | yes | no |
| Q1REF5 | BIOB_ECOUT | 2, ., 8, ., 1, ., 6 | 0.5793 | 0.7993 | 0.6676 | yes | no |
| Q21FY3 | BIOB_SACD2 | 2, ., 8, ., 1, ., 6 | 0.5489 | 0.8062 | 0.6657 | yes | no |
| B4S0P9 | BIOB_ALTMD | 2, ., 8, ., 1, ., 6 | 0.5584 | 0.7923 | 0.6122 | yes | no |
| Q2GAF7 | BIOB_NOVAD | 2, ., 8, ., 1, ., 6 | 0.5665 | 0.7993 | 0.6488 | yes | no |
| B2UDA1 | BIOB_RALPJ | 2, ., 8, ., 1, ., 6 | 0.5473 | 0.8339 | 0.6713 | yes | no |
| B2HYX9 | BIOB_ACIBC | 2, ., 8, ., 1, ., 6 | 0.5579 | 0.7993 | 0.7021 | yes | no |
| B5YRL4 | BIOB_ECO5E | 2, ., 8, ., 1, ., 6 | 0.5751 | 0.7993 | 0.6676 | yes | no |
| Q324B7 | BIOB_SHIBS | 2, ., 8, ., 1, ., 6 | 0.5751 | 0.7993 | 0.6676 | yes | no |
| Q3Z409 | BIOB_SHISS | 2, ., 8, ., 1, ., 6 | 0.5751 | 0.7993 | 0.6676 | yes | no |
| Q6FAP9 | BIOB_ACIAD | 2, ., 8, ., 1, ., 6 | 0.5579 | 0.7993 | 0.7021 | yes | no |
| Q8D8M9 | BIOB_VIBVU | 2, ., 8, ., 1, ., 6 | 0.5732 | 0.7958 | 0.6571 | yes | no |
| Q9KSZ4 | BIOB_VIBCH | 2, ., 8, ., 1, ., 6 | 0.5775 | 0.7958 | 0.6571 | yes | no |
| B0VCA8 | BIOB_ACIBY | 2, ., 8, ., 1, ., 6 | 0.5579 | 0.7993 | 0.7021 | yes | no |
| A5FLT1 | BIOB_FLAJ1 | 2, ., 8, ., 1, ., 6 | 0.5574 | 0.8096 | 0.6446 | yes | no |
| O59778 | BIOB_SCHPO | 2, ., 8, ., 1, ., 6 | 0.6394 | 0.8062 | 0.6418 | yes | no |
| Q8FJQ3 | BIOB_ECOL6 | 2, ., 8, ., 1, ., 6 | 0.5793 | 0.7993 | 0.6676 | yes | no |
| B7NNK5 | BIOB_ECO7I | 2, ., 8, ., 1, ., 6 | 0.5751 | 0.7993 | 0.6676 | yes | no |
| Q8YVQ3 | BIOB_NOSS1 | 2, ., 8, ., 1, ., 6 | 0.5854 | 0.8062 | 0.6955 | yes | no |
| B7MGN3 | BIOB_ECO45 | 2, ., 8, ., 1, ., 6 | 0.5793 | 0.7993 | 0.6676 | yes | no |
| B7MQM8 | BIOB_ECO81 | 2, ., 8, ., 1, ., 6 | 0.5793 | 0.7993 | 0.6676 | yes | no |
| P54967 | BIOB_ARATH | 2, ., 8, ., 1, ., 6 | 0.8169 | 0.9653 | 0.7380 | yes | no |
| Q6LPR2 | BIOB_PHOPR | 2, ., 8, ., 1, ., 6 | 0.5493 | 0.7993 | 0.66 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 2.8.1.6 | 0.991 |
| 3rd Layer | 2.8.1 | 0.976 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 289 | |||
| PLN02389 | 379 | PLN02389, PLN02389, biotin synthase | 0.0 | |
| TIGR00433 | 296 | TIGR00433, bioB, biotin synthase | 1e-112 | |
| COG0502 | 335 | COG0502, BioB, Biotin synthase and related enzymes | 1e-112 | |
| PRK15108 | 345 | PRK15108, PRK15108, biotin synthase; Provisional | 1e-106 | |
| PRK06256 | 336 | PRK06256, PRK06256, biotin synthase; Validated | 5e-75 | |
| PRK08508 | 279 | PRK08508, PRK08508, biotin synthase; Provisional | 2e-52 | |
| smart00729 | 216 | smart00729, Elp3, Elongator protein 3, MiaB family | 2e-37 | |
| pfam04055 | 165 | pfam04055, Radical_SAM, Radical SAM superfamily | 3e-21 | |
| cd01335 | 204 | cd01335, Radical_SAM, Radical SAM superfamily | 8e-14 | |
| TIGR03910 | 347 | TIGR03910, pyrrolys_PylB, pyrrolysine biosynthesis | 1e-08 | |
| TIGR03957 | 317 | TIGR03957, rSAM_HmdB, 5,10-methenyltetrahydrometha | 5e-07 | |
| COG1060 | 370 | COG1060, ThiH, Thiamine biosynthesis enzyme ThiH a | 8e-07 | |
| PRK07094 | 323 | PRK07094, PRK07094, biotin synthase; Provisional | 9e-06 | |
| COG0320 | 306 | COG0320, LipA, Lipoate synthase [Coenzyme metaboli | 2e-05 | |
| TIGR02668 | 302 | TIGR02668, moaA_archaeal, probable molybdenum cofa | 7e-05 | |
| TIGR03550 | 322 | TIGR03550, F420_cofG, 7,8-didemethyl-8-hydroxy-5-d | 2e-04 | |
| COG1242 | 312 | COG1242, COG1242, Predicted Fe-S oxidoreductase [G | 5e-04 | |
| TIGR01212 | 302 | TIGR01212, TIGR01212, radical SAM protein, TIGR012 | 9e-04 | |
| PRK12928 | 290 | PRK12928, PRK12928, lipoyl synthase; Provisional | 0.001 | |
| PRK05481 | 289 | PRK05481, PRK05481, lipoyl synthase; Provisional | 0.004 |
| >gnl|CDD|215219 PLN02389, PLN02389, biotin synthase | Back alignment and domain information |
|---|
Score = 533 bits (1375), Expect = 0.0
Identities = 227/284 (79%), Positives = 253/284 (89%), Gaps = 6/284 (2%)
Query: 1 MMSFRSLLRSQRSLSLRPSKKFLALHSSCSCYSASAAAIEAERTIREGPRHDWSKDDIKS 60
M RS+ RSQ LRP + SS S S+SAAAI AER IREGPR+DW++D+IK
Sbjct: 1 MALLRSVFRSQ----LRPP--PSSSLSSESSSSSSAAAIAAERAIREGPRNDWTRDEIKE 54
Query: 61 IYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQK 120
+YDSP+LDLLFHGAQVHRHAH+ REVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVK QK
Sbjct: 55 VYDSPLLDLLFHGAQVHRHAHDPREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKAQK 114
Query: 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG 180
LM+KD V++AA++AKEAGSTRFCMGAAWRDT+GRKTNFNQILEYVK+IR MGMEVCCTLG
Sbjct: 115 LMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLG 174
Query: 181 MLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGI 240
MLEK QA +LK+AGLTAYNHNLDTSRE+Y +ITTRSYD+RLETL+ VREAGI+VCSGGI
Sbjct: 175 MLEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGI 234
Query: 241 IGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284
IGLGEAEEDRVGLLHTLATLP HPESVPINAL+AVKGTPL+DQK
Sbjct: 235 IGLGEAEEDRVGLLHTLATLPEHPESVPINALVAVKGTPLEDQK 278
|
Length = 379 |
| >gnl|CDD|232973 TIGR00433, bioB, biotin synthase | Back alignment and domain information |
|---|
Score = 326 bits (839), Expect = e-112
Identities = 106/227 (46%), Positives = 153/227 (67%), Gaps = 6/227 (2%)
Query: 59 KSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKG 118
+ D P+LDLL ++ RH +V C++++ K+GGC EDC YC QS+ Y TG++
Sbjct: 1 LELPDEPLLDLLAAAQRIRRH-FFGNKVDLCSIINAKSGGCPEDCKYCAQSAHYKTGIEK 59
Query: 119 QKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GMEVCC 177
L++ + V++AA+KAK AG++RFCM + R R F ++LE +++I++ G+EVC
Sbjct: 60 YPLLSVEEVLEAAKKAKAAGASRFCMVTSGRGPSDR--EFEKVLEAIREIKEETGLEVCA 117
Query: 178 TLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCS 237
+LG+L + QA LK AG+ YNHNL+TS +Y I TT +YD+RLETLK R+AG++VCS
Sbjct: 118 SLGLLSEEQAQRLKDAGVDRYNHNLETSPSYYPNICTTHTYDDRLETLKRARKAGLSVCS 177
Query: 238 GGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284
GGIIG+GE EDR+ L LA L +SVPIN L+ + GTPL+D
Sbjct: 178 GGIIGMGETMEDRIELAFALAELD--VDSVPINFLVPIPGTPLEDAP 222
|
Catalyzes the last step of the biotin biosynthesis pathway. All members of the seed alignment are in the immediate gene neighborhood of a bioA gene [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 296 |
| >gnl|CDD|223576 COG0502, BioB, Biotin synthase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 326 bits (839), Expect = e-112
Identities = 131/244 (53%), Positives = 170/244 (69%), Gaps = 6/244 (2%)
Query: 43 RTIREGPRHDWSKDDIKSIYDSPVLD-LLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSE 101
R W+ D+ ++ D P D LLF AQ HR + EVQ TL+SIKTG C E
Sbjct: 4 REKVLRRGERWTLDEALALLDLPDEDELLFEAAQKHRLHFDGNEVQLSTLISIKTGCCPE 63
Query: 102 DCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQI 161
DC+YC QS+RY TGVK +KLM + +++AA+KAK AG+TRFCMGAA R GR ++
Sbjct: 64 DCAYCSQSARYKTGVKARKLMEVEEILEAAKKAKAAGATRFCMGAAGRGP-GRD--MEEV 120
Query: 162 LEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDE 220
+E +K +++ +G+EVC +LGML + QA +L AG+ YNHNL+TS EFY IITTR+Y++
Sbjct: 121 VEAIKAVKEELGLEVCASLGMLTEEQAEKLADAGVDRYNHNLETSPEFYENIITTRTYED 180
Query: 221 RLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 280
RL TL++VREAGI VCSGGI+GLGE EDR LL LA LPT P+SVPIN L + GTPL
Sbjct: 181 RLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPT-PDSVPINFLNPIPGTPL 239
Query: 281 QDQK 284
++ K
Sbjct: 240 ENAK 243
|
Length = 335 |
| >gnl|CDD|185063 PRK15108, PRK15108, biotin synthase; Provisional | Back alignment and domain information |
|---|
Score = 313 bits (803), Expect = e-106
Identities = 133/233 (57%), Positives = 168/233 (72%), Gaps = 2/233 (0%)
Query: 50 RHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQS 109
R W+ + +++ P+L+LLF QVHR + R+VQ TLLSIKTG C EDC YCPQS
Sbjct: 4 RPRWTLSQVTELFEKPLLELLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQS 63
Query: 110 SRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169
SRY TG++ ++LM + V+++A+KAK AGSTRFCMGAAW++ R + + + V+ ++
Sbjct: 64 SRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLE--QMVQGVK 121
Query: 170 DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVR 229
MG+E C TLG L + QA L AGL YNHNLDTS EFY IITTR+Y ERL+TL+ VR
Sbjct: 122 AMGLETCMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVR 181
Query: 230 EAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282
+AGI VCSGGI+GLGE +DR GLL LA LPT PESVPIN L+ VKGTPL D
Sbjct: 182 DAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLAD 234
|
Length = 345 |
| >gnl|CDD|235755 PRK06256, PRK06256, biotin synthase; Validated | Back alignment and domain information |
|---|
Score = 232 bits (594), Expect = 5e-75
Identities = 87/234 (37%), Positives = 143/234 (61%), Gaps = 7/234 (2%)
Query: 54 SKDDIKSIYDSPVLDL--LFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSR 111
+K++ ++ + P DL L A R ++V+ T+++ K+G C EDC YC QS+
Sbjct: 21 TKEEALALLEIPDDDLLELLAAAYEVRKHFCGKKVKLNTIINAKSGLCPEDCGYCSQSAG 80
Query: 112 YDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-D 170
V + + +++AA++A E G+ FC+ A+ R G++ +Q++E VK I+ +
Sbjct: 81 SSAPVYRYAWLDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKE--VDQVVEAVKAIKEE 138
Query: 171 MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVRE 230
+E+C LG+L + QA LK+AG+ YNHNL+TSR ++ ++TT +Y++R++T + V+
Sbjct: 139 TDLEICACLGLLTEEQAERLKEAGVDRYNHNLETSRSYFPNVVTTHTYEDRIDTCEMVKA 198
Query: 231 AGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284
AGI CSGGIIG+GE+ EDRV L L +S+PIN L + GTPL++
Sbjct: 199 AGIEPCSGGIIGMGESLEDRVEHAFFLKELD--ADSIPINFLNPIPGTPLENHP 250
|
Length = 336 |
| >gnl|CDD|236279 PRK08508, PRK08508, biotin synthase; Provisional | Back alignment and domain information |
|---|
Score = 172 bits (438), Expect = 2e-52
Identities = 81/205 (39%), Positives = 119/205 (58%), Gaps = 18/205 (8%)
Query: 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAW 148
C + +I +G C EDC YC QS+ Y +K K + ++Q A+ AK G+ FC+
Sbjct: 7 CAISNISSGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKANGALGFCLV--- 63
Query: 149 RDTIGRKTNFNQILEYV--------KDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 200
T GR + ++ LEYV K++ + + C G Q ELKKAG+ +YNH
Sbjct: 64 --TSGRGLD-DKKLEYVAEAAKAVKKEVPGLHLIACN--GTASVEQLKELKKAGIFSYNH 118
Query: 201 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATL 260
NL+TS+EF+ KI TT +++ER +T ++ +EAG+ +CSGGI GLGE+ EDR+ L +LA+L
Sbjct: 119 NLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGLGESWEDRISFLKSLASL 178
Query: 261 PTHPESVPINALLAVKGTPLQDQKL 285
P S PIN + PL+ L
Sbjct: 179 --SPHSTPINFFIPNPALPLKAPTL 201
|
Length = 279 |
| >gnl|CDD|214792 smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 2e-37
Identities = 50/211 (23%), Positives = 85/211 (40%), Gaps = 19/211 (9%)
Query: 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAG-----STRFC 143
L I T GC C++C S +A+++ + E G
Sbjct: 1 PLALYIITRGCPRRCTFCSFPSLRGKLRS----RYLEALVREIELLAEKGEKEGLVGTVF 56
Query: 144 MGAAWRDTIGRKTNFNQILEYVKDI----RDMGMEVCCTLGMLEKHQAIELKKAGLTAYN 199
+G + + ++LE +++I +D+ + + L + LK+AG+ +
Sbjct: 57 IGGGTPTLLSPEQ-LEELLEAIREILGLAKDVEITIETRPDTLTEELLEALKEAGVNRVS 115
Query: 200 HNLDT-SREFYSKIITTRSYDERLETLKHVREAG-INVCSGGIIGL-GEAEEDRVGLLHT 256
+ + E I + ++ LE ++ +REAG I V + I+GL GE EED L
Sbjct: 116 LGVQSGDDEVLKAINRGHTVEDVLEAVELLREAGPIKVSTDLIVGLPGETEEDFEETLKL 175
Query: 257 LATLPTHPESVPINALLAVKGTPLQDQKLKY 287
L L P+ V I L GTPL +
Sbjct: 176 LKEL--GPDRVSIFPLSPRPGTPLAKMYKRL 204
|
This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases. Length = 216 |
| >gnl|CDD|217866 pfam04055, Radical_SAM, Radical SAM superfamily | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 3e-21
Identities = 41/168 (24%), Positives = 74/168 (44%), Gaps = 8/168 (4%)
Query: 94 IKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG 153
I T GC+ C+YC + ++ + +++ A++ G + + +
Sbjct: 2 IVTRGCNLRCTYCAF--PSIRARGKGRELSPEEILEEAKELARLGVEVVILTGG--EPLL 57
Query: 154 RKTNFNQILEYVKDIRDMGMEVCCT--LGMLEKHQAIELKKAGLTAYNHNLDTSREFYSK 211
+ +K G+ + +L++ ELK+AGL + +L + + K
Sbjct: 58 LPDLVELLERLLKLREGEGIRITLETNGTLLDEELLEELKEAGLDRVSISLQSGDDEVLK 117
Query: 212 II-TTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTL 257
II +++E LE L+ +REAGI V I+GL GE +ED L L
Sbjct: 118 IINRGHTFEEVLEALELLREAGIPVVVDNIVGLPGENDEDLEETLELL 165
|
Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerisation, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Length = 165 |
| >gnl|CDD|100105 cd01335, Radical_SAM, Radical SAM superfamily | Back alignment and domain information |
|---|
Score = 68.5 bits (167), Expect = 8e-14
Identities = 51/191 (26%), Positives = 81/191 (42%), Gaps = 14/191 (7%)
Query: 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK 155
T GC+ +C +C + G + + + +AKE G +
Sbjct: 4 TRGCNLNCGFCSNPASKGRGPESPPEIEEIL--DIVLEAKERGVEVVILTGGEPLLYPEL 61
Query: 156 TNFNQILEYVKDIRDMGMEVC-CTLGM-LEKHQAIELKKAGLTAYNHNLDTSREFYSKII 213
+L +K G E+ T G L + ELK+ GL +LD+ E + I
Sbjct: 62 AE---LLRRLKK-ELPGFEISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKI 117
Query: 214 --TTRSYDERLETLKHVREAGINVCSGGIIGLG--EAEEDRVGLLHTLATLPTHPESVPI 269
+ S+ ERLE LK +REAG+ + + ++GLG + E+D L P+ V +
Sbjct: 118 RGSGESFKERLEALKELREAGLGLSTTLLVGLGDEDEEDDLEELELLAEFRS--PDRVSL 175
Query: 270 NALLAVKGTPL 280
LL +GTPL
Sbjct: 176 FRLLPEEGTPL 186
|
Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme of the biosynthesis of molybdopterin. Length = 204 |
| >gnl|CDD|188425 TIGR03910, pyrrolys_PylB, pyrrolysine biosynthesis radical SAM protein | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 1e-08
Identities = 46/193 (23%), Positives = 92/193 (47%), Gaps = 15/193 (7%)
Query: 99 CSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGS--TRFCMGAA---WRDTIG 153
C +C++C + + ++ + T++ + AA+ ++G MG D G
Sbjct: 66 CKNNCAFC-YYRKSNHAIRRYRK-TREEIKAAARALADSGVHLIDLTMGEDPYYHNDPRG 123
Query: 154 RKTNFNQILEYVKDI-RDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT-SREFYSK 211
F ++ E V+ + + G+ V + G+++ +LK+AG Y +T RE Y+K
Sbjct: 124 ----FERLAELVRMVKEETGLPVMISPGVVDNETLKKLKEAGANWYACYQETHDRELYNK 179
Query: 212 IITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINA 271
+ +S+DER+ + +H + G + G + G+G+ ED L + +L + V +
Sbjct: 180 LRVGQSFDERMNSKRHAKRIGYLIEEGILTGVGDDIEDTAISLRGMKSL--DADQVRVMT 237
Query: 272 LLAVKGTPLQDQK 284
+ KGTPL+ +
Sbjct: 238 FVPQKGTPLEGKD 250
|
This model describes a radical SAM protein, PylB, that is part of the three-gene cassette sufficient for the biosynthesis of pyrrolysine (the twenty-second amino acid) when expressed heterologously in E. coli. The pyrrolysine next is ligated to its own tRNA and incorporated at special UAG codons [Amino acid biosynthesis, Other]. Length = 347 |
| >gnl|CDD|188472 TIGR03957, rSAM_HmdB, 5,10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 5e-07
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 189 ELKKAGLTAYNHNLDT-SREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAE 247
EL + G NL+T + E + K+ ++R+ + V + GI + SG +IG+GE+
Sbjct: 137 ELARYGTDTICCNLETTNEELFKKLKPGEELEDRIRVCEMVCKYGIELSSGLLIGIGESY 196
Query: 248 EDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282
EDR+ L L E +PI GTP+++
Sbjct: 197 EDRLEHLKFLKRFENLGE-IPIMGFNPYPGTPMEN 230
|
Members of this archaeal protein family are HmdB, a partially characterized radical SAM protein with an unusual CX5CX2C motif. Its gene flanks the H2-forming methylene-H4-methanopterin dehydrogenase gene hmdA, found in hydrogenotrophic methanogens. HmdB appears to act in in biosynthesis of the novel cofactor of HmdA [Protein fate, Protein modification and repair, Energy metabolism, Methanogenesis]. Length = 317 |
| >gnl|CDD|223988 COG1060, ThiH, Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 8e-07
Identities = 31/182 (17%), Positives = 64/182 (35%), Gaps = 30/182 (16%)
Query: 99 CSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNF 158
C DC++C + G ++ + +++ ++A + G T + + +
Sbjct: 69 CVNDCTFC--AFYRKPGDPKAYTLSPEEILEEVREAVKRGITEVLIVGG----EHPELSL 122
Query: 159 NQILEYVKDIRDMGMEVCC---TLGMLEKHQAI----------ELKKAGL-----TAYNH 200
E + I++ ++ + G + LK+AGL
Sbjct: 123 EYYEELFRTIKEEFPDLHIHALSAGEILFLAREGGLSYEEVLKRLKEAGLDSMPGGGAEI 182
Query: 201 NLDTSREFYS--KIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLA 258
+ R+ + K S +E LE + GI + ++G E EDR+ L +
Sbjct: 183 LSEEVRKIHCPPKK----SPEEWLEIHERAHRLGIPTTATMLLGHVETREDRIDHLEHIR 238
Query: 259 TL 260
L
Sbjct: 239 DL 240
|
Length = 370 |
| >gnl|CDD|180835 PRK07094, PRK07094, biotin synthase; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 9e-06
Identities = 48/201 (23%), Positives = 89/201 (44%), Gaps = 35/201 (17%)
Query: 99 CSEDCSYC------PQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCM-----GAA 147
C +C YC RY ++ + +++ A+KA E G +
Sbjct: 49 CRNNCLYCGLRRDNKNIERY--------RLSPEEILECAKKAYELGYRTIVLQSGEDPYY 100
Query: 148 WRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEK-HQAIEL-KKAGLTAYNHNLDTS 205
+ I + +K+I+ ++V TL + E+ ++ + K+AG Y +T+
Sbjct: 101 TDEKIA---------DIIKEIKK-ELDVAITLSLGERSYEEYKAWKEAGADRYLLRHETA 150
Query: 206 -REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLATLPTH 263
+E Y+K+ S++ R+ LK ++E G V SG ++GL G+ ED + L L
Sbjct: 151 DKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFLKELD-- 208
Query: 264 PESVPINALLAVKGTPLQDQK 284
+ + I + TPL+D+K
Sbjct: 209 LDMIGIGPFIPHPDTPLKDEK 229
|
Length = 323 |
| >gnl|CDD|223397 COG0320, LipA, Lipoate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 189 ELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVC--SGGIIGLGEA 246
+ AG +NHN++T Y ++ +Y+ L L+ +E G ++ SG ++GLGE
Sbjct: 167 IVADAGPDVFNHNVETVPRLYPRVRPGATYERSLSLLERAKELGPDIPTKSGLMVGLGET 226
Query: 247 EEDRVGLLHTL 257
+E+ + ++ L
Sbjct: 227 DEEVIEVMDDL 237
|
Length = 306 |
| >gnl|CDD|233968 TIGR02668, moaA_archaeal, probable molybdenum cofactor biosynthesis protein A, archaeal | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 7e-05
Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 18/144 (12%)
Query: 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK 155
T C+ C YC G ++ + + + + A E G + + T G
Sbjct: 17 TDRCNLSCFYC---HMEGEDRSGGNELSPEEIERIVRVASEFGVRKV------KITGGEP 67
Query: 156 T---NFNQILEYVKD--IRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT-SREFY 209
+ +I+ +KD I+D+ M T G+L + A +LK+AGL N +LDT E Y
Sbjct: 68 LLRKDLIEIIRRIKDYGIKDVSM---TTNGILLEKLAKKLKEAGLDRVNVSLDTLDPEKY 124
Query: 210 SKIITTRSYDERLETLKHVREAGI 233
KI + D +E ++ +AG+
Sbjct: 125 KKITGRGALDRVIEGIESAVDAGL 148
|
This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666) [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin]. Length = 302 |
| >gnl|CDD|132589 TIGR03550, F420_cofG, 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 50/212 (23%), Positives = 86/212 (40%), Gaps = 34/212 (16%)
Query: 99 CSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTR--FCMG-------AAWR 149
C C YC + R G L++ + V++ +K AG T F G R
Sbjct: 14 CRNRCGYC--TFRRPPGELEAALLSPEEVLEILRKGAAAGCTEALFTFGEKPEERYPEAR 71
Query: 150 DTIGRKTNFNQILEYVKDIRDMGMEVCCTL-----GMLEKHQAIELKKA----GLTAYNH 200
+ + ++ LEY++++ ++ +E L G++ + + LK GL
Sbjct: 72 EWLAEM-GYDSTLEYLRELCELALEETGLLPHTNPGVMSRDELARLKPVNASMGLM---- 126
Query: 201 NLDTSREFYSKIITTR-SYD----ERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLH 255
L+T+ E K S RLET++ I +G +IG+GE E+R L
Sbjct: 127 -LETTSERLCKGEAHYGSPGKDPAVRLETIEDAGRLKIPFTTGILIGIGETREERAESLL 185
Query: 256 TLATLPT---HPESVPINALLAVKGTPLQDQK 284
+ L H + V + A GTP+++
Sbjct: 186 AIRELHERYGHIQEVIVQNFRAKPGTPMENHP 217
|
This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 322 |
| >gnl|CDD|224163 COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 5e-04
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 217 SYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAV 275
+ ++ +K +R+ GI VC+ I GL GE ++ + +A L + + ++ L V
Sbjct: 166 DFACYVDAVKRLRKRGIKVCTHLINGLPGETRDEMLETAKIVAELGV--DGIKLHPLHVV 223
Query: 276 KGTPLQDQ 283
KGTP++
Sbjct: 224 KGTPMEKM 231
|
Length = 312 |
| >gnl|CDD|130279 TIGR01212, TIGR01212, radical SAM protein, TIGR01212 family | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 9e-04
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 223 ETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ 281
+ +K R+ GI VCS I+GL GE E+ + ++ L + + I+ L VKGT +
Sbjct: 167 DAVKRARKRGIKVCSHVILGLPGEDREEMMETAKIVSLLDV--DGIKIHPLHVVKGTKMA 224
Query: 282 DQKLK 286
K
Sbjct: 225 KMYEK 229
|
This family has a cluster of conserved Cys residues suggestive of Fe-S cluster binding. Members belong to the radical-SAM family of putative This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain [Unknown function, Enzymes of unknown specificity]. Length = 302 |
| >gnl|CDD|237261 PRK12928, PRK12928, lipoyl synthase; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.001
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 184 KHQAIE-LKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVC--SGGI 240
+ + + + A +NHNL+T + Y L+ L +E ++ SG +
Sbjct: 152 QRERLATVLAAKPDVFNHNLETVPRLQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLM 211
Query: 241 IGLGEAEEDRVGLLHTL 257
+GLGE E++ + L L
Sbjct: 212 LGLGETEDEVIETLRDL 228
|
Length = 290 |
| >gnl|CDD|235493 PRK05481, PRK05481, lipoyl synthase; Provisional | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 0.004
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 198 YNHNLDTSREFYSKIITTR---SYDERLETLKHVREAGINVC--SGGIIGLGEAEE 248
+NHNL+T Y ++ R Y+ LE LK +E + SG ++GLGE +E
Sbjct: 159 FNHNLETVPRLYKRV---RPGADYERSLELLKRAKELHPGIPTKSGLMVGLGETDE 211
|
Length = 289 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 289 | |||
| KOG2900 | 380 | consensus Biotin synthase [Coenzyme transport and | 100.0 | |
| COG0502 | 335 | BioB Biotin synthase and related enzymes [Coenzyme | 100.0 | |
| PLN02389 | 379 | biotin synthase | 100.0 | |
| PRK15108 | 345 | biotin synthase; Provisional | 100.0 | |
| PRK06256 | 336 | biotin synthase; Validated | 100.0 | |
| PRK08444 | 353 | hypothetical protein; Provisional | 100.0 | |
| PRK07094 | 323 | biotin synthase; Provisional | 100.0 | |
| TIGR00433 | 296 | bioB biotin synthetase. Catalyzes the last step of | 100.0 | |
| TIGR03700 | 351 | mena_SCO4494 putative menaquinone biosynthesis pro | 100.0 | |
| PRK09240 | 371 | thiH thiamine biosynthesis protein ThiH; Reviewed | 100.0 | |
| PRK07360 | 371 | FO synthase subunit 2; Reviewed | 100.0 | |
| PRK09613 | 469 | thiH thiamine biosynthesis protein ThiH; Reviewed | 100.0 | |
| PRK05926 | 370 | hypothetical protein; Provisional | 100.0 | |
| PRK08508 | 279 | biotin synthase; Provisional | 100.0 | |
| TIGR03551 | 343 | F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav | 100.0 | |
| TIGR02351 | 366 | thiH thiazole biosynthesis protein ThiH. Members t | 100.0 | |
| PRK05927 | 350 | hypothetical protein; Provisional | 100.0 | |
| TIGR03699 | 340 | mena_SCO4550 menaquinone biosynthesis protein, SCO | 100.0 | |
| PRK08445 | 348 | hypothetical protein; Provisional | 100.0 | |
| PRK09234 | 843 | fbiC FO synthase; Reviewed | 100.0 | |
| PRK09234 | 843 | fbiC FO synthase; Reviewed | 99.97 | |
| PRK06267 | 350 | hypothetical protein; Provisional | 99.97 | |
| COG1060 | 370 | ThiH Thiamine biosynthesis enzyme ThiH and related | 99.96 | |
| TIGR03550 | 322 | F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflav | 99.96 | |
| TIGR00423 | 309 | radical SAM domain protein, CofH subfamily. This p | 99.96 | |
| PRK05481 | 289 | lipoyl synthase; Provisional | 99.95 | |
| PRK06245 | 336 | cofG FO synthase subunit 1; Reviewed | 99.94 | |
| PRK12928 | 290 | lipoyl synthase; Provisional | 99.94 | |
| TIGR03471 | 472 | HpnJ hopanoid biosynthesis associated radical SAM | 99.94 | |
| TIGR01579 | 414 | MiaB-like-C MiaB-like tRNA modifying enzyme. This | 99.94 | |
| PRK14340 | 445 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.93 | |
| TIGR00510 | 302 | lipA lipoate synthase. The family shows strong seq | 99.93 | |
| PRK14331 | 437 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.93 | |
| PRK14327 | 509 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.93 | |
| TIGR02026 | 497 | BchE magnesium-protoporphyrin IX monomethyl ester | 99.93 | |
| TIGR01125 | 430 | MiaB-like tRNA modifying enzyme YliG, TIGR01125. T | 99.93 | |
| PRK14338 | 459 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.93 | |
| PRK14325 | 444 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.93 | |
| PRK14339 | 420 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.93 | |
| PTZ00413 | 398 | lipoate synthase; Provisional | 99.93 | |
| TIGR00089 | 429 | RNA modification enzyme, MiaB family. This subfami | 99.93 | |
| TIGR01578 | 420 | MiaB-like-B MiaB-like tRNA modifying enzyme, archa | 99.92 | |
| PRK14326 | 502 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.92 | |
| PLN02428 | 349 | lipoic acid synthase | 99.92 | |
| PRK14335 | 455 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.92 | |
| PRK14330 | 434 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.92 | |
| PRK14328 | 439 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.92 | |
| PRK14329 | 467 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.92 | |
| PRK14336 | 418 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.92 | |
| TIGR01574 | 438 | miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-3 | 99.92 | |
| PRK08207 | 488 | coproporphyrinogen III oxidase; Provisional | 99.92 | |
| PRK14332 | 449 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.92 | |
| PRK14862 | 440 | rimO ribosomal protein S12 methylthiotransferase; | 99.92 | |
| PRK14334 | 440 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.91 | |
| PRK14337 | 446 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.91 | |
| smart00729 | 216 | Elp3 Elongator protein 3, MiaB family, Radical SAM | 99.91 | |
| PRK14333 | 448 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.91 | |
| COG0621 | 437 | MiaB 2-methylthioadenine synthetase [Translation, | 99.9 | |
| PRK08446 | 350 | coproporphyrinogen III oxidase; Provisional | 99.9 | |
| PRK05904 | 353 | coproporphyrinogen III oxidase; Provisional | 99.9 | |
| PRK08599 | 377 | coproporphyrinogen III oxidase; Provisional | 99.9 | |
| PRK05799 | 374 | coproporphyrinogen III oxidase; Provisional | 99.89 | |
| TIGR00539 | 360 | hemN_rel putative oxygen-independent coproporphyri | 99.89 | |
| PRK05660 | 378 | HemN family oxidoreductase; Provisional | 99.89 | |
| PRK07379 | 400 | coproporphyrinogen III oxidase; Provisional | 99.89 | |
| PRK05628 | 375 | coproporphyrinogen III oxidase; Validated | 99.88 | |
| PRK09058 | 449 | coproporphyrinogen III oxidase; Provisional | 99.88 | |
| PRK09057 | 380 | coproporphyrinogen III oxidase; Provisional | 99.88 | |
| PLN02951 | 373 | Molybderin biosynthesis protein CNX2 | 99.87 | |
| PRK13361 | 329 | molybdenum cofactor biosynthesis protein A; Provis | 99.87 | |
| cd01335 | 204 | Radical_SAM Radical SAM superfamily. Enzymes of th | 99.87 | |
| PRK06294 | 370 | coproporphyrinogen III oxidase; Provisional | 99.87 | |
| TIGR01212 | 302 | radical SAM protein, TIGR01212 family. This unchar | 99.87 | |
| PRK08898 | 394 | coproporphyrinogen III oxidase; Provisional | 99.87 | |
| TIGR02666 | 334 | moaA molybdenum cofactor biosynthesis protein A, b | 99.87 | |
| PRK08208 | 430 | coproporphyrinogen III oxidase; Validated | 99.87 | |
| COG2896 | 322 | MoaA Molybdenum cofactor biosynthesis enzyme [Coen | 99.86 | |
| PRK06582 | 390 | coproporphyrinogen III oxidase; Provisional | 99.86 | |
| TIGR02668 | 302 | moaA_archaeal probable molybdenum cofactor biosynt | 99.86 | |
| TIGR01210 | 313 | conserved hypothetical protein TIGR01210. This fam | 99.85 | |
| PRK00164 | 331 | moaA molybdenum cofactor biosynthesis protein A; R | 99.85 | |
| TIGR00538 | 455 | hemN oxygen-independent coproporphyrinogen III oxi | 99.85 | |
| PRK13347 | 453 | coproporphyrinogen III oxidase; Provisional | 99.83 | |
| PRK09249 | 453 | coproporphyrinogen III oxidase; Provisional | 99.83 | |
| PF04055 | 166 | Radical_SAM: Radical SAM superfamily; InterPro: IP | 99.83 | |
| PRK05301 | 378 | pyrroloquinoline quinone biosynthesis protein PqqE | 99.82 | |
| COG0635 | 416 | HemN Coproporphyrinogen III oxidase and related Fe | 99.82 | |
| COG0320 | 306 | LipA Lipoate synthase [Coenzyme metabolism] | 99.82 | |
| TIGR02109 | 358 | PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. | 99.81 | |
| PRK00955 | 620 | hypothetical protein; Provisional | 99.81 | |
| TIGR01211 | 522 | ELP3 histone acetyltransferase, ELP3 family. The S | 99.81 | |
| PRK01254 | 707 | hypothetical protein; Provisional | 99.81 | |
| COG1032 | 490 | Fe-S oxidoreductase [Energy production and convers | 99.8 | |
| TIGR03470 | 318 | HpnH hopanoid biosynthesis associated radical SAM | 99.8 | |
| PRK08629 | 433 | coproporphyrinogen III oxidase; Provisional | 99.77 | |
| COG1856 | 275 | Uncharacterized homolog of biotin synthetase [Func | 99.75 | |
| TIGR02493 | 235 | PFLA pyruvate formate-lyase 1-activating enzyme. A | 99.75 | |
| TIGR01290 | 442 | nifB nitrogenase cofactor biosynthesis protein Nif | 99.74 | |
| COG2100 | 414 | Predicted Fe-S oxidoreductase [General function pr | 99.73 | |
| COG1242 | 312 | Predicted Fe-S oxidoreductase [General function pr | 99.72 | |
| COG1243 | 515 | ELP3 Histone acetyltransferase [Transcription / Ch | 99.72 | |
| PRK11145 | 246 | pflA pyruvate formate lyase-activating enzyme 1; P | 99.7 | |
| PRK13762 | 322 | tRNA-modifying enzyme; Provisional | 99.69 | |
| TIGR02495 | 191 | NrdG2 anaerobic ribonucleoside-triphosphate reduct | 99.69 | |
| TIGR03822 | 321 | AblA_like_2 lysine-2,3-aminomutase-related protein | 99.66 | |
| PRK14459 | 373 | ribosomal RNA large subunit methyltransferase N; P | 99.66 | |
| PRK14456 | 368 | ribosomal RNA large subunit methyltransferase N; P | 99.65 | |
| PRK14460 | 354 | ribosomal RNA large subunit methyltransferase N; P | 99.64 | |
| PRK13745 | 412 | anaerobic sulfatase-maturase; Provisional | 99.62 | |
| PRK14468 | 343 | ribosomal RNA large subunit methyltransferase N; P | 99.61 | |
| COG0731 | 296 | Fe-S oxidoreductases [Energy production and conver | 99.59 | |
| PRK14469 | 343 | ribosomal RNA large subunit methyltransferase N; P | 99.59 | |
| PRK14455 | 356 | ribosomal RNA large subunit methyltransferase N; P | 99.59 | |
| TIGR00048 | 355 | radical SAM enzyme, Cfr family. A Staphylococcus s | 99.59 | |
| PRK13758 | 370 | anaerobic sulfatase-maturase; Provisional | 99.58 | |
| PRK14470 | 336 | ribosomal RNA large subunit methyltransferase N; P | 99.58 | |
| COG1180 | 260 | PflA Pyruvate-formate lyase-activating enzyme [Pos | 99.57 | |
| KOG2672 | 360 | consensus Lipoate synthase [Coenzyme transport and | 99.57 | |
| PRK14463 | 349 | ribosomal RNA large subunit methyltransferase N; P | 99.56 | |
| PRK14466 | 345 | ribosomal RNA large subunit methyltransferase N; P | 99.56 | |
| COG0535 | 347 | Predicted Fe-S oxidoreductases [General function p | 99.55 | |
| PRK14467 | 348 | ribosomal RNA large subunit methyltransferase N; P | 99.54 | |
| COG0641 | 378 | AslB Arylsulfatase regulator (Fe-S oxidoreductase) | 99.54 | |
| TIGR03278 | 404 | methan_mark_10 putative methanogenesis marker prot | 99.53 | |
| PRK14457 | 345 | ribosomal RNA large subunit methyltransferase N; P | 99.52 | |
| COG1031 | 560 | Uncharacterized Fe-S oxidoreductase [Energy produc | 99.51 | |
| PRK14462 | 356 | ribosomal RNA large subunit methyltransferase N; P | 99.51 | |
| COG2516 | 339 | Biotin synthase-related enzyme [General function p | 99.49 | |
| PRK14464 | 344 | ribosomal RNA large subunit methyltransferase N; P | 99.46 | |
| TIGR00238 | 331 | KamA family protein. Note that the E. coli homolog | 99.45 | |
| PRK14454 | 342 | ribosomal RNA large subunit methyltransferase N; P | 99.44 | |
| PRK14465 | 342 | ribosomal RNA large subunit methyltransferase N; P | 99.44 | |
| PRK11194 | 372 | ribosomal RNA large subunit methyltransferase N; P | 99.44 | |
| TIGR03820 | 417 | lys_2_3_AblA lysine-2,3-aminomutase. This model de | 99.44 | |
| PRK14461 | 371 | ribosomal RNA large subunit methyltransferase N; P | 99.44 | |
| PRK14453 | 347 | chloramphenicol/florfenicol resistance protein; Pr | 99.41 | |
| TIGR03821 | 321 | AblA_like_1 lysine-2,3-aminomutase-related protein | 99.39 | |
| TIGR02494 | 295 | PFLE_PFLC glycyl-radical enzyme activating protein | 99.38 | |
| KOG4355 | 547 | consensus Predicted Fe-S oxidoreductase [General f | 99.38 | |
| COG4277 | 404 | Predicted DNA-binding protein with the Helix-hairp | 99.35 | |
| KOG2492 | 552 | consensus CDK5 activator-binding protein [Signal t | 99.34 | |
| TIGR03365 | 238 | Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosyn | 99.32 | |
| COG2108 | 353 | Uncharacterized conserved protein related to pyruv | 99.26 | |
| COG0820 | 349 | Predicted Fe-S-cluster redox enzyme [General funct | 99.22 | |
| COG5014 | 228 | Predicted Fe-S oxidoreductase [General function pr | 99.21 | |
| KOG2876 | 323 | consensus Molybdenum cofactor biosynthesis pathway | 99.2 | |
| PRK10076 | 213 | pyruvate formate lyase II activase; Provisional | 99.19 | |
| COG1244 | 358 | Predicted Fe-S oxidoreductase [General function pr | 99.08 | |
| COG1533 | 297 | SplB DNA repair photolyase [DNA replication, recom | 99.08 | |
| PF13353 | 139 | Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A | 98.99 | |
| COG1313 | 335 | PflX Uncharacterized Fe-S protein PflX, homolog of | 98.84 | |
| PF13394 | 119 | Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B | 98.65 | |
| TIGR02826 | 147 | RNR_activ_nrdG3 anaerobic ribonucleoside-triphosph | 98.57 | |
| KOG2535 | 554 | consensus RNA polymerase II elongator complex, sub | 98.54 | |
| COG1509 | 369 | KamA Lysine 2,3-aminomutase [Amino acid transport | 98.54 | |
| COG1625 | 414 | Fe-S oxidoreductase, related to NifB/MoaA family [ | 98.47 | |
| TIGR02491 | 154 | NrdG anaerobic ribonucleoside-triphosphate reducta | 98.4 | |
| PRK11121 | 154 | nrdG anaerobic ribonucleotide reductase-activating | 98.36 | |
| COG1964 | 475 | Predicted Fe-S oxidoreductases [General function p | 98.3 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 98.29 | |
| COG0602 | 212 | NrdG Organic radical activating enzymes [Posttrans | 98.13 | |
| TIGR03279 | 433 | cyano_FeS_chp putative FeS-containing Cyanobacteri | 97.98 | |
| cd07948 | 262 | DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s | 97.73 | |
| cd07939 | 259 | DRE_TIM_NifV Streptomyces rubellomurinus FrbC and | 97.7 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 97.66 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 97.58 | |
| TIGR02090 | 363 | LEU1_arch isopropylmalate/citramalate/homocitrate | 97.58 | |
| PF00682 | 237 | HMGL-like: HMGL-like of this family is not conserv | 97.55 | |
| PRK11858 | 378 | aksA trans-homoaconitate synthase; Reviewed | 97.55 | |
| PRK08195 | 337 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac | 97.42 | |
| cd07943 | 263 | DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te | 97.36 | |
| TIGR02660 | 365 | nifV_homocitr homocitrate synthase NifV. This fami | 97.32 | |
| cd07940 | 268 | DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- | 97.21 | |
| PRK05692 | 287 | hydroxymethylglutaryl-CoA lyase; Provisional | 97.12 | |
| PLN02746 | 347 | hydroxymethylglutaryl-CoA lyase | 97.11 | |
| cd07941 | 273 | DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 | 97.1 | |
| PRK09389 | 488 | (R)-citramalate synthase; Provisional | 96.85 | |
| cd07938 | 274 | DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, | 96.78 | |
| PRK00915 | 513 | 2-isopropylmalate synthase; Validated | 96.77 | |
| cd07945 | 280 | DRE_TIM_CMS Leptospira interrogans citramalate syn | 96.61 | |
| cd00739 | 257 | DHPS DHPS subgroup of Pterin binding enzymes. DHPS | 96.37 | |
| cd07937 | 275 | DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar | 96.33 | |
| PRK08091 | 228 | ribulose-phosphate 3-epimerase; Validated | 96.16 | |
| PRK11613 | 282 | folP dihydropteroate synthase; Provisional | 96.08 | |
| PRK12331 | 448 | oxaloacetate decarboxylase; Provisional | 95.91 | |
| TIGR00977 | 526 | LeuA_rel 2-isopropylmalate synthase/homocitrate sy | 95.76 | |
| PRK12344 | 524 | putative alpha-isopropylmalate/homocitrate synthas | 95.75 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 95.71 | |
| TIGR00973 | 494 | leuA_bact 2-isopropylmalate synthase, bacterial ty | 95.58 | |
| PLN03228 | 503 | methylthioalkylmalate synthase; Provisional | 95.54 | |
| COG0119 | 409 | LeuA Isopropylmalate/homocitrate/citramalate synth | 95.48 | |
| PRK14041 | 467 | oxaloacetate decarboxylase; Provisional | 95.47 | |
| PRK14040 | 593 | oxaloacetate decarboxylase; Provisional | 95.42 | |
| PRK08005 | 210 | epimerase; Validated | 95.19 | |
| TIGR01496 | 257 | DHPS dihydropteroate synthase. This model represen | 95.11 | |
| TIGR01108 | 582 | oadA oxaloacetate decarboxylase alpha subunit. Thi | 95.1 | |
| PRK09282 | 592 | pyruvate carboxylase subunit B; Validated | 95.01 | |
| PRK12581 | 468 | oxaloacetate decarboxylase; Provisional | 94.95 | |
| PRK14057 | 254 | epimerase; Provisional | 94.76 | |
| cd00423 | 258 | Pterin_binding Pterin binding enzymes. This family | 94.74 | |
| PRK09722 | 229 | allulose-6-phosphate 3-epimerase; Provisional | 94.7 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 94.59 | |
| cd00003 | 234 | PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase | 94.58 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 94.51 | |
| COG0084 | 256 | TatD Mg-dependent DNase [DNA replication, recombin | 94.49 | |
| PRK08883 | 220 | ribulose-phosphate 3-epimerase; Provisional | 94.47 | |
| PF03740 | 239 | PdxJ: Pyridoxal phosphate biosynthesis protein Pdx | 94.46 | |
| TIGR00559 | 237 | pdxJ pyridoxine 5'-phosphate synthase. PdxJ is req | 94.43 | |
| PRK08745 | 223 | ribulose-phosphate 3-epimerase; Provisional | 94.42 | |
| PRK13753 | 279 | dihydropteroate synthase; Provisional | 94.02 | |
| PRK05265 | 239 | pyridoxine 5'-phosphate synthase; Provisional | 93.88 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 93.64 | |
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 93.61 | |
| COG0036 | 220 | Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate | 93.57 | |
| PF00834 | 201 | Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam | 93.41 | |
| PLN02321 | 632 | 2-isopropylmalate synthase | 93.31 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 93.28 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 92.89 | |
| PTZ00170 | 228 | D-ribulose-5-phosphate 3-epimerase; Provisional | 92.83 | |
| PF05913 | 357 | DUF871: Bacterial protein of unknown function (DUF | 92.72 | |
| cd01299 | 342 | Met_dep_hydrolase_A Metallo-dependent hydrolases, | 92.67 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 92.61 | |
| COG0826 | 347 | Collagenase and related proteases [Posttranslation | 92.58 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 92.47 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 92.42 | |
| TIGR02146 | 344 | LysS_fung_arch homocitrate synthase. This model in | 92.34 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 92.33 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 92.21 | |
| PRK15452 | 443 | putative protease; Provisional | 92.2 | |
| COG2875 | 254 | CobM Precorrin-4 methylase [Coenzyme metabolism] | 92.19 | |
| COG0269 | 217 | SgbH 3-hexulose-6-phosphate synthase and related p | 92.13 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 91.98 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 91.86 | |
| PF07745 | 332 | Glyco_hydro_53: Glycosyl hydrolase family 53; Inte | 91.85 | |
| cd07947 | 279 | DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synt | 91.7 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 91.59 | |
| COG3589 | 360 | Uncharacterized conserved protein [Function unknow | 91.48 | |
| COG2185 | 143 | Sbm Methylmalonyl-CoA mutase, C-terminal domain/su | 91.42 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 91.34 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 91.31 | |
| PF01208 | 343 | URO-D: Uroporphyrinogen decarboxylase (URO-D); Int | 91.22 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 90.99 | |
| TIGR00640 | 132 | acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal | 90.97 | |
| PF09370 | 268 | TIM-br_sig_trns: TIM-barrel signal transduction pr | 90.95 | |
| PRK13397 | 250 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 90.87 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 90.71 | |
| TIGR00284 | 499 | dihydropteroate synthase-related protein. This pro | 90.7 | |
| cd07942 | 284 | DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and | 90.68 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 90.47 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 90.44 | |
| TIGR03586 | 327 | PseI pseudaminic acid synthase. | 90.4 | |
| KOG1160 | 601 | consensus Fe-S oxidoreductase [Energy production a | 90.35 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 90.0 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 89.89 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 89.86 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 89.78 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 89.77 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 89.71 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 89.57 | |
| PF05853 | 272 | DUF849: Prokaryotic protein of unknown function (D | 89.47 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 89.35 | |
| PF04481 | 242 | DUF561: Protein of unknown function (DUF561); Inte | 89.28 | |
| COG0269 | 217 | SgbH 3-hexulose-6-phosphate synthase and related p | 89.02 | |
| PLN02540 | 565 | methylenetetrahydrofolate reductase | 88.96 | |
| PF00809 | 210 | Pterin_bind: Pterin binding enzyme This Prosite en | 88.76 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 88.75 | |
| cd00958 | 235 | DhnA Class I fructose-1,6-bisphosphate (FBP) aldol | 88.68 | |
| KOG3111 | 224 | consensus D-ribulose-5-phosphate 3-epimerase [Carb | 88.52 | |
| TIGR03849 | 237 | arch_ComA phosphosulfolactate synthase. This model | 88.49 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 88.42 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 88.41 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 88.4 | |
| COG5016 | 472 | Pyruvate/oxaloacetate carboxyltransferase [Energy | 88.31 | |
| cd06543 | 294 | GH18_PF-ChiA-like PF-ChiA is an uncharacterized ch | 88.26 | |
| PF01136 | 233 | Peptidase_U32: Peptidase family U32 This is family | 88.23 | |
| cd02071 | 122 | MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 bin | 87.94 | |
| PRK14847 | 333 | hypothetical protein; Provisional | 87.94 | |
| PTZ00124 | 362 | adenosine deaminase; Provisional | 87.89 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 87.84 | |
| PRK07535 | 261 | methyltetrahydrofolate:corrinoid/iron-sulfur prote | 87.84 | |
| COG5016 | 472 | Pyruvate/oxaloacetate carboxyltransferase [Energy | 87.83 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 87.81 | |
| cd07937 | 275 | DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar | 87.74 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 87.67 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 87.61 | |
| PRK13307 | 391 | bifunctional formaldehyde-activating enzyme/3-hexu | 87.1 | |
| TIGR03569 | 329 | NeuB_NnaB N-acetylneuraminate synthase. This famil | 87.02 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 86.93 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 86.92 | |
| PRK14041 | 467 | oxaloacetate decarboxylase; Provisional | 86.88 | |
| COG0854 | 243 | PdxJ Pyridoxal phosphate biosynthesis protein [Coe | 86.79 | |
| KOG0564 | 590 | consensus 5,10-methylenetetrahydrofolate reductase | 86.78 | |
| COG0685 | 291 | MetF 5,10-methylenetetrahydrofolate reductase [Ami | 86.7 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 86.61 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 86.56 | |
| PLN02591 | 250 | tryptophan synthase | 86.5 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 86.4 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 86.4 | |
| KOG2550 | 503 | consensus IMP dehydrogenase/GMP reductase [Nucleot | 86.33 | |
| cd07943 | 263 | DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te | 85.94 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 85.65 | |
| PRK13396 | 352 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 85.49 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 85.36 | |
| COG2089 | 347 | SpsE Sialic acid synthase [Cell envelope biogenesi | 85.32 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 85.32 | |
| PF01729 | 169 | QRPTase_C: Quinolinate phosphoribosyl transferase, | 85.11 | |
| PRK10812 | 265 | putative DNAse; Provisional | 85.1 | |
| PRK11572 | 248 | copper homeostasis protein CutC; Provisional | 84.97 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 84.85 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 84.8 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 84.52 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 84.46 | |
| TIGR00676 | 272 | fadh2 5,10-methylenetetrahydrofolate reductase, pr | 84.43 | |
| COG2896 | 322 | MoaA Molybdenum cofactor biosynthesis enzyme [Coen | 84.38 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 84.37 | |
| PRK12999 | 1146 | pyruvate carboxylase; Reviewed | 84.1 | |
| PF02679 | 244 | ComA: (2R)-phospho-3-sulfolactate synthase (ComA); | 84.0 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 83.37 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 83.36 | |
| PRK11858 | 378 | aksA trans-homoaconitate synthase; Reviewed | 83.23 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 83.21 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 83.04 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 83.04 | |
| COG1751 | 186 | Uncharacterized conserved protein [Function unknow | 82.94 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 82.93 | |
| PRK09282 | 592 | pyruvate carboxylase subunit B; Validated | 82.77 | |
| cd00959 | 203 | DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of | 82.62 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 82.54 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 82.36 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 82.24 | |
| PRK12331 | 448 | oxaloacetate decarboxylase; Provisional | 82.19 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 82.09 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 82.09 | |
| PRK00915 | 513 | 2-isopropylmalate synthase; Validated | 81.9 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 81.81 | |
| TIGR00620 | 199 | sporelyase spore photoproduct lyase. This family i | 81.69 | |
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 81.54 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 81.54 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 81.42 | |
| PRK08195 | 337 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac | 81.36 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 81.09 | |
| cd00537 | 274 | MTHFR Methylenetetrahydrofolate reductase (MTHFR). | 80.5 | |
| COG2513 | 289 | PrpB PEP phosphonomutase and related enzymes [Carb | 80.44 | |
| PRK12581 | 468 | oxaloacetate decarboxylase; Provisional | 80.4 | |
| cd07939 | 259 | DRE_TIM_NifV Streptomyces rubellomurinus FrbC and | 80.38 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 80.29 | |
| PRK00507 | 221 | deoxyribose-phosphate aldolase; Provisional | 80.25 | |
| PRK05692 | 287 | hydroxymethylglutaryl-CoA lyase; Provisional | 80.2 | |
| COG2876 | 286 | AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate ( | 80.06 |
| >KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-49 Score=319.33 Aligned_cols=278 Identities=63% Similarity=1.034 Sum_probs=257.6
Q ss_pred CccchhhhhccccceeecCCccccccccccccccchHHHHHHHHHhcCCCCCCCHHHHHHhhCCChHHHHHHHHHHHHhh
Q 022946 1 MMSFRSLLRSQRSLSLRPSKKFLALHSSCSCYSASAAAIEAERTIREGPRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHA 80 (289)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ee~~~l~~~~~~~l~~~a~~~~r~~ 80 (289)
||+-|+..|.+ ++|+.+ .+.-+.....+.|-+..+..++...++.++|+++|+..+|+.|+++|.+.++.++|+.
T Consensus 1 mM~tr~t~R~q----lr~~~t-~~~~S~t~~ssls~~~a~~~~~~~~~prn~Wtr~eik~iYdtPLldL~f~aa~~HRk~ 75 (380)
T KOG2900|consen 1 MMSTRYTARPQ----LRKYAT-AAVKSTTASSSLSTLGALQYALSLDEPRNSWTRSEIKEIYDTPLLDLTFAAALQHRKW 75 (380)
T ss_pred CcchHHhhHHH----hhhhhh-hhhccchhhhhhhhhhhhHHHhhccCCcccccHHHHHHHhcchHHHHHHHHHHHHhhh
Confidence 78888765443 223222 2234555666777788899999999999999999999999999999999999999999
Q ss_pred hCCCeeEEeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHH
Q 022946 81 HNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQ 160 (289)
Q Consensus 81 ~~g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~ 160 (289)
|++.+|+.+++++|+|.||..+|.||+++..++++.+..+.|..|+|+++++.+++.|.++||++.+|++..|....+.+
T Consensus 76 Hdp~kVQqCTLlsIKtGGCsEDCkYCaQSSRy~TGvKA~klmk~DeVi~~Ak~AK~~GSTRFCmGaAWRD~~GRk~~fk~ 155 (380)
T KOG2900|consen 76 HDPTKVQQCTLLSIKTGGCSEDCKYCAQSSRYDTGVKAEKLMKVDEVIKEAKEAKRNGSTRFCMGAAWRDMKGRKSAFKR 155 (380)
T ss_pred CCccceeeeEEEEeecCCcccccchhhhhcccccchhHHHHhhHHHHHHHHHHHHhcCCceeecchhhhhhccchhHHHH
Confidence 99999999999999999999999999999999999888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEE
Q 022946 161 ILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGI 240 (289)
Q Consensus 161 l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i 240 (289)
++|+|+.++.+|++++++.|.++.+++.+||++|++.+++++|+..|.|.++....+|++++++|+.++++||+++++.|
T Consensus 156 IlE~ikevr~MgmEvCvTLGMv~~qQAkeLKdAGLTAYNHNlDTSREyYskvItTRtYDdRL~Ti~nvr~aGikvCsGGI 235 (380)
T KOG2900|consen 156 ILEMIKEVRDMGMEVCVTLGMVDQQQAKELKDAGLTAYNHNLDTSREYYSKVITTRTYDDRLQTIKNVREAGIKVCSGGI 235 (380)
T ss_pred HHHHHHHHHcCCceeeeeeccccHHHHHHHHhccceecccCccchhhhhcccceecchHHHHHHHHHHHHhcceeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCC
Q 022946 241 IGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ 283 (289)
Q Consensus 241 ~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~ 283 (289)
+|+||.++|.+.++..|..++.+|++|+|+.++|++|||+++.
T Consensus 236 lGLGE~e~DriGlihtLatmp~HPESvPiN~LvaikGTP~~d~ 278 (380)
T KOG2900|consen 236 LGLGESEDDRIGLIHTLATMPPHPESVPINRLVAIKGTPMADE 278 (380)
T ss_pred ccccccccceeeeeeeeccCCCCCcccccceEEecCCcccchh
Confidence 9999999999999999999988999999999999999999984
|
|
| >COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-45 Score=316.67 Aligned_cols=234 Identities=55% Similarity=0.918 Sum_probs=219.5
Q ss_pred CCCCCHHHHHHhhCCChHH-HHHHHHHHHHhhhCCCeeEEeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHH
Q 022946 50 RHDWSKDDIKSIYDSPVLD-LLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVM 128 (289)
Q Consensus 50 ~~~ls~ee~~~l~~~~~~~-l~~~a~~~~r~~~~g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~ 128 (289)
+..||.+|+..+++.|..+ +++.++..+|++|+|+.|.++++|+++|.+|+.+|.||+++.++..+...+..+++|+|+
T Consensus 11 ~~~~~~~e~~~l~~~~~~~~~L~~aA~~~R~~~~g~~V~l~~ii~iktg~c~edC~yC~qS~~~~~~~~~~~l~~~eeIl 90 (335)
T COG0502 11 GERWTLDEALALLDLPDEDELLFEAAQKHRLHFDGNEVQLSTLISIKTGCCPEDCAYCSQSARYKTGVKARKLMEVEEIL 90 (335)
T ss_pred cCCcCHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCeEEEEEEEEeecCCCCCCCCCccccccCcCCCchhhcCCHHHHH
Confidence 5799999999999988777 889999999999999999999999997778899999999998887777788889999999
Q ss_pred HHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCchHH
Q 022946 129 QAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSRE 207 (289)
Q Consensus 129 ~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~~~ 207 (289)
+.++.+++.|+.+++++.+|.+ .+ ...+++.++++.++ ..+++++.+.|.++.+++++|+++|++++++++||.++
T Consensus 91 e~Ak~ak~~Ga~r~c~~aagr~-~~--~~~~~i~~~v~~Vk~~~~le~c~slG~l~~eq~~~L~~aGvd~ynhNLeTs~~ 167 (335)
T COG0502 91 EAAKKAKAAGATRFCMGAAGRG-PG--RDMEEVVEAIKAVKEELGLEVCASLGMLTEEQAEKLADAGVDRYNHNLETSPE 167 (335)
T ss_pred HHHHHHHHcCCceEEEEEeccC-CC--ccHHHHHHHHHHHHHhcCcHHhhccCCCCHHHHHHHHHcChhheecccccCHH
Confidence 9999999999999999988875 33 58899999999999 78999999999999999999999999999999999999
Q ss_pred HHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCCCCC
Q 022946 208 FYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKLKY 287 (289)
Q Consensus 208 ~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~~~~ 287 (289)
.|++++++++|++++++++.++++|++++++.|+|+|||.+|+++++..|+++.. |++|+|+.|+|+|||||++.++++
T Consensus 168 ~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~-pdsVPIn~l~P~~GTPle~~~~~~ 246 (335)
T COG0502 168 FYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPT-PDSVPINFLNPIPGTPLENAKPLD 246 (335)
T ss_pred HHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCC-CCeeeeeeecCCCCCccccCCCCC
Confidence 9999999999999999999999999999999999999999999999999999953 999999999999999999987765
|
|
| >PLN02389 biotin synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=307.60 Aligned_cols=239 Identities=85% Similarity=1.346 Sum_probs=217.6
Q ss_pred CCCCCCHHHHHHhhCCChHHHHHHHHHHHHhhhCCCeeEEeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHH
Q 022946 49 PRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVM 128 (289)
Q Consensus 49 ~~~~ls~ee~~~l~~~~~~~l~~~a~~~~r~~~~g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~ 128 (289)
..+.||.+|++.|++.++.+++..|+.++++++.++.|+++.+++++|++|+.+|.||+++..++.+...++.+++|+|+
T Consensus 43 ~~~~lt~~e~l~L~~~~l~~l~~~A~~vr~~~~~~~~v~~~~i~n~~T~~C~~~C~fCaqs~~~~~~~~~~~~Ls~EeIl 122 (379)
T PLN02389 43 PRNDWTRDEIKEVYDSPLLDLLFHGAQVHRHAHDPREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKAQKLMSKDDVL 122 (379)
T ss_pred ccCCCCHHHHHHHHcCcHHHHHHHHHHHHHHhcCCCEEEEEEEEEeccCCcCcCCCCCCCcccCCCCCcccccCCHHHHH
Confidence 47789999999999878899999999998888778899999999999999999999999986555555556679999999
Q ss_pred HHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCchHHH
Q 022946 129 QAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREF 208 (289)
Q Consensus 129 ~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~~~~ 208 (289)
+.++.+.+.|+++|+++.++....+++..+++++++++.+|+.+++++.++|.++.+.+++|+++|++++.+++||.++.
T Consensus 123 ~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~i~~s~G~l~~E~l~~LkeAGld~~~~~LeTs~~~ 202 (379)
T PLN02389 123 EAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLGMLEKEQAAQLKEAGLTAYNHNLDTSREY 202 (379)
T ss_pred HHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcEEEECCCCCCHHHHHHHHHcCCCEEEeeecCChHH
Confidence 99999999999999998666555676778999999999999888999999999999999999999999999999999889
Q ss_pred HhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCCCCC
Q 022946 209 YSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKLKY 287 (289)
Q Consensus 209 ~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~~~~ 287 (289)
|+++++++++++++++++.+++.|+++++++|+|+|||.+|+.+++.++++++.+++.++++.|+|+|||||++.++++
T Consensus 203 y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGlgEt~edrv~~l~~Lr~L~~~~~~v~l~~l~P~~GTpL~~~~~~s 281 (379)
T PLN02389 203 YPNVITTRSYDDRLETLEAVREAGISVCSGGIIGLGEAEEDRVGLLHTLATLPEHPESVPINALVAVKGTPLEDQKPVE 281 (379)
T ss_pred hCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECCCCCHHHHHHHHHHHHhcccCCcEEecccceecCCCcCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999645899999999999999999987665
|
|
| >PRK15108 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=292.89 Aligned_cols=237 Identities=56% Similarity=0.962 Sum_probs=210.6
Q ss_pred CCCCCCHHHHHHhhCCChHHHHHHHHHHHHhhhCCCeeEEeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHH
Q 022946 49 PRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVM 128 (289)
Q Consensus 49 ~~~~ls~ee~~~l~~~~~~~l~~~a~~~~r~~~~g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~ 128 (289)
..++||.+|++.|++.++.+++..|..++++++.++.++++.++++.|++|+.+|.||+++..+..+...++.+++|||+
T Consensus 3 ~~~~l~~~e~~~l~~~~l~~l~~~A~~ir~~~fg~~~v~l~~i~~~~Tn~C~~~C~yC~~~~~~~~~~~~~~~ls~eEI~ 82 (345)
T PRK15108 3 HRPRWTLSQVTELFEKPLLELLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVL 82 (345)
T ss_pred ccCCCCHHHHHHHHcccHHHHHHHHHHHHHHhcCCCEEEEEEeEEEECCCcCCCCcCCCCcccCCCCCCcccCCCHHHHH
Confidence 36799999999999888899999887777777655789999999888999999999999986444444456679999999
Q ss_pred HHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCchHHH
Q 022946 129 QAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREF 208 (289)
Q Consensus 129 ~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~~~~ 208 (289)
+.++.+.+.|+++|++++++.++. ...++++.++++.+|+.++.++.++|.++.+.+++|+++|+|++++++||.++.
T Consensus 83 ~~a~~~~~~G~~~i~i~~~g~~p~--~~~~e~i~~~i~~ik~~~i~v~~s~G~ls~e~l~~LkeAGld~~n~~leT~p~~ 160 (345)
T PRK15108 83 ESARKAKAAGSTRFCMGAAWKNPH--ERDMPYLEQMVQGVKAMGLETCMTLGTLSESQAQRLANAGLDYYNHNLDTSPEF 160 (345)
T ss_pred HHHHHHHHcCCCEEEEEecCCCCC--cchHHHHHHHHHHHHhCCCEEEEeCCcCCHHHHHHHHHcCCCEEeeccccChHh
Confidence 999999999999999977653321 246799999999999888888889999999999999999999999999999999
Q ss_pred HhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCCCCC
Q 022946 209 YSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKLKY 287 (289)
Q Consensus 209 ~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~~~~ 287 (289)
|.++++++++++++++++.++++|+.+++++|+|+|||.+|+.+++..++++++.++.|+++.|+|.|||||++.++++
T Consensus 161 f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~GlgEt~ed~v~~~~~l~~l~~~~~~ip~~~~~P~~gTpl~~~~~~~ 239 (345)
T PRK15108 161 YGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVD 239 (345)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCCCCHHHHHHHHHHHHhccCCCCEEEeCCccCCCCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999755779999999999999999887654
|
|
| >PRK06256 biotin synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=279.79 Aligned_cols=244 Identities=36% Similarity=0.612 Sum_probs=208.7
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHhhCCC--hHHHHHHHHHHHHhhhCCCeeEEeEeeccccCCCCcCCCCCCCCCCCCC
Q 022946 37 AAIEAERTIREGPRHDWSKDDIKSIYDSP--VLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDT 114 (289)
Q Consensus 37 ~~~~~~~~~~~~~~~~ls~ee~~~l~~~~--~~~l~~~a~~~~r~~~~g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~~ 114 (289)
+..+.+++.. ++.+|.+|+..|++.+ ..+.+..++...|++++|+.+.++.++++.|++|+.+|.||+++..++.
T Consensus 7 ~~~~~~~~~~---g~~~~~~e~~~ll~~~~~~~~~L~~~A~~~r~~~~g~~v~~~~i~~~~s~~C~~~C~fC~~~~~~~~ 83 (336)
T PRK06256 7 ILKLARKLLE---GEGLTKEEALALLEIPDDDLLELLAAAYEVRKHFCGKKVKLNTIINAKSGLCPEDCGYCSQSAGSSA 83 (336)
T ss_pred HHHHHHHHHc---CCCCCHHHHHHHHcCChHHHHHHHHHHHHHHHHhCCCeEEEEEeeeccCCCCCCCCccCCCcCCCCC
Confidence 4667778777 9999999999999743 3444555555557777899999998888889999999999999865443
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-cCceEEEeCCCCCHHHHHHHHHc
Q 022946 115 GVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKA 193 (289)
Q Consensus 115 ~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~~~~i~~~~g~l~~e~l~~L~~a 193 (289)
...+++.+++|+|+++++.+.+.|+.++++++++..+.. ..++++.++++.+++ .++.++++.|.++++.++.|+++
T Consensus 84 ~~~~~~~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~--~~~~~~~e~i~~i~~~~~i~~~~~~g~l~~e~l~~Lkea 161 (336)
T PRK06256 84 PVYRYAWLDIEELIEAAKEAIEEGAGTFCIVASGRGPSG--KEVDQVVEAVKAIKEETDLEICACLGLLTEEQAERLKEA 161 (336)
T ss_pred CCceecCCCHHHHHHHHHHHHHCCCCEEEEEecCCCCCc--hHHHHHHHHHHHHHhcCCCcEEecCCcCCHHHHHHHHHh
Confidence 333456689999999999999999999988765543322 245789999999884 56778888999999999999999
Q ss_pred CCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccce
Q 022946 194 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALL 273 (289)
Q Consensus 194 G~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~ 273 (289)
|++++.+++||.+++++++++++++++++++++.++++|+.+++++|+|+|||.+|+.+++.+++++ +++.++++.|+
T Consensus 162 G~~~v~~~lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~GlgEt~ed~~~~~~~l~~l--~~~~v~i~~l~ 239 (336)
T PRK06256 162 GVDRYNHNLETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGMGESLEDRVEHAFFLKEL--DADSIPINFLN 239 (336)
T ss_pred CCCEEecCCccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeCCCCHHHHHHHHHHHHhC--CCCEEeecccc
Confidence 9999999999988999999999999999999999999999999999999999999999999999999 68999999999
Q ss_pred ecCCCCCCCCCCCC
Q 022946 274 AVKGTPLQDQKLKY 287 (289)
Q Consensus 274 p~pgTpl~~~~~~~ 287 (289)
|.|||||++.++++
T Consensus 240 P~pGT~l~~~~~~~ 253 (336)
T PRK06256 240 PIPGTPLENHPELT 253 (336)
T ss_pred cCCCCCCCCCCCCC
Confidence 99999999987654
|
|
| >PRK08444 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=272.36 Aligned_cols=236 Identities=16% Similarity=0.223 Sum_probs=202.2
Q ss_pred HHHHHHhcCCCCCCCHHHHHHhhCCChHHHHHHHHHHHHhhhCCCeeEEe--EeeccccCCCCcCCCCCCCCCCCCCCCC
Q 022946 40 EAERTIREGPRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQC--TLLSIKTGGCSEDCSYCPQSSRYDTGVK 117 (289)
Q Consensus 40 ~~~~~~~~~~~~~ls~ee~~~l~~~~~~~l~~~a~~~~r~~~~g~~~~~~--~~i~~~t~~C~~~C~fC~~~~~~~~~~~ 117 (289)
+.+++.. +.++|.+|+..|++.++.+|+..|..+ |++++|+.++++ .+|++ ||.|..+|.||+|+...+.. .
T Consensus 3 i~~kv~~---g~~ls~eeal~Ll~~dl~~L~~~A~~v-R~~~~G~~Vt~~~n~~In~-TN~C~~~C~FCaf~~~~~~~-~ 76 (353)
T PRK08444 3 LIEKLEN---NERLNQEEAVKLYDLDLFTLGKYADKK-RTKLHGKKVYFNVNRHINP-TNICADVCKFCAFSAHRKNP-N 76 (353)
T ss_pred HHHHHhc---CCCCCHHHHHHHhhcCHHHHHHHHHHH-HHHhcCCEEEEEecCCccc-ccccccCCccCCCccCCCCC-c
Confidence 5777777 899999999999977666666666666 455569999877 78999 99999999999998654432 3
Q ss_pred CcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--CceEEE-----------eCCCCCH
Q 022946 118 GQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCC-----------TLGMLEK 184 (289)
Q Consensus 118 ~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~i~~-----------~~g~l~~ 184 (289)
.| .+++|+|++.++.+.+.|+++|+|+||.... ..++++.++++.+|+. ++.++. +.|...+
T Consensus 77 ~y-~ls~eeI~~~a~~a~~~G~~ei~iv~G~~p~----~~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~ 151 (353)
T PRK08444 77 PY-TMSHEEILEIVKNSVKRGIKEVHIVSAHNPN----YGYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYE 151 (353)
T ss_pred cc-cCCHHHHHHHHHHHHHCCCCEEEEeccCCCC----CCHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHH
Confidence 45 4899999999999999999999999865422 3678899999999953 567765 6788889
Q ss_pred HHHHHHHHcCCCeEec-CCCch-HHHHhccCCCCC-HHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCC
Q 022946 185 HQAIELKKAGLTAYNH-NLDTS-REFYSKIITTRS-YDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLP 261 (289)
Q Consensus 185 e~l~~L~~aG~~~v~i-~let~-~~~~~~i~~~~~-~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~ 261 (289)
+.+.+|+++|++++.+ +.|.+ +++++.+++++. .++|++.++.++++|+++++++|+|+|||.+|+++++..|+++|
T Consensus 152 e~l~~LkeAGl~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~Gi~~~sg~l~G~gEt~edrv~hl~~Lr~Lq 231 (353)
T PRK08444 152 EVLEDMLEYGVDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKKGKMSNATMLFGHIENREHRIDHMLRLRDLQ 231 (353)
T ss_pred HHHHHHHHhCcccCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHcCCCccceeEEecCCCHHHHHHHHHHHHHhc
Confidence 9999999999999998 69999 999999999775 58899999999999999999999999999999999999999995
Q ss_pred CCCCeeeeccceec----CCCCCCCCCCCCC
Q 022946 262 THPESVPINALLAV----KGTPLQDQKLKYG 288 (289)
Q Consensus 262 ~~~~~v~i~~~~p~----pgTpl~~~~~~~~ 288 (289)
.++++|+.|+|. +||||++.+++++
T Consensus 232 --~~t~gf~~fIp~~f~~~~t~l~~~~~~~~ 260 (353)
T PRK08444 232 --DKTGGFNAFIPLVYQRENNYLKVEKFPSS 260 (353)
T ss_pred --cccCCceEEEecccCCCCCcCCCCCCCCH
Confidence 799999999999 9999998776553
|
|
| >PRK07094 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=266.94 Aligned_cols=226 Identities=24% Similarity=0.395 Sum_probs=193.6
Q ss_pred CCHHHHHHhhCCCh---HHHHHHHHHHHHhhhCCCeeEEeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHH
Q 022946 53 WSKDDIKSIYDSPV---LDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQ 129 (289)
Q Consensus 53 ls~ee~~~l~~~~~---~~l~~~a~~~~r~~~~g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~ 129 (289)
+|.+|++.|++.+. .+.++.+|+..|..++|+.++++++|++ |++|+++|.||+++... ....++. +++++|++
T Consensus 1 ~t~~e~~~ll~~~~~~~~~~L~~~A~~~r~~~~g~~v~~~~~i~~-s~gC~~~C~fC~~~~~~-~~~~r~~-ls~eei~~ 77 (323)
T PRK07094 1 LTRDEILELLSNDDEEELKYLFKAADEVRKKYVGDEVHLRGLIEF-SNYCRNNCLYCGLRRDN-KNIERYR-LSPEEILE 77 (323)
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEE-CCCCCCCCEeCCcccCC-CCCcCcC-CCHHHHHH
Confidence 68999999997543 2235555566666668999999999999 99999999999987532 2223343 69999999
Q ss_pred HHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-cCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HH
Q 022946 130 AAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-RE 207 (289)
Q Consensus 130 ~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~ 207 (289)
+++.+.+.|++.|+|+||..+. ...+++.++++.+++ .++.+..+.|.++++.++.|+++|++++.+++||. ++
T Consensus 78 ~~~~~~~~g~~~i~l~gG~~~~----~~~~~l~~l~~~i~~~~~l~i~~~~g~~~~e~l~~Lk~aG~~~v~~glEs~~~~ 153 (323)
T PRK07094 78 CAKKAYELGYRTIVLQSGEDPY----YTDEKIADIIKEIKKELDVAITLSLGERSYEEYKAWKEAGADRYLLRHETADKE 153 (323)
T ss_pred HHHHHHHCCCCEEEEecCCCCC----CCHHHHHHHHHHHHccCCceEEEecCCCCHHHHHHHHHcCCCEEEeccccCCHH
Confidence 9999999999999998754221 245788899988886 57777778888999999999999999999999999 99
Q ss_pred HHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCCCC
Q 022946 208 FYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKLK 286 (289)
Q Consensus 208 ~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~~~ 286 (289)
+++.+++++++++++++++.++++|+.+++++|+|+ |||.+|+.+++++++++ +++.++++.|+|.|||||++.++.
T Consensus 154 ~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~l~~l--~~~~v~~~~~~P~pgTpl~~~~~~ 231 (323)
T PRK07094 154 LYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFLKEL--DLDMIGIGPFIPHPDTPLKDEKGG 231 (323)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHHHHhC--CCCeeeeeccccCCCCCcccCCCC
Confidence 999999999999999999999999999999999999 99999999999999999 689999999999999999987654
Q ss_pred C
Q 022946 287 Y 287 (289)
Q Consensus 287 ~ 287 (289)
+
T Consensus 232 ~ 232 (323)
T PRK07094 232 S 232 (323)
T ss_pred C
Confidence 3
|
|
| >TIGR00433 bioB biotin synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=251.71 Aligned_cols=223 Identities=50% Similarity=0.890 Sum_probs=188.3
Q ss_pred hhCCChHHHHHHHHHHHHhhhCCCeeEEeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCc
Q 022946 61 IYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGST 140 (289)
Q Consensus 61 l~~~~~~~l~~~a~~~~r~~~~g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~ 140 (289)
||+.+..+++..|+..+++.++++.+.+++++++.|++|+++|.||+++..+..+...++.+++++++++++.+.+.|++
T Consensus 1 ~~~~~~~~l~~~a~~~~~~~~~~~~v~~~~~~~i~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~ 80 (296)
T TIGR00433 1 LFETPLLDLLYEAFQIHRKHFDPRKVQLCTIMNIKSGGCPEDCKYCSQSSRSKTGLPIERLKKVDEVLEEARKAKAAGAT 80 (296)
T ss_pred CccCcHHHHHHHHHHHHHHhcCCCEEEEEEEEecccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCC
Confidence 34558889999999999998889999999999977999999999999976543233345668999999999999889999
Q ss_pred EEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHH
Q 022946 141 RFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYD 219 (289)
Q Consensus 141 ~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~ 219 (289)
++++++++.++.. ....+.+.++.+.+++.++.+..+.|.+++|.++.|+++|++.|.+++| . ++++++++++++++
T Consensus 81 ~~~l~~~g~~~~~-~~~~~~~~~i~~~~~~~~i~~~~~~g~~~~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~~~~s~~ 158 (296)
T TIGR00433 81 RFCLVASGRGPKD-REFMEYVEAMVQIVEEMGLKTCATLGLLDPEQAKRLKDAGLDYYNHNLD-TSQEFYSNIISTHTYD 158 (296)
T ss_pred EEEEEEecCCCCh-HHHHHHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCCEEEEccc-CCHHHHhhccCCCCHH
Confidence 9887654433322 1123344444444446788888888999999999999999999999999 6 99999999989999
Q ss_pred HHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCCCCC
Q 022946 220 ERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKLKY 287 (289)
Q Consensus 220 ~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~~~~ 287 (289)
+++++++.++++|+.+++++|+|++||.+|+.++++++.++ +++.+.++.++|.|||||++.++++
T Consensus 159 ~~~~ai~~l~~~Gi~v~~~~i~Gl~et~~d~~~~~~~l~~l--~~~~i~l~~l~p~~gT~l~~~~~~s 224 (296)
T TIGR00433 159 DRVDTLENAKKAGLKVCSGGIFGLGETVEDRIGLALALANL--PPESVPINFLVKIKGTPLADNKELS 224 (296)
T ss_pred HHHHHHHHHHHcCCEEEEeEEEeCCCCHHHHHHHHHHHHhC--CCCEEEeeeeEEcCCCccCCCCCCC
Confidence 99999999999999999999999999999999999999999 6899999999999999999976654
|
Catalyzes the last step of the biotin biosynthesis pathway. |
| >TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-35 Score=260.26 Aligned_cols=234 Identities=20% Similarity=0.255 Sum_probs=192.3
Q ss_pred HHHHHhcCCCCCCCHHHHHHhhCCC-hHHHHHHHHHHHHhhhCCCeeEEe--EeeccccCCCCcCCCCCCCCCCCCCCCC
Q 022946 41 AERTIREGPRHDWSKDDIKSIYDSP-VLDLLFHGAQVHRHAHNFREVQQC--TLLSIKTGGCSEDCSYCPQSSRYDTGVK 117 (289)
Q Consensus 41 ~~~~~~~~~~~~ls~ee~~~l~~~~-~~~l~~~a~~~~r~~~~g~~~~~~--~~i~~~t~~C~~~C~fC~~~~~~~~~~~ 117 (289)
.+++.. +.++|.+|++.|++.+ +.+|+..|..+ |++++|+.++++ .+|++ |++|+.+|.||++++..+. ..
T Consensus 2 ~~~~~~---~~~ls~~e~~~L~~~~~~~~L~~~A~~v-r~~~~g~~v~~~~~~~in~-Tn~C~~~C~FCa~~~~~~~-~~ 75 (351)
T TIGR03700 2 REKVEA---GQRLSFEDGLFLYASDDLLTLGELAALV-RERKHGDKVYFNVNRHLNY-TNICVNGCAFCAFQRERGE-PG 75 (351)
T ss_pred chHHhC---CCCCCHHHHHHHcCCCcHHHHHHHHHHH-HHHhcCCeEEEeccCCccc-ccccccCCccCceeCCCCC-cc
Confidence 345556 8899999999999754 44555555554 565579999877 78997 9999999999999864432 23
Q ss_pred CcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--CceEEE-----------eCCCCCH
Q 022946 118 GQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCC-----------TLGMLEK 184 (289)
Q Consensus 118 ~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~i~~-----------~~g~l~~ 184 (289)
.+. +++|+|++.++.+.+.|++++++++|.. + ...++++.++++.+|+. ++.+.. ..|..++
T Consensus 76 ~y~-l~~eeI~~~a~~~~~~G~~~v~l~~G~~-p---~~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~ 150 (351)
T TIGR03700 76 AYA-MSLEEIVARVKEAYAPGATEVHIVGGLH-P---NLPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTE 150 (351)
T ss_pred cCC-CCHHHHHHHHHHHHHCCCcEEEEecCCC-C---CCCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHH
Confidence 444 8999999999999999999999987543 2 13568899999999854 355432 2577888
Q ss_pred HHHHHHHHcCCCeEec-CCCch-HHHHhccCCCC-CHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCC
Q 022946 185 HQAIELKKAGLTAYNH-NLDTS-REFYSKIITTR-SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLP 261 (289)
Q Consensus 185 e~l~~L~~aG~~~v~i-~let~-~~~~~~i~~~~-~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~ 261 (289)
+.+++|+++|++++.+ ++|+. +++++++++++ +.++++++++.++++|+++++++|+|+|||++|+.+++..++++
T Consensus 151 e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg~i~GlgEt~edrv~~l~~Lr~l- 229 (351)
T TIGR03700 151 EVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTNATMLYGHIETPAHRVDHMLRLREL- 229 (351)
T ss_pred HHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEeeCCCCHHHHHHHHHHHHHh-
Confidence 9999999999999985 99999 99999999975 67899999999999999999999999999999999999999999
Q ss_pred CCCCeeeeccceec----CCCCCCCC--CCCC
Q 022946 262 THPESVPINALLAV----KGTPLQDQ--KLKY 287 (289)
Q Consensus 262 ~~~~~v~i~~~~p~----pgTpl~~~--~~~~ 287 (289)
++++.+|+.|+|+ +||||++. ++++
T Consensus 230 -~~~~~~f~~fiP~~f~~~~tpl~~~~~~~~~ 260 (351)
T TIGR03700 230 -QDETGGFQAFIPLAFQPDNNRLNRLLAKGPT 260 (351)
T ss_pred -hHhhCCceEEEeecccCCCCcccCCCCCCCC
Confidence 4788899999998 59999876 5443
|
Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein. |
| >PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=257.01 Aligned_cols=237 Identities=21% Similarity=0.287 Sum_probs=196.8
Q ss_pred HHHHHHhcCCCCCCCHHHHHHhhCC---ChHHHHHHHHHHHHhhhCCCeeEEeEeeccccCCCCcCCCCCCCCCCCCCCC
Q 022946 40 EAERTIREGPRHDWSKDDIKSIYDS---PVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGV 116 (289)
Q Consensus 40 ~~~~~~~~~~~~~ls~ee~~~l~~~---~~~~l~~~a~~~~r~~~~g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~~~~ 116 (289)
-.+++.+ ++.||.+|+..|++. +..+.+..+|+..|..++|++++++..+++ |++|+.+|.||+++..++ .
T Consensus 26 ~~~~il~---g~~ls~ee~~~Ll~~~~~~~l~~L~~~A~~ir~~~~G~~v~l~~~in~-Tn~C~~~C~YC~f~~~~~--~ 99 (371)
T PRK09240 26 DVERALN---KDRLSLEDLMALLSPAAEPYLEEMAQKAQRLTRQRFGNTISLYTPLYL-SNYCANDCTYCGFSMSNK--I 99 (371)
T ss_pred HHHHHHh---cCCCCHHHHHHHhCCCChhHHHHHHHHHHHHHHHHcCCEEEEEeceEE-cccccCcCCcCCCCCCCC--C
Confidence 3455556 789999999999974 345556666666666667999999999998 999999999999986543 2
Q ss_pred CCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCC
Q 022946 117 KGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 117 ~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~ 196 (289)
. .+.+++|||+++++.+.+.|+++|+++||. .+. ...++++.++++.+++....+.++.+.++.+.++.|+++|++
T Consensus 100 ~-~~~ls~eEI~~~a~~~~~~Gv~~i~lvgGe-~p~--~~~~e~l~~~i~~Ik~~~p~i~i~~g~lt~e~l~~Lk~aGv~ 175 (371)
T PRK09240 100 K-RKTLDEEEIEREMAAIKKLGFEHILLLTGE-HEA--KVGVDYIRRALPIAREYFSSVSIEVQPLSEEEYAELVELGLD 175 (371)
T ss_pred c-cccCCHHHHHHHHHHHHhCCCCEEEEeeCC-CCC--CCCHHHHHHHHHHHHHhCCCceeccCCCCHHHHHHHHHcCCC
Confidence 2 356899999999999999999999998843 222 246789999999998543344556678999999999999999
Q ss_pred eEecCCCch-HHHHhccCC---CCCHHHHHHHHHHHHHcCCc-eeecEEeecCCCHHHHHHHHHHHhcCCC----CCCee
Q 022946 197 AYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVREAGIN-VCSGGIIGLGEAEEDRVGLLHTLATLPT----HPESV 267 (289)
Q Consensus 197 ~v~i~let~-~~~~~~i~~---~~~~~~~~~~i~~~~~~Gi~-v~~~~i~Glget~ed~~~~l~~l~~l~~----~~~~v 267 (289)
++++++||+ ++.|+.+++ ++++++++++++.++++|+. +++++|+|+||+.+|+.+++..++.|+. .+.+|
T Consensus 176 r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Glge~~~d~~~~a~~l~~L~~~~~~~~~sv 255 (371)
T PRK09240 176 GVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKIGLGALLGLSDWRTDALMTALHLRYLQRKYWQAEYSI 255 (371)
T ss_pred EEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCeeceEEEecCCccHHHHHHHHHHHHHHHHhCCCCceee
Confidence 999999999 999999984 67999999999999999996 9999999999999999999998888742 12479
Q ss_pred eeccceecCCCCCCCCCCCC
Q 022946 268 PINALLAVKGTPLQDQKLKY 287 (289)
Q Consensus 268 ~i~~~~p~pgTpl~~~~~~~ 287 (289)
+|+.|+|.+| |+++.++++
T Consensus 256 ~~~~l~P~~g-~~~~~~~~~ 274 (371)
T PRK09240 256 SFPRLRPCTG-GIEPASIVS 274 (371)
T ss_pred ecCccccCCC-CCCCCCCCC
Confidence 9999999999 998877665
|
|
| >PRK07360 FO synthase subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=257.96 Aligned_cols=240 Identities=19% Similarity=0.257 Sum_probs=197.8
Q ss_pred cchHHHHHHHHHhcCCCCCCCHHHHHHhhCCC---hHHHHHHHHHHHHhhhCCCeeEE--eEeeccccCCCCcCCCCCCC
Q 022946 34 ASAAAIEAERTIREGPRHDWSKDDIKSIYDSP---VLDLLFHGAQVHRHAHNFREVQQ--CTLLSIKTGGCSEDCSYCPQ 108 (289)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~ls~ee~~~l~~~~---~~~l~~~a~~~~r~~~~g~~~~~--~~~i~~~t~~C~~~C~fC~~ 108 (289)
++.+..+.+++.. ++++|.+|++.|++.+ ..+.+..+|+..|++++|+.+++ +..|++ ||.|+.+|.||++
T Consensus 4 ~~~~~~~~~~~~~---g~~ls~~e~~~Ll~~~~~~~l~~L~~~A~~ir~~~~G~~v~~~~~~~i~~-Tn~C~~~C~fC~~ 79 (371)
T PRK07360 4 DQIFEDILERARK---GKDLSKEDALELLETTEPRRIFEILELADRLRKEQVGDTVTYVVNRNINF-TNICEGHCGFCAF 79 (371)
T ss_pred hHHHHHHHHHHhc---CCCCCHHHHHHHhcCCChHHHHHHHHHHHHHHHHhcCCeEEEEeccCccc-chhhhcCCccCCc
Confidence 3456778888888 9999999999999754 25556666676677778999987 456787 9999999999999
Q ss_pred CCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--CceEEE---------
Q 022946 109 SSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCC--------- 177 (289)
Q Consensus 109 ~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~i~~--------- 177 (289)
+... ....++. ++.|+|++.++.+.+.|+++|+|+||. .+.. ...+++.++++.+|+. ++.++.
T Consensus 80 ~~~~-~~~~~y~-ls~eeI~~~a~~a~~~G~~~i~l~~G~-~p~~--~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~ 154 (371)
T PRK07360 80 RRDE-GDHGAFW-LTIAEILEKAAEAVKRGATEVCIQGGL-HPAA--DSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFA 154 (371)
T ss_pred ccCC-CCCCCee-CCHHHHHHHHHHHHhCCCCEEEEccCC-CCCC--CcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHH
Confidence 8653 2334454 899999999999999999999999753 2211 2378899999999853 455543
Q ss_pred --eCCCCCHHHHHHHHHcCCCeEe-cCCCch-HHHHhccCCCC-CHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHH
Q 022946 178 --TLGMLEKHQAIELKKAGLTAYN-HNLDTS-REFYSKIITTR-SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVG 252 (289)
Q Consensus 178 --~~g~l~~e~l~~L~~aG~~~v~-i~let~-~~~~~~i~~~~-~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~ 252 (289)
+.|..+.+.+++|++||++++. .+.+.. +++++.+++++ +.++|+++++.++++|+++++++|+|+|||.+|+++
T Consensus 155 ~~~~G~~~~e~l~~LkeAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~sg~i~G~gEt~edrv~ 234 (371)
T PRK07360 155 AREDGLSYEEVLKALKDAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTSTMMYGHVETPEHRID 234 (371)
T ss_pred HhhcCCCHHHHHHHHHHcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEeeCCCCHHHHHH
Confidence 4688889999999999999997 356666 78888888865 899999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCeeeeccceecC----CCCCCCCC
Q 022946 253 LLHTLATLPTHPESVPINALLAVK----GTPLQDQK 284 (289)
Q Consensus 253 ~l~~l~~l~~~~~~v~i~~~~p~p----gTpl~~~~ 284 (289)
++.+++++ +++.++|..|+|.| ||||++.+
T Consensus 235 ~l~~lr~l--~~~~~g~~~fIp~~f~~~~Tpl~~~~ 268 (371)
T PRK07360 235 HLLILREI--QQETGGITEFVPLPFVHENAPLYERG 268 (371)
T ss_pred HHHHHHHh--chhhCCeeEEEeccccCCCCcccccc
Confidence 99999999 57899999999955 99998764
|
|
| >PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=257.08 Aligned_cols=240 Identities=21% Similarity=0.345 Sum_probs=203.0
Q ss_pred hHHHHHHHHHhcCCCCCCCHHHHHHhhCCC---hHHHHHHHHHHHHhhhCCCeeEEeEeeccccCCCCcCCCCCCCCCCC
Q 022946 36 AAAIEAERTIREGPRHDWSKDDIKSIYDSP---VLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRY 112 (289)
Q Consensus 36 ~~~~~~~~~~~~~~~~~ls~ee~~~l~~~~---~~~l~~~a~~~~r~~~~g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~ 112 (289)
.+..+.+++.. +++||.+|+..|++.+ ..+.++.+|+..|++++|+++.++.++++ ||.|+.+|.||+|+...
T Consensus 32 ~v~~il~Kal~---~~~Ls~eEal~LL~~~~~~~le~L~~~A~~ir~~~~Gn~I~lfapLyi-SN~C~n~C~YCgfs~~n 107 (469)
T PRK09613 32 EIREILEKAKE---KKGLSPEEAAVLLNVEDPELLEEIFEAAREIKEKIYGNRIVLFAPLYI-SNYCVNNCVYCGFRRSN 107 (469)
T ss_pred HHHHHHHHHHc---CCCCCHHHHHHHHcCCChhHHHHHHHHHHHHHHHHcCCEEEEEEeccc-cCCCCCCCccCCCccCC
Confidence 36666777766 9999999999999753 45667777777777778999999999998 99999999999998643
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc----C-c-eEEEeCCCCCHHH
Q 022946 113 DTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM----G-M-EVCCTLGMLEKHQ 186 (289)
Q Consensus 113 ~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~----~-~-~i~~~~g~l~~e~ 186 (289)
....++ .++.|||+++++.+.+.|++++++++|...+ ...++++.++++.+++. + + .+.++.|.++.+.
T Consensus 108 -~~i~r~-~Ls~EEI~~ea~~~~~~G~~~i~LvsGe~p~---~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~ee 182 (469)
T PRK09613 108 -KEIKRK-KLTQEEIREEVKALEDMGHKRLALVAGEDPP---NCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVEN 182 (469)
T ss_pred -CCCCce-ECCHHHHHHHHHHHHHCCCCEEEEEeCCCCC---CCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHH
Confidence 333444 5899999999999999999999998654322 24678899999988853 2 2 4677889999999
Q ss_pred HHHHHHcCCCeEecCCCch-HHHHhccCC---CCCHHHHHHHHHHHHHcCCc-eeecEEeecCCCHHHHHHHHHHHhcC-
Q 022946 187 AIELKKAGLTAYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVREAGIN-VCSGGIIGLGEAEEDRVGLLHTLATL- 260 (289)
Q Consensus 187 l~~L~~aG~~~v~i~let~-~~~~~~i~~---~~~~~~~~~~i~~~~~~Gi~-v~~~~i~Glget~ed~~~~l~~l~~l- 260 (289)
+++|+++|++++.+..||+ +++|+++++ +++|++++++++.++++|+. |++++|+|++++.+|...++..++.|
T Consensus 183 y~~LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~L~GLge~~~E~~~l~~hl~~L~ 262 (469)
T PRK09613 183 YKKLKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGVLFGLYDYKFEVLGLLMHAEHLE 262 (469)
T ss_pred HHHHHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999 999999876 57899999999999999997 99999999999999999998888777
Q ss_pred ---CCCCCeeeeccceecCCCCCCCCC
Q 022946 261 ---PTHPESVPINALLAVKGTPLQDQK 284 (289)
Q Consensus 261 ---~~~~~~v~i~~~~p~pgTpl~~~~ 284 (289)
+.+|+.|++..|.|.+||||++.+
T Consensus 263 ~~~gvgp~tIsvprl~P~~Gtpl~~~~ 289 (469)
T PRK09613 263 ERFGVGPHTISVPRLRPADGSDLENFP 289 (469)
T ss_pred HhhCCCCccccccceecCCCCCcccCC
Confidence 224788999999999999998765
|
|
| >PRK05926 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-34 Score=252.67 Aligned_cols=235 Identities=17% Similarity=0.152 Sum_probs=193.4
Q ss_pred hHHHHHHHHHhcCCCCCCCHHHHHHhhCC---ChHHHHHHHHHHHHhhhCCCeeEEeEeecc-ccCCCCcCCCCCCCCCC
Q 022946 36 AAAIEAERTIREGPRHDWSKDDIKSIYDS---PVLDLLFHGAQVHRHAHNFREVQQCTLLSI-KTGGCSEDCSYCPQSSR 111 (289)
Q Consensus 36 ~~~~~~~~~~~~~~~~~ls~ee~~~l~~~---~~~~l~~~a~~~~r~~~~g~~~~~~~~i~~-~t~~C~~~C~fC~~~~~ 111 (289)
.+..+.+++.. ++++|.+|+..|++. +....+..+|+..|++++|+.++++.++++ +||.|..+|.||++...
T Consensus 14 ~~~~~~~kv~~---g~~ls~eeal~Ll~~~~~~~l~~L~~~A~~iR~~~~G~~V~~~~~~nin~Tn~C~~dC~FCaf~~~ 90 (370)
T PRK05926 14 WLKTLFDDYLS---GARLSEEDALQLLLLTDAEDQRALWSFADLIRANRVGDTVYYSSTLYLYPTNFCQFNCTFCSFYAK 90 (370)
T ss_pred HHHHHHHHHHc---CCCCCHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCCeEEEEEeeeeecCCCCCCCCCccccccC
Confidence 45668888888 899999999999843 334444444454566667999999987765 59999999999998743
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--CceEEEeC----------
Q 022946 112 YDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTL---------- 179 (289)
Q Consensus 112 ~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~i~~~~---------- 179 (289)
.+...++.+++|+|++.++.+ ..|+++|+|++|. .+ ...++++.++++.+++. ++.++...
T Consensus 91 --~~~~~~~~ls~eeI~~~a~~a-~~G~~ei~iv~G~-~p---~~~~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~ 163 (370)
T PRK05926 91 --PGDPKGWFYTPDQLVQSIKEN-PSPITETHIVAGC-FP---SCNLAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKL 163 (370)
T ss_pred --CCCcccccCCHHHHHHHHHHH-hcCCCEEEEEeCc-CC---CCCHHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhh
Confidence 233455669999999999988 6899999999743 33 24678999999999954 46554332
Q ss_pred -CCCCHHHHHHHHHcCCCeEec-CCCch-HHHHhccCCCC-CHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHH
Q 022946 180 -GMLEKHQAIELKKAGLTAYNH-NLDTS-REFYSKIITTR-SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLH 255 (289)
Q Consensus 180 -g~l~~e~l~~L~~aG~~~v~i-~let~-~~~~~~i~~~~-~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~ 255 (289)
+..+++++++|+++|++++.+ |.|+. +++++.++++. +.++|+++++.++++|+++++++|+|+|||.+|+++++.
T Consensus 164 ~~~~~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~~Gi~~~sgmi~G~gEt~edrv~~l~ 243 (370)
T PRK05926 164 DNLPVKEVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHSLGIPSNATMLCYHRETPEDIVTHMS 243 (370)
T ss_pred cCCCHHHHHHHHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCcccCceEEeCCCCHHHHHHHHH
Confidence 346788899999999999998 59999 99999998854 789999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCeeeecccee----cCCCCCCC
Q 022946 256 TLATLPTHPESVPINALLA----VKGTPLQD 282 (289)
Q Consensus 256 ~l~~l~~~~~~v~i~~~~p----~pgTpl~~ 282 (289)
.|+++ ++++++|..|+| .++|||..
T Consensus 244 ~Lr~L--q~~t~gf~~fIp~~f~~~~t~l~~ 272 (370)
T PRK05926 244 KLRAL--QDKTSGFKNFILLKFASENNALGK 272 (370)
T ss_pred HHHhc--CCccCCeeeeEecccCCCCCcccc
Confidence 99999 589999999999 77899864
|
|
| >PRK08508 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=242.84 Aligned_cols=195 Identities=39% Similarity=0.719 Sum_probs=174.3
Q ss_pred CeeEEeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHH
Q 022946 84 REVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILE 163 (289)
Q Consensus 84 ~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e 163 (289)
|++.+++++++.|++|+.+|.||+++..++.....++.+++|+|++.++.+.+.|+++|++++++... . +..++++.+
T Consensus 2 ~~~~~~~i~~~~s~gC~~~C~FCa~~~~~~~~~~~y~~~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~-~-~~~~e~~~e 79 (279)
T PRK08508 2 KEIFLCAISNISSGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKANGALGFCLVTSGRGL-D-DKKLEYVAE 79 (279)
T ss_pred CeEEEEEEeccccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEeccCCC-C-cccHHHHHH
Confidence 67899999999999999999999998755444456666899999999999999999999986544322 2 347789999
Q ss_pred HHHHHHhc--CceEEEeCCCCCHHHHHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEe
Q 022946 164 YVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGII 241 (289)
Q Consensus 164 ~i~~ik~~--~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~ 241 (289)
+++.+|+. ++.++.++|.++.+.+++|+++|++++.+++|+.++.|+++++++++++++++++.++++|+++++++|+
T Consensus 80 i~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~ 159 (279)
T PRK08508 80 AAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIF 159 (279)
T ss_pred HHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEE
Confidence 99999854 5667778999999999999999999999999999889999999999999999999999999999999999
Q ss_pred ecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 242 GLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 242 Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
|+|||.+|+.+++.+++++ ++++|+++.|.|.||||+++
T Consensus 160 GlGEt~ed~~~~l~~lr~L--~~~svpl~~~~p~~~t~~~~ 198 (279)
T PRK08508 160 GLGESWEDRISFLKSLASL--SPHSTPINFFIPNPALPLKA 198 (279)
T ss_pred ecCCCHHHHHHHHHHHHcC--CCCEEeeCCcCCCCCCCCCC
Confidence 9999999999999999999 58899999999999999975
|
|
| >TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=250.42 Aligned_cols=222 Identities=20% Similarity=0.289 Sum_probs=183.1
Q ss_pred CCHHHHHHhhCC-ChHHHHHHHHHHHHhhhCCCeeEE--eEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHH
Q 022946 53 WSKDDIKSIYDS-PVLDLLFHGAQVHRHAHNFREVQQ--CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQ 129 (289)
Q Consensus 53 ls~ee~~~l~~~-~~~~l~~~a~~~~r~~~~g~~~~~--~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~ 129 (289)
+|++|++.||+. +..+.+..+|+..|++++|+++++ +..+++ |++|+.+|.||+++... .....+. +++|+|++
T Consensus 1 ls~~e~~~ll~~~~~~~~L~~~A~~ir~~~~g~~v~~~~~~~i~~-T~~C~~~C~FC~~~~~~-~~~~~y~-ls~eeI~e 77 (343)
T TIGR03551 1 ITKEEALELFEARGNLFELFRLADELRRDIVGDTVTYVVNRNINF-TNVCYGGCGFCAFRKRK-GDADAYL-LSLEEIAE 77 (343)
T ss_pred CCHHHHHHHHhCCChHHHHHHHHHHHHHHhcCCeEEEEeeecccc-ccccccCCccCCCccCC-CCCCccc-CCHHHHHH
Confidence 689999999965 444445555555566667999986 456777 99999999999998543 2223344 89999999
Q ss_pred HHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--CceEEE-----------eCCCCCHHHHHHHHHcCCC
Q 022946 130 AAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCC-----------TLGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 130 ~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~i~~-----------~~g~l~~e~l~~L~~aG~~ 196 (289)
+++.+.+.|+++|+|+||.. + ....+++.++++.+++. ++.+.+ +.|.++++.+++|++||++
T Consensus 78 ~~~~~~~~G~~~i~l~gG~~-p---~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl~ 153 (343)
T TIGR03551 78 RAAEAWKAGATEVCIQGGIH-P---DLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLD 153 (343)
T ss_pred HHHHHHHCCCCEEEEEeCCC-C---CCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHhCcc
Confidence 99999999999999996532 2 13567888888888854 455443 4688899999999999999
Q ss_pred eEe-cCCCch-HHHHhccCCCC-CHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccce
Q 022946 197 AYN-HNLDTS-REFYSKIITTR-SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALL 273 (289)
Q Consensus 197 ~v~-i~let~-~~~~~~i~~~~-~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~ 273 (289)
++. .+.|+. +++++++++++ ++++++++++.++++|+++++++|+|++||.+|+.+++.+++++ +++..+|..|+
T Consensus 154 ~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~G~~Et~ed~~~~l~~lr~l--~~~~~~~~~~i 231 (343)
T TIGR03551 154 SMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMYGHVETPEHWVDHLLILREI--QEETGGFTEFV 231 (343)
T ss_pred cccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEEecCCCHHHHHHHHHHHHHh--hHHhCCeeEEE
Confidence 998 477998 99999999976 99999999999999999999999999999999999999999999 57888999999
Q ss_pred ecC----CCCCCCC
Q 022946 274 AVK----GTPLQDQ 283 (289)
Q Consensus 274 p~p----gTpl~~~ 283 (289)
|+| ||||++.
T Consensus 232 P~~f~~~gT~l~~~ 245 (343)
T TIGR03551 232 PLPFVHYNAPLYLK 245 (343)
T ss_pred eccccCCCCccccc
Confidence 976 9999853
|
This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases. |
| >TIGR02351 thiH thiazole biosynthesis protein ThiH | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-33 Score=247.62 Aligned_cols=238 Identities=18% Similarity=0.253 Sum_probs=194.0
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHhhCCC---hHHHHHHHHHHHHhhhCCCeeEEeEeeccccCCCCcCCCCCCCCCCCCCC
Q 022946 39 IEAERTIREGPRHDWSKDDIKSIYDSP---VLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTG 115 (289)
Q Consensus 39 ~~~~~~~~~~~~~~ls~ee~~~l~~~~---~~~l~~~a~~~~r~~~~g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~~~ 115 (289)
.-.+++.+ ++.+|.+|+..|++.+ ..+.+..+|...|.+++|+.+.++.++++ |+.|+++|.||+++..++
T Consensus 24 ~~~~~~l~---g~~ls~~e~~~Ll~~~~~~~l~~L~~~A~~ir~~~~G~~v~l~~~i~~-Tn~C~~~C~yC~~s~~~~-- 97 (366)
T TIGR02351 24 ADVERALN---KRHLSLEDFLALLSPAAEPYLEEMAQKAKKLTRKRFGNTISLFTPLYL-SNYCSNKCVYCGFSMSNK-- 97 (366)
T ss_pred HHHHHHHh---CCCCCHHHHHHHhCCCchHHHHHHHHHHHHHHHHHcCCEEEEEeeeeE-CccccCCCCcCCCCCCCC--
Confidence 34555556 8999999999999753 34445555555566667999999989996 999999999999986432
Q ss_pred CCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCC
Q 022946 116 VKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGL 195 (289)
Q Consensus 116 ~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~ 195 (289)
..+ ..++.|+|.+.++.+.+.|+++|+++||. .+. ...++++.++++.+++....+.+..+.++.+.++.|+++|+
T Consensus 98 ~~~-~~Ls~eEI~~~a~~~~~~Gv~~i~lvgGe-~p~--~~~~e~l~eii~~Ik~~~p~i~Iei~~lt~e~~~~Lk~aGv 173 (366)
T TIGR02351 98 IKR-KKLNEEEIEREIEAIKKSGFKEILLVTGE-SEK--AAGVEYIAEAIKLAREYFSSLAIEVQPLNEEEYKKLVEAGL 173 (366)
T ss_pred Ccc-CcCCHHHHHHHHHHHHhCCCCEEEEeeCC-CCC--CCCHHHHHHHHHHHHHhCCccccccccCCHHHHHHHHHcCC
Confidence 233 55899999999999999999999998643 221 24678999999999864322223345699999999999999
Q ss_pred CeEecCCCch-HHHHhccC---CCCCHHHHHHHHHHHHHcCCc-eeecEEeecCCCHHHHHHHHHHHhcCCC----CCCe
Q 022946 196 TAYNHNLDTS-REFYSKII---TTRSYDERLETLKHVREAGIN-VCSGGIIGLGEAEEDRVGLLHTLATLPT----HPES 266 (289)
Q Consensus 196 ~~v~i~let~-~~~~~~i~---~~~~~~~~~~~i~~~~~~Gi~-v~~~~i~Glget~ed~~~~l~~l~~l~~----~~~~ 266 (289)
+++++++||+ ++.|+.++ +++++++++++++.++++|+. +++++|+|++++.+|..+++..++.|+. ...+
T Consensus 174 ~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Gl~e~~~d~~~~a~~l~~L~~~~~~~~~s 253 (366)
T TIGR02351 174 DGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKIGIGALLGLDDWRTDAFFTAYHLRYLQKKYWKTEIS 253 (366)
T ss_pred CEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCeeceeEEEeCchhHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 9999999999 99999998 567999999999999999997 9999999999999999998888877742 1368
Q ss_pred eeeccceecCCCCCCCCCCCC
Q 022946 267 VPINALLAVKGTPLQDQKLKY 287 (289)
Q Consensus 267 v~i~~~~p~pgTpl~~~~~~~ 287 (289)
|+++.++|.+| |++..++++
T Consensus 254 v~~~~l~P~~g-~~~~~~~l~ 273 (366)
T TIGR02351 254 ISVPRLRPCTN-GLKPKVIVT 273 (366)
T ss_pred ccccccccCCC-CCCCCCcCC
Confidence 99999999999 998876654
|
Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes. |
| >PRK05927 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=247.95 Aligned_cols=226 Identities=15% Similarity=0.139 Sum_probs=184.7
Q ss_pred CCCCCCHHHHHHhhCCC-hHHHHHHHHHHHHhhhCCCeeE--EeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHH
Q 022946 49 PRHDWSKDDIKSIYDSP-VLDLLFHGAQVHRHAHNFREVQ--QCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKD 125 (289)
Q Consensus 49 ~~~~ls~ee~~~l~~~~-~~~l~~~a~~~~r~~~~g~~~~--~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~e 125 (289)
.++++|.+|++.|++.+ +.+|...|..++++++.|+.++ ++..+++ ||.|+.+|.||+++...+ ...+ +.++.|
T Consensus 3 ~~~~is~ee~l~L~~~~~l~~L~~~A~~iR~~~~~G~~V~~i~n~~i~~-Tn~C~~~C~fCaf~~~~~-~~~~-y~ls~e 79 (350)
T PRK05927 3 LPARISFQEGLELFLYSPLEELQEHADSLRKQRYPQNTVTYVLDANPNY-TNICKIDCTFCAFYRKPH-SSDA-YLLSFD 79 (350)
T ss_pred CccCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCeEEEEcccCCcc-chhhhcCCccCCccCCCC-Cccc-cccCHH
Confidence 37899999999999654 4555555555544443378888 4566777 999999999999986432 2233 359999
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--CceE-----------EEeCCCCCHHHHHHHHH
Q 022946 126 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEV-----------CCTLGMLEKHQAIELKK 192 (289)
Q Consensus 126 ei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~i-----------~~~~g~l~~e~l~~L~~ 192 (289)
+|++.++.+.+.|+++++|+||.. + ...++++.++++.+|+. ++.+ +.+.|.++++.+++|++
T Consensus 80 ei~~~a~~~~~~G~~~i~i~gG~~-p---~~~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G~~~~e~l~~Lk~ 155 (350)
T PRK05927 80 EFRSLMQRYVSAGVKTVLLQGGVH-P---QLGIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSGISTEQALERLWD 155 (350)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCC-C---CCCHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 999999999999999999986543 2 24678999999999843 3432 34579999999999999
Q ss_pred cCCCeEec-CCCch-HHHHhccCCCC-CHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeee
Q 022946 193 AGLTAYNH-NLDTS-REFYSKIITTR-SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPI 269 (289)
Q Consensus 193 aG~~~v~i-~let~-~~~~~~i~~~~-~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i 269 (289)
+|++++.+ ++|++ +++++.+++.+ +.++|+++++.+++.|+++++++|+|+|||.+|+++++..|+++| .+..+|
T Consensus 156 aGl~~l~g~~~Et~~~~~~~~~~p~k~~~~~rl~~i~~A~~lGi~~~sg~l~G~gEt~e~ri~~l~~Lr~lq--d~~~gf 233 (350)
T PRK05927 156 AGQRTIPGGGAEILSERVRKIISPKKMGPDGWIQFHKLAHRLGFRSTATMMFGHVESPEDILLHLQTLRDAQ--DENPGF 233 (350)
T ss_pred cCcccCCCCCchhCCHHHhhccCCCCCCHHHHHHHHHHHHHcCCCcCceeEEeeCCCHHHHHHHHHHHHHhh--HhhCCe
Confidence 99999998 89999 88888888866 589999999999999999999999999999999999999999996 455678
Q ss_pred ccceec----CCCCCCCC
Q 022946 270 NALLAV----KGTPLQDQ 283 (289)
Q Consensus 270 ~~~~p~----pgTpl~~~ 283 (289)
..|+|+ ++|||+..
T Consensus 234 ~~fIp~~~~~~~tpl~~~ 251 (350)
T PRK05927 234 YSFIPWSYKPGNTALGRR 251 (350)
T ss_pred eeeeecCcCCCCCccccC
Confidence 888887 78999754
|
|
| >TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-32 Score=242.48 Aligned_cols=228 Identities=17% Similarity=0.201 Sum_probs=180.8
Q ss_pred CCCCHHHHHHhhCCChHHHHHHHHHHHHhhhC-CCeeEEe--EeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHH
Q 022946 51 HDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHN-FREVQQC--TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAV 127 (289)
Q Consensus 51 ~~ls~ee~~~l~~~~~~~l~~~a~~~~r~~~~-g~~~~~~--~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei 127 (289)
+++|++|++.|++....+.+..+|+..|++++ |++++++ ..+++ |++|+.+|.||++++.. +....+.+++|+|
T Consensus 1 ~~l~~~~~~~ll~~~~~~~l~~~A~~vr~~~~~g~~v~~~~~~~i~~-s~~C~~~C~fC~~~~~~--~~~~~~~ls~eei 77 (340)
T TIGR03699 1 ERLSREEALELYKEADLLALGALADEVRRRRHPGNIVTFVVDRNINY-TNICVVGCKFCAFYRAP--GHPEGYVLSVEEI 77 (340)
T ss_pred CCCCHHHHHHHccCCcHHHHHHHHHHHHHHhcCCCeEEEEeeccccc-chhhccCCccCCcccCC--CCccccCCCHHHH
Confidence 47899999999975444444444444455556 9999864 55666 99999999999976432 1122345899999
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcC--ceE-----------EEeCCCCCHHHHHHHHHcC
Q 022946 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG--MEV-----------CCTLGMLEKHQAIELKKAG 194 (289)
Q Consensus 128 ~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~--~~i-----------~~~~g~l~~e~l~~L~~aG 194 (289)
++.++.+.+.|+++|+|+|+.. +. ...+++.++++.+++.+ +.+ +.++|.++++.+++|+++|
T Consensus 78 ~~~~~~~~~~G~~~i~l~gG~~-p~---~~~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g~~~~e~l~~Lk~aG 153 (340)
T TIGR03699 78 LQKIEELVAYGGTQILLQGGVN-PD---LGLDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEGLSLREVLERLKEAG 153 (340)
T ss_pred HHHHHHHHHcCCcEEEEecCCC-CC---CCHHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCCCCHHHHHHHHHHcC
Confidence 9999999999999999987542 21 24566777888887443 322 2356777799999999999
Q ss_pred CCeEec-CCCch-HHHHhccCCC-CCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeecc
Q 022946 195 LTAYNH-NLDTS-REFYSKIITT-RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINA 271 (289)
Q Consensus 195 ~~~v~i-~let~-~~~~~~i~~~-~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~ 271 (289)
++++.+ ++|+. +++++.+.++ .++++++++++.++++|+++++++|+|+|||.+|+.+++.+++++ +++..++..
T Consensus 154 ~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGlgEt~ed~~~~l~~l~~l--~~~~~~~~~ 231 (340)
T TIGR03699 154 LDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGHVETLEDRIEHLERIREL--QDKTGGFTA 231 (340)
T ss_pred CCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeCCCCHHHHHHHHHHHHHh--chhhCCeeE
Confidence 999995 79999 9999999875 589999999999999999999999999999999999999999999 467877877
Q ss_pred ceec----CCCCCCCCCCCC
Q 022946 272 LLAV----KGTPLQDQKLKY 287 (289)
Q Consensus 272 ~~p~----pgTpl~~~~~~~ 287 (289)
|+|. +||||++.++++
T Consensus 232 fIP~~f~p~~tpl~~~~~~~ 251 (340)
T TIGR03699 232 FIPWTFQPGNTELGKKRPAT 251 (340)
T ss_pred EEeecccCCCCcccCCCCCC
Confidence 7774 799999866654
|
members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine. |
| >PRK08445 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-32 Score=240.81 Aligned_cols=222 Identities=14% Similarity=0.185 Sum_probs=175.9
Q ss_pred CCCCHHHHHHhhCCC-hHHHHHHHHHHHHhhhCCCeeEE---eEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHH
Q 022946 51 HDWSKDDIKSIYDSP-VLDLLFHGAQVHRHAHNFREVQQ---CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDA 126 (289)
Q Consensus 51 ~~ls~ee~~~l~~~~-~~~l~~~a~~~~r~~~~g~~~~~---~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~ee 126 (289)
+++|.+|++.|++.+ +.+|+..|..+ |++++|+.+.+ +.+|++ |++|+.+|.||++++..+.. .+| .+++|+
T Consensus 2 ~~ls~~e~l~Ll~~~~l~~L~~~A~~v-r~~~~g~~v~~~~~~~~in~-Tn~C~~~C~FCa~~~~~~~~-~~y-~l~~ee 77 (348)
T PRK08445 2 KRLSKEEALDLIKNAPLKELGEMALER-KQELHPEKITTFIVDRNINY-TNICWVDCKFCAFYRHLKED-DAY-ILSFEE 77 (348)
T ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHH-HHHHcCCcEEEEeccccccc-ccccccCCccCCCccCCCCC-CCe-eCCHHH
Confidence 589999999999654 45555555555 55556777654 566998 99999999999998654322 445 589999
Q ss_pred HHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcC--ceEEE----------e-CCCCCHHHHHHHHHc
Q 022946 127 VMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG--MEVCC----------T-LGMLEKHQAIELKKA 193 (289)
Q Consensus 127 i~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~--~~i~~----------~-~g~l~~e~l~~L~~a 193 (289)
|++.++++.+.|.++|+++|+..+ ....+++.++++.+++.. +.+.. + .+...+|.+++|+++
T Consensus 78 I~~~~~~a~~~g~~~i~~~gg~~~----~~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeA 153 (348)
T PRK08445 78 IDKKIEELLAIGGTQILFQGGVHP----KLKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKEVLERLQAK 153 (348)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCC----CCCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 999999999999999999875422 246788899999888543 44432 1 122348999999999
Q ss_pred CCCeEe-cCCCch-HHHHhccCC-CCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeee-
Q 022946 194 GLTAYN-HNLDTS-REFYSKIIT-TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPI- 269 (289)
Q Consensus 194 G~~~v~-i~let~-~~~~~~i~~-~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i- 269 (289)
|++++. .++|++ +++++.+++ +.+.++|+++++.++++|+++++++|+|++||.+|+++++..+++++ +++.+|
T Consensus 154 Gl~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi~~~sg~i~G~~Et~edr~~~l~~lreLq--~~~~g~~ 231 (348)
T PRK08445 154 GLSSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLIGMKSTATMMFGTVENDEEIIEHWERIRDLQ--DETGGFR 231 (348)
T ss_pred CCCCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCeeeeEEEecCCCCHHHHHHHHHHHHHHH--HHhCCee
Confidence 999997 689999 999999976 56899999999999999999999999999999999999999999995 555444
Q ss_pred ----ccceecCCCCCCCC
Q 022946 270 ----NALLAVKGTPLQDQ 283 (289)
Q Consensus 270 ----~~~~p~pgTpl~~~ 283 (289)
+.|.| +||||+..
T Consensus 232 ~fi~~~~~p-~~tpl~~~ 248 (348)
T PRK08445 232 AFILWSFQP-DNTPLKEE 248 (348)
T ss_pred EEeccccCC-CCCccccc
Confidence 44445 99999864
|
|
| >PRK09234 fbiC FO synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-31 Score=254.03 Aligned_cols=246 Identities=18% Similarity=0.227 Sum_probs=200.8
Q ss_pred cchHHHHHHHHHhcCCCCCCCHHHHHHhhCC---ChHHHHHHHHHHHHhhhCCC-----eeEEe--EeeccccCCCCcCC
Q 022946 34 ASAAAIEAERTIREGPRHDWSKDDIKSIYDS---PVLDLLFHGAQVHRHAHNFR-----EVQQC--TLLSIKTGGCSEDC 103 (289)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~ls~ee~~~l~~~---~~~~l~~~a~~~~r~~~~g~-----~~~~~--~~i~~~t~~C~~~C 103 (289)
++.++.+.+++.. +..||.+|+..|++. ++.+|+..|..+ |++++|+ .|+++ .+|++ ||.|..+|
T Consensus 11 ~~~~~~~l~k~~~---g~~ls~eEa~~Ll~~~~~dl~~L~~~A~~v-R~~~~G~~~~~~~Vty~~n~~In~-Tn~C~~~C 85 (843)
T PRK09234 11 ASAMRRALRRARD---GVTLDVDEAAVLLTARGDDLADLCASAARV-RDAGLGAAGRPGVVTYSRKVFIPL-TRLCRDRC 85 (843)
T ss_pred HHHHHHHHHHHHc---CCCCCHHHHHHHhcCCCccHHHHHHHHHHH-HHHHcCCcccCceEEEEeEEEecC-CCCCCCCC
Confidence 4445666777777 999999999999842 344555555555 5555688 88765 57887 99999999
Q ss_pred CCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCC------------CchhHHHHHHHHHHHHh-
Q 022946 104 SYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG------------RKTNFNQILEYVKDIRD- 170 (289)
Q Consensus 104 ~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~g------------e~~~~~~l~e~i~~ik~- 170 (289)
.||+|+...+ . ..+..+++|||++.++.+.+.|++++.|++|..+... -...++++.++++.+++
T Consensus 86 ~YCaF~~~~~-~-~~~~~ls~eEIl~~a~~~~~~G~~e~l~t~G~~P~~~~~~~~~~l~~~gy~~~~ey~~~~~~~ik~~ 163 (843)
T PRK09234 86 HYCTFATVPG-K-LEAAYLSPDEVLDIARAGAAAGCKEALFTLGDRPEDRWPEAREWLDERGYDSTLDYVRAMAIRVLEE 163 (843)
T ss_pred CcCCCccCCC-C-CccccCCHHHHHHHHHHHHHCCCCEEEEecCCCCccccccccccccccccccHHHHHHHHHHHHHHh
Confidence 9999986433 2 3456699999999999999999999988876543210 01246899999999984
Q ss_pred cCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHh------ccCCCCCHHHHHHHHHHHHHcCCceeecEEeec
Q 022946 171 MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYS------KIITTRSYDERLETLKHVREAGINVCSGGIIGL 243 (289)
Q Consensus 171 ~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~------~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl 243 (289)
.++..+++.|.++.+.+..|+++|++ +.+++|+. ++.|. .+++++.+++++++++.++++|+++++++|+|+
T Consensus 164 ~gl~p~i~~G~ls~~E~~~Lk~~g~s-~gl~lEt~~~~l~~~~g~~h~~~P~K~~~~RL~ti~~A~~lGi~~tsG~L~Gi 242 (843)
T PRK09234 164 TGLLPHLNPGVMSWSELARLKPVAPS-MGMMLETTSRRLFEEKGGPHYGSPDKDPAVRLRVLEDAGRLSVPFTTGILIGI 242 (843)
T ss_pred cCCCceeeeCCCCHHHHHHHHHhcCc-CCCCHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHcCCCccceEEEEC
Confidence 68878889999999999999999997 68999997 87764 456778899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCC---CCCeeeeccceecCCCCCCCCCCCC
Q 022946 244 GEAEEDRVGLLHTLATLPT---HPESVPINALLAVKGTPLQDQKLKY 287 (289)
Q Consensus 244 get~ed~~~~l~~l~~l~~---~~~~v~i~~~~p~pgTpl~~~~~~~ 287 (289)
|||.+|+++++..|+++++ +++.+.+++|.|.|||||++.++++
T Consensus 243 GEt~edRve~L~~LR~Lq~~~g~~~evi~~~F~p~~gT~l~~~~~~s 289 (843)
T PRK09234 243 GETLAERAESLFAIRKLHREYGHIQEVIVQNFRAKPDTAMAGVPDAG 289 (843)
T ss_pred CCCHHHHHHHHHHHHHhhHhhCCCcEEeecccccCCCCCCCCCCCCC
Confidence 9999999999999999964 5788999999999999999887765
|
|
| >PRK09234 fbiC FO synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-30 Score=247.90 Aligned_cols=232 Identities=19% Similarity=0.260 Sum_probs=188.1
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHhhCC--ChHHHHHHHHHHHHhhhCCCeeEE--eEeeccccCCCCcCCCCCCCCCCCC
Q 022946 38 AIEAERTIREGPRHDWSKDDIKSIYDS--PVLDLLFHGAQVHRHAHNFREVQQ--CTLLSIKTGGCSEDCSYCPQSSRYD 113 (289)
Q Consensus 38 ~~~~~~~~~~~~~~~ls~ee~~~l~~~--~~~~l~~~a~~~~r~~~~g~~~~~--~~~i~~~t~~C~~~C~fC~~~~~~~ 113 (289)
..|.+++.. +.++|.+|++.|++. +.++.+..+++..|++++|+.|++ +..|++ ||.|+.+|.||+|++. +
T Consensus 475 ~~l~~~~~~---g~~ls~~eal~Ll~~~~~~l~~L~~~Ad~iR~~~~G~~Vt~vvn~~In~-TN~C~~~C~FCafs~~-~ 549 (843)
T PRK09234 475 AALRAAERD---PAGLTDDEALALFTADGPALEAVCRLADDLRRDVVGDDVTYVVNRNINF-TNICYTGCRFCAFAQR-K 549 (843)
T ss_pred HHHHHHHhc---CCCCCHHHHHHHHcCCchhHHHHHHHHHHHHHHhcCCeEEEEEeeceec-CCCCCCCCcccccccC-C
Confidence 344555555 899999999999963 344445555555566667999985 567888 9999999999999865 3
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--CceEEE-----------eCC
Q 022946 114 TGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCC-----------TLG 180 (289)
Q Consensus 114 ~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~i~~-----------~~g 180 (289)
.....|. +++|+|++.++++.+.|+++|+++||. ++ ....++++++++.+|+. ++.++. +.|
T Consensus 550 ~~~~~y~-Ls~eeI~~~a~ea~~~G~tev~i~gG~-~p---~~~~~~y~~lir~IK~~~p~i~i~afsp~Ei~~~a~~~G 624 (843)
T PRK09234 550 TDADAYT-LSLDEVADRAWEAWVAGATEVCMQGGI-HP---ELPGTGYADLVRAVKARVPSMHVHAFSPMEIVNGAARLG 624 (843)
T ss_pred CCCCccc-CCHHHHHHHHHHHHHCCCCEEEEecCC-CC---CcCHHHHHHHHHHHHHhCCCeeEEecChHHHHHHHHHcC
Confidence 3334444 899999999999999999999999753 33 13578899999999854 455532 357
Q ss_pred CCCHHHHHHHHHcCCCeEec-CCCch-HHHHhccCCCC-CHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHH
Q 022946 181 MLEKHQAIELKKAGLTAYNH-NLDTS-REFYSKIITTR-SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTL 257 (289)
Q Consensus 181 ~l~~e~l~~L~~aG~~~v~i-~let~-~~~~~~i~~~~-~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l 257 (289)
....|.+.+|+++|++++.. +-|.+ +++++.+++++ +.++|+++++.+++.|+++++++|+|++||.+|+++++.+|
T Consensus 625 l~~~e~l~~LkeAGLds~pgt~aeil~d~vr~~i~p~k~~~~~wle~i~~Ah~lGi~~~stmm~G~~Et~edrv~hl~~L 704 (843)
T PRK09234 625 LSIREWLTALREAGLDTIPGTAAEILDDEVRWVLTKGKLPTAEWIEVVTTAHEVGLRSSSTMMYGHVDTPRHWVAHLRVL 704 (843)
T ss_pred CCHHHHHHHHHHhCcCccCCCchhhCCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcccceEEcCCCCHHHHHHHHHHH
Confidence 88899999999999999987 55666 88888888854 78999999999999999999999999999999999999999
Q ss_pred hcCCCCCCeeeecccee----cCCCCCC
Q 022946 258 ATLPTHPESVPINALLA----VKGTPLQ 281 (289)
Q Consensus 258 ~~l~~~~~~v~i~~~~p----~pgTpl~ 281 (289)
+++| .+..+|..|+| .|+||++
T Consensus 705 reLq--~~tgGf~~fIPl~F~~~~tpl~ 730 (843)
T PRK09234 705 RDIQ--DRTGGFTEFVPLPFVHQNAPLY 730 (843)
T ss_pred HhcC--cccCCeeeeeeccccCCCCCcc
Confidence 9995 68888999999 7788885
|
|
| >PRK06267 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-29 Score=220.96 Aligned_cols=209 Identities=18% Similarity=0.232 Sum_probs=168.0
Q ss_pred hHHHHHHHHHHHHhhhCCCeeEEeEeeccccCCCC--cCCCCCCCCCCCCC-CCCCcCCCCHHHHHHHHHHHHHcCCcEE
Q 022946 66 VLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCS--EDCSYCPQSSRYDT-GVKGQKLMTKDAVMQAAQKAKEAGSTRF 142 (289)
Q Consensus 66 ~~~l~~~a~~~~r~~~~g~~~~~~~~i~~~t~~C~--~~C~fC~~~~~~~~-~~~~~~~~~~eei~~~~~~~~~~g~~~i 142 (289)
+.+|...|..+ |.+++|+++++++++++ |++|+ .+|.||+++...+. ....++.+++|+|+++++.+.+.|++.+
T Consensus 6 ~~~L~~~A~~i-r~~~fG~~v~l~~~l~~-S~~C~l~~~C~FC~~s~~~~~i~~~~~~~~s~eeI~eea~~~~~~Gv~~~ 83 (350)
T PRK06267 6 ILENSIKAFKL-TEKHHGNIVSLERALFL-GWYCNLKGPCKFCYMSTQKDKIKDPLKARRRVESILAEAILMKRIGWKLE 83 (350)
T ss_pred HHHHHHHHHHH-HHHHcCCeEEEEEeeee-cCCCcCCCCCcCCCCcccCCccCccccccCCHHHHHHHHHHHHHcCCCEE
Confidence 44555555555 55556999999999997 99999 89999999864321 1123455899999999999999999877
Q ss_pred EEecccCCCCCCchhHHHHHHHHHHHHhc-CceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHH
Q 022946 143 CMGAAWRDTIGRKTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDE 220 (289)
Q Consensus 143 ~i~~~~~~~~ge~~~~~~l~e~i~~ik~~-~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~ 220 (289)
.++||. . ...+++.++++.++.. +..++.+.|.++.+.+..++.+|+ .+++||. +++++.+++++++++
T Consensus 84 ~lsgG~-~-----~~~~el~~i~e~I~~~~~~~~~~s~G~~d~~~~~~~~l~Gv---~g~~ET~~~~~~~~i~~~~s~ed 154 (350)
T PRK06267 84 FISGGY-G-----YTTEEINDIAEMIAYIQGCKQYLNVGIIDFLNINLNEIEGV---VGAVETVNPKLHREICPGKPLDK 154 (350)
T ss_pred EEecCC-C-----CCHHHHHHHHHHHHHhhCCceEeecccCCHHHHhhccccCc---eeeeecCCHHHHHhhCCCCCHHH
Confidence 666543 2 2234455555555432 344667788888888777777775 5689999 999999999999999
Q ss_pred HHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCCCCC
Q 022946 221 RLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKLKY 287 (289)
Q Consensus 221 ~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~~~~ 287 (289)
++++++.++++|+.+++++|+|+||+.+|+.+++++++++ +++.+.++.|+|.||||+++.++++
T Consensus 155 ~~~~l~~ak~aGi~v~~g~IiGlgEt~ed~~~~l~~l~~l--~~d~v~~~~L~P~pGTp~~~~~~~s 219 (350)
T PRK06267 155 IKEMLLKAKDLGLKTGITIILGLGETEDDIEKLLNLIEEL--DLDRITFYSLNPQKGTIFENKPSVT 219 (350)
T ss_pred HHHHHHHHHHcCCeeeeeEEEeCCCCHHHHHHHHHHHHHc--CCCEEEEEeeeECCCCcCCCCCCCC
Confidence 9999999999999999999999999999999999999999 6899999999999999999987665
|
|
| >COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-28 Score=215.94 Aligned_cols=239 Identities=16% Similarity=0.195 Sum_probs=179.0
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHhhCCChH-HHHHHHHHHHHhhhCCCeeE--EeEeeccccCCCCcCCCCCCCCCCCC
Q 022946 37 AAIEAERTIREGPRHDWSKDDIKSIYDSPVL-DLLFHGAQVHRHAHNFREVQ--QCTLLSIKTGGCSEDCSYCPQSSRYD 113 (289)
Q Consensus 37 ~~~~~~~~~~~~~~~~ls~ee~~~l~~~~~~-~l~~~a~~~~r~~~~g~~~~--~~~~i~~~t~~C~~~C~fC~~~~~~~ 113 (289)
.+.+.+++.. +.+++.+|++.|++.... .+...|...++....++.++ ++..|++ ||.|..+|.||+|....
T Consensus 8 ~~~~~e~a~~---~~~l~~~d~~~Ll~~~~~~~l~~~A~~~r~~~~~~~~vtyv~n~~in~-TN~C~~~C~fCaF~~~~- 82 (370)
T COG1060 8 VDEIVEKALN---GERLTREDALALLSPADLEELEELADKARRRKRVGDGVTYVVNRNINY-TNICVNDCTFCAFYRKP- 82 (370)
T ss_pred HHHHHHHHhc---cCCCCHHHHHHHhccCcHHHHHHHHHHHHHhhccCCcEEEEEeecCCc-chhhcCCCCccccccCC-
Confidence 4556666666 999999999999986544 44455555543555566655 5678888 99999999999998644
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceE------------EEeC-C
Q 022946 114 TGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEV------------CCTL-G 180 (289)
Q Consensus 114 ~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i------------~~~~-g 180 (289)
+......+++|||.++++++.+.|+++++|+||..+. ..++++.++++.+|+....+ .... +
T Consensus 83 -~~~~~y~Ls~eeI~~~~~~~~~~G~~Evli~gG~~p~----~~~~y~~~~~~~ik~~~p~~~i~a~s~~ei~~~~~~~~ 157 (370)
T COG1060 83 -GDPKAYTLSPEEILEEVREAVKRGITEVLIVGGEHPE----LSLEYYEELFRTIKEEFPDLHIHALSAGEILFLAREGG 157 (370)
T ss_pred -CCccccccCHHHHHHHHHHHHHcCCeEEEEecCcCCC----cchHHHHHHHHHHHHhCcchhhcccCHHHhHHHHhccC
Confidence 2223455999999999999999999999999875432 24457777777777421111 1222 3
Q ss_pred CCCHHHHHHHHHcCCCeEecCCCch--HHHHhccCC-CCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHH
Q 022946 181 MLEKHQAIELKKAGLTAYNHNLDTS--REFYSKIIT-TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTL 257 (289)
Q Consensus 181 ~l~~e~l~~L~~aG~~~v~i~let~--~~~~~~i~~-~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l 257 (289)
....|.+++|+++|++.+..+-... +++.+.+++ +.+++.|++.++.++++||+.++++++|.+|+.+|+.+++..+
T Consensus 158 ~s~~E~l~~Lk~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~lGI~~tatml~Gh~E~~ed~~~hl~~i 237 (370)
T COG1060 158 LSYEEVLKRLKEAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHRLGIPTTATMLLGHVETREDRIDHLEHI 237 (370)
T ss_pred CCHHHHHHHHHHcCCCcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEEEecCCHHHHHHHHHHH
Confidence 4566679999999999999876665 556666665 4589999999999999999999999999999999999999999
Q ss_pred hcCCC---CCCeeeeccceecCCC-CCCCCCC
Q 022946 258 ATLPT---HPESVPINALLAVKGT-PLQDQKL 285 (289)
Q Consensus 258 ~~l~~---~~~~v~i~~~~p~pgT-pl~~~~~ 285 (289)
+++|+ +...+.+..|.|.+++ ++...++
T Consensus 238 r~lQ~~~gg~~~fI~~~f~p~~~~~~~~~~~~ 269 (370)
T COG1060 238 RDLQDETGGFQEFIPLRFRPENGPLPAEVVPE 269 (370)
T ss_pred HHHHHHhCCcEEEEcccccCCCCCccccCCCC
Confidence 99875 4455556666676666 5554443
|
|
| >TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-28 Score=216.19 Aligned_cols=197 Identities=20% Similarity=0.306 Sum_probs=159.0
Q ss_pred EeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCC------------Cc
Q 022946 88 QCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG------------RK 155 (289)
Q Consensus 88 ~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~g------------e~ 155 (289)
.+..|++ ||+|+.+|.||+++... +...++.+++|+|+++++.+.+.|++++++++|..+... -.
T Consensus 4 ~n~~i~~-tn~C~~~C~fCaf~~~~--g~~~~~~l~~eeI~~~a~~~~~~G~~ei~l~~G~~p~~~~~~~~~~l~~~~~~ 80 (322)
T TIGR03550 4 RNVFIPL-TRLCRNRCGYCTFRRPP--GELEAALLSPEEVLEILRKGAAAGCTEALFTFGEKPEERYPEAREWLAEMGYD 80 (322)
T ss_pred ceEEecc-ccCcCCCCccCCccccC--CCcccccCCHHHHHHHHHHHHHCCCCEEEEecCCCccccHHHHHHHHHhcCCc
Confidence 3456787 99999999999998643 333455699999999999999999999998875432211 00
Q ss_pred hhHHHHHHHHHHHHh-cCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhcc----CCCCCHHHHHHHHHHHH
Q 022946 156 TNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKI----ITTRSYDERLETLKHVR 229 (289)
Q Consensus 156 ~~~~~l~e~i~~ik~-~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i----~~~~~~~~~~~~i~~~~ 229 (289)
...+++.++++.+++ .++..+.+.|.++++.++.|+++|++ +.+++|++ +.+++.+ ++++++++++++++.++
T Consensus 81 ~~~~~~~~~~~~i~~e~~~~~~~~~g~lt~e~l~~Lk~aG~~-~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~~i~~a~ 159 (322)
T TIGR03550 81 STLEYLRELCELALEETGLLPHTNPGVMSRDELARLKPVNAS-MGLMLETTSERLCKGEAHYGSPGKDPAVRLETIEDAG 159 (322)
T ss_pred cHHHHHHHHHHHHHHhcCCccccCCCCCCHHHHHHHHhhCCC-CCcchhhhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 013677778887773 36666788899999999999999986 58899998 7755444 45567899999999999
Q ss_pred HcCCceeecEEeecCCCHHHHHHHHHHHhcCCC---CCCeeeeccceecCCCCCCCCCCCCC
Q 022946 230 EAGINVCSGGIIGLGEAEEDRVGLLHTLATLPT---HPESVPINALLAVKGTPLQDQKLKYG 288 (289)
Q Consensus 230 ~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~---~~~~v~i~~~~p~pgTpl~~~~~~~~ 288 (289)
+.|+++++++|+|+|||++|+.+++..+++++. ++..+.+++|.|.|||||++.++++.
T Consensus 160 ~~Gi~~~s~~i~G~gEt~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f~P~~gTpl~~~~~~s~ 221 (322)
T TIGR03550 160 RLKIPFTTGILIGIGETREERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSL 221 (322)
T ss_pred HcCCCccceeeEeCCCCHHHHHHHHHHHHHHHHHcCCCeEEecCccccCCCCCccCCCCCCH
Confidence 999999999999999999999999999999853 25678889999999999998776653
|
This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria. |
| >TIGR00423 radical SAM domain protein, CofH subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-28 Score=211.71 Aligned_cols=187 Identities=20% Similarity=0.341 Sum_probs=154.4
Q ss_pred EeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHH
Q 022946 88 QCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKD 167 (289)
Q Consensus 88 ~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ 167 (289)
.+..|++ |++|+.+|.||+++..+.. .+.+.+++|+|+++++.+.+.|+++|+|+|+.. +. ...+++.++++.
T Consensus 5 ~n~~i~~-T~~C~~~C~FC~~~~~~~~--~~~~~ls~eeI~~~~~~~~~~G~~~i~l~gg~~-~~---~~~~~~~~i~~~ 77 (309)
T TIGR00423 5 VNRNINF-TNICVGKCKFCAFRAREKD--KDAYVLSLEEILEKVKEAVAKGATEVCIQGGLN-PQ---LDIEYYEELFRA 77 (309)
T ss_pred ceeeecC-ccccccCCccCCCccCCCC--CCcccCCHHHHHHHHHHHHHCCCCEEEEecCCC-CC---CCHHHHHHHHHH
Confidence 4566787 9999999999999864432 233458999999999999999999999996542 21 346778888888
Q ss_pred HHhc--CceEE-----------EeCCCCCHHHHHHHHHcCCCeEe-cCCCch-HHHHhccCCCC-CHHHHHHHHHHHHHc
Q 022946 168 IRDM--GMEVC-----------CTLGMLEKHQAIELKKAGLTAYN-HNLDTS-REFYSKIITTR-SYDERLETLKHVREA 231 (289)
Q Consensus 168 ik~~--~~~i~-----------~~~g~l~~e~l~~L~~aG~~~v~-i~let~-~~~~~~i~~~~-~~~~~~~~i~~~~~~ 231 (289)
+++. .+.+. .+.|.++++.+++|++||++++. +++|+. +++++.+++++ +.++++++++.++++
T Consensus 78 Ik~~~~~i~~~~~s~~e~~~~~~~~g~~~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~ 157 (309)
T TIGR00423 78 IKQEFPDVHIHAFSPMEVYFLAKNEGLSIEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRL 157 (309)
T ss_pred HHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHc
Confidence 8854 34432 13566789999999999999997 599999 99999998755 899999999999999
Q ss_pred CCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceec----CCCC-CCCC
Q 022946 232 GINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAV----KGTP-LQDQ 283 (289)
Q Consensus 232 Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~----pgTp-l~~~ 283 (289)
|+++++++|+|++||.+|+.+++..++++ +++..+|..|+|. ++|| |+..
T Consensus 158 Gi~~~s~~iiG~~Et~ed~~~~l~~lr~l--~~~~~~f~~fiP~~f~~~~t~~l~~~ 212 (309)
T TIGR00423 158 GIPTTATMMFGHVENPEHRVEHLLRIRKI--QEKTGGFTEFIPLPFQPENNPYLEGE 212 (309)
T ss_pred CCCceeeEEecCCCCHHHHHHHHHHHHhh--chhhCCeeeEEeeeecCCCChhhccC
Confidence 99999999999999999999999999999 4688888888884 5888 7654
|
This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family. |
| >PRK05481 lipoyl synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.2e-26 Score=196.22 Aligned_cols=209 Identities=19% Similarity=0.296 Sum_probs=164.7
Q ss_pred CCHHHHHHhhCC-ChHHHHHHHHHHHHh-hhCCCeeEEeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHH
Q 022946 53 WSKDDIKSIYDS-PVLDLLFHGAQVHRH-AHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQA 130 (289)
Q Consensus 53 ls~ee~~~l~~~-~~~~l~~~a~~~~r~-~~~g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~ 130 (289)
-+..|++.|+.. ++..+...|...++. .+.++.+++ +.+ |+||+.+|.||.++... .+.+++++|+++
T Consensus 19 ~~~~~~~~l~~~~~l~~~~~~a~~~~~~~~~~~~~~~f---i~i-s~GC~~~C~FC~i~~~r------~~s~~~eeI~~e 88 (289)
T PRK05481 19 EEYTEIKKLLRELGLHTVCEEASCPNIGECWSRGTATF---MIL-GDICTRRCPFCDVATGR------PLPLDPDEPERV 88 (289)
T ss_pred hhHHHHHHHHHhCChHHHHHhhCCCcchhccCCCeEEE---EEe-cccccCCCCCceeCCCC------CCCCCHHHHHHH
Confidence 356788888875 455666666555441 445666543 345 99999999999988521 133799999999
Q ss_pred HHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--Cce--EEEeCCCCCHHHHHHHHHcCCCeEecCCCchH
Q 022946 131 AQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTSR 206 (289)
Q Consensus 131 ~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~--i~~~~g~l~~e~l~~L~~aG~~~v~i~let~~ 206 (289)
++.+.+.|+++|+|+|+..+... ....+.+.++++.+++. ++. +.........+.+..|+++|.+.+.+.+|+.+
T Consensus 89 a~~l~~~G~kEI~L~gg~~~d~~-~~~~~~l~~Ll~~I~~~~p~irI~~l~~~~~~~~e~L~~l~~ag~~i~~~~~ets~ 167 (289)
T PRK05481 89 AEAVARMGLKYVVITSVDRDDLP-DGGAQHFAETIRAIRELNPGTTIEVLIPDFRGRMDALLTVLDARPDVFNHNLETVP 167 (289)
T ss_pred HHHHHHCCCCEEEEEEeeCCCcc-cccHHHHHHHHHHHHhhCCCcEEEEEccCCCCCHHHHHHHHhcCcceeeccccChH
Confidence 99999999999999987543211 11235677777777742 333 33333334568899999999999999999998
Q ss_pred HHHhccCCCCCHHHHHHHHHHHHHc--CCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeecccee
Q 022946 207 EFYSKIITTRSYDERLETLKHVREA--GINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 274 (289)
Q Consensus 207 ~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p 274 (289)
++++.++++.+++++++.++.+++. |+.+++++|+|+|||++|+.+++++++++ +++.+.++.|.|
T Consensus 168 ~vlk~m~r~~t~e~~le~i~~ar~~~pgi~~~t~~IvGfGET~ed~~~tl~~lrel--~~d~v~if~Ys~ 235 (289)
T PRK05481 168 RLYKRVRPGADYERSLELLKRAKELHPGIPTKSGLMVGLGETDEEVLEVMDDLRAA--GVDILTIGQYLQ 235 (289)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHhCCCCeEeeeeEEECCCCHHHHHHHHHHHHhc--CCCEEEEEccCC
Confidence 8999999999999999999999999 99999999999999999999999999999 689999999999
|
|
| >PRK06245 cofG FO synthase subunit 1; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.9e-26 Score=201.28 Aligned_cols=198 Identities=22% Similarity=0.360 Sum_probs=155.4
Q ss_pred CCeeEE--eEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchh---
Q 022946 83 FREVQQ--CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTN--- 157 (289)
Q Consensus 83 g~~~~~--~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~--- 157 (289)
|+.+++ +..+++ ||+|+.+|.||+++...+ ....+++|+|+++++.+.+.|+++++|+||..+... ...
T Consensus 5 ~~~vt~~~~~~i~~-Tn~C~~~C~fC~~~~~~~----~~~~ls~eei~~~~~~~~~~G~~ei~l~gG~~p~~~-~~~~~~ 78 (336)
T PRK06245 5 SKIVTYSRNVFIPL-TYECRNRCGYCTFRRDPG----QPSLLSPEEVKEILRRGADAGCTEALFTFGEVPDES-YERIKE 78 (336)
T ss_pred CCeeEeecceeeec-cccccCCCccCCCcCCCC----ccCcCCHHHHHHHHHHHHHCCCCEEEEecCCCCccc-hhhhhh
Confidence 666665 467788 999999999999875322 223689999999999999999999999886542221 001
Q ss_pred ------HHHHHHHHHHHH----hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhcc---CCCCCHHHHHH
Q 022946 158 ------FNQILEYVKDIR----DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKI---ITTRSYDERLE 223 (289)
Q Consensus 158 ------~~~l~e~i~~ik----~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i---~~~~~~~~~~~ 223 (289)
+..+.+.++.+. +.++...++.+.++++.++.|+++|+. +.+++|++ +.+++.+ +++++++++++
T Consensus 79 ~~~~~g~~~~~~~i~~i~~~~~~~g~~~~~~~~~lt~e~i~~Lk~ag~~-l~~~~et~~e~l~~~v~~~~~~~~~~~~l~ 157 (336)
T PRK06245 79 QLAEMGYSSILEYLYDLCELALEEGLLPHTNAGILTREEMEKLKEVNAS-MGLMLEQTSPRLLNTVHRGSPGKDPELRLE 157 (336)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhcCCCccccCCCCCHHHHHHHHHhCCC-CCCCccccchhhHHhhccCCCCCCHHHHHH
Confidence 234455554433 334555677889999999999999864 57788998 7787544 56778999999
Q ss_pred HHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCC---CCCeeeeccceecCCCCCCCCCCCC
Q 022946 224 TLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPT---HPESVPINALLAVKGTPLQDQKLKY 287 (289)
Q Consensus 224 ~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~---~~~~v~i~~~~p~pgTpl~~~~~~~ 287 (289)
+++.+++.|+.+++++|+|+|||.+|+.+++..+++++. ++..+.+++|+|.||||+...+.++
T Consensus 158 ~i~~a~~~Gi~~~~~~i~G~gEt~ed~~~~l~~l~~l~~~~gg~~~~~~~~f~P~~~T~~~~~~~~s 224 (336)
T PRK06245 158 TIENAGKLKIPFTTGILIGIGETWEDRAESLEAIAELHERYGHIQEVIIQNFSPKPGIPMENHPEPS 224 (336)
T ss_pred HHHHHHHcCCceeeeeeeECCCCHHHHHHHHHHHHHHHHhhCCCcEEecCCCcCCCCCCcccCCCcC
Confidence 999999999999999999999999999999999998853 3578899999999999997765543
|
|
| >PRK12928 lipoyl synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=194.25 Aligned_cols=216 Identities=18% Similarity=0.290 Sum_probs=168.0
Q ss_pred HHHHHHhhCC-ChHHHHHHHHHHHHhhhC-CCeeEEeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHH
Q 022946 55 KDDIKSIYDS-PVLDLLFHGAQVHRHAHN-FREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQ 132 (289)
Q Consensus 55 ~ee~~~l~~~-~~~~l~~~a~~~~r~~~~-g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~ 132 (289)
..++..|+.. ++..+...|.......+. ++.+++ +.+ |++|+.+|.||.++.. . ...++++++++.++
T Consensus 28 ~~~~~~l~~~~~l~tv~~~A~~~~~~~~~~~~~~tf---v~i-s~gC~~~C~FCa~~~g-----~-~~~~~~eei~~~a~ 97 (290)
T PRK12928 28 LETVQRLVKQRRLHTICEEARCPNRGECYAQGTATF---LIM-GSICTRRCAFCQVDKG-----R-PMPLDPDEPERVAE 97 (290)
T ss_pred HHHHHHHHHcCCHHHHHHHhCCCcccccCCCCEEEE---EEe-cccccCcCCCCCccCC-----C-CCCCCHHHHHHHHH
Confidence 5667778865 566777777666555433 555544 344 9999999999999851 1 23479999999999
Q ss_pred HHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--CceEEE-eCCCC--CHHHHHHHHHcCCCeEecCCCchHH
Q 022946 133 KAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCC-TLGML--EKHQAIELKKAGLTAYNHNLDTSRE 207 (289)
Q Consensus 133 ~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~i~~-~~g~l--~~e~l~~L~~aG~~~v~i~let~~~ 207 (289)
.+.+.|+++++|+|+..+... +...+.+.++++.+++. .+.+.. +...+ ..+.+..|+++|.+.+.+++|+.++
T Consensus 98 ~~~~~G~keivitg~~~dDl~-d~g~~~~~ell~~Ik~~~p~~~I~~ltp~~~~~~~e~L~~l~~Ag~~i~~hnlEt~~~ 176 (290)
T PRK12928 98 AVAALGLRYVVLTSVARDDLP-DGGAAHFVATIAAIRARNPGTGIEVLTPDFWGGQRERLATVLAAKPDVFNHNLETVPR 176 (290)
T ss_pred HHHHCCCCEEEEEEEeCCccc-ccCHHHHHHHHHHHHhcCCCCEEEEeccccccCCHHHHHHHHHcCchhhcccCcCcHH
Confidence 999999999999886543321 12345677777777743 233322 33333 5788999999999999999998899
Q ss_pred HHhccCCCCCHHHHHHHHHHHHHcC--CceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeecccee--cCCCCCCCC
Q 022946 208 FYSKIITTRSYDERLETLKHVREAG--INVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA--VKGTPLQDQ 283 (289)
Q Consensus 208 ~~~~i~~~~~~~~~~~~i~~~~~~G--i~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p--~pgTpl~~~ 283 (289)
+++.++++.+++++++.++.+++.| +.+++++|+|+|||.+|+.+++++++++ +++.++++.|.+ ..+.|....
T Consensus 177 vl~~m~r~~t~e~~le~l~~ak~~gp~i~~~s~iIvG~GET~ed~~etl~~Lrel--~~d~v~i~~Yl~p~~~~~~v~~~ 254 (290)
T PRK12928 177 LQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLMLGLGETEDEVIETLRDLRAV--GCDRLTIGQYLRPSLAHLPVQRY 254 (290)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHhCCCceecccEEEeCCCCHHHHHHHHHHHHhc--CCCEEEEEcCCCCCccCCceeec
Confidence 9999999999999999999999999 9999999999999999999999999999 689999999876 455665554
|
|
| >TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=207.67 Aligned_cols=184 Identities=17% Similarity=0.277 Sum_probs=150.9
Q ss_pred eeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc--CCcEEEEecccCCCCCCchhHHHHHHHHHHH
Q 022946 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA--GSTRFCMGAAWRDTIGRKTNFNQILEYVKDI 168 (289)
Q Consensus 91 ~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~--g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~i 168 (289)
.+.. ++|||++|.||..+.... ...++.+++|.|+++++.+.+. |++.|.|.++. +.. ..+++.++++.+
T Consensus 199 ~i~t-sRGCp~~C~FC~~~~~~~--g~~~r~rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~--f~~---~~~~~~~l~~~l 270 (472)
T TIGR03471 199 SLYT-GRGCPSKCTFCLWPQTVG--GHRYRTRSAESVIEEVKYALENFPEVREFFFDDDT--FTD---DKPRAEEIARKL 270 (472)
T ss_pred EEEe-cCCCCCCCCCCCCCccCC--CCceEeCCHHHHHHHHHHHHHhcCCCcEEEEeCCC--CCC---CHHHHHHHHHHH
Confidence 3555 999999999998764221 1345567999999999988764 78888886532 222 234566666666
Q ss_pred HhcCceEEEe-CCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec-CC
Q 022946 169 RDMGMEVCCT-LGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GE 245 (289)
Q Consensus 169 k~~~~~i~~~-~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-ge 245 (289)
++.++.+.+. ...++++.++.|+++|+.++.+|+||. +++++.++++.+.+++.++++.++++|+.+..++|+|+ ||
T Consensus 271 ~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPge 350 (472)
T TIGR03471 271 GPLGVTWSCNARANVDYETLKVMKENGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGE 350 (472)
T ss_pred hhcCceEEEEecCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCC
Confidence 6556654332 234799999999999999999999999 99999999999999999999999999999999999999 99
Q ss_pred CHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCC
Q 022946 246 AEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284 (289)
Q Consensus 246 t~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~ 284 (289)
|.+++.++++++.++ +++.+.++.+.|+|||||++..
T Consensus 351 t~e~~~~ti~~~~~l--~~~~~~~~~l~P~PGT~l~~~~ 387 (472)
T TIGR03471 351 TRETIRKTIDFAKEL--NPHTIQVSLAAPYPGTELYDQA 387 (472)
T ss_pred CHHHHHHHHHHHHhc--CCCceeeeecccCCCcHHHHHH
Confidence 999999999999999 6889999999999999998643
|
One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift. |
| >TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-25 Score=203.92 Aligned_cols=191 Identities=16% Similarity=0.254 Sum_probs=155.1
Q ss_pred EeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCch-hHHHHHHHHHHH
Q 022946 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT-NFNQILEYVKDI 168 (289)
Q Consensus 90 ~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~-~~~~l~e~i~~i 168 (289)
..|.+ ++|||++|+||..+..++ +.+.+++++|+++++.+.+.|+++|.|.+.....++.+. ...++.++++.+
T Consensus 140 ~~i~i-srGCp~~CsfC~~~~~~g----~~r~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l 214 (414)
T TIGR01579 140 AFIKV-QDGCNFFCSYCIIPFARG----RSRSVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQI 214 (414)
T ss_pred EEEEe-ccCcCCCCCCCceeeecC----CCccCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHH
Confidence 45777 999999999998864322 345579999999999999999999999875443333221 113455666655
Q ss_pred Hhc-Cce-EE---EeCCCCCHHHHHHHHHcC--CCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHH--cCCceeec
Q 022946 169 RDM-GME-VC---CTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVRE--AGINVCSG 238 (289)
Q Consensus 169 k~~-~~~-i~---~~~g~l~~e~l~~L~~aG--~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~--~Gi~v~~~ 238 (289)
.+. ++. +. .....++++.++.|+++| +..+.+|+||+ +++++.++++.+.+++.++++.+++ .|+.+.++
T Consensus 215 ~~~~~~~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~~gi~i~~~ 294 (414)
T TIGR01579 215 LQIPGIKRIRLSSIDPEDIDEELLEAIASEKRLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVRPDYAFGTD 294 (414)
T ss_pred hcCCCCcEEEEeCCChhhCCHHHHHHHHhcCccCCCeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeeeee
Confidence 533 322 22 223457999999999987 78999999999 9999999999999999999999999 89999999
Q ss_pred EEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCC-CCC
Q 022946 239 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-LKY 287 (289)
Q Consensus 239 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~-~~~ 287 (289)
+|+|+ |||++++.++++++.++ +++.+.++.|.|.||||++..+ +++
T Consensus 295 ~IvG~PgET~ed~~~tl~~i~~~--~~~~~~~~~~sp~pGT~~~~~~~~v~ 343 (414)
T TIGR01579 295 IIVGFPGESEEDFQETLRMVKEI--EFSHLHIFPYSARPGTPASTMKDKVP 343 (414)
T ss_pred EEEECCCCCHHHHHHHHHHHHhC--CCCEEEeeecCCCCCCchhhCCCCCC
Confidence 99999 99999999999999999 6899999999999999999975 444
|
This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium. |
| >PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.1e-25 Score=200.96 Aligned_cols=187 Identities=14% Similarity=0.218 Sum_probs=153.8
Q ss_pred eEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHH
Q 022946 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDI 168 (289)
Q Consensus 89 ~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~i 168 (289)
..++.+ ++|||++|+||..+... .+.+.+++++|+++++.+.+.|+++|.|.|.+.+.++.+.....+.++++.+
T Consensus 150 ~a~l~i-srGC~~~CsFC~ip~~r----G~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~~~~l~~Ll~~l 224 (445)
T PRK14340 150 SAFVPV-MRGCNNMCAFCVVPFTR----GRERSHPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEAGADFAGLLDAV 224 (445)
T ss_pred EEEEEe-ccCCCCCCCCCCccccc----CCCcCCCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCCCchHHHHHHHH
Confidence 356777 99999999999987432 2345579999999999999999999999876544444332223455666655
Q ss_pred Hhc--CceE--EE-eCCCCCHHHHHHHHHc--CCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHc--CCceeec
Q 022946 169 RDM--GMEV--CC-TLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCSG 238 (289)
Q Consensus 169 k~~--~~~i--~~-~~g~l~~e~l~~L~~a--G~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~~ 238 (289)
.+. ...+ .+ ++..++++.++.|+++ |+..+.+++||+ +++++.++++.+.+++.++++.+++. |+.+.++
T Consensus 225 ~~~~~~~rir~~~~~p~~l~~ell~~~~~~~~g~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~pgi~i~td 304 (445)
T PRK14340 225 SRAAPEMRIRFTTSHPKDISESLVRTIAARPNICNHIHLPVQSGSSRMLRRMNRGHTIEEYLEKIALIRSAIPGVTLSTD 304 (445)
T ss_pred hhcCCCcEEEEccCChhhcCHHHHHHHHhCCCCCCeEEECCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEecc
Confidence 432 2233 22 2445789999999996 799999999999 99999999999999999999999998 9999999
Q ss_pred EEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 239 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 239 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
+|+|+ |||++|+.++++++.++ +++.+.++.|.|.||||++.
T Consensus 305 ~IvGfPgET~edf~~tl~~~~~~--~~~~~~~f~~sp~pGT~~~~ 347 (445)
T PRK14340 305 LIAGFCGETEEDHRATLSLMEEV--RFDSAFMFYYSVRPGTLAAR 347 (445)
T ss_pred EEEECCCCCHHHHHHHHHHHHhc--CCCEEeeEEecCCCCChhhh
Confidence 99999 99999999999999999 68999999999999999985
|
|
| >TIGR00510 lipA lipoate synthase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=187.75 Aligned_cols=187 Identities=18% Similarity=0.244 Sum_probs=151.6
Q ss_pred eeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh
Q 022946 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD 170 (289)
Q Consensus 91 ~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~ 170 (289)
++.+ +++|+.+|.||.++...+ +.. .+++++.++++.+.+.|+++++|+|++.+... +.....+.++++.+++
T Consensus 66 fm~i-~~gC~~~C~FC~v~~~rg----~~~-~~~eei~~~a~~~~~~GlkevvLTsv~~ddl~-d~g~~~l~~li~~I~~ 138 (302)
T TIGR00510 66 FMIL-GDICTRRCPFCDVAHGRN----PLP-PDPEEPAKLAETIKDMGLKYVVITSVDRDDLE-DGGASHLAECIEAIRE 138 (302)
T ss_pred EEec-CcCcCCCCCcCCccCCCC----CCC-CCHHHHHHHHHHHHHCCCCEEEEEeecCCCcc-cccHHHHHHHHHHHHh
Confidence 3445 999999999999974221 112 47899999999999999999999987654331 1234678888888875
Q ss_pred c--Cce--EEEeCCCCCHHHHHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHc--CCceeecEEeecC
Q 022946 171 M--GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREA--GINVCSGGIIGLG 244 (289)
Q Consensus 171 ~--~~~--i~~~~g~l~~e~l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~~~i~Glg 244 (289)
. ++. +.+....-+.+.++.|+++|++.+.+++||.+++++.++++++++++++.++.+++. |+.+++++|+|+|
T Consensus 139 ~~p~i~Ievl~~d~~g~~e~l~~l~~aG~dv~~hnlEt~~~l~~~vrr~~t~e~~Le~l~~ak~~~pgi~~~TgiIVGlG 218 (302)
T TIGR00510 139 KLPNIKIETLVPDFRGNIAALDILLDAPPDVYNHNLETVERLTPFVRPGATYRWSLKLLERAKEYLPNLPTKSGIMVGLG 218 (302)
T ss_pred cCCCCEEEEeCCcccCCHHHHHHHHHcCchhhcccccchHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCeecceEEEECC
Confidence 3 333 333221226788999999999999999999988999999999999999999999998 8999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCeeeeccc-ee-cCCCCCCCCCCC
Q 022946 245 EAEEDRVGLLHTLATLPTHPESVPINAL-LA-VKGTPLQDQKLK 286 (289)
Q Consensus 245 et~ed~~~~l~~l~~l~~~~~~v~i~~~-~p-~pgTpl~~~~~~ 286 (289)
||++|+.+++++|+++ +++.+.+..| .| .+++|+.....+
T Consensus 219 ETeee~~etl~~Lrel--g~d~v~igqYl~p~~~~~~v~~~~~p 260 (302)
T TIGR00510 219 ETNEEIKQTLKDLRDH--GVTMVTLGQYLRPSRRHLPVKRYVSP 260 (302)
T ss_pred CCHHHHHHHHHHHHhc--CCCEEEeecccCCCCCCCccccCCCH
Confidence 9999999999999999 6899999887 46 678998887654
|
The family shows strong sequence conservation. |
| >PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.5e-25 Score=201.08 Aligned_cols=189 Identities=16% Similarity=0.241 Sum_probs=153.1
Q ss_pred eEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHH
Q 022946 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDI 168 (289)
Q Consensus 89 ~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~i 168 (289)
..++.+ ++|||++|+||..+... .+++..++++|+++++.+.+.|+++|.|.|.....+|.+..-..+.++++.+
T Consensus 147 ~a~v~i-~rGC~~~CsFC~~p~~~----g~~rsr~~e~V~~Ei~~l~~~g~~eI~l~d~~~~~y~~~~~~~~~~~Ll~~l 221 (437)
T PRK14331 147 CAYVTV-MRGCDKKCTYCVVPKTR----GKERSRRLGSILDEVQWLVDDGVKEIHLIGQNVTAYGKDIGDVPFSELLYAV 221 (437)
T ss_pred EEEEEe-ccCcCCCCccCCcccCC----CCcccCCHHHHHHHHHHHHHCCCeEEEEeeeccccccCCCCCCCHHHHHHHH
Confidence 356777 99999999999987432 2345579999999999999999999999875544333221112345555554
Q ss_pred Hhc-C---ceEEE-eCCCCCHHHHHHHHHc--CCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHc--CCceeec
Q 022946 169 RDM-G---MEVCC-TLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCSG 238 (289)
Q Consensus 169 k~~-~---~~i~~-~~g~l~~e~l~~L~~a--G~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~~ 238 (289)
.+. + +.+.. +...++++.++.|+++ |+..+.+++||+ +++++.++++.+.+++.++++.+++. |+.+.++
T Consensus 222 ~~~~g~~~i~~~~~~p~~l~~ell~~~~~~~~~~~~l~igiqSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~~gi~i~~d 301 (437)
T PRK14331 222 AEIDGVERIRFTTGHPRDLDEDIIKAMADIPQVCEHLHLPFQAGSDRILKLMDRGYTKEEYLEKIELLKEYIPDITFSTD 301 (437)
T ss_pred hcCCCccEEEEeccCcccCCHHHHHHHHcCCccCCceecccccCChHHHHHcCCCCCHHHHHHHHHHHHHhCCCCEEecC
Confidence 422 2 33322 2345899999999998 599999999999 99999999999999999999999998 9999999
Q ss_pred EEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCC
Q 022946 239 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284 (289)
Q Consensus 239 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~ 284 (289)
+|+|+ |||++|+.++++++.++ +++.+.++.|.|.||||+++.+
T Consensus 302 ~IvG~PgET~ed~~~tl~~l~~l--~~~~i~~f~~sp~pGT~~~~~~ 346 (437)
T PRK14331 302 IIVGFPTETEEDFEETLDVLKKV--EFEQVFSFKYSPRPGTPAAYME 346 (437)
T ss_pred EEEECCCCCHHHHHHHHHHHHhc--CcceeeeeEecCCCCcchhhCC
Confidence 99999 99999999999999999 6889999999999999999875
|
|
| >PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=200.66 Aligned_cols=190 Identities=15% Similarity=0.247 Sum_probs=155.6
Q ss_pred EeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchh--HHHHHHHH
Q 022946 88 QCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTN--FNQILEYV 165 (289)
Q Consensus 88 ~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~--~~~l~e~i 165 (289)
..+.+++ +.|||+.|+||..+... .+.+..++|+|+++++.+.+.|+++|.|.|...+.+|.+.. ...+.+++
T Consensus 212 ~~a~v~I-~~GC~~~CsFC~vp~~r----G~~Rsr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll 286 (509)
T PRK14327 212 IKAWVNI-MYGCDKFCTYCIVPYTR----GKERSRRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLM 286 (509)
T ss_pred eEEEEEe-cCCCCCCCcCCcccccC----CCCeeCCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHH
Confidence 4567888 99999999999987432 23445799999999999999999999998866555553211 12355566
Q ss_pred HHHHhcCc---eEEE-eCCCCCHHHHHHHHHcC--CCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHc--CCcee
Q 022946 166 KDIRDMGM---EVCC-TLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVC 236 (289)
Q Consensus 166 ~~ik~~~~---~i~~-~~g~l~~e~l~~L~~aG--~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~ 236 (289)
+.+.+.++ .+.+ ++..++++.++.|+++| +..+.+++||+ +++++.++++++.+++++.++.+++. |+.++
T Consensus 287 ~~I~~~~i~~ir~~s~~P~~i~deli~~m~~~g~~~~~l~lgvQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~p~i~i~ 366 (509)
T PRK14327 287 DEIRKIDIPRVRFTTSHPRDFDDHLIEVLAKGGNLVEHIHLPVQSGSTEVLKIMARKYTRESYLELVRKIKEAIPNVALT 366 (509)
T ss_pred HHHHhCCCceEEEeecCcccCCHHHHHHHHhcCCccceEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCcEEe
Confidence 66554343 3322 34568999999999999 67999999999 99999999999999999999999997 67788
Q ss_pred ecEEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCC
Q 022946 237 SGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284 (289)
Q Consensus 237 ~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~ 284 (289)
+++|+|+ |||.+|+.++++++.++ +++.+.++.|.|.||||++..+
T Consensus 367 tdiIvGfPgET~edf~~Tl~~v~~l--~~d~~~~f~ysprpGT~a~~~~ 413 (509)
T PRK14327 367 TDIIVGFPNETDEQFEETLSLYREV--GFDHAYTFIYSPREGTPAAKMK 413 (509)
T ss_pred eeEEEeCCCCCHHHHHHHHHHHHHc--CCCeEEEeeeeCCCCCchHhCc
Confidence 8999999 99999999999999999 6899999999999999998754
|
|
| >TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.6e-25 Score=204.77 Aligned_cols=180 Identities=13% Similarity=0.156 Sum_probs=148.4
Q ss_pred eccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHH-HcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh
Q 022946 92 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAK-EAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD 170 (289)
Q Consensus 92 i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~-~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~ 170 (289)
++. |+|||++|+||+.+..+ .+++..+++.|+++++.+. ++|+..|.|.+.. +.. ..+++.++++.+.+
T Consensus 197 i~t-SRGCp~~C~FC~~~~~~----~~~R~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~--f~~---~~~~~~~l~~~l~~ 266 (497)
T TIGR02026 197 PNF-ARGCPFTCNFCSQWKFW----RRYRHRDPKKFVDEIEWLVRTHGVGFFILADEE--PTI---NRKKFQEFCEEIIA 266 (497)
T ss_pred eec-cCCCCCCCCCCCCCCCC----ceeecCCHHHHHHHHHHHHHHcCCCEEEEEecc--ccc---CHHHHHHHHHHHHh
Confidence 555 99999999999987432 3456679999999999886 4899988887632 222 23455666666553
Q ss_pred c---CceEEEe--CCC--CCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEee
Q 022946 171 M---GMEVCCT--LGM--LEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIG 242 (289)
Q Consensus 171 ~---~~~i~~~--~g~--l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~G 242 (289)
. ++.+.++ ... .+++.++.|+++|+.+|.+|+||. +++++.++++.+.++..++++.++++|+.+..++|+|
T Consensus 267 ~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G 346 (497)
T TIGR02026 267 RNPISVTWGINTRVTDIVRDADILHLYRRAGLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITG 346 (497)
T ss_pred cCCCCeEEEEecccccccCCHHHHHHHHHhCCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEE
Confidence 3 3443332 222 378999999999999999999999 9999999999999999999999999999999999999
Q ss_pred c-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCC
Q 022946 243 L-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ 283 (289)
Q Consensus 243 l-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~ 283 (289)
+ |||.+++.++++++.++ +++.+.++.+.|+|||||++.
T Consensus 347 ~P~et~e~~~~t~~~~~~l--~~~~~~~~~~tP~PGT~l~~~ 386 (497)
T TIGR02026 347 FENETDETFEETYRQLLDW--DPDQANWLMYTPWPFTSLFGE 386 (497)
T ss_pred CCCCCHHHHHHHHHHHHHc--CCCceEEEEecCCCCcHHHHH
Confidence 9 99999999999999999 689999999999999999864
|
This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase. |
| >TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125 | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-24 Score=198.47 Aligned_cols=188 Identities=15% Similarity=0.236 Sum_probs=152.7
Q ss_pred EeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCch-hHHHHHHHHHHH
Q 022946 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT-NFNQILEYVKDI 168 (289)
Q Consensus 90 ~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~-~~~~l~e~i~~i 168 (289)
..|.+ ++|||++|+||..+..++ +++.+++++|+++++.+.+.|+++|.|.+.+...+|.+. ...++.++++.+
T Consensus 137 ~~i~~-srGC~~~CsfC~~~~~~G----~~r~r~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i 211 (430)
T TIGR01125 137 AYLKV-AEGCNRRCAFCIIPSIRG----KLRSRPIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLYRESKLVDLLEEL 211 (430)
T ss_pred EEEEE-ccCCCCCCCcCCeecccC----CceecCHHHHHHHHHHHHHCCCcEEEEEeECCCccccCCCCcccHHHHHHHH
Confidence 34777 999999999999875332 345579999999999999999999998874443344321 123456666666
Q ss_pred HhcC-ceE----EEeCCCCCHHHHHHHHHcC--CCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHc--CCceeec
Q 022946 169 RDMG-MEV----CCTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCSG 238 (289)
Q Consensus 169 k~~~-~~i----~~~~g~l~~e~l~~L~~aG--~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~~ 238 (289)
.+.+ +.. ...+..++++.++.|+++| +..+.+++||. +++++.++++.+.+++.++++.++++ |+.+.++
T Consensus 212 ~~~~~i~~~r~~~~~p~~~~~ell~~~~~~~~~~~~l~iglES~s~~vLk~m~k~~~~~~~~~~i~~l~~~~~~i~i~~~ 291 (430)
T TIGR01125 212 GKVGGIYWIRMHYLYPDELTDDVIDLMAEGPKVLPYLDIPLQHASDRILKLMRRPGSGEQQLDFIERLREKCPDAVLRTT 291 (430)
T ss_pred HhcCCccEEEEccCCcccCCHHHHHHHhhCCcccCceEeCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHhCCCCeEeEE
Confidence 5443 332 1224558999999999995 78999999999 99999999999999999999999998 5668899
Q ss_pred EEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCC
Q 022946 239 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284 (289)
Q Consensus 239 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~ 284 (289)
+|+|+ |||.+++.++++++.++ +++.+.++.|.|.||||++..+
T Consensus 292 ~I~G~PgET~e~~~~t~~fl~~~--~~~~~~~~~~sp~pGT~~~~~~ 336 (430)
T TIGR01125 292 FIVGFPGETEEDFQELLDFVEEG--QFDRLGAFTYSPEEGTDAFALP 336 (430)
T ss_pred EEEECCCCCHHHHHHHHHHHHhc--CCCEEeeeeccCCCCCccccCC
Confidence 99999 99999999999999999 6899999999999999998865
|
This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes. |
| >PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-24 Score=199.06 Aligned_cols=189 Identities=16% Similarity=0.269 Sum_probs=157.1
Q ss_pred eEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCch-hHHHHHHHHHH
Q 022946 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT-NFNQILEYVKD 167 (289)
Q Consensus 89 ~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~-~~~~l~e~i~~ 167 (289)
..++.+ ++|||++|+||..+...+ +.+.+++++|+++++.+.+.|+++|.|.|...+.+|.+. ....+.++++.
T Consensus 156 ~~~i~I-~rGC~~~CsfC~~p~~~G----~~rsr~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~ 230 (459)
T PRK14338 156 TVHVPI-IYGCNMSCSYCVIPLRRG----RERSRPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEA 230 (459)
T ss_pred EEEEEc-ccCCCCCCCcCCeeccCC----CCccCCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHH
Confidence 356777 999999999999874322 335579999999999999999999999886555555542 23457777777
Q ss_pred HHhc-C---ceEEE-eCCCCCHHHHHHHHHc--CCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHc--CCceee
Q 022946 168 IRDM-G---MEVCC-TLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCS 237 (289)
Q Consensus 168 ik~~-~---~~i~~-~~g~l~~e~l~~L~~a--G~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~ 237 (289)
+.+. + +.+.+ +...++++.++.|+++ |+..+.+++||. +++++.++++++.++++++++.+++. |+.+.+
T Consensus 231 l~~~~gi~~ir~~~~~p~~i~~ell~~l~~~~~~~~~v~lglQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~i~~ 310 (459)
T PRK14338 231 VHEIPGLERLRFLTSHPAWMTDRLIHAVARLPKCCPHINLPVQAGDDEVLKRMRRGYTVARYRELIARIREAIPDVSLTT 310 (459)
T ss_pred HHhcCCcceEEEEecChhhcCHHHHHHHhcccccccceecCcccCCHHHHHhccCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 6643 3 33333 3456899999999995 589999999999 99999999999999999999999997 788999
Q ss_pred cEEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCC
Q 022946 238 GGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284 (289)
Q Consensus 238 ~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~ 284 (289)
++|+|+ |||.+|+.++++++.++ +++.+.++.|.|.||||++..+
T Consensus 311 d~IvG~PgET~ed~~~ti~~l~~l--~~~~v~i~~ysp~pGT~~~~~~ 356 (459)
T PRK14338 311 DIIVGHPGETEEQFQRTYDLLEEI--RFDKVHIAAYSPRPGTLAAEME 356 (459)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHc--CCCEeEEEecCCCCCChhhhCc
Confidence 999999 99999999999999999 6899999999999999998764
|
|
| >PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-24 Score=199.59 Aligned_cols=191 Identities=14% Similarity=0.192 Sum_probs=152.9
Q ss_pred EeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCc---hhHHHHHHHHH
Q 022946 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK---TNFNQILEYVK 166 (289)
Q Consensus 90 ~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~---~~~~~l~e~i~ 166 (289)
..+.+ ++|||++|+||..+...+ +.+..++++|+++++.+.+.|+++|.|.+...+.++.. .....+.++++
T Consensus 149 ~~i~i-srGCp~~CsFC~~p~~~G----~~~sr~~e~Iv~Ei~~l~~~g~~ei~l~d~~~~~y~~~~~~~~~~~l~~Ll~ 223 (444)
T PRK14325 149 AFVSI-MEGCDKYCTFCVVPYTRG----EEVSRPVDDVLAEVAQLAEQGVREITLLGQNVNAYRGEGPDGEIADFAELLR 223 (444)
T ss_pred EEEEh-hhCCCCCCCccccCcccC----CcccCCHHHHHHHHHHHHHCCCcEEEEEeeccccccCCCCCCCcchHHHHHH
Confidence 45666 899999999999874322 22347999999999999999999999987554333111 01124555555
Q ss_pred HHHhc-C---ceEEE-eCCCCCHHHHHHHHHcC--CCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHc--CCcee
Q 022946 167 DIRDM-G---MEVCC-TLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVC 236 (289)
Q Consensus 167 ~ik~~-~---~~i~~-~~g~l~~e~l~~L~~aG--~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~ 236 (289)
.+.+. + +.+.. ++..++++.++.|+++| +.++.+++||. +++++.++++.+.+++.++++.++++ |+.+.
T Consensus 224 ~l~~~~~~~~ir~~~~~p~~~~~ell~~l~~~~~~~~~l~igiqSgs~~vLk~m~R~~~~~~~~~~i~~lr~~~~gi~v~ 303 (444)
T PRK14325 224 LVAAIDGIERIRYTTSHPRDFTDDLIEAYADLPKLVPFLHLPVQSGSDRILKAMNRGHTALEYKSIIRKLRAARPDIAIS 303 (444)
T ss_pred HHHhcCCccEEEEccCCcccCCHHHHHHHHcCCcccCceeccCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 55432 2 33322 34458999999999985 89999999999 99999999999999999999999997 78899
Q ss_pred ecEEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCC-CCC
Q 022946 237 SGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-LKY 287 (289)
Q Consensus 237 ~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~-~~~ 287 (289)
+++|+|+ |||.+++.++++++.++ +++.+.++.|.|.||||++..+ +++
T Consensus 304 ~~~IvG~PgET~ed~~~tl~~i~~~--~~~~~~~~~~sp~pGT~~~~~~~~v~ 354 (444)
T PRK14325 304 SDFIVGFPGETDEDFEATMKLIEDV--GFDQSFSFIYSPRPGTPAADLPDDVP 354 (444)
T ss_pred eeEEEECCCCCHHHHHHHHHHHHhc--CCCeeeeeeccCCCCCchhhCCCCCC
Confidence 9999999 99999999999999999 6899999999999999999976 444
|
|
| >PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-24 Score=196.82 Aligned_cols=192 Identities=15% Similarity=0.223 Sum_probs=154.0
Q ss_pred eEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCch----hHHHHHHH
Q 022946 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT----NFNQILEY 164 (289)
Q Consensus 89 ~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~----~~~~l~e~ 164 (289)
.++|.+ ++|||++|.||..+..++ +.+..++|+|+++++.+.+.|+++|.|.|...+.+|.+. ....+.++
T Consensus 128 ~a~i~i-srGC~~~CsFC~ip~~rG----~~~sr~~e~I~~Ei~~l~~~G~keI~l~~~~~~~yg~d~~~~~~~~~l~~L 202 (420)
T PRK14339 128 KSLVNI-SIGCDKKCTYCIVPHTRG----KEISIPMDLILKEAEKAVNNGAKEIFLLGQNVNNYGKRFSSEHEKVDFSDL 202 (420)
T ss_pred EEEEEe-cCCCCCCCCcCCcccccC----CCCCCCHHHHHHHHHHHHHCCCcEEEEeeeccccccCCCcCCcccccHHHH
Confidence 467888 999999999999875332 222369999999999999999999999885544444321 11235566
Q ss_pred HHHHHhc-Cc---eEE-EeCCCCCHHHHHHHHHc--CCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHc--CCc
Q 022946 165 VKDIRDM-GM---EVC-CTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GIN 234 (289)
Q Consensus 165 i~~ik~~-~~---~i~-~~~g~l~~e~l~~L~~a--G~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~ 234 (289)
++.+.+. ++ .+. .++..++++.++.|+++ |+..+.+++||. +++++.++++.+.++++++++.+++. |+.
T Consensus 203 l~~l~~~~g~~~ir~~s~~p~~~~~ell~~~~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~~~~~~~v~~lr~~~p~i~ 282 (420)
T PRK14339 203 LDKLSEIEGLERIRFTSPHPLHMDDKFLEEFAKNPKICKSIHMPLQSGSSEILKAMKRGYTKEWFLNRAEKLRALVPEVS 282 (420)
T ss_pred HHHHhcCCCccEEEECCCChhhcCHHHHHHHHcCCCccCceEeCCccCCHHHHHhccCCCCHHHHHHHHHHHHHHCCCCE
Confidence 6555432 33 322 22334789999999998 689999999999 99999999999999999999999997 788
Q ss_pred eeecEEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCC-CCC
Q 022946 235 VCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-LKY 287 (289)
Q Consensus 235 v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~-~~~ 287 (289)
+.+++|+|+ |||++|+.++++++.++ +++.+.++.|.|.||||+++.+ +++
T Consensus 283 i~~d~IvGfPgETeedf~~Tl~fl~~l--~~~~~~~f~~sp~pGT~a~~~~~~v~ 335 (420)
T PRK14339 283 ISTDIIVGFPGESDKDFEDTMDVLEKV--RFEQIFSFKYSPRPLTEAAAWKNQVD 335 (420)
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHhc--CCCEEeeEecCCCCCCchhhCCCCCC
Confidence 999999999 99999999999999999 6788999999999999998865 444
|
|
| >PTZ00413 lipoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=183.68 Aligned_cols=174 Identities=21% Similarity=0.342 Sum_probs=149.7
Q ss_pred ccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--C
Q 022946 95 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--G 172 (289)
Q Consensus 95 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~ 172 (289)
+++.|+.+|.||+++... . ...++++|+.+.++.+.+.|++.+++++++.+.. .+...+.+.+.++.+++. +
T Consensus 155 lG~~CTr~C~FCaqstg~----~-p~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL-~D~ga~~~a~~I~~Ir~~~p~ 228 (398)
T PTZ00413 155 MGDHCTRGCRFCSVKTSR----K-PPPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDL-PDGGASHVARCVELIKESNPE 228 (398)
T ss_pred cCCCCCCCCCCCCCCCCC----C-CCCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCC-ChhhHHHHHHHHHHHHccCCC
Confidence 489999999999997422 1 2447999999999999999999888877765432 234678999999999853 6
Q ss_pred ceEEEeCCCC--CHHHHHHHHHcCCCeEecCCCchHHHHhccCC-CCCHHHHHHHHHHHHHc---CCceeecEEeecCCC
Q 022946 173 MEVCCTLGML--EKHQAIELKKAGLTAYNHNLDTSREFYSKIIT-TRSYDERLETLKHVREA---GINVCSGGIIGLGEA 246 (289)
Q Consensus 173 ~~i~~~~g~l--~~e~l~~L~~aG~~~v~i~let~~~~~~~i~~-~~~~~~~~~~i~~~~~~---Gi~v~~~~i~Glget 246 (289)
+.+++..|.+ +.+.++.|+++|++.+++++||.++.|..++. .++|++.+++|+.+++. |+.+++++|+|+|||
T Consensus 229 ~~IevligDf~g~~e~l~~L~eAG~dvynHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGET 308 (398)
T PTZ00413 229 LLLEALVGDFHGDLKSVEKLANSPLSVYAHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGET 308 (398)
T ss_pred CeEEEcCCccccCHHHHHHHHhcCCCEEecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCCC
Confidence 7788887865 89999999999999999999999999999995 68999999999999987 999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCeeeeccc-eecC
Q 022946 247 EEDRVGLLHTLATLPTHPESVPINAL-LAVK 276 (289)
Q Consensus 247 ~ed~~~~l~~l~~l~~~~~~v~i~~~-~p~p 276 (289)
++|+.+++..|+++ +++.++|..| .|.+
T Consensus 309 ~eEvie~m~dLrel--GVDivtIGQYL~Ps~ 337 (398)
T PTZ00413 309 EEEVRQTLRDLRTA--GVSAVTLGQYLQPTK 337 (398)
T ss_pred HHHHHHHHHHHHHc--CCcEEeeccccCCCc
Confidence 99999999999999 6999999555 5543
|
|
| >TIGR00089 RNA modification enzyme, MiaB family | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-24 Score=198.51 Aligned_cols=188 Identities=14% Similarity=0.275 Sum_probs=153.7
Q ss_pred EeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchh-HHHHHHHHHHH
Q 022946 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTN-FNQILEYVKDI 168 (289)
Q Consensus 90 ~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~-~~~l~e~i~~i 168 (289)
.++.+ ++|||++|.||..+..++ +.+..++++|+++++.+.+.|+++|.|.+.+...+|.+.. ...+.++++.+
T Consensus 141 ~~i~~-srGC~~~CsfC~~~~~~g----~~r~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l 215 (429)
T TIGR00089 141 AFLKI-QEGCDKFCTYCIVPYARG----RERSRPPEDILEEVKELVSKGVKEIVLLGQNVGAYGKDLKGETNLADLLREL 215 (429)
T ss_pred EEEEH-HhCcCCCCCcCceecccC----CCCCCCHHHHHHHHHHHHHCCCceEEEEeeccccccCCCCCCcCHHHHHHHH
Confidence 45666 999999999999875332 4455799999999999999999999998754433333211 12456666666
Q ss_pred Hhc-Cce-EEE---eCCCCCHHHHHHHHHcC--CCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcC--Cceeec
Q 022946 169 RDM-GME-VCC---TLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAG--INVCSG 238 (289)
Q Consensus 169 k~~-~~~-i~~---~~g~l~~e~l~~L~~aG--~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~G--i~v~~~ 238 (289)
++. ++. +.. +...++++.++.|+++| +.++.+++||. +++++.++++++.+++.++++.+++.| +.+.++
T Consensus 216 ~~~~g~~~i~~~~~~p~~i~~ell~~m~~~~~~~~~l~igiES~s~~vLk~m~R~~~~~~~~~~i~~lr~~~~~i~i~~~ 295 (429)
T TIGR00089 216 SKIDGIERIRFGSSHPDDVTDDLIELIAENPKVCKHLHLPVQSGSDRILKRMNRKYTREEYLDIVEKIRAKIPDAAITTD 295 (429)
T ss_pred hcCCCCCEEEECCCChhhcCHHHHHHHHhCCCccCceeeccccCChHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEEEee
Confidence 543 332 221 23457899999999995 99999999999 999999999999999999999999998 789999
Q ss_pred EEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCC
Q 022946 239 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284 (289)
Q Consensus 239 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~ 284 (289)
+|+|+ |||.+++.++++++.++ +++.+.++.|.|.||||++..+
T Consensus 296 ~IvG~PgET~ed~~~tl~~i~~~--~~~~~~~~~~sp~pgT~~~~~~ 340 (429)
T TIGR00089 296 IIVGFPGETEEDFEETLDLVEEV--KFDKLHSFIYSPRPGTPAADMK 340 (429)
T ss_pred EEEECCCCCHHHHHHHHHHHHhc--CCCEeeccccCCCCCCchhhCC
Confidence 99999 99999999999999999 6899999999999999999875
|
This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related. |
| >TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-24 Score=196.01 Aligned_cols=192 Identities=15% Similarity=0.276 Sum_probs=151.9
Q ss_pred eEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCc--hhHHHHHHHHH
Q 022946 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK--TNFNQILEYVK 166 (289)
Q Consensus 89 ~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~--~~~~~l~e~i~ 166 (289)
...|.+ ++|||++|+||..+... .+.+.+++|+|+++++.+.+.|+++|+|.|.+...+|.+ ..+..+++.+.
T Consensus 134 ~~~i~i-srGC~~~CsfC~ip~~~----G~~rsr~~e~Vl~Ei~~l~~~G~~ei~l~g~d~~~yg~d~~~~l~~Ll~~l~ 208 (420)
T TIGR01578 134 IEIIPI-NQGCLGNCSYCITKHAR----GKLASYPPEKIVEKARQLVAEGCKEIWITSQDTGAYGRDIGSRLPELLRLIT 208 (420)
T ss_pred EEEEEE-ccCCCCCCCCCccccCC----CCcccCCHHHHHHHHHHHHHCCCeEEEEEeeccccccCCCCcCHHHHHHHHH
Confidence 356787 99999999999987432 234557999999999999999999999987554434432 23455555554
Q ss_pred HHHh-cCceEEE-eCC---CCCHHHHHHHHHcC-CCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHc--CCceee
Q 022946 167 DIRD-MGMEVCC-TLG---MLEKHQAIELKKAG-LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCS 237 (289)
Q Consensus 167 ~ik~-~~~~i~~-~~g---~l~~e~l~~L~~aG-~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~ 237 (289)
.++. ..+.+.. ++. .++++.++.++..+ +..+.+++||. +++++.++++.+.+++.++++.+++. |+.+.+
T Consensus 209 ~i~~~~~ir~~~~~p~~~~~~~~~l~~~~~~~~~~~~l~iglQSgsd~iL~~m~R~~~~~~~~~~i~~i~~~~~~i~i~~ 288 (420)
T TIGR01578 209 EIPGEFRLRVGMMNPKNVLEILDELANVYQHEKVYKFLHLPVQSGSDSVLKEMKREYTVSDFEDIVDKFRERFPDLTLST 288 (420)
T ss_pred hCCCCcEEEEcCCCCCcccccCHHHHHHHhcccccCceEeCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEe
Confidence 4432 1223221 121 24677777777554 68899999999 99999999999999999999999998 888999
Q ss_pred cEEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCCCCC
Q 022946 238 GGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKLKY 287 (289)
Q Consensus 238 ~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~~~~ 287 (289)
++|+|+ |||.+|+.++++++.++ +++.+.++.|.|.||||++..++++
T Consensus 289 ~~IvG~PgET~ed~~~t~~~~~~~--~~~~i~~~~~~p~pGT~~~~~~~v~ 337 (420)
T TIGR01578 289 DIIVGFPTETDDDFEETMELLRKY--RPEKINITKFSPRPGTPAAKMKRIP 337 (420)
T ss_pred eEEEeCCCCCHHHHHHHHHHHHHh--CCCEEEEEEeeCCCCCcccCCCCCC
Confidence 999999 99999999999999999 6899999999999999999877654
|
This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model. |
| >PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-24 Score=198.78 Aligned_cols=188 Identities=16% Similarity=0.227 Sum_probs=153.0
Q ss_pred EeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCc-hhHHHHHHHHHHH
Q 022946 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-TNFNQILEYVKDI 168 (289)
Q Consensus 90 ~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~-~~~~~l~e~i~~i 168 (289)
..|.+ ++|||++|+||..+..++ +.+.+++|+|+++++.+.+.|+++|.|.|...+.+|.+ .....+.++++.+
T Consensus 159 a~v~i-srGCp~~CsFC~ip~~rG----~~rsr~~e~Vv~Ei~~l~~~g~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~l 233 (502)
T PRK14326 159 AWVSI-SVGCNNTCTFCIVPSLRG----KEKDRRPGDILAEVQALVDEGVLEVTLLGQNVNAYGVSFGDRGAFSKLLRAC 233 (502)
T ss_pred EEEEE-ccCCCCCCccCceeccCC----CcccCCHHHHHHHHHHHHHCCCceEEEEeecccccccCCCCHHHHHHHHHHH
Confidence 56777 999999999999875432 23446999999999999999999999987654444432 1223455555554
Q ss_pred Hhc-C---ceEE-EeCCCCCHHHHHHHHHcC--CCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHc--CCceeec
Q 022946 169 RDM-G---MEVC-CTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCSG 238 (289)
Q Consensus 169 k~~-~---~~i~-~~~g~l~~e~l~~L~~aG--~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~~ 238 (289)
... + +.+. .+...++++.++.|+++| +..+.+++||. +++++.++++++.+++.++++.+++. |+.+.++
T Consensus 234 ~~i~~l~~ir~~~~~p~~~~~ell~~m~~~g~~~~~l~lglQSgsd~iLk~m~R~~t~~~~~~~v~~lr~~~~~i~i~~~ 313 (502)
T PRK14326 234 GEIDGLERVRFTSPHPAEFTDDVIEAMAETPNVCPQLHMPLQSGSDRVLRAMRRSYRSERFLGILEKVRAAMPDAAITTD 313 (502)
T ss_pred HhcCCccEEEEeccChhhCCHHHHHHHHhcCCcCCcEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 422 2 3332 223457999999999997 89999999999 99999999999999999999999996 7889999
Q ss_pred EEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCC
Q 022946 239 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284 (289)
Q Consensus 239 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~ 284 (289)
+|+|+ |||.+|+.++++++.++ +++.+.++.|.|.||||+++.+
T Consensus 314 ~IvGfPgET~edf~~Tl~~i~~~--~~~~~~~f~~sp~pGT~~~~~~ 358 (502)
T PRK14326 314 IIVGFPGETEEDFQATLDVVREA--RFSSAFTFQYSKRPGTPAAEME 358 (502)
T ss_pred EEEECCCCCHHHHHHHHHHHHHc--CCCEEEEEeecCCCCChHHhCc
Confidence 99999 99999999999999999 5888999999999999999865
|
|
| >PLN02428 lipoic acid synthase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=184.79 Aligned_cols=175 Identities=19% Similarity=0.341 Sum_probs=142.5
Q ss_pred EeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH
Q 022946 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169 (289)
Q Consensus 90 ~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik 169 (289)
+++.+ +++|+.+|.||+++... .+.+ ..++++.+.++.+.+.|+++++|++++.+.. .+...+.+.++++.++
T Consensus 104 T~mil-g~gCtr~CrFCav~~~~----~p~~-~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl-~D~ga~~~~elir~Ir 176 (349)
T PLN02428 104 TIMIL-GDTCTRGCRFCAVKTSR----TPPP-PDPDEPENVAEAIASWGVDYVVLTSVDRDDL-PDGGSGHFAETVRRLK 176 (349)
T ss_pred EEEEe-cCCCCCCCCCCcCCCCC----CCCC-CChhhHHHHHHHHHHcCCCEEEEEEcCCCCC-CcccHHHHHHHHHHHH
Confidence 34444 99999999999997422 1222 5678888888888899999999988754332 2346678888888888
Q ss_pred hcC--ceEEE-eCC-CCCHHHHHHHHHcCCCeEecCCCchHHHHhccC-CCCCHHHHHHHHHHHHHc--CCceeecEEee
Q 022946 170 DMG--MEVCC-TLG-MLEKHQAIELKKAGLTAYNHNLDTSREFYSKII-TTRSYDERLETLKHVREA--GINVCSGGIIG 242 (289)
Q Consensus 170 ~~~--~~i~~-~~g-~l~~e~l~~L~~aG~~~v~i~let~~~~~~~i~-~~~~~~~~~~~i~~~~~~--Gi~v~~~~i~G 242 (289)
+.. +.+.. +.+ ..+++.++.|+++|++.+.+++|+.+++++.++ ++.+++++++.++.+++. |+.+.+++|+|
T Consensus 177 ~~~P~i~Ie~L~pdf~~d~elL~~L~eAG~d~i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvG 256 (349)
T PLN02428 177 QLKPEILVEALVPDFRGDLGAVETVATSGLDVFAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLG 256 (349)
T ss_pred HhCCCcEEEEeCccccCCHHHHHHHHHcCCCEEccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEe
Confidence 543 33333 233 348999999999999999999998888999999 678999999999999998 99999999999
Q ss_pred cCCCHHHHHHHHHHHhcCCCCCCeeeeccce
Q 022946 243 LGEAEEDRVGLLHTLATLPTHPESVPINALL 273 (289)
Q Consensus 243 lget~ed~~~~l~~l~~l~~~~~~v~i~~~~ 273 (289)
+|||++|+.+++++|+++ +++.+.|..|+
T Consensus 257 LGET~Edv~e~l~~Lrel--gvd~vtigqyL 285 (349)
T PLN02428 257 LGETDEEVVQTMEDLRAA--GVDVVTFGQYL 285 (349)
T ss_pred cCCCHHHHHHHHHHHHHc--CCCEEeecccc
Confidence 999999999999999999 68999987664
|
|
| >PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.7e-24 Score=196.18 Aligned_cols=191 Identities=15% Similarity=0.196 Sum_probs=153.1
Q ss_pred EeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCch---hHHHHHHHHH
Q 022946 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT---NFNQILEYVK 166 (289)
Q Consensus 90 ~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~---~~~~l~e~i~ 166 (289)
.++.+ ++|||++|+||..+...+ +.+.+++++|+++++.+.+.|+++|.|.|...+.++... ....+.++++
T Consensus 154 ~~i~I-~rGC~~~CsfC~~p~~rG----~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~g~~~~~y~~~~~~~~~~~~~~Ll~ 228 (455)
T PRK14335 154 SFIPI-MNGCNNFCSYCIVPYVRG----REISRDLDAILQEIDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLLR 228 (455)
T ss_pred EEEEh-hcCCCCCCCCCCcccCCC----CCccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccccCCccCHHHHHH
Confidence 55677 899999999999874332 233469999999999999999999999875443332111 1123445554
Q ss_pred HHH----h-cCceE----EEeCCCCCHHHHHHHHH--cCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHc--C
Q 022946 167 DIR----D-MGMEV----CCTLGMLEKHQAIELKK--AGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--G 232 (289)
Q Consensus 167 ~ik----~-~~~~i----~~~~g~l~~e~l~~L~~--aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~--G 232 (289)
.+. . .++.. ...+..++++.++.|++ +|+..+.+++||+ +++++.++++.+.+++.++++.+++. |
T Consensus 229 ~l~~~~~~~~~i~~ir~~s~~p~~i~~ell~~m~~~~~gc~~l~iglQSgsd~vLk~m~R~~t~e~~~~~v~~ir~~~pg 308 (455)
T PRK14335 229 HIVRRAEVTDQIRWIRFMSSHPKDLSDDLIATIAQESRLCRLVHLPVQHGSNGVLKRMNRSYTREHYLSLVGKLKASIPN 308 (455)
T ss_pred HHHHhhcccCCceEEEEeecCcccCCHHHHHHHHhCCCCCCeEEEccCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCCC
Confidence 442 1 23332 12355689999999998 4899999999999 99999999999999999999999998 9
Q ss_pred CceeecEEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCC-CCC
Q 022946 233 INVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-LKY 287 (289)
Q Consensus 233 i~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~-~~~ 287 (289)
+.+.+++|+|+ |||.+++.++++++.++ +++.+.++.|.|.||||+++.+ +++
T Consensus 309 i~i~~d~IvGfPgET~edf~~Tl~~i~~l--~~~~~~~~~~sp~pGT~~~~~~~~v~ 363 (455)
T PRK14335 309 VALSTDILIGFPGETEEDFEQTLDLMREV--EFDSAFMYHYNPREGTPAYDFPDRIP 363 (455)
T ss_pred CEEEEEEEEeCCCCCHHHHHHHHHHHHhc--CCCeEEEEEecCCCCCchhhCCCCCC
Confidence 99999999999 99999999999999999 6899999999999999999875 344
|
|
| >PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.2e-24 Score=195.34 Aligned_cols=186 Identities=15% Similarity=0.242 Sum_probs=148.5
Q ss_pred EeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCch-hHHHHHHHHHHH
Q 022946 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT-NFNQILEYVKDI 168 (289)
Q Consensus 90 ~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~-~~~~l~e~i~~i 168 (289)
.++.+ ++|||++|.||..+...+ +.+..++++|+++++.+.+.|+++|+|.|...+.+|.+. ....+.++++.+
T Consensus 142 ~~v~i-~rGC~~~CsFC~ip~~~G----~~rsr~~e~Iv~Ei~~l~~~g~kei~l~~~n~~~yg~~~~~~~~l~~Ll~~~ 216 (434)
T PRK14330 142 AWVTI-IYGCNRFCTYCIVPYTRG----REKSRPMEDILEEVEKLAKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEA 216 (434)
T ss_pred EEEEc-ccCCCCCCCCCceECcCC----CCccCCHHHHHHHHHHHHHCCCcEEEEEEecccccccCCCCCccHHHHHHHH
Confidence 45777 899999999999874322 235579999999999999999999999775433333211 112344444443
Q ss_pred Hhc-Cce-E-EE--eCCCCCHHHHHHHHHcC--CCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHc--CCceeec
Q 022946 169 RDM-GME-V-CC--TLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCSG 238 (289)
Q Consensus 169 k~~-~~~-i-~~--~~g~l~~e~l~~L~~aG--~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~~ 238 (289)
.+. ++. + .. .+..++++.++.|+++| +.++.+++||. +++++.++++.+.+++.++++.+++. |+.+.++
T Consensus 217 ~~~~~~~~~~~~~~~p~~~~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i~i~~d 296 (434)
T PRK14330 217 SKIEGIERIWFLTSYPTDFSDELIEVIANSPKVAKSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKVPDASISSD 296 (434)
T ss_pred HhcCCceEEEEecCChhhcCHHHHHHHhcCCcccCceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 321 222 1 11 23457899999999988 78999999999 99999999999999999999999996 7889999
Q ss_pred EEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 239 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 239 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
+|+|+ |||.+++.++++++.++ +++.+.++.|.|.||||+++
T Consensus 297 ~IvGfPgET~edf~~tl~fi~~~--~~~~~~~~~~sp~pGT~~~~ 339 (434)
T PRK14330 297 IIVGFPTETEEDFMETVDLVEKA--QFERLNLAIYSPREGTVAWK 339 (434)
T ss_pred EEEECCCCCHHHHHHHHHHHHhc--CCCEEeeeeccCCCCChhhh
Confidence 99999 99999999999999999 68999999999999999988
|
|
| >PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.3e-24 Score=195.95 Aligned_cols=189 Identities=14% Similarity=0.245 Sum_probs=151.6
Q ss_pred eEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchh-HHHHHHHHHH
Q 022946 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTN-FNQILEYVKD 167 (289)
Q Consensus 89 ~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~-~~~l~e~i~~ 167 (289)
..++.+ ++|||++|.||..+...+ +.+..++++|+++++.+.+.|+++|.|.|.....+|.+.. ...+.++++.
T Consensus 148 ~~~i~i-~rGC~~~CsfC~~p~~~g----~~Rsr~~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~ 222 (439)
T PRK14328 148 KAFVTI-MYGCNNFCTYCIVPYVRG----RERSRKPEDIIAEIKELVSEGYKEVTLLGQNVNSYGKDLEEKIDFADLLRR 222 (439)
T ss_pred EEEEEH-HhCcCCCCCCCCcccccC----CcccCCHHHHHHHHHHHHHCCCcEEEEeccccCcCCcCCCCCcCHHHHHHH
Confidence 356787 999999999999874332 2344699999999999999999999998865444442110 0124444444
Q ss_pred HHhc-C---ceEE-EeCCCCCHHHHHHHHHcC--CCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHc--CCceee
Q 022946 168 IRDM-G---MEVC-CTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCS 237 (289)
Q Consensus 168 ik~~-~---~~i~-~~~g~l~~e~l~~L~~aG--~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~ 237 (289)
+.+. + +.+. .++..++++.++.|+++| +.++.+++||+ +++++.++++++.++++++++.+++. |+.+.+
T Consensus 223 l~~~~~~~~ir~~~~~P~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i~i~~ 302 (439)
T PRK14328 223 VNEIDGLERIRFMTSHPKDLSDDLIEAIADCDKVCEHIHLPVQSGSNRILKKMNRHYTREYYLELVEKIKSNIPDVAITT 302 (439)
T ss_pred HHhcCCCcEEEEecCChhhcCHHHHHHHHhCCCcCceeeeCCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 4322 2 3332 234558999999999986 89999999999 99999999999999999999999997 677889
Q ss_pred cEEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCC
Q 022946 238 GGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284 (289)
Q Consensus 238 ~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~ 284 (289)
++|+|+ |||.+|+.++++++.++ +++.+.++.|.|.||||++..+
T Consensus 303 d~IvG~PgET~ed~~~tl~~i~~l--~~~~~~~~~~sp~pGT~~~~~~ 348 (439)
T PRK14328 303 DIIVGFPGETEEDFEETLDLVKEV--RYDSAFTFIYSKRKGTPAAKME 348 (439)
T ss_pred EEEEECCCCCHHHHHHHHHHHHhc--CCCcccceEecCCCCChhhhCC
Confidence 999999 99999999999999999 6889999999999999999764
|
|
| >PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.5e-24 Score=196.27 Aligned_cols=186 Identities=11% Similarity=0.132 Sum_probs=149.5
Q ss_pred EeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCc--h----hHHHHHH
Q 022946 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK--T----NFNQILE 163 (289)
Q Consensus 90 ~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~--~----~~~~l~e 163 (289)
..+.+ ++|||++|+||..+... .+++..++++|+++++.+.+.|+++|.|.|...+.++-. . ....+.+
T Consensus 170 a~i~i-srGCp~~CsFC~ip~~~----G~~rsrs~e~Vv~Ei~~l~~~g~~eI~l~~~~~~~y~~d~~~~~~~~~~~l~~ 244 (467)
T PRK14329 170 AFVSI-MRGCDNMCTFCVVPFTR----GRERSRDPESILNEVRDLFAKGYKEVTLLGQNVDSYLWYGGGLKKDEAVNFAQ 244 (467)
T ss_pred EEEEe-ccCcccCCCCCcccccc----CCcccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccCCccccccccHHH
Confidence 46777 99999999999987432 234557999999999999999999999977442222211 0 1124555
Q ss_pred HHHHHHhc----CceEEE-eCCCCCHHHHHHHHHc--CCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHc--CC
Q 022946 164 YVKDIRDM----GMEVCC-TLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GI 233 (289)
Q Consensus 164 ~i~~ik~~----~~~i~~-~~g~l~~e~l~~L~~a--G~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi 233 (289)
+++.+.+. .+.+.+ +...++++.++.|+++ |+..+.+++||+ +++++.++++.+.+++.++++.+++. ++
T Consensus 245 Ll~~l~~~~~~~~ir~~~~~p~~l~~ell~~m~~~~~g~~~i~iglQSgsd~vLk~m~R~~t~~~~~~~i~~ir~~~~~~ 324 (467)
T PRK14329 245 LLEMVAEAVPDMRIRFSTSHPKDMTDDVLEVMAKYDNICKHIHLPVQSGSDRILKLMNRKYTREWYLDRIDAIRRIIPDC 324 (467)
T ss_pred HHHHHHhcCCCcEEEEecCCcccCCHHHHHHHHhCCCCCCeEEeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC
Confidence 55555422 333332 2445889999999997 899999999999 99999999999999999999999996 56
Q ss_pred ceeecEEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 234 NVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 234 ~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
.+.+++|+|+ |||.+|+.++++++.++ +++.+.++.|.|.||||++.
T Consensus 325 ~i~~d~IvGfPgET~edf~~tl~~i~~l--~~~~~~v~~~sp~pGT~~~~ 372 (467)
T PRK14329 325 GISTDMIAGFPTETEEDHQDTLSLMEEV--GYDFAFMFKYSERPGTYAAR 372 (467)
T ss_pred EEEEeEEEeCCCCCHHHHHHHHHHHHhh--CCCeEeeeEecCCCCChhhh
Confidence 7889999999 99999999999999999 68999999999999999985
|
|
| >PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.9e-24 Score=192.63 Aligned_cols=187 Identities=13% Similarity=0.178 Sum_probs=152.7
Q ss_pred eEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCch-hHHHHHHHHHH
Q 022946 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT-NFNQILEYVKD 167 (289)
Q Consensus 89 ~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~-~~~~l~e~i~~ 167 (289)
...+.+ ++|||++|+||..+...+ +.+.+++++|+++++.+.+.|+++|.|.|...+.+|.+. ....+.++++.
T Consensus 125 ~a~i~i-~rGC~~~CsFC~ip~~rG----~~rsrs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~ 199 (418)
T PRK14336 125 SANVTI-MQGCDNFCTYCVVPYRRG----REKSRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSA 199 (418)
T ss_pred EEEEEe-ccCCCCCCccCCccccCC----CCccCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHH
Confidence 456777 999999999998874322 345579999999999999999999999876544444321 12345556655
Q ss_pred HHhc----CceEEE-eCCCCCHHHHHHHHHc--CCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHc--CCceee
Q 022946 168 IRDM----GMEVCC-TLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCS 237 (289)
Q Consensus 168 ik~~----~~~i~~-~~g~l~~e~l~~L~~a--G~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~ 237 (289)
+.+. .+.+.. ++..++++.++.|+++ ++..+.+++||+ +++++.++++++.+++.++++.+++. |+.+.+
T Consensus 200 l~~~~~~~~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~lglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~pgi~i~~ 279 (418)
T PRK14336 200 LHDIPGLLRIRFLTSHPKDISQKLIDAMAHLPKVCRSLSLPVQAGDDTILAAMRRGYTNQQYRELVERLKTAMPDISLQT 279 (418)
T ss_pred HHhcCCccEEEEeccChhhcCHHHHHHHHhcCccCCceecCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCEEEE
Confidence 5532 233322 2445789999999985 599999999999 99999999999999999999999998 999999
Q ss_pred cEEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 238 GGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 238 ~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
++|+|+ |||.+++.++++++.++ +++.+.++.|.|.||||++.
T Consensus 280 d~IvGfPGET~edf~~tl~fi~~~--~~~~~~v~~ysp~pGT~a~~ 323 (418)
T PRK14336 280 DLIVGFPSETEEQFNQSYKLMADI--GYDAIHVAAYSPRPQTVAAR 323 (418)
T ss_pred EEEEECCCCCHHHHHHHHHHHHhc--CCCEEEeeecCCCCCChhHh
Confidence 999999 99999999999999999 68999999999999999985
|
|
| >TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.6e-24 Score=194.49 Aligned_cols=190 Identities=17% Similarity=0.242 Sum_probs=154.0
Q ss_pred eEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCC-CCch--hHHHHHHHH
Q 022946 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-GRKT--NFNQILEYV 165 (289)
Q Consensus 89 ~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~-ge~~--~~~~l~e~i 165 (289)
..++++ ++||+++|+||..+...+ +.+.+++++|+++++.+.+.|+++|+|.|...+.+ |.+. ....+.+++
T Consensus 146 ~~~v~i-~rGC~~~CsfC~~~~~~G----~~rsr~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~g~d~~~~~~~l~~Ll 220 (438)
T TIGR01574 146 KSFINI-MIGCNKFCTYCIVPYTRG----DEISRPFDDILQEVQKLAEKGVREITLLGQNVNAYRGKDFEGKTMDFSDLL 220 (438)
T ss_pred eEEeeh-hcCCCCCCCCCCeeeecC----CCcccCHHHHHHHHHHHHHcCCeEEEEEecccCCccCCCCCCCcccHHHHH
Confidence 456787 999999999999874322 23457999999999999999999999987544433 3211 112355556
Q ss_pred HHHHh-cCce-EE---EeCCCCCHHHHHHHHHcC--CCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHc--CCce
Q 022946 166 KDIRD-MGME-VC---CTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINV 235 (289)
Q Consensus 166 ~~ik~-~~~~-i~---~~~g~l~~e~l~~L~~aG--~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v 235 (289)
+.+.+ .++. +. .++..++++.++.|+++| +.++.+++||+ +++++.++++++.++++++++.+++. |+.+
T Consensus 221 ~~l~~~~~~~~ir~~~~~p~~l~~ell~~l~~~g~~~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~ir~~~~~i~i 300 (438)
T TIGR01574 221 RELSTIDGIERIRFTSSHPLDFDDDLIEVFANNPKLCKSMHLPVQSGSSEILKLMKRGYTREWYLNLVRKLRAACPNVSI 300 (438)
T ss_pred HHHHhcCCceEEEEecCCcccCCHHHHHHHHhCCCccCceeeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeE
Confidence 55542 2332 21 234568999999999999 99999999999 99999999999999999999999997 7788
Q ss_pred eecEEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCCC
Q 022946 236 CSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKL 285 (289)
Q Consensus 236 ~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~~ 285 (289)
.+++|+|+ |||++|+.++++++.++ +++.+.++.|.|.||||+++.+.
T Consensus 301 ~~d~IvG~PgEt~ed~~~tl~~i~~~--~~~~~~~~~~sp~pGT~~~~~~~ 349 (438)
T TIGR01574 301 STDIIVGFPGETEEDFEETLDLLREV--EFDSAFSFIYSPRPGTPAADMPD 349 (438)
T ss_pred eeCEEEeCCCCCHHHHHHHHHHHHhc--CCCeeeeEEecCCCCCchhhCCC
Confidence 99999999 99999999999999999 68999999999999999998753
|
Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme. |
| >PRK08207 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-23 Score=192.29 Aligned_cols=225 Identities=21% Similarity=0.252 Sum_probs=161.6
Q ss_pred CCCCHHHHHHhhC------CChHHHHHHHHHHHHhhhC-CCeeEEeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCC
Q 022946 51 HDWSKDDIKSIYD------SPVLDLLFHGAQVHRHAHN-FREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMT 123 (289)
Q Consensus 51 ~~ls~ee~~~l~~------~~~~~l~~~a~~~~r~~~~-g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~ 123 (289)
.++|.+|+...+. .+-.+|+...++..+.... ...-.+..+|. .+.||.+|.||+++.....+........
T Consensus 120 ~g~~~~~~~~~~~~~y~~~~~k~~l~~~~~~~~~~~~~~~~~~~~sLYih--IPFC~~~C~YCsf~s~~~~~~~~~~~~Y 197 (488)
T PRK08207 120 EGLSKEEIHKELKEEYLISEEKAKLLLEIAKRELSFLLYRDKNEVSIYIG--IPFCPTRCLYCSFPSYPIKGYKGLVEPY 197 (488)
T ss_pred cCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhccCCCCceEEEEe--cCCCCCcCCCCCCccccCCCCcchHHHH
Confidence 4788999887664 2346677777776666652 11122333344 5799999999998753211111100012
Q ss_pred HHHHHHHHHHHHH------cCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-c----Cc-eEEE---eCCCCCHHHHH
Q 022946 124 KDAVMQAAQKAKE------AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-M----GM-EVCC---TLGMLEKHQAI 188 (289)
Q Consensus 124 ~eei~~~~~~~~~------~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~----~~-~i~~---~~g~l~~e~l~ 188 (289)
.+.++++++.... .++..|.|+||.. +.- ..+++.++++.+++ . ++ ++.+ ++..++++.++
T Consensus 198 ~~aL~~EI~~~~~~~~~~~~~v~tIyfGGGTP-t~L---~~~~L~~Ll~~i~~~f~~~~~~~EiTvE~grPd~it~e~L~ 273 (488)
T PRK08207 198 LEALHYEIEEIGKYLKEKGLKITTIYFGGGTP-TSL---TAEELERLLEEIYENFPDVKNVKEFTVEAGRPDTITEEKLE 273 (488)
T ss_pred HHHHHHHHHHHHhhhcccCCceeEEEEeCCCc-cCC---CHHHHHHHHHHHHHhccccCCceEEEEEcCCCCCCCHHHHH
Confidence 3555555554422 1456677776432 222 23445555544442 1 23 3433 34579999999
Q ss_pred HHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCC-ceeecEEeec-CCCHHHHHHHHHHHhcCCCCCC
Q 022946 189 ELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGI-NVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPE 265 (289)
Q Consensus 189 ~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi-~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~ 265 (289)
.|+++|+++|++|+||+ +++++.+.+.+++++++++++.++++|+ .+++++|+|+ |||.+++.++++++.++ +++
T Consensus 274 ~Lk~~Gv~RISIGvQS~~d~vLk~igR~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgEt~ed~~~tl~~l~~L--~pd 351 (488)
T PRK08207 274 VLKKYGVDRISINPQTMNDETLKAIGRHHTVEDIIEKFHLAREMGFDNINMDLIIGLPGEGLEEVKHTLEEIEKL--NPE 351 (488)
T ss_pred HHHhcCCCeEEEcCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhc--CcC
Confidence 99999999999999999 9999999999999999999999999999 6999999999 99999999999999999 699
Q ss_pred eeeeccceecCCCCCCCC
Q 022946 266 SVPINALLAVKGTPLQDQ 283 (289)
Q Consensus 266 ~v~i~~~~p~pgTpl~~~ 283 (289)
.+.++.+.|.|||+|+..
T Consensus 352 ~isv~~L~i~~gT~l~~~ 369 (488)
T PRK08207 352 SLTVHTLAIKRASRLTEN 369 (488)
T ss_pred EEEEEeceEcCCChHHHh
Confidence 999999999999999853
|
|
| >PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=193.31 Aligned_cols=185 Identities=14% Similarity=0.214 Sum_probs=152.1
Q ss_pred eEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHH
Q 022946 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDI 168 (289)
Q Consensus 89 ~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~i 168 (289)
.+++.+ ++|||++|+||..+... .+.+.+++|+|+++++.+.+.|+++|.|.|...+.+|.. ...+.++++.+
T Consensus 155 ~a~l~i-srGC~~~CsFC~ip~~r----G~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~--~~~l~~Ll~~l 227 (449)
T PRK14332 155 QAFVTI-MRGCNNFCTFCVVPYTR----GRERSRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQ--STDFAGLIQML 227 (449)
T ss_pred eEEEEe-cCCcCCCCCCCCccccc----CCcccCCHHHHHHHHHHHHHCCCeEEEEecccCCcccCC--cccHHHHHHHH
Confidence 356777 99999999999987432 234557999999999999999999999988665554432 12456666655
Q ss_pred Hhc-C---ceEEE-eCCCCCHHHHHHHHHcC--CCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHc--CCceeec
Q 022946 169 RDM-G---MEVCC-TLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCSG 238 (289)
Q Consensus 169 k~~-~---~~i~~-~~g~l~~e~l~~L~~aG--~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~~ 238 (289)
.+. + +.+.. ++..++++.++.|+++| +..+.+++||+ +++++.++++++.+++.++++.+++. |+.+.++
T Consensus 228 ~~~~~~~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~p~i~i~td 307 (449)
T PRK14332 228 LDETTIERIRFTSPHPKDFPDHLLSLMAKNPRFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIVPDVGITTD 307 (449)
T ss_pred hcCCCcceEEEECCCcccCCHHHHHHHHhCCCccceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 422 2 22322 23457899999999998 89999999999 99999999999999999999999997 6778899
Q ss_pred EEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 239 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 239 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
+|+|+ |||++|+.++++++.++ +++.+.++.|.|.||||.+.
T Consensus 308 ~IvGfPgET~edf~~tl~~v~~l--~~~~~~~f~ys~~~GT~a~~ 350 (449)
T PRK14332 308 IIVGFPNETEEEFEDTLAVVREV--QFDMAFMFKYSEREGTMAKR 350 (449)
T ss_pred EEeeCCCCCHHHHHHHHHHHHhC--CCCEEEEEEecCCCCChhHH
Confidence 99999 99999999999999999 68999999999999999983
|
|
| >PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-23 Score=191.05 Aligned_cols=187 Identities=19% Similarity=0.246 Sum_probs=150.0
Q ss_pred EeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCc-----------hhH
Q 022946 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-----------TNF 158 (289)
Q Consensus 90 ~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~-----------~~~ 158 (289)
..+.+ ++|||++|+||..+..++ +.+..++++|+++++.+.+.|+++|.|.+.+.+.+|.+ ...
T Consensus 141 a~v~i-srGCp~~CsFC~ip~~~G----~~rsr~~e~Vv~Ei~~l~~~g~kei~l~~~d~~~yg~d~~~~~~~~~~~~~~ 215 (440)
T PRK14862 141 AYLKI-SEGCNHRCTFCIIPSMRG----DLVSRPIGDVLREAERLVKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPVK 215 (440)
T ss_pred EEEEe-ccCCCCCCccCCcccccC----CccccCHHHHHHHHHHHHHCCCceEEEEecChhhhccccccccccccccchh
Confidence 45676 999999999999875432 34557999999999999999999999886443223211 013
Q ss_pred HHHHHHHHHHHhcCceEE---EeCCCCCHHHHHHHHHcCCC--eEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHc-
Q 022946 159 NQILEYVKDIRDMGMEVC---CTLGMLEKHQAIELKKAGLT--AYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA- 231 (289)
Q Consensus 159 ~~l~e~i~~ik~~~~~i~---~~~g~l~~e~l~~L~~aG~~--~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~- 231 (289)
.++.++++.+.+.++.+. ..+..++++.++.|++ |+. .+.+++||. +++++.++++.++++.++.++.+++.
T Consensus 216 ~~~~~Ll~~l~~~~~~~r~~~~~p~~~~dell~~m~~-g~~~~~l~IglESgs~~vLk~m~r~~~~~~~~~~i~~lr~~~ 294 (440)
T PRK14862 216 TRMTDLCEALGELGAWVRLHYVYPYPHVDEVIPLMAE-GKILPYLDIPFQHASPRVLKRMKRPASVEKTLERIKKWREIC 294 (440)
T ss_pred hHHHHHHHHHHhcCCEEEEecCCCCcCCHHHHHHHhc-CCCccccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHC
Confidence 567777777775555222 1222367899999999 654 788899999 99999999999999999999999995
Q ss_pred -CCceeecEEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCC
Q 022946 232 -GINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284 (289)
Q Consensus 232 -Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~ 284 (289)
|+.+.+++|+|+ |||.+++.++++++.++ +++.+.++.|.|.||||.+..+
T Consensus 295 ~~i~i~t~~IvGfPgET~edf~~tl~fi~e~--~~d~~~~f~ysP~pGT~a~~~~ 347 (440)
T PRK14862 295 PDLTIRSTFIVGFPGETEEDFQMLLDFLKEA--QLDRVGCFKYSPVEGATANDLP 347 (440)
T ss_pred CCceecccEEEECCCCCHHHHHHHHHHHHHc--CCCeeeeEeecCCCCCchhhCC
Confidence 788899999999 99999999999999999 6899999999999999987543
|
|
| >PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-23 Score=191.88 Aligned_cols=190 Identities=17% Similarity=0.245 Sum_probs=150.6
Q ss_pred EeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC-chhHHHHHHHHH
Q 022946 88 QCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR-KTNFNQILEYVK 166 (289)
Q Consensus 88 ~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge-~~~~~~l~e~i~ 166 (289)
...++.+ ++|||++|.||..+...+ +.+..++++|+++++.+.+.|+++|.|.|...+.+|. +.....+.++++
T Consensus 138 ~~~~l~i-srGC~~~CsfC~~p~~~g----~~~sr~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~~~~Ll~ 212 (440)
T PRK14334 138 LSAHLTI-MRGCNHHCTYCIVPTTRG----PEVSRHPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQPGFPSFAELLR 212 (440)
T ss_pred eEEEEEe-ccCCCCCCcCCCcchhcC----CCccCCHHHHHHHHHHHHHCCCeEEEEEeccccccccCCCCcCCHHHHHH
Confidence 3456777 999999999999875322 2234699999999999999999999998744332322 112223444444
Q ss_pred HHHhcCc---eEEE-eCCCCCHHHHHHHHHc--CCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCc--eee
Q 022946 167 DIRDMGM---EVCC-TLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN--VCS 237 (289)
Q Consensus 167 ~ik~~~~---~i~~-~~g~l~~e~l~~L~~a--G~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~--v~~ 237 (289)
.+.+.++ .+.. +...++++.++.|+++ |+.++.+++||+ +++++.++++++.++++++++.++++|.. +++
T Consensus 213 ~l~~~~i~~ir~~~~~p~~i~~ell~~l~~~~~g~~~l~igvQSgs~~vLk~m~R~~~~~~~~~~v~~lr~~~~~i~i~~ 292 (440)
T PRK14334 213 LVGASGIPRVKFTTSHPMNFTDDVIAAMAETPAVCEYIHLPVQSGSDRVLRRMAREYRREKYLERIAEIREALPDVVLST 292 (440)
T ss_pred HHHhcCCcEEEEccCCcccCCHHHHHHHHhcCcCCCeEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 4443343 3322 2445899999999995 599999999999 99999999999999999999999999764 788
Q ss_pred cEEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCC
Q 022946 238 GGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284 (289)
Q Consensus 238 ~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~ 284 (289)
++|+|+ |||.+|+.++++++.++ +++.+.++.|.|.||||++..+
T Consensus 293 d~IvG~PgEt~ed~~~tl~~i~~l--~~~~i~~f~ysp~pGT~~~~~~ 338 (440)
T PRK14334 293 DIIVGFPGETEEDFQETLSLYDEV--GYDSAYMFIYSPRPGTPSYKHF 338 (440)
T ss_pred eEEEECCCCCHHHHHHHHHHHHhc--CCCEeeeeEeeCCCCChhHhcc
Confidence 999999 99999999999999999 6899999999999999998753
|
|
| >PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-23 Score=191.37 Aligned_cols=192 Identities=16% Similarity=0.198 Sum_probs=153.2
Q ss_pred eEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCch--hHHHHHHHHH
Q 022946 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT--NFNQILEYVK 166 (289)
Q Consensus 89 ~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~--~~~~l~e~i~ 166 (289)
...+.+ ++|||++|+||..+... .+.+..++++|+++++.+.+.|+++|.|.+...+.+|.+. ....+.++++
T Consensus 149 ~a~v~i-~rGC~~~CsFC~ip~~r----G~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll~ 223 (446)
T PRK14337 149 SAFVNI-MQGCDNFCAYCIVPYTR----GRQKSRSSAAVLDECRALVDRGAREITLLGQNVNSYGQDKHGDGTSFAQLLH 223 (446)
T ss_pred EEEEEe-ccCCCCCCcCCCcccCC----CCCeeCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCCCccHHHHHH
Confidence 456777 89999999999886432 2334579999999999999999999999875443333221 0123455555
Q ss_pred HHHhc-C---ceEE-EeCCCCCHHHHHHHHHc--CCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHc--CCcee
Q 022946 167 DIRDM-G---MEVC-CTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVC 236 (289)
Q Consensus 167 ~ik~~-~---~~i~-~~~g~l~~e~l~~L~~a--G~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~ 236 (289)
.+.+. + +.+. .+...++++.++.|+++ |+.++.+++||+ +++++.++++++.+++.++++.+++. |+.+.
T Consensus 224 ~l~~~~g~~~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~~~i~i~ 303 (446)
T PRK14337 224 KVAALPGLERLRFTTPHPKDIAPEVIEAFGELPNLCPRLHLPLQSGSDRILKAMGRKYDMARYLDIVTDLRAARPDIALT 303 (446)
T ss_pred HHHhcCCCcEEEEccCCcccCCHHHHHHHHhCCcccCeEEECCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCeEE
Confidence 54432 2 3332 23445789999999984 689999999999 99999999999999999999999997 68899
Q ss_pred ecEEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCC-CCC
Q 022946 237 SGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-LKY 287 (289)
Q Consensus 237 ~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~-~~~ 287 (289)
+++|+|+ |||.+|+.++++++.++ +++.+.++.|.|.||||.+..+ +++
T Consensus 304 ~d~IvG~PgET~ed~~~tl~~l~~~--~~~~~~~f~ysp~pgT~a~~~~~~v~ 354 (446)
T PRK14337 304 TDLIVGFPGETEEDFEQTLEAMRTV--GFASSFSFCYSDRPGTRAEMLPGKVP 354 (446)
T ss_pred EeEEEECCCCCHHHHHHHHHHHHhc--CCCeeEEEecCCCCCCccccCCCCCC
Confidence 9999999 99999999999999999 6899999999999999999875 344
|
|
| >smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-23 Score=173.24 Aligned_cols=187 Identities=28% Similarity=0.430 Sum_probs=146.1
Q ss_pred eeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcC-----CcEEEEecccCCCCCCchhHHHHHHHH
Q 022946 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAG-----STRFCMGAAWRDTIGRKTNFNQILEYV 165 (289)
Q Consensus 91 ~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g-----~~~i~i~~~~~~~~ge~~~~~~l~e~i 165 (289)
.+.+ |++|+++|.||+..... + . ...++++++.++++.+.+.| ++.+.++|+.... ..+..+..+++.+
T Consensus 4 ~i~~-t~~C~~~C~yC~~~~~~--~-~-~~~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg~~~~-~~~~~~~~~~~~~ 77 (216)
T smart00729 4 LYII-TRGCPRRCTFCSFPSAR--G-K-LRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTL-LSPEQLEELLEAI 77 (216)
T ss_pred EEEe-cCchhccCCcCCcCccc--c-c-hhHHHHHHHHHHHHHHHhcccCCcceeEEEECCCCCCC-CCHHHHHHHHHHH
Confidence 3455 99999999999987533 1 2 34478999999998886554 3556666643221 1111234444444
Q ss_pred HHHHhc--C--ceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcC-CceeecE
Q 022946 166 KDIRDM--G--MEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAG-INVCSGG 239 (289)
Q Consensus 166 ~~ik~~--~--~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~G-i~v~~~~ 239 (289)
+..... . +.+.++.+.++++.+++|+++|++.+.+++|+. ++.++.++++.++++++++++.++++| +.+...+
T Consensus 78 ~~~~~~~~~~~~~~~tn~~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~ 157 (216)
T smart00729 78 REILGLADDVEITIETRPGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREAGPIKVSTDL 157 (216)
T ss_pred HHhCCCCCCeEEEEEeCcccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCCHHHHHHHHHHHHHhCCcceEEeE
Confidence 443321 2 233444467899999999999999999999999 999999999999999999999999999 8999999
Q ss_pred Eeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCCC
Q 022946 240 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKL 285 (289)
Q Consensus 240 i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~~ 285 (289)
++|+ +++.+++.+.++++.++ +++.+.++.|+|.||||++..++
T Consensus 158 ~~g~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~p~~~t~~~~~~~ 202 (216)
T smart00729 158 IVGLPGETEEDFEETLKLLKEL--GPDRVSIFPLSPRPGTPLAKLYK 202 (216)
T ss_pred EecCCCCCHHHHHHHHHHHHHc--CCCeEEeeeeeeCCCChHHHhcc
Confidence 9999 69999999999999999 68999999999999999998763
|
This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases. |
| >PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-23 Score=192.82 Aligned_cols=189 Identities=15% Similarity=0.261 Sum_probs=151.0
Q ss_pred eEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC------c--hhHHH
Q 022946 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR------K--TNFNQ 160 (289)
Q Consensus 89 ~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge------~--~~~~~ 160 (289)
..++.+ ++|||++|+||.++...+ +.+.+++++|+++++.+.+.|+++|.|.|...+.+|. | .....
T Consensus 149 ~a~i~i-~~GC~~~CsFC~ip~~rG----~~rsr~~e~V~~Ei~~l~~~g~kei~l~~~~~~~yg~d~~~~~p~~~~~~~ 223 (448)
T PRK14333 149 TAWVNV-IYGCNERCTYCVVPSVRG----KEQSRTPEAIRAEIEELAAQGYKEITLLGQNIDAYGRDLPGTTPEGRHQHT 223 (448)
T ss_pred eEEEEh-hcCCCCCCCCCceecccC----CCcccCHHHHHHHHHHHHHCCCcEEEEEecccchhcCCCCCcccccccccc
Confidence 356777 999999999999874332 2234689999999999999999999987643222221 1 01135
Q ss_pred HHHHHHHHHhc-Cc---eEE-EeCCCCCHHHHHHHHHc--CCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHc-
Q 022946 161 ILEYVKDIRDM-GM---EVC-CTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA- 231 (289)
Q Consensus 161 l~e~i~~ik~~-~~---~i~-~~~g~l~~e~l~~L~~a--G~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~- 231 (289)
+.++++.+.+. ++ .+. .++..++++.++.|+++ |+..+.+++||. +++++.++++++.+++.++++.+++.
T Consensus 224 l~~Ll~~i~~~~~~~rir~~~~~p~~~~~eli~~~~~~~~~~~~l~igiQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~ 303 (448)
T PRK14333 224 LTDLLYYIHDVEGIERIRFATSHPRYFTERLIKACAELPKVCEHFHIPFQSGDNEILKAMARGYTHEKYRRIIDKIREYM 303 (448)
T ss_pred HHHHHHHHHhcCCCeEEEECCCChhhhhHHHHHHHhcCCcccccccCCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhC
Confidence 66666666542 32 221 22445789999999986 589999999999 99999999999999999999999998
Q ss_pred -CCceeecEEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCC
Q 022946 232 -GINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284 (289)
Q Consensus 232 -Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~ 284 (289)
|+.+.+++|+|+ |||.+++.++++++.++ +++.+.++.|.|.||||++..+
T Consensus 304 p~i~i~~d~IvGfPgET~edf~~tl~~l~~~--~~~~~~~~~~sp~pGT~~~~~~ 356 (448)
T PRK14333 304 PDASISADAIVGFPGETEAQFENTLKLVEEI--GFDQLNTAAYSPRPGTPAALWD 356 (448)
T ss_pred CCcEEEeeEEEECCCCCHHHHHHHHHHHHHc--CCCEEeeeeeecCCCCchhhCC
Confidence 777999999999 99999999999999999 6899999999999999998764
|
|
| >COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.5e-23 Score=183.95 Aligned_cols=194 Identities=13% Similarity=0.260 Sum_probs=156.0
Q ss_pred EeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchh--HHHHHHHH
Q 022946 88 QCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTN--FNQILEYV 165 (289)
Q Consensus 88 ~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~--~~~l~e~i 165 (289)
..+.|.+ +.||++.|+||..+.. .|. .+..++++|+++++.+.+.|+++|++.|.+.+.+|.+.. ...+.+++
T Consensus 144 ~~A~v~I-~eGCn~~CtfCiiP~~--RG~--~rSr~~e~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll 218 (437)
T COG0621 144 VRAFVKI-QEGCNKFCTFCIIPYA--RGK--ERSRPPEDILKEVKRLVAQGVKEIVLTGQDVNAYGKDLGGGKPNLADLL 218 (437)
T ss_pred eEEEEEh-hcCcCCCCCeeeeecc--CCC--ccCCCHHHHHHHHHHHHHCCCeEEEEEEEehhhccccCCCCccCHHHHH
Confidence 3467888 9999999999998743 232 234599999999999999999999998877666665543 24455555
Q ss_pred HHHHhc-C---ceEE-EeCCCCCHHHHHHHHHc--CCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHc--CCce
Q 022946 166 KDIRDM-G---MEVC-CTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINV 235 (289)
Q Consensus 166 ~~ik~~-~---~~i~-~~~g~l~~e~l~~L~~a--G~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v 235 (289)
+.+-+. | +.+. .++-.++++.++.+.+. =+..+.+.+|+. +++++.|+++++.+++++.++.+++. .+.+
T Consensus 219 ~~l~~I~G~~riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlPvQsGsd~ILk~M~R~yt~e~~~~~i~k~R~~~Pd~~i 298 (437)
T COG0621 219 RELSKIPGIERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPVQSGSDRILKRMKRGYTVEEYLEIIEKLRAARPDIAI 298 (437)
T ss_pred HHHhcCCCceEEEEecCCchhcCHHHHHHHhcCCcccccccCccccCCHHHHHHhCCCcCHHHHHHHHHHHHHhCCCceE
Confidence 554432 2 3332 22455889999999985 356778899999 99999999999999999999999885 5678
Q ss_pred eecEEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCC-CCCCC
Q 022946 236 CSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ-KLKYG 288 (289)
Q Consensus 236 ~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~-~~~~~ 288 (289)
.+++|+|+ |||+||+.++++++++. +++.+.++.|.|.||||-+.. .++|.
T Consensus 299 ~tDiIVGFPgETeedFe~tl~lv~e~--~fd~~~~F~YSpRpGTpAa~~~~qvp~ 351 (437)
T COG0621 299 STDIIVGFPGETEEDFEETLDLVEEV--RFDRLHVFKYSPRPGTPAALMPDQVPE 351 (437)
T ss_pred eccEEEECCCCCHHHHHHHHHHHHHh--CCCEEeeeecCCCCCCccccCCCCCCH
Confidence 99999999 99999999999999999 699999999999999999964 35553
|
|
| >PRK08446 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-22 Score=181.63 Aligned_cols=183 Identities=13% Similarity=0.135 Sum_probs=144.0
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH----cCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE----AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM 171 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~----~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~ 171 (289)
-+.|+.+|.||.+...... ........+.++++++...+ .+++.|.|+||... .-.+..+.++++.++.....
T Consensus 7 iPFC~~~C~yC~f~~~~~~--~~~~~~y~~~L~~Ei~~~~~~~~~~~v~~iyfGGGTPs-~l~~~~l~~ll~~i~~~~~~ 83 (350)
T PRK08446 7 IPFCESKCGYCAFNSYENK--HDLKKEYMQALCLDLKFELEQFTDEKIESVFIGGGTPS-TVSAKFYEPIFEIISPYLSK 83 (350)
T ss_pred eCCccCcCCCCCCcCcCCC--cccHHHHHHHHHHHHHHHHhhccCCceeEEEECCCccc-cCCHHHHHHHHHHHHHhcCC
Confidence 5799999999998753211 11111245667777764432 25777888765432 22344566666666554222
Q ss_pred C--ceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCc-eeecEEeec-CCC
Q 022946 172 G--MEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGL-GEA 246 (289)
Q Consensus 172 ~--~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~~i~Gl-get 246 (289)
+ +.+.+++..++.+.++.|+++|+++|++|+||+ +++++.+.+.++++++.++++.++++|+. ++.++|+|+ |+|
T Consensus 84 ~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgqt 163 (350)
T PRK08446 84 DCEITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKAGFENISIDLIYDTPLDN 163 (350)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCC
Confidence 3 345566778999999999999999999999999 99999999999999999999999999996 899999999 999
Q ss_pred HHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCC
Q 022946 247 EEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ 283 (289)
Q Consensus 247 ~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~ 283 (289)
.+++.++++++.++ +++.+.++.+.|.||||+...
T Consensus 164 ~~~~~~~l~~~~~l--~~~~is~y~L~~~~gT~l~~~ 198 (350)
T PRK08446 164 KKLLKEELKLAKEL--PINHLSAYSLTIEENTPFFEK 198 (350)
T ss_pred HHHHHHHHHHHHhc--CCCEEEeccceecCCChhHHh
Confidence 99999999999999 699999999999999999874
|
|
| >PRK05904 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.1e-23 Score=182.13 Aligned_cols=185 Identities=13% Similarity=0.145 Sum_probs=140.4
Q ss_pred cCCCCcCCCCCCCCCCCCCC-CCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--C
Q 022946 96 TGGCSEDCSYCPQSSRYDTG-VKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--G 172 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~-~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~ 172 (289)
-+.|+.+|.||.+.+..... ...+.....+++.++++.+....++.|.|+||.... -.+..+..+++.++..-.. .
T Consensus 13 iPFC~~kC~yC~f~~~~~~~~~~~~~~~~~~~l~~ei~~~~~~~~~tiy~GGGTPs~-L~~~~l~~ll~~i~~~~~~~~e 91 (353)
T PRK05904 13 IPFCQYICTFCDFKRILKTPQTKKIFKDFLKNIKMHIKNFKIKQFKTIYLGGGTPNC-LNDQLLDILLSTIKPYVDNNCE 91 (353)
T ss_pred eCCccCcCCCCCCeeccCCcccHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCcccc-CCHHHHHHHHHHHHHhcCCCCe
Confidence 47899999999987542111 111111234555555443322446778777654322 2233444444444432111 2
Q ss_pred ceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCc-eeecEEeec-CCCHHH
Q 022946 173 MEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGL-GEAEED 249 (289)
Q Consensus 173 ~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~~i~Gl-get~ed 249 (289)
+.+.+++..++++.++.|+++|+++|++|+||+ +++++.+.++++.++++++++.++++|+. ++.++|+|+ |||.++
T Consensus 92 itiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgqt~e~ 171 (353)
T PRK05904 92 FTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKNGIYNISCDFLYCLPILKLKD 171 (353)
T ss_pred EEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeecCCCCCHHH
Confidence 445667788999999999999999999999999 99999999999999999999999999996 999999999 999999
Q ss_pred HHHHHHHHhcCCCCCCeeeeccceecCCCCCCCC
Q 022946 250 RVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ 283 (289)
Q Consensus 250 ~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~ 283 (289)
+.++++++.++ +++.+.++.+.+.||||++..
T Consensus 172 ~~~tl~~~~~l--~p~~is~y~L~~~~gT~l~~~ 203 (353)
T PRK05904 172 LDEVFNFILKH--KINHISFYSLEIKEGSILKKY 203 (353)
T ss_pred HHHHHHHHHhc--CCCEEEEEeeEecCCChHhhc
Confidence 99999999999 689999999999999999875
|
|
| >PRK08599 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-22 Score=183.16 Aligned_cols=180 Identities=18% Similarity=0.193 Sum_probs=141.4
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc---CCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc-
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA---GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM- 171 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~---g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~- 171 (289)
-+.|+.+|.||.+++....+ ......++.++++++.+... +++.+.|+||. ++.- ..+.+.++++.+++.
T Consensus 8 iPfC~~~C~yC~~~~~~~~~--~~~~~y~~~l~~Ei~~~~~~~~~~i~~i~~gGGt-pt~l---~~~~l~~ll~~i~~~~ 81 (377)
T PRK08599 8 IPFCEHICYYCDFNKVFIKN--QPVDEYLDALIKEMNTYAIRPFDKLKTIYIGGGT-PTAL---SAEQLERLLTAIHRNL 81 (377)
T ss_pred eCCcCCCCCCCCCeeeccCc--cCHHHHHHHHHHHHHHhhhcCCCceeEEEeCCCC-cccC---CHHHHHHHHHHHHHhC
Confidence 46799999999987532111 11113567888888665544 46667665532 2211 235555555555532
Q ss_pred ------CceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCc-eeecEEeec
Q 022946 172 ------GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGL 243 (289)
Q Consensus 172 ------~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~~i~Gl 243 (289)
.+.+.++++.++.+.++.|+++|+++|++|+||+ +++++.++++++.+++.++++.++++|+. ++.++|+|+
T Consensus 82 ~~~~~~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i~~l~~~g~~~v~~dli~Gl 161 (377)
T PRK08599 82 PLSGLEEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHNEEDVYEAIANAKKAGFDNISIDLIYAL 161 (377)
T ss_pred CCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEeeecCC
Confidence 2334566788999999999999999999999999 99999999999999999999999999997 889999999
Q ss_pred -CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCC
Q 022946 244 -GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ 283 (289)
Q Consensus 244 -get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~ 283 (289)
|||.+++.++++++.++ +++.+.++.+.|.||||++..
T Consensus 162 Pgqt~~~~~~~l~~~~~l--~~~~i~~y~l~~~pgT~~~~~ 200 (377)
T PRK08599 162 PGQTIEDFKESLAKALAL--DIPHYSAYSLILEPKTVFYNL 200 (377)
T ss_pred CCCCHHHHHHHHHHHHcc--CCCEEeeeceeecCCChhHHH
Confidence 99999999999999999 689999999999999999753
|
|
| >PRK05799 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-22 Score=182.30 Aligned_cols=182 Identities=20% Similarity=0.302 Sum_probs=141.6
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-cCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCc
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGM 173 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~ 173 (289)
-+.|+++|.||.+...... .......++.++++++.... .+++.|.|+||. +....+..++.+.+.++.+. ..++
T Consensus 10 iPfC~~~C~yC~~~~~~~~--~~~~~~y~~~l~~Ei~~~~~~~~~~~i~~gGGt-ps~l~~~~l~~L~~~i~~~~~~~~~ 86 (374)
T PRK05799 10 IPFCKQKCLYCDFPSYSGK--EDLMMEYIKALSKEIRNSTKNKKIKSIFIGGGT-PTYLSLEALEILKETIKKLNKKEDL 86 (374)
T ss_pred eCCccCCCCCCCCCcccCC--cchHHHHHHHHHHHHHhhcCCCceeEEEECCCc-ccCCCHHHHHHHHHHHHhCCCCCCC
Confidence 5789999999998754221 11111136777777764422 346677776643 33233445555666655432 2233
Q ss_pred e--EEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCc-eeecEEeec-CCCHH
Q 022946 174 E--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGL-GEAEE 248 (289)
Q Consensus 174 ~--i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~~i~Gl-get~e 248 (289)
+ +.++++.++++.++.|+++|+++|++|+||. +++++.+.+.+++++++++++.++++|+. ++.++|+|+ |||.+
T Consensus 87 eitie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l~R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgqt~e 166 (374)
T PRK05799 87 EFTVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLLKYLGRIHTFEEFLENYKLARKLGFNNINVDLMFGLPNQTLE 166 (374)
T ss_pred EEEEEeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHH
Confidence 4 4556778999999999999999999999999 99999999999999999999999999996 899999999 99999
Q ss_pred HHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 249 DRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 249 d~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
++.++++++.++ +++.+.++.+.|.||||+++
T Consensus 167 ~~~~~l~~~~~l--~~~~is~y~l~~~pgT~l~~ 198 (374)
T PRK05799 167 DWKETLEKVVEL--NPEHISCYSLIIEEGTPFYN 198 (374)
T ss_pred HHHHHHHHHHhc--CCCEEEEeccEecCCCHHHH
Confidence 999999999999 68999999999999999875
|
|
| >TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.2e-22 Score=178.56 Aligned_cols=183 Identities=14% Similarity=0.156 Sum_probs=137.3
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHH-HHcC---CcEEEEecccCCCCCCchhHHHHHHHHHHHH--
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKA-KEAG---STRFCMGAAWRDTIGRKTNFNQILEYVKDIR-- 169 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~-~~~g---~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-- 169 (289)
-+.|+.+|.||.+....... .... .-.+.+.+++... ...+ ++.|.|+||.. +.-.+..+..+++.+++.-
T Consensus 7 iPFC~~~C~yC~f~~~~~~~-~~~~-~y~~~l~~Ei~~~~~~~~~~~v~~i~~GGGtP-s~l~~~~l~~ll~~i~~~~~~ 83 (360)
T TIGR00539 7 IPFCENKCGYCDFNSYENKS-GPKE-EYTQALCQDLKHALSQTDQEPLESIFIGGGTP-NTLSVEAFERLFESIYQHASL 83 (360)
T ss_pred eCCCcCcCCCCCCcccCcCc-cCHH-HHHHHHHHHHHHHHHhcCCCcccEEEeCCCch-hcCCHHHHHHHHHHHHHhCCC
Confidence 57999999999987532111 0000 0134444444432 2234 67777776432 2122233444554444321
Q ss_pred hcCce--EEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCc-eeecEEeec-C
Q 022946 170 DMGME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGL-G 244 (289)
Q Consensus 170 ~~~~~--i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~~i~Gl-g 244 (289)
..+.+ +.++++.++.+.++.|+++|+++|++|+||+ +++++.+.+.+++++++++++.++++|+. ++.++|+|+ |
T Consensus 84 ~~~~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPg 163 (360)
T TIGR00539 84 SDDCEITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMYGLPL 163 (360)
T ss_pred CCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCC
Confidence 22333 4566788999999999999999999999999 99999998899999999999999999995 899999999 9
Q ss_pred CCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCC
Q 022946 245 EAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ 283 (289)
Q Consensus 245 et~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~ 283 (289)
+|.+++.++++++.++ +++.+.++.+.|.||||++..
T Consensus 164 qt~~~~~~~l~~~~~l--~~~~is~y~l~~~~gT~~~~~ 200 (360)
T TIGR00539 164 QTLNSLKEELKLAKEL--PINHLSAYALSVEPNTNFEKN 200 (360)
T ss_pred CCHHHHHHHHHHHHcc--CCCEEEeecceEcCCChhhhh
Confidence 9999999999999999 689999999999999999874
|
Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo. |
| >PRK05660 HemN family oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.5e-22 Score=179.12 Aligned_cols=177 Identities=15% Similarity=0.217 Sum_probs=138.2
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCH----HHHHHHHHHHH----HcCCcEEEEecccCCCCCCchhHHHHHHHHHH
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTK----DAVMQAAQKAK----EAGSTRFCMGAAWRDTIGRKTNFNQILEYVKD 167 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~----eei~~~~~~~~----~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ 167 (289)
-+.|+.+|.||.+.+... ... .+. +.++++++... ..+++.|.|+||.... ...+.+.++++.
T Consensus 13 iPFC~~~C~yC~f~~~~~----~~~-~~~~~Y~~~l~~Ei~~~~~~~~~~~v~ti~~GGGtPs~----l~~~~l~~ll~~ 83 (378)
T PRK05660 13 IPWCVQKCPYCDFNSHAL----KGE-VPEDEYVDHLLADLDADLPLVQGREVHSIFIGGGTPSL----FSAEAIQRLLDG 83 (378)
T ss_pred eCCccCcCCCCCCeecCC----CCc-CCHHHHHHHHHHHHHHHhHhccCCceeEEEeCCCcccc----CCHHHHHHHHHH
Confidence 578999999999875321 111 222 33444443211 1357778887643221 123556666665
Q ss_pred HHh-----cCce--EEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCc-eeec
Q 022946 168 IRD-----MGME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSG 238 (289)
Q Consensus 168 ik~-----~~~~--i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~ 238 (289)
+++ .+.+ +.++++.++.+.++.|+++|+++|++|+||+ +++++.+++.+++++.+++++.++++|+. ++.+
T Consensus 84 l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~~v~~d 163 (378)
T PRK05660 84 VRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLRSFNLD 163 (378)
T ss_pred HHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 553 2233 4566788999999999999999999999999 99999999999999999999999999996 7999
Q ss_pred EEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCC
Q 022946 239 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ 283 (289)
Q Consensus 239 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~ 283 (289)
+|+|+ |+|.+++.++++++.++ +++.+.++.+.|.|||++++.
T Consensus 164 li~Glpgqt~~~~~~~l~~~~~l--~p~~is~y~l~~~~gT~l~~~ 207 (378)
T PRK05660 164 LMHGLPDQSLEEALDDLRQAIAL--NPPHLSWYQLTIEPNTLFGSR 207 (378)
T ss_pred eecCCCCCCHHHHHHHHHHHHhc--CCCeEEeeccEeccCCccccc
Confidence 99999 99999999999999999 699999999999999999874
|
|
| >PRK07379 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=178.43 Aligned_cols=185 Identities=15% Similarity=0.166 Sum_probs=139.3
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcC-CC----CHHHHHHHHHHHHH--cCCcEEEEecccCCCCCCchhHHHHHHHHHHH
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQK-LM----TKDAVMQAAQKAKE--AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDI 168 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~-~~----~~eei~~~~~~~~~--~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~i 168 (289)
-+.|+.+|.||.++........+.. .. -.+.+.++++.... .+++.|.|+||.... -.+..+..+++.++..
T Consensus 17 iPFC~~~C~YC~f~~~~~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~i~~iy~GGGTps~-l~~~~l~~ll~~i~~~ 95 (400)
T PRK07379 17 IPFCRRRCFYCDFPISVVGDRTRGGTSGLIEEYVEVLCQEIAITPSFGQPLQTVFFGGGTPSL-LSVEQLERILTTLDQR 95 (400)
T ss_pred eccccCcCCCCCCccccccccccccccchHHHHHHHHHHHHHHhhccCCceeEEEECCCcccc-CCHHHHHHHHHHHHHh
Confidence 5799999999998643211101000 01 13455555554322 246778887654322 2233444555554432
Q ss_pred Hhc----CceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCc-eeecEEee
Q 022946 169 RDM----GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIG 242 (289)
Q Consensus 169 k~~----~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~~i~G 242 (289)
-.. .+.+.++++.++.+.++.|+++|+++|++|+||+ +++++.+.+.++.++++++++.++++|+. ++.++|+|
T Consensus 96 ~~~~~~~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~G~~~v~~dlI~G 175 (400)
T PRK07379 96 FGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAGIENFSLDLISG 175 (400)
T ss_pred CCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecC
Confidence 111 2334566788999999999999999999999999 99999999999999999999999999998 99999999
Q ss_pred c-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCC
Q 022946 243 L-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ 283 (289)
Q Consensus 243 l-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~ 283 (289)
+ |||.+++.++++++.++ +++.+.++.+.|.||||++..
T Consensus 176 lPgqt~e~~~~tl~~~~~l--~p~~is~y~L~~~pgT~l~~~ 215 (400)
T PRK07379 176 LPHQTLEDWQASLEAAIAL--NPTHLSCYDLVLEPGTAFGKQ 215 (400)
T ss_pred CCCCCHHHHHHHHHHHHcC--CCCEEEEecceecCCchhHHH
Confidence 9 99999999999999999 699999999999999999864
|
|
| >PRK05628 coproporphyrinogen III oxidase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-21 Score=176.12 Aligned_cols=185 Identities=19% Similarity=0.245 Sum_probs=139.7
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcC--CCCHHHHHHHHHHHHH-c-----CCcEEEEecccCCCCCCchhHHHHHHHHHH
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQK--LMTKDAVMQAAQKAKE-A-----GSTRFCMGAAWRDTIGRKTNFNQILEYVKD 167 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~--~~~~eei~~~~~~~~~-~-----g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ 167 (289)
-+.|+.+|.||.+.+.......... ..-.+.+.++++.... . .++.+.|+||... .-.+..+.++++.++.
T Consensus 9 iPFC~~~C~yC~f~~~~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GGGTPs-~l~~~~l~~ll~~i~~ 87 (375)
T PRK05628 9 VPFCATRCGYCDFNTYTAAELGGGASPDGYLDALRAELELAAAVLGDPAPPVSTVFVGGGTPS-LLGAEGLARVLDAVRD 87 (375)
T ss_pred eCCcCCcCCCCCCCcccccccccccCHHHHHHHHHHHHHHHHHhhccCCCceeEEEeCCCccc-cCCHHHHHHHHHHHHH
Confidence 5789999999998753221100001 0125667777765443 2 2566777664322 2223344444444443
Q ss_pred HHh--cCceE--EEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCc-eeecEEe
Q 022946 168 IRD--MGMEV--CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGII 241 (289)
Q Consensus 168 ik~--~~~~i--~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~~i~ 241 (289)
... .+.++ .+++..++++.++.|+++|+++|++|+||+ +++++.+.+.++.++++++++.++++|+. ++.++|+
T Consensus 88 ~~~~~~~~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~ 167 (375)
T PRK05628 88 TFGLAPGAEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIY 167 (375)
T ss_pred hCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 221 12343 456778999999999999999999999999 99999999999999999999999999998 9999999
Q ss_pred ec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCC
Q 022946 242 GL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ 283 (289)
Q Consensus 242 Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~ 283 (289)
|+ |||.+++.++++++.++ +++.+.++.+.+.||||++..
T Consensus 168 GlPgqt~~~~~~tl~~~~~l--~~~~i~~y~l~~~~gT~l~~~ 208 (375)
T PRK05628 168 GTPGESDDDWRASLDAALEA--GVDHVSAYALIVEDGTALARR 208 (375)
T ss_pred cCCCCCHHHHHHHHHHHHhc--CCCEEEeeeeecCCCChHHHH
Confidence 99 99999999999999999 699999999999999999764
|
|
| >PRK09058 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-21 Score=178.96 Aligned_cols=182 Identities=16% Similarity=0.202 Sum_probs=140.8
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH------cCCcEEEEecccCCCCCCchhHHHHHHHHHHHH
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE------AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~------~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik 169 (289)
-+.|+.+|.||.+.+... .........+.++++++...+ ..++.|.|+||.. +.-.+..+.++++.++..-
T Consensus 68 IPFC~~~C~yC~f~~~~~--~~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~GGGTP-s~L~~~~l~~ll~~i~~~~ 144 (449)
T PRK09058 68 IPFCRTHCTFCGFFQNAW--NPEAVARYTDALIRELAMEADSPLTQSAPIHAVYFGGGTP-TALSAEDLARLITALREYL 144 (449)
T ss_pred eCCcCCcCCCCCCcCcCC--chhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEECCCcc-ccCCHHHHHHHHHHHHHhC
Confidence 578999999999864311 111111255777777765543 2366777776542 2222334455555554422
Q ss_pred hc--C--ceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcC-CceeecEEeec
Q 022946 170 DM--G--MEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAG-INVCSGGIIGL 243 (289)
Q Consensus 170 ~~--~--~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~G-i~v~~~~i~Gl 243 (289)
.. . +.+.+++..++.+.++.|+++|+++|++|+||+ +++++.+.+.++.++++++++.+++.| ..+++++|+|+
T Consensus 145 ~l~~~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lgR~~~~~~~~~~i~~l~~~g~~~v~~DlI~Gl 224 (449)
T PRK09058 145 PLAPDCEITLEGRINGFDDEKADAALDAGANRFSIGVQSFNTQVRRRAGRKDDREEVLARLEELVARDRAAVVCDLIFGL 224 (449)
T ss_pred CCCCCCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCcEEEEEEeeC
Confidence 11 2 334566778999999999999999999999999 999999999999999999999999999 57999999999
Q ss_pred -CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 244 -GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 244 -get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
|+|.+++.++++++.++ +++.+.++.+.+.|||||++
T Consensus 225 PgqT~e~~~~~l~~~~~l--~~~~is~y~L~~~pgT~l~~ 262 (449)
T PRK09058 225 PGQTPEIWQQDLAIVRDL--GLDGVDLYALNLLPGTPLAK 262 (449)
T ss_pred CCCCHHHHHHHHHHHHhc--CCCEEEEeccccCCCCHHHH
Confidence 99999999999999999 69999999999999999876
|
|
| >PRK09057 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-21 Score=174.69 Aligned_cols=183 Identities=14% Similarity=0.135 Sum_probs=141.5
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH----cCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE----AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM 171 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~----~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~ 171 (289)
-+.|..+|.||.+.+..... .. ...-.+.+.++++.... ..++.|.|+||... .-.+..+..+++.++..-..
T Consensus 11 IPFC~~kC~yC~f~~~~~~~-~~-~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs-~l~~~~L~~ll~~i~~~f~~ 87 (380)
T PRK09057 11 WPFCLAKCPYCDFNSHVRHA-ID-QARFAAAFLRELATEAARTGPRTLTSIFFGGGTPS-LMQPETVAALLDAIARLWPV 87 (380)
T ss_pred eCCcCCcCCCCCCcccCcCc-CC-HHHHHHHHHHHHHHHHHHcCCCCcCeEEeCCCccc-cCCHHHHHHHHHHHHHhCCC
Confidence 58999999999987532111 00 00134666666664432 24678888775432 22233444444444432111
Q ss_pred ----CceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec-CC
Q 022946 172 ----GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GE 245 (289)
Q Consensus 172 ----~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-ge 245 (289)
.+.+.++++.++.+.++.|+++|+++|++|+||+ +++++.+.+.++.++..++++.+++++..++.++|+|+ |+
T Consensus 88 ~~~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL~~l~R~~~~~~~~~ai~~~~~~~~~v~~dli~GlPgq 167 (380)
T PRK09057 88 ADDIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLRFLGRLHSVAEALAAIDLAREIFPRVSFDLIYARPGQ 167 (380)
T ss_pred CCCccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHhCccEEEEeecCCCCC
Confidence 2445677888999999999999999999999999 99999999999999999999999999889999999999 99
Q ss_pred CHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCC
Q 022946 246 AEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ 283 (289)
Q Consensus 246 t~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~ 283 (289)
|.+++.+++..+.++ +++.+.++.+.+.|||||++.
T Consensus 168 t~~~~~~~l~~~~~l--~p~~is~y~L~~~~gT~l~~~ 203 (380)
T PRK09057 168 TLAAWRAELKEALSL--AADHLSLYQLTIEEGTAFYGL 203 (380)
T ss_pred CHHHHHHHHHHHHhc--CCCeEEeecceecCCChHHHH
Confidence 999999999999999 699999999999999999863
|
|
| >PLN02951 Molybderin biosynthesis protein CNX2 | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=168.92 Aligned_cols=188 Identities=20% Similarity=0.295 Sum_probs=150.6
Q ss_pred CCeeEEeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHH
Q 022946 83 FREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQIL 162 (289)
Q Consensus 83 g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~ 162 (289)
|..+..- -+++ |.+||++|.||....... .......++.+++.+.++.+.+.|++.|.|+| |||....++.
T Consensus 54 gr~~~~l-risv-T~~CNlrC~yC~~~~~~~-~~~~~~~ls~eei~~~i~~~~~~Gv~~I~~tG------GEPllr~dl~ 124 (373)
T PLN02951 54 GRRHNYL-RISL-TERCNLRCQYCMPEEGVE-LTPKSHLLSQDEIVRLAGLFVAAGVDKIRLTG------GEPTLRKDIE 124 (373)
T ss_pred CCcccEE-EEEE-cCCcCcCCCCCCCCcCCC-CCCccccCCHHHHHHHHHHHHHCCCCEEEEEC------CCCcchhhHH
Confidence 4544322 2666 999999999997653211 11223458999999999988899999999886 6777777889
Q ss_pred HHHHHHHhc-Cce-E-EEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCC-ceee
Q 022946 163 EYVKDIRDM-GME-V-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGI-NVCS 237 (289)
Q Consensus 163 e~i~~ik~~-~~~-i-~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi-~v~~ 237 (289)
++++.+++. ++. + .+|||.+..+.+++|+++|+++|.+++|+. ++.|+.+.+...+++++++|+.+++.|+ .+..
T Consensus 125 eli~~l~~~~gi~~i~itTNG~lL~~~~~~L~~aGld~VnISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vki 204 (373)
T PLN02951 125 DICLQLSSLKGLKTLAMTTNGITLSRKLPRLKEAGLTSLNISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKV 204 (373)
T ss_pred HHHHHHHhcCCCceEEEeeCcchHHHHHHHHHhCCCCeEEEeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEEE
Confidence 999888865 664 4 467998777889999999999999999999 9999999887789999999999999997 4666
Q ss_pred cEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 238 GGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 238 ~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
.+++-.|.+.+++.++++++++++ ..+.+..|+|..+++...
T Consensus 205 n~vv~~g~N~~Ei~~li~~a~~~g---i~vr~ie~mP~~~~~~~~ 246 (373)
T PLN02951 205 NCVVMRGFNDDEICDFVELTRDKP---INVRFIEFMPFDGNVWNV 246 (373)
T ss_pred EEEecCCCCHHHHHHHHHHHHhCC---CeEEEEEcccCCCCcccc
Confidence 655544788999999999999882 568889999999887543
|
|
| >PRK13361 molybdenum cofactor biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=167.46 Aligned_cols=182 Identities=19% Similarity=0.260 Sum_probs=146.9
Q ss_pred CCeeEEeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHH
Q 022946 83 FREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQIL 162 (289)
Q Consensus 83 g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~ 162 (289)
|+++..- .+++ |++||++|.||..... ....+...++.|++.+.++.+.+.|+..|.|+| |||...+++.
T Consensus 10 gr~i~~l-~i~i-T~~CNl~C~yC~~~~~--~~~~~~~~ls~eei~~li~~~~~~Gv~~I~~tG------GEPllr~dl~ 79 (329)
T PRK13361 10 GRTVTYL-RLSV-TDRCDFRCVYCMSEDP--CFLPRDQVLSLEELAWLAQAFTELGVRKIRLTG------GEPLVRRGCD 79 (329)
T ss_pred CCccCeE-EEEe-cCCccccCCCCCCCCC--CcCCccCCCCHHHHHHHHHHHHHCCCCEEEEEC------cCCCccccHH
Confidence 6666432 2666 9999999999985421 111234458999999999999899999999986 6777778888
Q ss_pred HHHHHHHhcC-c-eE-EEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCC-ceee
Q 022946 163 EYVKDIRDMG-M-EV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGI-NVCS 237 (289)
Q Consensus 163 e~i~~ik~~~-~-~i-~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi-~v~~ 237 (289)
++++.+++.+ + .+ .+|||.+..+.++.|+++|+++|++|+|+. ++.|+++.+..+++++++.|+.+++.|+ .+..
T Consensus 80 ~li~~i~~~~~l~~i~itTNG~ll~~~~~~L~~aGl~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~i 159 (329)
T PRK13361 80 QLVARLGKLPGLEELSLTTNGSRLARFAAELADAGLKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKL 159 (329)
T ss_pred HHHHHHHhCCCCceEEEEeChhHHHHHHHHHHHcCCCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEE
Confidence 9998888653 3 33 567898777899999999999999999999 9999999988899999999999999999 6777
Q ss_pred cEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCC
Q 022946 238 GGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 277 (289)
Q Consensus 238 ~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pg 277 (289)
.+++--|++.+++.++++++.++ ++ .+.+..|+|..+
T Consensus 160 n~v~~~g~N~~ei~~~~~~~~~~--gi-~~~~ie~mP~g~ 196 (329)
T PRK13361 160 NAVILRGQNDDEVLDLVEFCRER--GL-DIAFIEEMPLGE 196 (329)
T ss_pred EEEEECCCCHHHHHHHHHHHHhc--CC-eEEEEecccCCC
Confidence 66553388999999999999999 45 456788888765
|
|
| >cd01335 Radical_SAM Radical SAM superfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.8e-21 Score=155.95 Aligned_cols=177 Identities=31% Similarity=0.530 Sum_probs=138.8
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--Cc
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GM 173 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~ 173 (289)
|++|+++|.||+........ .......+++.+.+......+...+.++|| +|.....+.++++.+++. ++
T Consensus 4 ~~~C~~~C~fC~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~gg------ep~~~~~~~~~i~~~~~~~~~~ 75 (204)
T cd01335 4 TRGCNLNCGFCSNPASKGRG--PESPPEIEEILDIVLEAKERGVEVVILTGG------EPLLYPELAELLRRLKKELPGF 75 (204)
T ss_pred CCccCCcCCCCCCCCCCCCC--ccccccHHHHHHHHHHHHhcCceEEEEeCC------cCCccHhHHHHHHHHHhhCCCc
Confidence 89999999999987543211 111112245666666666677777777653 343334788888887755 55
Q ss_pred eEE-EeCC-CCCHHHHHHHHHcCCCeEecCCCch-HHHHhccC-CCCCHHHHHHHHHHHHHcCCceeecEEeec-CCCHH
Q 022946 174 EVC-CTLG-MLEKHQAIELKKAGLTAYNHNLDTS-REFYSKII-TTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEE 248 (289)
Q Consensus 174 ~i~-~~~g-~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~-~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-get~e 248 (289)
.+. .+++ .++++.++.|.++|++.+.+++|+. ++.++.+. +..++++++++++.+++.|+.+.+.+++|. +++.+
T Consensus 76 ~~~i~T~~~~~~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~g~~~~~~~ 155 (204)
T cd01335 76 EISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKIRGSGESFKERLEALKELREAGLGLSTTLLVGLGDEDEE 155 (204)
T ss_pred eEEEEcCcccCCHHHHHHHHhCCCceEEEEcccCCHHHHHHHhcCCcCHHHHHHHHHHHHHcCCCceEEEEEecCCChhH
Confidence 542 2344 4589999999999999999999999 99999888 677999999999999999999999999999 66668
Q ss_pred HHHHHHHHHhcCCCCCCeeeeccceecCCCCCC
Q 022946 249 DRVGLLHTLATLPTHPESVPINALLAVKGTPLQ 281 (289)
Q Consensus 249 d~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~ 281 (289)
++.++++++.++. ++..+.+..|.|.|||||+
T Consensus 156 ~~~~~~~~l~~~~-~~~~~~~~~~~p~~~t~~~ 187 (204)
T cd01335 156 DDLEELELLAEFR-SPDRVSLFRLLPEEGTPLE 187 (204)
T ss_pred HHHHHHHHHHhhc-CcchhhhhhhcccCCCeee
Confidence 9999999999883 2789999999999999998
|
Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o |
| >PRK06294 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.2e-21 Score=172.31 Aligned_cols=179 Identities=16% Similarity=0.183 Sum_probs=136.2
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCC-CHHHHHHH-HHHHHH----cCCcEEEEecccCCCCCCchhHHHHHHHHHHHH
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLM-TKDAVMQA-AQKAKE----AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~-~~eei~~~-~~~~~~----~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik 169 (289)
-+.|..+|.||.+..... ...... -.+.++++ ++.... ..++.|.|+||.. +.- ..+.+.++++.++
T Consensus 13 IPFC~~~C~yC~f~~~~~---~~~~~~~y~~~l~~E~~~~~~~~~~~~~i~~iy~GGGTP-s~l---~~~~l~~ll~~i~ 85 (370)
T PRK06294 13 IPFCTKKCHYCSFYTIPY---KEESVSLYCNAVLKEGLKKLAPLRCSHFIDTVFFGGGTP-SLV---PPALIQDILKTLE 85 (370)
T ss_pred eCCccCcCCCCcCcccCC---CccCHHHHHHHHHHHHHHHhhhhccCCceeEEEECCCcc-ccC---CHHHHHHHHHHHH
Confidence 579999999999865311 111100 12333333 322222 2356677766432 222 2344555555554
Q ss_pred h---cCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCc-eeecEEeec-
Q 022946 170 D---MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGL- 243 (289)
Q Consensus 170 ~---~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~~i~Gl- 243 (289)
. ..+.+.+++..++.+.++.|+++|++++++|+||+ +++++.+.+.++.++++++++.+++.|+. ++.++|+|+
T Consensus 86 ~~~~~eit~E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~~~~~~~~ai~~~~~~g~~~v~~Dli~GlP 165 (370)
T PRK06294 86 APHATEITLEANPENLSESYIRALALTGINRISIGVQTFDDPLLKLLGRTHSSSKAIDAVQECSEHGFSNLSIDLIYGLP 165 (370)
T ss_pred hCCCCeEEEEeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCC
Confidence 2 23445677888999999999999999999999999 99999999999999999999999999996 999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCC
Q 022946 244 GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ 283 (289)
Q Consensus 244 get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~ 283 (289)
|+|.+++.++++.+.++ +++.+.++.+.|.||||++..
T Consensus 166 gqt~~~~~~~l~~~~~l--~~~~is~y~l~~~~gT~l~~~ 203 (370)
T PRK06294 166 TQSLSDFIVDLHQAITL--PITHISLYNLTIDPHTSFYKH 203 (370)
T ss_pred CCCHHHHHHHHHHHHcc--CCCeEEEeeeEecCCChHHHH
Confidence 99999999999999999 699999999999999998763
|
|
| >TIGR01212 radical SAM protein, TIGR01212 family | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.9e-21 Score=165.79 Aligned_cols=199 Identities=21% Similarity=0.268 Sum_probs=144.1
Q ss_pred HHHHhhhCCCeeEEeEeeccccCCCCc--------CCCCCCCCCCCCCCCC--CcCCCCH-HHHHHHHHHHHHcCCcEEE
Q 022946 75 QVHRHAHNFREVQQCTLLSIKTGGCSE--------DCSYCPQSSRYDTGVK--GQKLMTK-DAVMQAAQKAKEAGSTRFC 143 (289)
Q Consensus 75 ~~~r~~~~g~~~~~~~~i~~~t~~C~~--------~C~fC~~~~~~~~~~~--~~~~~~~-eei~~~~~~~~~~g~~~i~ 143 (289)
...|+++ |.+|+=- .|+. .-.||+ .|.||+..... .... ..+..++ +++.+.++.....+...+.
T Consensus 7 ~~~~~~~-g~~v~k~-~~~~-g~~cpnrdg~~~~~gC~FC~~~~~~-~~~~~~~~~~~~i~~qi~~~~~~~~~~~~~~iy 82 (302)
T TIGR01212 7 DYLKERY-GQKVFKI-TLHG-GFSCPNRDGTKGRGGCTFCNDASRP-IFADEYTQARIPIKEQIKKQMKKYKKDKKFIAY 82 (302)
T ss_pred HHHHHHc-CCceEEe-ecCC-CCCCCCCCCCCCCCCcccCCCCCCc-cccccccccCCCHHHHHHHHHHHhhccCEEEEE
Confidence 3345564 7777632 2554 778998 69999875321 1110 1122343 3344444433333322356
Q ss_pred EecccCCCCCCchhHHHHHHHHHHHHhc----CceEEEeCCCCCHHHHHHHH---HcCC-CeEecCCCch-HHHHhccCC
Q 022946 144 MGAAWRDTIGRKTNFNQILEYVKDIRDM----GMEVCCTLGMLEKHQAIELK---KAGL-TAYNHNLDTS-REFYSKIIT 214 (289)
Q Consensus 144 i~~~~~~~~ge~~~~~~l~e~i~~ik~~----~~~i~~~~g~l~~e~l~~L~---~aG~-~~v~i~let~-~~~~~~i~~ 214 (289)
|+|+. ++.. ..+.+.++++.+++. ++.+.+++..++++.++.|+ ++|+ .++.+|+||. +++++.+++
T Consensus 83 f~ggt-~t~l---~~~~L~~l~~~i~~~~~~~~isi~trpd~l~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~R 158 (302)
T TIGR01212 83 FQAYT-NTYA---PVEVLKEMYEQALSYDDVVGLSVGTRPDCVPDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKINR 158 (302)
T ss_pred EECCC-cCCC---CHHHHHHHHHHHhCCCCEEEEEEEecCCcCCHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHHcC
Confidence 66543 4433 445666666665533 34455667788888776666 4599 5799999999 999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCceeecEEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCC
Q 022946 215 TRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ 283 (289)
Q Consensus 215 ~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~ 283 (289)
+++.++++++++.++++|+.+++++|+|+ |||.+++.++++++.++ +++.+.++.+.|.|||||++.
T Consensus 159 g~t~~~~~~ai~~l~~~gi~v~~~lI~GlPget~e~~~~t~~~l~~l--~~d~i~i~~l~~~pgT~L~~~ 226 (302)
T TIGR01212 159 GHDFACYVDAVKRARKRGIKVCSHVILGLPGEDREEMMETAKIVSLL--DVDGIKIHPLHVVKGTKMAKM 226 (302)
T ss_pred cChHHHHHHHHHHHHHcCCEEEEeEEECCCCCCHHHHHHHHHHHHhc--CCCEEEEEEEEecCCCHHHHH
Confidence 99999999999999999999999999999 99999999999999999 689999999999999999874
|
This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain. |
| >PRK08898 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.6e-21 Score=171.97 Aligned_cols=186 Identities=12% Similarity=0.146 Sum_probs=140.1
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcC-CCCHHHHHHHHHHHHH----cCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQK-LMTKDAVMQAAQKAKE----AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD 170 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~-~~~~eei~~~~~~~~~----~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~ 170 (289)
-+.|..+|.||.+.+.......... ..-.+.+.++++.... ..++.|.|+||... .-.+..+.++++.++..-.
T Consensus 26 IPFC~~~C~yC~f~~~~~~~~~~~~~~~Y~~~l~~ei~~~~~~~~~~~i~siy~GGGTPs-~L~~~~L~~ll~~i~~~~~ 104 (394)
T PRK08898 26 FPWCVRKCPYCDFNSHEWKDGGAIPEAAYLDALRADLEQALPLVWGRQVHTVFIGGGTPS-LLSAAGLDRLLSDVRALLP 104 (394)
T ss_pred eCCccCcCCCCCCcccccCCCCccCHHHHHHHHHHHHHHHHHhccCCceeEEEECCCCcC-CCCHHHHHHHHHHHHHhCC
Confidence 5799999999998754221110000 0124556666654432 23667877765432 2223344444444433221
Q ss_pred c----CceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec-C
Q 022946 171 M----GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-G 244 (289)
Q Consensus 171 ~----~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-g 244 (289)
. .+.+.++++.++.+.++.|+++|++++++|+||+ +++++.+.+.++.++..++++.+++.+..++.++|+|+ |
T Consensus 105 ~~~~~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPg 184 (394)
T PRK08898 105 LDPDAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHLKALGRIHDGAEARAAIEIAAKHFDNFNLDLMYALPG 184 (394)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCCceEEEEEcCCCC
Confidence 1 2345667788999999999999999999999999 99999999999999999999999998888999999999 9
Q ss_pred CCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCC
Q 022946 245 EAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284 (289)
Q Consensus 245 et~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~ 284 (289)
+|.+++.++++.+.++ +++.+.++.|.+.|||||++..
T Consensus 185 qt~~~~~~~l~~~~~l--~p~~is~y~l~~~~gT~l~~~~ 222 (394)
T PRK08898 185 QTLDEALADVETALAF--GPPHLSLYHLTLEPNTLFAKFP 222 (394)
T ss_pred CCHHHHHHHHHHHHhc--CCCEEEEeeeEECCCChhhhcc
Confidence 9999999999999999 6999999999999999998753
|
|
| >TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-20 Score=166.54 Aligned_cols=187 Identities=20% Similarity=0.272 Sum_probs=149.4
Q ss_pred CCeeEEeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHH
Q 022946 83 FREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQIL 162 (289)
Q Consensus 83 g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~ 162 (289)
|+.+..- .+++ |++||++|.||...............++.+++.+.++.+.+.|++.|.|+| |||+...++.
T Consensus 6 gr~~~~l-~i~v-T~~CNl~C~yC~~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gv~~V~ltG------GEPll~~~l~ 77 (334)
T TIGR02666 6 GRRIDYL-RISV-TDRCNLRCVYCMPEGGGLDFLPKEELLTFEEIERLVRAFVGLGVRKVRLTG------GEPLLRKDLV 77 (334)
T ss_pred CCccCeE-EEEe-cCccCcCCCCCCCCcCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEEC------ccccccCCHH
Confidence 6665432 3566 999999999998763111112234558999999999999999999999987 5666667788
Q ss_pred HHHHHHHh-cCc-eE-EEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCC-CCCHHHHHHHHHHHHHcCCc-ee
Q 022946 163 EYVKDIRD-MGM-EV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT-TRSYDERLETLKHVREAGIN-VC 236 (289)
Q Consensus 163 e~i~~ik~-~~~-~i-~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~-~~~~~~~~~~i~~~~~~Gi~-v~ 236 (289)
++++.+++ .++ .+ .+|||.+..+.++.|+++|++.|.+|+|+. ++.++.+.+ +.++++++++|+.++++|+. +.
T Consensus 78 ~li~~i~~~~gi~~v~itTNG~ll~~~~~~L~~~gl~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~ 157 (334)
T TIGR02666 78 ELVARLAALPGIEDIALTTNGLLLARHAKDLKEAGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVK 157 (334)
T ss_pred HHHHHHHhcCCCCeEEEEeCchhHHHHHHHHHHcCCCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEE
Confidence 88888775 466 44 457898878899999999999999999999 999999985 56999999999999999997 88
Q ss_pred ecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCC
Q 022946 237 SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 280 (289)
Q Consensus 237 ~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl 280 (289)
..+++.-|.+.+++.++++++.+++ . .+.+..|+|..++.-
T Consensus 158 in~vv~~g~n~~ei~~l~~~~~~~g--v-~~~~ie~mp~~~~~~ 198 (334)
T TIGR02666 158 LNTVVMRGVNDDEIVDLAEFAKERG--V-TLRFIELMPLGEGNG 198 (334)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHhcC--C-eEEEEeccCCCCCcc
Confidence 7776655889999999999999983 4 477888899877643
|
The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. |
| >PRK08208 coproporphyrinogen III oxidase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.4e-21 Score=173.91 Aligned_cols=185 Identities=16% Similarity=0.222 Sum_probs=142.2
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc----CCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA----GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM 171 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~----g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~ 171 (289)
.+.|+.+|.||.+....... ........+.++++++...+. .+..+.|+||. ++.-.+..+.++++.++.....
T Consensus 46 IPFC~~~C~yC~~~~~~~~~-~~~~~~y~~~L~~Ei~~~~~~~~~~~i~~i~~GGGT-Ps~l~~~~l~~Ll~~i~~~~~~ 123 (430)
T PRK08208 46 IPFCEMRCGFCNLFTRTGAD-AEFIDSYLDALIRQAEQVAEALAPARFASFAVGGGT-PTLLNAAELEKLFDSVERVLGV 123 (430)
T ss_pred eCCccCcCCCCCCccccCCc-cchHHHHHHHHHHHHHHHHHHcCCCceeEEEEcCCc-cccCCHHHHHHHHHHHHHhCCC
Confidence 47899999999987542211 011112356777777655432 25567776543 3222234456666666543322
Q ss_pred ---Cce--EEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCc-eeecEEeec-
Q 022946 172 ---GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGL- 243 (289)
Q Consensus 172 ---~~~--i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~~i~Gl- 243 (289)
+.+ +.+++..++++.++.|+++|+++|++|+||+ +++++.+.++++.++++++++.++++|+. ++.++|+|+
T Consensus 124 ~~~~~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP 203 (430)
T PRK08208 124 DLGNIPKSVETSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNIDLIYGIP 203 (430)
T ss_pred CCCCceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCC
Confidence 233 4566778999999999999999999999999 99999999999999999999999999997 689999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCC
Q 022946 244 GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284 (289)
Q Consensus 244 get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~ 284 (289)
++|.+++.++++++.++ +++.+.++.+.+.|||++....
T Consensus 204 ~qt~e~~~~~l~~~~~l--~~~~is~y~L~~~~~T~l~~~~ 242 (430)
T PRK08208 204 GQTHASWMESLDQALVY--RPEELFLYPLYVRPLTGLGRRA 242 (430)
T ss_pred CCCHHHHHHHHHHHHhC--CCCEEEEccccccCCCccchhc
Confidence 99999999999999999 6999999999999999998754
|
|
| >COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-20 Score=161.06 Aligned_cols=183 Identities=22% Similarity=0.327 Sum_probs=151.5
Q ss_pred CCeeEEeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHH
Q 022946 83 FREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQIL 162 (289)
Q Consensus 83 g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~ 162 (289)
|..+..-. +++ |..||++|.||.....+ ....+...+++|||...++.+.+.|++.|-|+| |||+...++.
T Consensus 7 gR~~~~LR-iSv-TdrCNfrC~YCm~eg~~-~~~~~~~~Ls~eei~~~~~~~~~~Gv~kvRlTG------GEPllR~dl~ 77 (322)
T COG2896 7 GRPVRYLR-ISV-TDRCNFRCTYCMPEGPL-AFLPKEELLSLEEIRRLVRAFAELGVEKVRLTG------GEPLLRKDLD 77 (322)
T ss_pred CCEeceEE-EEE-ecCcCCcccccCCCCCc-ccCcccccCCHHHHHHHHHHHHHcCcceEEEeC------CCchhhcCHH
Confidence 55554322 555 99999999999875312 222333468999999999999999999999987 7899999999
Q ss_pred HHHHHHHhcCce-E-EEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCc-eeec
Q 022946 163 EYVKDIRDMGME-V-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSG 238 (289)
Q Consensus 163 e~i~~ik~~~~~-i-~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~ 238 (289)
++++.+++.++. + .+|||.+....+..|++||+++|++|++|. ++.|.++.+...++++++.|+.+.++|+. |..+
T Consensus 78 eIi~~l~~~~~~~islTTNG~~L~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN 157 (322)
T COG2896 78 EIIARLARLGIRDLSLTTNGVLLARRAADLKEAGLDRVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLN 157 (322)
T ss_pred HHHHHHhhcccceEEEecchhhHHHHHHHHHHcCCcEEEeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEE
Confidence 999999876543 3 466999999999999999999999999999 99999999877899999999999999995 7777
Q ss_pred EEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCC
Q 022946 239 GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 277 (289)
Q Consensus 239 ~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pg 277 (289)
+++-=|-+.+++.+++++++..+ ..+.|..|+|...
T Consensus 158 ~Vv~kgvNd~ei~~l~e~~~~~~---~~lrfIE~m~~g~ 193 (322)
T COG2896 158 TVLMKGVNDDEIEDLLEFAKERG---AQLRFIELMPLGE 193 (322)
T ss_pred EEEecCCCHHHHHHHHHHHhhcC---CceEEEEEeecCc
Confidence 76633678899999999999983 3788888888764
|
|
| >PRK06582 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=170.57 Aligned_cols=183 Identities=14% Similarity=0.145 Sum_probs=139.2
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH----cCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE----AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM 171 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~----~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~ 171 (289)
-+.|..+|.||.+....... .....-.+.+.++++...+ ..++.|.|+||.. +.-.+..+..+++.++.....
T Consensus 18 iPFC~~~C~yC~f~~~~~~~--~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTP-s~l~~~~l~~ll~~i~~~~~~ 94 (390)
T PRK06582 18 WPFCLSKCPYCDFNSHVAST--IDHNQWLKSYEKEIEYFKDIIQNKYIKSIFFGGGTP-SLMNPVIVEGIINKISNLAII 94 (390)
T ss_pred eCCCcCcCCCCCCeeccCCC--CCHHHHHHHHHHHHHHHHHHccCCceeEEEECCCcc-ccCCHHHHHHHHHHHHHhCCC
Confidence 58999999999987532111 1000012334444443332 2367787776543 222334445555555443211
Q ss_pred ----CceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec-CC
Q 022946 172 ----GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GE 245 (289)
Q Consensus 172 ----~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-ge 245 (289)
.+.+.+++..++.+.++.|+++|+++|++|+||+ +++++.+.+.++.++.+++++.+++.+..++.++|+|+ |+
T Consensus 95 ~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~L~~lgR~h~~~~~~~ai~~~~~~~~~v~~DlI~GlPgq 174 (390)
T PRK06582 95 DNQTEITLETNPTSFETEKFKAFKLAGINRVSIGVQSLKEDDLKKLGRTHDCMQAIKTIEAANTIFPRVSFDLIYARSGQ 174 (390)
T ss_pred CCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCCcEEEEeecCCCCC
Confidence 2445677888999999999999999999999999 99999999999999999999999999778999999999 99
Q ss_pred CHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCC
Q 022946 246 AEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ 283 (289)
Q Consensus 246 t~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~ 283 (289)
|.+++.++++.+.++ +|+.+.++.+.+.|||||++.
T Consensus 175 t~e~~~~~l~~~~~l--~p~his~y~L~i~~gT~l~~~ 210 (390)
T PRK06582 175 TLKDWQEELKQAMQL--ATSHISLYQLTIEKGTPFYKL 210 (390)
T ss_pred CHHHHHHHHHHHHhc--CCCEEEEecCEEccCChHHHH
Confidence 999999999999999 699999999999999999763
|
|
| >TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.6e-20 Score=161.83 Aligned_cols=181 Identities=24% Similarity=0.345 Sum_probs=146.6
Q ss_pred CCeeEEeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHH
Q 022946 83 FREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQIL 162 (289)
Q Consensus 83 g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~ 162 (289)
|+.+... .+++ |++||++|.||...... ......++.|++.+.++.+...|++.|.|+| |||....++.
T Consensus 6 gr~~~~l-~i~v-T~~CNl~C~yC~~~~~~---~~~~~~ls~eei~~~i~~~~~~gi~~I~~tG------GEPll~~~l~ 74 (302)
T TIGR02668 6 GRPVTSL-RISV-TDRCNLSCFYCHMEGED---RSGGNELSPEEIERIVRVASEFGVRKVKITG------GEPLLRKDLI 74 (302)
T ss_pred CCccCeE-EEEE-cccccCCCCCCCccccC---CCccCcCCHHHHHHHHHHHHHcCCCEEEEEC------cccccccCHH
Confidence 5555332 3566 99999999999875321 1223458999999999888889999999976 5676667788
Q ss_pred HHHHHHHhcCc-eE-EEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCc-eeec
Q 022946 163 EYVKDIRDMGM-EV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSG 238 (289)
Q Consensus 163 e~i~~ik~~~~-~i-~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~ 238 (289)
++++.+++.++ .+ .+|||.+..+.++.|+++|++.|.+|+|+. ++.++.+.++.++++++++|+.+++.|+. +...
T Consensus 75 ~iv~~l~~~g~~~v~i~TNG~ll~~~~~~l~~~g~~~v~iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~ 154 (302)
T TIGR02668 75 EIIRRIKDYGIKDVSMTTNGILLEKLAKKLKEAGLDRVNVSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLN 154 (302)
T ss_pred HHHHHHHhCCCceEEEEcCchHHHHHHHHHHHCCCCEEEEEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEE
Confidence 88888887776 44 467898778899999999999999999999 99999999888999999999999999986 7776
Q ss_pred EEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCC
Q 022946 239 GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 277 (289)
Q Consensus 239 ~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pg 277 (289)
+++--|++.+++.++++++.+++ . .+.+..++|...
T Consensus 155 ~v~~~g~n~~ei~~~~~~~~~~g--~-~~~~ie~~p~~~ 190 (302)
T TIGR02668 155 MVVLKGINDNEIPDMVEFAAEGG--A-ILQLIELMPPGE 190 (302)
T ss_pred EEEeCCCCHHHHHHHHHHHHhcC--C-EEEEEEEeECCC
Confidence 66544799999999999999983 3 477888888653
|
This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666). |
| >TIGR01210 conserved hypothetical protein TIGR01210 | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=159.47 Aligned_cols=181 Identities=17% Similarity=0.189 Sum_probs=134.5
Q ss_pred EeeccccCCCCc----CCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-cCCcE----E-EEeccc-CCCCCCchhH
Q 022946 90 TLLSIKTGGCSE----DCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTR----F-CMGAAW-RDTIGRKTNF 158 (289)
Q Consensus 90 ~~i~~~t~~C~~----~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~g~~~----i-~i~~~~-~~~~ge~~~~ 158 (289)
.+|.. |+||++ +|.||++... .++..+++.|.+.++.+.+ .+... + .+.++. .++.- ...
T Consensus 17 ~~i~~-srGC~~~~~g~C~FC~~~~~------~~r~~s~e~i~~~i~~~~~~~~~~~~~~~ikif~sgsf~D~~~--~~~ 87 (313)
T TIGR01210 17 TIILR-TRGCYWAREGGCYMCGYLAD------SSPEVTEENLINQFDEAIEKYKEKIKDFVIKIFTSGSFLDDRE--VPK 87 (313)
T ss_pred EEEEe-CCCCCCCCCCcCccCCCCCC------CCCCCChhHHHHHHHHHHHHhhcccccEEEEEecCCCcCCcCc--CCH
Confidence 44555 999999 5999976532 1123588999999887764 33221 1 233321 11110 123
Q ss_pred HHHHHHHHHHHhc----CceEEEeCCCCCHHHHHHHHHcCCC-eEecCCCch-HHHHh-ccCCCCCHHHHHHHHHHHHHc
Q 022946 159 NQILEYVKDIRDM----GMEVCCTLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYS-KIITTRSYDERLETLKHVREA 231 (289)
Q Consensus 159 ~~l~e~i~~ik~~----~~~i~~~~g~l~~e~l~~L~~aG~~-~v~i~let~-~~~~~-~i~~~~~~~~~~~~i~~~~~~ 231 (289)
+.+.++++.+++. .+.+.++...++++.++.|+++|++ +|.+|+||+ +++++ .++++++.++++++++.++++
T Consensus 88 ~~~~~i~~~l~~~~~~~~i~~esrpd~i~~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~t~~~~~~ai~~~~~~ 167 (313)
T TIGR01210 88 ETRNYIFEKIAQRDNLKEVVVESRPEFIDEEKLEELRKIGVNVEVAVGLETANDRIREKSINKGSTFEDFIRAAELARKY 167 (313)
T ss_pred HHHHHHHHHHHhcCCcceEEEEeCCCcCCHHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCCCHHHHHHHHHHHHHc
Confidence 3444555555433 2345566778999999999999998 899999999 99995 799999999999999999999
Q ss_pred CCceeecEEeec-C----CCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 232 GINVCSGGIIGL-G----EAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 232 Gi~v~~~~i~Gl-g----et~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
|+.+..++|+|+ + |+.+++.++++++..+ + +.+.++++.|.|||+|+.
T Consensus 168 Gi~v~~~~i~G~P~~se~ea~ed~~~ti~~~~~l--~-~~vs~~~l~v~~gT~l~~ 220 (313)
T TIGR01210 168 GAGVKAYLLFKPPFLSEKEAIADMISSIRKCIPV--T-DTVSINPTNVQKGTLVEF 220 (313)
T ss_pred CCcEEEEEEecCCCCChhhhHHHHHHHHHHHHhc--C-CcEEEECCEEeCCCHHHH
Confidence 999999999998 5 4556777888888888 5 899999999999998764
|
This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes. |
| >PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=161.95 Aligned_cols=184 Identities=18% Similarity=0.265 Sum_probs=146.3
Q ss_pred CCeeEEeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHH
Q 022946 83 FREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQIL 162 (289)
Q Consensus 83 g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~ 162 (289)
|+.+..- .|++ |.+||++|.||...... ........++.+++.+.++.+.+.|++.|.|+| |||....++.
T Consensus 13 ~r~~~~l-~i~v-T~~Cnl~C~yC~~~~~~-~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tG------GEPll~~~l~ 83 (331)
T PRK00164 13 GRKFTYL-RISV-TDRCNFRCTYCMPEGYL-PFLPKEELLSLEEIERLVRAFVALGVRKVRLTG------GEPLLRKDLE 83 (331)
T ss_pred CCccCeE-EEEE-cCCcCcCCCCCCCccCC-CCCCccccCCHHHHHHHHHHHHHCCCCEEEEEC------CCCcCccCHH
Confidence 5555432 3566 99999999999875321 112334568999999999998889999999987 5566667788
Q ss_pred HHHHHHHhc-C-ceE-EEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCC-ceee
Q 022946 163 EYVKDIRDM-G-MEV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGI-NVCS 237 (289)
Q Consensus 163 e~i~~ik~~-~-~~i-~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi-~v~~ 237 (289)
++++.+++. + ..+ .+|||.+..+.++.|+++|++.|.+|+++. ++.++.+++..++++++++|+.+++.|+ .+..
T Consensus 84 ~li~~i~~~~~~~~i~itTNG~ll~~~~~~L~~agl~~i~ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i 163 (331)
T PRK00164 84 DIIAALAALPGIRDLALTTNGYLLARRAAALKDAGLDRVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKV 163 (331)
T ss_pred HHHHHHHhcCCCceEEEEcCchhHHHHHHHHHHcCCCEEEEEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEE
Confidence 888888754 2 333 467888777889999999999999999999 9999999988899999999999999998 7777
Q ss_pred cEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCC
Q 022946 238 GGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT 278 (289)
Q Consensus 238 ~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgT 278 (289)
.+++--|.+.+++.++++++.+++ . .+.+..|+|.++.
T Consensus 164 ~~vv~~g~n~~ei~~l~~~~~~~g--v-~v~~ie~~p~~~~ 201 (331)
T PRK00164 164 NAVLMKGVNDDEIPDLLEWAKDRG--I-QLRFIELMPTGEG 201 (331)
T ss_pred EEEEECCCCHHHHHHHHHHHHhCC--C-eEEEEEeeECCCC
Confidence 665533788899999999999883 3 5778888887755
|
|
| >TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=168.30 Aligned_cols=176 Identities=18% Similarity=0.216 Sum_probs=136.7
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-----cCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-----AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD 170 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-----~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~ 170 (289)
-+.|+.+|.||.+....... ........+.++++++.+.+ .++..|.|+||.... - ..+.+.++++.+++
T Consensus 56 iPFC~~~C~yC~~~~~~~~~-~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~I~fgGGtP~~-l---~~~~l~~ll~~i~~ 130 (455)
T TIGR00538 56 IPFCHKACYFCGCNVIITRQ-KHKADPYLDALEKEIALVAPLFDGNRHVSQLHWGGGTPTY-L---SPEQISRLMKLIRE 130 (455)
T ss_pred eCCccCcCCCCCCCccCCCC-cchHHHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCcCC-C---CHHHHHHHHHHHHH
Confidence 57899999999987543211 11111246777777776532 367778887743221 1 34556666665553
Q ss_pred -----cC--ceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCc-eeecEEe
Q 022946 171 -----MG--MEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGII 241 (289)
Q Consensus 171 -----~~--~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~~i~ 241 (289)
.+ +.+.+++..++++.++.|+++|+++|++|+||+ +++++.+++.++.++++++++.++++|+. ++.++|+
T Consensus 131 ~~~~~~~~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~ 210 (455)
T TIGR00538 131 NFPFNADAEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREAGFTSINIDLIY 210 (455)
T ss_pred hCCCCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEe
Confidence 12 334556677999999999999999999999999 99999999999999999999999999996 8999999
Q ss_pred ec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCC
Q 022946 242 GL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT 278 (289)
Q Consensus 242 Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgT 278 (289)
|+ |+|.+++.++++++.++ +++.+.++.+.+.|++
T Consensus 211 GlPgqt~e~~~~tl~~~~~l--~~~~is~y~L~~~p~~ 246 (455)
T TIGR00538 211 GLPKQTKESFAKTLEKVAEL--NPDRLAVFNYAHVPWV 246 (455)
T ss_pred eCCCCCHHHHHHHHHHHHhc--CCCEEEEecCccccch
Confidence 99 99999999999999999 6899999999777753
|
This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein. |
| >PRK13347 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.6e-19 Score=165.44 Aligned_cols=175 Identities=14% Similarity=0.159 Sum_probs=132.1
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-----cCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-----AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD 170 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-----~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~ 170 (289)
.+.|+.+|.||.+.+..... ......-.+.++++++.... .++..|.|+||..+. ...+++.++++.+++
T Consensus 57 IPfC~~~C~yC~~~~~~~~~-~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~fgGGTPs~----l~~~~l~~ll~~i~~ 131 (453)
T PRK13347 57 VPFCRSLCWFCGCNTIITQR-DAPVEAYVAALIREIRLVAASLPQRRRVSQLHWGGGTPTI----LNPDQFERLMAALRD 131 (453)
T ss_pred eCCccccCCCCCCcCcCccc-cchHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCccccc----CCHHHHHHHHHHHHH
Confidence 47899999999987532111 01000124566666654432 245667777643221 123556666655553
Q ss_pred -----cCce--EEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCc-eeecEEe
Q 022946 171 -----MGME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGII 241 (289)
Q Consensus 171 -----~~~~--i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~~i~ 241 (289)
.+.+ +.+++..++++.++.|+++|+++|++|+||+ +++++.+++.++++++.++++.++++|+. ++.++|+
T Consensus 132 ~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~ 211 (453)
T PRK13347 132 AFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIY 211 (453)
T ss_pred hCCCCCCceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEE
Confidence 1233 4566778999999999999999999999999 99999999999999999999999999996 8999999
Q ss_pred ec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCC
Q 022946 242 GL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 277 (289)
Q Consensus 242 Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pg 277 (289)
|+ |+|.+++.++++++.++ +++.+.++.|...|+
T Consensus 212 GlPgqt~e~~~~tl~~~~~l--~p~~i~~y~l~~~p~ 246 (453)
T PRK13347 212 GLPHQTVESFRETLDKVIAL--SPDRIAVFGYAHVPS 246 (453)
T ss_pred eCCCCCHHHHHHHHHHHHhc--CCCEEEEeccccccc
Confidence 99 99999999999999999 699999998875444
|
|
| >PRK09249 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.1e-19 Score=165.02 Aligned_cols=176 Identities=15% Similarity=0.169 Sum_probs=134.7
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-----cCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-----AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD 170 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-----~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~ 170 (289)
-+.|+.+|.||.+....... ........+.++++++...+ .+++.+.|+||.. +.- ..+++.++++.+++
T Consensus 56 IPFC~~~C~yC~~~~~~~~~-~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~~gGGtP-s~l---~~~~l~~ll~~l~~ 130 (453)
T PRK09249 56 IPFCRSLCYYCGCNKIITRD-HEKADPYLDALEKEIALVAALLGPGRPVSQLHWGGGTP-TFL---SPEQLRRLMALLRE 130 (453)
T ss_pred eCCccccCCCCCCcccCCCC-cchHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCccc-ccC---CHHHHHHHHHHHHH
Confidence 57899999999987532211 11111234666777665443 2466777766432 211 24566666666553
Q ss_pred c-----Cce--EEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCC-ceeecEEe
Q 022946 171 M-----GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGI-NVCSGGII 241 (289)
Q Consensus 171 ~-----~~~--i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi-~v~~~~i~ 241 (289)
. +.+ +.+++..++++.++.|+++|+++|++|+||. +++++.+++.+++++++++++.++++|+ .++.++|+
T Consensus 131 ~~~~~~~~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~ 210 (453)
T PRK09249 131 HFNFAPDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQKAVNRIQPFEFTFALVEAARELGFTSINIDLIY 210 (453)
T ss_pred hCCCCCCCEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 2 233 4566777999999999999999999999999 9999999999999999999999999999 69999999
Q ss_pred ec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCC
Q 022946 242 GL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT 278 (289)
Q Consensus 242 Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgT 278 (289)
|+ |+|.+++.++++++.++ +++.+.++.+.+.|++
T Consensus 211 GlPgqt~e~~~~~l~~~~~l--~~~~i~~y~l~~~p~~ 246 (453)
T PRK09249 211 GLPKQTPESFARTLEKVLEL--RPDRLAVFNYAHVPWL 246 (453)
T ss_pred cCCCCCHHHHHHHHHHHHhc--CCCEEEEccCccchhh
Confidence 99 99999999999999999 6999999999866654
|
|
| >PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-19 Score=143.92 Aligned_cols=156 Identities=25% Similarity=0.435 Sum_probs=119.0
Q ss_pred ccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHH-HHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-
Q 022946 93 SIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKA-KEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD- 170 (289)
Q Consensus 93 ~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~-~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~- 170 (289)
++ |++||++|.||...... .......++++++++.++.+ ...|...+.++| |+|.....+.+.+..+.+
T Consensus 2 ~~-~~~C~~~C~fC~~~~~~--~~~~~~~~~~e~i~~~~~~~~~~~~~~~i~~~~------gep~~~~~~~~~~~~~~~~ 72 (166)
T PF04055_consen 2 ET-TRGCNLNCSFCYYPRSR--RKNKPREMSPEEILEEIKELKQDKGVKEIFFGG------GEPTLHPDFIELLELLRKI 72 (166)
T ss_dssp EE-ESEESS--TTTSTTTTC--CTCGCEECHHHHHHHHHHHHHHHTTHEEEEEES------STGGGSCHHHHHHHHHHHC
T ss_pred EE-CcCcCccCCCCCCCccC--CCcccccCCHHHHHHHHHHHhHhcCCcEEEEee------cCCCcchhHHHHHHHHHHh
Confidence 44 89999999999987531 11233448999999999999 588866666654 445555556666655553
Q ss_pred --cCceE-EEeCCC-CCHHHHHHHHHcCCCeEecCCCch-HH-HHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec-
Q 022946 171 --MGMEV-CCTLGM-LEKHQAIELKKAGLTAYNHNLDTS-RE-FYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL- 243 (289)
Q Consensus 171 --~~~~i-~~~~g~-l~~e~l~~L~~aG~~~v~i~let~-~~-~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl- 243 (289)
.++.+ ..++|. .+.+.++.|+++|++.+.+++++. ++ +.+.++++.++++++++++.++++|+.....+++|+
T Consensus 73 ~~~~~~i~~~t~~~~~~~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~i~~~~ 152 (166)
T PF04055_consen 73 KKRGIRISINTNGTLLDEELLDELKKLGVDRIRISLESLDEESVLRIINRGKSFERVLEALERLKEAGIPRVIIFIVGLP 152 (166)
T ss_dssp TCTTEEEEEEEESTTHCHHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHHTTSETEEEEEEEBT
T ss_pred hccccceeeeccccchhHHHHHHHHhcCccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeC
Confidence 35554 234554 459999999999999999999999 88 888888888999999999999999998666677777
Q ss_pred CCCHHHHHHHHHHH
Q 022946 244 GEAEEDRVGLLHTL 257 (289)
Q Consensus 244 get~ed~~~~l~~l 257 (289)
|+|.+|+.++++++
T Consensus 153 ~~~~~e~~~~~~~i 166 (166)
T PF04055_consen 153 GENDEEIEETIRFI 166 (166)
T ss_dssp TTSHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCcC
Confidence 99999999999875
|
Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A .... |
| >PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.2e-19 Score=158.72 Aligned_cols=173 Identities=17% Similarity=0.311 Sum_probs=141.7
Q ss_pred eEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHH
Q 022946 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDI 168 (289)
Q Consensus 89 ~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~i 168 (289)
...+++ |+.||++|.||+...... .....++.+++.+.++.+.+.|+..|.|+| |||+..+++.++++.+
T Consensus 17 ~l~i~i-T~~CNl~C~~C~~~~~~~---~~~~~~~~e~~~~ii~~~~~~g~~~v~~~G------GEPll~~~~~~il~~~ 86 (378)
T PRK05301 17 WLLAEL-TYRCPLQCPYCSNPLDLA---RHGAELSTEEWIRVLREARALGALQLHFSG------GEPLLRKDLEELVAHA 86 (378)
T ss_pred EEEEEe-cCccCcCCCCCCCccccc---cccCCCCHHHHHHHHHHHHHcCCcEEEEEC------CccCCchhHHHHHHHH
Confidence 344666 999999999998753211 123448999999999999899998898876 5677778889999999
Q ss_pred HhcCceE-EEeCCC-CCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCC-CCHHHHHHHHHHHHHcCCceeecEEeecC
Q 022946 169 RDMGMEV-CCTLGM-LEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITT-RSYDERLETLKHVREAGINVCSGGIIGLG 244 (289)
Q Consensus 169 k~~~~~i-~~~~g~-l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~-~~~~~~~~~i~~~~~~Gi~v~~~~i~Glg 244 (289)
++.++.+ .+|||. ++++.++.|+++|++.|.+|+|+. +++++.+++. ++|+.++++++.+++.|+.+...+++ ..
T Consensus 87 ~~~g~~~~i~TNG~ll~~~~~~~L~~~g~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~vv-~~ 165 (378)
T PRK05301 87 RELGLYTNLITSGVGLTEARLAALKDAGLDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTLNAVI-HR 165 (378)
T ss_pred HHcCCcEEEECCCccCCHHHHHHHHHcCCCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEEEEEe-ec
Confidence 8777653 456776 788999999999999999999999 9999998876 48999999999999999987766554 37
Q ss_pred CCHHHHHHHHHHHhcCCCCCCeeeecccee
Q 022946 245 EAEEDRVGLLHTLATLPTHPESVPINALLA 274 (289)
Q Consensus 245 et~ed~~~~l~~l~~l~~~~~~v~i~~~~p 274 (289)
.+.+++.++++++.++ +++.+.+..+.+
T Consensus 166 ~N~~~i~~~~~~~~~l--gv~~i~~~~~~~ 193 (378)
T PRK05301 166 HNIDQIPRIIELAVEL--GADRLELANTQY 193 (378)
T ss_pred CCHHHHHHHHHHHHHc--CCCEEEEecccc
Confidence 8899999999999999 578887766544
|
|
| >COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.6e-19 Score=160.01 Aligned_cols=186 Identities=18% Similarity=0.290 Sum_probs=144.7
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc-----CCcEEEEecccCCCCCCchhHHHHHHHHHHHHh
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-----GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD 170 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~-----g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~ 170 (289)
.+.|...|.||.+++.......... .-.+.+.++++..... .++.|+|+||.. +.-.+..++.+++.++..-.
T Consensus 41 iPFC~~~C~YC~fn~~~~~~~~~~~-~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GGGTP-slL~~~~l~~ll~~l~~~~~ 118 (416)
T COG0635 41 IPFCVSKCPYCDFNSHVTKRGQPVD-EYLDALLEEIELVAALLGGQREVKTIYFGGGTP-SLLSPEQLERLLKALRELFN 118 (416)
T ss_pred cccccccCCCCCCeeeccCCCChHH-HHHHHHHHHHHHHHhhcCCCCeEEEEEECCCcc-ccCCHHHHHHHHHHHHHhcc
Confidence 5899999999999864332110000 0123444455444332 256677776543 33345666777777765432
Q ss_pred -cC--ce--EEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCc-eeecEEeec
Q 022946 171 -MG--ME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGL 243 (289)
Q Consensus 171 -~~--~~--i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~~i~Gl 243 (289)
.. .+ +.++++.++.+.++.|+++|+++|++|+|++ +++++.+.+.++.++..++++.+++.|+. ++.++|+|+
T Consensus 119 ~~~~~~EitiE~nP~~~~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIygl 198 (416)
T COG0635 119 DLDPDAEITIEANPGTVEAEKFKALKEAGVNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGL 198 (416)
T ss_pred cCCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC
Confidence 21 33 5667899999999999999999999999999 99999999999999999999999999996 999999999
Q ss_pred -CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCCC
Q 022946 244 -GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKL 285 (289)
Q Consensus 244 -get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~~ 285 (289)
++|.+++.++++.+.++ +|+.++++.|.-.|+|++.....
T Consensus 199 P~QT~~~~~~~l~~a~~l--~pdhis~y~L~~~p~t~~~~~~~ 239 (416)
T COG0635 199 PGQTLESLKEDLEQALEL--GPDHLSLYSLAIEPGTKFAQRKI 239 (416)
T ss_pred CCCCHHHHHHHHHHHHhC--CCCEEEEeeeecCCCchhhhhcc
Confidence 99999999999999999 69999999999999999987544
|
|
| >COG0320 LipA Lipoate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.9e-19 Score=144.92 Aligned_cols=170 Identities=22% Similarity=0.383 Sum_probs=140.8
Q ss_pred ccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc---
Q 022946 95 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--- 171 (289)
Q Consensus 95 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--- 171 (289)
++..|..+|.||..... . + ..++++|-.+.++..+..|.+.++|++.+++... +.....+.+.|+++++.
T Consensus 76 mG~~CTR~C~FC~V~~g----~-P-~~lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL~-DGGA~hfa~~i~~Ire~~P~ 148 (306)
T COG0320 76 LGDICTRRCRFCDVKTG----R-P-NPLDPDEPERVAEAVKDMGLKYVVITSVDRDDLP-DGGAQHFAECIRAIRELNPQ 148 (306)
T ss_pred ccchhccCCCccccCCC----C-C-CCCCCchHHHHHHHHHHhCCCeEEEEeecccccc-ccchHHHHHHHHHHHhhCCC
Confidence 48899999999998742 1 2 2378888888888888999999999988776551 22335566666666643
Q ss_pred -CceEEEeCCCCCHHHHHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcC--CceeecEEeecCCCHH
Q 022946 172 -GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAG--INVCSGGIIGLGEAEE 248 (289)
Q Consensus 172 -~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~G--i~v~~~~i~Glget~e 248 (289)
.+++.+....=..+.++.+.++|.|.+++++||.++++..++++.+|+.-++.++.+++.+ +.+.+++|+|+|||.+
T Consensus 149 t~iEvL~PDF~G~~~al~~v~~~~pdV~nHNvETVprL~~~VRp~A~Y~~SL~~L~~~k~~~P~i~TKSgiMlGLGEt~~ 228 (306)
T COG0320 149 TTIEVLTPDFRGNDDALEIVADAGPDVFNHNVETVPRLYPRVRPGATYERSLSLLERAKELGPDIPTKSGLMVGLGETDE 228 (306)
T ss_pred ceEEEeCccccCCHHHHHHHHhcCcchhhcccccchhcccccCCCCcHHHHHHHHHHHHHhCCCcccccceeeecCCcHH
Confidence 4566655333368889999999999999999999999999999999999999999999998 6789999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeeeeccce
Q 022946 249 DRVGLLHTLATLPTHPESVPINALL 273 (289)
Q Consensus 249 d~~~~l~~l~~l~~~~~~v~i~~~~ 273 (289)
++.++++.|++. +++.+.+..|+
T Consensus 229 Ev~e~m~DLr~~--gvdilTiGQYl 251 (306)
T COG0320 229 EVIEVMDDLRSA--GVDILTIGQYL 251 (306)
T ss_pred HHHHHHHHHHHc--CCCEEEecccc
Confidence 999999999999 68999998775
|
|
| >TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-18 Score=155.16 Aligned_cols=172 Identities=17% Similarity=0.303 Sum_probs=139.4
Q ss_pred EeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH
Q 022946 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169 (289)
Q Consensus 90 ~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik 169 (289)
..+++ |+.||++|.||+...... .....++.+++.+.++++.+.|+..|.|+| |||...+++.++++.++
T Consensus 9 l~iei-T~~CNl~C~~C~~~~~~~---~~~~~l~~e~~~~ii~~~~~~g~~~v~~~G------GEPll~~~~~~ii~~~~ 78 (358)
T TIGR02109 9 LLAEL-THRCPLQCPYCSNPLELA---RRKAELTTEEWTDVLTQAAELGVLQLHFSG------GEPLARPDLVELVAHAR 78 (358)
T ss_pred EEEee-ccccCcCCCCCCCChhcc---cccCCCCHHHHHHHHHHHHhcCCcEEEEeC------ccccccccHHHHHHHHH
Confidence 34666 999999999998753211 123448999999999999899998998876 56766778889999888
Q ss_pred hcCceE-EEeCCC-CCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCC-CCHHHHHHHHHHHHHcCCceeecEEeecCC
Q 022946 170 DMGMEV-CCTLGM-LEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITT-RSYDERLETLKHVREAGINVCSGGIIGLGE 245 (289)
Q Consensus 170 ~~~~~i-~~~~g~-l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~-~~~~~~~~~i~~~~~~Gi~v~~~~i~Glge 245 (289)
+.++.+ .+|||. ++++.++.|+++|++.|.+|+|+. +++++++++. .+++.++++++.+++.|+.+...+++ ..+
T Consensus 79 ~~g~~~~l~TNG~ll~~e~~~~L~~~g~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v~v~~vv-~~~ 157 (358)
T TIGR02109 79 RLGLYTNLITSGVGLTEARLDALADAGLDHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKAAGLPLTLNFVI-HRH 157 (358)
T ss_pred HcCCeEEEEeCCccCCHHHHHHHHhCCCCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCCceEEEEEe-ccC
Confidence 777653 467786 789999999999999999999999 9999998764 57999999999999999987665544 278
Q ss_pred CHHHHHHHHHHHhcCCCCCCeeeecccee
Q 022946 246 AEEDRVGLLHTLATLPTHPESVPINALLA 274 (289)
Q Consensus 246 t~ed~~~~l~~l~~l~~~~~~v~i~~~~p 274 (289)
+.+++.++++++.++ +++.+.+....+
T Consensus 158 N~~~l~~~~~~~~~l--g~~~i~~~~~~~ 184 (358)
T TIGR02109 158 NIDQIPEIIELAIEL--GADRVELATTQY 184 (358)
T ss_pred CHHHHHHHHHHHHHc--CCCEEEEEeeec
Confidence 899999999999999 577777655433
|
This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. |
| >PRK00955 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-18 Score=162.00 Aligned_cols=228 Identities=13% Similarity=0.208 Sum_probs=153.2
Q ss_pred cCCCCCCCHHHHHHhhCCChHHHHHHHHHHHHhhhCCCeeEEeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHH
Q 022946 47 EGPRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDA 126 (289)
Q Consensus 47 ~~~~~~ls~ee~~~l~~~~~~~l~~~a~~~~r~~~~g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~ee 126 (289)
..+...||.+|+..+|+.|....-...-.. ....+---.+...|.+ ++||+..|+||..+...+ ...+.+++++
T Consensus 253 npp~~~l~~~e~d~~y~lpy~r~~hp~y~~--~g~ipa~~~i~~sI~i-~RGC~g~CSFCaIp~~rG---r~~rSRs~es 326 (620)
T PRK00955 253 NPPAPPLTQEELDEVYDLPYTRTYHPSYEE--KGGIPAIEEVKFSITS-HRGCFGGCSFCAITFHQG---RFIQSRSQES 326 (620)
T ss_pred CCCCCCCChhhhhhccCCCcccCcchhhcc--CCCCCceeeEEEEEEe-eCCCCCCCCCCCeecccC---CcceecCHHH
Confidence 345557899999999987653322111110 0001111134455777 999999999998875432 2224469999
Q ss_pred HHHHHHHHHHc-CCcEEE--EecccCCCCCC-------------------------chhHHHHHHHHHHHHhc-Cce-EE
Q 022946 127 VMQAAQKAKEA-GSTRFC--MGAAWRDTIGR-------------------------KTNFNQILEYVKDIRDM-GME-VC 176 (289)
Q Consensus 127 i~~~~~~~~~~-g~~~i~--i~~~~~~~~ge-------------------------~~~~~~l~e~i~~ik~~-~~~-i~ 176 (289)
|+++++.+.+. |++.+. ++|...+.+|. ......+.++++++++. ++. +.
T Consensus 327 Iv~Evk~L~~~~gfkg~I~DlgGptan~Yg~~c~~~~~~~~c~~~~clfp~~c~nl~~d~~~l~~LLr~l~~l~gvkrv~ 406 (620)
T PRK00955 327 ILREAKELTEMPDFKGYIHDVGGPTANFRKMACKKQLKCGACKNKQCLFPKPCKNLDVDHKEYLELLRKVRKLPGVKKVF 406 (620)
T ss_pred HHHHHHHHHhccCCeEEEEeCCCCCccccccccccccccccccccccccCccccccCcChHHHHHHHHHHhccCCceEEE
Confidence 99999998876 777763 22222222221 01234678888887754 442 44
Q ss_pred EeCC----C----CCHHHHHHHHHcCCC-eEecCCCch-HHHHhccCCCCC--HHHHHHHH-HHHHHcCCc--eeecEEe
Q 022946 177 CTLG----M----LEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIITTRS--YDERLETL-KHVREAGIN--VCSGGII 241 (289)
Q Consensus 177 ~~~g----~----l~~e~l~~L~~aG~~-~v~i~let~-~~~~~~i~~~~~--~~~~~~~i-~~~~~~Gi~--v~~~~i~ 241 (289)
++.| . .+++.+++|.+.++. .+.+++|+. +++++.++++.. +++.++.+ +.+++.|+. +.+++|+
T Consensus 407 isSGIR~D~l~~~~~~~~l~eL~~~~vsg~L~IapESgSd~VLk~M~K~~~~~~~~f~~~~~~i~~~~G~~~~I~~yfIv 486 (620)
T PRK00955 407 IRSGIRYDYLLHDKNDEFFEELCEHHVSGQLKVAPEHISDRVLKLMGKPSREVYDKFVKKFDRINKKLGKKQYLVPYLMS 486 (620)
T ss_pred eecceeccccccCCcHHHHHHHHHHhcCCCceeCcCCCChHHHHHhCCCCHHHHHHHHHHHHHhhhhcCCCccEEEEEEE
Confidence 4433 1 234578888876443 688999999 999999988632 34444333 445678876 8889999
Q ss_pred ec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 242 GL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 242 Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
|+ |||.+|+.+++++++++ +.+.++++.|+|.|||+...
T Consensus 487 GfPGETeEDf~et~eflkel--~~~~~qV~~fTP~PGT~At~ 526 (620)
T PRK00955 487 SHPGSTLEDAIELAEYTKDL--GYQPEQVQDFYPTPGTLSTT 526 (620)
T ss_pred ECCCCCHHHHHHHHHHHHHc--CCCcceeeeeecCCCcchhh
Confidence 99 99999999999999999 68899999999999988654
|
|
| >TIGR01211 ELP3 histone acetyltransferase, ELP3 family | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.9e-18 Score=156.37 Aligned_cols=193 Identities=15% Similarity=0.262 Sum_probs=145.4
Q ss_pred eEEeEeeccccCCCCc-CCCCCCCC-------CCCCCC------CCCcCCCCHHHHHHHHHHHHHcC--CcEE--EEecc
Q 022946 86 VQQCTLLSIKTGGCSE-DCSYCPQS-------SRYDTG------VKGQKLMTKDAVMQAAQKAKEAG--STRF--CMGAA 147 (289)
Q Consensus 86 ~~~~~~i~~~t~~C~~-~C~fC~~~-------~~~~~~------~~~~~~~~~eei~~~~~~~~~~g--~~~i--~i~~~ 147 (289)
|.+.+++.- -..||+ +|.||... +.|... ..++.+-+.+++...++.+...| ++.| .|.||
T Consensus 66 v~~v~vm~~-p~~cph~~c~~cp~~~~~~~~~~sy~~~ep~~~ra~~~~~dpy~q~~~rl~~l~~~g~~~~kvE~i~~GG 144 (522)
T TIGR01211 66 VAVVAVMTS-PHRCPHGKCLYCPGGPDSENSPQSYTGYEPAAMRGRQNDYDPYEQVTARLEQLEQIGHPVDKVELIIMGG 144 (522)
T ss_pred eEEEEEecC-CccCCCCceEeCCCCCCcCCCCcccCCCCcHhHHHHHcCCCcHHHHHHHHHHHHHhCCCCceEEEEEECC
Confidence 334344432 457996 79999642 222111 01234468899999999988866 4344 45554
Q ss_pred cCCCCCCchhHHHHHHHHHHHH-h-------------------------cCceEEEeCCCCCHHHHHHHHHcCCCeEecC
Q 022946 148 WRDTIGRKTNFNQILEYVKDIR-D-------------------------MGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 201 (289)
Q Consensus 148 ~~~~~ge~~~~~~l~e~i~~ik-~-------------------------~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~ 201 (289)
. ++.-.....+++++.+.... . .++.+.+++..++++.++.|+++|+++|++|
T Consensus 145 T-ft~l~~~y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiEtRPD~i~~e~L~~L~~~G~~rVslG 223 (522)
T TIGR01211 145 T-FPARDLDYQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIETRPDYCREEHIDRMLKLGATRVELG 223 (522)
T ss_pred C-cccCCHHHHHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEEEcCCcCCHHHHHHHHHcCCCEEEEE
Confidence 3 33322344455555444321 1 1333456678899999999999999999999
Q ss_pred CCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec-CCCHHHHHHHHHHHhc---CCCCCCeeeeccceecC
Q 022946 202 LDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLAT---LPTHPESVPINALLAVK 276 (289)
Q Consensus 202 let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-get~ed~~~~l~~l~~---l~~~~~~v~i~~~~p~p 276 (289)
+||+ +++++.++++++.++++++++.++++|++++.++|+|+ |+|.++..++++.+.+ + +++.+.++++.+.|
T Consensus 224 VQS~~d~VL~~inRght~~~v~~Ai~~lr~~G~~v~~~LM~GLPgqt~e~~~~t~~~l~~~~~l--~pD~Ikiypl~V~~ 301 (522)
T TIGR01211 224 VQTIYNDILERTKRGHTVRDVVEATRLLRDAGLKVVYHIMPGLPGSSFERDLEMFREIFEDPRF--KPDMLKIYPTLVTR 301 (522)
T ss_pred CccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEEEEeecCCCCCCHHHHHHHHHHHHhccCC--CcCEEEEecceeeC
Confidence 9999 99999999999999999999999999999999999999 9999999999999874 7 69999999999999
Q ss_pred CCCCCC
Q 022946 277 GTPLQD 282 (289)
Q Consensus 277 gTpl~~ 282 (289)
||+|++
T Consensus 302 gT~L~~ 307 (522)
T TIGR01211 302 GTELYE 307 (522)
T ss_pred CCHHHH
Confidence 999975
|
The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases. |
| >PRK01254 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-18 Score=160.88 Aligned_cols=226 Identities=16% Similarity=0.204 Sum_probs=161.2
Q ss_pred CCCCCCHHHHHHhhCCChHHHHHHHHHHHHhhhCCCeeEEeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHH
Q 022946 49 PRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVM 128 (289)
Q Consensus 49 ~~~~ls~ee~~~l~~~~~~~l~~~a~~~~r~~~~g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~ 128 (289)
+-..||.+|+..+|+.|....-...-.. .. .+---.+...|.+ ++||+.+|+||+.+...+ ......|.|+|+
T Consensus 336 P~~plt~~ElD~vy~LPy~R~~HP~Y~~--~~-ipA~e~i~~sV~i-~RGC~g~CSFCaI~~hqG---r~irSRS~esIL 408 (707)
T PRK01254 336 PAIPLSTEEMDSVFALPYARVPHPAYGK--AR-IPAYDMIRFSVNI-MRGCFGGCSFCSITEHEG---RIIQSRSEESII 408 (707)
T ss_pred CcCCCCHHHHHHHhCCCcccccCccccc--CC-CCchhheEEEEEE-ccCCCCCCCccccccccC---CeeeeCCHHHHH
Confidence 3346788888888776543211111000 00 1111123345676 999999999999885432 123446999999
Q ss_pred HHHHHHHHc--CCcEEE--EecccCCCCCC---c----------------------hhHHHHHHHHHHHHhc-Cce-EEE
Q 022946 129 QAAQKAKEA--GSTRFC--MGAAWRDTIGR---K----------------------TNFNQILEYVKDIRDM-GME-VCC 177 (289)
Q Consensus 129 ~~~~~~~~~--g~~~i~--i~~~~~~~~ge---~----------------------~~~~~l~e~i~~ik~~-~~~-i~~ 177 (289)
++++.+.+. |++.+. ++|.+.+.+|- + .....+.++++++++. |+. +.+
T Consensus 409 ~Ea~~L~~~~pGfKgii~DLgGptaN~YG~~c~d~~~~~~C~~~~Cl~P~~C~nL~~dh~~l~eLLrkLr~IpGVKkVrI 488 (707)
T PRK01254 409 NEIEAIRDKVPGFTGVISDLGGPTANMYRLRCKSPRAEQTCRRLSCVYPDICPHLDTDHEPTINLYRRARDLKGIKKILI 488 (707)
T ss_pred HHHHHHHHhCCCcEEEEeccCCCccccccccccccccccccccccccCcccccccCCCHHHHHHHHHHHHhCCCceEEEE
Confidence 999999864 999988 66655555552 0 1235788888888754 542 433
Q ss_pred eCC------CCCHHHHHHHHHcCCC-eEecCCCch-HHHHhccCCC--CCHHHHHHHHHHHHH-cCC--ceeecEEeec-
Q 022946 178 TLG------MLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIITT--RSYDERLETLKHVRE-AGI--NVCSGGIIGL- 243 (289)
Q Consensus 178 ~~g------~l~~e~l~~L~~aG~~-~v~i~let~-~~~~~~i~~~--~~~~~~~~~i~~~~~-~Gi--~v~~~~i~Gl- 243 (289)
..| ..+++.+++|.+..+. .+.+.+|+. +++++.++++ .++++..+.++.+++ .|. .+.+.||+|+
T Consensus 489 ~SgiR~Dl~l~d~elIeel~~~hV~g~LkVppEH~Sd~VLk~M~Kp~~~~~e~F~e~f~rirk~~gk~q~LipyfIvGhP 568 (707)
T PRK01254 489 ASGVRYDLAVEDPRYVKELVTHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDKYSKEAGKEQYLIPYFISAHP 568 (707)
T ss_pred EcCCCccccccCHHHHHHHHHhCCccccccccccCCHHHHHHhCCCCcccHHHHHHHHHHHHHHCCCCeEEEEeEEEECC
Confidence 322 1358889999887775 778999999 9999999986 578999999999866 565 3566899999
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCeeeeccceecC---CCCCCCC
Q 022946 244 GEAEEDRVGLLHTLATLPTHPESVPINALLAVK---GTPLQDQ 283 (289)
Q Consensus 244 get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~p---gTpl~~~ 283 (289)
|||.+|+.+++++++++ +...-++..|+|.| +|.|+.-
T Consensus 569 GeTeeDf~eLaefLkel--~f~~eQVQ~FTPtP~t~~T~MYyt 609 (707)
T PRK01254 569 GTTDEDMVNLALWLKKN--RFRLDQVQNFYPSPMANATTMYYT 609 (707)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcceeeeeecCCCcCchHHHhc
Confidence 99999999999999999 56777788999999 8888763
|
|
| >COG1032 Fe-S oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=163.29 Aligned_cols=190 Identities=22% Similarity=0.333 Sum_probs=141.6
Q ss_pred eEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCc-hhHHHHHHHHH-
Q 022946 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-TNFNQILEYVK- 166 (289)
Q Consensus 89 ~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~-~~~~~l~e~i~- 166 (289)
...+++ ++||+++|.||..+..+ ..+.++.+.++++++...+.|...+.+..++...++.+ ...+...+.+.
T Consensus 199 ~~~ve~-~RGCp~~C~FC~~~~~~-----~~r~~~~~~v~~ei~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~ 272 (490)
T COG1032 199 AFSVET-SRGCPRGCRFCSITKHF-----KYRRRRPERVVEEIKELIEEGGKRVVFFVDDIFLYGSPALNDEKRFELLSL 272 (490)
T ss_pred EEEEEe-ccCCCCCCCCCCCcccc-----cccCCCHHHHHHHHHHHHHHhhhcCcccccceeecCCccccchhhcccchH
Confidence 356777 99999999999987532 34457889999988888777766654322222223322 12223333222
Q ss_pred HHHhcCc------eEE---EeCCCCC-HHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHH-HHHHHHHcCCc
Q 022946 167 DIRDMGM------EVC---CTLGMLE-KHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLE-TLKHVREAGIN 234 (289)
Q Consensus 167 ~ik~~~~------~i~---~~~g~l~-~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~-~i~~~~~~Gi~ 234 (289)
.+.+.+. .+. .....++ ++.+..++++|+.++.+|+||. +++++.++++.+.++.++ +++.+++.|+.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~g~~~~~iG~Esgs~~~l~~~~k~~~~~~~~~~a~~~~~~~~~~ 352 (490)
T COG1032 273 ELIERGLRKGCRVHISAPSLRADTVTDEELLKLLREAGLRRVYIGIESGSEELLKKINKGITTEEVLEEAVKIAKEHGLR 352 (490)
T ss_pred HHHHHhcccCceeeeeccccCchhcCHHHHHHHHhhCCCcceEEeccCCCHHHHHHHhCCCChHHHHHHHHHHHHhCCce
Confidence 2222211 222 2234566 8888999999999999999999 999999999999999995 99999999999
Q ss_pred eeecEEeec-CCCHHHHHHH---HHHHhcCCCCC-CeeeeccceecCCCCCCCCCCC
Q 022946 235 VCSGGIIGL-GEAEEDRVGL---LHTLATLPTHP-ESVPINALLAVKGTPLQDQKLK 286 (289)
Q Consensus 235 v~~~~i~Gl-get~ed~~~~---l~~l~~l~~~~-~~v~i~~~~p~pgTpl~~~~~~ 286 (289)
+..++|+|+ |||.+|+..+ ++++.++ +. ..+.++.|+|+|||+++..+..
T Consensus 353 ~~~~~i~G~pget~ed~~~t~~~~~~~~~~--~~~~~~~~~~~~p~p~t~~~~~~~~ 407 (490)
T COG1032 353 VKLYFIVGLPGETEEDVKETIELAKFIKKL--GPKLYVSPSPFVPLPGTPLQEMPKL 407 (490)
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHHHHh--CccceEEEeeeeCCCCCchhhcccc
Confidence 999999999 9999999998 6777778 45 4799999999999999987653
|
|
| >TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH | Back alignment and domain information |
|---|
Probab=99.80 E-value=9e-18 Score=148.27 Aligned_cols=201 Identities=17% Similarity=0.241 Sum_probs=149.8
Q ss_pred ChHHHHHHHHHHHHhhhCCCee-EEeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEE
Q 022946 65 PVLDLLFHGAQVHRHAHNFREV-QQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFC 143 (289)
Q Consensus 65 ~~~~l~~~a~~~~r~~~~g~~~-~~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~ 143 (289)
|+...+..++.+.+++..+.+- .+...+++ |..||++|.||+...... . .....++.|++++.++ +.|+..|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~Pl~l~le~-T~~CNL~C~~C~~~~~~~-~-~~~~~ls~ee~~~~i~---e~g~~~V~ 77 (318)
T TIGR03470 4 PLRQNLRVGAYIIKQKLNGRKRFPLVLMLEP-LFRCNLACAGCGKIQYPA-E-ILKQRLSVEECLRAVD---ECGAPVVS 77 (318)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCCCEEEEec-ccccCcCCcCCCCCcCCC-c-ccccCCCHHHHHHHHH---HcCCCEEE
Confidence 4444455556666665555433 24455777 999999999998753221 1 1223489999887665 46888888
Q ss_pred EecccCCCCCCchhHHHHHHHHHHHHhcCceE-EEeCCCCCHHHHHHHHHcCCCeEecCCCchHHHHhccC-CCCCHHHH
Q 022946 144 MGAAWRDTIGRKTNFNQILEYVKDIRDMGMEV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKII-TTRSYDER 221 (289)
Q Consensus 144 i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i-~~~~g~l~~e~l~~L~~aG~~~v~i~let~~~~~~~i~-~~~~~~~~ 221 (289)
|.| |||+..+++.++++.+++.+..+ .+|||.+..+.+..++++|...|.+++|+.++.++.+. +..+|+.+
T Consensus 78 i~G------GEPLL~pdl~eiv~~~~~~g~~v~l~TNG~ll~~~~~~l~~~~~~~i~VSLDG~~e~hd~~~~~~g~f~~~ 151 (318)
T TIGR03470 78 IPG------GEPLLHPEIDEIVRGLVARKKFVYLCTNALLLEKKLDKFEPSPYLTFSVHLDGLREHHDASVCREGVFDRA 151 (318)
T ss_pred EeC------ccccccccHHHHHHHHHHcCCeEEEecCceehHHHHHHHHhCCCcEEEEEEecCchhhchhhcCCCcHHHH
Confidence 876 67877788999999888766553 56789877778899999999999999999866777664 45789999
Q ss_pred HHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCC
Q 022946 222 LETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP 279 (289)
Q Consensus 222 ~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTp 279 (289)
+++|+.+++.|+.+...+.+--+++.+++.+.++++.++ +++.+.+.+..|+..++
T Consensus 152 l~~I~~l~~~G~~v~v~~tv~~~~n~~ei~~~~~~~~~l--Gv~~i~i~p~~~~~~a~ 207 (318)
T TIGR03470 152 VEAIREAKARGFRVTTNTTLFNDTDPEEVAEFFDYLTDL--GVDGMTISPGYAYEKAP 207 (318)
T ss_pred HHHHHHHHHCCCcEEEEEEEeCCCCHHHHHHHHHHHHHc--CCCEEEEecCccccccc
Confidence 999999999999877766542378999999999999999 57888887766654443
|
The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH |
| >PRK08629 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.2e-17 Score=150.15 Aligned_cols=176 Identities=13% Similarity=0.164 Sum_probs=130.9
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcC--CcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAG--STRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-- 171 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g--~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~-- 171 (289)
-+.|+.+|.||.+++... ...... .-.+.+.++++...+.| ++.+.|+||. +... + +.+.++++.+++.
T Consensus 59 IPFC~~~C~yC~f~~~~~-~~~~~~-~Y~~~L~~Ei~~~~~~~~~~~siy~GGGT-Ps~l-~---~~L~~ll~~i~~~f~ 131 (433)
T PRK08629 59 VPFCHTLCPYCSFHRFYF-KEDKAR-AYFISLRKEMEMVKELGYDFESMYVGGGT-TTIL-E---DELAKTLELAKKLFS 131 (433)
T ss_pred eCCccCcCCCCCCcCcCC-CcchHH-HHHHHHHHHHHHHHhcCCceEEEEECCCc-cccC-H---HHHHHHHHHHHHhCC
Confidence 578999999999975321 111111 12577788887766654 5567676643 2221 2 4455555555432
Q ss_pred --CceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHH---HHHHHHHHHcCCceeecEEeec-C
Q 022946 172 --GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDER---LETLKHVREAGINVCSGGIIGL-G 244 (289)
Q Consensus 172 --~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~---~~~i~~~~~~Gi~v~~~~i~Gl-g 244 (289)
.+.+.+++..++.+.++.|+++ ++++++|+||+ +++++.+.+.++.+.. ++.++.+++.+..++.++|+|+ |
T Consensus 132 i~eis~E~~P~~lt~e~L~~l~~~-vnrlsiGVQS~~d~vLk~~gR~h~~~~~~~~~~~l~~~~~~~~~v~~DlI~GlPg 210 (433)
T PRK08629 132 IKEVSCESDPNHLDPPKLKQLKGL-IDRLSIGVQSFNDDILKMVDRYEKFGSGQETFEKIMKAKGLFPIINVDLIFNFPG 210 (433)
T ss_pred CceEEEEeCcccCCHHHHHHHHHh-CCeEEEecCcCCHHHHHHcCCCCChhHHHHHHHHHHHHhccCCeEEEEEEccCCC
Confidence 2445677888999999999999 99999999999 9999999998876555 5555555444456899999999 9
Q ss_pred CCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCC
Q 022946 245 EAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ 281 (289)
Q Consensus 245 et~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~ 281 (289)
||.+++.++++++.++ +++.+.++++.+.|+|+..
T Consensus 211 qT~e~~~~~l~~~~~l--~p~~is~y~L~~~~~t~~~ 245 (433)
T PRK08629 211 QTDEVLQHDLDIAKRL--DPRQITTYPLMKSHQTRKS 245 (433)
T ss_pred CCHHHHHHHHHHHHhC--CCCEEEEccceeccCchhh
Confidence 9999999999999999 6999999999999999854
|
|
| >COG1856 Uncharacterized homolog of biotin synthetase [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.4e-17 Score=131.47 Aligned_cols=185 Identities=16% Similarity=0.295 Sum_probs=145.4
Q ss_pred cccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcC
Q 022946 94 IKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMG 172 (289)
Q Consensus 94 ~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~ 172 (289)
..++.|.++|.+|...-... .. . .+.+++++...++...|+..+.+.||- +.-| .-.++.+.+.++++| +.+
T Consensus 16 VTG~yC~lnC~HCg~~~L~~-Mi-~---vt~~~l~k~~~el~kkGy~g~llSGGm-~srg-~VPl~kf~d~lK~lke~~~ 88 (275)
T COG1856 16 VTGAYCSLNCPHCGRHYLEH-MI-K---VTTKSLLKRCMELEKKGYEGCLLSGGM-DSRG-KVPLWKFKDELKALKERTG 88 (275)
T ss_pred EeccceEecChHHHHHHHHH-hc-c---cchHHHHHHHHHHHhcCceeEEEeCCc-CCCC-CccHHHHHHHHHHHHHhhC
Confidence 34789999999998642211 11 1 244778888888888999988887654 3333 567889999999999 568
Q ss_pred ceEEEeCCCCCHHHHHHHHHcCCCeEecCCCchHHHHhccCC-CCCHHHHHHHHHHHHHcCCceeecEEeec-CCCHHHH
Q 022946 173 MEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIIT-TRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDR 250 (289)
Q Consensus 173 ~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~~~~~~~i~~-~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-get~ed~ 250 (289)
+.+..+.|..+++.++.|+++++|.+++.+=+-.++.+.+-+ .++.+++++.++.+++.|+++..++++|+ .-..+.-
T Consensus 89 l~inaHvGfvdE~~~eklk~~~vdvvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvpHitiGL~~gki~~e 168 (275)
T COG1856 89 LLINAHVGFVDESDLEKLKEELVDVVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVVPHITIGLDFGKIHGE 168 (275)
T ss_pred eEEEEEeeeccHHHHHHHHHhcCcEEEEeecCChHHHHHHHcCCccHHHHHHHHHHHHHcCceeceeEEEEeccCcccch
Confidence 888888999999999999999999998766544344444333 67899999999999999999999999999 4444444
Q ss_pred HHHHHHHhcCCCCCCeeeeccceecCCCCCCCCCCCC
Q 022946 251 VGLLHTLATLPTHPESVPINALLAVKGTPLQDQKLKY 287 (289)
Q Consensus 251 ~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~~~~ 287 (289)
.+.++.|.+. .++.+-+..|+|.|||.|.+.++++
T Consensus 169 ~kaIdiL~~~--~~DalVl~vliPtpGtkm~~~~pp~ 203 (275)
T COG1856 169 FKAIDILVNY--EPDALVLVVLIPTPGTKMGNSPPPP 203 (275)
T ss_pred HHHHHHHhcC--CCCeEEEEEEecCCchhccCCCCcC
Confidence 5667778777 5899999999999999999988876
|
|
| >TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-16 Score=134.47 Aligned_cols=169 Identities=21% Similarity=0.301 Sum_probs=125.4
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcC---CcEEEEecccCCCCCCchhHHH-HHHHHHHHHhc
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAG---STRFCMGAAWRDTIGRKTNFNQ-ILEYVKDIRDM 171 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g---~~~i~i~~~~~~~~ge~~~~~~-l~e~i~~ik~~ 171 (289)
|.+||++|.||.....+.. .....++++++++++..+.... ...|.|+| |||+...+ +.++++.+++.
T Consensus 22 ~~gCnl~C~~C~~~~~~~~--~~~~~~s~e~i~~~i~~~~~~~~~~~~~I~~~G------GEPll~~~~~~~li~~~~~~ 93 (235)
T TIGR02493 22 MQGCPLRCQYCHNPDTWDL--KGGTEVTPEELIKEVGSYKDFFKASGGGVTFSG------GEPLLQPEFLSELFKACKEL 93 (235)
T ss_pred ECCCCCcCCCCCChhhccC--CCCEECCHHHHHHHHHHhHHHHhcCCCeEEEeC------cccccCHHHHHHHHHHHHHC
Confidence 8899999999986532211 2224479999999888765532 24677776 56655444 55888888877
Q ss_pred CceE-EEeCCCCC--HHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEe--ecCC
Q 022946 172 GMEV-CCTLGMLE--KHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGII--GLGE 245 (289)
Q Consensus 172 ~~~i-~~~~g~l~--~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~--Glge 245 (289)
++.+ ..|||.+. .+.+.++.+ .++.+.+++++. ++.++++++. +++.++++++.+++.|+.+...+++ |..+
T Consensus 94 g~~~~i~TNG~~~~~~~~~~~ll~-~~d~v~isl~~~~~~~~~~~~g~-~~~~v~~~i~~l~~~g~~~~v~~vv~~~~~~ 171 (235)
T TIGR02493 94 GIHTCLDTSGFLGGCTEAADELLE-YTDLVLLDIKHFNPEKYKKLTGV-SLQPTLDFAKYLAKRNKPIWIRYVLVPGYTD 171 (235)
T ss_pred CCCEEEEcCCCCCccHHHHHHHHH-hCCEEEEeCCCCCHHHHHHHHCC-CcHHHHHHHHHHHhCCCcEEEEEeeeCCcCC
Confidence 7654 45788643 566666666 478999999999 9999988765 8899999999999999986655444 4457
Q ss_pred CHHHHHHHHHHHhcCCCCCCeeeeccceec
Q 022946 246 AEEDRVGLLHTLATLPTHPESVPINALLAV 275 (289)
Q Consensus 246 t~ed~~~~l~~l~~l~~~~~~v~i~~~~p~ 275 (289)
+.+++.++++++.+++ ....+.+.+|.|.
T Consensus 172 n~~ei~~l~~~~~~l~-~~~~~~~~p~~~~ 200 (235)
T TIGR02493 172 SEEDIEALAEFVKTLP-NVERVEVLPYHQL 200 (235)
T ss_pred CHHHHHHHHHHHHhCC-CCceEEecCCCcc
Confidence 8899999999999994 1467777777764
|
An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue. |
| >TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.1e-16 Score=143.66 Aligned_cols=182 Identities=16% Similarity=0.257 Sum_probs=136.5
Q ss_pred eccccCCCCcCCCCCCCCCC-CCCCC--CCcCCCCHHHHHHHHHHHHHc--CCcEEEEecccCCCCCCchh-HHHHHHHH
Q 022946 92 LSIKTGGCSEDCSYCPQSSR-YDTGV--KGQKLMTKDAVMQAAQKAKEA--GSTRFCMGAAWRDTIGRKTN-FNQILEYV 165 (289)
Q Consensus 92 i~~~t~~C~~~C~fC~~~~~-~~~~~--~~~~~~~~eei~~~~~~~~~~--g~~~i~i~~~~~~~~ge~~~-~~~l~e~i 165 (289)
+.+ |++||.+|.||..... .+... .....++++|+++.++.+.+. ++..|.|.| .|||+. .+.+++.+
T Consensus 28 ~~v-t~~CNl~C~yC~~~~~~~~esrpg~~~~~Ltpee~~~~i~~v~~~~~~~~~V~iaG-----~GEPLl~~e~~~~~l 101 (442)
T TIGR01290 28 LAV-APACNIQCNYCNRKYDCANESRPGVVSELLTPEQALRKARQVAAEIPQLSVVGIAG-----PGDPLANIGKTFQTL 101 (442)
T ss_pred Eec-CCCCCCcCcCCCCCCCCCcCCCCccccccCCHHHHHHHHHHHHHhcCCCCEEEEec-----CCCcccCccccHHHH
Confidence 444 9999999999985421 11111 123458999999999887654 567777776 356644 35677888
Q ss_pred HHHHhc--CceE-EEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCC----------CC-----CHHHHHHHHH
Q 022946 166 KDIRDM--GMEV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT----------TR-----SYDERLETLK 226 (289)
Q Consensus 166 ~~ik~~--~~~i-~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~----------~~-----~~~~~~~~i~ 226 (289)
+.+++. ++.+ ..|||.+..+.+++|.++|+|.|.+++++. +++++++.+ +. .++..++.|+
T Consensus 102 ~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~gvd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~ 181 (442)
T TIGR01290 102 ELVARQLPDVKLCLSTNGLMLPEHVDRLVDLGVGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLE 181 (442)
T ss_pred HHHHHhcCCCeEEEECCCCCCHHHHHHHHHCCCCeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHH
Confidence 877754 6665 467998889999999999999999999999 999987631 11 1567789999
Q ss_pred HHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecC--CCCCC
Q 022946 227 HVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK--GTPLQ 281 (289)
Q Consensus 227 ~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~p--gTpl~ 281 (289)
.+.+.|+.+...+++--|.+++++.+++++++++ +...+.+.+|+|.| |+++.
T Consensus 182 ~l~~~G~~v~v~~vlIpGiND~~i~~l~~~~~~l--g~~~~nl~p~~~~p~~G~~~~ 236 (442)
T TIGR01290 182 KLTERGILVKVNSVLIPGINDEHLVEVSKQVKEL--GAFLHNVMPLISAPEHGTVYG 236 (442)
T ss_pred HHHhCCCeEEEEEEeeCCcCHHHHHHHHHHHHhC--CCcEEEeecCCCccccCCccC
Confidence 9999999765554443355668999999999999 56788999999888 88864
|
This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model. |
| >COG2100 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-16 Score=133.76 Aligned_cols=176 Identities=16% Similarity=0.254 Sum_probs=132.7
Q ss_pred cCCCCcCCCCCCCCCCCCCC-CCCcCCCCHHHHHHHHHHHHHcC--CcEEEEecccCCCCCCchhHHHHHHHHHHHHhc-
Q 022946 96 TGGCSEDCSYCPQSSRYDTG-VKGQKLMTKDAVMQAAQKAKEAG--STRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM- 171 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~-~~~~~~~~~eei~~~~~~~~~~g--~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~- 171 (289)
+.+|+++|.||+.....-.. .......++|.+++..+...+.. .-+.++-| .|||..+..+.++++++++.
T Consensus 114 ~tgCnlnCIfCSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~KgkglEaHlDG-----qGEP~lYP~l~~lVqalk~~~ 188 (414)
T COG2100 114 STGCNLNCIFCSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFKGKGLEAHLDG-----QGEPLLYPHLVDLVQALKEHK 188 (414)
T ss_pred CccccceeEEEeccCCcccceeccceEecHHHHHHHHHHHHhhhCCCeEEEecC-----CCCCccchhHHHHHHHHhcCC
Confidence 77999999999876432111 12233468899998887776543 23455654 47898999999999999954
Q ss_pred CceE---EEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCC--CCCHHHHHHHHHHHHHcCCceeecEEeecCC
Q 022946 172 GMEV---CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT--TRSYDERLETLKHVREAGINVCSGGIIGLGE 245 (289)
Q Consensus 172 ~~~i---~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~--~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glge 245 (289)
++++ .++.+.++.+.+++|.+||+|++++|+++. ++.-+.+.+ ..+.+.+++.++++..+|+.+-..=+.-.|-
T Consensus 189 ~v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a~idvlIaPv~lPG~ 268 (414)
T COG2100 189 GVEVVSMQTNGVLLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANAGIDVLIAPVWLPGV 268 (414)
T ss_pred CceEEEEeeCceeccHHHHHHHHHhCCceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHhCCCCEEEeeeecCCc
Confidence 5553 334446899999999999999999999999 888777776 4578999999999999999854433222255
Q ss_pred CHHHHHHHHHHHhcCCC--CCCeeeeccceecC
Q 022946 246 AEEDRVGLLHTLATLPT--HPESVPINALLAVK 276 (289)
Q Consensus 246 t~ed~~~~l~~l~~l~~--~~~~v~i~~~~p~p 276 (289)
+++++...++|.++++. +...+++..|+|++
T Consensus 269 ND~E~~~iIe~A~~iGaGkk~p~lgiQkyipyk 301 (414)
T COG2100 269 NDDEMPKIIEWAREIGAGKKWPPLGIQKYIPYK 301 (414)
T ss_pred ChHHHHHHHHHHHHhCCCCCCCCcceEEeeeec
Confidence 67899999999999865 34567788888875
|
|
| >COG1242 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.1e-16 Score=129.55 Aligned_cols=201 Identities=19% Similarity=0.304 Sum_probs=142.9
Q ss_pred HHHHHHHHhhhCCCeeEEeEeeccccCCCCc--------CCCCCCCCCCCCCCCCCcCCCCH-HHHHHHHHHHHH-cCC-
Q 022946 71 FHGAQVHRHAHNFREVQQCTLLSIKTGGCSE--------DCSYCPQSSRYDTGVKGQKLMTK-DAVMQAAQKAKE-AGS- 139 (289)
Q Consensus 71 ~~a~~~~r~~~~g~~~~~~~~i~~~t~~C~~--------~C~fC~~~~~~~~~~~~~~~~~~-eei~~~~~~~~~-~g~- 139 (289)
+....-.|++ +|.+++=.+ +.. +-.||+ .|.||+...... ....+..+. +++.+.++.+.+ .+-
T Consensus 9 ~t~~~~lr~~-fg~Kv~Kv~-ld~-GF~CPNRDGti~rGGCtFC~~~g~~d--~~~~~~~~i~~Q~~~q~~~~~kK~~~~ 83 (312)
T COG1242 9 YTLNDYLREK-FGEKVFKVT-LDG-GFSCPNRDGTIGRGGCTFCSVAGSGD--FAGQPKISIAEQFKEQAERMHKKWKRG 83 (312)
T ss_pred HHHHHHHHHH-hCCeeEEEe-ccC-CCCCCCCCCcccCCceeeecCCCCCc--cccCcccCHHHHHHHHHHHHHHhhcCC
Confidence 3334445666 388776422 333 668997 599997653211 112233454 445555554433 222
Q ss_pred cE-EEEecccCCCCCCchhHHHHHHHHHH-HHh---cCceEEEeCCCCCHHHHHHHHHcCC---CeEecCCCch-HHHHh
Q 022946 140 TR-FCMGAAWRDTIGRKTNFNQILEYVKD-IRD---MGMEVCCTLGMLEKHQAIELKKAGL---TAYNHNLDTS-REFYS 210 (289)
Q Consensus 140 ~~-i~i~~~~~~~~ge~~~~~~l~e~i~~-ik~---~~~~i~~~~g~l~~e~l~~L~~aG~---~~v~i~let~-~~~~~ 210 (289)
+. +.|+.. .+++. ..+.+.+..+. +.. .|+.|.+.+..+++++++.|.+..- -+|.+|++|+ +++.+
T Consensus 84 kyiaYFQ~~-TNTyA---pvevLre~ye~aL~~~~VVGLsIgTRPDClpd~VldlL~e~~~r~~vWvELGLQT~h~~Tlk 159 (312)
T COG1242 84 KYIAYFQAY-TNTYA---PVEVLREMYEQALSEAGVVGLSIGTRPDCLPDDVLDLLAEYNKRYEVWVELGLQTAHDKTLK 159 (312)
T ss_pred cEEEEEecc-ccccC---cHHHHHHHHHHHhCcCCeeEEeecCCCCCCcHHHHHHHHHHhhheEEEEEeccchhhHHHHH
Confidence 22 345543 34544 33444444433 222 3666777888999999988887632 2566899999 99999
Q ss_pred ccCCCCCHHHHHHHHHHHHHcCCceeecEEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 211 KIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 211 ~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
.++++++++.+.++++.+++.||+|++++|+|+ ||+.++..++++.+..+ +++.|-++++...+||||+.
T Consensus 160 ~iNRgHd~~~y~dav~r~rkrgIkvc~HiI~GLPgE~~~~mleTak~v~~~--~v~GIKlH~LhvvkgT~m~k 230 (312)
T COG1242 160 RINRGHDFACYVDAVKRLRKRGIKVCTHLINGLPGETRDEMLETAKIVAEL--GVDGIKLHPLHVVKGTPMEK 230 (312)
T ss_pred HHhcccchHHHHHHHHHHHHcCCeEEEEEeeCCCCCCHHHHHHHHHHHHhc--CCceEEEEEEEEecCChHHH
Confidence 999999999999999999999999999999999 99999999999999999 68999999999999999975
|
|
| >COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3e-16 Score=138.66 Aligned_cols=195 Identities=17% Similarity=0.305 Sum_probs=139.2
Q ss_pred CeeEEeEeeccccCCCCc-CCCCCCCC------CCCCCCCC-------CcCCCCHHHHHHHHHHHHHcCCc----EEEEe
Q 022946 84 REVQQCTLLSIKTGGCSE-DCSYCPQS------SRYDTGVK-------GQKLMTKDAVMQAAQKAKEAGST----RFCMG 145 (289)
Q Consensus 84 ~~~~~~~~i~~~t~~C~~-~C~fC~~~------~~~~~~~~-------~~~~~~~eei~~~~~~~~~~g~~----~i~i~ 145 (289)
..+++.+++-- -.+||+ +|.||... +.+ ++.. +..+-+-.++...++.+...|-+ ++.|.
T Consensus 63 sgvaVVaVmt~-p~~CPHg~CvfCpgg~~~~spQSy-tg~ep~~~R~~~~~ydpY~q~~~Rl~qL~~igh~~~KvEliim 140 (515)
T COG1243 63 SGVAVVAVMTS-PHGCPHGRCVFCPGGPDKDSPQSY-TGEEPAALRAIKNRYDPYEQVRARLKQLETIGHTSDKVELIIM 140 (515)
T ss_pred ccceEEEEecC-CCCCCCCeEEeCCCCCCCCCCccc-CCCCchhhhHhhccCCcHHHHHHHHHHHHHcCCCcceEEEEEe
Confidence 33444444432 569998 99999765 222 1111 12334678888888989887733 24444
Q ss_pred cccCCCCCCch-hHHHHHHHHHH-HH-------------------hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCc
Q 022946 146 AAWRDTIGRKT-NFNQILEYVKD-IR-------------------DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (289)
Q Consensus 146 ~~~~~~~ge~~-~~~~l~e~i~~-ik-------------------~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let 204 (289)
||. ++ +-+. ..++++..+.. +. -.|+.+.+.+...+++.++.|++.|++.|.+|+||
T Consensus 141 GGT-Ft-a~~~~yqe~Fi~~~~~amn~f~~~le~a~~~ne~~~~r~vgitiETRPD~~~ee~ld~mlkyG~TrVELGVQS 218 (515)
T COG1243 141 GGT-FT-ALSLEYQEWFLKVALKAMNDFGYDLEEAQRKNETAELRCVGITIETRPDYIDEEHLDQMLKYGVTRVELGVQS 218 (515)
T ss_pred ccc-cc-CCCHHHHHHHHHHHHHhhhccchhHHHHHHhhcccccceeEEEEecCccccCHHHHHHHHhcCCcEEEEeeee
Confidence 443 33 3332 22333333221 11 12455667788899999999999999999999999
Q ss_pred h-HHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec-CCCHHHHHHHHHHHhcCCC-CCCeeeeccceecCCCCCC
Q 022946 205 S-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLATLPT-HPESVPINALLAVKGTPLQ 281 (289)
Q Consensus 205 ~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~-~~~~v~i~~~~p~pgTpl~ 281 (289)
. +++++...++++.+++.++-+.++++|++++.++|.|+ |.+.+--.++...+-+.+. +||.+.|++....+||+|+
T Consensus 219 iyd~Vl~~~~RGHtvedv~~a~rLlKd~GfKv~~HiMpGLPgs~~erDl~~f~~~f~~p~f~PDmlKIYPtLVi~gT~Ly 298 (515)
T COG1243 219 IYDDVLERTKRGHTVEDVVEATRLLKDAGFKVGYHIMPGLPGSDFERDLESFREIFEDPRFRPDMLKIYPTLVIEGTELY 298 (515)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHhcCcEEEEEecCCCCCCChHHHHHHHHHHHhCCCCCCCeEEEeeeEEECCchHH
Confidence 9 99999999999999999999999999999999999999 8877743344444433321 5899999999999999987
Q ss_pred C
Q 022946 282 D 282 (289)
Q Consensus 282 ~ 282 (289)
+
T Consensus 299 ~ 299 (515)
T COG1243 299 E 299 (515)
T ss_pred H
Confidence 5
|
|
| >PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-15 Score=129.63 Aligned_cols=172 Identities=15% Similarity=0.212 Sum_probs=127.7
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc---CCcEEEEecccCCCCCCchhHHH-HHHHHHHHHhc
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA---GSTRFCMGAAWRDTIGRKTNFNQ-ILEYVKDIRDM 171 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~---g~~~i~i~~~~~~~~ge~~~~~~-l~e~i~~ik~~ 171 (289)
+.|||++|.||........ ...+.++++++++.+...... ....|+|+| |||+...+ +.++++.+++.
T Consensus 27 ~~gCnl~C~~C~~~~~~~~--~~~~~lt~eei~~~i~~~~~~~~~~~~~V~~sG------GEPll~~~~~~~l~~~~k~~ 98 (246)
T PRK11145 27 FQGCLMRCLYCHNRDTWDT--HGGKEVTVEELMKEVVTYRHFMNASGGGVTASG------GEAILQAEFVRDWFRACKKE 98 (246)
T ss_pred ECCCCCcCCCCCCHHHCCC--CCCeEcCHHHHHHHHHHhHHHHhcCCCeEEEeC------ccHhcCHHHHHHHHHHHHHc
Confidence 7899999999986532211 122347999999988765432 234677765 67765545 56888989887
Q ss_pred CceE-EEeCCCCC--HHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCceee--cEEeecCC
Q 022946 172 GMEV-CCTLGMLE--KHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCS--GGIIGLGE 245 (289)
Q Consensus 172 ~~~i-~~~~g~l~--~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~--~~i~Glge 245 (289)
|+.+ ..|+|.+. .+.++.+.+. +|.|.+++++. ++.++.+.+. +.+..++.++.+.+.|+++.. .++-|+.+
T Consensus 99 g~~i~l~TNG~~~~~~~~~~~ll~~-~d~v~islk~~~~e~~~~~~g~-~~~~~l~~i~~l~~~g~~v~i~~~li~g~nd 176 (246)
T PRK11145 99 GIHTCLDTNGFVRRYDPVIDELLDV-TDLVMLDLKQMNDEIHQNLVGV-SNHRTLEFARYLAKRNQKTWIRYVVVPGWTD 176 (246)
T ss_pred CCCEEEECCCCCCcchHHHHHHHHh-CCEEEECCCcCChhhcccccCC-ChHHHHHHHHHHHhCCCcEEEEEEEECCCCC
Confidence 8775 45788753 5777887764 89999999999 9999988764 457889999999999987554 45556678
Q ss_pred CHHHHHHHHHHHhcCCCCCCeeeeccceecCCC
Q 022946 246 AEEDRVGLLHTLATLPTHPESVPINALLAVKGT 278 (289)
Q Consensus 246 t~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgT 278 (289)
+++++.++++++..++ .+..+.+.+|.|.++.
T Consensus 177 ~~~ei~~l~~~l~~l~-~~~~~~l~~~~~~~~~ 208 (246)
T PRK11145 177 DDDSAHRLGEFIKDMG-NIEKIELLPYHELGKH 208 (246)
T ss_pred CHHHHHHHHHHHHhcC-CcceEEEecCCccchh
Confidence 8889999999999884 3567778888877644
|
|
| >PRK13762 tRNA-modifying enzyme; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.3e-15 Score=132.72 Aligned_cols=182 Identities=19% Similarity=0.300 Sum_probs=132.8
Q ss_pred eEeeccccCCCCcCCCCCCCCCCCCCC--CCCcCCCCHHHHHHHHHHHHH---c---C--------------CcEEEEec
Q 022946 89 CTLLSIKTGGCSEDCSYCPQSSRYDTG--VKGQKLMTKDAVMQAAQKAKE---A---G--------------STRFCMGA 146 (289)
Q Consensus 89 ~~~i~~~t~~C~~~C~fC~~~~~~~~~--~~~~~~~~~eei~~~~~~~~~---~---g--------------~~~i~i~~ 146 (289)
+..+.....+|+++|.||..+.....+ .......++++|++++..... . | .+.+.|++
T Consensus 58 c~q~~P~~~~C~~rC~fC~r~~~~~~~~~~~~~~~~~peeiv~~~~~~~~~~i~g~~g~~~v~~~~~~ea~~~~~v~iSl 137 (322)
T PRK13762 58 CVQMTPVVAWCNQRCLFCWRPLEEDVGLELKEPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDREKFEEAMEPKHVAISL 137 (322)
T ss_pred eeccCchhHHHhccCceeeccCCCCcccccCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCHHHhhhccCCCEEEEeC
Confidence 334444244599999999875432211 122345789999998865421 1 2 24566665
Q ss_pred ccCCCCCCchhHHHHHHHHHHHHhcCceE-EEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCC---CCHHHH
Q 022946 147 AWRDTIGRKTNFNQILEYVKDIRDMGMEV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITT---RSYDER 221 (289)
Q Consensus 147 ~~~~~~ge~~~~~~l~e~i~~ik~~~~~i-~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~---~~~~~~ 221 (289)
.|||+..+++.++++.+++.|+.+ ..|||.+ .+.++.| .++++.+.+++++. ++.|++++++ .+++.+
T Consensus 138 -----~GEPlL~p~l~eli~~~k~~Gi~~~L~TNG~~-~e~l~~L-~~~~d~i~VSLda~~~e~~~~i~~~~~~~~~~~v 210 (322)
T PRK13762 138 -----SGEPTLYPYLPELIEEFHKRGFTTFLVTNGTR-PDVLEKL-EEEPTQLYVSLDAPDEETYKKINRPVIPDAWERI 210 (322)
T ss_pred -----CccccchhhHHHHHHHHHHcCCCEEEECCCCC-HHHHHHH-HhcCCEEEEEccCCCHHHHHHHhCCCCCCcHHHH
Confidence 378888889999999999888875 4678976 6788888 77899999999999 9999999763 589999
Q ss_pred HHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCC
Q 022946 222 LETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP 279 (289)
Q Consensus 222 ~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTp 279 (289)
+++++.+++.|..+...+.+--|.+..+..+.++++.++ +++.+.+.+|+|.....
T Consensus 211 l~~L~~l~~~~~~~~ir~tlv~g~Nd~e~~~~a~l~~~~--~~~~Iel~~y~~~G~~k 266 (322)
T PRK13762 211 LETLELLPSKKTRTVIRITLVKGYNMHDPEGFAKLIERA--NPDFVEVKAYMHVGYSR 266 (322)
T ss_pred HHHHHHHHhCCCCEEEEEEEECCcCccHHHHHHHHHHHc--CCCEEEEECCeECCCcc
Confidence 999999999988754443332234444445888888888 68999999998876653
|
|
| >TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.3e-15 Score=122.15 Aligned_cols=154 Identities=18% Similarity=0.305 Sum_probs=114.3
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceE
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEV 175 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i 175 (289)
|++||++|.||..+... .......++.+++.+.++.... .++.|.|.| |||....++.++++.+++.++.+
T Consensus 23 t~~Cnl~C~~C~~~~~~--~~~~~~~~~~~~i~~~i~~~~~-~~~~i~~sG------GEPll~~~l~~li~~~~~~g~~v 93 (191)
T TIGR02495 23 FQGCNLKCPYCHNPELI--DREGSGEIEVEFLLEFLRSRQG-LIDGVVITG------GEPTLQAGLPDFLRKVRELGFEV 93 (191)
T ss_pred cCCCCCCCCCCCCcccc--CCCCCCcCCHHHHHHHHHHhcC-CCCeEEEEC------CcccCcHhHHHHHHHHHHCCCeE
Confidence 99999999999876321 1122344899999999876532 366787776 56666666888888888777765
Q ss_pred -EEeCCCCCHHHHHHHHHcC-CCeEecCCCchHHHHhccCC-CCCHH-HHHHHHHHHHHcCCceeecEEe--ecCCCHHH
Q 022946 176 -CCTLGMLEKHQAIELKKAG-LTAYNHNLDTSREFYSKIIT-TRSYD-ERLETLKHVREAGINVCSGGII--GLGEAEED 249 (289)
Q Consensus 176 -~~~~g~l~~e~l~~L~~aG-~~~v~i~let~~~~~~~i~~-~~~~~-~~~~~i~~~~~~Gi~v~~~~i~--Glget~ed 249 (289)
..+||. +.+.++++.++| ++.+.+++++.++.+..+.+ +..++ +++++++.+++.|+.+...+++ |..+ .++
T Consensus 94 ~i~TNg~-~~~~l~~l~~~g~~~~v~isl~~~~~~~~~~~g~~~~~~~~~~~~i~~l~~~gi~~~i~~~v~~~~~~-~~e 171 (191)
T TIGR02495 94 KLDTNGS-NPRVLEELLEEGLVDYVAMDVKAPPEKYPELYGLEKNGSNNILKSLEILLRSGIPFELRTTVHRGFLD-EED 171 (191)
T ss_pred EEEeCCC-CHHHHHHHHhcCCCcEEEEeccCChHHHHHHHCCCCchHHHHHHHHHHHHHcCCCEEEEEEEeCCCCC-HHH
Confidence 356886 578889999998 69999999988566666644 45665 9999999999999976554443 5533 678
Q ss_pred HHHHHHHHhcC
Q 022946 250 RVGLLHTLATL 260 (289)
Q Consensus 250 ~~~~l~~l~~l 260 (289)
+.++++++.++
T Consensus 172 i~~~~~~l~~~ 182 (191)
T TIGR02495 172 LAEIATRIKEN 182 (191)
T ss_pred HHHHHHHhccC
Confidence 99999999877
|
This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD. |
| >TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.7e-15 Score=132.52 Aligned_cols=173 Identities=13% Similarity=0.134 Sum_probs=127.7
Q ss_pred eeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc-CCcEEEEecccCCCCCCchh--HHHHHHHHHH
Q 022946 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-GSTRFCMGAAWRDTIGRKTN--FNQILEYVKD 167 (289)
Q Consensus 91 ~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~-g~~~i~i~~~~~~~~ge~~~--~~~l~e~i~~ 167 (289)
++.+ |++|+.+|+||......+ ......++.+++.+.++.+.+. ++..|.|+||+ |.. .+++.++++.
T Consensus 91 ll~v-T~~C~~~Cr~C~r~~~~~--~~~~~~l~~~e~~~~i~~i~~~~~I~~VilSGGD------Pl~~~~~~L~~ll~~ 161 (321)
T TIGR03822 91 LLKP-VHVCPVYCRFCFRREMVG--PEGLGVLSPAELDAAFAYIADHPEIWEVILTGGD------PLVLSPRRLGDIMAR 161 (321)
T ss_pred EEEe-cCCCCCcCcCCCchhhcC--CcccCcCCHHHHHHHHHHHHhCCCccEEEEeCCC------cccCCHHHHHHHHHH
Confidence 3445 999999999998753221 1122336788888888888754 89999888743 432 3567777777
Q ss_pred HHhcC-c---eEEE-----eCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCceee
Q 022946 168 IRDMG-M---EVCC-----TLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCS 237 (289)
Q Consensus 168 ik~~~-~---~i~~-----~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~ 237 (289)
+++.+ + .+.+ ++..++++.++.|+++|+ .+.+++++. ++.. .++.+++++.++++|+.+..
T Consensus 162 l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~-~v~i~l~~~h~~el--------~~~~~~ai~~L~~~Gi~v~~ 232 (321)
T TIGR03822 162 LAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGK-TVYVALHANHAREL--------TAEARAACARLIDAGIPMVS 232 (321)
T ss_pred HHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCC-cEEEEecCCChhhc--------CHHHHHHHHHHHHcCCEEEE
Confidence 77543 2 3332 223478999999999995 578899886 4321 48899999999999998765
Q ss_pred cEE--eecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCC
Q 022946 238 GGI--IGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ 283 (289)
Q Consensus 238 ~~i--~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~ 283 (289)
..+ -|.+++.+++.++++++.++ ++....++.+.|.+||..+..
T Consensus 233 q~vLl~gvNd~~~~l~~l~~~l~~~--gv~pyyl~~~~p~~g~~~f~~ 278 (321)
T TIGR03822 233 QSVLLRGVNDDPETLAALMRAFVEC--RIKPYYLHHLDLAPGTAHFRV 278 (321)
T ss_pred EeeEeCCCCCCHHHHHHHHHHHHhc--CCeeEEEEecCCCCCcccccC
Confidence 433 37799999999999999999 678888999999999876653
|
Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc. |
| >PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.7e-14 Score=127.03 Aligned_cols=178 Identities=17% Similarity=0.292 Sum_probs=136.4
Q ss_pred eccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH---c------C--CcEEEEecccCCCCCCch-hHH
Q 022946 92 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE---A------G--STRFCMGAAWRDTIGRKT-NFN 159 (289)
Q Consensus 92 i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~---~------g--~~~i~i~~~~~~~~ge~~-~~~ 159 (289)
|+. +-||+.+|.||+... .+ -.+.++++||+..+..+.. . | ++.|+|.| .|||+ +++
T Consensus 125 vSs-QvGC~m~C~FCatg~---~g--~~RnLt~~EIv~Qv~~~~~~~~~~~~~~~~~~i~nVvfmG-----mGEPLlN~d 193 (373)
T PRK14459 125 ISS-QAGCGMACPFCATGQ---GG--LTRNLSTAEIVEQVRAAARALRDGEVPGGPGRLSNVVFMG-----MGEPLANYK 193 (373)
T ss_pred EEe-cCCCCCcCCCCCCCC---CC--CCCccCHHHHHHHHHHHHHHhhhcccccCCCceeEEEEec-----CCcchhhHH
Confidence 454 789999999998653 12 2345899999999876643 1 1 56788877 47886 589
Q ss_pred HHHHHHHHHHh-----cCc---eEEE-eCCCCCHHHHHHHHHcCCC-eEecCCCch-HHHHhccCCC---CCHHHHHHHH
Q 022946 160 QILEYVKDIRD-----MGM---EVCC-TLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIITT---RSYDERLETL 225 (289)
Q Consensus 160 ~l~e~i~~ik~-----~~~---~i~~-~~g~l~~e~l~~L~~aG~~-~v~i~let~-~~~~~~i~~~---~~~~~~~~~i 225 (289)
.+.++++.+++ .++ .+.+ |.|.. ..+++|.+.+++ .+.+||.+. ++.++++.|. .+.+++++++
T Consensus 194 ~V~~~i~~l~~~~~~g~gis~r~ITvST~Gl~--~~i~~la~~~l~~~LavSLha~d~e~R~~l~p~n~~~~l~~ll~a~ 271 (373)
T PRK14459 194 RVVAAVRRITAPAPEGLGISARNVTVSTVGLV--PAIRKLADEGLPVTLAVSLHAPDDELRDELVPVNTRWKVDEVLDAA 271 (373)
T ss_pred HHHHHHHHHhCcccccCCccCCEEEEECcCch--hHHHHHHHhcCCeEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHH
Confidence 99999999875 355 4433 46653 467888888886 799999999 9999999983 5789999997
Q ss_pred HHH-HHcCCceee--cEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 226 KHV-REAGINVCS--GGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 226 ~~~-~~~Gi~v~~--~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
+.. ++.|..+.. .+|-|+.++++|..++.++++.+......|.+.+|.|.++.++..
T Consensus 272 ~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIpyNp~~~~~y~~ 331 (373)
T PRK14459 272 RYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIPLNPTPGSKWTA 331 (373)
T ss_pred HHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEccCCCCCCCCcC
Confidence 775 467877554 556688999999999999999873225689999999999887654
|
|
| >PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-14 Score=128.80 Aligned_cols=175 Identities=18% Similarity=0.302 Sum_probs=132.8
Q ss_pred eeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHH--------HHcCCcEEEEecccCCCCCCchh-HHHH
Q 022946 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKA--------KEAGSTRFCMGAAWRDTIGRKTN-FNQI 161 (289)
Q Consensus 91 ~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~--------~~~g~~~i~i~~~~~~~~ge~~~-~~~l 161 (289)
.++. +.|||.+|.||..... +. .+.++.+||++.+..+ ...+++.|+|.| .|||+. ++.+
T Consensus 124 ciSs-q~GCnl~C~FC~tg~~---g~--~rnLt~~EI~~qv~~~~~~~~~~~~~~~v~nIvfmG-----mGEPLln~d~v 192 (368)
T PRK14456 124 CISS-QAGCALRCSFCATGQM---GF--RRNLTAGEITGQVFALSDMLAERNRERGITNIVFMG-----MGEPLLNTDNV 192 (368)
T ss_pred EEEe-cCCCCCCCCCCCCCCC---CC--CCCCCHHHHHHHHHHHHHHHHhhhccCCccEEEEeC-----cCccccCHHHH
Confidence 4565 8899999999986531 22 2347889998886432 135688999987 477854 4569
Q ss_pred HHHHHHHHhc----Cc---eE-EEeCCCCCHHHHHHHHHcCCC-eEecCCCch-HHHHhccCC----CCCHHHHHHHHHH
Q 022946 162 LEYVKDIRDM----GM---EV-CCTLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIIT----TRSYDERLETLKH 227 (289)
Q Consensus 162 ~e~i~~ik~~----~~---~i-~~~~g~l~~e~l~~L~~aG~~-~v~i~let~-~~~~~~i~~----~~~~~~~~~~i~~ 227 (289)
.++++.+++. ++ .+ .+|+|. .+ .+++|.++|++ .+.+|+++. ++.++++.| ..++++++++++.
T Consensus 193 ~~~i~~l~~~~~~~~is~r~ItisT~Gl-~~-~i~~L~~~gl~~~LaiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~ 270 (368)
T PRK14456 193 FEAVLTLSTRKYRFSISQRKITISTVGI-TP-EIDRLATSGLKTKLAVSLHSADQEKRERLMPQAARDYPLDELREALIG 270 (368)
T ss_pred HHHHHHHhccccccCcCcCeeEEECCCC-hH-HHHHHHHcCCCceEEEEecCCCHHHHHHhccccCCCCCHHHHHHHHHH
Confidence 9999888743 22 23 455774 33 47999999996 899999999 999999974 4478999999985
Q ss_pred -HHHcCCce--eecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCC
Q 022946 228 -VREAGINV--CSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ 281 (289)
Q Consensus 228 -~~~~Gi~v--~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~ 281 (289)
+.+.|..+ .+.+|-|+.++.+|+.+++++++.+ +..|.+.+|.|.++.++.
T Consensus 271 ~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~---~~~VnlIpyn~~~~~~~~ 324 (368)
T PRK14456 271 YASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRF---FCKINLIDYNSIVNIKFE 324 (368)
T ss_pred HHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcC---CCeeEEeeeccCCCCCCC
Confidence 67778764 4556668899999999999999987 457888888888888765
|
|
| >PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.6e-14 Score=127.29 Aligned_cols=171 Identities=17% Similarity=0.332 Sum_probs=130.2
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHH----Hc--C---CcEEEEecccCCCCCCch-hHHHHHHHH
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAK----EA--G---STRFCMGAAWRDTIGRKT-NFNQILEYV 165 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~----~~--g---~~~i~i~~~~~~~~ge~~-~~~~l~e~i 165 (289)
..||+.+|.||..... + ..+.++++||++.+.... .. | ++.|+|.| .|||+ .++.+.+++
T Consensus 109 q~GC~~~C~FC~tg~~---g--~~rnlt~~EI~~qv~~~~~~~~~~g~g~~~i~nIvfmG-----mGEPLln~~~v~~~l 178 (354)
T PRK14460 109 QVGCAMGCTFCSTGTM---G--FERNMTMGEILGQVLVAREHLGDNGPDHPILRNLVFMG-----MGEPLLNLDEVMRSL 178 (354)
T ss_pred CCCcCCCCccCCCCCC---C--CCcCCCHHHHHHHHHHHHHHHhhccCCCcceeEEEEec-----CCcccCCHHHHHHHH
Confidence 6799999999976531 1 234589999999984332 12 3 57788877 35663 567888999
Q ss_pred HHHHh-cCc-----eE-EEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCC---CCHHHHHHHHHHH-HHcCC
Q 022946 166 KDIRD-MGM-----EV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITT---RSYDERLETLKHV-REAGI 233 (289)
Q Consensus 166 ~~ik~-~~~-----~i-~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~---~~~~~~~~~i~~~-~~~Gi 233 (289)
+.+++ .|+ ++ ..|+|. .+.++.|.++|+..+.+++++. ++.++++.+. .+.++++++++.. .+.|-
T Consensus 179 ~~l~~~~Gl~~~~r~itvsT~G~--~~~i~~L~~~~l~~L~iSLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~~~~ 256 (354)
T PRK14460 179 RTLNNEKGLNFSPRRITVSTCGI--EKGLRELGESGLAFLAVSLHAPNQELRERIMPKAARWPLDDLIAALKSYPLKTRE 256 (354)
T ss_pred HHHhhhhccCCCCCeEEEECCCC--hHHHHHHHhCCCcEEEEeCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhcCC
Confidence 98873 354 23 456886 6678999999999999999999 9999999875 3788899888764 44555
Q ss_pred c--eeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCC
Q 022946 234 N--VCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ 281 (289)
Q Consensus 234 ~--v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~ 281 (289)
. +...+|-|+.++++|+.+++++++.++ ..|.+.+|.|.+|.++.
T Consensus 257 ~v~iey~LI~GvNDs~ed~~~l~~~l~~~~---~~VnLIpyn~~~g~~y~ 303 (354)
T PRK14460 257 RVTFEYLLLGGVNDSLEHARELVRLLSRTK---CKLNLIVYNPAEGLPYS 303 (354)
T ss_pred eEEEEEEEECCCCCCHHHHHHHHHHHhcCC---CcEEEEcCCCCCCCCCC
Confidence 4 445666688999999999999999883 47899999999998874
|
|
| >PRK13745 anaerobic sulfatase-maturase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.2e-14 Score=128.90 Aligned_cols=182 Identities=10% Similarity=0.173 Sum_probs=125.5
Q ss_pred eEeeccccCCCCcCCCCCCCCCCCCCC-CCCcCCCCHHHHHHHHHHHHH-cCCcEEE--EecccCCCCCCchhHHHHHHH
Q 022946 89 CTLLSIKTGGCSEDCSYCPQSSRYDTG-VKGQKLMTKDAVMQAAQKAKE-AGSTRFC--MGAAWRDTIGRKTNFNQILEY 164 (289)
Q Consensus 89 ~~~i~~~t~~C~~~C~fC~~~~~~~~~-~~~~~~~~~eei~~~~~~~~~-~g~~~i~--i~~~~~~~~ge~~~~~~l~e~ 164 (289)
...+...+..||++|.||+........ ......|+.+++.+.++++.+ .+...+. ++|| +++......+..++++
T Consensus 14 ~~~~kp~~~~CNl~C~yC~~~~~~~~~~~~~~~~ms~e~~~~~i~~~~~~~~~~~v~i~f~GG-EPlL~~~~~~~~~~~~ 92 (412)
T PRK13745 14 YIMLKPVGAVCNLACDYCYYLEKSKLYQENPKHVMSDELLEKFIKEYINSQTMPQVLFTWHGG-ETLMRPLSFYKKALEL 92 (412)
T ss_pred EEEEeecCCCcCCCCcccCCcCCCcccccCccCCCCHHHHHHHHHHHHHcCCCCeEEEEEEcc-ccCCCcHHHHHHHHHH
Confidence 334555246999999999975321100 012234899999999888775 3555544 4542 2222211234445555
Q ss_pred HHHHH-hcCceE-EEeCCC-CCHHHHHHHHHcCCCeEecCCCchHHHHhccCC----CCCHHHHHHHHHHHHHcCCceee
Q 022946 165 VKDIR-DMGMEV-CCTLGM-LEKHQAIELKKAGLTAYNHNLDTSREFYSKIIT----TRSYDERLETLKHVREAGINVCS 237 (289)
Q Consensus 165 i~~ik-~~~~~i-~~~~g~-l~~e~l~~L~~aG~~~v~i~let~~~~~~~i~~----~~~~~~~~~~i~~~~~~Gi~v~~ 237 (289)
++... ..++.+ ..|||+ ++++.++.|++.|+ .|.+|+|+.+++++..++ ..+|+.++++|+.+++.|+.+++
T Consensus 93 ~~~~~~~~~i~~~i~TNG~ll~~e~~~~l~~~~~-~v~ISlDG~~~~hD~~R~~~~g~gsf~~v~~~i~~l~~~gi~~~i 171 (412)
T PRK13745 93 QKKYARGRQIDNCIQTNGTLLTDEWCEFFRENNF-LVGVSIDGPQEFHDEYRKNKMGKPSFVKVMKGINLLKKHGVEWNA 171 (412)
T ss_pred HHHHcCCCceEEEEeecCEeCCHHHHHHHHHcCe-EEEEEecCCHHHhhhhcCCCCCCccHHHHHHHHHHHHHcCCCEEE
Confidence 54332 345553 356775 78999999999997 999999999777777663 35899999999999999998766
Q ss_pred cEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceec
Q 022946 238 GGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAV 275 (289)
Q Consensus 238 ~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~ 275 (289)
..++. .++.+++.+.++++.++ +...+.+.+++|.
T Consensus 172 ~~vv~-~~n~~~~~e~~~~~~~l--g~~~~~~~p~~~~ 206 (412)
T PRK13745 172 MAVVN-DFNADYPLDFYHFFKEL--DCHYIQFAPIVER 206 (412)
T ss_pred EEEEc-CCccccHHHHHHHHHHc--CCCeEEEEeccCc
Confidence 54443 66777888999999999 6888988888873
|
|
| >PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-13 Score=121.51 Aligned_cols=173 Identities=18% Similarity=0.299 Sum_probs=128.3
Q ss_pred eccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc-C-----CcEEEEecccCCCCCCc-hhHHHHHHH
Q 022946 92 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-G-----STRFCMGAAWRDTIGRK-TNFNQILEY 164 (289)
Q Consensus 92 i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~-g-----~~~i~i~~~~~~~~ge~-~~~~~l~e~ 164 (289)
|+. +.||+.+|.||..... + ..+.++.+||++.+...... | ++.|+|.| .||| .+++.+.+.
T Consensus 97 vSs-q~GC~l~C~fC~tg~~---g--~~r~Lt~~EI~~qv~~~~~~~g~~~~~i~~Vvf~G-----mGEPlln~~~v~~~ 165 (343)
T PRK14468 97 VST-MVGCPAGCAFCATGAM---G--FGRNLTAAEILDQVLAVAGHEGISPREIRNVVLMG-----MGEPLLNYENVLKA 165 (343)
T ss_pred EEe-cCCCCCcCCCCCCCCC---C--CCCCCCHHHHHHHHHHHHhhcCcCcCCccEEEEec-----cCccccCHHHHHHH
Confidence 444 7899999999986531 1 23458999999988655432 2 56788887 3566 356888888
Q ss_pred HHHHH-hcCc-----eE-EEeCCCCCHHHHHHHHHcCCC-eEecCCCch-HHHHhccCC---CCCHHHHHHHHHHH-HHc
Q 022946 165 VKDIR-DMGM-----EV-CCTLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIIT---TRSYDERLETLKHV-REA 231 (289)
Q Consensus 165 i~~ik-~~~~-----~i-~~~~g~l~~e~l~~L~~aG~~-~v~i~let~-~~~~~~i~~---~~~~~~~~~~i~~~-~~~ 231 (289)
++.+. ..++ .+ ..|+|. .+.+++|.+.+++ .+.+|+++. ++.++++.+ ..++++++++++.. ++.
T Consensus 166 i~~l~~~~g~~l~~r~itvST~G~--~~~i~~L~~~~l~~~LaiSL~a~d~e~r~~i~p~~~~~~l~~ll~~l~~~~~~~ 243 (343)
T PRK14468 166 ARIMLHPQALAMSPRRVTLSTVGI--PKGIRRLAEEDLGVRLALSLHAPDEETRQRIIPTAHRYSIAEIMAAVRHYQAVT 243 (343)
T ss_pred HHHhcccccccccCceEEEECCCC--hHHHHHHHHhCcCcEEEEEcCCCCHHHHHHhccccccCCHHHHHHHHHHHHHhc
Confidence 88774 3333 23 456784 4678889998887 689999999 999999985 34789999999854 445
Q ss_pred CCcee--ecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCC
Q 022946 232 GINVC--SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 280 (289)
Q Consensus 232 Gi~v~--~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl 280 (289)
+..+. ..+|-|+.++.+|+..+.++++.+ ...|.+.+|.|.++..+
T Consensus 244 ~~~V~ieyvLI~GvNDs~e~~~~L~~ll~~~---~~~VnLIPynp~~~~~~ 291 (343)
T PRK14468 244 GRRVTLEYTMLKGVNDHLWQAELLADLLRGL---VSHVNLIPFNPWEGSPF 291 (343)
T ss_pred CCeEEEEEEEeCCCcCCHHHHHHHHHHHhcC---CcEEEEEcCCCCCCCCC
Confidence 65554 555668899999999999999988 35788888888776544
|
|
| >COG0731 Fe-S oxidoreductases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.8e-14 Score=120.51 Aligned_cols=169 Identities=18% Similarity=0.304 Sum_probs=134.8
Q ss_pred CCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc------CCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc
Q 022946 98 GCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA------GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM 171 (289)
Q Consensus 98 ~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~------g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~ 171 (289)
.|+++|.||...........+..+...+.|.+..+.+..+ .+++++|++ .|||+.+.++-++++.+++.
T Consensus 33 ~Cs~~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~-----~GEPTLy~~L~elI~~~k~~ 107 (296)
T COG0731 33 WCSYNCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKGDEATEPDHVTISL-----SGEPTLYPNLGELIEEIKKR 107 (296)
T ss_pred hhcCCCeEEecccCCCCCCCCCceecHHHHHHHHHHHhcccccccCCCCEEEEeC-----CCCcccccCHHHHHHHHHhc
Confidence 7999999998743222222345557889999999887765 578888887 47898999999999999988
Q ss_pred C-ce-EEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCC---CHHHHHHHHHHHHHc--CCc-eeecEEee
Q 022946 172 G-ME-VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTR---SYDERLETLKHVREA--GIN-VCSGGIIG 242 (289)
Q Consensus 172 ~-~~-i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~---~~~~~~~~i~~~~~~--Gi~-v~~~~i~G 242 (289)
+ +. +.+|||.+ +++++.|. -.|.+++++++. ++.|+++++++ +++.+++.++.+++. |-- +.++++=|
T Consensus 108 g~~~tflvTNgsl-pdv~~~L~--~~dql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L~~~~~~~~~~~vir~tlvkg 184 (296)
T COG0731 108 GKKTTFLVTNGSL-PDVLEELK--LPDQLYVSLDAPDEKTFRRINRPHKKDSWEKILEGLEIFRSEYKGRTVIRTTLVKG 184 (296)
T ss_pred CCceEEEEeCCCh-HHHHHHhc--cCCEEEEEeccCCHHHHHHhcCCCCcchHHHHHHHHHHhhhcCCCcEEEEEEEecc
Confidence 7 44 56889988 88888888 379999999999 99999999864 699999999999996 332 44556667
Q ss_pred cCCCHHHHHHHHHHHhcCCCCCCeeeeccceecC
Q 022946 243 LGEAEEDRVGLLHTLATLPTHPESVPINALLAVK 276 (289)
Q Consensus 243 lget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~p 276 (289)
+..+.+++.+..+++... .|+.|.+..++-.|
T Consensus 185 ~N~~~e~~~~~a~ll~~~--~Pd~velk~~~rpg 216 (296)
T COG0731 185 INDDEEELEEYAELLERI--NPDFVELKTYMRPG 216 (296)
T ss_pred ccCChHHHHHHHHHHHhc--CCCeEEEecCccCC
Confidence 788888899999999988 68999988876433
|
|
| >PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-13 Score=121.67 Aligned_cols=170 Identities=18% Similarity=0.306 Sum_probs=126.6
Q ss_pred eccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH---cCCcEEEEecccCCCCCCchh-HHHHHHHHHH
Q 022946 92 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE---AGSTRFCMGAAWRDTIGRKTN-FNQILEYVKD 167 (289)
Q Consensus 92 i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~---~g~~~i~i~~~~~~~~ge~~~-~~~l~e~i~~ 167 (289)
|+. +.||+.+|.||..... +. .+.++.+||++.+..+.. .++..|+|.| .|||+. ++.+.++++.
T Consensus 105 iss-q~GC~l~C~fC~tg~~---g~--~r~lt~~EI~~qv~~~~~~~~~~v~~Vvf~G-----mGEPLln~d~v~~~i~~ 173 (343)
T PRK14469 105 IST-QVGCPVKCIFCATGQS---GF--VRNLTTGEIVSQILAMEKEEKKKVGNVVYMG-----MGEPLLNYENVIKSIKI 173 (343)
T ss_pred EEe-cCCCCCcCcCCCCCCC---Cc--cccCCHHHHHHHHHHHHHhccCCcCeEEEEc-----cChhhhhHHHHHHHHHH
Confidence 454 7899999999986531 11 234789999998865432 3578898887 367754 5678888888
Q ss_pred HHh-----cCc-eE-EEeCCCCCHHHHHHHHHcCCC-eEecCCCch-HHHHhccCC---CCCHHHHHHHHHHHHH-cCCc
Q 022946 168 IRD-----MGM-EV-CCTLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVRE-AGIN 234 (289)
Q Consensus 168 ik~-----~~~-~i-~~~~g~l~~e~l~~L~~aG~~-~v~i~let~-~~~~~~i~~---~~~~~~~~~~i~~~~~-~Gi~ 234 (289)
++. .+. .+ .+|+|. .+.++.|.+.|++ .+.+|+++. ++.++++.+ ..++++++++++.+.+ .+..
T Consensus 174 l~~~~~~~~g~~~itisTnG~--~~~i~~L~~~~l~~~LaiSL~a~~~e~r~~i~p~~~~~~l~~Il~~l~~~~~~~~~~ 251 (343)
T PRK14469 174 LNHKKMKNIGIRRITISTVGI--PEKIIQLAEEGLDVKLALSLHAPTNFKRDQIVPLNKKYSIEEIINAVKIYQKKTGNR 251 (343)
T ss_pred HhchhcccCCCCeEEEECCCC--hHHHHHHHhhCCCcEEEEEeCCCCHHHHHhhcCcCCCCCHHHHHHHHHHHHHHhCCe
Confidence 752 233 33 356785 6778999999998 799999999 999998765 4689999999997655 4555
Q ss_pred ee--ecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCC
Q 022946 235 VC--SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 277 (289)
Q Consensus 235 v~--~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pg 277 (289)
+. ..+|-|+.++.+|+.++.++++.++ ..|.+.+|.|.++
T Consensus 252 v~i~yvlI~g~NDs~ed~~~La~llk~~~---~~VnLIpynp~~~ 293 (343)
T PRK14469 252 VTIEYILIKGFNDEIEDAKKLAELLKGLK---VFVNLIPVNPTVP 293 (343)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHHhccC---cEEEEEecCCCCc
Confidence 44 4566688899999999999999883 4677878877655
|
|
| >PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.5e-13 Score=121.28 Aligned_cols=175 Identities=15% Similarity=0.303 Sum_probs=130.9
Q ss_pred eccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH------cCCcEEEEecccCCCCCCch-hHHHHHHH
Q 022946 92 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE------AGSTRFCMGAAWRDTIGRKT-NFNQILEY 164 (289)
Q Consensus 92 i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~------~g~~~i~i~~~~~~~~ge~~-~~~~l~e~ 164 (289)
|+. ..||+.+|.||..... + ..+.++++||++.+..... .|++.|++.| .|||. +++.+.++
T Consensus 113 iSs-qvGC~~~C~FC~t~~~---~--~~r~lt~~EIv~qv~~~~~~~~~~g~~v~~Vv~~G-----mGEPLln~~~v~~~ 181 (356)
T PRK14455 113 VTT-QVGCRIGCTFCASTLG---G--LKRDLEAGEIVAQVMLVQKYLDETEERVSHIVVMG-----IGEPFDNYDNVMDF 181 (356)
T ss_pred EEC-CCCCCCCCCcCCCCCC---C--CCccCCHHHHHHHHHHHHHHHhhcCCCcceEEEec-----cccccCCHHHHHHH
Confidence 444 6799999999987632 1 2445899999998875432 3577888877 36775 47999999
Q ss_pred HHHHHh-cCc-----eE-EEeCCCCCHHHHHHHHHcCCC-eEecCCCch-HHHHhccCC---CCCHHHHHHHHHHHHH-c
Q 022946 165 VKDIRD-MGM-----EV-CCTLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVRE-A 231 (289)
Q Consensus 165 i~~ik~-~~~-----~i-~~~~g~l~~e~l~~L~~aG~~-~v~i~let~-~~~~~~i~~---~~~~~~~~~~i~~~~~-~ 231 (289)
++.+++ .|+ .+ ..|+|.. ..+..+.+.++. .+.+++++. ++.++++.+ ..+.++++++++.+.+ .
T Consensus 182 l~~l~~~~g~~~s~r~itvsT~G~~--~~i~~l~d~~l~~~LaiSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~ 259 (356)
T PRK14455 182 LRIINDDKGLAIGARHITVSTSGIA--PKIYDFADEGLQINLAISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKT 259 (356)
T ss_pred HHHHhcccCcccCCCceEEEecCch--HhHHHHHhcccCeeEEeccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhc
Confidence 999984 455 33 4567865 346667776654 356899999 999998765 4578999999998765 5
Q ss_pred CCcee--ecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 232 GINVC--SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 232 Gi~v~--~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
|..+. ..+|-|+.++.+|+.++.++++.+ ...|.+.+|.|.++.++..
T Consensus 260 ~~~v~iey~lI~gvNDs~ed~~~La~ll~~l---~~~VnLIPynp~~~~ky~~ 309 (356)
T PRK14455 260 NRRVTFEYILLGGVNDQVEHAEELADLLKGI---KCHVNLIPVNPVPERDYVR 309 (356)
T ss_pred CCeEEEEEEEeCCCCCCHHHHHHHHHHHhcC---CCcEEEEecCcCCCCCCcC
Confidence 55554 455667899999999999999988 3678899999998876644
|
|
| >TIGR00048 radical SAM enzyme, Cfr family | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.7e-13 Score=120.99 Aligned_cols=171 Identities=15% Similarity=0.277 Sum_probs=127.6
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH------cCCcEEEEecccCCCCCCch-hHHHHHHHHHHH
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE------AGSTRFCMGAAWRDTIGRKT-NFNQILEYVKDI 168 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~------~g~~~i~i~~~~~~~~ge~~-~~~~l~e~i~~i 168 (289)
..||+++|.||+.... + ..+.++.+||++.+..+.. .+++.|+|.| .|||. +++.+.++++.+
T Consensus 112 Q~GC~l~C~fC~t~~~---g--~~r~lt~~Eiv~qv~~~~~~~~~~~~~v~nVvfmG-----mGEPLln~d~v~~~l~~l 181 (355)
T TIGR00048 112 QVGCALGCTFCATAKG---G--FNRNLEASEIIGQVLRVQKINNETGERVSNVVFMG-----MGEPLLNLNEVVKAMEIM 181 (355)
T ss_pred CCCCCCcCCCCCCCCC---C--CCCCCCHHHHHHHHHHHHHHhhhcCCCeeEEEEec-----CCchhhCHHHHHHHHHHh
Confidence 6789999999987531 1 2244799999987755432 2467788877 36774 557888888887
Q ss_pred Hh-cC--c---eE-EEeCCCCCHHHHHHHHHcCCC-eEecCCCch-HHHHhccCC---CCCHHHHHHHHHH-HHHcCCce
Q 022946 169 RD-MG--M---EV-CCTLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIIT---TRSYDERLETLKH-VREAGINV 235 (289)
Q Consensus 169 k~-~~--~---~i-~~~~g~l~~e~l~~L~~aG~~-~v~i~let~-~~~~~~i~~---~~~~~~~~~~i~~-~~~~Gi~v 235 (289)
++ .+ + .+ ..|+|.+ +.+++|.+.+++ .+.+++++. ++.++++.+ ..++++++++++. +++.|.++
T Consensus 182 ~~~~g~~i~~~~itisT~G~~--~~i~~l~~~~l~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~V 259 (355)
T TIGR00048 182 NDDFGLGISKRRITISTSGVV--PKIDILADKMLQVALAISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRV 259 (355)
T ss_pred hcccccCcCCCeEEEECCCch--HHHHHHHHhCCCcEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEE
Confidence 63 33 4 33 4568865 568888887887 578999999 999999876 3468999988876 56678765
Q ss_pred e--ecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCC
Q 022946 236 C--SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ 281 (289)
Q Consensus 236 ~--~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~ 281 (289)
+ ..+|-|+.++.+++..+.++++.++ ..|.+.+|.|+++.++.
T Consensus 260 tieyvLI~GvNDs~e~a~~La~llk~l~---~~VnLIPynp~~~~~~~ 304 (355)
T TIGR00048 260 TFEYVLLDGVNDQVEHAEELAELLKGTK---CKVNLIPWNPFPEADYE 304 (355)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcCC---CceEEEecccCCCCCCC
Confidence 5 4556688999999999999999883 57888888888877663
|
A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains. |
| >PRK13758 anaerobic sulfatase-maturase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-13 Score=124.32 Aligned_cols=166 Identities=13% Similarity=0.184 Sum_probs=117.5
Q ss_pred cCCCCcCCCCCCCCCCCCCC-CCCcCCCCHHHHHHHHHHHHHc--CCcEEEEecccCCCCCCchhH--HHHHHHHHHHHh
Q 022946 96 TGGCSEDCSYCPQSSRYDTG-VKGQKLMTKDAVMQAAQKAKEA--GSTRFCMGAAWRDTIGRKTNF--NQILEYVKDIRD 170 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~-~~~~~~~~~eei~~~~~~~~~~--g~~~i~i~~~~~~~~ge~~~~--~~l~e~i~~ik~ 170 (289)
|..||++|.||......... ......|+.+.+.+.++.+.+. +...|.|.| |||+.. +.+.++++.+++
T Consensus 12 t~~CNl~C~yC~~~~~~~~~~~~~~~~m~~~~~~~~i~~~~~~~~~~~~i~~~G------GEPll~~~~~~~~~~~~~~~ 85 (370)
T PRK13758 12 SSGCNLKCTYCFYHSLSDNRNVKSYGIMRDEVLESMVKRVLNEAEGHCSFAFQG------GEPTLAGLEFFEELMELQRK 85 (370)
T ss_pred CCCcCCCCcccCCcCccccccccccCCCCHHHHHHHHHHHHhccCCceEEEEEC------CccccCChHHHHHHHHHHHH
Confidence 58999999999876322111 1122348888888877766554 334566665 566443 344566665554
Q ss_pred cC---ce---EEEeCCC-CCHHHHHHHHHcCCCeEecCCCchHHHHhccCC----CCCHHHHHHHHHHHHHcCCceeecE
Q 022946 171 MG---ME---VCCTLGM-LEKHQAIELKKAGLTAYNHNLDTSREFYSKIIT----TRSYDERLETLKHVREAGINVCSGG 239 (289)
Q Consensus 171 ~~---~~---i~~~~g~-l~~e~l~~L~~aG~~~v~i~let~~~~~~~i~~----~~~~~~~~~~i~~~~~~Gi~v~~~~ 239 (289)
.+ +. ..+|||+ ++++.++.|++.|+ .|.+|+|+.++.++..++ ..+|+.++++|+.+++.|+.+...+
T Consensus 86 ~~~~~~~~~~~i~TNG~ll~~~~~~~l~~~~~-~v~iSlDg~~~~hd~~R~~~~g~~~f~~v~~~i~~l~~~~~~~~i~~ 164 (370)
T PRK13758 86 HNYKNLKIYNSLQTNGTLIDESWAKFLSENKF-LVGLSMDGPKEIHNLNRKDCCGLDTFSKVERAAELFKKYKVEFNILC 164 (370)
T ss_pred hccCCCeEEEEEEecCEecCHHHHHHHHHcCc-eEEEeecCCHHHhccccCCCCCCccHHHHHHHHHHHHHhCCCceEEE
Confidence 33 32 2467885 78899999999987 899999999777887763 4689999999999999998877666
Q ss_pred EeecCCCHHHHHHHHHHHhcCCCCCCeeeecc
Q 022946 240 IIGLGEAEEDRVGLLHTLATLPTHPESVPINA 271 (289)
Q Consensus 240 i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~ 271 (289)
++. ..+.+++.++++++.++ +...+.+..
T Consensus 165 ~v~-~~n~~~l~~i~~~~~~~--g~~~~~~~~ 193 (370)
T PRK13758 165 VVT-SNTARHVNKIYKYFKEK--DFKFLQFIN 193 (370)
T ss_pred Eec-cccccCHHHHHHHHHHc--CCCeEeeee
Confidence 665 45677888899999888 566666543
|
|
| >PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.1e-13 Score=118.09 Aligned_cols=170 Identities=18% Similarity=0.240 Sum_probs=127.5
Q ss_pred eccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH---cCCcEEEEecccCCCCCCchh-HHHHHHHHHH
Q 022946 92 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE---AGSTRFCMGAAWRDTIGRKTN-FNQILEYVKD 167 (289)
Q Consensus 92 i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~---~g~~~i~i~~~~~~~~ge~~~-~~~l~e~i~~ 167 (289)
|+. +.||+++|.||..... +.. +.++.+||++.+..... ..++.|+|.| .|||+. ++.+.++++.
T Consensus 101 vSs-q~GC~l~C~fC~tg~~---g~~--r~l~~~EI~~qi~~~~~~~~~~i~nIvfmG-----mGEPllN~d~v~~~i~~ 169 (336)
T PRK14470 101 LSS-QAGCALGCAFCATGKL---GLD--RSLRSWEIVAQLLAVRADSERPITGVVFMG-----QGEPFLNYDEVLRAAYA 169 (336)
T ss_pred EeC-CCCcCCCCccccCCCC---CCC--CCCCHHHHHHHHHHHHHhcCCCCCEEEEEe-----cCccccCHHHHHHHHHH
Confidence 444 7899999999988642 222 33588888888765543 2578899987 477854 6889999888
Q ss_pred HHh-c-----CceE-EEeCCCCCHHHHHHHHHcCC-CeEecCCCch-HHHHhccCCC---CCHHHHHHHHHHHHHcCCce
Q 022946 168 IRD-M-----GMEV-CCTLGMLEKHQAIELKKAGL-TAYNHNLDTS-REFYSKIITT---RSYDERLETLKHVREAGINV 235 (289)
Q Consensus 168 ik~-~-----~~~i-~~~~g~l~~e~l~~L~~aG~-~~v~i~let~-~~~~~~i~~~---~~~~~~~~~i~~~~~~Gi~v 235 (289)
++. . +..+ ..|+|.. ..+.+|.+.|. +.+.+|+++. ++.++++.+. .++++++++++.+.+.|-.+
T Consensus 170 l~~~~~~~~~~~~ItVsTnG~~--p~i~~l~~~~~~~~LaiSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~~~rri 247 (336)
T PRK14470 170 LCDPAGARIDGRRISISTAGVV--PMIRRYTAEGHKFRLCISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAALRGRV 247 (336)
T ss_pred HhCccccccCCCceEEEecCCh--HHHHHHHhcCCCceEEEecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhCCCe
Confidence 873 1 2233 3568864 35666666665 7899999999 9999999874 57999999999988877654
Q ss_pred --eecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCC
Q 022946 236 --CSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 277 (289)
Q Consensus 236 --~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pg 277 (289)
...+|-|+.++++|+.++.++++.+ ...+.+.+|+|.++
T Consensus 248 ~ieyvLI~GvNDseeda~~La~llk~l---~~~vnlI~~N~~~~ 288 (336)
T PRK14470 248 TLEYVMISGVNVGEEDAAALGRLLAGI---PVRLNPIAVNDATG 288 (336)
T ss_pred EEEEEEEecccCCHHHHHHHHHHHhcC---CCeEEEeccCCCCC
Confidence 4456678899999999999999987 35778888888665
|
|
| >COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3e-13 Score=115.83 Aligned_cols=168 Identities=20% Similarity=0.284 Sum_probs=126.5
Q ss_pred cCCCCcCCCCCCCCCCCCC-CCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCc-hhHHHHHHHHHHHHhcCc
Q 022946 96 TGGCSEDCSYCPQSSRYDT-GVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-TNFNQILEYVKDIRDMGM 173 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~-~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~-~~~~~l~e~i~~ik~~~~ 173 (289)
+.|||++|.||..+..... .......++++++.+.. ....+...|+++| ||| ...+.+.++++.+|+.|+
T Consensus 42 ~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~--~~~~~~~gvt~SG------GEP~~q~e~~~~~~~~ake~Gl 113 (260)
T COG1180 42 LQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKA--FYSESGGGVTFSG------GEPTLQAEFALDLLRAAKERGL 113 (260)
T ss_pred eCCCCCCCCCCCChhHhcccccCchhhcCHHHHHHHh--hhcCCCCEEEEEC------CcchhhHHHHHHHHHHHHHCCC
Confidence 7899999999987754321 11112223434433331 1223667788876 567 577999999999998898
Q ss_pred eE-EEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCcee--ecEEeecCCCHHH
Q 022946 174 EV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVC--SGGIIGLGEAEED 249 (289)
Q Consensus 174 ~i-~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~--~~~i~Glget~ed 249 (289)
.+ ..|||.++++.+++|.+. +|.+.+.+.+. ++.|+++..... +.++++++.+.+.|+.+. ..++-|+.++.++
T Consensus 114 ~~~l~TnG~~~~~~~~~l~~~-~D~v~~DlK~~~~~~y~~~tg~~~-~~vl~~~~~l~~~g~~ve~r~lviPg~~d~~e~ 191 (260)
T COG1180 114 HVALDTNGFLPPEALEELLPL-LDAVLLDLKAFDDELYRKLTGADN-EPVLENLELLADLGVHVEIRTLVIPGYNDDEEE 191 (260)
T ss_pred cEEEEcCCCCCHHHHHHHHhh-cCeEEEeeccCChHHHHHHhCCCc-HHHHHHHHHHHcCCCeEEEEEEEECCCCCCHHH
Confidence 85 568999999999999998 99999999999 888999886555 999999999999998754 4556677789999
Q ss_pred HHHHHHHHhcCCCCCCeeeecccee
Q 022946 250 RVGLLHTLATLPTHPESVPINALLA 274 (289)
Q Consensus 250 ~~~~l~~l~~l~~~~~~v~i~~~~p 274 (289)
+.+.++++.++. ....+.+.+|.|
T Consensus 192 i~~i~~~i~~~~-~~~p~~~l~fhp 215 (260)
T COG1180 192 IRELAEFIADLG-PEIPIHLLRFHP 215 (260)
T ss_pred HHHHHHHHHhcC-CcccEEEecccc
Confidence 999999999864 345566666655
|
|
| >KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.8e-14 Score=117.47 Aligned_cols=176 Identities=20% Similarity=0.343 Sum_probs=133.3
Q ss_pred EeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH
Q 022946 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169 (289)
Q Consensus 90 ~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik 169 (289)
+++- ++.-|...|+||++....+ +.+ +++.|-.+.++.+.+.|+..|++++.+++... +..-..+.+.++.+|
T Consensus 113 TIMl-mGDTCTRGCRFCsVKTsR~----PpP-lDp~EPeNTAeAIasWgl~YiVlTSVDRDDlp-DgGa~HiAkTVq~iK 185 (360)
T KOG2672|consen 113 TIML-MGDTCTRGCRFCSVKTSRN----PPP-LDPNEPENTAEAIASWGLDYIVLTSVDRDDLP-DGGANHIAKTVQKIK 185 (360)
T ss_pred EEEe-ecCccccCcceeeeecCCC----CcC-CCCCCcccHHHHHHHcCCCeEEEEecccccCc-CcchHHHHHHHHHHH
Confidence 3343 4889999999999864322 222 44555556666777899999999888776542 234467888888888
Q ss_pred hcCceE----EEeCCCCCHHHHHHHHHcCCCeEecCCCchHHHHhccCC-CCCHHHHHHHHHHHHHc--CCceeecEEee
Q 022946 170 DMGMEV----CCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIIT-TRSYDERLETLKHVREA--GINVCSGGIIG 242 (289)
Q Consensus 170 ~~~~~i----~~~~g~l~~e~l~~L~~aG~~~v~i~let~~~~~~~i~~-~~~~~~~~~~i~~~~~~--Gi~v~~~~i~G 242 (289)
....++ .+....-+-+.++.+...|+|.+.+++||.+++-..++- ..+|.+-+.+++.+++. ++-..+.+|+|
T Consensus 186 ~k~p~ilvE~L~pDF~Gd~~~Ve~va~SGLDV~AHNvETVe~Ltp~VRD~RA~yrQSL~VLk~aK~~~P~litktsiMlg 265 (360)
T KOG2672|consen 186 EKAPEILVECLTPDFRGDLKAVEKVAKSGLDVYAHNVETVEELTPFVRDPRANYRQSLSVLKHAKEVKPGLITKTSIMLG 265 (360)
T ss_pred hhCcccchhhcCccccCchHHHHHHHhcCccceecchhhHHhcchhhcCcccchHHhHHHHHHHHhhCCCceehhhhhhc
Confidence 554433 332223456788999999999999999999777766654 45899999999999995 45567889999
Q ss_pred cCCCHHHHHHHHHHHhcCCCCCCeeeecccee
Q 022946 243 LGEAEEDRVGLLHTLATLPTHPESVPINALLA 274 (289)
Q Consensus 243 lget~ed~~~~l~~l~~l~~~~~~v~i~~~~p 274 (289)
+|||+|++..+++.|+.. +++.+.+..|++
T Consensus 266 lgetdeei~~tl~dLr~~--~vdv~t~gqym~ 295 (360)
T KOG2672|consen 266 LGETDEEIKQTLKDLRAA--DVDVVTFGQYMQ 295 (360)
T ss_pred cCCCHHHHHHHHHHHHHc--CCcEEecccccC
Confidence 999999999999999999 688888888765
|
|
| >PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.5e-13 Score=118.66 Aligned_cols=174 Identities=18% Similarity=0.310 Sum_probs=125.1
Q ss_pred eeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-cCCcEEEEecccCCCCCCc-hhHHHHHHHHHHH
Q 022946 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRK-TNFNQILEYVKDI 168 (289)
Q Consensus 91 ~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~g~~~i~i~~~~~~~~ge~-~~~~~l~e~i~~i 168 (289)
.|+. +.||+.+|.||.... . + ..+.++.+||++.+..+.. .+++.|+|.|. ||| .+++.++++++.+
T Consensus 106 cvSs-q~GC~~~C~FC~tg~-~--~--~~r~lt~~EI~~qv~~~~~~~~i~~IvfmG~-----GEPl~n~~~vi~~l~~l 174 (349)
T PRK14463 106 CISS-QVGCAMGCAFCLTGT-F--R--LTRNLTTAEIVNQVCAVKRDVPVRNIVFMGM-----GEPLANLDNVIPALQIL 174 (349)
T ss_pred EEEe-cCCcCCCCccCCCCC-C--C--CCCCCCHHHHHHHHHHHHhcCCccEEEEecC-----CcchhcHHHHHHHHHHh
Confidence 4565 899999999997542 2 1 2345899999998876653 57899999873 455 3567888888887
Q ss_pred Hh-cCc-----eE-EEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCC---CCCHHHHHHHHHHHHHc-CCcee
Q 022946 169 RD-MGM-----EV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVREA-GINVC 236 (289)
Q Consensus 169 k~-~~~-----~i-~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~---~~~~~~~~~~i~~~~~~-Gi~v~ 236 (289)
++ .++ .+ ..|+|.+ + .+.+|.+..-..+.+|+++. ++.++++.+ ..+.++++++++...+. |-.+.
T Consensus 175 ~~~~gl~~s~r~itVsTnGl~-~-~i~~l~~~~~~~LaiSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ 252 (349)
T PRK14463 175 TDPDGLQFSTRKVTVSTSGLV-P-EMEELGREVTVNLAVSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKIT 252 (349)
T ss_pred hcccccCcCCceEEEECCCch-H-HHHHHhhccCeEEEEeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEE
Confidence 63 454 33 3467853 3 34445444323466899999 999999855 45789999988876653 44444
Q ss_pred --ecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCC
Q 022946 237 --SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 280 (289)
Q Consensus 237 --~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl 280 (289)
..+|-|+.++.+++.++.++++.+ ...|.+.+|.|.+|..+
T Consensus 253 ieyvLI~GvNDs~e~~~~L~~ll~~l---~~~vnlIPyn~~~~~~~ 295 (349)
T PRK14463 253 IEYVMIRGLNDSLEDAKRLVRLLSDI---PSKVNLIPFNEHEGCDF 295 (349)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhcc---CceEEEEecCCCCCCCC
Confidence 456667899999999999999998 34788888888877543
|
|
| >PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.3e-13 Score=117.06 Aligned_cols=172 Identities=17% Similarity=0.262 Sum_probs=125.4
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-cCCcEEEEecccCCCCCCch-hHHHHHHHHHHHH-hcC
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKT-NFNQILEYVKDIR-DMG 172 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~g~~~i~i~~~~~~~~ge~~-~~~~l~e~i~~ik-~~~ 172 (289)
+-||+++|.||..... +.. +.++.+||++.+..+.. .+++.|+|.| .|||+ +++.+++.++.++ ..+
T Consensus 110 QvGC~~~C~FC~Tg~~---g~~--rnLt~~EIl~Qv~~~~~~~~i~nIvfmG-----mGEPL~N~d~vi~al~~l~~~~g 179 (345)
T PRK14466 110 QVGCKMNCLFCMTGKQ---GFT--GNLTAAQILNQIYSLPERDKLTNLVFMG-----MGEPLDNLDEVLKALEILTAPYG 179 (345)
T ss_pred CCCCCCCCCCCCCCCC---CCC--CCCCHHHHHHHHHhhhhcCCCCeEEEee-----eCcCcccHHHHHHHHHHHhhccc
Confidence 4599999999986531 222 34899999999987753 3688999987 36674 5688888888876 334
Q ss_pred c-----eE-EEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCC---CCHHHHHHHHHHHHH-cCCce--eecE
Q 022946 173 M-----EV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITT---RSYDERLETLKHVRE-AGINV--CSGG 239 (289)
Q Consensus 173 ~-----~i-~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~---~~~~~~~~~i~~~~~-~Gi~v--~~~~ 239 (289)
+ .+ ..|+|.. +. ++++.+..-..+.+|+.+. ++.++++.|. .+.++++++++...+ .|-.+ ...+
T Consensus 180 ~~~s~r~ItVsT~G~~-~~-i~~l~~~~~~~LavSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~L 257 (345)
T PRK14466 180 YGWSPKRITVSTVGLK-KG-LKRFLEESECHLAISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIV 257 (345)
T ss_pred cCcCCceEEEEcCCCc-hH-HHHHhhccCcEEEEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEE
Confidence 3 33 3457743 22 3333332234678999999 9999999984 468999999998544 44444 4456
Q ss_pred EeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 240 IIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 240 i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
|-|+.++.+|..++.++++.+ ...|++.+|+|.||.++..
T Consensus 258 i~gvND~~e~a~~L~~ll~~~---~~~VNLIp~Np~~~~~~~~ 297 (345)
T PRK14466 258 FKGLNDSLKHAKELVKLLRGI---DCRVNLIRFHAIPGVDLEG 297 (345)
T ss_pred eCCCCCCHHHHHHHHHHHcCC---CceEEEEecCCCCCCCCcC
Confidence 668899999999999999988 4789999999999975443
|
|
| >COG0535 Predicted Fe-S oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3e-13 Score=121.12 Aligned_cols=172 Identities=21% Similarity=0.269 Sum_probs=134.0
Q ss_pred eeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcC-CcEEEEecccCCCCCCchhHHHHHHHHHHHH
Q 022946 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAG-STRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169 (289)
Q Consensus 91 ~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g-~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik 169 (289)
.+++ |+.||.+|.||+...... ....++.++..+.+..+.+.| ...+.++| |||....++.++++.++
T Consensus 22 ~~~~-t~~Cnl~C~~C~~~~~~~----~~~el~~~~~~~~~~~~~~~g~~~~v~~~g------GEPll~~d~~ei~~~~~ 90 (347)
T COG0535 22 GIEL-TNRCNLACKHCYAEAGKK----LPGELSTEEDLRVIDELAELGEIPVVIFTG------GEPLLRPDLLEIVEYAR 90 (347)
T ss_pred EEee-ccccCCcCcccccccCCC----CccccCHHHHHHHHHHHHHcCCeeEEEEeC------CCccccccHHHHHHHHh
Confidence 3455 999999999998764221 123378888888888888888 55555554 67777789999999888
Q ss_pred hc-CceE-EEeCC-CCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCC-CCCHHHHHHHHHHHHHcCCceeecEEeecC
Q 022946 170 DM-GMEV-CCTLG-MLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT-TRSYDERLETLKHVREAGINVCSGGIIGLG 244 (289)
Q Consensus 170 ~~-~~~i-~~~~g-~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~-~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glg 244 (289)
+. ++.+ ..|+| .++.+.++.|+++|++.|.+++|+. ++.++.++. ...++..+++++.+++.|+.+...+.+. .
T Consensus 91 ~~~~~~~~~~TnG~~~~~~~~~~l~~~g~~~v~iSid~~~~e~hd~~rg~~g~~~~~~~~i~~~~~~g~~~~~~~~v~-~ 169 (347)
T COG0535 91 KKGGIRVSLSTNGTLLTEEVLEKLKEAGLDYVSISLDGLDPETHDPIRGVKGVFKRAVEAIKNLKEAGILVVINTTVT-K 169 (347)
T ss_pred hcCCeEEEEeCCCccCCHHHHHHHHhcCCcEEEEEecCCChhhhhhhcCCCcHHHHHHHHHHHHHHcCCeeeEEEEEe-c
Confidence 54 5554 45677 4678999999999999999999999 899888877 5689999999999999999744333332 6
Q ss_pred CCHHHHHHHHHHHhcCCCCCCeeeeccceecC
Q 022946 245 EAEEDRVGLLHTLATLPTHPESVPINALLAVK 276 (289)
Q Consensus 245 et~ed~~~~l~~l~~l~~~~~~v~i~~~~p~p 276 (289)
.+.+++.+.++.+.++ +...+.+..++|..
T Consensus 170 ~n~~~l~~~~~~~~~~--g~~~~~~~~~~~~g 199 (347)
T COG0535 170 INYDELPEIADLAAEL--GVDELNVFPLIPVG 199 (347)
T ss_pred CcHHHHHHHHHHHHHc--CCCEEEEEEEeecc
Confidence 7788999999999999 46778888887754
|
|
| >PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-12 Score=115.76 Aligned_cols=176 Identities=16% Similarity=0.322 Sum_probs=128.6
Q ss_pred eeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH----cCCcEEEEecccCCCCCCc-hhHHHHHHHH
Q 022946 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE----AGSTRFCMGAAWRDTIGRK-TNFNQILEYV 165 (289)
Q Consensus 91 ~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~----~g~~~i~i~~~~~~~~ge~-~~~~~l~e~i 165 (289)
.|+. +.||+.+|.||...+ .+ ..+.++.+||++.+..... .++..|+|.| .||| ..++.+.+++
T Consensus 102 cvSs-q~GC~l~C~FC~t~~---~G--~~rnlt~~EIv~Qv~~~~~~~~~~~v~~VvfmG-----mGEPL~N~d~v~~~l 170 (348)
T PRK14467 102 CVSS-QVGCAVGCKFCATAK---DG--LIRNLRTAEIIDQYIQVQKFLGENRIRNVVFMG-----MGEPLANYENVRKAV 170 (348)
T ss_pred EEEc-CCCCCCcCcCCCCCC---CC--CcCCCCHHHHHHHHHHHHHHhccCCCCeEEEEc-----cChhhcCHHHHHHHH
Confidence 3555 899999999998763 12 2245899999998866554 2478898887 4677 4679999999
Q ss_pred HHHHh-cCc-----eE-EEeCCCCCHHHHHHHHHc----CCCeEecCCCch-HHHHhccCCC---CCHHHHHHHHHHHH-
Q 022946 166 KDIRD-MGM-----EV-CCTLGMLEKHQAIELKKA----GLTAYNHNLDTS-REFYSKIITT---RSYDERLETLKHVR- 229 (289)
Q Consensus 166 ~~ik~-~~~-----~i-~~~~g~l~~e~l~~L~~a----G~~~v~i~let~-~~~~~~i~~~---~~~~~~~~~i~~~~- 229 (289)
+.+++ .|+ .+ ..|+|.. ..++++... .++ +.+|+.+. ++.++++.+. ...++++++++...
T Consensus 171 ~~l~~~~gl~~~~r~itvsT~G~~--~~i~~l~~~~~l~~v~-LalSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~~~~ 247 (348)
T PRK14467 171 QIMTSPWGLDLSKRRITISTSGII--HQIKRMAEDPVMPEVN-LAVSLNASSQKLRERIMPISKTNTLEELMEVLKQYPL 247 (348)
T ss_pred HHHcChhccCcCCCcEEEECCCCh--hHHHHHHhhccccCee-EEEECCCCCHHHHHHhcCCccccCHHHHHHHHHHHHH
Confidence 99973 565 34 3457765 223444432 343 45899999 9999999984 36788888887643
Q ss_pred HcCCcee--ecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCC
Q 022946 230 EAGINVC--SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ 281 (289)
Q Consensus 230 ~~Gi~v~--~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~ 281 (289)
+.|-++. .-+|-|+.++++++.++.+++..++ ....|.+.+|.|+++.++.
T Consensus 248 ~~g~~V~ieyvLIpGvNDs~e~a~~La~~l~~l~-~~~~VnLIPynp~~~~~~~ 300 (348)
T PRK14467 248 PPGRRIMLEYVLIKGVNDSPEDALRLAQLIGKNK-KKFKVNLIPFNPDPELPYE 300 (348)
T ss_pred hcCCeEEEEEEEECCccCCHHHHHHHHHHHhcCC-CceEEEEecCCCCCCCCCC
Confidence 5677655 4556688999999999999999874 2567889999998888764
|
|
| >COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.8e-13 Score=119.81 Aligned_cols=168 Identities=16% Similarity=0.237 Sum_probs=123.2
Q ss_pred cCC-CCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc-CCcE--EEEecccCCCCCCchhH-HHHHHHHHH---
Q 022946 96 TGG-CSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-GSTR--FCMGAAWRDTIGRKTNF-NQILEYVKD--- 167 (289)
Q Consensus 96 t~~-C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~-g~~~--i~i~~~~~~~~ge~~~~-~~l~e~i~~--- 167 (289)
|.. ||++|.||.+..... ..+.|+.+.+.+.++.+... +.+. |++.| |||+.. ..+.+.+..
T Consensus 14 t~~~CNL~C~YC~~~~~~~----~~~~Ms~etle~~i~~~~~~~~~~~v~~~w~G------GEPlL~~~~f~~~~~~l~~ 83 (378)
T COG0641 14 TGFECNLDCKYCFYLEKES----LQRIMSDETLEEYVRQYIAASNGDKVTFTWQG------GEPLLAGLDFYRKAVALQQ 83 (378)
T ss_pred ccCccCCCCCeeCcccCCC----CCCCCCHHHHHHHHHHHHhhCCCCeeEEEEEC------CccccchHHHHHHHHHHHH
Confidence 666 999999999875332 11259999998888887763 4466 44454 555322 344443333
Q ss_pred -HHhcCceE---EEeCCC-CCHHHHHHHHHcCCCeEecCCCchHHHHhccCC----CCCHHHHHHHHHHHHHcCCceeec
Q 022946 168 -IRDMGMEV---CCTLGM-LEKHQAIELKKAGLTAYNHNLDTSREFYSKIIT----TRSYDERLETLKHVREAGINVCSG 238 (289)
Q Consensus 168 -ik~~~~~i---~~~~g~-l~~e~l~~L~~aG~~~v~i~let~~~~~~~i~~----~~~~~~~~~~i~~~~~~Gi~v~~~ 238 (289)
.+. +..+ ..|||+ +++++++.|++.++ .|.++||+.++++++.++ ..+++.++++|+.+++.++.++..
T Consensus 84 k~~~-~~~i~~siqTNg~LL~~e~~e~l~~~~~-~IgISiDGp~eihD~~R~~~~GkgTfd~i~~~i~~L~~~~v~~~~~ 161 (378)
T COG0641 84 KYAN-GKTISNALQTNGTLLNDEWAEFLAEHDF-LIGISIDGPEEIHDKYRVTKSGKGTFDRVMKGLELLQAHGVDFNTL 161 (378)
T ss_pred HHhc-CCeeEEEEEEcccccCHHHHHHHHhcCc-eEEEeccCchHhccccccCCCCCccHHHHHHHHHHHHHcCCcEEEE
Confidence 333 5543 345775 89999999999999 999999999999999884 458999999999999999887776
Q ss_pred EEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCC
Q 022946 239 GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT 278 (289)
Q Consensus 239 ~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgT 278 (289)
.++. .++.++..+.++++.+. +...+.|.+.++..++
T Consensus 162 ~vv~-~~n~~~~~ei~~~l~~~--g~~~i~fip~~~~~~~ 198 (378)
T COG0641 162 TVVN-RQNVLHPEEIYHFLKSE--GSKFIQFIPLVESDNR 198 (378)
T ss_pred EEEc-hhHhhCHHHHHHHHHHc--ccceEEEEecccCCCC
Confidence 6643 78888899999999888 4677777666554444
|
|
| >TIGR03278 methan_mark_10 putative methanogenesis marker protein 10 | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.9e-13 Score=118.70 Aligned_cols=147 Identities=15% Similarity=0.208 Sum_probs=116.7
Q ss_pred CCCCHHHHHHHHHHHHH-c--CCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEE--eCC--CCCHHHHHHHHH
Q 022946 120 KLMTKDAVMQAAQKAKE-A--GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCC--TLG--MLEKHQAIELKK 192 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~-~--g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~--~~g--~l~~e~l~~L~~ 192 (289)
..++++++++++..... + ....+++.|| |+|..++++.++++.+++.++.+.+ |+| ..+.+.++++++
T Consensus 52 ~~~t~~evl~ev~~d~~~~~~~~ggVtisGG-----Gepl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~ 126 (404)
T TIGR03278 52 DFIPPQVVLGEVQTSLGFRTGRDTKVTISGG-----GDVSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLID 126 (404)
T ss_pred CcCCHHHHHHHHHHHHHHhcCCCCEEEEECC-----cccccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHH
Confidence 45799999999987654 2 3467888774 4567779999999999987776543 664 458999999999
Q ss_pred cCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCcee--ecEEeecCCCHHHHHHHHHHHhcCCCCCCeeee
Q 022946 193 AGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVC--SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPI 269 (289)
Q Consensus 193 aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~--~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i 269 (289)
+|++.+.+++++. ++.++++.+....+.+++.++.+.+ ++.+. ..++-|+.++++. .++++++.++ ++..+.+
T Consensus 127 ~gld~v~iSvka~dpe~h~kl~G~~~a~~ILe~L~~L~e-~~~v~~~ivlIPGiND~eel-~~ti~~L~~l--g~~~V~L 202 (404)
T TIGR03278 127 NGVREVSFTVFATDPELRREWMKDPTPEASLQCLRRFCE-SCEVHAASVIIPGVNDGDVL-WKTCADLESW--GAKALIL 202 (404)
T ss_pred cCCCEEEEecccCCHHHHHHHhCCCCHHHHHHHHHHHHh-cCCEEEEEEEeCCccCcHHH-HHHHHHHHHC--CCCEEEE
Confidence 9999999999999 9999998886667999999999988 45544 3445566655554 6999999999 6888888
Q ss_pred ccceec
Q 022946 270 NALLAV 275 (289)
Q Consensus 270 ~~~~p~ 275 (289)
.+|.+.
T Consensus 203 ~~y~~~ 208 (404)
T TIGR03278 203 MRFANT 208 (404)
T ss_pred Eecccc
Confidence 888753
|
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon. |
| >PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.4e-12 Score=114.17 Aligned_cols=171 Identities=16% Similarity=0.324 Sum_probs=128.1
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc---CCcEEEEecccCCCCCCch-hHHHHHHHHHHHHh-
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA---GSTRFCMGAAWRDTIGRKT-NFNQILEYVKDIRD- 170 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~---g~~~i~i~~~~~~~~ge~~-~~~~l~e~i~~ik~- 170 (289)
.-||+.+|.||..... + ..+.++.+||++.+...... +++.|+|.| .|||+ +++.+.++++.+++
T Consensus 108 qvGC~~~C~FC~tg~~---g--~~rnlt~~EIv~qv~~~~~~~~~~~~~IvfmG-----mGEPlln~~~v~~~i~~l~~~ 177 (345)
T PRK14457 108 QVGCPMACDFCATGKG---G--LKRSLKAHEIVDQVLTVQEDMQRRVSHVVFMG-----MGEPLLNIDEVLAAIRCLNQD 177 (345)
T ss_pred CCCCCCcCCcCCCCCC---C--CccccCHHHHHHHHHHHHHHhcCCCCEEEEEe-----cCccccCHHHHHHHHHHHhcc
Confidence 5699999999976531 2 22337999999998776542 578899987 36673 56889999988874
Q ss_pred cCc---eEE-EeCCCCCHHHHHHHHHcC------CC-eEecCCCch-HHHHhccCCC---CCHHHHHHHHHH-HHHcCCc
Q 022946 171 MGM---EVC-CTLGMLEKHQAIELKKAG------LT-AYNHNLDTS-REFYSKIITT---RSYDERLETLKH-VREAGIN 234 (289)
Q Consensus 171 ~~~---~i~-~~~g~l~~e~l~~L~~aG------~~-~v~i~let~-~~~~~~i~~~---~~~~~~~~~i~~-~~~~Gi~ 234 (289)
.++ .+. .|.|. .+.+++|.+.+ .+ .+.+++.+. ++.++++.|. ...++++++++. +.+.|-+
T Consensus 178 ~~i~~r~itvST~G~--~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~ 255 (345)
T PRK14457 178 LGIGQRRITVSTVGV--PKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRR 255 (345)
T ss_pred cCCccCceEEECCCc--hhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCE
Confidence 455 333 45674 34578887776 23 578999999 9999999873 367888877766 6677865
Q ss_pred e--eecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCC
Q 022946 235 V--CSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ 281 (289)
Q Consensus 235 v--~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~ 281 (289)
+ ..-+|-|+.++.+++.++.++++.++ ..|.+.+|.|.++.++.
T Consensus 256 I~iey~LIpGvNDs~e~a~~La~~l~~l~---~~VnLIPynp~~~~~~~ 301 (345)
T PRK14457 256 VSFEYILLGGVNDLPEHAEELANLLRGFQ---SHVNLIPYNPIDEVEFQ 301 (345)
T ss_pred EEEEEEEECCcCCCHHHHHHHHHHHhcCC---CeEEEecCCCCCCCCCC
Confidence 4 45667799999999999999999982 47899999998887664
|
|
| >COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-12 Score=115.54 Aligned_cols=206 Identities=21% Similarity=0.324 Sum_probs=141.9
Q ss_pred HHHHHHHHhhhCCCeeEEeEeeccccCCCCcC----CCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEec
Q 022946 71 FHGAQVHRHAHNFREVQQCTLLSIKTGGCSED----CSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGA 146 (289)
Q Consensus 71 ~~a~~~~r~~~~g~~~~~~~~i~~~t~~C~~~----C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~ 146 (289)
...+.+.+++-+-.. ++..-|+. .+||+.. |+||.-+.. +.. ..+++|.|+++++.+...|+++|-++-
T Consensus 167 ~~GA~vv~qHP~yp~-~vi~EiET-yRGC~r~~~ggCSFCtEp~~---g~~--~~R~~e~Vv~EVkaLY~~GvrhFRlGR 239 (560)
T COG1031 167 PLGAEVVKQHPNYPE-YVICEIET-YRGCPRRVSGGCSFCTEPVR---GRP--EFRPPEDVVEEVKALYRAGVRHFRLGR 239 (560)
T ss_pred hccchHHHhCCCCcc-eEEEEEee-ccCCcccccCCCccccCcCc---CCc--ccCCHHHHHHHHHHHHHhccceeeecc
Confidence 344666666633222 33345776 8999975 999987742 222 235999999999999999999876631
Q ss_pred -------ccCCCCCC-c-hhHHHHHHHHHHHHhc--CceE-EEe---CCCC------CHHHHHHHHHcCC--CeEecCCC
Q 022946 147 -------AWRDTIGR-K-TNFNQILEYVKDIRDM--GMEV-CCT---LGML------EKHQAIELKKAGL--TAYNHNLD 203 (289)
Q Consensus 147 -------~~~~~~ge-~-~~~~~l~e~i~~ik~~--~~~i-~~~---~g~l------~~e~l~~L~~aG~--~~v~i~le 203 (289)
+..+.+++ | .+-+.+.++.+.++.. ++.+ ++. ++++ +.+.++.+.+.|- |.+.+|+|
T Consensus 240 Q~difsy~~~~~g~e~P~PnPealekL~~Gir~~AP~l~tLHiDNaNP~tIa~yp~eSr~i~K~ivky~TpGnVaAfGlE 319 (560)
T COG1031 240 QADIFSYGADDNGGEVPRPNPEALEKLFRGIRNVAPNLKTLHIDNANPATIARYPEESREIAKVIVKYGTPGNVAAFGLE 319 (560)
T ss_pred ccceeeecccccCCCCCCCCHHHHHHHHHHHHhhCCCCeeeeecCCCchhhhcChHHHHHHHHHHHhhCCCCceeeeecc
Confidence 11111121 1 2335555566666633 3332 222 2221 4455666666653 67889999
Q ss_pred ch-HHHHhccCCCCCHHHHHHHHHHHHHcC-------Cc---eeecEEeec-CCCHHHHHHHHHHHhcCCC---CCCeee
Q 022946 204 TS-REFYSKIITTRSYDERLETLKHVREAG-------IN---VCSGGIIGL-GEAEEDRVGLLHTLATLPT---HPESVP 268 (289)
Q Consensus 204 t~-~~~~~~i~~~~~~~~~~~~i~~~~~~G-------i~---v~~~~i~Gl-get~ed~~~~l~~l~~l~~---~~~~v~ 268 (289)
|+ +.+.++.+-..+.|+++++++.+.+.| ++ ...++++|+ |||.|.+.-..++|+++-+ .+..++
T Consensus 320 saDp~V~r~NnL~~spEEvl~AV~ivn~vG~~rg~nGlP~lLPGINfv~GL~GEtkeT~~ln~efL~~ild~gllvRRIN 399 (560)
T COG1031 320 SADPRVARKNNLNASPEEVLEAVEIVNEVGGGRGYNGLPYLLPGINFVFGLPGETKETYELNYEFLKEILDEGLLVRRIN 399 (560)
T ss_pred ccCHHHHhhccccCCHHHHHHHHHHHHHhcCccCcCCCccccccceeEecCCCccHHHHHhhHHHHHHHHhcCceEEEee
Confidence 99 888888777889999999999998854 32 577899999 9999999988888877421 356788
Q ss_pred eccceecCCCCCCCC
Q 022946 269 INALLAVKGTPLQDQ 283 (289)
Q Consensus 269 i~~~~p~pgTpl~~~ 283 (289)
+...+++|||||+.+
T Consensus 400 IRqV~~fpgT~~~~~ 414 (560)
T COG1031 400 IRQVVVFPGTPMWER 414 (560)
T ss_pred eeeEeecCCCchhhh
Confidence 999999999999975
|
|
| >PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.7e-12 Score=113.97 Aligned_cols=172 Identities=13% Similarity=0.236 Sum_probs=129.2
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc------CCcEEEEecccCCCCCCc-hhHHHHHHHHHHH
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA------GSTRFCMGAAWRDTIGRK-TNFNQILEYVKDI 168 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~------g~~~i~i~~~~~~~~ge~-~~~~~l~e~i~~i 168 (289)
.-||+.+|.||...+. + ..+.++++||++.+...... ....|++.| +||| ..++.+.++++.+
T Consensus 117 QvGC~~~C~FCatg~~---g--~~RnLt~~EIv~QV~~~~~~~~~~~~~~~~vVfmG-----mGEPL~N~d~v~~~l~~l 186 (356)
T PRK14462 117 QVGCKVGCAFCLTAKG---G--FVRNLSAGEIVGQILWIKKDNNIPYEKRVNIVYMG-----MGEPLDNLDNVSKAIKIF 186 (356)
T ss_pred cccCCCCCccCCCCCC---C--CcccCCHHHHHHHHHHHHHhhhccccccCCeEEeC-----CcccccCHHHHHHHHHHh
Confidence 5699999999977531 2 22458999999998755432 245677776 3667 4779999999999
Q ss_pred Hh-cCce-----EE-EeCCCCCHHHHHHHHHcCC-CeEecCCCch-HHHHhccCCC---CCHHHHHHHHHH-HHHcCCce
Q 022946 169 RD-MGME-----VC-CTLGMLEKHQAIELKKAGL-TAYNHNLDTS-REFYSKIITT---RSYDERLETLKH-VREAGINV 235 (289)
Q Consensus 169 k~-~~~~-----i~-~~~g~l~~e~l~~L~~aG~-~~v~i~let~-~~~~~~i~~~---~~~~~~~~~i~~-~~~~Gi~v 235 (289)
++ .|+. +. .|.|.. +.+++|.+..+ ..+.+|+.+. ++.++++.+. ...++++++++. +.+.|-.+
T Consensus 187 ~~~~Gl~~~~r~itVsTsG~~--~~i~~L~~~dl~v~LaiSLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i 264 (356)
T PRK14462 187 SENDGLAISPRRQTISTSGLA--SKIKKLGEMNLGVQLAISLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRV 264 (356)
T ss_pred cCccCCCcCCCceEEECCCCh--HHHHHHHhcCCCeEEEEECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeE
Confidence 85 4653 23 457755 46777887755 4566799999 9999999883 356899998885 55677665
Q ss_pred e--ecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 236 C--SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 236 ~--~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
. ..+|-|+.++.+|+..+.++++.+ +..|.+.+|.|+++.++..
T Consensus 265 ~ieyvLI~GvNDs~e~a~~La~llk~l---~~~VnLIPyn~~~~~~~~~ 310 (356)
T PRK14462 265 MFEYLVIKDVNDDLKSAKKLVKLLNGI---KAKVNLILFNPHEGSKFER 310 (356)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCCCCCCCCCC
Confidence 4 456679999999999999999988 3689999999999887643
|
|
| >COG2516 Biotin synthase-related enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.3e-13 Score=113.89 Aligned_cols=182 Identities=24% Similarity=0.374 Sum_probs=136.0
Q ss_pred cCCCCcCCCCCCCCCCCCCCC-------CCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHH
Q 022946 96 TGGCSEDCSYCPQSSRYDTGV-------KGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDI 168 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~-------~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~i 168 (289)
-.+|..+|.||.+......+. ...+....+++++-..... ...++++++- ...|....++..+++.+
T Consensus 38 ~~~c~~~ca~c~~ar~s~a~p~~~~lsRv~w~~v~l~~~~~~~~~~~-g~~~rici~~-----i~~p~~~~d~~~i~~~~ 111 (339)
T COG2516 38 PGGCIADCAYCPQARSSTANPPKKVLSRVEWPAVALEEVLKRLFYDL-GNFKRICIQQ-----IAYPRALNDLKLILERL 111 (339)
T ss_pred CCceeechhhChhhhhcccCCCcceeeecccccchHHHHHhHhhhhh-ccccccccee-----eccccccchhhhhhhhh
Confidence 489999999998764322220 1122245566655543211 2267788754 22355667778888877
Q ss_pred H-hcCceEEEe----CCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCC----CCCHHHHHHHHHHHHH-cC-Ccee
Q 022946 169 R-DMGMEVCCT----LGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT----TRSYDERLETLKHVRE-AG-INVC 236 (289)
Q Consensus 169 k-~~~~~i~~~----~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~----~~~~~~~~~~i~~~~~-~G-i~v~ 236 (289)
. ..+.++.++ .-.+ .+.+...+++|.+.+.+.+|.+ +++++++++ .+++|+.++.++.+.+ .| -.+.
T Consensus 112 ~~~~~~~itiseci~~~~~-~~~l~e~~klg~d~l~V~~daa~~~~~e~v~~~s~s~~S~e~~~~~l~~~~~~~~k~rv~ 190 (339)
T COG2516 112 HIRLGDPITISECITAVSL-KEELEEYRKLGADYLGVAEDAANEELFEKVRKTSGSPHSWERYWEFLEKVAEAFGKGRVG 190 (339)
T ss_pred hhccCCceehhhhhhcccc-hHHHHHHHhcchhhhhHHHHhcCHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhccCCcc
Confidence 7 566655433 2223 8889999999999999999999 999999943 3689999999999877 56 5799
Q ss_pred ecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCCCCC
Q 022946 237 SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKLKY 287 (289)
Q Consensus 237 ~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~~~~ 287 (289)
.++++|+||++.++.+++..+...+ ..+.++.|.|..||.|++..+++
T Consensus 191 ihliVglGesD~~~ve~~~~v~~~g---~~v~Lfaf~P~~gt~me~r~~~p 238 (339)
T COG2516 191 IHLIVGLGESDKDIVETIKRVRKRG---GIVSLFAFTPLKGTQMENRKPPP 238 (339)
T ss_pred eeEEeccCCchHHHHHHHHHHHhcC---ceEEEEEecccccccccCCCCCc
Confidence 9999999999999999999999984 57889999999999999988765
|
|
| >PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.4e-12 Score=111.82 Aligned_cols=178 Identities=16% Similarity=0.293 Sum_probs=129.3
Q ss_pred eeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-cCCcEEEEecccCCCCCCc-hhHHHHHHHHHHH
Q 022946 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRK-TNFNQILEYVKDI 168 (289)
Q Consensus 91 ~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~g~~~i~i~~~~~~~~ge~-~~~~~l~e~i~~i 168 (289)
.|+. ..||+.+|.||..... +. .+.++.+||++.+..+.+ ..++.|+|.| .||| .+++.+++.++.+
T Consensus 99 CvSs-QvGC~~~C~FC~tg~~---g~--~RnLs~~EI~~Qv~~~~~~~~i~nIVfmG-----mGEPl~N~d~vl~ai~~l 167 (344)
T PRK14464 99 CVST-QVGCAVGCVFCMTGRS---GL--LRQLGSAEIVAQVVLARRRRAVKKVVFMG-----MGEPAHNLDNVLEAIDLL 167 (344)
T ss_pred EEEc-cCCcCCCCCcCcCCCC---CC--CCCCCHHHHHHHHHHHHhcCCCCEEEEec-----cCcccCCHHHHHHHHHHh
Confidence 3555 8899999999986531 22 234799999999887765 4589999988 3566 4668888888877
Q ss_pred Hhc---Cc-eE-EEeCCCCCHHHHHHHHHcCCC-eEecCCCch-HHHHhccCCC---CCHHHHHHHHHHH-HHcCCceee
Q 022946 169 RDM---GM-EV-CCTLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIITT---RSYDERLETLKHV-REAGINVCS 237 (289)
Q Consensus 169 k~~---~~-~i-~~~~g~l~~e~l~~L~~aG~~-~v~i~let~-~~~~~~i~~~---~~~~~~~~~i~~~-~~~Gi~v~~ 237 (289)
.+. +. .+ ..+.|. .+.+.+|.+.++. .+.+|+.+. ++.++++.|. .+.++++++++.. ++.|-.+..
T Consensus 168 ~~~~~i~~r~itiST~G~--~~~i~rL~~~~v~~~LaiSLhA~~~e~R~~imP~~~~~~l~el~~a~~~~~~~~grri~~ 245 (344)
T PRK14464 168 GTEGGIGHKNLVFSTVGD--PRVFERLPQQRVKPALALSLHTTRAELRARLLPRAPRIAPEELVELGEAYARATGYPIQY 245 (344)
T ss_pred hchhcCCCceEEEecccC--chHHHHHHHhcCChHHHHHhcCCChhHhheeCCccCCCCHHHHHHHHHHHHHHHCCEEEE
Confidence 532 22 12 344563 3445777765442 456799999 9999999883 3789999988885 446766544
Q ss_pred --cEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCC
Q 022946 238 --GGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284 (289)
Q Consensus 238 --~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~ 284 (289)
.++-|+.++.++..++.++++.+ ...|++.+|.|.+|+++...+
T Consensus 246 EyvLl~GVNDs~e~a~~L~~~l~~~---~~~vNLIPyN~v~g~~~~rp~ 291 (344)
T PRK14464 246 QWTLLEGVNDSDEEMDGIVRLLKGK---YAVMNLIPYNSVDGDAYRRPS 291 (344)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhcc---ccccceecCCccCCCCccCCC
Confidence 44448899999999999999877 467889999999998876543
|
|
| >TIGR00238 KamA family protein | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.2e-12 Score=112.67 Aligned_cols=167 Identities=15% Similarity=0.142 Sum_probs=118.6
Q ss_pred eeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-cCCcEEEEecccCCCCCCchhH--HHHHHHHHH
Q 022946 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTNF--NQILEYVKD 167 (289)
Q Consensus 91 ~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~g~~~i~i~~~~~~~~ge~~~~--~~l~e~i~~ 167 (289)
++.+ |.+||.+|+||...... .. . ...+.+++.+.++.+.. .|+.+|.|+||+ |... ..+.++++.
T Consensus 116 ll~~-T~gCn~~C~yC~~~~~~-~~--~-~~~~~~~~~~~i~~i~~~~~i~eV~lsGGD------PLl~~d~~L~~ll~~ 184 (331)
T TIGR00238 116 LFLV-KGGCAVNCRYCFRRHFP-YK--E-NPGNKKKWQKALDYIAEHPEIIEILISGGD------PLMAKDHELEWLLKR 184 (331)
T ss_pred EEEe-CCCCCCCCcCCCCCCcC-CC--C-CCccHHHHHHHHHHHHhCCCcCEEEEECCc------cccCCHHHHHHHHHH
Confidence 3455 99999999999874311 11 1 11136777777777765 478999998843 3222 236666666
Q ss_pred HHhc----CceEEEe-CC----CCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCcee-
Q 022946 168 IRDM----GMEVCCT-LG----MLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVC- 236 (289)
Q Consensus 168 ik~~----~~~i~~~-~g----~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~- 236 (289)
+++. ++.+.+. ++ .++++.++.|+++|+..+.++.... +++ .++..++++.++++|+.+.
T Consensus 185 L~~i~~~~~IRi~tr~~~~~P~rit~el~~~L~~~~~~~~~vsh~nh~~Ei---------~~~~~~ai~~L~~aGi~v~~ 255 (331)
T TIGR00238 185 LEEIPHLVRLRIGTRLPVVIPQRITDELCELLASFELQLMLVTHINHCNEI---------TEEFAEAMKKLRTVNVTLLN 255 (331)
T ss_pred HHhcCCccEEEeecCCCccCchhcCHHHHHHHHhcCCcEEEEccCCChHhC---------CHHHHHHHHHHHHcCCEEEe
Confidence 6543 3444332 23 2699999999999999888886665 443 2678899999999999754
Q ss_pred -ecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCC
Q 022946 237 -SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP 279 (289)
Q Consensus 237 -~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTp 279 (289)
+.++-|..++.+++.++.+.+.++ ++....++.+.|.+|+.
T Consensus 256 qtvLl~gvnD~~~~l~~L~~~l~~~--gV~pyyl~~~~~~~g~~ 297 (331)
T TIGR00238 256 QSVLLRGVNDRAQILAKLSIALFKV--GIIPYYLHYLDKVQGAK 297 (331)
T ss_pred ecceECCcCCCHHHHHHHHHHHhhc--CeecCeecCcCCCCCcc
Confidence 456668888899999999999988 56677788888988874
|
Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein. |
| >PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-11 Score=108.37 Aligned_cols=174 Identities=18% Similarity=0.343 Sum_probs=126.2
Q ss_pred eccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-c--CCcEEEEecccCCCCCCc-hhHHHHHHHHHH
Q 022946 92 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-A--GSTRFCMGAAWRDTIGRK-TNFNQILEYVKD 167 (289)
Q Consensus 92 i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~--g~~~i~i~~~~~~~~ge~-~~~~~l~e~i~~ 167 (289)
|+. ..||+.+|.||.... .+ ..+.++++||++.+..... + .+..+++.| +||| .+++.+.++++.
T Consensus 105 vSs-qvGC~~~C~FC~tg~---~G--~~rnlt~~EI~~qv~~~~~~~~~~~~gvV~mg-----gGEPLln~d~v~~~l~~ 173 (342)
T PRK14454 105 VST-QVGCRMGCKFCASTI---GG--MVRNLTAGEMLDQILAAQNDIGERISNIVLMG-----SGEPLDNYENVMKFLKI 173 (342)
T ss_pred EEc-CCCCCCcCCcCCCCC---CC--CcccCCHHHHHHHHHHHHHHhcCCCCCEEEEC-----CchhhcCHHHHHHHHHH
Confidence 555 789999999998653 12 2234899999999876654 2 345655544 2667 466889999999
Q ss_pred HHh-cCc-----eEE-EeCCCCCHHHHHHHHHcCC-CeEecCCCch-HHHHhccCCC---CCHHHHHHHHHH-HHHcCCc
Q 022946 168 IRD-MGM-----EVC-CTLGMLEKHQAIELKKAGL-TAYNHNLDTS-REFYSKIITT---RSYDERLETLKH-VREAGIN 234 (289)
Q Consensus 168 ik~-~~~-----~i~-~~~g~l~~e~l~~L~~aG~-~~v~i~let~-~~~~~~i~~~---~~~~~~~~~i~~-~~~~Gi~ 234 (289)
+++ .|+ ++. .|.|..+ .+..|.+.++ ..+.+++.+. ++.++++.+. ...++.+++++. +.+.|.+
T Consensus 174 l~~~~gi~~~~r~itvsTsG~~p--~i~~l~~~~~~~~laisLka~d~e~r~~l~pv~~~~~L~~l~~~~~~~~~~~~~r 251 (342)
T PRK14454 174 VNSPYGLNIGQRHITLSTCGIVP--KIYELADENLQITLAISLHAPNDELRKKMMPIANKYSIEELIEACKYYINKTNRR 251 (342)
T ss_pred HhcccccCcCCCceEEECcCChh--HHHHHHhhcccceEEEecCCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHhCCE
Confidence 985 566 443 4577653 2566766542 3478999999 9999999883 356777777765 5567776
Q ss_pred ee--ecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCC
Q 022946 235 VC--SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ 281 (289)
Q Consensus 235 v~--~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~ 281 (289)
+. .-+|-|+.++.+|+.++.++++.+ ...|.+.+|.|.++..+.
T Consensus 252 v~iey~LI~gvNDs~eda~~La~llk~l---~~~VnLiPyn~~~~~~~~ 297 (342)
T PRK14454 252 ITFEYALVKGVNDSKEDAKELGKLLKGM---LCHVNLIPVNEVKENGFK 297 (342)
T ss_pred EEEEEEeECCCCCCHHHHHHHHHHHhcC---CceEEEEecCCCCCCCCC
Confidence 54 456668899999999999999987 468888899888877653
|
|
| >PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.1e-11 Score=107.65 Aligned_cols=164 Identities=14% Similarity=0.243 Sum_probs=121.0
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH---cCCcEEEEecccCCCCCCc-hhHHHHHHHHHHHHh-
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE---AGSTRFCMGAAWRDTIGRK-TNFNQILEYVKDIRD- 170 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~---~g~~~i~i~~~~~~~~ge~-~~~~~l~e~i~~ik~- 170 (289)
.-||+.+|.||+..+ .+.. +.++.+||++.+-.+.. ..+..|+|.| .||| .+++.+++.++.+++
T Consensus 112 QvGC~m~C~FC~tg~---~g~~--rnlta~EI~~qv~~~~~~~~~~~~niVFmG-----mGEPL~N~d~V~~~~~~l~~~ 181 (342)
T PRK14465 112 QIGCTLNCKFCATAK---LEFQ--GNLKAHEIVDQVLQVEKIVGDRATNVVFMG-----MGEPMHNYFNVIRAASILHDP 181 (342)
T ss_pred cCCCCCCCCCCcCCC---CCcc--CCCCHHHHHHHHHHHHHhcCCCceEEEEEc-----CCcchhhHHHHHHHHHHHhCh
Confidence 669999999998764 2222 34689999988866654 3478888877 4778 466899999988873
Q ss_pred c--Cc---eE-EEeCCCCCHHHHHHHHH-cCCCeEecCCCch-HHHHhccCC---CCCHHHHHHHHHHH-HHcCCcee--
Q 022946 171 M--GM---EV-CCTLGMLEKHQAIELKK-AGLTAYNHNLDTS-REFYSKIIT---TRSYDERLETLKHV-REAGINVC-- 236 (289)
Q Consensus 171 ~--~~---~i-~~~~g~l~~e~l~~L~~-aG~~~v~i~let~-~~~~~~i~~---~~~~~~~~~~i~~~-~~~Gi~v~-- 236 (289)
. ++ .+ .+|+|.+ +. +..|.+ ..--.+.+|+++. ++.+.++.| ..+.++++++++.. ++.|-.+.
T Consensus 182 ~~~~~~~r~itvST~G~~-~~-i~~l~~~~~~~~LaiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ie 259 (342)
T PRK14465 182 DAFNLGAKRITISTSGVV-NG-IRRFIENKEPYNFAISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFE 259 (342)
T ss_pred hhhcCCCCeEEEeCCCch-HH-HHHHHhhccCceEEEEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEE
Confidence 2 22 33 3568865 34 444443 3334789999999 999999976 45789999999965 46677755
Q ss_pred ecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeecccee
Q 022946 237 SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 274 (289)
Q Consensus 237 ~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p 274 (289)
..+|-|+.++.+|+.++.++++.++ ..|.+.+|.|
T Consensus 260 yvLI~GvNDs~eda~~L~~ll~~l~---~kVnLIPyN~ 294 (342)
T PRK14465 260 YVMIPGVNMGRENANKLVKIARSLD---CKINVIPLNT 294 (342)
T ss_pred EEEECCccCCHHHHHHHHHHHhhCC---CcEEEEccCC
Confidence 4556688999999999999999983 5677777777
|
|
| >PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.3e-11 Score=108.71 Aligned_cols=171 Identities=16% Similarity=0.280 Sum_probs=123.5
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc----------CCcEEEEecccCCCCCCch-hHHHHHHH
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA----------GSTRFCMGAAWRDTIGRKT-NFNQILEY 164 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~----------g~~~i~i~~~~~~~~ge~~-~~~~l~e~ 164 (289)
.-||+.+|.||..... +. .+.++.+||++.+..+... +++.|++.| .|||+ +++.+.++
T Consensus 110 QvGC~~~C~FC~t~~~---g~--~rnLt~~EIv~Qv~~~~~~~~~~~~~gg~~~~nvV~mG-----mGEPL~N~d~v~~a 179 (372)
T PRK11194 110 QVGCALECKFCSTAQQ---GF--NRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMG-----MGEPLLNLNNVVPA 179 (372)
T ss_pred CCCCCCcCCCCCCCCC---CC--CCcCCHHHHHHHHHHHHHHhhhccccCCcccceEEEec-----CCccccCHHHHHHH
Confidence 4799999999987631 22 2448999999988655431 277787777 36774 57888899
Q ss_pred HHHHH-hcC--c---eEE-EeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCC---CCHHHHHHHHHH-HHHcC
Q 022946 165 VKDIR-DMG--M---EVC-CTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITT---RSYDERLETLKH-VREAG 232 (289)
Q Consensus 165 i~~ik-~~~--~---~i~-~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~---~~~~~~~~~i~~-~~~~G 232 (289)
++.++ +.| + .+. .|.|.. ..+++|.+..--.+.+++.+. ++.++++.|. ...++.+++++. +.+.|
T Consensus 180 l~~l~~~~g~~i~~r~itVsTsG~~--~~i~~l~~~~d~~LaiSLha~d~e~R~~lmPin~~~~l~~ll~a~~~y~~~~~ 257 (372)
T PRK11194 180 MEIMLDDFGFGLSKRRVTLSTSGVV--PALDKLGDMIDVALAISLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEKSN 257 (372)
T ss_pred HHHHhhhhccCcCCCeEEEECCCCc--hHHHHHHhccCeEEEeeccCCCHHHHHHhcCCcccccHHHHHHHHHHHHHhcc
Confidence 98887 444 3 443 457754 345666665322566789998 9999999983 356788877666 44453
Q ss_pred -----CceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCC
Q 022946 233 -----INVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ 281 (289)
Q Consensus 233 -----i~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~ 281 (289)
+.+..-+|-|+.++.+++.++.++++.+ . ..|.+.+|.|+++.++.
T Consensus 258 ~~~rrI~irypLIpGvNDs~e~a~~La~ll~~l--~-~~VnLIPYN~~~~~~~~ 308 (372)
T PRK11194 258 ANQGRVTVEYVMLDHVNDGTEHAHQLAELLKDT--P-CKINLIPWNPFPGAPYG 308 (372)
T ss_pred cCCCeEEEEEEeECCCCCCHHHHHHHHHHHhcC--C-ceEEEecCCCCCCCCCC
Confidence 3466677889999999999999999988 2 58999999999987763
|
|
| >TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-11 Score=110.89 Aligned_cols=173 Identities=13% Similarity=0.168 Sum_probs=121.1
Q ss_pred eeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc-CCcEEEEecccCCCCCCchhHHHHHHHHHHHH
Q 022946 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169 (289)
Q Consensus 91 ~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~-g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik 169 (289)
++.+ |++|+..|+||....... .....++.+++.+.++.+.+. +++.|.|+||+... -.+ +.+..+++.++
T Consensus 111 Ll~v-T~~C~~~CryC~R~~~~g---~~~~~ls~eei~~~i~yI~~~p~I~~VlLSGGDPLl-l~d---~~L~~iL~~L~ 182 (417)
T TIGR03820 111 LFLV-SNTCAMYCRHCTRKRKVG---DRDSIPSKEQILEGIEYIRNTPQIRDVLLSGGDPLL-LSD---DYLDWILTELR 182 (417)
T ss_pred EEEE-cCCcCCCCcCCCCcccCC---cccccCCHHHHHHHHHHHHhcCCCCEEEEeCCcccc-CCh---HHHHHHHHHHh
Confidence 3444 999999999998753211 122346889999999888874 89999998854222 111 12333345554
Q ss_pred hc-Cc---eEEEe-----CCCCCHHHHHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCcee--ec
Q 022946 170 DM-GM---EVCCT-----LGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVC--SG 238 (289)
Q Consensus 170 ~~-~~---~i~~~-----~g~l~~e~l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~--~~ 238 (289)
+. ++ .+.+. ...++++.++.|++.+..+|.+++++.+|+ .++.+++++.++++|+.+. +.
T Consensus 183 ~IphV~~IRI~TR~pvv~P~RIT~ell~~Lk~~~~~~v~~h~nhp~Ei---------t~~a~~Al~~L~~aGI~l~nQsV 253 (417)
T TIGR03820 183 AIPHVEVIRIGTRVPVVLPQRITDELVAILKKHHPVWLNTHFNHPREI---------TASSKKALAKLADAGIPLGNQSV 253 (417)
T ss_pred hcCCCceEEEeeccccccccccCHHHHHHHHhcCCeEEEEeCCChHhC---------hHHHHHHHHHHHHcCCEEEeece
Confidence 33 33 34333 334789999999999988888888887543 5899999999999999854 45
Q ss_pred EEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 239 GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 239 ~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
++-|+.++.+-+.++.+.|.+++ +.--.++..-+.+|+.-+.
T Consensus 254 LLkGVND~~~~l~~L~~~L~~~g--V~PYYl~~~d~v~G~~hFr 295 (417)
T TIGR03820 254 LLAGVNDCPRIMKKLVHKLVANR--VRPYYLYQCDLSEGLSHFR 295 (417)
T ss_pred EECCcCCCHHHHHHHHHHHHHCC--CeeceeeeccCCCCccccc
Confidence 66688999999999999999884 4444455556677765443
|
This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region. |
| >PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.1e-11 Score=106.65 Aligned_cols=176 Identities=15% Similarity=0.267 Sum_probs=129.6
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-----------------cCCcEEEEecccCCCCCCc-hh
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-----------------AGSTRFCMGAAWRDTIGRK-TN 157 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-----------------~g~~~i~i~~~~~~~~ge~-~~ 157 (289)
.-||+.+|.||+..+ .+. .+.++..||++.+..+.+ ..++.|+|.| .||| .+
T Consensus 114 QvGC~mgC~FCaTG~---~G~--~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMG-----MGEPL~N 183 (371)
T PRK14461 114 QAGCGMGCVFCATGT---LGL--LRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMG-----MGEPFAN 183 (371)
T ss_pred cCCccCCCCcccCCC---CCc--ccCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEc-----cCCchhh
Confidence 559999999998764 222 345899999998866542 1267888877 4778 57
Q ss_pred HHHHHHHHHHHH-hc--Cc---eE-EEeCCCCCHHHHHHHHHcCC-CeEecCCCch-HHHHhccCC---CCCHHHHHHHH
Q 022946 158 FNQILEYVKDIR-DM--GM---EV-CCTLGMLEKHQAIELKKAGL-TAYNHNLDTS-REFYSKIIT---TRSYDERLETL 225 (289)
Q Consensus 158 ~~~l~e~i~~ik-~~--~~---~i-~~~~g~l~~e~l~~L~~aG~-~~v~i~let~-~~~~~~i~~---~~~~~~~~~~i 225 (289)
++.++++++.+. .. ++ .+ ..|.|. ...+++|.+.++ -.+.+|+-+. ++.++++.| ....+++++++
T Consensus 184 ydnV~~ai~il~d~~g~~is~R~ITVST~Gi--vp~I~~la~~~~~v~LAiSLHA~~~e~R~~lmPin~~ypl~eLl~a~ 261 (371)
T PRK14461 184 YDRWWQAVERLHDPQGFNLGARSMTVSTVGL--VKGIRRLANERLPINLAISLHAPDDALRSELMPVNRRYPIADLMAAT 261 (371)
T ss_pred HHHHHHHHHHhcCccccCcCCCceEEEeecc--hhHHHHHHhcccCceEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHH
Confidence 799999998886 22 33 13 345674 344667776554 3677899999 999999998 45789999999
Q ss_pred HHHH-HcCCcee--ecEEeecCCCHHHHHHHHHHHhcCCCC---CCeeeeccceecCCCCCCCC
Q 022946 226 KHVR-EAGINVC--SGGIIGLGEAEEDRVGLLHTLATLPTH---PESVPINALLAVKGTPLQDQ 283 (289)
Q Consensus 226 ~~~~-~~Gi~v~--~~~i~Glget~ed~~~~l~~l~~l~~~---~~~v~i~~~~p~pgTpl~~~ 283 (289)
+... +.|-.+. ..+|=|+.++.+|..++.++++.++.. .-.|++.+|.|.+|+++...
T Consensus 262 ~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~Np~~~~~~~~p 325 (371)
T PRK14461 262 RDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNLIPWNPVPGTPLGRS 325 (371)
T ss_pred HHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEEecCCCCCCCCCCCC
Confidence 9854 4565544 456668899999999999999987210 35899999999999987653
|
|
| >PRK14453 chloramphenicol/florfenicol resistance protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3e-11 Score=107.37 Aligned_cols=175 Identities=17% Similarity=0.285 Sum_probs=123.0
Q ss_pred eccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcC--CcEEEEecccCCCCCCchhHHHHHHHHHHHH
Q 022946 92 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAG--STRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169 (289)
Q Consensus 92 i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g--~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik 169 (289)
|+. .-||+++|.||..... ...+.++.+||++.+..+...| ++.|+|.| .|||+....++++++.++
T Consensus 104 vss-qvGC~~~C~FC~tg~~-----g~~rnLt~~EIv~qv~~~~~~~~~i~~IvfmG-----mGEPLln~~v~~~i~~l~ 172 (347)
T PRK14453 104 ISS-QCGCGFGCRFCATGSI-----GLKRNLTADEITDQLLYFYLNGHRLDSISFMG-----MGEALANPELFDALKILT 172 (347)
T ss_pred Eec-CCCcCCCCCCCCCCCC-----CCcccCCHHHHHHHHHHHHhcCCCcceEEEee-----cCCccCCHHHHHHHHHHh
Confidence 444 6799999999987631 2234589999999998776554 78898887 367765567888888776
Q ss_pred h---cCce---E-EEeCCCCCHHHHHHHHHc-CCCeEecCCCch-HHHHhccCCC---CCHHHHHHHHHHH-HHcCCc--
Q 022946 170 D---MGME---V-CCTLGMLEKHQAIELKKA-GLTAYNHNLDTS-REFYSKIITT---RSYDERLETLKHV-REAGIN-- 234 (289)
Q Consensus 170 ~---~~~~---i-~~~~g~l~~e~l~~L~~a-G~~~v~i~let~-~~~~~~i~~~---~~~~~~~~~i~~~-~~~Gi~-- 234 (289)
+ .++. + ..|+|..+ .++.|.+. .-..+.+++.+. ++.++++.+. ...++++++++.. .+.|.+
T Consensus 173 ~~~~~~~~~r~itVsT~G~~~--~i~~l~~~~~~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~~~V~ 250 (347)
T PRK14453 173 DPNLFGLSQRRITISTIGIIP--GIQRLTQEFPQVNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTGRKVY 250 (347)
T ss_pred cccccCCCCCcEEEECCCCch--hHHHHHhhccCcCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEE
Confidence 3 2333 3 45678664 22333332 112345599999 8998888873 3577777777764 446765
Q ss_pred eeecEEeecCCCHHHHHHHHHHHhcCCC--CCCeeeeccceecCCCC
Q 022946 235 VCSGGIIGLGEAEEDRVGLLHTLATLPT--HPESVPINALLAVKGTP 279 (289)
Q Consensus 235 v~~~~i~Glget~ed~~~~l~~l~~l~~--~~~~v~i~~~~p~pgTp 279 (289)
+..-+|-|+.++.+++.+++++++.++. .+..|.+.+|.|.++.+
T Consensus 251 iry~LI~GvNDs~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~~~~ 297 (347)
T PRK14453 251 IAYIMLEGVNDSKEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTDKTP 297 (347)
T ss_pred EEEEeECCCCCCHHHHHHHHHHHhhccccCCcceEEEecCCCCCCCC
Confidence 4556777999999999999999998721 25689999999987754
|
|
| >TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-11 Score=109.15 Aligned_cols=172 Identities=16% Similarity=0.232 Sum_probs=115.1
Q ss_pred eccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-cCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh
Q 022946 92 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD 170 (289)
Q Consensus 92 i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~ 170 (289)
+.+ |.+|+.+|+||...... ..+ ..++.+++.+.+..+.+ .+++.|.|+||+ +....+..+.++++.++.+..
T Consensus 100 ~~~-t~~Cn~~Cr~C~~~~~~---~~~-~~~~~~~~~~~i~~i~~~~~i~~VvltGGE-PL~~~d~~L~~ll~~l~~i~~ 173 (321)
T TIGR03821 100 LIV-TGGCAINCRYCFRRHFP---YQE-NQPNKAQWKEALEYIAQHPEINEVILSGGD-PLMAKDHRLDWLLNLLEQIPH 173 (321)
T ss_pred EEe-CCCcCCcCcCCCCCCcC---CCC-CCCCHHHHHHHHHHHHhcCCCCEEEEeCcc-cccCCchHHHHHHHHHHhCCC
Confidence 334 99999999999865321 111 12466777776776664 489999998843 221111123334433333321
Q ss_pred c-CceEEE-----eCCCCCHHHHHHHHHcCCCeEe-cCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceee--cEEe
Q 022946 171 M-GMEVCC-----TLGMLEKHQAIELKKAGLTAYN-HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCS--GGII 241 (289)
Q Consensus 171 ~-~~~i~~-----~~g~l~~e~l~~L~~aG~~~v~-i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~--~~i~ 241 (289)
. .+.+.+ ....++++.++.|+++|+..+. +++++.+|+. +...++++.++++|+.+.. .++-
T Consensus 174 ~~~iri~tr~~~~~p~rit~el~~~L~~~~~~~~~~~h~dh~~Ei~---------d~~~~ai~~L~~~Gi~v~~qtvllk 244 (321)
T TIGR03821 174 LKRLRIHTRLPVVIPDRITSGLCDLLANSRLQTVLVVHINHANEID---------AEVADALAKLRNAGITLLNQSVLLR 244 (321)
T ss_pred CcEEEEecCcceeeHHHhhHHHHHHHHhcCCcEEEEeeCCChHhCc---------HHHHHHHHHHHHcCCEEEecceeeC
Confidence 1 122221 1125789999999999988775 5898875543 4578899999999997544 4445
Q ss_pred ecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCC
Q 022946 242 GLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 280 (289)
Q Consensus 242 Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl 280 (289)
|+.++.+++.++.+.+.++ ++....++.+.|..|+.-
T Consensus 245 giNDn~~~l~~L~~~l~~~--gv~pyyl~~~~p~gg~~~ 281 (321)
T TIGR03821 245 GVNDNADTLAALSERLFDA--GVLPYYLHLLDKVQGAAH 281 (321)
T ss_pred CCCCCHHHHHHHHHHHHHc--CCeeCcccccCCCCCccc
Confidence 7789999999999999999 577778888899888664
|
Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc. |
| >TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.6e-11 Score=107.68 Aligned_cols=151 Identities=15% Similarity=0.180 Sum_probs=114.9
Q ss_pred CCHHHHHHHHHHHHH---cCCcEEEEecccCCCCCCchhHHHH-HHHHHHHHhcCceE-EEeCCCCCHHHHHHHHHcCCC
Q 022946 122 MTKDAVMQAAQKAKE---AGSTRFCMGAAWRDTIGRKTNFNQI-LEYVKDIRDMGMEV-CCTLGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 122 ~~~eei~~~~~~~~~---~g~~~i~i~~~~~~~~ge~~~~~~l-~e~i~~ik~~~~~i-~~~~g~l~~e~l~~L~~aG~~ 196 (289)
++.+++.+.+..... .+...|+|.| |||+...++ .++++.+++.|+.+ ..|||.+..+.++++... ++
T Consensus 106 ~t~eel~~~i~~~~~~~~~~~~~V~~sG------GEPll~~~~l~~l~~~~k~~g~~~~i~TnG~~~~~~~~~ll~~-~d 178 (295)
T TIGR02494 106 MTVEEVMRVVLRDSIFYRNSGGGVTLSG------GEPLLQPEFALALLQACHERGIHTAVETSGFTPWETIEKVLPY-VD 178 (295)
T ss_pred CcHHHHHHHHHHHHHhcccCCCcEEeeC------cchhchHHHHHHHHHHHHHcCCcEeeeCCCCCCHHHHHHHHhh-CC
Confidence 578888888765432 2334677776 677666665 68999998877764 467898888888887764 78
Q ss_pred eEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCceeec--EEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccce
Q 022946 197 AYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSG--GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALL 273 (289)
Q Consensus 197 ~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~--~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~ 273 (289)
.+.+++++. ++.|+++.+ .+++.+++.++.+.+.|+.+... ++.|+.++.+++.++++++.+++..+..+.+.+|.
T Consensus 179 ~~~isl~~~~~~~~~~~~g-~~~~~vl~~i~~l~~~~~~~~i~~~~v~~~n~~~~ei~~l~~~~~~~~~~v~~v~l~~~~ 257 (295)
T TIGR02494 179 LFLFDIKHLDDERHKEVTG-VDNEPILENLEALAAAGKNVVIRIPVIPGFNDSEENIEAIAAFLRKLEPGVDEIDLLPYH 257 (295)
T ss_pred EEEEeeccCChHHHHHHhC-CChHHHHHHHHHHHhCCCcEEEEeceeCCcCCCHHHHHHHHHHHHHhccCCceEEecCCC
Confidence 899999999 999998866 47899999999999999875544 45577788899999999999983115688888888
Q ss_pred ecCCCCC
Q 022946 274 AVKGTPL 280 (289)
Q Consensus 274 p~pgTpl 280 (289)
|.+..++
T Consensus 258 ~~g~~~~ 264 (295)
T TIGR02494 258 RLGENKY 264 (295)
T ss_pred chhHHHH
Confidence 8765443
|
This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0 |
| >KOG4355 consensus Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5e-12 Score=109.45 Aligned_cols=191 Identities=18% Similarity=0.241 Sum_probs=130.8
Q ss_pred EeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCc--hhHHHHHH-HHH
Q 022946 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK--TNFNQILE-YVK 166 (289)
Q Consensus 90 ~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~--~~~~~l~e-~i~ 166 (289)
.+|.+ ..||-..|.||-.. +. .+.-. ..+.+++++.++...+.|+.+|++..-+...+|.+ ...+.++. +++
T Consensus 189 eIi~i-ntgclgaCtyckTk-ha-rg~l~--sy~~dslvervrt~f~egv~eIwltsedTgaygrdig~slp~ll~klv~ 263 (547)
T KOG4355|consen 189 EIISI-NTGCLGACTYCKTK-HA-RGLLA--SYPKDSLVERVRTSFEEGVCEIWLTSEDTGAYGRDIGKSLPKLLWKLVE 263 (547)
T ss_pred EEEEe-cccccccccccccc-cc-ccccc--cCCHHHHHHHHHHHHhcCcEEEEecccccchhhhhhhhhhHHHHHHHHH
Confidence 35666 77999999999763 11 12122 24899999999999999999999976444334432 12222322 223
Q ss_pred HHHh-cCceEEEeCCCCCHHHHHHHHHc----CCCe-EecCCCch-HHHHhccCCCCCHHHHHHHHHHHHH--cCCceee
Q 022946 167 DIRD-MGMEVCCTLGMLEKHQAIELKKA----GLTA-YNHNLDTS-REFYSKIITTRSYDERLETLKHVRE--AGINVCS 237 (289)
Q Consensus 167 ~ik~-~~~~i~~~~g~l~~e~l~~L~~a----G~~~-v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~--~Gi~v~~ 237 (289)
.+.+ .+..+-++|-..--+.+++++.. .+-. +.+.+++. +.++-.+.+.....+.......+.+ .|+.+.+
T Consensus 264 ~iPe~cmlr~gmTnpP~ilehl~e~a~vlrhp~vYsflhvpvqsgsdsvl~emkreyc~~dfk~Vvd~LterVPgi~IAT 343 (547)
T KOG4355|consen 264 VIPESCMLRAGMTNPPYILEHLEEAAFVLRHPRVYSFLHVPVQSGSDSVLTEMKREYCNFDFKIVVDFLTERVPGITIAT 343 (547)
T ss_pred hcchhhhhhhcCCCCchHHHHHHHHHHHhcCCeEEEEEecccccCchhHHHHHHHHHhhhhHHHHHHHHHhhCCCcEEee
Confidence 3331 22333333332222223322221 2222 34578998 9999999887766666677777777 6999999
Q ss_pred cEEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCCCCC
Q 022946 238 GGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKLKY 287 (289)
Q Consensus 238 ~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~~~~ 287 (289)
++|.|+ +||++|+.++++.+++. +..++-++.|.|.||||.++..+++
T Consensus 344 DiIcgFPtETdeDFeeTmeLv~kY--KFPslfInQfyPRpGTPAAkmkki~ 392 (547)
T KOG4355|consen 344 DIICGFPTETDEDFEETMELVRKY--KFPSLFINQFYPRPGTPAAKMKKIP 392 (547)
T ss_pred eeeecCCCCchHHHHHHHHHHHHc--cCchhhhhhcCCCCCChHHhhhccc
Confidence 999999 99999999999999998 6788999999999999998877654
|
|
| >COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.7e-12 Score=104.48 Aligned_cols=183 Identities=15% Similarity=0.198 Sum_probs=131.5
Q ss_pred ccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-cCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcC
Q 022946 95 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMG 172 (289)
Q Consensus 95 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~ 172 (289)
+||.|.++|.||-.....+ ..+.+ ++++||+..--.+.+ .-++.+++.+|..- ..+...+++++..+.++ +.+
T Consensus 60 lTN~CiyDC~YCINr~s~~--~pra~-ftp~Eiv~ltlnfYrRnYIeGLFLSSGvi~--~~DyTmE~mi~var~LRle~~ 134 (404)
T COG4277 60 LTNFCIYDCAYCINRSSND--TPRAR-FTPEEIVDLTLNFYRRNYIEGLFLSSGVIK--NPDYTMEEMIEVARILRLEHK 134 (404)
T ss_pred HhhhHHHhhHHHhccccCC--Ccccc-cCHHHHHHHHHHHHHHhhhhhheecccccc--CcchHHHHHHHHHHHHhhccc
Confidence 4999999999998754332 23334 799999988766655 44555666554321 22456788888888777 443
Q ss_pred ceEEEe----CCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHc---------------C
Q 022946 173 MEVCCT----LGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA---------------G 232 (289)
Q Consensus 173 ~~i~~~----~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~---------------G 232 (289)
+.-.++ +| -+++.+++.-.. +|+|++++|.. ++-++.+.+.+++.++++.+.+++.. -
T Consensus 135 f~GYIHlK~IPg-as~~li~eagly-adRvSiNIElp~~~~lk~lap~K~p~dI~r~Mg~ir~~i~e~~e~~~r~r~tp~ 212 (404)
T COG4277 135 FRGYIHLKIIPG-ASPDLIKEAGLY-ADRVSINIELPTDDGLKLLAPEKDPTDILRSMGWIRLKILENAEDKRRKRHTPE 212 (404)
T ss_pred cCcEEEEEecCC-CCHHHHHHHhhh-hheeEEeEecCCcchhhhhCCCCChHHHHHHHHHHHHHHhhcccchhhhccCcc
Confidence 332222 34 345555555444 69999999999 99999999999989998888887651 1
Q ss_pred C-c--eeecEEeec-CCCHHHHHHHHHHHhc-CCCCCCeeeeccceecCCCCCCCCCCC
Q 022946 233 I-N--VCSGGIIGL-GEAEEDRVGLLHTLAT-LPTHPESVPINALLAVKGTPLQDQKLK 286 (289)
Q Consensus 233 i-~--v~~~~i~Gl-get~ed~~~~l~~l~~-l~~~~~~v~i~~~~p~pgTpl~~~~~~ 286 (289)
+ + -.+.+|+|- +||++++...-++|.. . ....|.+..|.|.|+||+....++
T Consensus 213 fapaGQSTQmivGA~~~tD~~Ilsrs~~ly~~y--~lkRVyySaf~Pv~~s~~lp~~~p 269 (404)
T COG4277 213 FAPAGQSTQMIVGADGETDEDILSRSENLYGRY--SLKRVYYSAFSPVPSSPLLPDDKP 269 (404)
T ss_pred ccCCCCceEEEEecCCCchHHHHHHHHHHhhcc--ceeEEEeecccccCCCCCCcccCC
Confidence 1 1 346799999 9999999999999864 4 467899999999999998764443
|
|
| >KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.7e-11 Score=106.97 Aligned_cols=186 Identities=17% Similarity=0.257 Sum_probs=138.7
Q ss_pred EeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC---------------
Q 022946 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR--------------- 154 (289)
Q Consensus 90 ~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge--------------- 154 (289)
+.+++ .+||++-|.||-++-. .+ +.+..+++.|+++++.+.+.|+++|++.|..-+.+..
T Consensus 222 AFvSi-MRGCdNMCtyCiVpft--rG--reRsrpi~siv~ev~~L~~qG~KeVTLLGQNVNSyrD~s~~~~~~a~~~~~~ 296 (552)
T KOG2492|consen 222 AFVSI-MRGCDNMCTYCIVPFT--RG--RERSRPIESIVEEVKRLAEQGVKEVTLLGQNVNSYRDNSAVQFSSAVPTNLS 296 (552)
T ss_pred hHHHH-HhccccccceEEEecc--CC--cccCCchHHHHHHHHHHhhcCceeeeeecccccccccchhhhhccCCccccC
Confidence 46777 8999999999987632 23 3344599999999999999999999987632111100
Q ss_pred --------c----hhHHHHHHHHHHHH-hcCceEEE-eCCCCCHHHHHHHHHcC--CCeEecCCCch-HHHHhccCCCCC
Q 022946 155 --------K----TNFNQILEYVKDIR-DMGMEVCC-TLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRS 217 (289)
Q Consensus 155 --------~----~~~~~l~e~i~~ik-~~~~~i~~-~~g~l~~e~l~~L~~aG--~~~v~i~let~-~~~~~~i~~~~~ 217 (289)
+ +.|..+++-+.... ++.+.+.. ++-.+++|+++.+.+.- +..+.+..++. .++++.++++.+
T Consensus 297 ~GFst~yK~K~gGl~Fa~LLd~vs~~~PemR~RFTSPHPKDfpdevl~li~~rdnickqihlPAqSgds~vLE~mrRgys 376 (552)
T KOG2492|consen 297 PGFSTVYKPKQGGLRFAHLLDQVSRADPEMRIRFTSPHPKDFPDEVLELIRDRDNICKQIHLPAQSGDSRVLEIMRRGYS 376 (552)
T ss_pred CCceeeecccCCCccHHHHHHHHhhhCcceEEEecCCCCCCChHHHHHHHHhCcchhheeeccccCCchHHHHHHHccCC
Confidence 0 22344444443332 23333322 14558899999888863 45566788999 999999999999
Q ss_pred HHHHHHHHHHHHH--cCCceeecEEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 218 YDERLETLKHVRE--AGINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 218 ~~~~~~~i~~~~~--~Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
.+..++....++. .|....++||.|+ |||.+|...++-.+++. +-+.+-.+++.-..+|..+.
T Consensus 377 reayl~lv~~Irs~iPgVglssdfitgfCgeTeedhq~t~sLlrqV--gYdv~~lFaysmR~kT~ay~ 442 (552)
T KOG2492|consen 377 REAYLELVAHIRSMIPGVGLSSDFITGFCGETEEDHQYTVSLLRQV--GYDVVFLFAYSMREKTRAYH 442 (552)
T ss_pred hHhhhhHHHHHHhhCCCCcceeeeEecccCCChHHHHHHHHHHHHh--ccCeeeeEEeeecccchhhh
Confidence 9999999999999 4778889999999 99999999999999998 47777788888777776654
|
|
| >TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-10 Score=98.22 Aligned_cols=130 Identities=15% Similarity=0.218 Sum_probs=94.9
Q ss_pred cCCCCcCCCCCCCCCCCCCCC-CCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCce
Q 022946 96 TGGCSEDCSYCPQSSRYDTGV-KGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME 174 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~-~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~ 174 (289)
+.+||++|.||.....+.... .....++.+++++.++.+...++..|+|+| |||+..+.+.++++.+++.|+.
T Consensus 29 ~~gCNlrC~~Cdt~~~~~~~~~~~~~~~s~~ei~~~i~~~~~~~~~~V~lTG------GEPll~~~l~~li~~l~~~g~~ 102 (238)
T TIGR03365 29 TGGCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKALGGGTPLHVSLSG------GNPALQKPLGELIDLGKAKGYR 102 (238)
T ss_pred eCCcCCcCcCCCCccccCcccCCccccCCHHHHHHHHHHHhCCCCCeEEEeC------CchhhhHhHHHHHHHHHHCCCC
Confidence 889999999998653222111 122347999999999877666788898887 6887778999999999988887
Q ss_pred E-EEeCCCCCHHHHHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEee
Q 022946 175 V-CCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIG 242 (289)
Q Consensus 175 i-~~~~g~l~~e~l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~G 242 (289)
+ ..|||.+..+. ++. ++.+.++++.... .....++...++++.+++ |..+...++++
T Consensus 103 v~leTNGtl~~~~---l~~--~d~v~vs~K~~~s-----g~~~~~~~~~~~ik~l~~-~~~~~vK~Vv~ 160 (238)
T TIGR03365 103 FALETQGSVWQDW---FRD--LDDLTLSPKPPSS-----GMETDWQALDDCIERLDD-GPQTSLKVVVF 160 (238)
T ss_pred EEEECCCCCcHHH---Hhh--CCEEEEeCCCCCC-----CCCCcHHHHHHHHHHhhh-cCceEEEEEEC
Confidence 6 45789876652 333 5688888876511 112358888888888887 67777777876
|
This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine. |
| >COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.9e-10 Score=98.05 Aligned_cols=170 Identities=19% Similarity=0.299 Sum_probs=116.4
Q ss_pred HhhhCCCeeEEeEeeccccCCCCcCCCCCCCCCCCC-CC---CCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCC
Q 022946 78 RHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYD-TG---VKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG 153 (289)
Q Consensus 78 r~~~~g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~-~~---~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~g 153 (289)
+....|.+..+. .|+.||.+|.||..+.... .. ....+..+.++|+++++.....|+ .++| |
T Consensus 22 ~~C~~G~KlVlF-----vTG~C~~~CfYCPvs~~r~gkdviyaNErpV~~~eDii~ea~~~~a~Ga---siTG------G 87 (353)
T COG2108 22 RLCVLGGKLVLF-----VTGLCNRSCFYCPVSDERKGKDVIYANERPVKSVEDIIEEAKLMDALGA---SITG------G 87 (353)
T ss_pred HHHhcCCceEEE-----EecccCCCcccCcCCHHhcCCcceeecccccCcHHHHHHHHHHhccccc---cccC------C
Confidence 344456666443 3999999999998864321 11 112344577888888776655554 4444 4
Q ss_pred Cc-hhHHHHHHHHHHHH-hcCc--e--EEEeCCCCCHHHHHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHH
Q 022946 154 RK-TNFNQILEYVKDIR-DMGM--E--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKH 227 (289)
Q Consensus 154 e~-~~~~~l~e~i~~ik-~~~~--~--i~~~~g~l~~e~l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~ 227 (289)
+| ..+++.+++++.+| +.|- . ..++.-..+++.+++|.+||+|.|-+..... .....+.++++++.
T Consensus 88 dPl~~ieR~~~~ir~LK~efG~~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~~~--------~~~~~e~~i~~l~~ 159 (353)
T COG2108 88 DPLLEIERTVEYIRLLKDEFGEDFHIHLYTTGILATEEALKALAEAGLDEIRFHPPRP--------GSKSSEKYIENLKI 159 (353)
T ss_pred ChHHHHHHHHHHHHHHHHhhccceeEEEeeccccCCHHHHHHHHhCCCCeEEecCCCc--------cccccHHHHHHHHH
Confidence 56 46789999999998 4443 3 3344445899999999999999998876311 12467899999999
Q ss_pred HHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccc
Q 022946 228 VREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINAL 272 (289)
Q Consensus 228 ~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~ 272 (289)
+++.|+.+..-+.. +..-.+.+.+.++++.+. +.+.++++.+
T Consensus 160 A~~~g~dvG~EiPa-ipg~e~~i~e~~~~~~~~--~~~FlNiNEL 201 (353)
T COG2108 160 AKKYGMDVGVEIPA-IPGEEEAILEFAKALDEN--GLDFLNINEL 201 (353)
T ss_pred HHHhCccceeecCC-CcchHHHHHHHHHHHHhc--ccceeeeeee
Confidence 99999987655432 322345788888888888 4677777765
|
|
| >COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-09 Score=95.15 Aligned_cols=172 Identities=19% Similarity=0.343 Sum_probs=124.4
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-cC------CcEEEEecccCCCCCCc-hhHHHHHHHHHH
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AG------STRFCMGAAWRDTIGRK-TNFNQILEYVKD 167 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~g------~~~i~i~~~~~~~~ge~-~~~~~l~e~i~~ 167 (289)
.-||+..|.||+..+. + -.+.++..||++.+..+.+ .| ++.|+|.| .||| .+++.+..+++-
T Consensus 108 QvGC~~~C~FCaTg~~---G--~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MG-----MGEPl~N~dnV~~a~~i 177 (349)
T COG0820 108 QVGCPVGCTFCATGQG---G--LNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMG-----MGEPLLNLDNVVKALEI 177 (349)
T ss_pred CCCcCCCCCeeccccc---c--ceeccCHHHHHHHHHHHHHhcCccccceeeeEEEec-----CCchhhhHHHHHHHHHh
Confidence 5599999999998742 2 2345899999998877652 22 55677776 4777 578889999888
Q ss_pred HH-hcCce-----E-EEeCCCCCHHHHHHHHHcCC-CeEecCCCch-HHHHhccCC---CCCHHHHHHHHHHHHH-cCCc
Q 022946 168 IR-DMGME-----V-CCTLGMLEKHQAIELKKAGL-TAYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVRE-AGIN 234 (289)
Q Consensus 168 ik-~~~~~-----i-~~~~g~l~~e~l~~L~~aG~-~~v~i~let~-~~~~~~i~~---~~~~~~~~~~i~~~~~-~Gi~ 234 (289)
+. ..|+. + ..|.| +.+ .+.+|.+..+ -.+.+|+.+. ++.++.+.| ..+.++.+++++...+ .|-.
T Consensus 178 ~~~~~G~~ls~R~iTvSTsG-i~~-~I~~l~~~~~~v~LAiSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~~r 255 (349)
T COG0820 178 INDDEGLGLSKRRITVSTSG-IVP-RIRKLADEQLGVALAISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSGRR 255 (349)
T ss_pred hcCcccccccceEEEEecCC-Cch-hHHHHHhhcCCeEEEEecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccCce
Confidence 77 33332 2 34466 333 3555553222 3677899999 999998887 3478999999999655 5555
Q ss_pred ee--ecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 235 VC--SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 235 v~--~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
|+ ..++-|+.+..++..++++.+..+ +..|++.+|.|.||+.+..
T Consensus 256 Vt~EY~Ll~~VND~~e~A~~L~~ll~~~---~~~VNLIP~Np~~~~~y~r 302 (349)
T COG0820 256 VTFEYVLLDGVNDSLEHAKELAKLLKGI---PCKVNLIPYNPVPGSDYER 302 (349)
T ss_pred EEEEeeecccccCCHHHHHHHHHHhcCC---CceEEEeecCCCCCCCccC
Confidence 54 455667788899999999998887 5699999999999999544
|
|
| >COG5014 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.6e-10 Score=87.78 Aligned_cols=167 Identities=18% Similarity=0.238 Sum_probs=113.2
Q ss_pred ccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHH-HHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCc
Q 022946 95 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKA-KEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGM 173 (289)
Q Consensus 95 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~-~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~ 173 (289)
.+-|||+.|.||..............++++++|.+.+.++ +..|.+.+-+.|+. +.. ..+.+++.|+-+-+. .
T Consensus 47 D~VGCnl~CayCw~y~r~~~~~rag~f~~P~eVaeRL~ei~K~~g~d~vRiSG~E-P~l----~~EHvlevIeLl~~~-t 120 (228)
T COG5014 47 DTVGCNLLCAYCWNYFRNLRPKRAGDFLSPEEVAERLLEISKKRGCDLVRISGAE-PIL----GREHVLEVIELLVNN-T 120 (228)
T ss_pred cccccceeeHHhhhhhhcCCccccccccCHHHHHHHHHHHHHhcCCcEEEeeCCC-ccc----cHHHHHHHHHhccCc-e
Confidence 3679999999997643322333455678999998887554 56899999888742 222 336677777655322 2
Q ss_pred eEEEeCCC---CCHHHHHHHHHcCCCeEecCCCch-HHHHhccCC--CCCHHHHHHHHHHHHHcCCceeecEEeec-CCC
Q 022946 174 EVCCTLGM---LEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT--TRSYDERLETLKHVREAGINVCSGGIIGL-GEA 246 (289)
Q Consensus 174 ~i~~~~g~---l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~--~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-get 246 (289)
-+.-|||. .++..+++|...---.|.+++.+. ++.+.+|.. +.-|..-+++++.+++.|+.+...+++++ .|.
T Consensus 121 FvlETNG~~~g~drslv~el~nr~nv~vRVsvKG~dpesF~kIT~asp~~F~~QL~aLr~L~~~g~rf~pA~~~~f~~Ed 200 (228)
T COG5014 121 FVLETNGLMFGFDRSLVDELVNRLNVLVRVSVKGWDPESFEKITGASPEYFRYQLKALRHLHGKGHRFWPAVVYDFFRED 200 (228)
T ss_pred EEEEeCCeEEecCHHHHHHHhcCCceEEEEEecCCCHHHHHHHhcCChHHHHHHHHHHHHHHhcCceeeehhhhccchhh
Confidence 24456665 388888988875344677999999 999999975 23478889999999999999998889888 332
Q ss_pred HHHHHHHHHHHhcCCCCCCeeee
Q 022946 247 EEDRVGLLHTLATLPTHPESVPI 269 (289)
Q Consensus 247 ~ed~~~~l~~l~~l~~~~~~v~i 269 (289)
...++...|.+.+.-|..+.+
T Consensus 201 --~~k~Lak~Lgehp~~P~~iev 221 (228)
T COG5014 201 --GLKELAKRLGEHPPIPCRIEV 221 (228)
T ss_pred --hHHHHHHHhccCCCCCcceee
Confidence 222344445444322334433
|
|
| >KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-11 Score=101.48 Aligned_cols=177 Identities=21% Similarity=0.340 Sum_probs=132.6
Q ss_pred eccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc
Q 022946 92 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM 171 (289)
Q Consensus 92 i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~ 171 (289)
++. |..||++|.||......... ...++++.++++..+..+..+|++.+-+.| |+|.-+.++.+.+..+...
T Consensus 15 isl-te~cnlrc~ycMpsegv~l~-pk~~~lav~eilrl~~~F~~qgv~knrLtg------geptIr~di~~i~~g~~~l 86 (323)
T KOG2876|consen 15 ISL-TEKCNLRCQYCMPSEGVPLK-PKRKLLAVSEILRLAGLFAPQGVDKNRLTG------GEPLIRQDIVPIVAGLSSL 86 (323)
T ss_pred hhh-hhccccccceechhcCCcCc-cchhhcchhhhHHhhhhhhHhhhhhhhhcC------CCCcccccccchhhhhhcc
Confidence 344 89999999999766432111 234557899999999999999999888876 5666667777777666533
Q ss_pred -Cce--EEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCC---ceeecEEeecC
Q 022946 172 -GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGI---NVCSGGIIGLG 244 (289)
Q Consensus 172 -~~~--i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi---~v~~~~i~Glg 244 (289)
+++ -.+++|..+...+-++.++|++.+++++++. ++.++.+.+...+..++..++.+.+.|. ++++.++-|+.
T Consensus 87 ~gLks~~ITtng~vl~R~lp~lhkaglssiNiSldtl~~aKfa~~~rr~g~v~V~~~iq~a~~lgy~pvkvn~v~~k~~n 166 (323)
T KOG2876|consen 87 PGLKSIGITTNGLVLARLLPQLHKAGLSSINISLDTLVRAKFAKLTRRKGFVKVWASIQLAIELGYNPVKVNCVVMKGLN 166 (323)
T ss_pred cchhhhceeccchhhhhhhhHHHhhcccchhhhhhhhhHHHHHHHhhhccHHHHHHHHhHHhhhCCCCcceeeEEEeccC
Confidence 333 1267888888999999999999999999999 9999999999999999999999998876 46666777773
Q ss_pred CCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCC
Q 022946 245 EAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ 281 (289)
Q Consensus 245 et~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~ 281 (289)
+ +++.++...-+ . ++-.|.+..|+|..|-...
T Consensus 167 ~--~ev~Dfv~~tr-~--~p~DVrfIe~mpf~gn~~~ 198 (323)
T KOG2876|consen 167 E--DEVFDFVLLTR-M--RPLDVRFIEFMPFDGNKWN 198 (323)
T ss_pred C--CcccceeeecC-C--CCcceEEEEecccCCCccc
Confidence 2 23444433322 2 4667788888887776544
|
|
| >PRK10076 pyruvate formate lyase II activase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.6e-09 Score=88.77 Aligned_cols=145 Identities=16% Similarity=0.142 Sum_probs=118.2
Q ss_pred CCCHHHHHHHHHHHHHc---CCcEEEEecccCCCCCCch-hHHHHHHHHHHHHhcCceE-EEeCCCCCHHHHHHHHHcCC
Q 022946 121 LMTKDAVMQAAQKAKEA---GSTRFCMGAAWRDTIGRKT-NFNQILEYVKDIRDMGMEV-CCTLGMLEKHQAIELKKAGL 195 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~---g~~~i~i~~~~~~~~ge~~-~~~~l~e~i~~ik~~~~~i-~~~~g~l~~e~l~~L~~aG~ 195 (289)
.+++|++++++..-..+ +..-|+|+| |||+ ..+.+.++++.+|+.|+.+ ..|+|..+.+.++.+... +
T Consensus 18 ~~t~eel~~~~~~~~~f~~~sggGVt~SG------GEPllq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~-~ 90 (213)
T PRK10076 18 DITLDALEREVMKDDIFFRTSGGGVTLSG------GEVLMQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKL-C 90 (213)
T ss_pred ccCHHHHHHHHHhhhHhhcCCCCEEEEeC------chHHcCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHh-c
Confidence 37999999998765432 334688876 6774 4456789999999888875 457999999999999886 9
Q ss_pred CeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCc--eeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccc
Q 022946 196 TAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN--VCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINAL 272 (289)
Q Consensus 196 ~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~--v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~ 272 (289)
|.+.+.+.+. ++.|+++.+ .+.+.++++++.+.+.|.. +.+.+|.|+.++.+++..+.+++.++ +++.+.+.+|
T Consensus 91 D~~l~DiK~~d~~~~~~~tG-~~~~~il~nl~~l~~~g~~v~iR~~vIPg~nd~~e~i~~ia~~l~~l--~~~~~~llpy 167 (213)
T PRK10076 91 DEVLFDLKIMDATQARDVVK-MNLPRVLENLRLLVSEGVNVIPRLPLIPGFTLSRENMQQALDVLIPL--GIKQIHLLPF 167 (213)
T ss_pred CEEEEeeccCCHHHHHHHHC-CCHHHHHHHHHHHHhCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHc--CCceEEEecC
Confidence 9999999999 899988865 5789999999999999976 56677889888999999999999998 4667777777
Q ss_pred eec
Q 022946 273 LAV 275 (289)
Q Consensus 273 ~p~ 275 (289)
-|.
T Consensus 168 h~~ 170 (213)
T PRK10076 168 HQY 170 (213)
T ss_pred Ccc
Confidence 764
|
|
| >COG1244 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.2e-08 Score=85.68 Aligned_cols=183 Identities=13% Similarity=0.161 Sum_probs=122.2
Q ss_pred ccCCCCc----CCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-cC---Cc-EEEEecccCCCCCCchhHHHHHHHH
Q 022946 95 KTGGCSE----DCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AG---ST-RFCMGAAWRDTIGRKTNFNQILEYV 165 (289)
Q Consensus 95 ~t~~C~~----~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~g---~~-~i~i~~~~~~~~ge~~~~~~l~e~i 165 (289)
.|.||.. .|.+|++..... . ...+.|.+.+.+..+.. +. .+ .|.+..+|.+.-.+.-..+....++
T Consensus 53 rT~GC~w~~~~gC~MCgY~~d~~----~-~~vs~E~l~~qfd~~~~k~~~~~~~~~vkIFTSGSFLD~~EVP~e~R~~Il 127 (358)
T COG1244 53 RTRGCRWYREGGCYMCGYPADSA----G-EPVSEENLINQFDEAYSKYEGKFDEFVVKIFTSGSFLDPEEVPREARRYIL 127 (358)
T ss_pred ecCCcceeccCCcceeccccccC----C-CCCCHHHHHHHHHHHHHHhcccCCCceEEEEcccccCChhhCCHHHHHHHH
Confidence 3999963 599999875422 1 22688888888766653 21 22 2444322222211112223344444
Q ss_pred HHHHhcC-c---eEEEeCCCCCHHHHHHHHHc--CC-CeEecCCCch-HHHH-hccCCCCCHHHHHHHHHHHHHcCCcee
Q 022946 166 KDIRDMG-M---EVCCTLGMLEKHQAIELKKA--GL-TAYNHNLDTS-REFY-SKIITTRSYDERLETLKHVREAGINVC 236 (289)
Q Consensus 166 ~~ik~~~-~---~i~~~~g~l~~e~l~~L~~a--G~-~~v~i~let~-~~~~-~~i~~~~~~~~~~~~i~~~~~~Gi~v~ 236 (289)
+.+.+.+ + -+.+.+..+++|.++++.+. |. ..|.+||||+ +++. ..|+++.+|++.+++++.++++|+.+.
T Consensus 128 ~~is~~~~v~~vvvESRpE~I~eE~l~e~~~il~gk~~EvaIGLETanD~ire~sINKGftF~df~~A~~~ir~~g~~vk 207 (358)
T COG1244 128 ERISENDNVKEVVVESRPEFIREERLEEITEILEGKIVEVAIGLETANDKIREDSINKGFTFEDFVRAAEIIRNYGAKVK 207 (358)
T ss_pred HHHhhccceeEEEeecCchhcCHHHHHHHHHhhCCceEEEEEecccCcHHHHHHhhhcCCcHHHHHHHHHHHHHcCCcee
Confidence 5555432 2 24555778999999999988 54 4688999999 8887 677889999999999999999999999
Q ss_pred ecEEeec--CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 237 SGGIIGL--GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 237 ~~~i~Gl--get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
+.+++=. ---.+.+.+.+..+.....+.+.+++++-..++||-++.
T Consensus 208 tYlllKP~FlSE~eAI~D~i~Si~~~~~~~d~iSinptnVqKgTlvE~ 255 (358)
T COG1244 208 TYLLLKPPFLSEKEAIEDVISSIVAAKPGTDTISINPTNVQKGTLVEK 255 (358)
T ss_pred EEEEecccccChHHHHHHHHHHHHHhccCCCeEEecccccchhhHHHH
Confidence 8888744 222344555555555443357999999999999997543
|
|
| >COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-08 Score=88.57 Aligned_cols=169 Identities=21% Similarity=0.254 Sum_probs=104.6
Q ss_pred eeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHH-HHHHHHHH-HHcCC--cEEEEecccCCCCCCchhHHHHHHHH-
Q 022946 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDA-VMQAAQKA-KEAGS--TRFCMGAAWRDTIGRKTNFNQILEYV- 165 (289)
Q Consensus 91 ~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~ee-i~~~~~~~-~~~g~--~~i~i~~~~~~~~ge~~~~~~l~e~i- 165 (289)
.+|. -.||.+.|.||+..............+.+++ +.+.++.- .+.+. ..|.+++ ..+++........+...+
T Consensus 32 ~inp-y~GC~h~C~YCYa~~~~~~~~~~~~~v~vk~n~~e~l~~el~~~~~k~~~i~is~-~TDpyqp~E~~~~ltR~il 109 (297)
T COG1533 32 TLNP-YRGCSHGCIYCYARPMHGYLPKSPTKVNVKENLLELLERELRKPGPKRTVIAISS-VTDPYQPIEKEYRLTRKIL 109 (297)
T ss_pred ecCC-cCCCCCCCceeecccccccccCCCceeeechhHHHHHHHHHhhccCCceEEEEec-CCCCCCcchHHHHHHHHHH
Confidence 3454 6799999999986543221111112234444 66666443 32233 3344443 445554212222333333
Q ss_pred HHHHhcCceEE-EeCCCC---CHHHHHHHHHcCCCeEecCCCch-HHHHhccCCC-CCHHHHHHHHHHHHHcCCceeecE
Q 022946 166 KDIRDMGMEVC-CTLGML---EKHQAIELKKAGLTAYNHNLDTS-REFYSKIITT-RSYDERLETLKHVREAGINVCSGG 239 (289)
Q Consensus 166 ~~ik~~~~~i~-~~~g~l---~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~-~~~~~~~~~i~~~~~~Gi~v~~~~ 239 (289)
+-+...+..+. .|-..+ |-+.+..+..-+...|.+++.+. +++.+.+-|. .+.++++++++.+.++|+++...+
T Consensus 110 ei~~~~~~~v~I~TKS~lv~RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l~eaGi~~~v~v 189 (297)
T COG1533 110 EILLKYGFPVSIVTKSALVLRDLDLLLELAERGKVRVAVSITTLDEELAKILEPRAPSPEERLEALKELSEAGIPVGLFV 189 (297)
T ss_pred HHHHHcCCcEEEEECCcchhhhHHHHHhhhhccceEEEEEeecCcHHHHHhcCCCCcCHHHHHHHHHHHHHCCCeEEEEE
Confidence 33334455432 232223 55667777777777899999998 6788888775 479999999999999999987765
Q ss_pred Eeec-CCCHHHHHHHHHHHhcCC
Q 022946 240 IIGL-GEAEEDRVGLLHTLATLP 261 (289)
Q Consensus 240 i~Gl-get~ed~~~~l~~l~~l~ 261 (289)
-.=+ +.+++|+.+.+..+.+.+
T Consensus 190 ~PIiP~~~d~e~e~~l~~~~~ag 212 (297)
T COG1533 190 APIIPGLNDEELERILEAAAEAG 212 (297)
T ss_pred ecccCCCChHHHHHHHHHHHHcC
Confidence 4444 667799999999888773
|
|
| >PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.7e-10 Score=85.97 Aligned_cols=101 Identities=22% Similarity=0.337 Sum_probs=60.6
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchh---HHHHHHHHHHHHhcC
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTN---FNQILEYVKDIRDMG 172 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~---~~~l~e~i~~ik~~~ 172 (289)
|++||++|.||....... ......++.+.+.+.++.+...++..|.+.| |||.. .+.+.++++.+++.+
T Consensus 12 t~~Cnl~C~yC~~~~~~~--~~~~~~~~~~~~~~ii~~~~~~~~~~i~l~G------GEPll~~~~~~l~~i~~~~k~~~ 83 (139)
T PF13353_consen 12 TNGCNLRCKYCFNSEIWK--FKRGKELSEEIIEEIIEELKNYGIKGIVLTG------GEPLLHENYDELLEILKYIKEKF 83 (139)
T ss_dssp EC--SB--TT-TTCCCS---TT-SEEC-HHHHHHHCHHHCCCCCCEEEEEC------STGGGHHSHHHHHHHHHHHHHTT
T ss_pred cCcccccCcCcCCcccCc--ccccccccchhhhhhhhHHhcCCceEEEEcC------CCeeeeccHhHHHHHHHHHHHhC
Confidence 788999999998754322 1223336777777777877788899999887 56766 899999999999665
Q ss_pred c--eEEEeCCCCCHHHHHHHHHcCCCeEecCCCc
Q 022946 173 M--EVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (289)
Q Consensus 173 ~--~i~~~~g~l~~e~l~~L~~aG~~~v~i~let 204 (289)
. .+..++|....+...++....++.+.++++.
T Consensus 84 ~~~~~~~tng~~~~~~~~~~~~~~~~~~~vsvd~ 117 (139)
T PF13353_consen 84 PKKIIILTNGYTLDELLDELIEELLDEIDVSVDG 117 (139)
T ss_dssp -SEEEEEETT--HHHHHHHHHHHHHHTESEEEE-
T ss_pred CCCeEEEECCCchhHHHhHHHHhccCccEEEEEE
Confidence 5 3567788766666543333334444444444
|
|
| >COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=9.2e-08 Score=80.67 Aligned_cols=153 Identities=14% Similarity=0.161 Sum_probs=109.7
Q ss_pred CCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCce-E
Q 022946 97 GGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME-V 175 (289)
Q Consensus 97 ~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~-i 175 (289)
.||+++|.||..+..+..+ .....+++++.+.+....++|++.|-++||+.. .....++++++.+... ++ +
T Consensus 126 sgCnfrCVfCQNwdISq~~--~g~~v~~e~La~i~~~~~~~GakNvN~Vgg~Pt-----p~lp~Ile~l~~~~~~-iPvv 197 (335)
T COG1313 126 SGCNFRCVFCQNWDISQFG--IGKEVTPEDLAEIILELRRHGAKNVNFVGGDPT-----PHLPFILEALRYASEN-IPVV 197 (335)
T ss_pred cCcceEEEEecCccccccC--CCeEecHHHHHHHHHHHHHhcCcceeecCCCCC-----CchHHHHHHHHHHhcC-CCEE
Confidence 5999999999876543322 334479999999999999999999999885422 2668899998877644 44 5
Q ss_pred EEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCC-CHHHHHHHHHHHHHc--CCceeecEEeecCCCHHHHH
Q 022946 176 CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTR-SYDERLETLKHVREA--GINVCSGGIIGLGEAEEDRV 251 (289)
Q Consensus 176 ~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~-~~~~~~~~i~~~~~~--Gi~v~~~~i~Glget~ed~~ 251 (289)
..+++..+.|.++.|... +|.+.-.+.-+ ++--.+..+-. -++-+.+++..+.+. |+-+..-++.|+-|. --.
T Consensus 198 wNSnmY~s~E~l~lL~gv-VDiyL~DfKYgNdeca~kySkvp~Y~eVv~rn~~~~~~~~g~~iiRHLVlPghlec--CTk 274 (335)
T COG1313 198 WNSNMYMSEETLKLLDGV-VDIYLPDFKYGNDECAEKYSKVPNYWEVVTRNILEAKEQVGGLIIRHLVLPGHLEC--CTK 274 (335)
T ss_pred EecCCccCHHHHHHhhcc-ceeeecccccCCHHHHHHhhcCCchHHHHHHHHHHHHHhcCceEEEEEecCCchhh--ccH
Confidence 677899999999988855 56555567666 66666666544 467778888888775 466777777777322 134
Q ss_pred HHHHHHhcC
Q 022946 252 GLLHTLATL 260 (289)
Q Consensus 252 ~~l~~l~~l 260 (289)
..++|+.+.
T Consensus 275 pI~~wiae~ 283 (335)
T COG1313 275 PILRWIAEN 283 (335)
T ss_pred HHHHHHHHh
Confidence 566777765
|
|
| >PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.7e-08 Score=72.63 Aligned_cols=82 Identities=23% Similarity=0.455 Sum_probs=45.8
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCC--cEEEEecccCCCCCCchh---HHHHHHHHHHHHh
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGS--TRFCMGAAWRDTIGRKTN---FNQILEYVKDIRD 170 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~--~~i~i~~~~~~~~ge~~~---~~~l~e~i~~ik~ 170 (289)
|.+||++|.||.....+.. .....++.+++.+.++.+.+.+. ..|.|+| |||.. .+.+.++++.+++
T Consensus 5 t~~Cnl~C~~C~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~G------GEPll~~~~~~l~~~i~~~~~ 76 (119)
T PF13394_consen 5 TSGCNLRCSYCYNKSSWSP--KKGEEMSIEELEEIIDELKEKGFRPSTVVFTG------GEPLLYLNPEDLIELIEYLKE 76 (119)
T ss_dssp -S--S---TTTS-TTTSST---GGGS--HHHHHHHHHHHHHTT----EEEEES------SSGGGSTTHHHHHHHHCTSTT
T ss_pred cCCcCCCCccCCcCccCCC--ccCCcccHhHHHHHHHHHHhcCCceEEEEEEC------CCCccccCHHHHHHHHHHHHh
Confidence 8999999999997532221 23344788999999987777765 4577776 56653 3778899988886
Q ss_pred cC--ceE-EEeCCCCCHH
Q 022946 171 MG--MEV-CCTLGMLEKH 185 (289)
Q Consensus 171 ~~--~~i-~~~~g~l~~e 185 (289)
.+ +.+ ..|+|.+..+
T Consensus 77 ~~~~~~i~i~TNg~~~~~ 94 (119)
T PF13394_consen 77 RGPEIKIRIETNGTLPTE 94 (119)
T ss_dssp -----EEEEEE-STTHHH
T ss_pred hCCCceEEEEeCCeeccc
Confidence 65 554 4567876533
|
|
| >TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein | Back alignment and domain information |
|---|
Probab=98.57 E-value=1e-06 Score=68.88 Aligned_cols=96 Identities=18% Similarity=0.304 Sum_probs=65.5
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceE
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEV 175 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i 175 (289)
..|||++|.||..+..+.. .....++.+++.+.++.... .+..|+|+| || ...+.+.++++.+++.|+.+
T Consensus 22 l~GCnlrC~~C~n~~~~~~--~~g~~lt~eel~~~I~~~~~-~~~gVt~SG------GE-l~~~~l~~ll~~lk~~Gl~i 91 (147)
T TIGR02826 22 ITGCPLGCKGCHSPESWHL--SEGTKLTPEYLTKTLDKYRS-LISCVLFLG------GE-WNREALLSLLKIFKEKGLKT 91 (147)
T ss_pred eCCCCCCCCCCCChHHcCC--CCCcCCCHHHHHHHHHHhCC-CCCEEEEec------hh-cCHHHHHHHHHHHHHCCCCE
Confidence 6699999999987643221 11234899999999877542 356788887 55 56688999999999888876
Q ss_pred EEeCCCCCHHHHHHHHHcCCCeEecCC
Q 022946 176 CCTLGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 176 ~~~~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
....|...++..+++.+. +|.+..|.
T Consensus 92 ~l~Tg~~~~~~~~~il~~-iD~l~~g~ 117 (147)
T TIGR02826 92 CLYTGLEPKDIPLELVQH-LDYLKTGR 117 (147)
T ss_pred EEECCCCCHHHHHHHHHh-CCEEEECh
Confidence 443344445555555544 67666554
|
Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes. |
| >KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.9e-06 Score=74.35 Aligned_cols=111 Identities=15% Similarity=0.209 Sum_probs=90.0
Q ss_pred CceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec-CC-CHH
Q 022946 172 GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GE-AEE 248 (289)
Q Consensus 172 ~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-ge-t~e 248 (289)
|+.+.+.+..-....+..|...||+++.+|+++. +++-+.-+++++...+.+....++++|++|.+++|..+ .- -+.
T Consensus 224 GiTIETRPDyC~~~Hl~~ML~YGCTRlEiGVQS~YEDVARDTNRGHTV~aVce~F~laKDaG~KvV~HMMPdLPNVg~eR 303 (554)
T KOG2535|consen 224 GITIETRPDYCLKRHLSDMLTYGCTRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDAGFKVVAHMMPDLPNVGMER 303 (554)
T ss_pred eEEeecCcccchhhhHHHHHhcCCceEEeccchhHHHhhhcccCCccHHHHHHHhhhhhccCceeehhhCCCCCCCchhh
Confidence 4445555666667778999999999999999999 99999999999999999999999999999999999877 32 334
Q ss_pred HHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 249 DRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 249 d~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
|+..+.++...-.-.++.+.+++-....||-|+.
T Consensus 304 DieqF~E~FenP~FR~DGLKiYPTLVIrGTGLyE 337 (554)
T KOG2535|consen 304 DIEQFKEYFENPAFRPDGLKIYPTLVIRGTGLYE 337 (554)
T ss_pred hHHHHHHHhcCcCcCCCcceecceEEEecccHHH
Confidence 6666666665422257888899999999998765
|
|
| >COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.6e-06 Score=74.39 Aligned_cols=173 Identities=16% Similarity=0.151 Sum_probs=106.7
Q ss_pred eeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcC-CcEEEEecccCCCCCCchhHHHHHHHHHHHH
Q 022946 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAG-STRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169 (289)
Q Consensus 91 ~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g-~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik 169 (289)
++.. |++|+..|+||.-..... .... . ++.+++.+.+..+.... +.+|.++||+. ....+..++++++.+++|.
T Consensus 114 Lll~-t~~C~vyCRyCfRr~~~~-~~~~-~-~~~~~~~~al~YIa~hPeI~eVllSGGDP-L~ls~~~L~~ll~~L~~Ip 188 (369)
T COG1509 114 LLLV-TGVCAVYCRYCFRRRFVG-QDNQ-G-FNKEEWDKALDYIAAHPEIREVLLSGGDP-LSLSDKKLEWLLKRLRAIP 188 (369)
T ss_pred EEEe-cCcccceeeecccccccc-cccc-c-CCHHHHHHHHHHHHcCchhheEEecCCCc-cccCHHHHHHHHHHHhcCC
Confidence 4444 999999999997543221 1111 2 58888888888887754 78888887653 3343444455555555444
Q ss_pred hc-CceEEE-----eCCCCCHHHHHHHHHcCCC-eEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCce-e-ecEE
Q 022946 170 DM-GMEVCC-----TLGMLEKHQAIELKKAGLT-AYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINV-C-SGGI 240 (289)
Q Consensus 170 ~~-~~~i~~-----~~g~l~~e~l~~L~~aG~~-~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v-~-~~~i 240 (289)
.. .+.+.+ .+.-++++.++.|++.+.. ++...++...| -.....++++.++++|+.+ + +-++
T Consensus 189 Hv~iiRi~TR~pvv~P~RIt~~L~~~l~~~~~~v~~~tH~NHp~E---------it~e~~~A~~~L~~aGv~l~NQsVLL 259 (369)
T COG1509 189 HVKIIRIGTRLPVVLPQRITDELCEILGKSRKPVWLVTHFNHPNE---------ITPEAREACAKLRDAGVPLLNQSVLL 259 (369)
T ss_pred ceeEEEeecccceechhhccHHHHHHHhccCceEEEEcccCChhh---------cCHHHHHHHHHHHHcCceeecchhee
Confidence 22 233332 2344678888888876542 22233433321 2356788999999999974 3 3455
Q ss_pred eecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCC
Q 022946 241 IGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP 279 (289)
Q Consensus 241 ~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTp 279 (289)
-|..++.+-+.++++.|.+.+ +.--.++..=+.+|+.
T Consensus 260 rGVND~~evl~~L~~~L~~~g--V~PYYl~~~D~~~G~~ 296 (369)
T COG1509 260 RGVNDDPEVLKELSRALFDAG--VKPYYLHQLDLVQGAA 296 (369)
T ss_pred cccCCCHHHHHHHHHHHHHcC--CcceEEeccCccCCcc
Confidence 688999999899999988874 3333344444455554
|
|
| >COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.4e-06 Score=77.47 Aligned_cols=173 Identities=16% Similarity=0.167 Sum_probs=122.1
Q ss_pred cCCCCcC---CCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcE-----EEEecccCCCCCCchhHHHHHHHHHH
Q 022946 96 TGGCSED---CSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTR-----FCMGAAWRDTIGRKTNFNQILEYVKD 167 (289)
Q Consensus 96 t~~C~~~---C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~-----i~i~~~~~~~~ge~~~~~~l~e~i~~ 167 (289)
..-|..- |.||+....-. .....++..|.++... +.|... +..+++ +....+.++.+.++.
T Consensus 34 ~~~c~~~~~~C~~cy~~v~~~----~~~~~~~~~v~~e~~~--~lg~~~e~~~~~~~~~~-----~d~~c~p~le~~~~r 102 (414)
T COG1625 34 CKDCIPYRFGCDDCYLSVNEL----DTGFIPPLMVEKEPDE--DLGLEFEEVLGAKQCGN-----GDTFCYPDLEPRGRR 102 (414)
T ss_pred CCcCCCccccccceeeEEecc----cCCCCCHhHhhccccc--ccccccccccceeecCC-----CCcccCcchhhhhhH
Confidence 4456554 99998764211 1133566676666542 233222 222321 233466778888877
Q ss_pred HHhcC----ceE--EEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEE
Q 022946 168 IRDMG----MEV--CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGI 240 (289)
Q Consensus 168 ik~~~----~~i--~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i 240 (289)
.+.++ +.. ...+|..+.+..+.+.++|++-+++++.|. +++++++.+....++.++.++++.+.++.+.+.++
T Consensus 103 ~~~~~~d~~~rL~~tsG~~~~lt~~~~~i~~~gvdev~~SVhtT~p~lR~klm~n~~A~~~le~L~~f~~~~~~v~a~iV 182 (414)
T COG1625 103 ARLYYKDDDIRLSFTSGSGFTLTNRAERIIDAGVDEVYFSVHTTNPELRAKLMKNPNAEQLLELLRRFAERCIEVHAQIV 182 (414)
T ss_pred HHhhcCCccceeeeeeccceeccchHHHHHHcCCCeeEEEEeeCCHHHHHHHhcCCcHHHHHHHHHHHHHhhhheeeEEE
Confidence 76544 333 233566677788889999999999999999 99999999999999999999999999999988887
Q ss_pred eecCCC-HHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCC
Q 022946 241 IGLGEA-EEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ 281 (289)
Q Consensus 241 ~Glget-~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~ 281 (289)
+=-|-+ -+++.++++.|.++ ++..+.++.+.|.--|.+.
T Consensus 183 l~PGvNdge~L~kT~~dL~~~--g~~~~~~~~~~pvGlt~~n 222 (414)
T COG1625 183 LCPGVNDGEELEKTLEDLEEW--GAHEVILMRVVPVGLTRYN 222 (414)
T ss_pred EcCCcCcHHHHHHHHHHHHHh--CcCceeEEEeecceeeecC
Confidence 744555 68899999999999 5677777766776655443
|
|
| >TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.9e-06 Score=65.80 Aligned_cols=85 Identities=16% Similarity=0.290 Sum_probs=56.7
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcC-CcEEEEecccCCCCCCch---hHHHHHHHHHHHHhc
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAG-STRFCMGAAWRDTIGRKT---NFNQILEYVKDIRDM 171 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g-~~~i~i~~~~~~~~ge~~---~~~~l~e~i~~ik~~ 171 (289)
..|||++|.||..+..+.. .....++.+++.+.++.+.+.+ +..|+|.| |||. .++.+.++++.+++.
T Consensus 22 ~~gCnl~C~~C~n~~~~~~--~~g~~~~~~~~~~i~~~l~~~~~~~gVt~sG------GEPllq~~~~~l~~ll~~~k~~ 93 (154)
T TIGR02491 22 VAGCKHHCEGCFNKETWNF--NGGKEFTEALEKEIIRDLNDNPLIDGLTLSG------GDPLYPRNVEELIELVKKIKAE 93 (154)
T ss_pred ECCCCCCCcCCCcccccCC--CCCCcCCHHHHHHHHHHHHhcCCcCeEEEeC------hhhCCCCCHHHHHHHHHHHHHh
Confidence 4689999999987643221 1223478666666666666654 56788876 5564 347899999998854
Q ss_pred -Cce-EEEeCCCCCHHHHH
Q 022946 172 -GME-VCCTLGMLEKHQAI 188 (289)
Q Consensus 172 -~~~-i~~~~g~l~~e~l~ 188 (289)
+.. +..++|...++.++
T Consensus 94 ~~~~~~~~~tG~~~~~~~~ 112 (154)
T TIGR02491 94 FPEKDIWLWTGYTWEEILE 112 (154)
T ss_pred CCCCCEEEeeCccHHHHhc
Confidence 554 66678876665553
|
This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer. |
| >PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.7e-06 Score=65.87 Aligned_cols=84 Identities=18% Similarity=0.323 Sum_probs=52.4
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCC--cEEEEecccCCCCCCch---hHHHHHHHHHHHHh
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGS--TRFCMGAAWRDTIGRKT---NFNQILEYVKDIRD 170 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~--~~i~i~~~~~~~~ge~~---~~~~l~e~i~~ik~ 170 (289)
..|||++|.||..+..+.. .....++.+.+.+.++.+...+. ..|+|.| |||. ..+.+.++++.+++
T Consensus 23 ~~GCnl~C~~C~n~~~~~~--~~g~~~~~~~~~~il~~~~~~~~~~~gvt~sG------GEPl~~~~~~~l~~l~~~~k~ 94 (154)
T PRK11121 23 VSGCVHQCPGCYNKSTWRL--NSGHPFTKEMEDQIIADLNDTRIKRQGLSLSG------GDPLHPQNVPDILKLVQRVKA 94 (154)
T ss_pred cCCCCCcCcCCCChhhccC--CCCcccCHHHHHHHHHHHHHhCCCCCcEEEEC------CCccchhhHHHHHHHHHHHHH
Confidence 5799999999987643221 11222454444444555544443 5678876 4564 45788888888874
Q ss_pred c--CceEEEeCCCCCHHHH
Q 022946 171 M--GMEVCCTLGMLEKHQA 187 (289)
Q Consensus 171 ~--~~~i~~~~g~l~~e~l 187 (289)
. +..+.+++|...++..
T Consensus 95 ~~~~~~i~~~tGy~~eel~ 113 (154)
T PRK11121 95 ECPGKDIWVWTGYKLDELN 113 (154)
T ss_pred HCCCCCEEEecCCCHHHHH
Confidence 3 4667778887755543
|
|
| >COG1964 Predicted Fe-S oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.1e-05 Score=70.49 Aligned_cols=142 Identities=18% Similarity=0.163 Sum_probs=102.3
Q ss_pred CCHHHHHHHHHHHHHcC---CcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCce-EE-EeCCC---CCHHHHHHHHHc
Q 022946 122 MTKDAVMQAAQKAKEAG---STRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME-VC-CTLGM---LEKHQAIELKKA 193 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g---~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~-i~-~~~g~---l~~e~l~~L~~a 193 (289)
-+.|+|.+.++.++... ...|-+. +|||+..+++.++++.+++.|+. +. .+||. .+.+..+.|++|
T Consensus 91 pt~eqi~~Ml~~lk~e~p~~~~aIq~t------GGEPTvr~DL~eiv~~a~e~g~~hVqinTnGirlA~~~~~~~~l~~a 164 (475)
T COG1964 91 PTLEQIREMLRNLKKEHPVGANAVQFT------GGEPTLRDDLIEIIKIAREEGYDHVQLNTNGIRLAFDPEYVKKLREA 164 (475)
T ss_pred CCHHHHHHHHHHHHhcCCCCCceeEec------CCCccchhhHHHHHHHHhhcCccEEEEccCceeeccCHHHHHHHHhc
Confidence 58899999998887642 3344333 48899999999999999988774 43 44664 578999999999
Q ss_pred CCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec--CCCHHHHHHHHHHHhcCCCCCCeeeec
Q 022946 194 GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL--GEAEEDRVGLLHTLATLPTHPESVPIN 270 (289)
Q Consensus 194 G~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl--get~ed~~~~l~~l~~l~~~~~~v~i~ 270 (289)
|+..|+++.++. ++.+.++ .-++..+++.++++|+... .++.++ |.++.++-+.+++.... ++.|.--
T Consensus 165 g~~tvYlsFDG~~e~~~~~~-----~~eIk~alen~r~~g~~sv-VLVptl~rgvNd~~lG~iirfa~~n---~dvVrgV 235 (475)
T COG1964 165 GVNTVYLSFDGVTPKTNWKN-----HWEIKQALENCRKAGLPSV-VLVPTLIRGVNDHELGAIIRFALNN---IDVVRGV 235 (475)
T ss_pred CCcEEEEecCCCCCCchhhH-----hhhhHHHHHHHHhcCCCcE-EEEeehhcccChHHHHHHHHHHHhc---ccccccc
Confidence 999999999998 8876665 4455559999999998611 123334 66777788888887654 4444444
Q ss_pred cceecCCC
Q 022946 271 ALLAVKGT 278 (289)
Q Consensus 271 ~~~p~pgT 278 (289)
.|.|+.-|
T Consensus 236 nfQPVslt 243 (475)
T COG1964 236 NFQPVSLT 243 (475)
T ss_pred ceEEEEEe
Confidence 45554433
|
|
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.2e-05 Score=65.95 Aligned_cols=142 Identities=14% Similarity=0.163 Sum_probs=104.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcC--ceE--EEeCCCCCHHHHHHHHHcCC
Q 022946 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG--MEV--CCTLGMLEKHQAIELKKAGL 195 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~--~~i--~~~~g~l~~e~l~~L~~aG~ 195 (289)
..++.++.++.++.+.+.|++.|.++++...... | ..+...++++.+++.+ ..+ .++++ .+.++.++++|+
T Consensus 14 ~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~-p-~~~~~~~~i~~l~~~~~~~~~~~l~~~~---~~~i~~a~~~g~ 88 (265)
T cd03174 14 ATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAV-P-QMEDDWEVLRAIRKLVPNVKLQALVRNR---EKGIERALEAGV 88 (265)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeccCcCcccc-c-cCCCHHHHHHHHHhccCCcEEEEEccCc---hhhHHHHHhCCc
Confidence 3369999999999999999999998764322111 1 2245566666666433 443 33344 788999999999
Q ss_pred CeEecCCCchHHHHhcc--CCC--CCHHHHHHHHHHHHHcCCceeecEEeecC--CCHHHHHHHHHHHhcCCCCCCeeee
Q 022946 196 TAYNHNLDTSREFYSKI--ITT--RSYDERLETLKHVREAGINVCSGGIIGLG--EAEEDRVGLLHTLATLPTHPESVPI 269 (289)
Q Consensus 196 ~~v~i~let~~~~~~~i--~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i~Glg--et~ed~~~~l~~l~~l~~~~~~v~i 269 (289)
+.|.+.+.+.+ .+... +++ ..++..++.++.+++.|+.+...++.-.+ .+++++.+.++.+.++ +++.+.+
T Consensus 89 ~~i~i~~~~s~-~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~--g~~~i~l 165 (265)
T cd03174 89 DEVRIFDSASE-THSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEA--GADEISL 165 (265)
T ss_pred CEEEEEEecCH-HHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHc--CCCEEEe
Confidence 99999887763 33332 333 26899999999999999998888866667 9999999999999999 5666654
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.13 E-value=9.1e-06 Score=67.58 Aligned_cols=83 Identities=17% Similarity=0.318 Sum_probs=56.6
Q ss_pred cCCCCcCCCCCCCCCCCCCC-CCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCce
Q 022946 96 TGGCSEDCSYCPQSSRYDTG-VKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME 174 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~-~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~ 174 (289)
+.|||++|.+|.....+... ...+..++.++|++.++... .+...|+++| |||...+.+.++++.+++.|++
T Consensus 29 ~~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~-~~~~~V~lTG------GEP~~~~~l~~Ll~~l~~~g~~ 101 (212)
T COG0602 29 FAGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLG-YKARGVSLTG------GEPLLQPNLLELLELLKRLGFR 101 (212)
T ss_pred cCCCCCCCCCCCChhhhcccccCCCCccCHHHHHHHHHhcC-CCcceEEEeC------CcCCCcccHHHHHHHHHhCCce
Confidence 67999999999864222111 12445589999998887542 2344788877 6786667888999988877877
Q ss_pred EEE-eCCCCCHH
Q 022946 175 VCC-TLGMLEKH 185 (289)
Q Consensus 175 i~~-~~g~l~~e 185 (289)
+.. ++|.+...
T Consensus 102 ~~lETngti~~~ 113 (212)
T COG0602 102 IALETNGTIPVW 113 (212)
T ss_pred EEecCCCCcccc
Confidence 644 45655443
|
|
| >TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase | Back alignment and domain information |
|---|
Probab=97.98 E-value=6.8e-05 Score=68.00 Aligned_cols=104 Identities=16% Similarity=0.192 Sum_probs=80.3
Q ss_pred eCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEe--ecCCCHHHHHHHH
Q 022946 178 TLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGII--GLGEAEEDRVGLL 254 (289)
Q Consensus 178 ~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~--Glget~ed~~~~l 254 (289)
|...++++.+++..+.++.-+++|+.+. ++.+.++.+....+++++.++++.++||.+.+.+++ |+.+ .+++.+++
T Consensus 122 TLTNl~~~d~~RI~~~~lspl~iSVhat~p~lR~~ll~n~~a~~il~~l~~l~~~~I~~h~qiVlcPGiND-g~~L~~Ti 200 (433)
T TIGR03279 122 TLTNLPPAEWQRIEQLRLSPLYVSVHATEPSLRARLLKNPRAGLILEQLKWFQERRLQLHAQVVVCPGIND-GKHLERTL 200 (433)
T ss_pred eecCCCHHHHHHHHHcCCCCEEEEEecCCHHHHHHHhCCCCHHHHHHHHHHHHHcCCeEEEEEEEcCCcCC-HHHHHHHH
Confidence 3445889999999999999999999999 999999999889999999999999999998877665 5432 36789999
Q ss_pred HHHhcCCC-CCCeeeeccceecCCCCCCC
Q 022946 255 HTLATLPT-HPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 255 ~~l~~l~~-~~~~v~i~~~~p~pgTpl~~ 282 (289)
..|.+++. ....|.=...+|..=|.+..
T Consensus 201 ~dL~~~~~~~~P~v~S~avVPVGlTk~R~ 229 (433)
T TIGR03279 201 RDLAQFHDGDWPTVLSVAVVPVGLTRFRP 229 (433)
T ss_pred HHHHhhcccCCCceeEEEEEccccccCCC
Confidence 99988721 01222223346666665544
|
Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis. |
| >cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0021 Score=55.32 Aligned_cols=138 Identities=14% Similarity=0.110 Sum_probs=94.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcC--ceEEEeCCCCCHHHHHHHHHcCCCe
Q 022946 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG--MEVCCTLGMLEKHQAIELKKAGLTA 197 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~--~~i~~~~g~l~~e~l~~L~~aG~~~ 197 (289)
..++.++.++.++.+.+.|++.|-++. |... +...+.++.+...+ ..+ ......+.+.++...++|++.
T Consensus 17 ~~~s~~~k~~i~~~L~~~Gv~~IEvG~----P~~~----~~~~~~~~~l~~~~~~~~v-~~~~r~~~~di~~a~~~g~~~ 87 (262)
T cd07948 17 AFFDTEDKIEIAKALDAFGVDYIELTS----PAAS----PQSRADCEAIAKLGLKAKI-LTHIRCHMDDARIAVETGVDG 87 (262)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEC----CCCC----HHHHHHHHHHHhCCCCCcE-EEEecCCHHHHHHHHHcCcCE
Confidence 448999999999999999999998864 1112 33333344433222 223 222346678899999999999
Q ss_pred EecCCCchHHH-HhccCC--CCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeee
Q 022946 198 YNHNLDTSREF-YSKIIT--TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVP 268 (289)
Q Consensus 198 v~i~let~~~~-~~~i~~--~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~ 268 (289)
|.+.+-+.+.. ..+.+. ....+...+.++.+++.|+.+..++.-.++-+++.+.+.++.+.++ +++.+.
T Consensus 88 i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~--g~~~i~ 159 (262)
T cd07948 88 VDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKL--GVNRVG 159 (262)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHc--CCCEEE
Confidence 88877555322 222222 1235667777899999999998888777777788999999999888 456543
|
Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th |
| >cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0032 Score=54.16 Aligned_cols=139 Identities=13% Similarity=0.157 Sum_probs=94.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--CceEEEeCCCCCHHHHHHHHHcCCCe
Q 022946 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTA 197 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~i~~~~g~l~~e~l~~L~~aG~~~ 197 (289)
..++.++.++.++.+.+.|++.|.++. +..+ +.. .+.++.+.+. +..+. .....+.+.++...++|++.
T Consensus 15 ~~~~~~~k~~i~~~L~~~Gv~~iE~g~---p~~~-~~~----~e~~~~l~~~~~~~~~~-~~~r~~~~~v~~a~~~g~~~ 85 (259)
T cd07939 15 VAFSREEKLAIARALDEAGVDEIEVGI---PAMG-EEE----REAIRAIVALGLPARLI-VWCRAVKEDIEAALRCGVTA 85 (259)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEec---CCCC-HHH----HHHHHHHHhcCCCCEEE-EeccCCHHHHHHHHhCCcCE
Confidence 347999999999999999999997753 1112 222 2344444432 33332 12335677889999999999
Q ss_pred EecCCCch-HHHHhccCCC--CCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeee
Q 022946 198 YNHNLDTS-REFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPI 269 (289)
Q Consensus 198 v~i~let~-~~~~~~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i 269 (289)
+.+.+-.. ....++++.+ ...+...+.++.+++.|+.+..++......+++.+.+.++.+.+. +++.+.+
T Consensus 86 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~--G~~~i~l 158 (259)
T cd07939 86 VHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEA--GADRLRF 158 (259)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHC--CCCEEEe
Confidence 98877665 3344444432 245677789999999999888777666567789999999998888 4565543
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox |
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0035 Score=55.87 Aligned_cols=135 Identities=16% Similarity=0.099 Sum_probs=94.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEeccc-----CCCCCCc--hhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAW-----RDTIGRK--TNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAG 194 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~-----~~~~ge~--~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG 194 (289)
++.+++.+.++.+.+.|++.|.++-++ ....|.+ ...+++.++.+.++...+.....+|.-+.+.++...++|
T Consensus 21 f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~g 100 (333)
T TIGR03217 21 FTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAAYDAG 100 (333)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccCccCHHHHHHHHHCC
Confidence 799999999999999999999885211 1111222 234555555544443333334445666778899999999
Q ss_pred CCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeee
Q 022946 195 LTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPI 269 (289)
Q Consensus 195 ~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i 269 (289)
++.|.+..-.. ..+...+.++.+++.|+.+...++....-+++.+.+.++.+.+. +++.+.+
T Consensus 101 vd~iri~~~~~-----------e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~--Ga~~i~i 162 (333)
T TIGR03217 101 ARTVRVATHCT-----------EADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESY--GADCVYI 162 (333)
T ss_pred CCEEEEEeccc-----------hHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhc--CCCEEEE
Confidence 99988765221 23457889999999999988887777777889999999988888 4565543
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0064 Score=52.52 Aligned_cols=136 Identities=15% Similarity=0.174 Sum_probs=93.5
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCC--C-CCCc--hhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcC
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRD--T-IGRK--TNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAG 194 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~--~-~ge~--~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG 194 (289)
.++.++..+.++.+.+.|++.|-++-.... . .+.. ...+.+..+.+..+ +..+...+..+..+.+.++...+.|
T Consensus 16 ~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g 95 (266)
T cd07944 16 DFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASGSV 95 (266)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHHhcCC
Confidence 379999999999999999999977521100 0 0000 01233333333322 2233344455556678888889999
Q ss_pred CCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeee
Q 022946 195 LTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPI 269 (289)
Q Consensus 195 ~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i 269 (289)
++.|.+... ...++...+.++.+++.|+.+..+++-..+.+++.+.+.++.+.+. +++.+.+
T Consensus 96 v~~iri~~~-----------~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~--g~~~i~l 157 (266)
T cd07944 96 VDMIRVAFH-----------KHEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEI--KPDVFYI 157 (266)
T ss_pred cCEEEEecc-----------cccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhC--CCCEEEE
Confidence 998887652 2478899999999999999988888777778889999999998888 4665543
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0045 Score=55.95 Aligned_cols=139 Identities=17% Similarity=0.227 Sum_probs=96.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCc--eEEEeCCCCCHHHHHHHHHcCCCe
Q 022946 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGM--EVCCTLGMLEKHQAIELKKAGLTA 197 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~--~i~~~~g~l~~e~l~~L~~aG~~~ 197 (289)
..++.++.++.++.+.+.|++.|.++. +...+.. .+.++.+.+.+. ++.. ......+.++...++|++.
T Consensus 17 ~~~s~~~k~~ia~~L~~~Gv~~IEvG~----p~~~~~~----~e~i~~i~~~~~~~~v~~-~~r~~~~di~~a~~~g~~~ 87 (363)
T TIGR02090 17 VSLTVEQKVEIARKLDELGVDVIEAGF----PIASEGE----FEAIKKISQEGLNAEICS-LARALKKDIDKAIDCGVDS 87 (363)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC----CCCChHH----HHHHHHHHhcCCCcEEEE-EcccCHHHHHHHHHcCcCE
Confidence 348999999999999999999998753 1121222 355555554332 3322 2235678899999999999
Q ss_pred EecCCCchH-HHHhccCCC--CCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeee
Q 022946 198 YNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPI 269 (289)
Q Consensus 198 v~i~let~~-~~~~~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i 269 (289)
|.+.+-+.+ ....+++.+ ...+...+.++.+++.|+.+..++.-....+++.+.+.++.+.+. +++.+.+
T Consensus 88 i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~--g~~~i~l 160 (363)
T TIGR02090 88 IHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEA--GADRINI 160 (363)
T ss_pred EEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhC--CCCEEEE
Confidence 988776663 333344332 246788889999999999988776655566788889999988888 4565543
|
Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes. |
| >PF00682 HMGL-like: HMGL-like of this family is not conserved in other members | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00098 Score=56.53 Aligned_cols=142 Identities=15% Similarity=0.220 Sum_probs=94.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHH-HHHHHHcCCCeEec
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQ-AIELKKAGLTAYNH 200 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~-l~~L~~aG~~~v~i 200 (289)
++.++.++.++.+.+.|++.|.++. +...+..++.+.++.+.+....+...+....-+.+. ++.++++|++.+.+
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~i~i 86 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGF----PFASEDDFEQVRRLREALPNARLQALCRANEEDIERAVEAAKEAGIDIIRI 86 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEH----CTSSHHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHHHTTSSEEEE
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcc----cccCHHHHHHhhhhhhhhcccccceeeeehHHHHHHHHHhhHhccCCEEEe
Confidence 7899999999999999999998862 112244566666666555553333334443333333 56677899999988
Q ss_pred CCCchHHHH-hccCC--CCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeee
Q 022946 201 NLDTSREFY-SKIIT--TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPI 269 (289)
Q Consensus 201 ~let~~~~~-~~i~~--~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i 269 (289)
.+...+... .+++. ....+...+.++.+++.|+.+..+..-...-+++++.+.++.+.++ +++.+.+
T Consensus 87 ~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~i~l 156 (237)
T PF00682_consen 87 FISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEA--GADIIYL 156 (237)
T ss_dssp EEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHH--T-SEEEE
T ss_pred cCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHc--CCeEEEe
Confidence 776653322 33322 1236777788888999999996666655566889999999999888 5676654
|
are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A .... |
| >PRK11858 aksA trans-homoaconitate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0042 Score=56.45 Aligned_cols=139 Identities=15% Similarity=0.182 Sum_probs=95.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCce--EEEeCCCCCHHHHHHHHHcCCCe
Q 022946 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME--VCCTLGMLEKHQAIELKKAGLTA 197 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~--i~~~~g~l~~e~l~~L~~aG~~~ 197 (289)
..++.++.++.++.+.+.|++.|-++. +..+ +.. .+.++.+.+.+.. +.+ .+....+.++...++|++.
T Consensus 21 ~~~s~e~k~~ia~~L~~~GV~~IE~G~---p~~~-~~~----~e~i~~i~~~~~~~~i~~-~~r~~~~di~~a~~~g~~~ 91 (378)
T PRK11858 21 VVFTNEEKLAIARMLDEIGVDQIEAGF---PAVS-EDE----KEAIKAIAKLGLNASILA-LNRAVKSDIDASIDCGVDA 91 (378)
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEEEeC---CCcC-hHH----HHHHHHHHhcCCCeEEEE-EcccCHHHHHHHHhCCcCE
Confidence 347999999999999999999997643 1112 222 3344444433333 322 2334577799999999999
Q ss_pred EecCCCch-HHHHhccCCC--CCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeee
Q 022946 198 YNHNLDTS-REFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPI 269 (289)
Q Consensus 198 v~i~let~-~~~~~~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i 269 (289)
|.+.+.+. .....+++.. ...+...+.++.+++.|+.+..+..-+...+++.+.+.++.+.+. +++.+.+
T Consensus 92 i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~--Ga~~I~l 164 (378)
T PRK11858 92 VHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEA--GADRVRF 164 (378)
T ss_pred EEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhC--CCCEEEE
Confidence 99988777 3344444432 245666778899999999988776665566788889999988888 4565543
|
|
| >PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.011 Score=52.83 Aligned_cols=135 Identities=13% Similarity=0.047 Sum_probs=90.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccC-----CCCCCc--hhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWR-----DTIGRK--TNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAG 194 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~-----~~~ge~--~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG 194 (289)
++.+++.+.++.+.+.|++.|.++-++. ..+|.+ ...+.+..+.+..+...+.....+|.-+.+.++...++|
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~g 101 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPGIGTVDDLKMAYDAG 101 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccCcccHHHHHHHHHcC
Confidence 7999999999999999999988752110 001211 122222222222222222233445666678899999999
Q ss_pred CCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeee
Q 022946 195 LTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPI 269 (289)
Q Consensus 195 ~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i 269 (289)
++.|.+..-.. ..+...+.++.+++.|+.+...++....-+++.+.+.++.+.+. +++.+.+
T Consensus 102 vd~iri~~~~~-----------e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~--Ga~~i~i 163 (337)
T PRK08195 102 VRVVRVATHCT-----------EADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESY--GAQCVYV 163 (337)
T ss_pred CCEEEEEEecc-----------hHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhC--CCCEEEe
Confidence 99988764221 23567889999999999988888777677889999999999888 4665543
|
|
| >cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.016 Score=49.92 Aligned_cols=131 Identities=14% Similarity=0.108 Sum_probs=86.8
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEeccc-----CC---CCCCchhHHHHHHHHHHHHh--cCce--EEEeCCCCCHHHHH
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAW-----RD---TIGRKTNFNQILEYVKDIRD--MGME--VCCTLGMLEKHQAI 188 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~-----~~---~~ge~~~~~~l~e~i~~ik~--~~~~--i~~~~g~l~~e~l~ 188 (289)
.++.++.++.++.+.+.|++.+-++... .. +... .. .+.++.+++ .+.+ ....++....+.++
T Consensus 18 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~-~~----~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~ 92 (263)
T cd07943 18 QFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAH-TD----EEYLEAAAEALKQAKLGVLLLPGIGTVDDLK 92 (263)
T ss_pred ecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCC-Ch----HHHHHHHHHhccCCEEEEEecCCccCHHHHH
Confidence 3799999999999999999998876210 00 1111 12 223333321 1333 33445556678899
Q ss_pred HHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeee
Q 022946 189 ELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVP 268 (289)
Q Consensus 189 ~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~ 268 (289)
...++|++.+.+..-.. ......+.++.+++.|+.+..+++-...-+++.+.+.++.+.+. +++.+.
T Consensus 93 ~a~~~g~~~iri~~~~s-----------~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~--G~d~i~ 159 (263)
T cd07943 93 MAADLGVDVVRVATHCT-----------EADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESY--GADCVY 159 (263)
T ss_pred HHHHcCCCEEEEEechh-----------hHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHc--CCCEEE
Confidence 99999999888755332 12456888889999998887777655566788888888888887 456554
Q ss_pred e
Q 022946 269 I 269 (289)
Q Consensus 269 i 269 (289)
+
T Consensus 160 l 160 (263)
T cd07943 160 V 160 (263)
T ss_pred E
Confidence 3
|
4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate |
| >TIGR02660 nifV_homocitr homocitrate synthase NifV | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.011 Score=53.54 Aligned_cols=138 Identities=14% Similarity=0.167 Sum_probs=92.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--CceEEEeCCCCCHHHHHHHHHcCCCe
Q 022946 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTA 197 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~i~~~~g~l~~e~l~~L~~aG~~~ 197 (289)
..++.++.++.++.+.+.|++.|.++. +..+ +.. .+.++.+.+. +.++. .....+.+.++...++|++.
T Consensus 18 ~~~s~~~k~~ia~~L~~~Gv~~IEvG~---p~~~-~~~----~e~i~~i~~~~~~~~i~-~~~r~~~~di~~a~~~g~~~ 88 (365)
T TIGR02660 18 VAFTAAEKLAIARALDEAGVDELEVGI---PAMG-EEE----RAVIRAIVALGLPARLM-AWCRARDADIEAAARCGVDA 88 (365)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC---CCCC-HHH----HHHHHHHHHcCCCcEEE-EEcCCCHHHHHHHHcCCcCE
Confidence 348999999999999999999998753 1112 222 3344444432 23332 23335688899999999999
Q ss_pred EecCCCch-HHHHhccCCC--CCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeee
Q 022946 198 YNHNLDTS-REFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVP 268 (289)
Q Consensus 198 v~i~let~-~~~~~~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~ 268 (289)
|.+.+-+. .-...+++.. ...+...++++.+++.|+.+..+..-+..-+++.+.+.++.+.+. +++.+.
T Consensus 89 i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~--Ga~~i~ 160 (365)
T TIGR02660 89 VHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEA--GADRFR 160 (365)
T ss_pred EEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHc--CcCEEE
Confidence 98887665 3333444332 234556688999999999887766655556678888888888887 455543
|
This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase. |
| >cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.03 Score=48.47 Aligned_cols=138 Identities=16% Similarity=0.160 Sum_probs=92.3
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--CceEEEeCCCCCHHHHHHHHHcC----
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAG---- 194 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~i~~~~g~l~~e~l~~L~~aG---- 194 (289)
.++.++.++.++.+.+.|++.|.++.. ...+..+ +.++.+.+. +..+..-. ....+.++...++|
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~----~~~~~~~----~~~~~l~~~~~~~~~~~l~-r~~~~~v~~a~~~~~~~~ 86 (268)
T cd07940 16 SLTPEEKLEIARQLDELGVDVIEAGFP----AASPGDF----EAVKRIAREVLNAEICGLA-RAVKKDIDAAAEALKPAK 86 (268)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCC----CCCHHHH----HHHHHHHHhCCCCEEEEEc-cCCHhhHHHHHHhCCCCC
Confidence 479999999999999999999987541 1112232 444544432 33332211 12366677788888
Q ss_pred CCeEecCCCch-HHHHhccCCC--CCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeee
Q 022946 195 LTAYNHNLDTS-REFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPI 269 (289)
Q Consensus 195 ~~~v~i~let~-~~~~~~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i 269 (289)
++.|.+..-.. .....+++.+ ...+...+.++.+++.|+.+..+.+.+..-+++.+.+.++.+.++ +++.+.+
T Consensus 87 ~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~--G~~~i~l 162 (268)
T cd07940 87 VDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEA--GATTINI 162 (268)
T ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHc--CCCEEEE
Confidence 89888766444 3333334332 246778889999999999988776666566788889999999888 4665543
|
2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h |
| >PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.03 Score=48.92 Aligned_cols=144 Identities=13% Similarity=0.064 Sum_probs=91.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-cCceEEEeCCCCCHHHHHHHHHcCCCeE
Q 022946 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAY 198 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~~~~i~~~~g~l~~e~l~~L~~aG~~~v 198 (289)
..++.++.++.++.+.+.|++.|-+++... +.--|.. .+-.+.++.+.+ .+..+..-. .+.+.+++-.++|++.|
T Consensus 21 ~~~s~e~k~~ia~~L~~~Gv~~IEvgsf~~-p~~~p~~-~d~~e~~~~l~~~~~~~~~~l~--~~~~~ie~A~~~g~~~v 96 (287)
T PRK05692 21 RFIPTADKIALIDRLSAAGLSYIEVASFVS-PKWVPQM-ADAAEVMAGIQRRPGVTYAALT--PNLKGLEAALAAGADEV 96 (287)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEeCCCcC-ccccccc-ccHHHHHHhhhccCCCeEEEEe--cCHHHHHHHHHcCCCEE
Confidence 448999999999999999999998763211 1000111 112455555543 234432211 36777888899999999
Q ss_pred ecCCCchHH-HHhccCCC--CCHHHHHHHHHHHHHcCCceeecEEeecC---C---CHHHHHHHHHHHhcCCCCCCeeee
Q 022946 199 NHNLDTSRE-FYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLG---E---AEEDRVGLLHTLATLPTHPESVPI 269 (289)
Q Consensus 199 ~i~let~~~-~~~~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i~Glg---e---t~ed~~~~l~~l~~l~~~~~~v~i 269 (289)
.+.+-+.+. ..++++.. ...+...+.++.+++.|+.+..++..-++ + +++.+.+.++.+.+. +.+.+.+
T Consensus 97 ~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--G~d~i~l 174 (287)
T PRK05692 97 AVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFAL--GCYEISL 174 (287)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHc--CCcEEEe
Confidence 988766533 22333322 23455777888999999988766654331 2 577888888888888 4565543
|
|
| >PLN02746 hydroxymethylglutaryl-CoA lyase | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.03 Score=50.06 Aligned_cols=144 Identities=10% Similarity=0.022 Sum_probs=88.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-cCceEEEeCCCCCHHHHHHHHHcCCCeE
Q 022946 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAY 198 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~~~~i~~~~g~l~~e~l~~L~~aG~~~v 198 (289)
..++.|+=++.++.+.+.|++.|-.+... .+-.-| ...+-.+.++.++. .+..+..- ..+.+.++...++|++.|
T Consensus 63 ~~~s~e~Ki~ia~~L~~~GV~~IEvGs~v-spk~vP-qmad~~ev~~~i~~~~~~~~~~l--~~n~~die~A~~~g~~~v 138 (347)
T PLN02746 63 NIVPTSVKVELIQRLVSSGLPVVEATSFV-SPKWVP-QLADAKDVMAAVRNLEGARFPVL--TPNLKGFEAAIAAGAKEV 138 (347)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEECCCc-Cccccc-ccccHHHHHHHHHhccCCceeEE--cCCHHHHHHHHHcCcCEE
Confidence 34799999999999999999999775421 110001 11122333333332 23332111 137888999999999999
Q ss_pred ecCCCchHHHHh-ccCCC--CCHHHHHHHHHHHHHcCCceeecE--Eeec-C---CCHHHHHHHHHHHhcCCCCCCeeee
Q 022946 199 NHNLDTSREFYS-KIITT--RSYDERLETLKHVREAGINVCSGG--IIGL-G---EAEEDRVGLLHTLATLPTHPESVPI 269 (289)
Q Consensus 199 ~i~let~~~~~~-~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~--i~Gl-g---et~ed~~~~l~~l~~l~~~~~~v~i 269 (289)
.+.+-+.+...+ +++.. ...+.+.+.++.+++.|+.+..++ .+|. . -+++.+.+.++.+.+. +.+.+.+
T Consensus 139 ~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~--Gad~I~l 216 (347)
T PLN02746 139 AVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDM--GCYEISL 216 (347)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHc--CCCEEEe
Confidence 988855543332 22221 235556678889999999887655 4453 1 2456777888888887 4555543
|
|
| >cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.067 Score=46.38 Aligned_cols=139 Identities=14% Similarity=0.079 Sum_probs=88.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc---CceEEE-----eCC--CCCHHHHHH
Q 022946 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM---GMEVCC-----TLG--MLEKHQAIE 189 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~---~~~i~~-----~~g--~l~~e~l~~ 189 (289)
..++.++.++.++.+.+.|++.|.++... . .+..+ +.++.+.+. +.++.. ..+ ..++..++.
T Consensus 15 ~~~s~e~k~~i~~~L~~~Gv~~IE~G~~~---~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 86 (273)
T cd07941 15 ISFSVEDKLRIARKLDELGVDYIEGGWPG---S-NPKDT----EFFARAKKLKLKHAKLAAFGSTRRAGVKAEEDPNLQA 86 (273)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEecCCc---C-CHHHH----HHHHHHHHcCCCCcEEEEEecccccCCCccchHHHHH
Confidence 34899999999999999999999874411 1 13333 333433322 222211 122 234556888
Q ss_pred HHHcCCCeEecCCCch-HHHHhccCCC--CCHHHHHHHHHHHHHcCCceeecEE---eecCCCHHHHHHHHHHHhcCCCC
Q 022946 190 LKKAGLTAYNHNLDTS-REFYSKIITT--RSYDERLETLKHVREAGINVCSGGI---IGLGEAEEDRVGLLHTLATLPTH 263 (289)
Q Consensus 190 L~~aG~~~v~i~let~-~~~~~~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i---~Glget~ed~~~~l~~l~~l~~~ 263 (289)
+.++|++.+.+.+-+. .-..+.++.. ..++...+.++.+++.|+.+..+.+ -|...+++.+.+.++.+.+. +
T Consensus 87 a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~--g 164 (273)
T cd07941 87 LLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAAEA--G 164 (273)
T ss_pred HHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHHhC--C
Confidence 9999999988877665 2233344332 3577888899999999998766433 23334577778888888877 4
Q ss_pred CCeee
Q 022946 264 PESVP 268 (289)
Q Consensus 264 ~~~v~ 268 (289)
++.+.
T Consensus 165 ~~~i~ 169 (273)
T cd07941 165 ADWLV 169 (273)
T ss_pred CCEEE
Confidence 56554
|
Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in |
| >PRK09389 (R)-citramalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.054 Score=50.90 Aligned_cols=138 Identities=16% Similarity=0.132 Sum_probs=91.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--CceEEEeCCCCCHHHHHHHHHcCCCe
Q 022946 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTA 197 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~i~~~~g~l~~e~l~~L~~aG~~~ 197 (289)
..++.++-++.++.+.+.|++.|-++. |...+..+ +.++.+.+. ..++..-. ....+.++...++|++.
T Consensus 19 ~~~s~e~K~~ia~~L~~~Gv~~IE~G~----p~~~~~d~----e~v~~i~~~~~~~~i~a~~-r~~~~di~~a~~~g~~~ 89 (488)
T PRK09389 19 VSLTPEEKLEIARKLDELGVDVIEAGS----AITSEGER----EAIKAVTDEGLNAEICSFA-RAVKVDIDAALECDVDS 89 (488)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEEeC----CcCCHHHH----HHHHHHHhcCCCcEEEeec-ccCHHHHHHHHhCCcCE
Confidence 348999999999999999999998754 11223333 333444332 23332222 22366688999999999
Q ss_pred EecCCCchHH-HHhccCCC--CCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeee
Q 022946 198 YNHNLDTSRE-FYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVP 268 (289)
Q Consensus 198 v~i~let~~~-~~~~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~ 268 (289)
|.+.+-+.+- ...+++.. ...+...+.++.+++.|+.+..+..-+...+++-+.+.++.+.+. +++.+.
T Consensus 90 v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~--Ga~~i~ 161 (488)
T PRK09389 90 VHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEA--GADRIC 161 (488)
T ss_pred EEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhC--CCCEEE
Confidence 9888877633 33333332 246777788888999999887776655555677777888888877 455544
|
|
| >cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.06 Score=46.71 Aligned_cols=144 Identities=13% Similarity=0.090 Sum_probs=91.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-cCceEEEeCCCCCHHHHHHHHHcCCCeE
Q 022946 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAY 198 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~~~~i~~~~g~l~~e~l~~L~~aG~~~v 198 (289)
..++.|+-++.++.+.+.|++.|-++....+... |. +.+..++++.+.. .+.++..-. .+.+.++...++|++.+
T Consensus 15 ~~~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~-p~-~~d~~~~~~~l~~~~~~~~~~~~--~~~~dv~~A~~~g~~~i 90 (274)
T cd07938 15 TFIPTEDKIELIDALSAAGLRRIEVTSFVSPKWV-PQ-MADAEEVLAGLPRRPGVRYSALV--PNLRGAERALAAGVDEV 90 (274)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEeCCCCCcccc-cc-cCCHHHHHhhcccCCCCEEEEEC--CCHHHHHHHHHcCcCEE
Confidence 3479999999999999999999988642111100 11 1111133444432 244443222 45777999999999998
Q ss_pred ecCCCchH-HHHhccCCC--CCHHHHHHHHHHHHHcCCceeecEEeecC------CCHHHHHHHHHHHhcCCCCCCeeee
Q 022946 199 NHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLG------EAEEDRVGLLHTLATLPTHPESVPI 269 (289)
Q Consensus 199 ~i~let~~-~~~~~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i~Glg------et~ed~~~~l~~l~~l~~~~~~v~i 269 (289)
.+.+-+.+ -...+++.. ...+...+.++.+++.|+.+..++..-++ -+.+.+.+.++.+.++ +.+.+.+
T Consensus 91 ~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~--Ga~~i~l 168 (274)
T cd07938 91 AVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLDL--GCDEISL 168 (274)
T ss_pred EEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHc--CCCEEEE
Confidence 88776663 333444433 24677888899999999987766654331 2567778888888887 4555543
|
3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy |
| >PRK00915 2-isopropylmalate synthase; Validated | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.035 Score=52.55 Aligned_cols=139 Identities=14% Similarity=0.109 Sum_probs=86.8
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHH----HHHHHHcCCC
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQ----AIELKKAGLT 196 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~----l~~L~~aG~~ 196 (289)
.++.++-++.++.+.+.|++.|.++. |...+..++.+..+.+.. .+.++..-.- ...+. ++.++++|.+
T Consensus 22 ~~s~e~K~~ia~~L~~~Gv~~IE~G~----p~~s~~d~~~v~~i~~~~--~~~~i~a~~r-~~~~did~a~~a~~~~~~~ 94 (513)
T PRK00915 22 SLTVEEKLQIAKQLERLGVDVIEAGF----PASSPGDFEAVKRIARTV--KNSTVCGLAR-AVKKDIDAAAEALKPAEAP 94 (513)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcC----CCCChHHHHHHHHHHhhC--CCCEEEEEcc-CCHHHHHHHHHHhhcCCCC
Confidence 48999999999999999999998753 122233444443332222 2333322111 11233 3445578999
Q ss_pred eEecCCCch-HHHHhccCCC--CCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeee
Q 022946 197 AYNHNLDTS-REFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVP 268 (289)
Q Consensus 197 ~v~i~let~-~~~~~~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~ 268 (289)
+|.+.+-+. -....+++.. ...+...+.++.+++.|+.+..+..-+..-+.+.+.+.++.+.+. +++.+.
T Consensus 95 ~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~~~~--Ga~~i~ 167 (513)
T PRK00915 95 RIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAEDATRTDLDFLCRVVEAAIDA--GATTIN 167 (513)
T ss_pred EEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHc--CCCEEE
Confidence 898888776 3333444332 235666788899999999887666555545567788888888877 455543
|
|
| >cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.16 Score=44.20 Aligned_cols=142 Identities=13% Similarity=0.115 Sum_probs=91.0
Q ss_pred CCCCHHHHHHHHHHH-HHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc----CceEEEeCCCCCHHHHHHHHHcC
Q 022946 120 KLMTKDAVMQAAQKA-KEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM----GMEVCCTLGMLEKHQAIELKKAG 194 (289)
Q Consensus 120 ~~~~~eei~~~~~~~-~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~----~~~i~~~~g~l~~e~l~~L~~aG 194 (289)
..++.++-++.++.+ ...|++.|-++. +.. .+..++.+.++.+..... ++.+..-. .....++..+++|
T Consensus 14 ~~~s~e~K~~i~~~L~~~~Gv~~IEvg~---~~~-s~~e~~av~~~~~~~~~~~~~~~~~~~a~~--~~~~~~~~A~~~g 87 (280)
T cd07945 14 VSFSPSEKLNIAKILLQELKVDRIEVAS---ARV-SEGEFEAVQKIIDWAAEEGLLDRIEVLGFV--DGDKSVDWIKSAG 87 (280)
T ss_pred CccCHHHHHHHHHHHHHHhCCCEEEecC---CCC-CHHHHHHHHHHHHHhhhhccccCcEEEEec--CcHHHHHHHHHCC
Confidence 347999999999986 567999998764 111 233333344443322111 23332221 2355688899999
Q ss_pred CCeEecCCCch-HHHHhccCC--CCCHHHHHHHHHHHHHcCCceeecEEe-e--cCCCHHHHHHHHHHHhcCCCCCCeee
Q 022946 195 LTAYNHNLDTS-REFYSKIIT--TRSYDERLETLKHVREAGINVCSGGII-G--LGEAEEDRVGLLHTLATLPTHPESVP 268 (289)
Q Consensus 195 ~~~v~i~let~-~~~~~~i~~--~~~~~~~~~~i~~~~~~Gi~v~~~~i~-G--lget~ed~~~~l~~l~~l~~~~~~v~ 268 (289)
++.|.+.+-++ ....+++++ ....+.+.+.++.+++.|+.+..++.- | +.-+++.+.+.++.+.++ +.+.+.
T Consensus 88 ~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~--G~~~i~ 165 (280)
T cd07945 88 AKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSDL--PIKRIM 165 (280)
T ss_pred CCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHHc--CCCEEE
Confidence 99999888666 333444443 235677888899999999987766653 1 124678888888888888 455554
Q ss_pred e
Q 022946 269 I 269 (289)
Q Consensus 269 i 269 (289)
+
T Consensus 166 l 166 (280)
T cd07945 166 L 166 (280)
T ss_pred e
Confidence 3
|
Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con |
| >cd00739 DHPS DHPS subgroup of Pterin binding enzymes | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.32 Score=41.73 Aligned_cols=137 Identities=15% Similarity=0.221 Sum_probs=81.1
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCC----CchhHHHHHHHHHHHHhc-CceEEEeCCCCCHHHHHHHHHcCC
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG----RKTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGL 195 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~g----e~~~~~~l~e~i~~ik~~-~~~i~~~~g~l~~e~l~~L~~aG~ 195 (289)
..+.+++++.+....+.|++-|-+++....++. +....+++..+++.+++. ++.+ +..+.+.+.+++-.++|.
T Consensus 20 ~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~pl--SIDT~~~~v~e~al~~G~ 97 (257)
T cd00739 20 FLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVLI--SVDTFRAEVARAALEAGA 97 (257)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcE--EEeCCCHHHHHHHHHhCC
Confidence 368999999999999999998888654333322 224556777778877743 4433 334456666666556666
Q ss_pred CeEe-cCCCch-HHHHh---ccC-------CC---CC----------HH----HHHHHHHHHHHcCC---ceeecEEeec
Q 022946 196 TAYN-HNLDTS-REFYS---KII-------TT---RS----------YD----ERLETLKHVREAGI---NVCSGGIIGL 243 (289)
Q Consensus 196 ~~v~-i~let~-~~~~~---~i~-------~~---~~----------~~----~~~~~i~~~~~~Gi---~v~~~~i~Gl 243 (289)
+.|+ ++.+.. +++++ +.. .. .+ .+ ...+.++.+.+.|+ ++..+-.+|+
T Consensus 98 ~iINdisg~~~~~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~Ii~DPg~gf 177 (257)
T cd00739 98 DIINDVSGGSDDPAMLEVAAEYGAPLVLMHMRGTPKTMQENPYYEDVVDEVLSFLEARLEAAESAGVARNRIILDPGIGF 177 (257)
T ss_pred CEEEeCCCCCCChHHHHHHHHcCCCEEEECCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEEecCCCc
Confidence 6655 444332 33322 110 00 00 12 23455666888998 4667767788
Q ss_pred CCCHHHHHHHHHHHhc
Q 022946 244 GEAEEDRVGLLHTLAT 259 (289)
Q Consensus 244 get~ed~~~~l~~l~~ 259 (289)
+.+.++-.++++.+..
T Consensus 178 ~ks~~~~~~~l~~i~~ 193 (257)
T cd00739 178 GKTPEHNLELLRRLDE 193 (257)
T ss_pred ccCHHHHHHHHHHHHH
Confidence 7776555555555443
|
DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. |
| >cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.21 Score=43.38 Aligned_cols=135 Identities=16% Similarity=0.127 Sum_probs=85.1
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCC-----CCCCchhHHHHHHHHHHHHhcCceEEEe----CC------CCCHH
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRD-----TIGRKTNFNQILEYVKDIRDMGMEVCCT----LG------MLEKH 185 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~-----~~ge~~~~~~l~e~i~~ik~~~~~i~~~----~g------~l~~e 185 (289)
.++.++.++.+..+.+.|++.|-++++... ..++ ..++.+.++.+...+..+..... .| ...++
T Consensus 17 ~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~-~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~ 95 (275)
T cd07937 17 RMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNE-DPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVEL 95 (275)
T ss_pred eccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCC-CHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHH
Confidence 378999999999999999999987653210 0121 23333333333222222222111 11 13567
Q ss_pred HHHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEe--ecCCCHHHHHHHHHHHhcCCCC
Q 022946 186 QAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGII--GLGEAEEDRVGLLHTLATLPTH 263 (289)
Q Consensus 186 ~l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~--Glget~ed~~~~l~~l~~l~~~ 263 (289)
.++...++|++.|.+..-. ...+...+.++.+++.|+.+...+.. +..-+++.+.+.++.+.+. +
T Consensus 96 di~~~~~~g~~~iri~~~~-----------~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~--G 162 (275)
T cd07937 96 FVEKAAKNGIDIFRIFDAL-----------NDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDM--G 162 (275)
T ss_pred HHHHHHHcCCCEEEEeecC-----------ChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHc--C
Confidence 7888899999998876532 23678888999999999877665543 2256678888888888887 4
Q ss_pred CCeeee
Q 022946 264 PESVPI 269 (289)
Q Consensus 264 ~~~v~i 269 (289)
++.+.+
T Consensus 163 a~~i~l 168 (275)
T cd07937 163 ADSICI 168 (275)
T ss_pred CCEEEE
Confidence 555543
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex |
| >PRK08091 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.13 Score=43.11 Aligned_cols=127 Identities=11% Similarity=-0.084 Sum_probs=78.7
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE-ecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCC-CCHHHHHHHHHcCCCeEec
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM-LEKHQAIELKKAGLTAYNH 200 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i-~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~-l~~e~l~~L~~aG~~~v~i 200 (289)
+.-.+.++++.+.+.|++.+++ ..++. +...-..-..+++.++ +...+++ +.-. -..+.++.+.++|.+.|.+
T Consensus 23 d~~~l~~el~~l~~~g~d~lHiDVMDG~-FVPNitfGp~~i~~i~--~~~~~Dv--HLMv~~P~~~i~~~~~aGad~It~ 97 (228)
T PRK08091 23 NWLKFNETLTTLSENQLRLLHFDIADGQ-FSPFFTVGAIAIKQFP--THCFKDV--HLMVRDQFEVAKACVAAGADIVTL 97 (228)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeccCCC-cCCccccCHHHHHHhC--CCCCEEE--EeccCCHHHHHHHHHHhCCCEEEE
Confidence 4567888888999999999888 22221 1111112244554443 1222333 3222 2466789999999999999
Q ss_pred CCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeecccee
Q 022946 201 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 274 (289)
Q Consensus 201 ~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p 274 (289)
..|+. .+..+.++.+++.|+.+.+++.+..+-..+++...+.. .+.|-++.-.|
T Consensus 98 H~Ea~-------------~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~-------vD~VLiMtV~P 151 (228)
T PRK08091 98 QVEQT-------------HDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQ-------IDLIQILTLDP 151 (228)
T ss_pred cccCc-------------ccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhh-------cCEEEEEEECC
Confidence 99863 22467788888899866777777665555555555442 35565655544
|
|
| >PRK11613 folP dihydropteroate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.86 Score=39.62 Aligned_cols=146 Identities=18% Similarity=0.162 Sum_probs=88.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC----chhHHHHHHHHHHHHh-cCceEEEeCCCCCHHHHHHHHHcCCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR----KTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge----~~~~~~l~e~i~~ik~-~~~~i~~~~g~l~~e~l~~L~~aG~~ 196 (289)
.+++.+++.+..+.+.|++-|-++|....++.+ ...++++...++.+++ .++. ++..+...+++++-.++|++
T Consensus 35 ~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~~--ISIDT~~~~va~~AL~~Gad 112 (282)
T PRK11613 35 NSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEVW--ISVDTSKPEVIRESAKAGAH 112 (282)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCe--EEEECCCHHHHHHHHHcCCC
Confidence 589999999999999999988887643333322 2456678888888873 3443 34455667777777777777
Q ss_pred eEe-c-CCCc-h-HHHHhccC--------C--C------CC--------HHHHHHHHHHHHHcCC---ceeecEEeecCC
Q 022946 197 AYN-H-NLDT-S-REFYSKII--------T--T------RS--------YDERLETLKHVREAGI---NVCSGGIIGLGE 245 (289)
Q Consensus 197 ~v~-i-~let-~-~~~~~~i~--------~--~------~~--------~~~~~~~i~~~~~~Gi---~v~~~~i~Glge 245 (289)
.|+ + ++.. - -++..+.. . + .. .+...+.++.+.+.|+ ++..+--+|++.
T Consensus 113 iINDI~g~~d~~~~~~~a~~~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~GI~~~~IilDPGiGF~k 192 (282)
T PRK11613 113 IINDIRSLSEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAAGIAKEKLLLDPGFGFGK 192 (282)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCEEEEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCcCC
Confidence 664 2 3321 1 11111110 0 0 01 1333466677888999 465655578888
Q ss_pred CHHHHHHHHHHHh---cCCCCCCeeeec
Q 022946 246 AEEDRVGLLHTLA---TLPTHPESVPIN 270 (289)
Q Consensus 246 t~ed~~~~l~~l~---~l~~~~~~v~i~ 270 (289)
+.++-.+++..+. .++ .|-.++++
T Consensus 193 ~~~~n~~ll~~l~~l~~lg-~Pilvg~S 219 (282)
T PRK11613 193 NLSHNYQLLARLAEFHHFN-LPLLVGMS 219 (282)
T ss_pred CHHHHHHHHHHHHHHHhCC-CCEEEEec
Confidence 8876666655554 443 24445554
|
|
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.45 Score=44.23 Aligned_cols=136 Identities=13% Similarity=0.088 Sum_probs=79.6
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCC----CCchhHHHHHHHHHHHHhcCceEEEe----CCC------CCHHH
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI----GRKTNFNQILEYVKDIRDMGMEVCCT----LGM------LEKHQ 186 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~----ge~~~~~~l~e~i~~ik~~~~~i~~~----~g~------l~~e~ 186 (289)
.++.++.++.++.+.+.|+..+-+.||..++. -.+..++.+..+-+.++...+..... .|. +..+.
T Consensus 22 ~~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~ 101 (448)
T PRK12331 22 RMTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESF 101 (448)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHH
Confidence 48999999999999999999998865432221 11223333333322222222221111 232 34566
Q ss_pred HHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEe--ecCCCHHHHHHHHHHHhcCCCCC
Q 022946 187 AIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGII--GLGEAEEDRVGLLHTLATLPTHP 264 (289)
Q Consensus 187 l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~--Glget~ed~~~~l~~l~~l~~~~ 264 (289)
+++..++|++.+.+..-..+ .....+.++.+++.|+.+...+-+ +--.+.+-+.+.++.+.+. +.
T Consensus 102 v~~A~~~Gvd~irif~~lnd-----------~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~--Ga 168 (448)
T PRK12331 102 VQKSVENGIDIIRIFDALND-----------VRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEM--GA 168 (448)
T ss_pred HHHHHHCCCCEEEEEEecCc-----------HHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHc--CC
Confidence 78888899998877653321 123566788888888765443333 2244667777777777777 45
Q ss_pred Ceeee
Q 022946 265 ESVPI 269 (289)
Q Consensus 265 ~~v~i 269 (289)
+.+.+
T Consensus 169 d~I~i 173 (448)
T PRK12331 169 DSICI 173 (448)
T ss_pred CEEEE
Confidence 55443
|
|
| >TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.45 Score=45.26 Aligned_cols=143 Identities=11% Similarity=0.014 Sum_probs=90.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEe-----CCC--CCHHHHHHHHH
Q 022946 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCT-----LGM--LEKHQAIELKK 192 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~-----~g~--l~~e~l~~L~~ 192 (289)
..++.++-++.++.+.+.|++.|-.+. |...|..++.+..+.+. .-.+.++..- .+. ..+..++.+.+
T Consensus 18 ~~~s~eeKl~Ia~~L~~~GVd~IE~G~----p~~s~~d~~~v~~i~~~-~~~~~~i~~~~r~~r~~~~~~~d~~~ea~~~ 92 (526)
T TIGR00977 18 VSFSLEDKIRIAERLDDLGIHYIEGGW----PGANPKDVQFFWQLKEM-NFKNAKIVAFCSTRRPHKKVEEDKMLQALIK 92 (526)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC----CCCChHHHHHHHHHHHh-CCCCcEEEEEeeecCCCCCCchHHHHHHHhc
Confidence 348999999999999999999997742 22234455444443321 1012333221 121 23556899999
Q ss_pred cCCCeEecCCCch-HHHHhccCCC--CCHHHHHHHHHHHHHcCCceeecEE---eecCCCHHHHHHHHHHHhcCCCCCCe
Q 022946 193 AGLTAYNHNLDTS-REFYSKIITT--RSYDERLETLKHVREAGINVCSGGI---IGLGEAEEDRVGLLHTLATLPTHPES 266 (289)
Q Consensus 193 aG~~~v~i~let~-~~~~~~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i---~Glget~ed~~~~l~~l~~l~~~~~~ 266 (289)
+|.+.|.+.+-+. -....+++.. ...+...+.++.+++.|..|..... -|.--+++.+.+.++.+.+. +++.
T Consensus 93 ~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~~a--Gad~ 170 (526)
T TIGR00977 93 AETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGYKANPEYALATLATAQQA--GADW 170 (526)
T ss_pred CCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecccCCHHHHHHHHHHHHhC--CCCe
Confidence 9999999887776 3333344332 2456667778899999998754332 34445677888888888877 4555
Q ss_pred eee
Q 022946 267 VPI 269 (289)
Q Consensus 267 v~i 269 (289)
+.+
T Consensus 171 i~i 173 (526)
T TIGR00977 171 LVL 173 (526)
T ss_pred EEE
Confidence 543
|
This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases. |
| >PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.46 Score=45.18 Aligned_cols=139 Identities=14% Similarity=0.101 Sum_probs=88.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc---CceEEE-----eCCC--CCHHHHHH
Q 022946 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM---GMEVCC-----TLGM--LEKHQAIE 189 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~---~~~i~~-----~~g~--l~~e~l~~ 189 (289)
..++.++.++.++.+.+.|++.|.++.. ...+..++ .++.+.+. +.++.. ..+. .++..++.
T Consensus 22 ~~~s~e~Kl~ia~~L~~~Gvd~IEvG~p----~as~~d~~----~~~~i~~~~l~~~~i~~~~~~~~~~i~~~~d~~~e~ 93 (524)
T PRK12344 22 ISFSVEDKLRIARKLDELGVDYIEGGWP----GSNPKDTE----FFKRAKELKLKHAKLAAFGSTRRAGVSAEEDPNLQA 93 (524)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEcCC----cCChhHHH----HHHHHHHhCCCCcEEEEEeeccccCCCcccHHHHHH
Confidence 4489999999999999999999987431 11233332 33333321 233321 1122 24567899
Q ss_pred HHHcCCCeEecCCCchH-HHHhccCC--CCCHHHHHHHHHHHHHcCCceeecEE---eecCCCHHHHHHHHHHHhcCCCC
Q 022946 190 LKKAGLTAYNHNLDTSR-EFYSKIIT--TRSYDERLETLKHVREAGINVCSGGI---IGLGEAEEDRVGLLHTLATLPTH 263 (289)
Q Consensus 190 L~~aG~~~v~i~let~~-~~~~~i~~--~~~~~~~~~~i~~~~~~Gi~v~~~~i---~Glget~ed~~~~l~~l~~l~~~ 263 (289)
+.++|++.|.+.+-+.+ -...+++. ....+...+.++.+++.|..+..+.. -+.-.+.+-+.+.++.+.+. +
T Consensus 94 ~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~~--G 171 (524)
T PRK12344 94 LLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDGYKANPEYALATLKAAAEA--G 171 (524)
T ss_pred HHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccccccccccCCHHHHHHHHHHHHhC--C
Confidence 99999999998877763 33344433 23567777888899999998765433 23334566677777777777 4
Q ss_pred CCeee
Q 022946 264 PESVP 268 (289)
Q Consensus 264 ~~~v~ 268 (289)
++.+.
T Consensus 172 ad~i~ 176 (524)
T PRK12344 172 ADWVV 176 (524)
T ss_pred CCeEE
Confidence 56554
|
|
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.44 Score=44.75 Aligned_cols=134 Identities=12% Similarity=0.101 Sum_probs=77.8
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCC-----CCCchhHHHHHHHHHHHHhcCceEEEe----CCC--CC----HH
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDT-----IGRKTNFNQILEYVKDIRDMGMEVCCT----LGM--LE----KH 185 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~-----~ge~~~~~~l~e~i~~ik~~~~~i~~~----~g~--l~----~e 185 (289)
.++.++.+..++.+.+.|+..+-+.||..+. .+| ..++++..+-+.+++..+..... .|+ .. +.
T Consensus 23 r~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~E-dpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~ 101 (499)
T PRK12330 23 RMAMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNE-DPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDR 101 (499)
T ss_pred cCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCC-CHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHH
Confidence 3899999999999999999999886554333 222 23444444444443333333222 222 23 44
Q ss_pred HHHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecE--EeecCCCHHHHHHHHHHHhcCCCC
Q 022946 186 QAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGG--IIGLGEAEEDRVGLLHTLATLPTH 263 (289)
Q Consensus 186 ~l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~--i~Glget~ed~~~~l~~l~~l~~~ 263 (289)
.++...++|+|.+.+..-. ...+....+++.++++|..+...+ ..+...|.+.+.+.++.+.++ +
T Consensus 102 fv~~a~~~Gidi~RIfd~l-----------ndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~--G 168 (499)
T PRK12330 102 FVEKSAENGMDVFRVFDAL-----------NDPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDM--G 168 (499)
T ss_pred HHHHHHHcCCCEEEEEecC-----------ChHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHc--C
Confidence 5666677799987765422 233555666666666666543333 334456666666666666666 3
Q ss_pred CCeee
Q 022946 264 PESVP 268 (289)
Q Consensus 264 ~~~v~ 268 (289)
.+.+.
T Consensus 169 ad~I~ 173 (499)
T PRK12330 169 ADSIC 173 (499)
T ss_pred CCEEE
Confidence 44443
|
|
| >TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.31 Score=45.96 Aligned_cols=139 Identities=12% Similarity=0.070 Sum_probs=83.9
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHH----HHHHcCCC
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAI----ELKKAGLT 196 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~----~L~~aG~~ 196 (289)
.++.++-++.++.+.+.|++.|-++. |...+..++.+..+.+..+ +.++..-. ....+.++ .++.++.+
T Consensus 19 ~~s~e~K~~ia~~L~~~GV~~IEvG~----p~~s~~d~e~v~~i~~~~~--~~~i~al~-r~~~~did~a~~al~~~~~~ 91 (494)
T TIGR00973 19 SLTVEEKLQIALALERLGVDIIEAGF----PVSSPGDFEAVQRIARTVK--NPRVCGLA-RCVEKDIDAAAEALKPAEKF 91 (494)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEEC----CCCCHHHHHHHHHHHHhCC--CCEEEEEc-CCCHHhHHHHHHhccccCCC
Confidence 38999999999999999999997643 2222334444433322221 23333221 12233344 44455778
Q ss_pred eEecCCCch-HHHHhccCCC--CCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeee
Q 022946 197 AYNHNLDTS-REFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVP 268 (289)
Q Consensus 197 ~v~i~let~-~~~~~~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~ 268 (289)
+|.+.+-+. --...+++.. ...+...+.++.+++.|..+..+..-+..-+++.+.+.++.+.+. +++.+.
T Consensus 92 ~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~--Ga~~i~ 164 (494)
T TIGR00973 92 RIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCEDAGRTEIPFLARIVEAAINA--GATTIN 164 (494)
T ss_pred EEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCCHHHHHHHHHHHHHc--CCCEEE
Confidence 888877666 3333344332 234556678888999998876666555555677788888888777 355443
|
A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes. |
| >PLN03228 methylthioalkylmalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.67 Score=43.70 Aligned_cols=143 Identities=15% Similarity=0.114 Sum_probs=79.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-----cCc-eEEEeCCCCCHHHHHHHHH-
Q 022946 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-----MGM-EVCCTLGMLEKHQAIELKK- 192 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-----~~~-~i~~~~g~l~~e~l~~L~~- 192 (289)
..++.++-++.++.+.+.|++.|.++. |...+..++.+..+.+.... .+. ......+....+.++.-.+
T Consensus 101 v~fs~eeKi~Ia~~L~~~GVd~IEvG~----Pa~s~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~dId~a~~a 176 (503)
T PLN03228 101 GSLTPPQKLEIARQLAKLRVDIMEVGF----PGSSEEEFEAVKTIAKTVGNEVDEETGYVPVICGIARCKKRDIEAAWEA 176 (503)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC----CCCCHHHHHHHHHHHHhcccccccccccceEEeeecccCHhhHHHHHHh
Confidence 348999999999999999999887754 22223333333222222111 011 1111222233334444444
Q ss_pred ---cCCCeEecCCCchHH-HHhccCCC--CCHHHHHHHHHHHHHcCCc-eeecEEeecCCCHHHHHHHHHHHhcCCCCCC
Q 022946 193 ---AGLTAYNHNLDTSRE-FYSKIITT--RSYDERLETLKHVREAGIN-VCSGGIIGLGEAEEDRVGLLHTLATLPTHPE 265 (289)
Q Consensus 193 ---aG~~~v~i~let~~~-~~~~i~~~--~~~~~~~~~i~~~~~~Gi~-v~~~~i~Glget~ed~~~~l~~l~~l~~~~~ 265 (289)
+|.++|.+.+-+.+. ...+++.. ...+...+.++.+++.|+. +..+.-.+.--+.+.+.+.++.+.+. +++
T Consensus 177 ~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~Rtd~efl~~~~~~a~~~--Gad 254 (503)
T PLN03228 177 LKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGGRSDKEFLCKILGEAIKA--GAT 254 (503)
T ss_pred hcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEeccccccccCHHHHHHHHHHHHhc--CCC
Confidence 477888877766632 23344332 3467777888899999985 43333222222345567777777777 455
Q ss_pred eee
Q 022946 266 SVP 268 (289)
Q Consensus 266 ~v~ 268 (289)
.+.
T Consensus 255 ~I~ 257 (503)
T PLN03228 255 SVG 257 (503)
T ss_pred EEE
Confidence 543
|
|
| >COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.62 Score=42.78 Aligned_cols=133 Identities=14% Similarity=0.165 Sum_probs=86.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEe-CC--CCCHHHHHHHHHcCC
Q 022946 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCT-LG--MLEKHQAIELKKAGL 195 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~-~g--~l~~e~l~~L~~aG~ 195 (289)
-.++.|+-++.++.+.+.|++.|..+... .. +.-.+.++.+. ..+..+.+. .+ ....+.++.+.++|+
T Consensus 19 ~~~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~----~s----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~~ 90 (409)
T COG0119 19 VSFSVEEKIRIAKALDDLGVDYIEAGFPV----AS----PGDFEFVRAIAEKAGLFICALIAALARAIKRDIEALLEAGV 90 (409)
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEEeCCc----CC----hhhHHHHHHHHHhcCcccchhhhhhHHhHHhhHHHHHhCCC
Confidence 34899999999999999999998765421 11 22233333333 223211111 11 133457899999999
Q ss_pred CeEecCCCchHH-HHhccCC--CCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcC
Q 022946 196 TAYNHNLDTSRE-FYSKIIT--TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATL 260 (289)
Q Consensus 196 ~~v~i~let~~~-~~~~i~~--~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l 260 (289)
+.+.+-+.+.+- ...+++. ....+...+.++.+++.|+.+..+..-...-+++.+.+.++.+...
T Consensus 91 ~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~~Ed~~rt~~~~l~~~~~~~~~~ 158 (409)
T COG0119 91 DRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFSAEDATRTDPEFLAEVVKAAIEA 158 (409)
T ss_pred CEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCHHHHHHHHHHHHHc
Confidence 999988877733 3333332 2356777888999999998877555554566777888888887765
|
|
| >PRK14041 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.54 Score=43.90 Aligned_cols=130 Identities=12% Similarity=0.086 Sum_probs=77.2
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCC-----CCCchhHHHHHHHHHHHHhc--CceEEE--e----CCC--CC--
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDT-----IGRKTNFNQILEYVKDIRDM--GMEVCC--T----LGM--LE-- 183 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~-----~ge~~~~~~l~e~i~~ik~~--~~~i~~--~----~g~--l~-- 183 (289)
.++.++.+..++.+.+.|+..+-+.|+.... .. +.. .+.++.+++. +..+.. . .|. ..
T Consensus 21 ~~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~-e~p----~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dD 95 (467)
T PRK14041 21 RMRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLN-ENP----WERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADD 95 (467)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccC-CCH----HHHHHHHHHhCCCCEEEEEeccccccCcccccch
Confidence 4899999999999999999999885542211 12 122 3333333321 233211 1 122 12
Q ss_pred --HHHHHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEe--ecCCCHHHHHHHHHHHhc
Q 022946 184 --KHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGII--GLGEAEEDRVGLLHTLAT 259 (289)
Q Consensus 184 --~e~l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~--Glget~ed~~~~l~~l~~ 259 (289)
+..++...++|++.+.+..-.. ..+....+++.+++.|..+...+-+ +-..+.+.+.+.++.+.+
T Consensus 96 vv~~fv~~A~~~Gvd~irif~~ln-----------d~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~ 164 (467)
T PRK14041 96 VVELFVKKVAEYGLDIIRIFDALN-----------DIRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVD 164 (467)
T ss_pred hhHHHHHHHHHCCcCEEEEEEeCC-----------HHHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHH
Confidence 2336777788999887655332 1345677778888888766544433 224566777777777777
Q ss_pred CCCCCCeee
Q 022946 260 LPTHPESVP 268 (289)
Q Consensus 260 l~~~~~~v~ 268 (289)
. +.+.+.
T Consensus 165 ~--Gad~I~ 171 (467)
T PRK14041 165 M--GVDSIC 171 (467)
T ss_pred c--CCCEEE
Confidence 7 355544
|
|
| >PRK14040 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.98 Score=43.58 Aligned_cols=135 Identities=16% Similarity=0.127 Sum_probs=81.7
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCC-----CCCchhHHHHHHHHHHHHhcCceEEEe----CCC------CCHH
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDT-----IGRKTNFNQILEYVKDIRDMGMEVCCT----LGM------LEKH 185 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~-----~ge~~~~~~l~e~i~~ik~~~~~i~~~----~g~------l~~e 185 (289)
.++.++.+..+..+.+.|+..+-+.||..+. .++ ..++.+..+.+.+.+..+..... .|+ .-.+
T Consensus 23 r~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e-~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~ 101 (593)
T PRK14040 23 RLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGE-DPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVER 101 (593)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCC-CHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHH
Confidence 4789999999999999999999886542222 232 23344444433333333322222 122 1234
Q ss_pred HHHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEE--eecCCCHHHHHHHHHHHhcCCCC
Q 022946 186 QAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGI--IGLGEAEEDRVGLLHTLATLPTH 263 (289)
Q Consensus 186 ~l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i--~Glget~ed~~~~l~~l~~l~~~ 263 (289)
.++...++|++.+.+.. +. ...+....+++.+++.|..+...+- ..-.+|.+.+.+.++.+.+. +
T Consensus 102 ~v~~a~~~Gid~~rifd-~l----------nd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~--G 168 (593)
T PRK14040 102 FVERAVKNGMDVFRVFD-AM----------NDPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDM--G 168 (593)
T ss_pred HHHHHHhcCCCEEEEee-eC----------CcHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHc--C
Confidence 47778888999888763 11 2245677788888888886433332 23356777777777777777 4
Q ss_pred CCeeee
Q 022946 264 PESVPI 269 (289)
Q Consensus 264 ~~~v~i 269 (289)
.+.+.+
T Consensus 169 ad~i~i 174 (593)
T PRK14040 169 VDSLCI 174 (593)
T ss_pred CCEEEE
Confidence 555543
|
|
| >PRK08005 epimerase; Validated | Back alignment and domain information |
|---|
Probab=95.19 E-value=1.2 Score=37.01 Aligned_cols=97 Identities=11% Similarity=-0.035 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE-ecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCC-CCHHHHHHHHHcCCCeEec
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM-LEKHQAIELKKAGLTAYNH 200 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i-~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~-l~~e~l~~L~~aG~~~v~i 200 (289)
+...+.++++++.+.|++.+++ ..++. +...-..-..+++.++......+++ +.-. -++..++.+.++|.+.|.+
T Consensus 11 d~~~l~~el~~l~~~g~d~lHiDvMDG~-FVPN~tfG~~~i~~l~~~t~~~~Dv--HLMv~~P~~~i~~~~~~gad~It~ 87 (210)
T PRK08005 11 DPLRYAEALTALHDAPLGSLHLDIEDTS-FINNITFGMKTIQAVAQQTRHPLSF--HLMVSSPQRWLPWLAAIRPGWIFI 87 (210)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeccCCC-cCCccccCHHHHHHHHhcCCCCeEE--EeccCCHHHHHHHHHHhCCCEEEE
Confidence 4567788888898999999887 22222 2111112245555555432223333 3222 2456789999999999999
Q ss_pred CCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCce
Q 022946 201 NLDTSREFYSKIITTRSYDERLETLKHVREAGINV 235 (289)
Q Consensus 201 ~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v 235 (289)
..|+. ....+.++.+|+.|+++
T Consensus 88 H~Ea~-------------~~~~~~l~~Ik~~G~k~ 109 (210)
T PRK08005 88 HAESV-------------QNPSEILADIRAIGAKA 109 (210)
T ss_pred cccCc-------------cCHHHHHHHHHHcCCcE
Confidence 99863 12345677777778764
|
|
| >TIGR01496 DHPS dihydropteroate synthase | Back alignment and domain information |
|---|
Probab=95.11 E-value=1.9 Score=37.02 Aligned_cols=139 Identities=17% Similarity=0.242 Sum_probs=76.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC----chhHHHHHHHHHHHHhc-CceEEEeCCCCCHHHHHHHHHcC
Q 022946 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR----KTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAG 194 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge----~~~~~~l~e~i~~ik~~-~~~i~~~~g~l~~e~l~~L~~aG 194 (289)
...+++++++.++...+.|++-|-+++....+... ....+++..+++.+++. ++.+. ....+.+.+++-.++|
T Consensus 18 ~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~pls--iDT~~~~vi~~al~~G 95 (257)
T TIGR01496 18 RFLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPIS--VDTYRAEVARAALEAG 95 (257)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEE--EeCCCHHHHHHHHHcC
Confidence 33688999999999999999988886533323211 12445677777777643 55442 2334455554444455
Q ss_pred CCeEe-cCCCc---hHHHHhccC-----------C---------CCCHHH----HHHHHHHHHHcCCc---eeecEEeec
Q 022946 195 LTAYN-HNLDT---SREFYSKII-----------T---------TRSYDE----RLETLKHVREAGIN---VCSGGIIGL 243 (289)
Q Consensus 195 ~~~v~-i~let---~~~~~~~i~-----------~---------~~~~~~----~~~~i~~~~~~Gi~---v~~~~i~Gl 243 (289)
.+.|+ ++.+. .-++.++.. + ....++ ..+.++.+.+.|++ +..+-.+|+
T Consensus 96 ~~iINsis~~~~~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~iilDPg~gf 175 (257)
T TIGR01496 96 ADIINDVSGGQDPAMLEVAAEYGVPLVLMHMRGTPRTMQENPHYEDVVEEVLRFLEARAEELVAAGVAAERIILDPGIGF 175 (257)
T ss_pred CCEEEECCCCCCchhHHHHHHcCCcEEEEeCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEEECCCCc
Confidence 55544 22221 101111100 0 001222 34456667889994 555555677
Q ss_pred CCCHHHHHHHHHHHhcC
Q 022946 244 GEAEEDRVGLLHTLATL 260 (289)
Q Consensus 244 get~ed~~~~l~~l~~l 260 (289)
+.+.++-.++++.++.+
T Consensus 176 ~ks~~~~~~~l~~i~~l 192 (257)
T TIGR01496 176 GKTPEHNLELLKHLEEF 192 (257)
T ss_pred ccCHHHHHHHHHHHHHH
Confidence 66777666666666554
|
This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284. |
| >TIGR01108 oadA oxaloacetate decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=95.10 E-value=1.1 Score=43.24 Aligned_cols=134 Identities=10% Similarity=0.109 Sum_probs=79.0
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCC-----CCCchhHHHHHHHHHHHHhcCceEEEe----CCC------CCHH
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDT-----IGRKTNFNQILEYVKDIRDMGMEVCCT----LGM------LEKH 185 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~-----~ge~~~~~~l~e~i~~ik~~~~~i~~~----~g~------l~~e 185 (289)
.++.++.+..++.+.+.|+..+-+.||..+. .++ ..++.+..+-+.+....+..... .|+ +.++
T Consensus 17 ~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e-~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~ 95 (582)
T TIGR01108 17 RMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNE-DPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVER 95 (582)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCC-CHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHH
Confidence 4899999999999999999999886543222 122 23333322222222222222221 132 2345
Q ss_pred HHHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec--CCCHHHHHHHHHHHhcCCCC
Q 022946 186 QAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL--GEAEEDRVGLLHTLATLPTH 263 (289)
Q Consensus 186 ~l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl--get~ed~~~~l~~l~~l~~~ 263 (289)
.++...++|++.+.+..-.. ..+....+++.+++.|+.+...+-+-. -.+.+.+.+.++.+.++ +
T Consensus 96 ~v~~a~~~Gvd~irif~~ln-----------d~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~--G 162 (582)
T TIGR01108 96 FVKKAVENGMDVFRIFDALN-----------DPRNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEM--G 162 (582)
T ss_pred HHHHHHHCCCCEEEEEEecC-----------cHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHc--C
Confidence 67788889999877654221 124567777888888877665533322 24667777777777777 3
Q ss_pred CCeee
Q 022946 264 PESVP 268 (289)
Q Consensus 264 ~~~v~ 268 (289)
.+.+.
T Consensus 163 ad~I~ 167 (582)
T TIGR01108 163 VDSIC 167 (582)
T ss_pred CCEEE
Confidence 55543
|
This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane. |
| >PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Probab=95.01 E-value=1.1 Score=43.30 Aligned_cols=135 Identities=12% Similarity=0.075 Sum_probs=78.5
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--Cce--EEEe----CCC------CCHHH
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GME--VCCT----LGM------LEKHQ 186 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~--i~~~----~g~------l~~e~ 186 (289)
.++.++.+..+..+.+.|+..+-+.||..+...-....+.-.+.++.+++. +.. .... .|+ +.++.
T Consensus 22 r~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~ 101 (592)
T PRK09282 22 RMRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKF 101 (592)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHH
Confidence 378999999999999999999988654321110000112334444444422 222 2211 121 24555
Q ss_pred HHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec--CCCHHHHHHHHHHHhcCCCCC
Q 022946 187 AIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL--GEAEEDRVGLLHTLATLPTHP 264 (289)
Q Consensus 187 l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl--get~ed~~~~l~~l~~l~~~~ 264 (289)
++...++|++.+.+..-. ........+++.+++.|..+...+-+-. ..|.+.+.+.++.+.+. +.
T Consensus 102 v~~A~~~Gvd~irif~~l-----------nd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~--Ga 168 (592)
T PRK09282 102 VEKAAENGIDIFRIFDAL-----------NDVRNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELEEM--GC 168 (592)
T ss_pred HHHHHHCCCCEEEEEEec-----------ChHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHc--CC
Confidence 778888899987765422 1235566777777777776654443322 35667777777777776 35
Q ss_pred Ceee
Q 022946 265 ESVP 268 (289)
Q Consensus 265 ~~v~ 268 (289)
+.+.
T Consensus 169 d~I~ 172 (592)
T PRK09282 169 DSIC 172 (592)
T ss_pred CEEE
Confidence 5544
|
|
| >PRK12581 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.95 E-value=1.5 Score=40.93 Aligned_cols=133 Identities=8% Similarity=0.063 Sum_probs=74.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCC-----CCCchhHHHHHHHHHHHHhcCceEEEe----CCCC------CHHH
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDT-----IGRKTNFNQILEYVKDIRDMGMEVCCT----LGML------EKHQ 186 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~-----~ge~~~~~~l~e~i~~ik~~~~~i~~~----~g~l------~~e~ 186 (289)
++.++++..+..+.+.|+..+.+.||.... ..| ..++++..+-+.+++..+..... .|+. .+..
T Consensus 32 ~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~e-dpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~f 110 (468)
T PRK12581 32 LSIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNE-DPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKF 110 (468)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCC-CHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHH
Confidence 789999999999999999999886543222 222 24455544444454333332222 2322 1233
Q ss_pred HHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec--CCCHHHHHHHHHHHhcCCCCC
Q 022946 187 AIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL--GEAEEDRVGLLHTLATLPTHP 264 (289)
Q Consensus 187 l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl--get~ed~~~~l~~l~~l~~~~ 264 (289)
++...+.|++.+.+.- . -...+....+++.+++.|..+...+.+-. ..|.+-..+.++.+.++ +.
T Consensus 111 v~~a~~~Gidi~Rifd--------~---lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~--Ga 177 (468)
T PRK12581 111 ISLSAQNGIDVFRIFD--------A---LNDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELVEM--GA 177 (468)
T ss_pred HHHHHHCCCCEEEEcc--------c---CCCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHc--CC
Confidence 6666778998776532 1 13456666677777777765443222211 34455566666666666 34
Q ss_pred Ceee
Q 022946 265 ESVP 268 (289)
Q Consensus 265 ~~v~ 268 (289)
+.+.
T Consensus 178 d~I~ 181 (468)
T PRK12581 178 DSIC 181 (468)
T ss_pred CEEE
Confidence 4443
|
|
| >PRK14057 epimerase; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.85 Score=38.91 Aligned_cols=127 Identities=13% Similarity=-0.016 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE-ecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCC-CCHHHHHHHHHcCCCeEec
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM-LEKHQAIELKKAGLTAYNH 200 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i-~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~-l~~e~l~~L~~aG~~~v~i 200 (289)
+.-.+.++++.+.+.|++.+++ ..++. +...-..-..+++.++. ...+++ +.-. -.+..++.+.++|.+.|.+
T Consensus 30 D~~~L~~el~~l~~~g~d~lHiDVMDG~-FVPNitfGp~~i~~i~~--~~p~Dv--HLMV~~P~~~i~~~~~aGad~It~ 104 (254)
T PRK14057 30 QWIALHRYLQQLEALNQPLLHLDLMDGQ-FCPQFTVGPWAVGQLPQ--TFIKDV--HLMVADQWTAAQACVKAGAHCITL 104 (254)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeccCCc-cCCccccCHHHHHHhcc--CCCeeE--EeeeCCHHHHHHHHHHhCCCEEEE
Confidence 4567888888998999999888 22221 11111122444444432 222232 2222 2456789999999999999
Q ss_pred CCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCc-------eeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccce
Q 022946 201 NLDTSREFYSKIITTRSYDERLETLKHVREAGIN-------VCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALL 273 (289)
Q Consensus 201 ~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-------v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~ 273 (289)
..|+. ....++++.+|+.|++ +.+++-+..+-..+.+...+.. .+.|-++.-.
T Consensus 105 H~Ea~-------------~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~-------vD~VLvMtV~ 164 (254)
T PRK14057 105 QAEGD-------------IHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSD-------VEVIQLLAVN 164 (254)
T ss_pred eeccc-------------cCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHh-------CCEEEEEEEC
Confidence 99863 1235667777777764 3445555444444444444432 3555555544
Q ss_pred e
Q 022946 274 A 274 (289)
Q Consensus 274 p 274 (289)
|
T Consensus 165 P 165 (254)
T PRK14057 165 P 165 (254)
T ss_pred C
Confidence 4
|
|
| >cd00423 Pterin_binding Pterin binding enzymes | Back alignment and domain information |
|---|
Probab=94.74 E-value=1.8 Score=37.22 Aligned_cols=135 Identities=18% Similarity=0.249 Sum_probs=77.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCC----CchhHHHHHHHHHHHHhc-CceEEEeCCCCCHHHHHHHHHcCCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG----RKTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~g----e~~~~~~l~e~i~~ik~~-~~~i~~~~g~l~~e~l~~L~~aG~~ 196 (289)
.+.+.+++.++...+.|.+-|-+++....|.. .....+++..+++.+++. ++.+ +....+.+.+++-.++|.+
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~pi--SIDT~~~~v~~aaL~~g~~ 98 (258)
T cd00423 21 LSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVPI--SVDTFNAEVAEAALKAGAD 98 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCeE--EEeCCcHHHHHHHHHhCCC
Confidence 58899999999999999998888765443332 234557788888887743 4443 3334445555554455544
Q ss_pred eEe-cCCCch-HHHHh---ccC--------C------------CCC----HHHHHHHHHHHHHcCC---ceeecEEeecC
Q 022946 197 AYN-HNLDTS-REFYS---KII--------T------------TRS----YDERLETLKHVREAGI---NVCSGGIIGLG 244 (289)
Q Consensus 197 ~v~-i~let~-~~~~~---~i~--------~------------~~~----~~~~~~~i~~~~~~Gi---~v~~~~i~Glg 244 (289)
.|+ ++.+.. +++.+ +.. . ... .+...+.++.+.+.|+ ++..+-.+|++
T Consensus 99 iINdis~~~~~~~~~~l~~~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~IilDPg~g~~ 178 (258)
T cd00423 99 IINDVSGGRGDPEMAPLAAEYGAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAATEAGIPPEDIILDPGIGFG 178 (258)
T ss_pred EEEeCCCCCCChHHHHHHHHcCCCEEEECcCCCCcccccCCCcchHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCCCCcc
Confidence 443 333222 22211 100 0 111 3455566677888997 36667677774
Q ss_pred CCHHHHHHHHHHHh
Q 022946 245 EAEEDRVGLLHTLA 258 (289)
Q Consensus 245 et~ed~~~~l~~l~ 258 (289)
-+.++-..+++.+.
T Consensus 179 k~~~~~~~~l~~i~ 192 (258)
T cd00423 179 KTEEHNLELLRRLD 192 (258)
T ss_pred CCHHHHHHHHHHHH
Confidence 35554444444443
|
This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH. |
| >PRK09722 allulose-6-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=1.9 Score=36.25 Aligned_cols=97 Identities=14% Similarity=0.108 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE-ecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCC-CCHHHHHHHHHcCCCeEec
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM-LEKHQAIELKKAGLTAYNH 200 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i-~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~-l~~e~l~~L~~aG~~~v~i 200 (289)
+.-.+.++++.+.. |++.+++ ..++. +...-..-..+++.++......+++ +.-. -....++.+.++|.+.|.+
T Consensus 13 d~~~l~~el~~l~~-g~d~lH~DiMDG~-FVPN~tfg~~~i~~ir~~t~~~~Dv--HLMv~~P~~~i~~~~~aGad~it~ 88 (229)
T PRK09722 13 DLLKFKEQIEFLNS-KADYFHIDIMDGH-FVPNLTLSPFFVSQVKKLASKPLDV--HLMVTDPQDYIDQLADAGADFITL 88 (229)
T ss_pred CHHHHHHHHHHHHh-CCCEEEEecccCc-cCCCcccCHHHHHHHHhcCCCCeEE--EEEecCHHHHHHHHHHcCCCEEEE
Confidence 34566777777766 8888887 22221 1111112244555554432222333 2211 2466789999999999999
Q ss_pred CCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCce
Q 022946 201 NLDTSREFYSKIITTRSYDERLETLKHVREAGINV 235 (289)
Q Consensus 201 ~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v 235 (289)
..|+.. ....+.++.+|++|+++
T Consensus 89 H~Ea~~------------~~~~~~i~~Ik~~G~ka 111 (229)
T PRK09722 89 HPETIN------------GQAFRLIDEIRRAGMKV 111 (229)
T ss_pred CccCCc------------chHHHHHHHHHHcCCCE
Confidence 998631 12346777788888765
|
|
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=94.59 E-value=1.5 Score=37.17 Aligned_cols=74 Identities=15% Similarity=0.128 Sum_probs=52.6
Q ss_pred HHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch
Q 022946 127 VMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 205 (289)
Q Consensus 127 i~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~ 205 (289)
.++.++.+.+.|++++++..-+... |...++ ++++++. ..++++....|.-+.|.++.+..+|++.+.+|-...
T Consensus 34 p~~~a~~~~~~g~~~l~ivDLd~~~-g~~~n~----~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l 108 (241)
T PRK14024 34 PLDAALAWQRDGAEWIHLVDLDAAF-GRGSNR----ELLAEVVGKLDVKVELSGGIRDDESLEAALATGCARVNIGTAAL 108 (241)
T ss_pred HHHHHHHHHHCCCCEEEEEeccccC-CCCccH----HHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHh
Confidence 3445566778999999997643222 333333 5555554 347788888899999999999999999998876553
|
|
| >cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.31 Score=40.77 Aligned_cols=120 Identities=15% Similarity=0.212 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHcCCcEEEEe----------cccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHc
Q 022946 124 KDAVMQAAQKAKEAGSTRFCMG----------AAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKA 193 (289)
Q Consensus 124 ~eei~~~~~~~~~~g~~~i~i~----------~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~a 193 (289)
.+++++.+.+. ..+.++++ ||+ +. ....+.+.+.++.+++.|+.+..... -+.+.++.-++.
T Consensus 72 t~em~~ia~~~---kP~~vtLVPEkr~E~TTegGl-dv---~~~~~~l~~~i~~l~~~gI~VSLFiD-Pd~~qi~~A~~~ 143 (234)
T cd00003 72 TEEMLEIALEV---KPHQVTLVPEKREELTTEGGL-DV---AGQAEKLKPIIERLKDAGIRVSLFID-PDPEQIEAAKEV 143 (234)
T ss_pred CHHHHHHHHHC---CCCEEEECCCCCCCccCCccc-hh---hcCHHHHHHHHHHHHHCCCEEEEEeC-CCHHHHHHHHHh
Confidence 46666665544 44566664 222 11 13668899999999999998765543 568899999999
Q ss_pred CCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHH
Q 022946 194 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLH 255 (289)
Q Consensus 194 G~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~ 255 (289)
|.++|.+.-..+.+.+..-.....++.+.++.+.+++.|+.|+ .|+|=+.+.+.....
T Consensus 144 GAd~VELhTG~Ya~a~~~~~~~~el~~i~~aa~~a~~~GL~Vn----AGHgLny~Nv~~i~~ 201 (234)
T cd00003 144 GADRVELHTGPYANAYDKAEREAELERIAKAAKLARELGLGVN----AGHGLNYENVKPIAK 201 (234)
T ss_pred CcCEEEEechhhhcCCCchhHHHHHHHHHHHHHHHHHcCCEEe----cCCCCCHHHHHHHHh
Confidence 9999987665542222111111246778888888899999885 567777777655544
|
In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed, |
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.95 Score=37.28 Aligned_cols=94 Identities=16% Similarity=0.130 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--CceEEEeCCCCC--HHHHHHHHHcCCCe
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLE--KHQAIELKKAGLTA 197 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~i~~~~g~l~--~e~l~~L~~aG~~~ 197 (289)
.+.++.++.++.+ +.|++.+-++. +.....-.+.++.+++. +..+....-.++ ...++.+.++|.+.
T Consensus 9 ~~~~~a~~~~~~l-~~~v~~iev~~--------~l~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~ 79 (206)
T TIGR03128 9 LDIEEALELAEKV-ADYVDIIEIGT--------PLIKNEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADI 79 (206)
T ss_pred CCHHHHHHHHHHc-ccCeeEEEeCC--------HHHHHhCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCE
Confidence 4778888888888 77777665532 22333335566666533 223322211122 23689999999999
Q ss_pred EecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCcee
Q 022946 198 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVC 236 (289)
Q Consensus 198 v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~ 236 (289)
+.+..++. .....+.++.+++.|+++.
T Consensus 80 i~vh~~~~------------~~~~~~~i~~~~~~g~~~~ 106 (206)
T TIGR03128 80 VTVLGVAD------------DATIKGAVKAAKKHGKEVQ 106 (206)
T ss_pred EEEeccCC------------HHHHHHHHHHHHHcCCEEE
Confidence 98877652 1334567777888887663
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.037 Score=47.37 Aligned_cols=49 Identities=14% Similarity=0.123 Sum_probs=42.8
Q ss_pred CCcccc-ccccccccccchHHHHHHHHHhcCCCCCCCHHHHHHhhCCChHHHH
Q 022946 19 SKKFLA-LHSSCSCYSASAAAIEAERTIREGPRHDWSKDDIKSIYDSPVLDLL 70 (289)
Q Consensus 19 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ee~~~l~~~~~~~l~ 70 (289)
-+||++ .|.+|++|+|.++..+++.+++ -.+++.+|+...+..+...++
T Consensus 205 DsPyl~P~p~rGkrNeP~~v~~v~~~iAe---lk~~~~eeva~~t~~N~~~lf 254 (256)
T COG0084 205 DAPYLAPVPYRGKRNEPAYVRHVAEKLAE---LKGISAEEVAEITTENAKRLF 254 (256)
T ss_pred CCCCCCCcCCCCCCCCchHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHh
Confidence 499999 7999999999999999999999 889999999988766555443
|
|
| >PRK08883 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=94.47 E-value=2.4 Score=35.45 Aligned_cols=98 Identities=15% Similarity=0.126 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE-ecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCC-CCHHHHHHHHHcCCCeEec
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM-LEKHQAIELKKAGLTAYNH 200 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i-~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~-l~~e~l~~L~~aG~~~v~i 200 (289)
+.-.+.++++.+.+.|++.+++ ..++. +...-.+-..+++.++... ..+.+.++.-. -....++.+.++|.+.+.+
T Consensus 10 d~~~l~~~i~~l~~~g~~~lH~DvmDG~-Fvpn~tfg~~~i~~i~~~~-~~~~~dvHLMv~~p~~~i~~~~~~gad~i~~ 87 (220)
T PRK08883 10 DFARLGEDVEKVLAAGADVVHFDVMDNH-YVPNLTFGAPICKALRDYG-ITAPIDVHLMVKPVDRIIPDFAKAGASMITF 87 (220)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCc-ccCccccCHHHHHHHHHhC-CCCCEEEEeccCCHHHHHHHHHHhCCCEEEE
Confidence 4567788888888999999887 22221 2211122245555555431 12333333222 2456789999999999999
Q ss_pred CCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCce
Q 022946 201 NLDTSREFYSKIITTRSYDERLETLKHVREAGINV 235 (289)
Q Consensus 201 ~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v 235 (289)
..|+. +...+.++.+|+.|++.
T Consensus 88 H~Ea~-------------~~~~~~l~~ik~~g~k~ 109 (220)
T PRK08883 88 HVEAS-------------EHVDRTLQLIKEHGCQA 109 (220)
T ss_pred cccCc-------------ccHHHHHHHHHHcCCcE
Confidence 99873 12345566666666654
|
|
| >PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.29 Score=41.12 Aligned_cols=117 Identities=15% Similarity=0.195 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHcCCcEEEEec---------ccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcC
Q 022946 124 KDAVMQAAQKAKEAGSTRFCMGA---------AWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAG 194 (289)
Q Consensus 124 ~eei~~~~~~~~~~g~~~i~i~~---------~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG 194 (289)
.+++++.+...+. +.++++- +|-+. ....+.+.+.++.++..|+.+..... -+.+.++.-++.|
T Consensus 73 t~e~~~ia~~~kP---~~vtLVPE~r~e~TTegGldv---~~~~~~l~~~i~~L~~~gIrvSLFiD-P~~~qi~~A~~~G 145 (239)
T PF03740_consen 73 TEEMVDIALKVKP---DQVTLVPEKREELTTEGGLDV---AGNRDRLKPVIKRLKDAGIRVSLFID-PDPEQIEAAKELG 145 (239)
T ss_dssp SHHHHHHHHHH-----SEEEEE--SGGGBSTTSSB-T---CGGHHHHHHHHHHHHHTT-EEEEEE--S-HHHHHHHHHTT
T ss_pred CHHHHHHHHhCCc---CEEEECCCCCCCcCCCcCChh---hcCHHHHHHHHHHHHhCCCEEEEEeC-CCHHHHHHHHHcC
Confidence 3777777665554 5677752 11111 23578999999999999998765543 4588999999999
Q ss_pred CCeEecCCCchHHHHhccCCCCC--HHHHHHHHHHHHHcCCceeecEEeecCCCHHHHH
Q 022946 195 LTAYNHNLDTSREFYSKIITTRS--YDERLETLKHVREAGINVCSGGIIGLGEAEEDRV 251 (289)
Q Consensus 195 ~~~v~i~let~~~~~~~i~~~~~--~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~ 251 (289)
.++|.+.-..+.+.+..-..... ++.+.++.+.+++.|+.|+ .|+|=+.+.+.
T Consensus 146 ad~VELhTG~yA~a~~~~~~~~~ell~~l~~aa~~a~~lGL~Vn----AGHgL~y~N~~ 200 (239)
T PF03740_consen 146 ADRVELHTGPYANAFDDAEEAEEELLERLRDAARYAHELGLGVN----AGHGLNYDNVR 200 (239)
T ss_dssp -SEEEEETHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHTT-EEE----EETT--TTTHH
T ss_pred CCEEEEehhHhhhhcCCHHHHHHHHHHHHHHHHHHHHHcCCEEe----cCCCCCHHHHH
Confidence 99998765444222211000111 5777888888899999886 45555544433
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D .... |
| >TIGR00559 pdxJ pyridoxine 5'-phosphate synthase | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.37 Score=40.35 Aligned_cols=119 Identities=15% Similarity=0.195 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHcCCcEEEEe----------cccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHc
Q 022946 124 KDAVMQAAQKAKEAGSTRFCMG----------AAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKA 193 (289)
Q Consensus 124 ~eei~~~~~~~~~~g~~~i~i~----------~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~a 193 (289)
.+++++.+... ..+.++++ ||+ +. ....+.+.+.++.++..|+.+..... -+.+.++.-++.
T Consensus 72 ~~emi~ia~~v---kP~~vtLVPEkr~ElTTegGl-dv---~~~~~~l~~~i~~l~~~gI~VSLFiD-P~~~qi~~A~~~ 143 (237)
T TIGR00559 72 TEEMIRIAEEI---KPEQVTLVPEARDEVTTEGGL-DV---ARLKDKLCELVKRFHAAGIEVSLFID-ADKDQISAAAEV 143 (237)
T ss_pred CHHHHHHHHHc---CCCEEEECCCCCCCccCCcCc-hh---hhCHHHHHHHHHHHHHCCCEEEEEeC-CCHHHHHHHHHh
Confidence 46666665544 45666664 222 11 13568899999999999998765543 468899999999
Q ss_pred CCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHH
Q 022946 194 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLL 254 (289)
Q Consensus 194 G~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l 254 (289)
|.++|.+.-..+.+-+..-.....++.+.++.+.+++.|+.|+ .|+|=+.+.+....
T Consensus 144 GAd~VELhTG~YA~a~~~~~~~~el~~i~~aa~~A~~lGL~Vn----AGHgLny~Nv~~i~ 200 (237)
T TIGR00559 144 GADRIEIHTGPYANAYNKKEMAEELQRIVKASVHAHSLGLKVN----AGHGLNYHNVKYFA 200 (237)
T ss_pred CcCEEEEechhhhcCCCchhHHHHHHHHHHHHHHHHHcCCEEe----cCCCCCHHhHHHHH
Confidence 9999988665552221110001236777788888888998885 46777777665544
|
PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate. |
| >PRK08745 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=94.42 E-value=2.4 Score=35.58 Aligned_cols=97 Identities=11% Similarity=0.085 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE-ecccCCCCCCchhHHHHHHHHHHH-HhcCceEEEeCCC-CCHHHHHHHHHcCCCeEe
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNFNQILEYVKDI-RDMGMEVCCTLGM-LEKHQAIELKKAGLTAYN 199 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i-~~~~~~~~ge~~~~~~l~e~i~~i-k~~~~~i~~~~g~-l~~e~l~~L~~aG~~~v~ 199 (289)
+.-.+.++++.+.+.|++.+++ ..++. +...-.+-..+++.++.. ....+++ +.-. -....++.+.++|.+.|.
T Consensus 14 d~~~l~~~i~~l~~~g~d~lHiDimDG~-FVPN~tfg~~~i~~lr~~~~~~~~dv--HLMv~~P~~~i~~~~~~gad~I~ 90 (223)
T PRK08745 14 DFARLGEEVDNVLKAGADWVHFDVMDNH-YVPNLTIGPMVCQALRKHGITAPIDV--HLMVEPVDRIVPDFADAGATTIS 90 (223)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCc-cCCCcccCHHHHHHHHhhCCCCCEEE--EeccCCHHHHHHHHHHhCCCEEE
Confidence 4467788888888999999887 22222 221112224555555543 1222333 2222 245678999999999999
Q ss_pred cCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCce
Q 022946 200 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINV 235 (289)
Q Consensus 200 i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v 235 (289)
+..|+. ....++++.+|++|++.
T Consensus 91 ~H~Ea~-------------~~~~~~l~~Ir~~g~k~ 113 (223)
T PRK08745 91 FHPEAS-------------RHVHRTIQLIKSHGCQA 113 (223)
T ss_pred EcccCc-------------ccHHHHHHHHHHCCCce
Confidence 999863 12345667777777654
|
|
| >PRK13753 dihydropteroate synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.02 E-value=3.7 Score=35.61 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=55.8
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCc----hhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCC
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK----TNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~----~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~ 196 (289)
+++++.+++.++.+.+.|++-|-++|....|+..+ ....++...++.+++.+.. ++..+...+++++-.++|++
T Consensus 21 ~~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~~--ISIDT~~~~va~~al~aGad 98 (279)
T PRK13753 21 RLDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMHR--VSIDSFQPETQRYALKRGVG 98 (279)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCCc--EEEECCCHHHHHHHHHcCCC
Confidence 36899999999999999999888876443333222 3567778888888865433 35566778888877788887
Q ss_pred eEe
Q 022946 197 AYN 199 (289)
Q Consensus 197 ~v~ 199 (289)
.|+
T Consensus 99 iIN 101 (279)
T PRK13753 99 YLN 101 (279)
T ss_pred EEE
Confidence 665
|
|
| >PRK05265 pyridoxine 5'-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.62 Score=39.12 Aligned_cols=116 Identities=11% Similarity=0.173 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHcCCcEEEEe----------cccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHc
Q 022946 124 KDAVMQAAQKAKEAGSTRFCMG----------AAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKA 193 (289)
Q Consensus 124 ~eei~~~~~~~~~~g~~~i~i~----------~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~a 193 (289)
.+++++.+... ..+.++++ ||+ +. ....+.+.+.++.++..|+.+..... -+.+.++.-++.
T Consensus 75 ~~em~~ia~~~---kP~~vtLVPE~r~E~TTegGl-dv---~~~~~~l~~~i~~L~~~gIrVSLFid-P~~~qi~~A~~~ 146 (239)
T PRK05265 75 TEEMLDIALEV---KPHQVTLVPEKREELTTEGGL-DV---AGQFDKLKPAIARLKDAGIRVSLFID-PDPEQIEAAAEV 146 (239)
T ss_pred CHHHHHHHHHC---CCCEEEECCCCCCCccCCccc-hh---hcCHHHHHHHHHHHHHCCCEEEEEeC-CCHHHHHHHHHh
Confidence 36666665544 44566664 222 11 23668899999999999988755543 578899999999
Q ss_pred CCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHH
Q 022946 194 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVG 252 (289)
Q Consensus 194 G~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~ 252 (289)
|.++|.+.-..+.+.+.. .....++.+..+.+.+++.|+.|+ .|+|=+.+.+..
T Consensus 147 GAd~VELhTG~yA~a~~~-~~~~el~~~~~aa~~a~~lGL~Vn----AGHgLny~Nv~~ 200 (239)
T PRK05265 147 GADRIELHTGPYADAKTE-AEAAELERIAKAAKLAASLGLGVN----AGHGLNYHNVKP 200 (239)
T ss_pred CcCEEEEechhhhcCCCc-chHHHHHHHHHHHHHHHHcCCEEe----cCCCCCHHhHHH
Confidence 999998866555222211 112247778888888899999885 567777777666
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=93.64 E-value=1.6 Score=37.01 Aligned_cols=132 Identities=16% Similarity=0.154 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCc
Q 022946 126 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (289)
Q Consensus 126 ei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let 204 (289)
+..+.++.+.+.|++.+++..-+....+.+. -.++++.++ ..++++....|.-+.+.++.+.+.|++.+.++-..
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~----~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~ 103 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEGRET----MLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSINSAA 103 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCcccccCcc----cHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEECchh
Confidence 4455555666889999988653322112222 345555555 35788888899999999999999999999887533
Q ss_pred hHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEE-----------eec-CCCHHHHHHHHHHHhcCCCCCCeeeeccc
Q 022946 205 SREFYSKIITTRSYDERLETLKHVREAGINVCSGGI-----------IGL-GEAEEDRVGLLHTLATLPTHPESVPINAL 272 (289)
Q Consensus 205 ~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i-----------~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~ 272 (289)
. .+++...+..+.+.+..+.+..++- -|- .++..+..+.++.+.+. +.+.+.+...
T Consensus 104 ~----------~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~--G~d~i~v~~i 171 (243)
T cd04731 104 V----------ENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEEL--GAGEILLTSM 171 (243)
T ss_pred h----------hChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHC--CCCEEEEecc
Confidence 2 1233333333333222232222221 122 34455666777777777 4677766554
Q ss_pred e
Q 022946 273 L 273 (289)
Q Consensus 273 ~ 273 (289)
.
T Consensus 172 ~ 172 (243)
T cd04731 172 D 172 (243)
T ss_pred C
Confidence 3
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=93.61 E-value=4 Score=39.45 Aligned_cols=133 Identities=8% Similarity=0.056 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCC-----CCchhHHHHHHHHHHHHhcCceEEEe----CCC--CCHH----H
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-----GRKTNFNQILEYVKDIRDMGMEVCCT----LGM--LEKH----Q 186 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~-----ge~~~~~~l~e~i~~ik~~~~~i~~~----~g~--l~~e----~ 186 (289)
+..++++..+..+.+.|+..+-+.||..... .| ..++++..+-+.+++..+..... .|+ ..++ .
T Consensus 23 ~~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~e-dpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~ 101 (596)
T PRK14042 23 MRTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKE-DPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAF 101 (596)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEeeCCcccceeecccCC-CHHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHH
Confidence 7889999999999999999987765432211 11 23334433333343333333321 232 3333 4
Q ss_pred HHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecE--EeecCCCHHHHHHHHHHHhcCCCCC
Q 022946 187 AIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGG--IIGLGEAEEDRVGLLHTLATLPTHP 264 (289)
Q Consensus 187 l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~--i~Glget~ed~~~~l~~l~~l~~~~ 264 (289)
++..++.|+|.+.+.- + -...+.....++.+++.|..+...+ +.....|.+.+.+.++.+.++ +.
T Consensus 102 v~~a~~~Gidv~Rifd-~----------lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~--Ga 168 (596)
T PRK14042 102 VKLAVNNGVDVFRVFD-A----------LNDARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEM--GC 168 (596)
T ss_pred HHHHHHcCCCEEEEcc-c----------CcchHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHc--CC
Confidence 5666777998776532 0 0344555556666666666544332 222256666666666666666 34
Q ss_pred Ceee
Q 022946 265 ESVP 268 (289)
Q Consensus 265 ~~v~ 268 (289)
+.+.
T Consensus 169 d~I~ 172 (596)
T PRK14042 169 DSIA 172 (596)
T ss_pred CEEE
Confidence 4443
|
|
| >COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.7 Score=38.38 Aligned_cols=80 Identities=11% Similarity=0.085 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE-ecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecC
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 201 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i-~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~ 201 (289)
+...+-++++.+.+.|++.+++ +.++. +...-+.-..+++.++...+.-+.++.-. .-.+..++.+.++|.+.|++.
T Consensus 14 D~~~l~~el~~~~~agad~iH~DVMDgh-FVPNiTfGp~~v~~l~~~t~~p~DvHLMV-~~p~~~i~~fa~agad~It~H 91 (220)
T COG0036 14 DFARLGEELKALEAAGADLIHIDVMDGH-FVPNITFGPPVVKALRKITDLPLDVHLMV-ENPDRYIEAFAKAGADIITFH 91 (220)
T ss_pred CHhHHHHHHHHHHHcCCCEEEEeccCCC-cCCCcccCHHHHHHHhhcCCCceEEEEec-CCHHHHHHHHHHhCCCEEEEE
Confidence 4456677788888899999887 33222 22222333566666665333333333211 123667899999999999999
Q ss_pred CCc
Q 022946 202 LDT 204 (289)
Q Consensus 202 let 204 (289)
.|+
T Consensus 92 ~E~ 94 (220)
T COG0036 92 AEA 94 (220)
T ss_pred ecc
Confidence 984
|
|
| >PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5 | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.63 Score=38.38 Aligned_cols=127 Identities=17% Similarity=0.168 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHcCCcEEEE-ecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecCC
Q 022946 124 KDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 124 ~eei~~~~~~~~~~g~~~i~i-~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
.-.+.++++.+.+.|++.+++ ..++. +...-..-..+++.++......++++.-. .-+...++.++++|.+.|.+.+
T Consensus 11 ~~~l~~~i~~l~~~g~d~lHiDiMDg~-fvpn~~~g~~~i~~i~~~~~~~~DvHLMv-~~P~~~i~~~~~~g~~~i~~H~ 88 (201)
T PF00834_consen 11 FLNLEEEIKRLEEAGADWLHIDIMDGH-FVPNLTFGPDIIKAIRKITDLPLDVHLMV-ENPERYIEEFAEAGADYITFHA 88 (201)
T ss_dssp GGGHHHHHHHHHHTT-SEEEEEEEBSS-SSSSB-B-HHHHHHHHTTSSSEEEEEEES-SSGGGHHHHHHHHT-SEEEEEG
T ss_pred HHHHHHHHHHHHHcCCCEEEEeecccc-cCCcccCCHHHHHHHhhcCCCcEEEEeee-ccHHHHHHHHHhcCCCEEEEcc
Confidence 345677778888899999887 33222 22112233455555544422223332211 1245678999999999999999
Q ss_pred CchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeecccee
Q 022946 203 DTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 274 (289)
Q Consensus 203 et~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p 274 (289)
|+. ++..+.++.+++.|++++..+ . .+|+- +.++.+.. ..+.|-++.-.|
T Consensus 89 E~~-------------~~~~~~i~~ik~~g~k~Gial--n-P~T~~---~~~~~~l~---~vD~VlvMsV~P 138 (201)
T PF00834_consen 89 EAT-------------EDPKETIKYIKEAGIKAGIAL--N-PETPV---EELEPYLD---QVDMVLVMSVEP 138 (201)
T ss_dssp GGT-------------TTHHHHHHHHHHTTSEEEEEE----TTS-G---GGGTTTGC---CSSEEEEESS-T
T ss_pred cch-------------hCHHHHHHHHHHhCCCEEEEE--E-CCCCc---hHHHHHhh---hcCEEEEEEecC
Confidence 763 233567788888888764332 2 22322 12222222 257777766544
|
1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D .... |
| >PLN02321 2-isopropylmalate synthase | Back alignment and domain information |
|---|
Probab=93.31 E-value=4.2 Score=39.59 Aligned_cols=143 Identities=15% Similarity=0.114 Sum_probs=78.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-cC----ceEEEeCCCCCHHHHHHHHHcC
Q 022946 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MG----MEVCCTLGMLEKHQAIELKKAG 194 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~~----~~i~~~~g~l~~e~l~~L~~aG 194 (289)
..++.++-++.++.+.+.|++.|..+. |.-.|..++.+..+.+.++. .. +...+..+....+.++.-.+++
T Consensus 103 ~~~s~eeKl~Ia~~L~~lGVd~IEvGf----P~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId~A~~al 178 (632)
T PLN02321 103 ATLTSKEKLDIARQLAKLGVDIIEAGF----PIASPDDLEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDIDAAWEAV 178 (632)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC----cCCCccHHHHHHHHHHhcccCCCccccceeeeeehhccHHhHHHHHHHh
Confidence 348999999999999999999998753 12224455554444333321 11 1212223334555666666652
Q ss_pred --C--CeEecCCCchHH-HHhccCCC--CCHHHHHHHHHHHHHcCCc-eeecEEeecCCCHHHHHHHHHHHhcCCCCCCe
Q 022946 195 --L--TAYNHNLDTSRE-FYSKIITT--RSYDERLETLKHVREAGIN-VCSGGIIGLGEAEEDRVGLLHTLATLPTHPES 266 (289)
Q Consensus 195 --~--~~v~i~let~~~-~~~~i~~~--~~~~~~~~~i~~~~~~Gi~-v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~ 266 (289)
. .+|.+.+-+.+- ...+++.. ...+...+.++.+++.|.. +..+.--+..-+++.+.+.++.+.+. +++.
T Consensus 179 ~~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~rtd~d~l~~~~~~a~~a--Ga~~ 256 (632)
T PLN02321 179 KHAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAGRSDPEFLYRILGEVIKA--GATT 256 (632)
T ss_pred cCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecccCCCCCHHHHHHHHHHHHHc--CCCE
Confidence 2 246655544422 22333321 2355566677778888874 44433333334456667777777776 3454
Q ss_pred ee
Q 022946 267 VP 268 (289)
Q Consensus 267 v~ 268 (289)
+.
T Consensus 257 I~ 258 (632)
T PLN02321 257 LN 258 (632)
T ss_pred EE
Confidence 43
|
|
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=93.28 E-value=2.5 Score=35.43 Aligned_cols=74 Identities=16% Similarity=0.167 Sum_probs=50.3
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch
Q 022946 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 205 (289)
Q Consensus 128 ~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~ 205 (289)
.+.++.+.+.|++.+++.+-+....|.+.+ .+.++.+. ..++++....|.-+.+.++++.++|++.+.++-...
T Consensus 33 ~~~a~~~~~~g~~~i~v~dld~~~~g~~~~----~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l 107 (233)
T PRK00748 33 VAQAKAWEDQGAKWLHLVDLDGAKAGKPVN----LELIEAIVKAVDIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAV 107 (233)
T ss_pred HHHHHHHHHcCCCEEEEEeCCccccCCccc----HHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHH
Confidence 444555667899999887643222232233 34444443 346788888899999999999999999998776443
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=92.89 E-value=1.4 Score=41.28 Aligned_cols=120 Identities=17% Similarity=0.204 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--CceEEEeCCCCCHHHHHHHHHcCCCeEecCC
Q 022946 125 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 125 eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
+++.+.++.+.+.|++.+++-... |.+ ..+.++++.+++. ++.+..-| ..+.+....|.++|+|.|.+|+
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D~a~----g~~---~~~~~~i~~i~~~~~~~~vi~g~-~~t~~~~~~l~~~G~d~i~vg~ 295 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVIDTAH----GHQ---VKMISAIKAVRALDLGVPIVAGN-VVSAEGVRDLLEAGANIIKVGV 295 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEeCCC----CCc---HHHHHHHHHHHHHCCCCeEEEec-cCCHHHHHHHHHhCCCEEEECC
Confidence 456677778888999998874321 322 7888889998865 45555533 5889999999999999999877
Q ss_pred Cch-HHHHhccCC--CCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHH
Q 022946 203 DTS-REFYSKIIT--TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLH 255 (289)
Q Consensus 203 et~-~~~~~~i~~--~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~ 255 (289)
-.. -=+.+.+.. ......++++.+.+++.|+++.++ |=-.+..|+...+.
T Consensus 296 g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viad---Ggi~~~~di~kala 348 (475)
T TIGR01303 296 GPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWAD---GGVRHPRDVALALA 348 (475)
T ss_pred cCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEe---CCCCCHHHHHHHHH
Confidence 654 222222222 124677788888888887664221 11235556555544
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=92.83 E-value=2.2 Score=35.96 Aligned_cols=101 Identities=12% Similarity=0.178 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecC
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 201 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~ 201 (289)
++-.+.++++.+.+.|++.+++---+..+...-..-..+++.++... ...+.+..-. .-....++.+.++|+|.+.+-
T Consensus 17 d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~-~~p~~~i~~~~~~Gad~itvH 95 (228)
T PTZ00170 17 DFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMV-SNPEKWVDDFAKAGASQFTFH 95 (228)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCccCCCcCcCHHHHHHHHhcCCCCCEEEEECC-CCHHHHHHHHHHcCCCEEEEe
Confidence 45677888899999999998872211112111112234444443321 2223332221 123556799999999999998
Q ss_pred CCchHHHHhccCCCCCHHHHHHHHHHHHHcCCcee
Q 022946 202 LDTSREFYSKIITTRSYDERLETLKHVREAGINVC 236 (289)
Q Consensus 202 let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~ 236 (289)
.|+.. ....++++.+++.|..+.
T Consensus 96 ~ea~~------------~~~~~~l~~ik~~G~~~g 118 (228)
T PTZ00170 96 IEATE------------DDPKAVARKIREAGMKVG 118 (228)
T ss_pred ccCCc------------hHHHHHHHHHHHCCCeEE
Confidence 87631 114456666666676544
|
|
| >PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.22 Score=44.80 Aligned_cols=146 Identities=16% Similarity=0.135 Sum_probs=77.9
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCC-chhHHHHHHHHHHHHhcCceEEEe--CCC-----CCHHHHHHHHHcC
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR-KTNFNQILEYVKDIRDMGMEVCCT--LGM-----LEKHQAIELKKAG 194 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge-~~~~~~l~e~i~~ik~~~~~i~~~--~g~-----l~~e~l~~L~~aG 194 (289)
+.++..+.++.+.++|+++|+.+-. .+.+. ....+++.++++..++.++++.+. ... .+.+.++.|++.|
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~--ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~~lg~~~~dl~~~~~lG 89 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLH--IPEDDPEDYLERLKELLKLAKELGMEVIADISPKVLKKLGISYDDLSFFKELG 89 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE-----------HHHHHHHHHHHHHHCT-EEEEEE-CCHHHTTT-BTTBTHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCC--cCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCHHHHHHHHHcC
Confidence 5788999999999999988855331 11111 246688888888888889887543 221 2344578999999
Q ss_pred CCeEec--CCCch--HHHHhc-cCC--CCCHHHHHHHHHHHHHcCC-----ceeecEEe--ecCCCHHHHHHHHHHHhcC
Q 022946 195 LTAYNH--NLDTS--REFYSK-IIT--TRSYDERLETLKHVREAGI-----NVCSGGII--GLGEAEEDRVGLLHTLATL 260 (289)
Q Consensus 195 ~~~v~i--~let~--~~~~~~-i~~--~~~~~~~~~~i~~~~~~Gi-----~v~~~~i~--Glget~ed~~~~l~~l~~l 260 (289)
++.+-+ |+... .++-+. +.- ..|. ---+.++.+.+.|. ..+.++-. ..|=+.+.+.+.-+++++.
T Consensus 90 i~~lRlD~Gf~~~~ia~ls~ng~~I~LNASt-i~~~~l~~L~~~~~~~~~i~a~HNfYPr~~TGLs~~~f~~~n~~~k~~ 168 (357)
T PF05913_consen 90 IDGLRLDYGFSGEEIAKLSKNGIKIELNAST-ITEEELDELIKYGANFSNIIACHNFYPRPYTGLSEEFFIEKNQLLKEY 168 (357)
T ss_dssp -SEEEESSS-SCHHHHHHTTT-SEEEEETTT---CCHHHHHCCTT--GGGEEEE---B-STT-SB-HHHHHHHHHHHHHT
T ss_pred CCEEEECCCCCHHHHHHHHhCCCEEEEECCC-CChHHHHHHHHhcCCHHHeEEEecccCCCCCCCCHHHHHHHHHHHHHC
Confidence 998876 44442 111111 100 1111 01223344555553 23344433 1256778888888888888
Q ss_pred CCCCCeeeeccceecC
Q 022946 261 PTHPESVPINALLAVK 276 (289)
Q Consensus 261 ~~~~~~v~i~~~~p~p 276 (289)
+ +.+..|+|-.
T Consensus 169 --g---i~~~AFI~g~ 179 (357)
T PF05913_consen 169 --G---IKTAAFIPGD 179 (357)
T ss_dssp --T----EEEEEE--S
T ss_pred --C---CcEEEEecCC
Confidence 3 5678888865
|
The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A. |
| >cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=92.67 E-value=4 Score=36.30 Aligned_cols=79 Identities=13% Similarity=0.119 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccC--CCCC----CchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWR--DTIG----RKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGL 195 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~--~~~g----e~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~ 195 (289)
-+++++.+.++...+.|++.|-+...+. .... .....+.+.++++..++.++.+.++.. ....++.+.++|+
T Consensus 117 ~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~--~~~~i~~~l~~G~ 194 (342)
T cd01299 117 DGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAAHAY--GAEAIRRAIRAGV 194 (342)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEEEeC--CHHHHHHHHHcCC
Confidence 4689999999999999998875532111 1101 013446677777777777776655432 1233444455555
Q ss_pred CeEecCC
Q 022946 196 TAYNHNL 202 (289)
Q Consensus 196 ~~v~i~l 202 (289)
+.+.++.
T Consensus 195 ~~i~H~~ 201 (342)
T cd01299 195 DTIEHGF 201 (342)
T ss_pred CEEeecC
Confidence 5555543
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=92.61 E-value=4.5 Score=33.84 Aligned_cols=73 Identities=21% Similarity=0.202 Sum_probs=48.9
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCc
Q 022946 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (289)
Q Consensus 128 ~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let 204 (289)
.+.++.+.+.|++.+++..-+....|.+.+++ +++.+. ...+++....|.-+.+.++.+.++|++.+.++-..
T Consensus 31 ~~~a~~~~~~g~~~l~v~dl~~~~~g~~~~~~----~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~ 104 (230)
T TIGR00007 31 VEAAKKWEEEGAERIHVVDLDGAKEGGPVNLP----VIKKIVRETGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAA 104 (230)
T ss_pred HHHHHHHHHcCCCEEEEEeCCccccCCCCcHH----HHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHH
Confidence 44455567899999988653332223333333 333333 23677777888899999999999999999877533
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.79 Score=41.15 Aligned_cols=83 Identities=17% Similarity=0.049 Sum_probs=59.6
Q ss_pred CHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec-CCCHHHHHHHHHHHhcC
Q 022946 183 EKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLATL 260 (289)
Q Consensus 183 ~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l 260 (289)
+.+.++...++|.|.|++|.... -..+. ...+.+++.+.++.++++|.++...+=.-+ .+..+.+.+.++.+.++
T Consensus 15 ~l~~l~~ai~~GADaVY~G~~~~~~R~~a---~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~ 91 (347)
T COG0826 15 NLEDLKAAIAAGADAVYIGEKEFGLRRRA---LNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVEL 91 (347)
T ss_pred CHHHHHHHHHcCCCEEEeCCccccccccc---ccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHc
Confidence 46777888888999999998633 22221 235789999999999999997543332222 55667788999999999
Q ss_pred CCCCCeeeec
Q 022946 261 PTHPESVPIN 270 (289)
Q Consensus 261 ~~~~~~v~i~ 270 (289)
+++.|-+.
T Consensus 92 --GvDaviv~ 99 (347)
T COG0826 92 --GVDAVIVA 99 (347)
T ss_pred --CCCEEEEc
Confidence 57776553
|
|
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=92.47 E-value=3.8 Score=34.01 Aligned_cols=75 Identities=16% Similarity=0.121 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-cCceEEEeCCCCCHHHHHHHHHcCCCeEec
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNH 200 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i 200 (289)
.+.+...+.++.+.+.|++.+++........|.. +.++.+++ .++.+..-.+..+.+.++.+.++|++.+.+
T Consensus 28 ~~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~-------~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l 100 (217)
T cd00331 28 REDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSL-------EDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLL 100 (217)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEeCccccCCCH-------HHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEE
Confidence 3445566777777789999998875433332322 33333332 356665555667788999999999999987
Q ss_pred CCC
Q 022946 201 NLD 203 (289)
Q Consensus 201 ~le 203 (289)
+..
T Consensus 101 ~~~ 103 (217)
T cd00331 101 IVA 103 (217)
T ss_pred eec
Confidence 653
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=92.42 E-value=2.5 Score=35.50 Aligned_cols=75 Identities=20% Similarity=0.198 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCc
Q 022946 126 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (289)
Q Consensus 126 ei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let 204 (289)
+..+.++.+.+.|++.+++.+-.....+.+.+ .++++.++ ..++++....|..+.+.++++.++|++.+.++-..
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~----~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~ 105 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVN----LELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAA 105 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCccccCCCCC----HHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECchH
Confidence 44555566667899999887532221122233 34444444 34678888888899999999999999999877644
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >TIGR02146 LysS_fung_arch homocitrate synthase | Back alignment and domain information |
|---|
Probab=92.34 E-value=7.8 Score=34.54 Aligned_cols=138 Identities=13% Similarity=0.101 Sum_probs=86.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 201 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~ 201 (289)
++.++.++.++.+.+.|++.+.++... .. +.. ....+.+.... ....+ ...+....+.++...++|++.+.+.
T Consensus 17 ~~~~~ki~i~~~l~~~Gv~~iE~g~p~---~~-~~~-~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~ 89 (344)
T TIGR02146 17 FSTEQKIEIAKALDEFGIDYIEVTHPA---AS-KQS-RIDIEIIASLG-LKANI-VTHIRCRLDDAKVAVELGVDGIDIF 89 (344)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCC---CC-HHH-HHHHHHHHhcC-CCcEE-EEECCCCHHHHHHHHHCCcCEEEEE
Confidence 688999999999999999998776421 11 111 12233333322 11122 2223334667788888899887764
Q ss_pred CCch-HHHHhccCC--CCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeee
Q 022946 202 LDTS-REFYSKIIT--TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVP 268 (289)
Q Consensus 202 let~-~~~~~~i~~--~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~ 268 (289)
.-.. -........ ....+.+...++.+++.|+.+...+.-......+++.+..+.+..+ +++.+.
T Consensus 90 ~~~s~~~~~~~~~~~~~~~~~~v~~~~e~a~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~--g~~~i~ 157 (344)
T TIGR02146 90 FGTSKLLRIAEHRSDAKSILESARETIEYAKSAGLEVRFSAEDTFRSELADLLSIYETVGVF--GVDRVG 157 (344)
T ss_pred EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCHHHHHHHHHHHHHC--CCCEEE
Confidence 4222 222222222 2235677889999999999887777766666678888888888877 466543
|
This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs. |
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.33 E-value=1.4 Score=37.18 Aligned_cols=74 Identities=16% Similarity=0.152 Sum_probs=52.1
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCc
Q 022946 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (289)
Q Consensus 128 ~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let 204 (289)
.+.++...+.|++.++++.-+.-..|.+.+.+.+.++++.. ..++.+-.|.-+.+.++.|.++|++++.+|--+
T Consensus 34 ~~~a~~~~~~Ga~~lHlVDLdgA~~g~~~n~~~i~~i~~~~---~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~a 107 (241)
T COG0106 34 LEVAKKWSDQGAEWLHLVDLDGAKAGGPRNLEAIKEILEAT---DVPVQVGGGIRSLEDVEALLDAGVARVIIGTAA 107 (241)
T ss_pred HHHHHHHHHcCCcEEEEeeccccccCCcccHHHHHHHHHhC---CCCEEeeCCcCCHHHHHHHHHCCCCEEEEecce
Confidence 44455666789999998764333335555655555555444 666777788899999999999999999887544
|
|
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=92.21 E-value=2.4 Score=35.10 Aligned_cols=76 Identities=17% Similarity=0.108 Sum_probs=55.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-cCceEEEeCCCCCHHHHHHHHHcCCCeE
Q 022946 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAY 198 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~~~~i~~~~g~l~~e~l~~L~~aG~~~v 198 (289)
+.+++|++...+..+..+|.+.+++..+... +.+.. .++++.+++ .++.+..-.|.-+.+.++++.++|.|.+
T Consensus 129 p~~~~e~~~~~a~aa~~~G~~~i~Le~~sGa--~~~v~----~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~GAD~V 202 (205)
T TIGR01769 129 PYNKPEIAAAYCLAAKYFGMKWVYLEAGSGA--SYPVN----PETISLVKKASGIPLIVGGGIRSPEIAYEIVLAGADAI 202 (205)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEcCCCC--CCCCC----HHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcCCCEE
Confidence 3479999999988888899999988653211 11222 444555552 3677778889999999999999999998
Q ss_pred ecC
Q 022946 199 NHN 201 (289)
Q Consensus 199 ~i~ 201 (289)
-+|
T Consensus 203 VVG 205 (205)
T TIGR01769 203 VTG 205 (205)
T ss_pred EeC
Confidence 765
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >PRK15452 putative protease; Provisional | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.93 Score=42.13 Aligned_cols=90 Identities=9% Similarity=0.013 Sum_probs=61.2
Q ss_pred eEEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec-CCCHHHHH
Q 022946 174 EVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRV 251 (289)
Q Consensus 174 ~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-get~ed~~ 251 (289)
++.+..| +.+.++...++|.|.|++|.+.+ .+... ...+.+++.++++.+++.|.++...+-.=. .+..+.+.
T Consensus 5 eLlapag--~~e~l~aAi~~GADaVY~G~~~~~~R~~~---~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~ 79 (443)
T PRK15452 5 ELLSPAG--TLKNMRYAFAYGADAVYAGQPRYSLRVRN---NEFNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFI 79 (443)
T ss_pred EEEEECC--CHHHHHHHHHCCCCEEEECCCccchhhhc---cCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHH
Confidence 3444444 46788888899999999999887 44322 245779999999999999988655432212 33345566
Q ss_pred HHHHHHhcCCCCCCeeeec
Q 022946 252 GLLHTLATLPTHPESVPIN 270 (289)
Q Consensus 252 ~~l~~l~~l~~~~~~v~i~ 270 (289)
+.++.+.++ +++.+-+.
T Consensus 80 ~~l~~l~~~--gvDgvIV~ 96 (443)
T PRK15452 80 RDLEPVIAM--KPDALIMS 96 (443)
T ss_pred HHHHHHHhC--CCCEEEEc
Confidence 666777777 46766554
|
|
| >COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=92.19 E-value=4.4 Score=33.96 Aligned_cols=116 Identities=17% Similarity=0.244 Sum_probs=72.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCC---------------------
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG--------------------- 180 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g--------------------- 180 (289)
|+.|||++.+..+.+.|-+-+.+.+|+ |..+.-+.|-++.+.+.|+.+.+.+|
T Consensus 59 ~tLeeIi~~m~~a~~~Gk~VvRLhSGD------psiYgA~~EQm~~L~~~gI~yevvPGVss~~AAAA~L~~ELT~P~vs 132 (254)
T COG2875 59 LTLEEIIDLMVDAVREGKDVVRLHSGD------PSIYGALAEQMRELEALGIPYEVVPGVSSFAAAAAALGIELTVPGVS 132 (254)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEeecCC------hhHHHHHHHHHHHHHHcCCCeEEeCCchHHHHHHHHhCceeecCCcc
Confidence 899999999999999998878887643 55677788888888776665433222
Q ss_pred -------------CCCHHHHHHHHHcCCCeE-ecCCCchHHHHhccCCC----C---------CH-------HHHHHHHH
Q 022946 181 -------------MLEKHQAIELKKAGLTAY-NHNLDTSREFYSKIITT----R---------SY-------DERLETLK 226 (289)
Q Consensus 181 -------------~l~~e~l~~L~~aG~~~v-~i~let~~~~~~~i~~~----~---------~~-------~~~~~~i~ 226 (289)
....|.+..|.+.|.+.+ .+++...+++-+++..+ . +| ...-+...
T Consensus 133 QtvilTR~sgrt~vpe~e~l~~la~~~aTm~I~L~v~~I~~vv~~L~~g~y~~dtPVaVV~rAsWpDe~ii~GTL~dIa~ 212 (254)
T COG2875 133 QTVILTRPSGRTPVPEKESLAALAKHGATMVIFLGVHAIDKVVEELLEGGYPPDTPVAVVYRASWPDEKIIRGTLEDIAE 212 (254)
T ss_pred eeEEEEccccCCCCCchhHHHHHHhcCceeEeeehhhHHHHHHHHHhcCCCCCCCCEEEEEecCCCcccEEEeeHHHHHH
Confidence 125677788888877543 34554444433333321 1 11 11223334
Q ss_pred HHHHcCCceeecEEeec
Q 022946 227 HVREAGINVCSGGIIGL 243 (289)
Q Consensus 227 ~~~~~Gi~v~~~~i~Gl 243 (289)
..++.|+.-++.+++|-
T Consensus 213 kv~~~~i~rTAlIiVG~ 229 (254)
T COG2875 213 KVKEAGIRRTALIIVGD 229 (254)
T ss_pred HHHhcCceeEEEEEEcc
Confidence 46667777667777765
|
|
| >COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.13 E-value=6 Score=32.78 Aligned_cols=122 Identities=14% Similarity=0.044 Sum_probs=73.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCce--EEEeCCCCC--HHHHHHHHHcCCCe
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME--VCCTLGMLE--KHQAIELKKAGLTA 197 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~--i~~~~g~l~--~e~l~~L~~aG~~~ 197 (289)
.+.++.++.++.+.+. +.-+.. |-|+...+=++.++.+++...+ +....-+.| .=..+...++|.|.
T Consensus 13 ~~l~~Ai~~a~~v~~~-~diiEv--------GTpLik~eG~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd~ 83 (217)
T COG0269 13 LDLEEAIEIAEEVADY-VDIIEV--------GTPLIKAEGMRAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGADW 83 (217)
T ss_pred cCHHHHHHHHHHhhhc-ceEEEe--------CcHHHHHhhHHHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCCCE
Confidence 5788888888877765 443433 2366667777888888855322 333222222 33467888899999
Q ss_pred EecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeecc
Q 022946 198 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINA 271 (289)
Q Consensus 198 v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~ 271 (289)
+.+.-= ...+.+..+++.+++.|..+...++- ..+++ +-.+++.++ +++.+.++.
T Consensus 84 ~tV~g~------------A~~~TI~~~i~~A~~~~~~v~iDl~~--~~~~~---~~~~~l~~~--gvd~~~~H~ 138 (217)
T COG0269 84 VTVLGA------------ADDATIKKAIKVAKEYGKEVQIDLIG--VWDPE---QRAKWLKEL--GVDQVILHR 138 (217)
T ss_pred EEEEec------------CCHHHHHHHHHHHHHcCCeEEEEeec--CCCHH---HHHHHHHHh--CCCEEEEEe
Confidence 986431 35566777778888888776555542 22333 344455545 455554443
|
|
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=91.98 E-value=1.8 Score=36.61 Aligned_cols=72 Identities=14% Similarity=0.141 Sum_probs=50.5
Q ss_pred HHHHHHH-cCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch
Q 022946 130 AAQKAKE-AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 205 (289)
Q Consensus 130 ~~~~~~~-~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~ 205 (289)
.++.+.+ .|++++++..-+....+.+.++ ++++++. ..++++..-.|.-+.|.++.+.++|++++.+|-++.
T Consensus 36 ~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~----~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~ 109 (234)
T PRK13587 36 SIAYYSQFECVNRIHIVDLIGAKAQHAREF----DYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGI 109 (234)
T ss_pred HHHHHHhccCCCEEEEEECcccccCCcchH----HHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHh
Confidence 4455556 6899999976433222333343 3344433 446788888899999999999999999999887764
|
|
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=91.86 E-value=4.6 Score=33.91 Aligned_cols=73 Identities=18% Similarity=0.186 Sum_probs=48.3
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCc
Q 022946 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (289)
Q Consensus 128 ~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let 204 (289)
++.++.+.+.|++.+++..-+..-.+.+.++ ++++.+. ..++++....|.-+.+.++.+.++|++.+.++-..
T Consensus 33 ~~~a~~~~~~g~~~i~i~dl~~~~~~~~~n~----~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~ 106 (232)
T TIGR03572 33 VNAARIYNAKGADELIVLDIDASKRGREPLF----ELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSINTAA 106 (232)
T ss_pred HHHHHHHHHcCCCEEEEEeCCCcccCCCCCH----HHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhH
Confidence 4444555688999998865333222223343 3333333 34677888889889999999999999999887533
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=91.85 E-value=7.1 Score=34.87 Aligned_cols=137 Identities=17% Similarity=0.203 Sum_probs=75.0
Q ss_pred HHHHHcCCcEEEEecccCCCCC-CchhHHHHHHHHHHHHhcCceEEEe---------CCC--------------------
Q 022946 132 QKAKEAGSTRFCMGAAWRDTIG-RKTNFNQILEYVKDIRDMGMEVCCT---------LGM-------------------- 181 (289)
Q Consensus 132 ~~~~~~g~~~i~i~~~~~~~~g-e~~~~~~l~e~i~~ik~~~~~i~~~---------~g~-------------------- 181 (289)
+.+++.|+..|.+-- +-+|.. .-..+++.+++.+++|+.|+++... +|.
T Consensus 31 ~ilk~~G~N~vRlRv-wv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~~~v~ 109 (332)
T PF07745_consen 31 QILKDHGVNAVRLRV-WVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLAKAVY 109 (332)
T ss_dssp HHHHHTT--EEEEEE--SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHHHHHH
T ss_pred HHHHhcCCCeEEEEe-ccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHHHHHH
Confidence 344578988776632 223332 3457789999999999998886542 120
Q ss_pred -CCHHHHHHHHHcCC--CeEecCCCchHHHHhccCCCCCHHHHHHHH----HHHHHcCCceeecEEeec--CCCHHHHHH
Q 022946 182 -LEKHQAIELKKAGL--TAYNHNLDTSREFYSKIITTRSYDERLETL----KHVREAGINVCSGGIIGL--GEAEEDRVG 252 (289)
Q Consensus 182 -l~~e~l~~L~~aG~--~~v~i~let~~~~~~~i~~~~~~~~~~~~i----~~~~~~Gi~v~~~~i~Gl--get~ed~~~ 252 (289)
.+.+++..|+++|+ +.|.+|=|+-..++--......++...+.+ +.+|+.+- .+-+|+-+ +...+....
T Consensus 110 ~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p--~~kV~lH~~~~~~~~~~~~ 187 (332)
T PF07745_consen 110 DYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDP--NIKVMLHLANGGDNDLYRW 187 (332)
T ss_dssp HHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSS--TSEEEEEES-TTSHHHHHH
T ss_pred HHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCC--CCcEEEEECCCCchHHHHH
Confidence 15667789999997 578888876432222222234455444443 33444332 23345544 556666677
Q ss_pred HHHHHhcCCCCCCeeeecc
Q 022946 253 LLHTLATLPTHPESVPINA 271 (289)
Q Consensus 253 ~l~~l~~l~~~~~~v~i~~ 271 (289)
.++.+...+...|.++++.
T Consensus 188 ~f~~l~~~g~d~DviGlSy 206 (332)
T PF07745_consen 188 FFDNLKAAGVDFDVIGLSY 206 (332)
T ss_dssp HHHHHHHTTGG-SEEEEEE
T ss_pred HHHHHHhcCCCcceEEEec
Confidence 7777766543445555543
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A .... |
| >cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=91.70 E-value=5.8 Score=34.52 Aligned_cols=109 Identities=15% Similarity=0.089 Sum_probs=71.2
Q ss_pred CCHHHHHHHHHHHHHcC-----CcEEEEecccCCCCCCchhHHHHHHHHHHHHhc-CceEEEeCCCCCHHHHHHHHHcCC
Q 022946 122 MTKDAVMQAAQKAKEAG-----STRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGL 195 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g-----~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~-~~~i~~~~g~l~~e~l~~L~~aG~ 195 (289)
.+.++=++.++.+.+.| +++|-+.+ .. +...+.+.++++. .. ...+... ...+.+.++...++|+
T Consensus 18 ~~~~~Kv~i~~~L~~~G~~~~~v~~IE~~s-----~~-~~d~~~v~~~~~~--~~~~~~v~~~-~r~~~~die~A~~~g~ 88 (279)
T cd07947 18 YTVEQIVKIYDYLHELGGGSGVIRQTEFFL-----YT-EKDREAVEACLDR--GYKFPEVTGW-IRANKEDLKLVKEMGL 88 (279)
T ss_pred CCHHHHHHHHHHHHHcCCCCCccceEEecC-----cC-hHHHHHHHHHHHc--CCCCCEEEEE-ecCCHHHHHHHHHcCc
Confidence 38899899999999999 99987632 12 2233444444421 11 1234333 4456777899999999
Q ss_pred CeEecCCCchHH-HHhccCCC--CCHHHHHHHHHHHHHcCCceeecE
Q 022946 196 TAYNHNLDTSRE-FYSKIITT--RSYDERLETLKHVREAGINVCSGG 239 (289)
Q Consensus 196 ~~v~i~let~~~-~~~~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~ 239 (289)
+.+.+.+-+.+. ...+++.. ...+.+.+.++.+++.|+.+..++
T Consensus 89 ~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 89 KETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred CEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 999987766533 33444432 256777788888999998865444
|
Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with |
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=91.59 E-value=2.9 Score=34.47 Aligned_cols=68 Identities=15% Similarity=0.113 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCC-CCCHHHHHHHHHcCCCeEe
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG-MLEKHQAIELKKAGLTAYN 199 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g-~l~~e~l~~L~~aG~~~v~ 199 (289)
.+.++..+.++.+.+.|++.+.++-. .| ..++.++.+++..-++.+-.| .++.+.++...++|.+.+-
T Consensus 13 ~~~~~a~~ia~al~~gGi~~iEit~~------tp----~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~Fiv 81 (201)
T PRK06015 13 DDVEHAVPLARALAAGGLPAIEITLR------TP----AALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIV 81 (201)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCC------Cc----cHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEE
Confidence 58899999999999999998877641 12 234555555532224444445 4899999999999997554
|
|
| >COG3589 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.48 E-value=9.6 Score=33.78 Aligned_cols=149 Identities=12% Similarity=0.133 Sum_probs=88.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCC-chhHHHHHHHHHHHHhcCceEEEe--CCC-----CCHHHHHHHHHcC
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR-KTNFNQILEYVKDIRDMGMEVCCT--LGM-----LEKHQAIELKKAG 194 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge-~~~~~~l~e~i~~ik~~~~~i~~~--~g~-----l~~e~l~~L~~aG 194 (289)
+.++-.+.++.+.++|+++|+.+-. .+.++ ...+..+.++++.+++.|+.+.+. +.. .+...+..+.+.|
T Consensus 14 ~~~~~~~Yi~~~~~~Gf~~IFtsl~--~~~~~~~~~~~~~~ell~~Anklg~~vivDvnPsil~~l~~S~~~l~~f~e~G 91 (360)
T COG3589 14 PKEKDIAYIDRMHKYGFKRIFTSLL--IPEEDAELYFHRFKELLKEANKLGLRVIVDVNPSILKELNISLDNLSRFQELG 91 (360)
T ss_pred cchhHHHHHHHHHHcCccceeeecc--cCCchHHHHHHHHHHHHHHHHhcCcEEEEEcCHHHHhhcCCChHHHHHHHHhh
Confidence 4467788888899999999865331 11111 146788999999999999886544 322 3566789999999
Q ss_pred CCeEecCCCch-HHHHhccCCC----CCHHHHHHHHHHHHHc--C---CceeecEEeec--CCCHHHHHHHHHHHhcCCC
Q 022946 195 LTAYNHNLDTS-REFYSKIITT----RSYDERLETLKHVREA--G---INVCSGGIIGL--GEAEEDRVGLLHTLATLPT 262 (289)
Q Consensus 195 ~~~v~i~let~-~~~~~~i~~~----~~~~~~~~~i~~~~~~--G---i~v~~~~i~Gl--get~ed~~~~l~~l~~l~~ 262 (289)
++.+-+..-.. ++.-.-...+ -+....-+-+..+... . +.-|.++-.-. |-+.+.+.+.-+++.+.
T Consensus 92 ~~glRlD~gfS~eei~~ms~~~lkieLN~S~it~~l~~l~~~~an~~nl~~cHNyYPr~yTGLS~e~f~~kn~~fk~~-- 169 (360)
T COG3589 92 VDGLRLDYGFSGEEIAEMSKNPLKIELNASTITELLDSLLAYKANLENLEGCHNYYPRPYTGLSREHFKRKNEIFKEY-- 169 (360)
T ss_pred hhheeecccCCHHHHHHHhcCCeEEEEchhhhHHHHHHHHHhccchhhhhhcccccCCcccCccHHHHHHHHHHHHhc--
Confidence 98887654443 3322221111 1122222233333222 1 22333333322 66889999999998877
Q ss_pred CCCeeeeccceecCCC
Q 022946 263 HPESVPINALLAVKGT 278 (289)
Q Consensus 263 ~~~~v~i~~~~p~pgT 278 (289)
++ ....|++.++.
T Consensus 170 ~i---~t~AFis~~~~ 182 (360)
T COG3589 170 NI---KTAAFISSDGA 182 (360)
T ss_pred CC---ceEEEEecCCc
Confidence 33 34566666665
|
|
| >COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=91.42 E-value=3.6 Score=31.80 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCce-EE-EeCCCCCHHHHHHHHHcCCCeEe
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME-VC-CTLGMLEKHQAIELKKAGLTAYN 199 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~-i~-~~~g~l~~e~l~~L~~aG~~~v~ 199 (289)
.+++|+++.+ .+..+.-|.+++- .| .+...+.++++.+++.|.+ +. .-.|.+..+.+..|++.|++++.
T Consensus 50 ~tp~e~v~aA---~~~dv~vIgvSsl----~g--~h~~l~~~lve~lre~G~~~i~v~~GGvip~~d~~~l~~~G~~~if 120 (143)
T COG2185 50 QTPEEAVRAA---VEEDVDVIGVSSL----DG--GHLTLVPGLVEALREAGVEDILVVVGGVIPPGDYQELKEMGVDRIF 120 (143)
T ss_pred CCHHHHHHHH---HhcCCCEEEEEec----cc--hHHHHHHHHHHHHHHhCCcceEEeecCccCchhHHHHHHhCcceee
Confidence 4788877765 4556666766551 12 1555666677777777765 33 44677888999999999999886
Q ss_pred c
Q 022946 200 H 200 (289)
Q Consensus 200 i 200 (289)
.
T Consensus 121 ~ 121 (143)
T COG2185 121 G 121 (143)
T ss_pred C
Confidence 4
|
|
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=91.34 E-value=2.3 Score=36.11 Aligned_cols=76 Identities=13% Similarity=0.001 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch
Q 022946 126 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 205 (289)
Q Consensus 126 ei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~ 205 (289)
+.++.++.+.+.|++++++..-+....|.+.+.+-+.++.+. . .++..-.|.-+.+.++.+.++|++++.++-.+.
T Consensus 31 dP~~~A~~~~~~ga~~lhivDLd~a~~g~~~n~~~i~~i~~~---~-~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~ 106 (241)
T PRK14114 31 DPAELVEKLIEEGFTLIHVVDLSKAIENSVENLPVLEKLSEF---A-EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVL 106 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCcccCCcchHHHHHHHHhh---c-CcEEEecCCCCHHHHHHHHHCCCCEEEECchhh
Confidence 335556666789999999976432223444443333333332 2 466777888899999999999999998877654
|
|
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=91.31 E-value=3.6 Score=34.01 Aligned_cols=67 Identities=16% Similarity=0.115 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCC-CCCHHHHHHHHHcCCCeE
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG-MLEKHQAIELKKAGLTAY 198 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g-~l~~e~l~~L~~aG~~~v 198 (289)
.+.++..+.++.+.+.|++.+.+.-. . +...+.++.+++..-++.+-.| .++.+.++...++|.+.+
T Consensus 17 ~~~e~a~~~~~al~~~Gi~~iEit~~------t----~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fi 84 (204)
T TIGR01182 17 DDVDDALPLAKALIEGGLRVLEVTLR------T----PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFI 84 (204)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCC------C----ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEE
Confidence 58899999999999999998877641 1 2344555555532224444445 489999999999999876
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen [] | Back alignment and domain information |
|---|
Probab=91.22 E-value=4.6 Score=36.03 Aligned_cols=112 Identities=18% Similarity=0.146 Sum_probs=56.7
Q ss_pred HHHHHHHcCCcEEEEecccCCCCCCchh-----HHHHHHHHHHHHhcCc-eEEEe-CCCCCHHHHHHHHHcCCCeEecCC
Q 022946 130 AAQKAKEAGSTRFCMGAAWRDTIGRKTN-----FNQILEYVKDIRDMGM-EVCCT-LGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 130 ~~~~~~~~g~~~i~i~~~~~~~~ge~~~-----~~~l~e~i~~ik~~~~-~i~~~-~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
.++...+.|++-+.+......... |.. .+.+.++++.+++.+. .+..+ .|. ....++.|+++|++.+++.-
T Consensus 187 ~~~~~~~~G~d~i~~~d~~~~~is-p~~f~e~~~P~~k~i~~~i~~~g~~~~~lH~cG~-~~~~~~~l~~~g~d~~~~~~ 264 (343)
T PF01208_consen 187 YAKAQIEAGADGIFIFDSSGSLIS-PEMFEEFILPYLKKIIDAIKEAGKDPVILHICGN-TTPILDDLADLGADVLSVDE 264 (343)
T ss_dssp HHHHHHHTT-SEEEEEETTGGGS--HHHHHHHTHHHHHHHHHHHHHHETE-EEEEETTH-G-GGHHHHHTSS-SEEEE-T
T ss_pred HHHHHHHhCCCcccccccccCCCC-HHHHHHHHHHHHHHHHHHHHHhCCCceEEEECCc-hHHHHHHHHhcCCCEEEEcC
Confidence 334445678888777553322222 322 2556667777777665 44333 453 34589999999999988753
Q ss_pred Cch-HHHHhccCC--------------CCCHHHHHHHHHHHHHcCCceeecEEeec
Q 022946 203 DTS-REFYSKIIT--------------TRSYDERLETLKHVREAGINVCSGGIIGL 243 (289)
Q Consensus 203 et~-~~~~~~i~~--------------~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl 243 (289)
... .+..+.+.+ ..+.+++.+.++.+.+.+..-..++|+|.
T Consensus 265 ~~~~~~~~~~~~~~~~l~Gni~~~~~l~gt~eei~~~v~~~i~~~~~~~~gfIl~~ 320 (343)
T PF01208_consen 265 KVDLAEAKRKLGDKIVLMGNIDPVSLLFGTPEEIEEEVKRLIEEGLAGGGGFILSP 320 (343)
T ss_dssp TS-HHHHHHHHTTSSEEEEEB-G-GGGGS-HHHHHHHHHHHHHHTHCTSSSEEBEB
T ss_pred CCCHHHHHHHhCCCeEEECCCCccccccCCHHHHHHHHHHHHHHhcCCCCCEEEeC
Confidence 332 333333211 02446666666665553333334444443
|
URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A .... |
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=90.99 E-value=8.9 Score=32.54 Aligned_cols=78 Identities=19% Similarity=0.282 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhH--------------HHHHHHHHHHHh-cCceEEE--e-CCCC--
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNF--------------NQILEYVKDIRD-MGMEVCC--T-LGML-- 182 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~--------------~~l~e~i~~ik~-~~~~i~~--~-~g~l-- 182 (289)
+.+...+.++.+.+.|++.+.+.--..+|...-... +...+.++.+++ ..+.+.. . +-.+
T Consensus 12 ~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~ 91 (242)
T cd04724 12 DLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPILQY 91 (242)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHHHh
Confidence 668889999999999999998862111112110122 267788888874 3444322 2 1111
Q ss_pred -CHHHHHHHHHcCCCeEec
Q 022946 183 -EKHQAIELKKAGLTAYNH 200 (289)
Q Consensus 183 -~~e~l~~L~~aG~~~v~i 200 (289)
.++.++.++++|++.+.+
T Consensus 92 G~~~fi~~~~~aG~~giii 110 (242)
T cd04724 92 GLERFLRDAKEAGVDGLII 110 (242)
T ss_pred CHHHHHHHHHHCCCcEEEE
Confidence 166789999999999887
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain | Back alignment and domain information |
|---|
Probab=90.97 E-value=3.3 Score=31.63 Aligned_cols=69 Identities=17% Similarity=0.195 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCc---eEEEeCCCCCHHHHHHHHHcCCCeE
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGM---EVCCTLGMLEKHQAIELKKAGLTAY 198 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~---~i~~~~g~l~~e~l~~L~~aG~~~v 198 (289)
.++|++++.+. +.+.+-+.+++-. ....+.+.++++.+++.+. .+.. .|....+..++|+++|++.+
T Consensus 40 ~s~e~~v~aa~---e~~adii~iSsl~------~~~~~~~~~~~~~L~~~g~~~i~viv-GG~~~~~~~~~l~~~Gvd~~ 109 (132)
T TIGR00640 40 QTPEEIARQAV---EADVHVVGVSSLA------GGHLTLVPALRKELDKLGRPDILVVV-GGVIPPQDFDELKEMGVAEI 109 (132)
T ss_pred CCHHHHHHHHH---HcCCCEEEEcCch------hhhHHHHHHHHHHHHhcCCCCCEEEE-eCCCChHhHHHHHHCCCCEE
Confidence 57888777654 6688888887622 1245566666777775543 3333 55567778899999999887
Q ss_pred ec
Q 022946 199 NH 200 (289)
Q Consensus 199 ~i 200 (289)
..
T Consensus 110 ~~ 111 (132)
T TIGR00640 110 FG 111 (132)
T ss_pred EC
Confidence 53
|
Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2. |
| >PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART) | Back alignment and domain information |
|---|
Probab=90.95 E-value=0.65 Score=39.64 Aligned_cols=97 Identities=21% Similarity=0.255 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEec--CCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCce
Q 022946 158 FNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNH--NLDTSREFYSKIITTRSYDERLETLKHVREAGINV 235 (289)
Q Consensus 158 ~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i--~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v 235 (289)
++.=+++++..++.++ .+....++.+..++|.+||.|.+.. |+-+.-.+ ...+..+.++..+.++.+.++-..+
T Consensus 136 y~~EVemi~~A~~~gl--~T~~yvf~~e~A~~M~~AGaDiiv~H~GlT~gG~~--Ga~~~~sl~~a~~~~~~i~~aa~~v 211 (268)
T PF09370_consen 136 YDREVEMIRKAHEKGL--FTTAYVFNEEQARAMAEAGADIIVAHMGLTTGGSI--GAKTALSLEEAAERIQEIFDAARAV 211 (268)
T ss_dssp HHHHHHHHHHHHHTT---EE--EE-SHHHHHHHHHHT-SEEEEE-SS------------S--HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCC--eeeeeecCHHHHHHHHHcCCCEEEecCCccCCCCc--CccccCCHHHHHHHHHHHHHHHHHh
Confidence 3444556666666665 2334458999999999999998864 55433111 1123457888888888877765555
Q ss_pred eecEEe----ecCCCHHHHHHHHHHHh
Q 022946 236 CSGGII----GLGEAEEDRVGLLHTLA 258 (289)
Q Consensus 236 ~~~~i~----Glget~ed~~~~l~~l~ 258 (289)
+.++|+ |--.+++|....++...
T Consensus 212 ~~dii~l~hGGPI~~p~D~~~~l~~t~ 238 (268)
T PF09370_consen 212 NPDIIVLCHGGPIATPEDAQYVLRNTK 238 (268)
T ss_dssp -TT-EEEEECTTB-SHHHHHHHHHH-T
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHhcCC
Confidence 555444 22568888887777654
|
Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C. |
| >PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=90.87 E-value=8.2 Score=32.93 Aligned_cols=106 Identities=20% Similarity=0.311 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhH----HHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCe
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNF----NQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTA 197 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~----~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~ 197 (289)
+.|.+++.++.+++.|+. +.+.|.+. +--.|..+ .+-++.++.++ +.|+.+.++. .+.+.++.+.+ .+|.
T Consensus 27 s~e~~~~~a~~~~~~g~~-~~r~g~~k-pRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~Tev--~d~~~v~~~~e-~vdi 101 (250)
T PRK13397 27 SYDHIRLAASSAKKLGYN-YFRGGAYK-PRTSAASFQGLGLQGIRYLHEVCQEFGLLSVSEI--MSERQLEEAYD-YLDV 101 (250)
T ss_pred CHHHHHHHHHHHHHcCCC-EEEecccC-CCCCCcccCCCCHHHHHHHHHHHHHcCCCEEEee--CCHHHHHHHHh-cCCE
Confidence 678899999999999985 44554432 21112111 22444444444 7899887754 67888999988 5999
Q ss_pred EecC-CCch-HHHHhccCC---------C--CCHHHHHHHHHHHHHcCC
Q 022946 198 YNHN-LDTS-REFYSKIIT---------T--RSYDERLETLKHVREAGI 233 (289)
Q Consensus 198 v~i~-let~-~~~~~~i~~---------~--~~~~~~~~~i~~~~~~Gi 233 (289)
+.++ -+.. -++++.+.+ + .+.++|+.+++.+.+.|-
T Consensus 102 lqIgs~~~~n~~LL~~va~tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn 150 (250)
T PRK13397 102 IQVGARNMQNFEFLKTLSHIDKPILFKRGLMATIEEYLGALSYLQDTGK 150 (250)
T ss_pred EEECcccccCHHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence 9985 3443 555555542 2 268999999999999886
|
|
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=90.71 E-value=1.7 Score=37.15 Aligned_cols=65 Identities=15% Similarity=0.041 Sum_probs=47.8
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecCC
Q 022946 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 128 ~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
++.++...+.|++.++++. .|++ +.+-+.++++. .++++....|.-+ +.++.+.++|++++.+|=
T Consensus 41 ~~~A~~~~~~Ga~~lHvVD-----Lg~~-n~~~i~~i~~~---~~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS 105 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIM-----LGPN-NDDAAKEALHA---YPGGLQVGGGIND-TNAQEWLDEGASHVIVTS 105 (253)
T ss_pred HHHHHHHHHcCCCEEEEEE-----CCCC-cHHHHHHHHHh---CCCCEEEeCCcCH-HHHHHHHHcCCCEEEECc
Confidence 4445567789999999986 2555 65555555443 4677877888765 999999999999999864
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >TIGR00284 dihydropteroate synthase-related protein | Back alignment and domain information |
|---|
Probab=90.70 E-value=7.8 Score=36.64 Aligned_cols=124 Identities=18% Similarity=0.174 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc-CceEEEeCCCCCHHHHHHHHHcCCCeEecCCC
Q 022946 125 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLD 203 (289)
Q Consensus 125 eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~-~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~le 203 (289)
+++.+.++...+.|++-|-++++.. .| ..+++...++.+++. ++.+ +..+.+.+.+++-.++|.+.|+ ++.
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st----~p-~~~~v~~~V~~l~~~~~~pI--SIDT~~~~v~eaAL~aGAdiIN-sVs 236 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSF----DD-DPDVVKEKVKTALDALDSPV--IADTPTLDELYEALKAGASGVI-MPD 236 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcC----CC-cHHHHHHHHHHHHhhCCCcE--EEeCCCHHHHHHHHHcCCCEEE-ECC
Confidence 8899999999999999888866432 22 334678888877754 4443 4566788888888888998776 333
Q ss_pred ch--HHHHhccC---------C---CCCHHHHHHHHHHHHHcCC-ceeecEEeecCCCHHHHHHHHHHHh
Q 022946 204 TS--REFYSKII---------T---TRSYDERLETLKHVREAGI-NVCSGGIIGLGEAEEDRVGLLHTLA 258 (289)
Q Consensus 204 t~--~~~~~~i~---------~---~~~~~~~~~~i~~~~~~Gi-~v~~~~i~Glget~ed~~~~l~~l~ 258 (289)
.. +++.+.+. + ...++...+.++.+.+.|+ ++..+-++|. ...++.+.+..++
T Consensus 237 ~~~~d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~~ie~a~~~Gi~~IIlDPglg~--~~~~l~~sL~~l~ 304 (499)
T TIGR00284 237 VENAVELASEKKLPEDAFVVVPGNQPTNYEELAKAVKKLRTSGYSKVAADPSLSP--PLLGLLESIIRFR 304 (499)
T ss_pred ccchhHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHHHHCCCCcEEEeCCCCc--chHHHHHHHHHHH
Confidence 32 43322111 1 2346778889999999999 4555555554 2334666666665
|
This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803. |
| >cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=90.68 E-value=11 Score=32.94 Aligned_cols=133 Identities=9% Similarity=0.042 Sum_probs=74.7
Q ss_pred cCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc-----CceEEEeCCCCCHHHHHHHHHc
Q 022946 119 QKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-----GMEVCCTLGMLEKHQAIELKKA 193 (289)
Q Consensus 119 ~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~-----~~~i~~~~g~l~~e~l~~L~~a 193 (289)
...++.++=++.++.+.+.|++.+.++. |.-. +.-.+.++.+.+. +.++.. ......+.++.-.++
T Consensus 17 g~~~s~~~Ki~ia~~L~~~Gv~~IE~gf----P~~~----~~e~e~~~~i~~~~~~~~~~~~~a-l~r~~~~die~a~~~ 87 (284)
T cd07942 17 AEPMSVEQKLRFFKLLVKIGFKEIEVGF----PSAS----QTDFDFVRELIEEDLIPDDVTIQV-LTQAREDLIERTFEA 87 (284)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeC----CCCC----HHHHHHHHHHHHccCCCCCCEEEE-EcCCChhhHHHHHHH
Confidence 3448999999999999999999997752 2211 2223444444322 333322 222234435666665
Q ss_pred --CCC--eEecCCCchH-HHHhccCCC--CCHHHHHHHHHHHHHcCCc-eeecEEeec-C-----CCHHHHHHHHHHHhc
Q 022946 194 --GLT--AYNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGIN-VCSGGIIGL-G-----EAEEDRVGLLHTLAT 259 (289)
Q Consensus 194 --G~~--~v~i~let~~-~~~~~i~~~--~~~~~~~~~i~~~~~~Gi~-v~~~~i~Gl-g-----et~ed~~~~l~~l~~ 259 (289)
|++ .+.+.+-+++ -...+++.+ ...+.+.+.++.+++.|+. +.+.+-+-+ + -..+.+.+.++.+.+
T Consensus 88 ~~~~~~~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~g~~~~~~~~~~~~~~EDasr~~~~~l~~~~~~~~~ 167 (284)
T cd07942 88 LRGAKKAIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKELAAKYPETDWRFEYSPESFSDTELDFALEVCEAVID 167 (284)
T ss_pred hCCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceEEEEECCccCCCCCHHHHHHHHHHHHH
Confidence 665 5776666653 233344432 2456677788888998875 222333333 3 234556666666654
Q ss_pred C
Q 022946 260 L 260 (289)
Q Consensus 260 l 260 (289)
.
T Consensus 168 ~ 168 (284)
T cd07942 168 V 168 (284)
T ss_pred h
Confidence 4
|
Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong |
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=90.47 E-value=8.9 Score=32.14 Aligned_cols=72 Identities=11% Similarity=0.069 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCC-CCCHHHHHHHHHcCCCeEe
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG-MLEKHQAIELKKAGLTAYN 199 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g-~l~~e~l~~L~~aG~~~v~ 199 (289)
.+.++..+.++.+.+.|++.+.++-. .|...+.+.++.+.+++...++.+-.| .++.+.++...++|.+.+-
T Consensus 24 ~~~~~a~~~~~al~~gGi~~iEiT~~------tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiV 96 (222)
T PRK07114 24 ADVEVAKKVIKACYDGGARVFEFTNR------GDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIV 96 (222)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCC------CCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEE
Confidence 58899999999999999998877541 133444454444445433334545555 4899999999999997554
|
|
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.44 E-value=2.6 Score=35.25 Aligned_cols=78 Identities=14% Similarity=0.167 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecC
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 201 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~ 201 (289)
..-..++.++...+.|+++++|..-.-. +...+-+++.+++.. ...+++++-.|.-+.+.++++..+|.|-|+++
T Consensus 28 d~GDpVelA~~Y~e~GADElvFlDItAs----~~gr~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aGADKVSIN 103 (256)
T COG0107 28 DAGDPVELAKRYNEEGADELVFLDITAS----SEGRETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLRAGADKVSIN 103 (256)
T ss_pred hcCChHHHHHHHHHcCCCeEEEEecccc----cccchhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHHcCCCeeeeC
Confidence 3445577778888999999998652222 233456677777665 56888888888889999999999999988886
Q ss_pred CCc
Q 022946 202 LDT 204 (289)
Q Consensus 202 let 204 (289)
-.+
T Consensus 104 saA 106 (256)
T COG0107 104 SAA 106 (256)
T ss_pred hhH
Confidence 544
|
|
| >TIGR03586 PseI pseudaminic acid synthase | Back alignment and domain information |
|---|
Probab=90.40 E-value=13 Score=33.24 Aligned_cols=109 Identities=18% Similarity=0.287 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCC----------------C-CCc---------hhHHHHHHHHHHHHhcCceEE
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDT----------------I-GRK---------TNFNQILEYVKDIRDMGMEVC 176 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~----------------~-ge~---------~~~~~l~e~i~~ik~~~~~i~ 176 (289)
+.+...+.++.+.+.|.+-|-|+.-.... . ++. ...++..++.+..++.|+.+.
T Consensus 15 ~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~~~ 94 (327)
T TIGR03586 15 SLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELGLTIF 94 (327)
T ss_pred hHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhCCcEE
Confidence 67888888888889998877765421000 0 000 012333444444556788887
Q ss_pred EeCCCCCHHHHHHHHHcCCCeEecC-CCch-HHHHhccCC---------C-CCHHHHHHHHHHHHHcCC
Q 022946 177 CTLGMLEKHQAIELKKAGLTAYNHN-LDTS-REFYSKIIT---------T-RSYDERLETLKHVREAGI 233 (289)
Q Consensus 177 ~~~g~l~~e~l~~L~~aG~~~v~i~-let~-~~~~~~i~~---------~-~~~~~~~~~i~~~~~~Gi 233 (289)
++. ++.+.++.|.+.|++.+.++ -+.. -.+++.+.. + .+.+++..+++.+.+.|-
T Consensus 95 stp--fd~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvilstG~~t~~Ei~~Av~~i~~~g~ 161 (327)
T TIGR03586 95 SSP--FDETAVDFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMSTGIATLEEIQEAVEACREAGC 161 (327)
T ss_pred Ecc--CCHHHHHHHHHcCCCEEEECCccccCHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHCCC
Confidence 765 67888999999999988874 3433 334443322 1 256777777777776665
|
|
| >KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=90.35 E-value=2.6 Score=38.54 Aligned_cols=102 Identities=15% Similarity=0.166 Sum_probs=60.7
Q ss_pred CCchhHHHHHHHHHHHHhcCce-EEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCC---HHHHHHHHHH
Q 022946 153 GRKTNFNQILEYVKDIRDMGME-VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRS---YDERLETLKH 227 (289)
Q Consensus 153 ge~~~~~~l~e~i~~ik~~~~~-i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~---~~~~~~~i~~ 227 (289)
|+|..+..+-..++.+.+..+. ..++|... .+.+..++. +..+.++++.. ...+.++.++-. ++..++.++.
T Consensus 363 gepi~yp~in~f~k~lH~k~issflvtnaq~-pe~~rnvk~--vtqlyvsvda~Tktslk~idrPlfkdFwEr~~d~l~~ 439 (601)
T KOG1160|consen 363 GEPIMYPEINPFAKLLHQKLISSFLVTNAQF-PEDIRNVKP--VTQLYVSVDASTKTSLKKIDRPLFKDFWERFLDSLKA 439 (601)
T ss_pred cccccchhhhHHHHHHHhccchHHhcccccC-hHHHhchhh--hheeEEEEeecchhhhcCCCCchHHHHHHHHHHHHHH
Confidence 4566667777777777655544 33445433 555556665 57888999998 888888876532 4556666666
Q ss_pred HHHc-CCceeecEEeecCCCHHHHHHHHHHHh
Q 022946 228 VREA-GINVCSGGIIGLGEAEEDRVGLLHTLA 258 (289)
Q Consensus 228 ~~~~-Gi~v~~~~i~Glget~ed~~~~l~~l~ 258 (289)
+++. ...+.-.-++|.+ +-+|+.+-.+.+.
T Consensus 440 lk~K~qrtvyRlTlVkg~-n~dd~~Ayfnlv~ 470 (601)
T KOG1160|consen 440 LKKKQQRTVYRLTLVKGW-NSDDLPAYFNLVS 470 (601)
T ss_pred HHHhhcceEEEEEEeccc-cccccHHHHHHHh
Confidence 6653 3333333455543 3345555555543
|
|
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=90.00 E-value=8.3 Score=32.51 Aligned_cols=74 Identities=15% Similarity=0.093 Sum_probs=49.3
Q ss_pred HHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCc
Q 022946 127 VMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (289)
Q Consensus 127 i~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let 204 (289)
.++.++.+.+.|++.+.+..-+.... ......+.++.+. ..++.+....|.-+.+.++.+.++|++.+.++-..
T Consensus 34 ~~e~a~~~~~~G~~~l~i~dl~~~~~----~~~~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~ 108 (241)
T PRK13585 34 PVEVAKRWVDAGAETLHLVDLDGAFE----GERKNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLDLGVDRVILGTAA 108 (241)
T ss_pred HHHHHHHHHHcCCCEEEEEechhhhc----CCcccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHH
Confidence 34455556678999998865221111 2223344444443 45778888888889999999999999999887644
|
|
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=89.89 E-value=9.7 Score=32.65 Aligned_cols=72 Identities=17% Similarity=0.219 Sum_probs=48.8
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCC
Q 022946 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLD 203 (289)
Q Consensus 128 ~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~le 203 (289)
++.++.+.+.|++++++..-+..-.+...++ ++++.+. ..++++....|.-+.+.++++..+|++.+.+|-.
T Consensus 33 ~~~a~~~~~~g~~~l~i~Dl~~~~~~~~~n~----~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~ 105 (258)
T PRK01033 33 INAVRIFNEKEVDELIVLDIDASKRGSEPNY----ELIENLASECFMPLCYGGGIKTLEQAKKIFSLGVEKVSINTA 105 (258)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCcCCCcccH----HHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCCCCEEEEChH
Confidence 4455567789999998875433212222333 3344433 3467777788888899999999999999988853
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=89.86 E-value=3 Score=35.67 Aligned_cols=74 Identities=15% Similarity=0.167 Sum_probs=51.6
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch
Q 022946 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 205 (289)
Q Consensus 128 ~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~ 205 (289)
++.++.+.+.|++.+++..-+....+ ...-+++++.+. ..++++....|.-+.+.++.+..+|++.+.+|-...
T Consensus 33 ~~~a~~~~~~G~~~l~v~Dl~~~~~~----~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~ 107 (254)
T TIGR00735 33 VELAQRYDEEGADELVFLDITASSEG----RTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAV 107 (254)
T ss_pred HHHHHHHHHcCCCEEEEEcCCccccc----ChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHh
Confidence 44445556789999988753322112 223455555555 346788888999999999999999999999886553
|
|
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=89.78 E-value=4.9 Score=35.73 Aligned_cols=100 Identities=15% Similarity=0.111 Sum_probs=59.8
Q ss_pred HHHHHHHHc--CCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCC-CCCHHHHHHHHHcCCCeEecCCCch
Q 022946 129 QAAQKAKEA--GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG-MLEKHQAIELKKAGLTAYNHNLDTS 205 (289)
Q Consensus 129 ~~~~~~~~~--g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g-~l~~e~l~~L~~aG~~~v~i~let~ 205 (289)
+.++.+.+. +++.+++-..- | +-..+++.++.+|+......+-.| ..+.+..+.|.++|+|.|.+|+-..
T Consensus 110 er~~~L~~a~~~~d~iviD~Ah----G---hs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpG 182 (343)
T TIGR01305 110 EKMTSILEAVPQLKFICLDVAN----G---YSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPG 182 (343)
T ss_pred HHHHHHHhcCCCCCEEEEECCC----C---cHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCC
Confidence 334444554 57888774311 2 557899999999965332222334 6899999999999999998885432
Q ss_pred -HHHHhccCC-C-CCHHHHHHHHHHHHHcCCce
Q 022946 206 -REFYSKIIT-T-RSYDERLETLKHVREAGINV 235 (289)
Q Consensus 206 -~~~~~~i~~-~-~~~~~~~~~i~~~~~~Gi~v 235 (289)
-=.-+.+.. + .....+.+..+.+++.|+++
T Consensus 183 SicttR~~~Gvg~pqltAv~~~a~aa~~~~v~V 215 (343)
T TIGR01305 183 SVCTTRTKTGVGYPQLSAVIECADAAHGLKGHI 215 (343)
T ss_pred CcccCceeCCCCcCHHHHHHHHHHHhccCCCeE
Confidence 111111111 1 24555566666666656554
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=89.77 E-value=1 Score=37.96 Aligned_cols=77 Identities=19% Similarity=0.184 Sum_probs=51.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEec
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 200 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i 200 (289)
-+|.+ .++.+.+.|++++++..-+....|. ..-.++++.+. ..++++....|.-+.+.++++.++|++++.+
T Consensus 29 ~dP~~---~a~~~~~~g~~~l~ivDLdaa~~g~----~~n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvi 101 (229)
T PF00977_consen 29 GDPVE---VAKAFNEQGADELHIVDLDAAKEGR----GSNLELIKEIAKETGIPIQVGGGIRSIEDAERLLDAGADRVVI 101 (229)
T ss_dssp CCHHH---HHHHHHHTT-SEEEEEEHHHHCCTH----HHHHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT-SEEEE
T ss_pred cCHHH---HHHHHHHcCCCEEEEEEccCcccCc----hhHHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhCCCEEEe
Confidence 35544 4445568899999997632211122 33445555555 4578898899999999999999999999998
Q ss_pred CCCch
Q 022946 201 NLDTS 205 (289)
Q Consensus 201 ~let~ 205 (289)
+-++.
T Consensus 102 gt~~~ 106 (229)
T PF00977_consen 102 GTEAL 106 (229)
T ss_dssp SHHHH
T ss_pred ChHHh
Confidence 87654
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=89.71 E-value=4.1 Score=34.39 Aligned_cols=75 Identities=19% Similarity=0.071 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-cCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCc
Q 022946 126 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (289)
Q Consensus 126 ei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let 204 (289)
+.++.++.+.+.|++++++..-+... +.+.+. ++++++.+ ...++..-.|.-+.+.++.+.++|++++.+|-++
T Consensus 31 dP~~~a~~~~~~ga~~lhivDLd~a~-~~~~n~----~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a 105 (232)
T PRK13586 31 NPIEIASKLYNEGYTRIHVVDLDAAE-GVGNNE----MYIKEISKIGFDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIV 105 (232)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCcC-CCcchH----HHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHCCCCEEEECchh
Confidence 34555666778999999997643222 333333 55555543 3336777788889999999999999999988766
Q ss_pred h
Q 022946 205 S 205 (289)
Q Consensus 205 ~ 205 (289)
.
T Consensus 106 ~ 106 (232)
T PRK13586 106 F 106 (232)
T ss_pred h
Confidence 4
|
|
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.57 E-value=5.2 Score=37.68 Aligned_cols=120 Identities=18% Similarity=0.225 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcC--ceEEEeCCCCCHHHHHHHHHcCCCeEecCC
Q 022946 125 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG--MEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 125 eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~--~~i~~~~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
+++.+.++.+.+.|++.+++-... | +-..+.++++.+|+.. +.+..- ...+.+..+.|.++|+|.|.+|+
T Consensus 226 ~~~~~~a~~Lv~aGvd~i~~D~a~----~---~~~~~~~~i~~ik~~~p~~~v~ag-nv~t~~~a~~l~~aGad~v~vgi 297 (479)
T PRK07807 226 GDVAAKARALLEAGVDVLVVDTAH----G---HQEKMLEALRAVRALDPGVPIVAG-NVVTAEGTRDLVEAGADIVKVGV 297 (479)
T ss_pred hhHHHHHHHHHHhCCCEEEEeccC----C---ccHHHHHHHHHHHHHCCCCeEEee-ccCCHHHHHHHHHcCCCEEEECc
Confidence 456677788888999988774321 2 2467889999998653 444331 24679999999999999999887
Q ss_pred Cch-HHHHhccCC--CCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHH
Q 022946 203 DTS-REFYSKIIT--TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLH 255 (289)
Q Consensus 203 et~-~~~~~~i~~--~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~ 255 (289)
-+. ==+.+.+.. ...+..+.+..+.+++.|+++.+. |=-.+..|+...+.
T Consensus 298 g~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~---ggi~~~~~~~~al~ 350 (479)
T PRK07807 298 GPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWAD---GGVRHPRDVALALA 350 (479)
T ss_pred cCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEec---CCCCCHHHHHHHHH
Confidence 662 111111111 124556666666666777664321 22345666665554
|
|
| >PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function | Back alignment and domain information |
|---|
Probab=89.47 E-value=4.7 Score=34.94 Aligned_cols=112 Identities=20% Similarity=0.147 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCc-hhHHHHHHHHHHHHhc--CceEEEeCCC---CC-HHHHHHHHHcC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-TNFNQILEYVKDIRDM--GMEVCCTLGM---LE-KHQAIELKKAG 194 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~-~~~~~l~e~i~~ik~~--~~~i~~~~g~---l~-~e~l~~L~~aG 194 (289)
.++|||.+.+.++.+.|..-+++-.-+ +..|.+ ...+.+.+.++.+++. ++-+..|.|. .+ ++.+..+....
T Consensus 23 ~tpeEia~~A~~c~~AGAa~vH~H~R~-~~~G~~s~d~~~~~e~~~~IR~~~pd~iv~~Ttg~~~~~~~~~R~~~v~~~~ 101 (272)
T PF05853_consen 23 ITPEEIAADAVACYEAGAAIVHIHARD-DEDGRPSLDPELYAEVVEAIRAACPDLIVQPTTGGGGGPDPEERLAHVEAWK 101 (272)
T ss_dssp -SHHHHHHHHHHHHHHTESEEEE-EE--TTTS-EE--HHHHHHHHHHHHHHSTTSEEEEESSTTTTSGHHHHCTHHHHH-
T ss_pred CCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCHHHHHHHHHhcC
Confidence 789999999999999999988885421 223444 5668888888888844 5666555332 33 33444444434
Q ss_pred CCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCce
Q 022946 195 LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINV 235 (289)
Q Consensus 195 ~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v 235 (289)
.+..++++-+. -. .....-.++.+.+.+.++.+++.|+++
T Consensus 102 pd~asl~~gs~n~~-~~~~~~~n~~~~~~~~~~~~~e~Gi~p 142 (272)
T PF05853_consen 102 PDMASLNPGSMNFG-TRDRVYINTPADARELARRMRERGIKP 142 (272)
T ss_dssp -SEEEEE-S-EEES-GGCSEE---HHHHHHHHHHHHHTT-EE
T ss_pred CCeEEecccccccc-cCCceecCCHHHHHHHHHHHHHcCCeE
Confidence 56666554432 11 000001134455555555555555544
|
; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B .... |
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=89.35 E-value=6.6 Score=34.95 Aligned_cols=100 Identities=12% Similarity=0.153 Sum_probs=62.8
Q ss_pred HHHHHHH--cCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcC--ceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch
Q 022946 130 AAQKAKE--AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG--MEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 205 (289)
Q Consensus 130 ~~~~~~~--~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~--~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~ 205 (289)
.++.+.+ .|++.+++-... | +-+.++++++.+|+.. ..+..- ...+.+..+.|.++|+|.+-+|+-..
T Consensus 112 r~~~L~~~~~g~D~iviD~Ah----G---hs~~~i~~ik~ik~~~P~~~vIaG-NV~T~e~a~~Li~aGAD~vKVGIGpG 183 (346)
T PRK05096 112 KTKQILALSPALNFICIDVAN----G---YSEHFVQFVAKAREAWPDKTICAG-NVVTGEMVEELILSGADIVKVGIGPG 183 (346)
T ss_pred HHHHHHhcCCCCCEEEEECCC----C---cHHHHHHHHHHHHHhCCCCcEEEe-cccCHHHHHHHHHcCCCEEEEcccCC
Confidence 3334444 488888874321 2 5578999999999653 333322 24789999999999999998877543
Q ss_pred -HHHHhccCC-C-CCHHHHHHHHHHHHHcCCceee
Q 022946 206 -REFYSKIIT-T-RSYDERLETLKHVREAGINVCS 237 (289)
Q Consensus 206 -~~~~~~i~~-~-~~~~~~~~~i~~~~~~Gi~v~~ 237 (289)
-=+-+.... + .....+.+.-+.+++.|.++.+
T Consensus 184 SiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIA 218 (346)
T PRK05096 184 SVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVS 218 (346)
T ss_pred ccccCccccccChhHHHHHHHHHHHHHHcCCCEEe
Confidence 111111111 1 1356677777778888876543
|
|
| >PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae | Back alignment and domain information |
|---|
Probab=89.28 E-value=12 Score=31.20 Aligned_cols=126 Identities=17% Similarity=0.212 Sum_probs=84.8
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEec-
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNH- 200 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i- 200 (289)
.+.+.|.+.++.+..-|.+.+-+-. . .++++.++.+ .++++|++. ++++.+-.-.++|.|-+.+
T Consensus 24 Fd~~~V~~i~~AA~~ggAt~vDIAa-------d----p~LV~~~~~~--s~lPICVSa--Vep~~f~~aV~AGAdliEIG 88 (242)
T PF04481_consen 24 FDAESVAAIVKAAEIGGATFVDIAA-------D----PELVKLAKSL--SNLPICVSA--VEPELFVAAVKAGADLIEIG 88 (242)
T ss_pred cCHHHHHHHHHHHHccCCceEEecC-------C----HHHHHHHHHh--CCCCeEeec--CCHHHHHHHHHhCCCEEEec
Confidence 4678888888888778888775543 1 3555555433 477888765 6788888899999999997
Q ss_pred CCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeee
Q 022946 201 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVP 268 (289)
Q Consensus 201 ~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~ 268 (289)
+.|++ |.+ .+..+.+++++.-+..|+.=..+...+.+=+.-..++-..+...|.++ +.|.++
T Consensus 89 NfDsF---Y~q-Gr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~--GaDiIQ 150 (242)
T PF04481_consen 89 NFDSF---YAQ-GRRFSAEEVLALTRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVKA--GADIIQ 150 (242)
T ss_pred chHHH---Hhc-CCeecHHHHHHHHHHHHHhCCCCceEEecCccccHHHHHHHHHHHHHh--CCcEEE
Confidence 46654 332 123478999999999988654444444443333455666777777777 456554
|
As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis. |
| >COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.02 E-value=12 Score=31.06 Aligned_cols=104 Identities=26% Similarity=0.331 Sum_probs=67.5
Q ss_pred HHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEe-CCCC-CHHHHHHHHHcCCCeEec--CCCchH
Q 022946 131 AQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCT-LGML-EKHQAIELKKAGLTAYNH--NLDTSR 206 (289)
Q Consensus 131 ~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~-~g~l-~~e~l~~L~~aG~~~v~i--~let~~ 206 (289)
++.+.+.|.+-+++.|.. ...-+...++..++.+.++... .+.- ..+..++|+++|++.+.+ |.|.
T Consensus 73 ~~ma~~aGAd~~tV~g~A--------~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H~g~D~-- 142 (217)
T COG0269 73 ARMAFEAGADWVTVLGAA--------DDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVILHRGRDA-- 142 (217)
T ss_pred HHHHHHcCCCEEEEEecC--------CHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEEEecccH--
Confidence 335568899999887632 4467778888888888776554 2333 355678888899998765 4433
Q ss_pred HHHhccCCCCCH-HHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHH
Q 022946 207 EFYSKIITTRSY-DERLETLKHVREAGINVCSGGIIGLGEAEEDRVGL 253 (289)
Q Consensus 207 ~~~~~i~~~~~~-~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~ 253 (289)
+. .+.++ .+.++.++.+.+.|+.+. +-| |-+++++...
T Consensus 143 q~-----~G~~~~~~~l~~ik~~~~~g~~vA---VaG-GI~~~~i~~~ 181 (217)
T COG0269 143 QA-----AGKSWGEDDLEKIKKLSDLGAKVA---VAG-GITPEDIPLF 181 (217)
T ss_pred hh-----cCCCccHHHHHHHHHhhccCceEE---Eec-CCCHHHHHHH
Confidence 11 23455 677888888888887654 222 5556654433
|
|
| >PLN02540 methylenetetrahydrofolate reductase | Back alignment and domain information |
|---|
Probab=88.96 E-value=18 Score=34.68 Aligned_cols=49 Identities=20% Similarity=0.172 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC-----chhHHHHHHHHHHHHh
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR-----KTNFNQILEYVKDIRD 170 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge-----~~~~~~l~e~i~~ik~ 170 (289)
++.+++.+.+..+.+.|++.|....|+....++ +..+.+..++|+.+++
T Consensus 70 ~n~~~L~~~L~~a~~~GIrNILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~ 123 (565)
T PLN02540 70 MPVEKIDHALETIKSNGIQNILALRGDPPHGQDKFVQVEGGFACALDLVKHIRS 123 (565)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHH
Confidence 567889999999999999999665555443332 1345668888888874
|
|
| >PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder | Back alignment and domain information |
|---|
Probab=88.76 E-value=6 Score=32.81 Aligned_cols=137 Identities=19% Similarity=0.290 Sum_probs=73.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCC----CchhHHHHHHHHHHHHh--cCceEEEeCCCCCHHHHHHHHHcCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG----RKTNFNQILEYVKDIRD--MGMEVCCTLGMLEKHQAIELKKAGL 195 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~g----e~~~~~~l~e~i~~ik~--~~~~i~~~~g~l~~e~l~~L~~aG~ 195 (289)
.+.++.++.++...+.|.+-+-++++...+.. +...++++.++++.+.+ .++.+.. .+.+.+++++-.++|.
T Consensus 16 ~~~~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSI--DT~~~~v~~~aL~~g~ 93 (210)
T PF00809_consen 16 FSEDEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSI--DTFNPEVAEAALKAGA 93 (210)
T ss_dssp HHHHHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEE--EESSHHHHHHHHHHTS
T ss_pred cCHHHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEE--ECCCHHHHHHHHHcCc
Confidence 46788888899999999999888765533332 23566788888888874 3444322 2233444444434455
Q ss_pred CeEe--cCCCchHHHHhc---c---------C--C---CCC-----------HHHHHHHHHHHHHcCC---ceeecEEee
Q 022946 196 TAYN--HNLDTSREFYSK---I---------I--T---TRS-----------YDERLETLKHVREAGI---NVCSGGIIG 242 (289)
Q Consensus 196 ~~v~--i~let~~~~~~~---i---------~--~---~~~-----------~~~~~~~i~~~~~~Gi---~v~~~~i~G 242 (289)
+.++ .+++..+++++. . . + ..+ .+...+.++.+.++|+ ++..+-.+|
T Consensus 94 ~~ind~~~~~~~~~~~~l~a~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~l~~~Gi~~~~Ii~DPgig 173 (210)
T PF00809_consen 94 DIINDISGFEDDPEMLPLAAEYGAPVVLMHSDGNPKGMPETADYRLDIAEEIIEFLEERIEALEKAGIPRERIILDPGIG 173 (210)
T ss_dssp SEEEETTTTSSSTTHHHHHHHHTSEEEEESESSETTTTTSSHHHSHSHHHHHHHHHHHHHHHHHHTT--GGGEEEETTTT
T ss_pred ceEEecccccccchhhhhhhcCCCEEEEEecccccccccccchhhhhHHHHHHHHHHHHHHHHHHcCCCHHHEeeccccC
Confidence 4443 122211111110 0 0 0 001 1223334444566899 477777778
Q ss_pred cCCCHHHHHHHHHHHhcC
Q 022946 243 LGEAEEDRVGLLHTLATL 260 (289)
Q Consensus 243 lget~ed~~~~l~~l~~l 260 (289)
++-+.++-.++++.+..+
T Consensus 174 f~~~~~~~~~~l~~i~~~ 191 (210)
T PF00809_consen 174 FGKDPEQNLELLRNIEEL 191 (210)
T ss_dssp SSTTHHHHHHHHHTHHHH
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 876666666666665554
|
It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B .... |
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=88.75 E-value=4.2 Score=34.72 Aligned_cols=73 Identities=18% Similarity=0.251 Sum_probs=51.2
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCc
Q 022946 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (289)
Q Consensus 128 ~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let 204 (289)
.+.++.+.+.|++++++.+-+....+. ..-+++++.++ ..++++....|.-+.+.++++.+.|++.+.++-..
T Consensus 33 ~~~a~~~~~~G~~~i~i~dl~~~~~~~----~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~ 106 (253)
T PRK02083 33 VELAKRYNEEGADELVFLDITASSEGR----DTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGADKVSINSAA 106 (253)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcccccC----cchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhH
Confidence 444455568899999997643321122 33455555555 34788888899999999999999999999887543
|
|
| >cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea | Back alignment and domain information |
|---|
Probab=88.68 E-value=12 Score=31.31 Aligned_cols=79 Identities=5% Similarity=0.061 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCC--------CCHHHHHH----H
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM--------LEKHQAIE----L 190 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~--------l~~e~l~~----L 190 (289)
+.+.....++++.+.|++.+.++-..... .+....+.+.++.+..++.++.+...... ++.+.+.. .
T Consensus 74 ~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~-~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a 152 (235)
T cd00958 74 NDKVLVASVEDAVRLGADAVGVTVYVGSE-EEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIG 152 (235)
T ss_pred CchhhhcCHHHHHHCCCCEEEEEEecCCc-hHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHH
Confidence 44555666777888999988554311110 11122233333333334567776543322 34455444 6
Q ss_pred HHcCCCeEecCC
Q 022946 191 KKAGLTAYNHNL 202 (289)
Q Consensus 191 ~~aG~~~v~i~l 202 (289)
.++|.|.|.++.
T Consensus 153 ~~~GaD~Ik~~~ 164 (235)
T cd00958 153 AELGADIVKTKY 164 (235)
T ss_pred HHHCCCEEEecC
Confidence 667999998864
|
Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies. |
| >KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.52 E-value=4.5 Score=32.85 Aligned_cols=81 Identities=11% Similarity=0.094 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE-ecccCCCCCCchhHHHHHHHHHHHHhc--CceEEEeCCCCCHHHHHHHHHcCCCeEe
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYN 199 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i-~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~i~~~~g~l~~e~l~~L~~aG~~~v~ 199 (289)
+...+.+++.++.+.|++.+++ +.++.+ ...-+.-.-+++.++.-... .++++.-. .-++++++.|.++|.+.+.
T Consensus 15 dfanL~~e~~~~l~~GadwlHlDVMDg~F-VpNiT~G~pvV~slR~~~~~~~ffD~HmMV-~~Peq~V~~~a~agas~~t 92 (224)
T KOG3111|consen 15 DFANLAAECKKMLDAGADWLHLDVMDGHF-VPNITFGPPVVESLRKHTGADPFFDVHMMV-ENPEQWVDQMAKAGASLFT 92 (224)
T ss_pred chHHHHHHHHHHHHcCCCeEEEeeecccc-cCCcccchHHHHHHHhccCCCcceeEEEee-cCHHHHHHHHHhcCcceEE
Confidence 4466778888888999999887 222221 11112224455555442211 22332111 1346678999999999999
Q ss_pred cCCCch
Q 022946 200 HNLDTS 205 (289)
Q Consensus 200 i~let~ 205 (289)
+..|..
T Consensus 93 fH~E~~ 98 (224)
T KOG3111|consen 93 FHYEAT 98 (224)
T ss_pred EEEeec
Confidence 988774
|
|
| >TIGR03849 arch_ComA phosphosulfolactate synthase | Back alignment and domain information |
|---|
Probab=88.49 E-value=14 Score=31.21 Aligned_cols=40 Identities=20% Similarity=0.265 Sum_probs=18.6
Q ss_pred HHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCce
Q 022946 187 AIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINV 235 (289)
Q Consensus 187 l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v 235 (289)
++..++.|++.|.+|--+. .-+.+++.+.|+.+++.|+.+
T Consensus 77 l~~~k~lGf~~IEiS~G~~---------~i~~~~~~rlI~~~~~~g~~v 116 (237)
T TIGR03849 77 LNECDELGFEAVEISDGSM---------EISLEERCNLIERAKDNGFMV 116 (237)
T ss_pred HHHHHHcCCCEEEEcCCcc---------CCCHHHHHHHHHHHHhCCCeE
Confidence 3455555555555543221 123444555555555555443
|
This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679. |
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=88.42 E-value=12 Score=35.74 Aligned_cols=82 Identities=11% Similarity=-0.004 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCH-----------HHHHHH
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEK-----------HQAIEL 190 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~-----------e~l~~L 190 (289)
.....++.++...+.|+++++|..-+....+ +...+..+++++++. ...+++.+-.|.-+. |.++++
T Consensus 265 ~~gdPve~a~~y~~~Gadel~~~Di~~~~~~-~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~ 343 (538)
T PLN02617 265 NLGKPVELAGQYYKDGADEVAFLNITGFRDF-PLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEY 343 (538)
T ss_pred cCCCHHHHHHHHHHcCCCEEEEEECCCCcCC-cccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHHHH
Confidence 4455567777888999999998753211111 223355677777766 457777776676553 779999
Q ss_pred HHcCCCeEecCCCch
Q 022946 191 KKAGLTAYNHNLDTS 205 (289)
Q Consensus 191 ~~aG~~~v~i~let~ 205 (289)
.++|++.|.++-.+.
T Consensus 344 l~~GadkV~i~s~Av 358 (538)
T PLN02617 344 FRSGADKISIGSDAV 358 (538)
T ss_pred HHcCCCEEEEChHHH
Confidence 999999999986554
|
|
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.41 E-value=5.1 Score=33.11 Aligned_cols=68 Identities=18% Similarity=0.100 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCC-CCHHHHHHHHHcCCCeEe
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM-LEKHQAIELKKAGLTAYN 199 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~-l~~e~l~~L~~aG~~~v~ 199 (289)
.++|+.+..++.+.+.|++-+.+.- .. +.-.+.|+.+++...++.+-.|+ ++.+.+++..++|.+.+-
T Consensus 22 ~~~e~a~~~a~Ali~gGi~~IEITl------~s----p~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fiV 90 (211)
T COG0800 22 DDVEEALPLAKALIEGGIPAIEITL------RT----PAALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFIV 90 (211)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEec------CC----CCHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEEE
Confidence 5889999999999999999887753 11 23445555555332266666665 899999999999997543
|
|
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=88.40 E-value=4.7 Score=33.94 Aligned_cols=82 Identities=12% Similarity=0.111 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecCC
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
++.++.+. +.+. ++++++..-+....|.+.+++-+.++.+ ..++++....|.-+.+.++.|.++|++.+.+|-
T Consensus 31 dp~~~a~~---~~~~-~~~l~ivDldga~~g~~~n~~~i~~i~~---~~~~pv~~gGGIrs~edv~~l~~~G~~~vivGt 103 (228)
T PRK04128 31 DPVEIALR---FSEY-VDKIHVVDLDGAFEGKPKNLDVVKNIIR---ETGLKVQVGGGLRTYESIKDAYEIGVENVIIGT 103 (228)
T ss_pred CHHHHHHH---HHHh-CCEEEEEECcchhcCCcchHHHHHHHHh---hCCCCEEEcCCCCCHHHHHHHHHCCCCEEEECc
Confidence 55554444 4455 7888775432222243334433333332 357788888999999999999999999998886
Q ss_pred Cch-HHHHhc
Q 022946 203 DTS-REFYSK 211 (289)
Q Consensus 203 et~-~~~~~~ 211 (289)
.+. ++..+.
T Consensus 104 aa~~~~~l~~ 113 (228)
T PRK04128 104 KAFDLEFLEK 113 (228)
T ss_pred hhcCHHHHHH
Confidence 555 444443
|
|
| >COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=88.31 E-value=13 Score=33.80 Aligned_cols=76 Identities=22% Similarity=0.231 Sum_probs=51.1
Q ss_pred CcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceE----EEeCC-----CCCHHHHH
Q 022946 118 GQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEV----CCTLG-----MLEKHQAI 188 (289)
Q Consensus 118 ~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i----~~~~g-----~l~~e~l~ 188 (289)
.|+..+.|-|.+-++...++|++-|.+..+- + ....+...++.+|+.|.++ +-+.. ....+.++
T Consensus 91 GYrhyaDDvVe~Fv~ka~~nGidvfRiFDAl----N---D~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~ak 163 (472)
T COG5016 91 GYRHYADDVVEKFVEKAAENGIDVFRIFDAL----N---DVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAK 163 (472)
T ss_pred cccCCchHHHHHHHHHHHhcCCcEEEechhc----c---chhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHH
Confidence 3454567777777888899999988776532 2 3356677777777666553 21111 13456678
Q ss_pred HHHHcCCCeEec
Q 022946 189 ELKKAGLTAYNH 200 (289)
Q Consensus 189 ~L~~aG~~~v~i 200 (289)
+|.+.|+|+|.+
T Consensus 164 el~~~g~DSIci 175 (472)
T COG5016 164 ELLEMGVDSICI 175 (472)
T ss_pred HHHHcCCCEEEe
Confidence 999999999986
|
|
| >cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain | Back alignment and domain information |
|---|
Probab=88.26 E-value=13 Score=32.68 Aligned_cols=109 Identities=17% Similarity=0.219 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhcCceEEEeCCC-----C-----C-----HHHHHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHH
Q 022946 159 NQILEYVKDIRDMGMEVCCTLGM-----L-----E-----KHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLE 223 (289)
Q Consensus 159 ~~l~e~i~~ik~~~~~i~~~~g~-----l-----~-----~e~l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~ 223 (289)
..+...|+.++..|.++.++.|- + + ....+.+...|++.|-+.+|... .......+.+.+
T Consensus 54 ~~~~~~i~~lk~~G~kViiS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~-----~~d~~~~~~~~~ 128 (294)
T cd06543 54 GWIKSDIAALRAAGGDVIVSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGA-----LTDTAAIDRRAQ 128 (294)
T ss_pred hhHHHHHHHHHHcCCeEEEEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCc-----cccchhHHHHHH
Confidence 45667777888778777666321 1 1 12345566679999999998862 111234678888
Q ss_pred HHHHHHHc--CCceeecEEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccce
Q 022946 224 TLKHVREA--GINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALL 273 (289)
Q Consensus 224 ~i~~~~~~--Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~ 273 (289)
+|+.+++. ++.+..++-+.- |-+.+ =.+.++..++.+..++.|+++.+-
T Consensus 129 al~~Lq~~~p~l~vs~Tlp~~p~gl~~~-g~~~l~~a~~~Gv~~d~VNiMtmD 180 (294)
T cd06543 129 ALALLQKEYPDLKISFTLPVLPTGLTPD-GLNVLEAAAANGVDLDTVNIMTMD 180 (294)
T ss_pred HHHHHHHHCCCcEEEEecCCCCCCCChh-HHHHHHHHHHcCCCcceeeeeeec
Confidence 88888885 555555543322 32322 234555566554346788887764
|
Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature. |
| >PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification | Back alignment and domain information |
|---|
Probab=88.23 E-value=4.5 Score=33.90 Aligned_cols=71 Identities=20% Similarity=0.290 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEe--CCCCCHHHHHHHHHcCCCeEecCC
Q 022946 125 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCT--LGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 125 eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~--~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
+++.+.++.+.+.|++.|.+.. ..++++++... .++++..+ ....+.+.++.+++.|++++.++.
T Consensus 2 ~~~~~~l~~l~~~g~dgi~v~~------------~g~~~~~k~~~-~~~~i~~~~~~nv~N~~s~~~~~~~G~~~i~ls~ 68 (233)
T PF01136_consen 2 EELEKYLDKLKELGVDGILVSN------------PGLLELLKELG-PDLKIIADYSLNVFNSESARFLKELGASRITLSP 68 (233)
T ss_pred hHHHHHHHHHHhCCCCEEEEcC------------HHHHHHHHHhC-CCCcEEEecCccCCCHHHHHHHHHcCCCEEEECc
Confidence 5677888888899999987643 23444444331 13444333 455788889999999999999888
Q ss_pred Cch-HHH
Q 022946 203 DTS-REF 208 (289)
Q Consensus 203 et~-~~~ 208 (289)
|-. +++
T Consensus 69 EL~~~ei 75 (233)
T PF01136_consen 69 ELSLEEI 75 (233)
T ss_pred cCCHHHH
Confidence 775 443
|
; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis |
| >cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain | Back alignment and domain information |
|---|
Probab=87.94 E-value=9.4 Score=28.53 Aligned_cols=69 Identities=16% Similarity=0.198 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCc---eEEEeCCCCCHHHHHHHHHcCCCeE
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGM---EVCCTLGMLEKHQAIELKKAGLTAY 198 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~---~i~~~~g~l~~e~l~~L~~aG~~~v 198 (289)
.|++++.+.+. +.+.+-|.+++.. ....+.+.++++.+++.+. .+.. .|....+..++++++|++.+
T Consensus 37 vp~e~~~~~a~---~~~~d~V~iS~~~------~~~~~~~~~~~~~L~~~~~~~i~i~~-GG~~~~~~~~~~~~~G~d~~ 106 (122)
T cd02071 37 QTPEEIVEAAI---QEDVDVIGLSSLS------GGHMTLFPEVIELLRELGAGDILVVG-GGIIPPEDYELLKEMGVAEI 106 (122)
T ss_pred CCHHHHHHHHH---HcCCCEEEEcccc------hhhHHHHHHHHHHHHhcCCCCCEEEE-ECCCCHHHHHHHHHCCCCEE
Confidence 57888777655 5677888876522 2355667777777775533 3322 34456777899999999877
Q ss_pred ec
Q 022946 199 NH 200 (289)
Q Consensus 199 ~i 200 (289)
..
T Consensus 107 ~~ 108 (122)
T cd02071 107 FG 108 (122)
T ss_pred EC
Confidence 54
|
This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation. |
| >PRK14847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.94 E-value=19 Score=32.12 Aligned_cols=115 Identities=7% Similarity=-0.016 Sum_probs=64.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc-----CceEEEeCCCCCHH----HHHHH
Q 022946 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-----GMEVCCTLGMLEKH----QAIEL 190 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~-----~~~i~~~~g~l~~e----~l~~L 190 (289)
-.++.++=++.++.+.+.|++.|..+. +..+ +.. .+.++.+.+. ...+.+-.- ...+ .++.+
T Consensus 49 v~fs~eeKl~IA~~L~~lGVd~IEvG~---Pa~s-~~e----~e~ir~I~~~~~~~~~~~i~~~~r-~~~~dId~a~e~~ 119 (333)
T PRK14847 49 EPMDGARKLRLFEQLVAVGLKEIEVAF---PSAS-QTD----FDFVRKLIDERRIPDDVTIEALTQ-SRPDLIARTFEAL 119 (333)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeeC---CCCC-HHH----HHHHHHHHHhCCCCCCcEEEEEec-CcHHHHHHHHHHh
Confidence 348999999999999999999997653 1122 223 3344444322 233332222 2233 34444
Q ss_pred HHcCCCeEecCCCchHHHH-hccCCC--CCHHHHHHHHHHHHHcCCce---eecEEeec
Q 022946 191 KKAGLTAYNHNLDTSREFY-SKIITT--RSYDERLETLKHVREAGINV---CSGGIIGL 243 (289)
Q Consensus 191 ~~aG~~~v~i~let~~~~~-~~i~~~--~~~~~~~~~i~~~~~~Gi~v---~~~~i~Gl 243 (289)
+.++...|.+.+-+++-.. .+++.. .-.+...++++.+++.|... ...+-+|.
T Consensus 120 ~~~~~~~Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~ 178 (333)
T PRK14847 120 AGSPRAIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQWIYEYSP 178 (333)
T ss_pred CCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCceEEEEee
Confidence 4455567888888773333 334332 12455566778888886631 12355666
|
|
| >PTZ00124 adenosine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=87.89 E-value=6.5 Score=35.60 Aligned_cols=79 Identities=10% Similarity=0.193 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCC----C-HHHHHHHHHcCCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGML----E-KHQAIELKKAGLT 196 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l----~-~e~l~~L~~aG~~ 196 (289)
.+++...+.++.+.++.-. | +|- +..|.+..+..+.++++.+++.|+.+..+.|.. + .+..+.+...|.+
T Consensus 174 ~~~e~a~e~~~~a~~~~~~-v--vGi--DLaG~E~~~~~f~~~f~~Ar~~Gl~~t~HaGE~~~~~~~~~v~~ai~~l~~~ 248 (362)
T PTZ00124 174 HDAAPIKESADFCLKHKAD-F--VGF--DHAGHEVDLKPFKDIFDYVREAGVNLTVHAGEDVTLPNLNTLYSAIQVLKVK 248 (362)
T ss_pred CCHHHHHHHHHHHHhccCC-e--EEE--eccCCCCCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcchhHHHHHHHhCCC
Confidence 3556655555555543211 2 221 122323234557777777777788877776642 1 3456777778999
Q ss_pred eEecCCCch
Q 022946 197 AYNHNLDTS 205 (289)
Q Consensus 197 ~v~i~let~ 205 (289)
+|.+|+...
T Consensus 249 RIGHG~~~~ 257 (362)
T PTZ00124 249 RIGHGIRVA 257 (362)
T ss_pred ccccccccC
Confidence 999988774
|
|
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=87.84 E-value=11 Score=31.42 Aligned_cols=68 Identities=16% Similarity=0.083 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcC--ceEEEeCCC-CCHHHHHHHHHcCCCe
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMG--MEVCCTLGM-LEKHQAIELKKAGLTA 197 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~--~~i~~~~g~-l~~e~l~~L~~aG~~~ 197 (289)
.+.++.+..++.+.+.|++.+.++-. . | .-++.++.++ +.+ .++.+-.|+ ++.+.++...++|.+.
T Consensus 22 ~~~~~a~~~~~al~~~Gi~~iEit~~--~----~----~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~F 91 (213)
T PRK06552 22 ESKEEALKISLAVIKGGIKAIEVTYT--N----P----FASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQF 91 (213)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECC--C----c----cHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCE
Confidence 48899999999999999998877541 1 2 2445555555 232 245555554 8999999999999976
Q ss_pred Ee
Q 022946 198 YN 199 (289)
Q Consensus 198 v~ 199 (289)
+-
T Consensus 92 iv 93 (213)
T PRK06552 92 IV 93 (213)
T ss_pred EE
Confidence 54
|
|
| >PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=87.84 E-value=17 Score=31.31 Aligned_cols=132 Identities=14% Similarity=0.121 Sum_probs=74.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-cCceEEEeCCCCCHHHHHHHHHc--CCCeE
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKA--GLTAY 198 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~~~~i~~~~g~l~~e~l~~L~~a--G~~~v 198 (289)
.+.+.+++.++...+.|.+-+-++++. .+ ....+++..+++.+++ .++.+ +..+.+.+.+++-.++ |.+-|
T Consensus 22 ~d~~~i~~~A~~~~~~GAdiIDVg~~~---~~-~eE~~r~~~~v~~l~~~~~~pl--sIDT~~~~v~eaaL~~~~G~~iI 95 (261)
T PRK07535 22 KDAAFIQKLALKQAEAGADYLDVNAGT---AV-EEEPETMEWLVETVQEVVDVPL--CIDSPNPAAIEAGLKVAKGPPLI 95 (261)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCC---Cc-hhHHHHHHHHHHHHHHhCCCCE--EEeCCCHHHHHHHHHhCCCCCEE
Confidence 578899999999999999888776532 11 2345677777777763 34433 2333445555544444 55544
Q ss_pred e-cCCCc--hHHHHh---ccC----------C--CCC----HHHHHHHHHHHHHcCC---ceeecEEeec-CCCHHHHHH
Q 022946 199 N-HNLDT--SREFYS---KII----------T--TRS----YDERLETLKHVREAGI---NVCSGGIIGL-GEAEEDRVG 252 (289)
Q Consensus 199 ~-i~let--~~~~~~---~i~----------~--~~~----~~~~~~~i~~~~~~Gi---~v~~~~i~Gl-get~ed~~~ 252 (289)
+ ++.+. .+++.+ +.. . +.+ .+...+.++.+.++|+ ++..+-.+|. +-+.++..+
T Consensus 96 NsIs~~~~~~~~~~~l~~~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~GI~~~~IilDPgi~~~~~~~~~~~~ 175 (261)
T PRK07535 96 NSVSAEGEKLEVVLPLVKKYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEYGIPPEDIYIDPLVLPLSAAQDAGPE 175 (261)
T ss_pred EeCCCCCccCHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHhHEEEeCCCCcccCChHHHHH
Confidence 3 33322 122211 110 0 112 3444556777888999 4777777774 666665655
Q ss_pred HHHHHhc
Q 022946 253 LLHTLAT 259 (289)
Q Consensus 253 ~l~~l~~ 259 (289)
+++.++.
T Consensus 176 ~l~~i~~ 182 (261)
T PRK07535 176 VLETIRR 182 (261)
T ss_pred HHHHHHH
Confidence 5555443
|
|
| >COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=87.83 E-value=5 Score=36.43 Aligned_cols=135 Identities=11% Similarity=0.124 Sum_probs=69.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc----CceE----EEeCCC--CCHHHHHHH-
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM----GMEV----CCTLGM--LEKHQAIEL- 190 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~----~~~i----~~~~g~--l~~e~l~~L- 190 (289)
+..++.+-.++.+.+.|+.++.+-||-.+..--...-++=.+.++.+|+. .+.. ....|+ ..+++++.+
T Consensus 25 mrt~DmlPi~e~lD~~G~~slE~WGGATFDaciRfLnEDPWeRLr~lk~~~~nT~LQMLlRGQNlvGYrhyaDDvVe~Fv 104 (472)
T COG5016 25 MRTEDMLPIAEALDKVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKAVPNTKLQMLLRGQNLVGYRHYADDVVEKFV 104 (472)
T ss_pred HhHHhhHHHHHHHHhcCeeEEEecCCccHHHHHHHhcCCHHHHHHHHHHhCCCcHHHHHHccCccccccCCchHHHHHHH
Confidence 67888899999999999998877554322110000002223333444421 1111 111232 345555444
Q ss_pred ---HHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec--CCCHHHHHHHHHHHhcCCCCCC
Q 022946 191 ---KKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL--GEAEEDRVGLLHTLATLPTHPE 265 (289)
Q Consensus 191 ---~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl--get~ed~~~~l~~l~~l~~~~~ 265 (289)
.+.|+|.+.+ |+.+ ++......+++.+++.|..+...+.+-. -+|.+-..+..+.+.++ +++
T Consensus 105 ~ka~~nGidvfRi--------FDAl---ND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~--g~D 171 (472)
T COG5016 105 EKAAENGIDVFRI--------FDAL---NDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEM--GVD 171 (472)
T ss_pred HHHHhcCCcEEEe--------chhc---cchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHc--CCC
Confidence 4457776543 2222 2334445566666666665444444433 56666666666666666 456
Q ss_pred eeee
Q 022946 266 SVPI 269 (289)
Q Consensus 266 ~v~i 269 (289)
++.|
T Consensus 172 SIci 175 (472)
T COG5016 172 SICI 175 (472)
T ss_pred EEEe
Confidence 6554
|
|
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=87.81 E-value=8.4 Score=34.10 Aligned_cols=100 Identities=13% Similarity=0.174 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecccCCC--CCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHH-HcCCCeEe
Q 022946 124 KDAVMQAAQKAKEAGSTRFCMGAAWRDT--IGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELK-KAGLTAYN 199 (289)
Q Consensus 124 ~eei~~~~~~~~~~g~~~i~i~~~~~~~--~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~-~aG~~~v~ 199 (289)
.++..+.++.+.+.|++.+++.+..... .|.+..+ +.++.++ ..++.+..+.+..+.+.++++. ..|+|.|.
T Consensus 147 ~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~----~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVm 222 (312)
T PRK10550 147 GERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINW----QAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVM 222 (312)
T ss_pred chHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccH----HHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEE
Confidence 3556777788888999999886532211 1211122 5566666 3578888888888888887755 57999999
Q ss_pred cCCCch--HHHHhccCC---CCCHHHHHHHHHH
Q 022946 200 HNLDTS--REFYSKIIT---TRSYDERLETLKH 227 (289)
Q Consensus 200 i~let~--~~~~~~i~~---~~~~~~~~~~i~~ 227 (289)
+|=-.. |..++.+.. ..+++++++.+..
T Consensus 223 iGRg~l~nP~lf~~~~~g~~~~~~~e~~~~~~~ 255 (312)
T PRK10550 223 IGRGALNIPNLSRVVKYNEPRMPWPEVVALLQK 255 (312)
T ss_pred EcHHhHhCcHHHHHhhcCCCCCCHHHHHHHHHH
Confidence 975554 667766543 2356666665554
|
|
| >cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Probab=87.74 E-value=3 Score=36.18 Aligned_cols=99 Identities=16% Similarity=0.273 Sum_probs=59.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-cC--ceEEE--eCCCCCHHHHHHHHHcCCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MG--MEVCC--TLGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~~--~~i~~--~~g~l~~e~l~~L~~aG~~ 196 (289)
.+++.+.+.++.+.+.|++.|.+.. +.|- ..-..+.++++.+++ .+ +.++. +.|.-....+..+ ++|++
T Consensus 146 ~~~~~~~~~~~~~~~~Ga~~i~l~D----T~G~-~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~aN~laA~-~aGa~ 219 (275)
T cd07937 146 HTLEYYVKLAKELEDMGADSICIKD----MAGL-LTPYAAYELVKALKKEVGLPIHLHTHDTSGLAVATYLAAA-EAGVD 219 (275)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcC----CCCC-CCHHHHHHHHHHHHHhCCCeEEEEecCCCChHHHHHHHHH-HhCCC
Confidence 4788899999999999999998854 2221 122455555655552 23 33344 3455445555555 57999
Q ss_pred eEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCc
Q 022946 197 AYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN 234 (289)
Q Consensus 197 ~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~ 234 (289)
.|..++.+. +. ...-..++++..++ +.|+.
T Consensus 220 ~vd~sv~GlG~~-----aGN~~~E~l~~~L~---~~g~~ 250 (275)
T cd07937 220 IVDTAISPLSGG-----TSQPSTESMVAALR---GTGRD 250 (275)
T ss_pred EEEEecccccCC-----cCChhHHHHHHHHH---ccCCC
Confidence 999888775 32 11224555555554 33554
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex |
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=87.67 E-value=5.3 Score=35.90 Aligned_cols=116 Identities=18% Similarity=0.225 Sum_probs=70.3
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc-C-ceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch
Q 022946 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-G-MEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 205 (289)
Q Consensus 128 ~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~-~-~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~ 205 (289)
.+.++.+.+.|++-+++-... | +-+.+.+.++.+|+. + +.+..-| ..+.+..+.|.++|+|.|-+|+-..
T Consensus 110 ~er~~~L~~agvD~ivID~a~----g---~s~~~~~~ik~ik~~~~~~~viaGN-V~T~e~a~~L~~aGad~vkVGiGpG 181 (352)
T PF00478_consen 110 FERAEALVEAGVDVIVIDSAH----G---HSEHVIDMIKKIKKKFPDVPVIAGN-VVTYEGAKDLIDAGADAVKVGIGPG 181 (352)
T ss_dssp HHHHHHHHHTT-SEEEEE-SS----T---TSHHHHHHHHHHHHHSTTSEEEEEE-E-SHHHHHHHHHTT-SEEEESSSSS
T ss_pred HHHHHHHHHcCCCEEEccccC----c---cHHHHHHHHHHHHHhCCCceEEecc-cCCHHHHHHHHHcCCCEEEEeccCC
Confidence 444556667899988885421 2 346788888888844 3 5554433 5789999999999999999987653
Q ss_pred -HHHHhccCC-C-CCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHH
Q 022946 206 -REFYSKIIT-T-RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLL 254 (289)
Q Consensus 206 -~~~~~~i~~-~-~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l 254 (289)
-=+-+.+.. + .....+.++-+.+++.|+++.++-= -.+.-|+..-+
T Consensus 182 siCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGG---i~~sGDi~KAl 230 (352)
T PF00478_consen 182 SICTTREVTGVGVPQLTAVYECAEAARDYGVPIIADGG---IRTSGDIVKAL 230 (352)
T ss_dssp TTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS----SSHHHHHHHH
T ss_pred cccccccccccCCcHHHHHHHHHHHhhhccCceeecCC---cCcccceeeee
Confidence 111111111 1 2467778888888888887644321 12445555443
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=87.61 E-value=6.5 Score=35.15 Aligned_cols=78 Identities=12% Similarity=0.158 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcC----ceEEEe--CCCCCHHHHHHHHHcC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMG----MEVCCT--LGMLEKHQAIELKKAG 194 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~----~~i~~~--~g~l~~e~l~~L~~aG 194 (289)
.+++++.+.++.+.+.|++.|++... .| -..-+++.++++.++ ..+ +.++.+ .|.-....+.. .++|
T Consensus 140 ~~~e~l~~~a~~~~~~Ga~~i~i~DT----~G-~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaA-i~aG 213 (333)
T TIGR03217 140 TPPEKLAEQAKLMESYGADCVYIVDS----AG-AMLPDDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAA-IEAG 213 (333)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEccC----CC-CCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHH-HHhC
Confidence 47899999999999999999988642 22 123355666666655 222 333443 45433344444 4689
Q ss_pred CCeEecCCCch
Q 022946 195 LTAYNHNLDTS 205 (289)
Q Consensus 195 ~~~v~i~let~ 205 (289)
+++|..++.+.
T Consensus 214 a~~iD~Sl~G~ 224 (333)
T TIGR03217 214 ATRIDASLRGL 224 (333)
T ss_pred CCEEEeecccc
Confidence 99998887664
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=87.10 E-value=13 Score=33.94 Aligned_cols=122 Identities=14% Similarity=0.088 Sum_probs=69.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcC--ceEEEeCCCCCH--HHHHHHHHcCCCe
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG--MEVCCTLGMLEK--HQAIELKKAGLTA 197 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~--~~i~~~~g~l~~--e~l~~L~~aG~~~ 197 (289)
.+.++.++.++.+.+.+...+-+ |-++....=.+.++.+++.+ ..+....-..+. -.++.+.++|++.
T Consensus 182 ~~~~~A~~i~~~l~~~~~~~iKv--------G~~L~~~~G~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~aGAD~ 253 (391)
T PRK13307 182 PDLEEVERVLSQLPKSDHIIIEA--------GTPLIKKFGLEVISKIREVRPDAFIVADLKTLDTGNLEARMAADATADA 253 (391)
T ss_pred CCHHHHHHHHHhcccccceEEEE--------CHHHHHHhCHHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHhcCCCE
Confidence 46777777777665443332222 22444444467777777553 345444333222 2367899999999
Q ss_pred EecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeecc
Q 022946 198 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINA 271 (289)
Q Consensus 198 v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~ 271 (289)
+.+..++. .+...++++.+++.|+.+...++ + -+|..+..+-+ .. +++.+.++.
T Consensus 254 vTVH~ea~------------~~ti~~ai~~akk~GikvgVD~l-n-p~tp~e~i~~l----~~--~vD~Vllht 307 (391)
T PRK13307 254 VVISGLAP------------ISTIEKAIHEAQKTGIYSILDML-N-VEDPVKLLESL----KV--KPDVVELHR 307 (391)
T ss_pred EEEeccCC------------HHHHHHHHHHHHHcCCEEEEEEc-C-CCCHHHHHHHh----hC--CCCEEEEcc
Confidence 99887653 34456678888888876543322 2 24444333322 22 356666665
|
|
| >TIGR03569 NeuB_NnaB N-acetylneuraminate synthase | Back alignment and domain information |
|---|
Probab=87.02 E-value=11 Score=33.58 Aligned_cols=109 Identities=16% Similarity=0.160 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCC-----------------CCCc---------hhHHHHHHHHHHHHhcCceEE
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDT-----------------IGRK---------TNFNQILEYVKDIRDMGMEVC 176 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~-----------------~ge~---------~~~~~l~e~i~~ik~~~~~i~ 176 (289)
+.+...+.++.+.+.|++-|-|+.-..+. .|++ ...+++.++.+..++.|+.+.
T Consensus 14 dl~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~Gi~~~ 93 (329)
T TIGR03569 14 SLELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCESKGIEFL 93 (329)
T ss_pred cHHHHHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHHHHhCCcEE
Confidence 66778888888888998888776420000 0110 112344444455556788887
Q ss_pred EeCCCCCHHHHHHHHHcCCCeEec-CCCch-HHHHhccCC---------C-CCHHHHHHHHHHHHHcCC
Q 022946 177 CTLGMLEKHQAIELKKAGLTAYNH-NLDTS-REFYSKIIT---------T-RSYDERLETLKHVREAGI 233 (289)
Q Consensus 177 ~~~g~l~~e~l~~L~~aG~~~v~i-~let~-~~~~~~i~~---------~-~~~~~~~~~i~~~~~~Gi 233 (289)
++. ++.+.++.|.+.|++.+.+ |-|.. -.+++.+.. + .+.+++.++++.+++.|-
T Consensus 94 stp--fd~~svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvilStGmatl~Ei~~Av~~i~~~G~ 160 (329)
T TIGR03569 94 STP--FDLESADFLEDLGVPRFKIPSGEITNAPLLKKIARFGKPVILSTGMATLEEIEAAVGVLRDAGT 160 (329)
T ss_pred EEe--CCHHHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 765 7789999999999999987 44444 444444432 1 257888888888877764
|
This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine. |
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=86.93 E-value=3.4 Score=37.03 Aligned_cols=79 Identities=14% Similarity=0.020 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-cCceEEEeCCCCCHHHHHHHHHcC-CCeEec
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAG-LTAYNH 200 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~~~~i~~~~g~l~~e~l~~L~~aG-~~~v~i 200 (289)
+.++.++.++.+.+.|++.+.+.++...+...+..-....++.+.+|+ .++.+..+.+..+.+.++++.+.| +|.|.+
T Consensus 225 ~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~ 304 (337)
T PRK13523 225 TVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLIFI 304 (337)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHHh
Confidence 556666666666666666666654321100000000112334444442 345555555555666666666554 666555
Q ss_pred C
Q 022946 201 N 201 (289)
Q Consensus 201 ~ 201 (289)
+
T Consensus 305 g 305 (337)
T PRK13523 305 G 305 (337)
T ss_pred h
Confidence 4
|
|
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=86.92 E-value=5.9 Score=33.42 Aligned_cols=75 Identities=19% Similarity=0.166 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCc
Q 022946 126 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (289)
Q Consensus 126 ei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let 204 (289)
..++.++.+.+.|++++++..-+.. .|.+.+. ++++.+. ..++++..-.|.-+.+.++.+.++|++++.++-++
T Consensus 36 dp~~~a~~~~~~g~~~l~i~DLd~~-~~~~~n~----~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~ 110 (233)
T cd04723 36 DPLDVARAYKELGFRGLYIADLDAI-MGRGDND----EAIRELAAAWPLGLWVDGGIRSLENAQEWLKRGASRVIVGTET 110 (233)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCccc-cCCCccH----HHHHHHHHhCCCCEEEecCcCCHHHHHHHHHcCCCeEEEccee
Confidence 3355566677889999998764322 2333343 3444443 34677777888889999999999999999888766
Q ss_pred h
Q 022946 205 S 205 (289)
Q Consensus 205 ~ 205 (289)
.
T Consensus 111 ~ 111 (233)
T cd04723 111 L 111 (233)
T ss_pred c
Confidence 4
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >PRK14041 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=86.88 E-value=17 Score=34.13 Aligned_cols=99 Identities=16% Similarity=0.278 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcC--ceEEEe--CCCCCHHHHHHHHHcCCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMG--MEVCCT--LGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~--~~i~~~--~g~l~~e~l~~L~~aG~~ 196 (289)
.+.+.+++.++.+.+.|++.|+|.. +.|- ..=..+.++++.++ ..+ +.++++ .|.-....+. -.++|++
T Consensus 150 ~t~e~~~~~a~~l~~~Gad~I~i~D----t~G~-l~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA~AN~la-AieaGad 223 (467)
T PRK14041 150 HTLEYYLEFARELVDMGVDSICIKD----MAGL-LTPKRAYELVKALKKKFGVPVEVHSHCTTGLASLAYLA-AVEAGAD 223 (467)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECC----ccCC-cCHHHHHHHHHHHHHhcCCceEEEecCCCCcHHHHHHH-HHHhCCC
Confidence 4789999999999999999999954 1221 12245666666666 333 334444 4543344344 3478999
Q ss_pred eEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCc
Q 022946 197 AYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN 234 (289)
Q Consensus 197 ~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~ 234 (289)
.|..++... +.. ..-+.++++.+++ ..|+.
T Consensus 224 ~vD~sv~~~g~ga-----gN~atE~lv~~L~---~~g~~ 254 (467)
T PRK14041 224 MFDTAISPFSMGT-----SQPPFESMYYAFR---ENGKE 254 (467)
T ss_pred EEEeeccccCCCC-----CChhHHHHHHHHH---hcCCC
Confidence 999888765 311 1224566655554 34554
|
|
| >COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=86.79 E-value=8.2 Score=32.07 Aligned_cols=80 Identities=11% Similarity=0.182 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCchHHHHhccCC---CCCHHHHHHHHHHHHHcCC
Q 022946 157 NFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIIT---TRSYDERLETLKHVREAGI 233 (289)
Q Consensus 157 ~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~~~~~~~i~~---~~~~~~~~~~i~~~~~~Gi 233 (289)
..+.+.+.+++++..|+++..... -+.+.++.-++.|.++|.+----+.+.++.-.+ ..-++.+-++.+.+.+.|+
T Consensus 109 ~~~~l~~~v~~L~~~GirVSLFiD-~d~~qi~aa~~~gA~~IELhTG~Ya~~~~~~~~~~~~~el~rl~~~a~~A~~lGL 187 (243)
T COG0854 109 QLDKLRDAVRRLKNAGIRVSLFID-PDPEQIEAAAEVGAPRIELHTGPYADAHDAAEQARADAELERLAKAAKLAAELGL 187 (243)
T ss_pred hhhhHHHHHHHHHhCCCeEEEEeC-CCHHHHHHHHHhCCCEEEEecccccccCChHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 457888999999999998865544 678999999999999987532111111110000 0124455566666777888
Q ss_pred ceee
Q 022946 234 NVCS 237 (289)
Q Consensus 234 ~v~~ 237 (289)
.|+.
T Consensus 188 ~VnA 191 (243)
T COG0854 188 KVNA 191 (243)
T ss_pred eEec
Confidence 8764
|
|
| >KOG0564 consensus 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.78 E-value=6 Score=36.80 Aligned_cols=120 Identities=22% Similarity=0.221 Sum_probs=71.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC------chhHHHHHHHHHHHH-hcCceEEEe-C----CC--------
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR------KTNFNQILEYVKDIR-DMGMEVCCT-L----GM-------- 181 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge------~~~~~~l~e~i~~ik-~~~~~i~~~-~----g~-------- 181 (289)
++.+.|...++.+++.|++.|.-.-|+ ++.|. ...+...+++|+.++ ++|=.+++. . |.
T Consensus 89 ~~~~~Id~aLe~a~~~GirNILALRGD-pP~g~d~~~~~e~gF~yA~DLVr~Irs~YGDyF~IgVAgYPEghpe~~~~~~ 167 (590)
T KOG0564|consen 89 MPKEMIDKALEQAKALGIRNILALRGD-PPIGQDKWVEEEGGFRYAVDLVRYIRSKYGDYFCIGVAGYPEGHPEAPSHDY 167 (590)
T ss_pred ccHHHHHHHHHHHHHhCchhhhhhcCC-CCCCccccccccCCchhHHHHHHHHHHHhCCeEEEEeccCCCCCcCCcccch
Confidence 678999999999999999988433232 23332 235788999999999 454332222 1 11
Q ss_pred -CCHHHHHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec--CCCHHHHHHHHHH
Q 022946 182 -LEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL--GEAEEDRVGLLHT 256 (289)
Q Consensus 182 -l~~e~l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl--get~ed~~~~l~~ 256 (289)
.+-+.+++=.++|.|.|---+ -...|..++.++.++++|+ ++-++.|+ .++...+.+...+
T Consensus 168 ~~Dl~yLk~KvdaGaDFIiTQl------------FYd~e~flkfv~~cR~~gi--~~PIvPGIMPI~~Y~sf~R~~kl 231 (590)
T KOG0564|consen 168 LADLPYLKEKVDAGADFIITQL------------FYDVETFLKFVKDCRAAGI--NVPIVPGIMPIQSYRSFLRIAKL 231 (590)
T ss_pred hhhhHHHHHhhcccchhhhhhh------------hcCHHHHHHHHHHHHHhCC--CCCcccccccchhHHHHHHHHHH
Confidence 122223333345665443211 1356788888888888888 44455565 5566555555444
|
|
| >COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.70 E-value=15 Score=32.14 Aligned_cols=49 Identities=8% Similarity=-0.038 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchh-HHHHHHHHHHHHh
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTN-FNQILEYVKDIRD 170 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~-~~~l~e~i~~ik~ 170 (289)
.+..++.+.++.+.+.|+++|....|+...++.+.. +.+-.++++.+|.
T Consensus 89 ~n~~~i~~~l~~~~~~Gi~~ilaLrGDpp~g~~~~~~~~~s~dLv~lik~ 138 (291)
T COG0685 89 RNRIEIISILKGAAALGIRNILALRGDPPAGDKPGGKDLYSVDLVELIKK 138 (291)
T ss_pred CCHHHHHHHHHHHHHhCCceEEEecCCCCCCCCCCccccCHHHHHHHHHH
Confidence 478999999999999999999876665431222222 5566777777763
|
|
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=86.61 E-value=5.9 Score=35.11 Aligned_cols=80 Identities=15% Similarity=0.153 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC-----chhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHc-C
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR-----KTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKA-G 194 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge-----~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~a-G 194 (289)
.+.++.++.++.+.+.|++.+.+.++....... +......++.++.++ ...+.+..+.+..+.+.++++.+. |
T Consensus 225 ~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~ 304 (327)
T cd02803 225 LTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGK 304 (327)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCC
Confidence 356777788888888888888776543211000 000123445555555 346677777676777877777777 6
Q ss_pred CCeEecC
Q 022946 195 LTAYNHN 201 (289)
Q Consensus 195 ~~~v~i~ 201 (289)
+|.|.++
T Consensus 305 aD~V~ig 311 (327)
T cd02803 305 ADLVALG 311 (327)
T ss_pred CCeeeec
Confidence 8887775
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=86.56 E-value=9.7 Score=32.85 Aligned_cols=23 Identities=9% Similarity=0.218 Sum_probs=12.3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEe
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMG 145 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~ 145 (289)
+++.+.+.++.+.+.|++.|.+.
T Consensus 136 ~~~~~~~~~~~~~~~g~~~i~l~ 158 (266)
T cd07944 136 SDEELLELLELVNEIKPDVFYIV 158 (266)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEe
Confidence 44555555555555555555553
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=86.50 E-value=20 Score=30.70 Aligned_cols=81 Identities=9% Similarity=0.143 Sum_probs=51.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEeccc----------------------CCCCCCc-hhHHHHHHHHHHHHh-cCceEEE
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAW----------------------RDTIGRK-TNFNQILEYVKDIRD-MGMEVCC 177 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~----------------------~~~~ge~-~~~~~l~e~i~~ik~-~~~~i~~ 177 (289)
++.||..+..+.+.++|+..|.+.... ....|.. ..-..+.+.++.+|+ .++.+.+
T Consensus 115 LP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~v 194 (250)
T PLN02591 115 LPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAV 194 (250)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEE
Confidence 788888888888888888877665311 0011221 112445555666664 3566666
Q ss_pred eCCCCCHHHHHHHHHcCCCeEecCC
Q 022946 178 TLGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 178 ~~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
-.|.-+.+.++++.++|.|.+-+|=
T Consensus 195 GFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 195 GFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred eCCCCCHHHHHHHHhcCCCEEEECH
Confidence 6777777888888888888777653
|
|
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=86.40 E-value=11 Score=32.56 Aligned_cols=81 Identities=9% Similarity=0.026 Sum_probs=53.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecc----------------------cCCCCCCc-hhHHHHHHHHHHHHh-cCceEEE
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAA----------------------WRDTIGRK-TNFNQILEYVKDIRD-MGMEVCC 177 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~----------------------~~~~~ge~-~~~~~l~e~i~~ik~-~~~~i~~ 177 (289)
++.||..+..+.++++|+..+.+..- -....|.. ...+.+.++++.+|+ .+..+.+
T Consensus 128 LP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~v 207 (263)
T CHL00200 128 LPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIIL 207 (263)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEE
Confidence 67788777777777888776655431 11112222 233556666777764 3566667
Q ss_pred eCCCCCHHHHHHHHHcCCCeEecCC
Q 022946 178 TLGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 178 ~~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
--|.-+.+.++.+.++|.|.+-+|-
T Consensus 208 GFGI~~~e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 208 GFGISTSEQIKQIKGWNINGIVIGS 232 (263)
T ss_pred ECCcCCHHHHHHHHhcCCCEEEECH
Confidence 7777778888888888888887764
|
|
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=86.40 E-value=3.4 Score=35.47 Aligned_cols=67 Identities=13% Similarity=-0.025 Sum_probs=45.6
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecCC
Q 022946 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 128 ~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
++.++...+.|++.++++.-+ .|++.+. ++++++.+.++.+..-.|.- .+.++.+.++|+++|.++=
T Consensus 46 ~~~A~~~~~~Ga~~lHvVDLd---gg~~~n~----~~i~~i~~~~~~vqvGGGIR-~e~i~~~l~~Ga~rViigT 112 (262)
T PLN02446 46 AEFAEMYKRDGLTGGHVIMLG---ADDASLA----AALEALRAYPGGLQVGGGVN-SENAMSYLDAGASHVIVTS 112 (262)
T ss_pred HHHHHHHHHCCCCEEEEEECC---CCCcccH----HHHHHHHhCCCCEEEeCCcc-HHHHHHHHHcCCCEEEEch
Confidence 555566778999999987632 2445453 33333333456666667765 4999999999999998863
|
|
| >KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.33 E-value=5.3 Score=36.35 Aligned_cols=101 Identities=17% Similarity=0.178 Sum_probs=66.4
Q ss_pred HHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCC-CCCHHHHHHHHHcCCCeEecCCCch-HH
Q 022946 130 AAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG-MLEKHQAIELKKAGLTAYNHNLDTS-RE 207 (289)
Q Consensus 130 ~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g-~l~~e~l~~L~~aG~~~v~i~let~-~~ 207 (289)
.++.+...|++.|++-+.. | +-.+-+++++.+|+...+..+-.| .++.+..+.|..+|+|.+.+|+-+. -=
T Consensus 255 rl~ll~~aGvdvviLDSSq----G---nS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVGMGsGSiC 327 (503)
T KOG2550|consen 255 RLDLLVQAGVDVVILDSSQ----G---NSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVGMGSGSIC 327 (503)
T ss_pred HHHHhhhcCCcEEEEecCC----C---cchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccCceeEeccccCcee
Confidence 3445567899988885422 2 335678888888866544333333 4889999999999999999988664 11
Q ss_pred HHhccC--CCCCHHHHHHHHHHHHHcCCceee
Q 022946 208 FYSKII--TTRSYDERLETLKHVREAGINVCS 237 (289)
Q Consensus 208 ~~~~i~--~~~~~~~~~~~i~~~~~~Gi~v~~ 237 (289)
+-++++ .......+.+..+.++..|+++-+
T Consensus 328 iTqevma~GrpQ~TAVy~va~~A~q~gvpviA 359 (503)
T KOG2550|consen 328 ITQKVMACGRPQGTAVYKVAEFANQFGVPCIA 359 (503)
T ss_pred eeceeeeccCCcccchhhHHHHHHhcCCceee
Confidence 112121 112345677888888888887644
|
|
| >cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=85.94 E-value=11 Score=32.26 Aligned_cols=78 Identities=15% Similarity=0.241 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-cC---ceEEEe--CCCCCHHHHHHHHHcCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MG---MEVCCT--LGMLEKHQAIELKKAGL 195 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~~---~~i~~~--~g~l~~e~l~~L~~aG~ 195 (289)
.+++.+.+.++.+.+.|++.|.+.. +.|- ..-..+.++++.+++ .+ +.++.+ .|.-....+..+ ++|+
T Consensus 138 ~~~~~~~~~~~~~~~~G~d~i~l~D----T~G~-~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~AN~laAi-~aGa 211 (263)
T cd07943 138 ASPEELAEQAKLMESYGADCVYVTD----SAGA-MLPDDVRERVRALREALDPTPVGFHGHNNLGLAVANSLAAV-EAGA 211 (263)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcC----CCCC-cCHHHHHHHHHHHHHhCCCceEEEEecCCcchHHHHHHHHH-HhCC
Confidence 4678888888888888888887743 1221 122445555555542 22 233333 454334444444 5788
Q ss_pred CeEecCCCch
Q 022946 196 TAYNHNLDTS 205 (289)
Q Consensus 196 ~~v~i~let~ 205 (289)
+.|..++.+.
T Consensus 212 ~~vd~s~~Gl 221 (263)
T cd07943 212 TRIDGSLAGL 221 (263)
T ss_pred CEEEeecccc
Confidence 8888877665
|
4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate |
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=85.65 E-value=3.7 Score=33.66 Aligned_cols=68 Identities=18% Similarity=0.116 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCC-CCCHHHHHHHHHcCCCeEe
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG-MLEKHQAIELKKAGLTAYN 199 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g-~l~~e~l~~L~~aG~~~v~ 199 (289)
.+.++..+.++.+.+.|++.+.++-.. | ...+.++.+++..-++.+-.| .++.+.++...++|.+.+.
T Consensus 17 ~~~~~a~~~~~al~~gGi~~iEiT~~t------~----~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~Fiv 85 (196)
T PF01081_consen 17 DDPEDAVPIAEALIEGGIRAIEITLRT------P----NALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIV 85 (196)
T ss_dssp SSGGGHHHHHHHHHHTT--EEEEETTS------T----THHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCC------c----cHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEE
Confidence 467888999999999999988876411 2 234455555532223444444 4899999999999997654
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=85.49 E-value=23 Score=31.91 Aligned_cols=106 Identities=15% Similarity=0.241 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCc----hhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCe
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK----TNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTA 197 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~----~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~ 197 (289)
+.+++++.++.+++.|++-+ ..|.+. +--.| ..-+.-++++++++ +.|+.+.++. .+.+.++.+.+. +|.
T Consensus 113 s~eq~l~~A~~lk~~g~~~~-r~g~~k-pRtsp~sf~G~g~~gl~~L~~~~~e~Gl~~~tev--~d~~~v~~~~~~-~d~ 187 (352)
T PRK13396 113 NEEMIVETAKRVKAAGAKFL-RGGAYK-PRTSPYAFQGHGESALELLAAAREATGLGIITEV--MDAADLEKIAEV-ADV 187 (352)
T ss_pred CHHHHHHHHHHHHHcCCCEE-Eeeeec-CCCCCcccCCchHHHHHHHHHHHHHcCCcEEEee--CCHHHHHHHHhh-CCe
Confidence 67899999999999887644 333222 11111 12256667777766 7799887654 678889999888 899
Q ss_pred EecCCCc-h-HHHHhccCC---------C--CCHHHHHHHHHHHHHcCC
Q 022946 198 YNHNLDT-S-REFYSKIIT---------T--RSYDERLETLKHVREAGI 233 (289)
Q Consensus 198 v~i~let-~-~~~~~~i~~---------~--~~~~~~~~~i~~~~~~Gi 233 (289)
+.++--. . -.+++.+.+ + .+.++|+.+++.+...|-
T Consensus 188 lqIga~~~~n~~LL~~va~t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn 236 (352)
T PRK13396 188 IQVGARNMQNFSLLKKVGAQDKPVLLKRGMAATIDEWLMAAEYILAAGN 236 (352)
T ss_pred EEECcccccCHHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence 9986433 3 445555432 1 268999999999988876
|
|
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=85.36 E-value=5.7 Score=33.33 Aligned_cols=71 Identities=20% Similarity=0.204 Sum_probs=48.4
Q ss_pred HHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHH-HHHcCCCeEecC
Q 022946 127 VMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIE-LKKAGLTAYNHN 201 (289)
Q Consensus 127 i~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~-L~~aG~~~v~i~ 201 (289)
.++.++.+.+.|++.+++.+-...-..+.. -++++++++ ..++++..+.|..+.+.+.. +++.|++.|.++
T Consensus 155 ~~~~~~~~~~~G~d~i~i~~i~~~g~~~g~----~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l~~~gadgV~vg 227 (232)
T TIGR03572 155 PVEWAREAEQLGAGEILLNSIDRDGTMKGY----DLELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAGASAVAAA 227 (232)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCcCCC----CHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHcCCCEEEEe
Confidence 355666777899999988762211111111 245555555 34788888888888888888 999999998875
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=85.32 E-value=26 Score=31.04 Aligned_cols=110 Identities=15% Similarity=0.108 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecc----------cCCCCC-------C---------chhHHHHHHHHHHHHhcCceEE
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAA----------WRDTIG-------R---------KTNFNQILEYVKDIRDMGMEVC 176 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~----------~~~~~g-------e---------~~~~~~l~e~i~~ik~~~~~i~ 176 (289)
+.|...+.++.+++.|++.|-|+.. ...+++ . ...+++..++.+..++.|+.+.
T Consensus 28 ~le~A~~lIdaAk~aGADavKfQt~~~~d~~t~~~~~~~~~i~~~~~~~slyel~e~~~~p~e~~~~Lke~a~~~Gi~~~ 107 (347)
T COG2089 28 DLERAKELIDAAKEAGADAVKFQTFYTPDIMTLESKNVPFKIKTLWDKVSLYELYEEAETPLEWHAQLKEYARKRGIIFF 107 (347)
T ss_pred cHHHHHHHHHHHHHcCcceeeeecccccccccccccCCccccccccccccHHHHHHHhcCCHHHHHHHHHHHHHcCeEEE
Confidence 6677788888888999988877751 000110 0 0123444455555556677766
Q ss_pred EeCCCCCHHHHHHHHHcCCCeEec-CCCch-HHHHhccCCC----------CCHHHHHHHHHHHHHcCCc
Q 022946 177 CTLGMLEKHQAIELKKAGLTAYNH-NLDTS-REFYSKIITT----------RSYDERLETLKHVREAGIN 234 (289)
Q Consensus 177 ~~~g~l~~e~l~~L~~aG~~~v~i-~let~-~~~~~~i~~~----------~~~~~~~~~i~~~~~~Gi~ 234 (289)
+++ ++...++.|...++..+-+ |.|.. ..+.+.+... .+.+++.++++.+++.|.+
T Consensus 108 SSP--fd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~~~kPiIlSTGma~~~ei~~av~~~r~~g~~ 175 (347)
T COG2089 108 SSP--FDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAKKGKPIILSTGMATIEEIEEAVAILRENGNP 175 (347)
T ss_pred ecC--CCHHHHHHHHhcCCCeEEecCccccChHHHHHHHhcCCCEEEEcccccHHHHHHHHHHHHhcCCC
Confidence 655 6788888888888888876 55554 4444443321 1345566666666665554
|
|
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.32 E-value=16 Score=34.58 Aligned_cols=118 Identities=15% Similarity=0.228 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--CceEEEeCCCCCHHHHHHHHHcCCCeEecC
Q 022946 124 KDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHN 201 (289)
Q Consensus 124 ~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~ 201 (289)
++. .+.++.+.+.|++.|++.... |.. ...++.++.+++. ++.+.. ....+.+.++.+.++|+|.|.++
T Consensus 240 ~~~-~~~~~~l~~ag~d~i~id~a~----G~s---~~~~~~i~~ik~~~~~~~v~a-G~V~t~~~a~~~~~aGad~I~vg 310 (495)
T PTZ00314 240 PED-IERAAALIEAGVDVLVVDSSQ----GNS---IYQIDMIKKLKSNYPHVDIIA-GNVVTADQAKNLIDAGADGLRIG 310 (495)
T ss_pred HHH-HHHHHHHHHCCCCEEEEecCC----CCc---hHHHHHHHHHHhhCCCceEEE-CCcCCHHHHHHHHHcCCCEEEEC
Confidence 344 778888889999998885421 211 3346778888854 344433 23578999999999999999876
Q ss_pred CCch-HHHHhcc-CCC-CCHHHHHHHHHHHHHcCCceeecEEe--ecCCCHHHHHHHHH
Q 022946 202 LDTS-REFYSKI-ITT-RSYDERLETLKHVREAGINVCSGGII--GLGEAEEDRVGLLH 255 (289)
Q Consensus 202 let~-~~~~~~i-~~~-~~~~~~~~~i~~~~~~Gi~v~~~~i~--Glget~ed~~~~l~ 255 (289)
+-.. -..-+.. .-+ ..+..+.+..+.+++.|+.+ |. |+ -+..|+...+.
T Consensus 311 ~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~v----IadGGi-~~~~di~kAla 364 (495)
T PTZ00314 311 MGSGSICITQEVCAVGRPQASAVYHVARYARERGVPC----IADGGI-KNSGDICKALA 364 (495)
T ss_pred CcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeE----EecCCC-CCHHHHHHHHH
Confidence 5432 1110001 111 23556667777778888664 44 32 35566665554
|
|
| >PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 | Back alignment and domain information |
|---|
Probab=85.11 E-value=6 Score=31.65 Aligned_cols=66 Identities=17% Similarity=0.283 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--CceEEEeCCCCCHHHHHHHHHcCCCeEec
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNH 200 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~i~~~~g~l~~e~l~~L~~aG~~~v~i 200 (289)
+.+|+. ++.+.|++.|-+-. + .| +.+.++++.++.. .+.+..+.| ++.+.+.++.+.|+|.+++
T Consensus 89 ~~ee~~----ea~~~g~d~I~lD~----~--~~---~~~~~~v~~l~~~~~~v~ie~SGG-I~~~ni~~ya~~gvD~isv 154 (169)
T PF01729_consen 89 NLEEAE----EALEAGADIIMLDN----M--SP---EDLKEAVEELRELNPRVKIEASGG-ITLENIAEYAKTGVDVISV 154 (169)
T ss_dssp SHHHHH----HHHHTT-SEEEEES-------CH---HHHHHHHHHHHHHTTTSEEEEESS-SSTTTHHHHHHTT-SEEEE
T ss_pred CHHHHH----HHHHhCCCEEEecC----c--CH---HHHHHHHHHHhhcCCcEEEEEECC-CCHHHHHHHHhcCCCEEEc
Confidence 345544 44557888775522 1 13 5566666655533 355666655 7889999999999999988
Q ss_pred CC
Q 022946 201 NL 202 (289)
Q Consensus 201 ~l 202 (289)
|-
T Consensus 155 g~ 156 (169)
T PF01729_consen 155 GS 156 (169)
T ss_dssp CH
T ss_pred Ch
Confidence 63
|
4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D .... |
| >PRK10812 putative DNAse; Provisional | Back alignment and domain information |
|---|
Probab=85.10 E-value=1.2 Score=38.44 Aligned_cols=49 Identities=12% Similarity=0.076 Sum_probs=41.8
Q ss_pred CCcccc-ccccccccccchHHHHHHHHHhcCCCCCCCHHHHHHhhCCChHHHH
Q 022946 19 SKKFLA-LHSSCSCYSASAAAIEAERTIREGPRHDWSKDDIKSIYDSPVLDLL 70 (289)
Q Consensus 19 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ee~~~l~~~~~~~l~ 70 (289)
-+||++ .|.++.+|.|.++..+++.+++ -.+++.+|+..++..+...++
T Consensus 205 D~P~~~p~~~~g~~n~P~~i~~v~~~ia~---l~g~~~eei~~~~~~N~~~lf 254 (265)
T PRK10812 205 DSPYLAPVPHRGKENQPAMVRDVAEYMAV---LKGVSVEELAQVTTDNFARLF 254 (265)
T ss_pred CCCCCCCcCCCCCCCCcHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHH
Confidence 379998 7899999999999999999998 789999999988766655554
|
|
| >PRK11572 copper homeostasis protein CutC; Provisional | Back alignment and domain information |
|---|
Probab=84.97 E-value=23 Score=30.17 Aligned_cols=115 Identities=10% Similarity=0.114 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCC-C-CHHHHHHHHHcCCCeEec
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM-L-EKHQAIELKKAGLTAYNH 200 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~-l-~~e~l~~L~~aG~~~v~i 200 (289)
..+.+.+.++.+++.|++-|+|+.-. .-| ....+.+.++++..+...+.++.-... . ..+.++.|.+.|+++|.-
T Consensus 71 E~~~M~~di~~~~~~GadGvV~G~L~--~dg-~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~lG~~rILT 147 (248)
T PRK11572 71 EFAAMLEDIATVRELGFPGLVTGVLD--VDG-HVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADLGVARILT 147 (248)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeeEC--CCC-CcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHcCCCEEEC
Confidence 45677788888899999999886522 112 346677777777665444433222111 2 244589999999999975
Q ss_pred CCCchHHHHhccCCCCCHHHHHHHHHHHHH-cCCceeecEEeecCCCHHHHHHHH
Q 022946 201 NLDTSREFYSKIITTRSYDERLETLKHVRE-AGINVCSGGIIGLGEAEEDRVGLL 254 (289)
Q Consensus 201 ~let~~~~~~~i~~~~~~~~~~~~i~~~~~-~Gi~v~~~~i~Glget~ed~~~~l 254 (289)
+=.. .+..+-++.++.+.+ ++ .. .+|.|=|-+.+.+.+..
T Consensus 148 SGg~-----------~~a~~g~~~L~~lv~~a~-~~--~Im~GgGV~~~Nv~~l~ 188 (248)
T PRK11572 148 SGQQ-----------QDAEQGLSLIMELIAASD-GP--IIMAGAGVRLSNLHKFL 188 (248)
T ss_pred CCCC-----------CCHHHHHHHHHHHHHhcC-CC--EEEeCCCCCHHHHHHHH
Confidence 4211 234444555555544 33 21 17888888888877753
|
|
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=84.85 E-value=16 Score=29.67 Aligned_cols=109 Identities=17% Similarity=0.185 Sum_probs=63.6
Q ss_pred HHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HH
Q 022946 129 QAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-RE 207 (289)
Q Consensus 129 ~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~ 207 (289)
++++.+.+.|.+-|.+-+- ..+.. ..+.++++++++.+.-+... .-+.|....-.++|+|.|.--+-++ ++
T Consensus 55 ~ev~~l~~aGadIIAlDaT-----~R~Rp-~~l~~li~~i~~~~~l~MAD--ist~ee~~~A~~~G~D~I~TTLsGYT~~ 126 (192)
T PF04131_consen 55 KEVDALAEAGADIIALDAT-----DRPRP-ETLEELIREIKEKYQLVMAD--ISTLEEAINAAELGFDIIGTTLSGYTPY 126 (192)
T ss_dssp HHHHHHHHCT-SEEEEE-S-----SSS-S-S-HHHHHHHHHHCTSEEEEE---SSHHHHHHHHHTT-SEEE-TTTTSSTT
T ss_pred HHHHHHHHcCCCEEEEecC-----CCCCC-cCHHHHHHHHHHhCcEEeee--cCCHHHHHHHHHcCCCEEEcccccCCCC
Confidence 3444667789998888652 22333 77888888888666434333 3567888888999999999888776 54
Q ss_pred HHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHH
Q 022946 208 FYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLH 255 (289)
Q Consensus 208 ~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~ 255 (289)
.-. ...-++.++.+.+.+.++ +.=|--.|+++..+.++
T Consensus 127 t~~-------~~pD~~lv~~l~~~~~pv---IaEGri~tpe~a~~al~ 164 (192)
T PF04131_consen 127 TKG-------DGPDFELVRELVQADVPV---IAEGRIHTPEQAAKALE 164 (192)
T ss_dssp STT-------SSHHHHHHHHHHHTTSEE---EEESS--SHHHHHHHHH
T ss_pred CCC-------CCCCHHHHHHHHhCCCcE---eecCCCCCHHHHHHHHh
Confidence 433 122345566666666553 12244567777666654
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=84.80 E-value=10 Score=31.63 Aligned_cols=69 Identities=22% Similarity=0.229 Sum_probs=45.2
Q ss_pred HHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecC
Q 022946 129 QAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 201 (289)
Q Consensus 129 ~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~ 201 (289)
+.++.+.+.|++.+++.+-...-...... +++++.+. ...+.+....|..+.+.++.+++.|++.+.++
T Consensus 149 ~~~~~~~~~g~~~ii~~~~~~~g~~~g~~----~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~~Gadgv~ig 218 (230)
T TIGR00007 149 ELAKRLEELGLEGIIYTDISRDGTLSGPN----FELTKELVKAVNVPVIASGGVSSIDDLIALKKLGVYGVIVG 218 (230)
T ss_pred HHHHHHHhCCCCEEEEEeecCCCCcCCCC----HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEEe
Confidence 34455668899988775432211111112 34444444 34678888889999999999999999998875
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=84.52 E-value=12 Score=31.89 Aligned_cols=76 Identities=14% Similarity=0.005 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecCC
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
++.+ .++...+.|.+.+++..-+... |.+.+.+.+.++.+ ...+++....|.-+.+.++.+.++|++++.++-
T Consensus 32 ~p~~---~a~~~~~~g~~~lhivDLd~a~-g~~~n~~~i~~i~~---~~~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT 104 (243)
T TIGR01919 32 SLES---AAKWWEQGGAEWIHLVDLDAAF-GGGNNEMMLEEVVK---LLVVVEELSGGRRDDSSLRAALTGGRARVNGGT 104 (243)
T ss_pred CHHH---HHHHHHhCCCeEEEEEECCCCC-CCcchHHHHHHHHH---HCCCCEEEcCCCCCHHHHHHHHHcCCCEEEECc
Confidence 5644 3445567888888886533222 44445443333333 345777788899999999999999999998876
Q ss_pred Cch
Q 022946 203 DTS 205 (289)
Q Consensus 203 et~ 205 (289)
.+.
T Consensus 105 ~a~ 107 (243)
T TIGR01919 105 AAL 107 (243)
T ss_pred hhh
Confidence 554
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=84.46 E-value=21 Score=29.17 Aligned_cols=79 Identities=10% Similarity=0.064 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc-CceEEEeCC-CCCHHHHHHHHHcCCCeEe
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GMEVCCTLG-MLEKHQAIELKKAGLTAYN 199 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~-~~~i~~~~g-~l~~e~l~~L~~aG~~~v~ 199 (289)
.+.+.+.+.++.+.+.|++.+.+.-.+..... ....-.+.++.+++. ...+.+..- .-..+.++.++++|++.+.
T Consensus 8 ~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~---~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~ 84 (210)
T TIGR01163 8 ADFARLGEEVKAVEEAGADWIHVDVMDGHFVP---NLTFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIIT 84 (210)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC---CcccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEE
Confidence 35678888899999999999988521111111 112344555555532 333211111 1135668999999999987
Q ss_pred cCCC
Q 022946 200 HNLD 203 (289)
Q Consensus 200 i~le 203 (289)
+..+
T Consensus 85 vh~~ 88 (210)
T TIGR01163 85 VHPE 88 (210)
T ss_pred EccC
Confidence 6544
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. |
| >TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form | Back alignment and domain information |
|---|
Probab=84.43 E-value=26 Score=30.28 Aligned_cols=50 Identities=18% Similarity=0.122 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC---chhHHHHHHHHHHHHhc
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR---KTNFNQILEYVKDIRDM 171 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge---~~~~~~l~e~i~~ik~~ 171 (289)
++..++...+..+.+.|++.+...+|+....+. +..++.-.++++.+++.
T Consensus 70 ~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~ 122 (272)
T TIGR00676 70 ATREEIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNE 122 (272)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHh
Confidence 467888888888899999999765555443231 12345677777777643
|
This protein is an FAD-containing flavoprotein. |
| >COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=84.38 E-value=29 Score=30.85 Aligned_cols=110 Identities=15% Similarity=0.225 Sum_probs=71.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCce-EEEeCCCCCHHHHHHHHHcCC-CeEe
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME-VCCTLGMLEKHQAIELKKAGL-TAYN 199 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~-i~~~~g~l~~e~l~~L~~aG~-~~v~ 199 (289)
.+..+|++.+... ++..+.++..+ -.+....+.+|+.|+. +.++...++++...++-.-|. +.|-
T Consensus 74 ~dl~eIi~~l~~~---~~~~islTTNG----------~~L~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT~~~~~~~Vl 140 (322)
T COG2896 74 KDLDEIIARLARL---GIRDLSLTTNG----------VLLARRAADLKEAGLDRVNVSLDSLDPEKFRKITGRDRLDRVL 140 (322)
T ss_pred cCHHHHHHHHhhc---ccceEEEecch----------hhHHHHHHHHHHcCCcEEEeecccCCHHHHHHHhCCCcHHHHH
Confidence 4677777776644 88888887532 2355666677877876 777888888888888874332 2223
Q ss_pred cCCCch-HHHHh--c----cCCCCCHHHHHHHHHHHHHcCCceeecEEeecC
Q 022946 200 HNLDTS-REFYS--K----IITTRSYDERLETLKHVREAGINVCSGGIIGLG 244 (289)
Q Consensus 200 i~let~-~~~~~--~----i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glg 244 (289)
=|++.+ +.-+. + +.++-+-+++.+.++.++..|+.+...-..-+|
T Consensus 141 ~GI~~A~~~Gl~pVKlN~Vv~kgvNd~ei~~l~e~~~~~~~~lrfIE~m~~g 192 (322)
T COG2896 141 EGIDAAVEAGLTPVKLNTVLMKGVNDDEIEDLLEFAKERGAQLRFIELMPLG 192 (322)
T ss_pred HHHHHHHHcCCCceEEEEEEecCCCHHHHHHHHHHHhhcCCceEEEEEeecC
Confidence 345544 33222 1 224557899999999999999876554333333
|
|
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=84.37 E-value=24 Score=29.80 Aligned_cols=133 Identities=13% Similarity=0.081 Sum_probs=82.1
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHH---HHcCCCeEecCCCc
Q 022946 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIEL---KKAGLTAYNHNLDT 204 (289)
Q Consensus 128 ~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L---~~aG~~~v~i~let 204 (289)
.+..+.+.+.|-+++.+-. .....++.+.+..++ ....+..+.+..+.+.+.++ ...+++.|.+++-.
T Consensus 32 ~~a~~~~~~rgr~ef~~~~--------e~~~~~i~~e~~~~~-~~~~vivnv~~~~~ee~~~~a~~v~~~~d~IdiN~gC 102 (231)
T TIGR00736 32 YKASRDIEKRGRKEFSFNL--------EEFNSYIIEQIKKAE-SRALVSVNVRFVDLEEAYDVLLTIAEHADIIEINAHC 102 (231)
T ss_pred HHHHHHHHHcCCcccCcCc--------ccHHHHHHHHHHHHh-hcCCEEEEEecCCHHHHHHHHHHHhcCCCEEEEECCC
Confidence 3344556667767763211 124466677777675 33356666666555544332 23478899998888
Q ss_pred h-HHHHhccCC---CCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccce
Q 022946 205 S-REFYSKIIT---TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALL 273 (289)
Q Consensus 205 ~-~~~~~~i~~---~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~ 273 (289)
. +++.+.-.+ -++++.+.+.++.+++.+++|..-+-.|. +.++..+..+.+.+. +.+.+.+....
T Consensus 103 P~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~--~~~~~~~~a~~l~~a--Gad~i~Vd~~~ 171 (231)
T TIGR00736 103 RQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGNC--IPLDELIDALNLVDD--GFDGIHVDAMY 171 (231)
T ss_pred CcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCCC--CcchHHHHHHHHHHc--CCCEEEEeeCC
Confidence 7 666544333 23678888888888877777766666554 334566676777777 57888776543
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >PRK12999 pyruvate carboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=84.10 E-value=44 Score=35.26 Aligned_cols=134 Identities=10% Similarity=0.021 Sum_probs=73.2
Q ss_pred CCCHHHHHHHHHHHHHc--CCcEEEEecccCCC-----CCCchhHHHHHHHHHHHHhcCceEEEe----------CCCCC
Q 022946 121 LMTKDAVMQAAQKAKEA--GSTRFCMGAAWRDT-----IGRKTNFNQILEYVKDIRDMGMEVCCT----------LGMLE 183 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~--g~~~i~i~~~~~~~-----~ge~~~~~~l~e~i~~ik~~~~~i~~~----------~g~l~ 183 (289)
.++.++.+..+..+.+. |+..+-+.||.... ..+ ..++++..+-+.+....+..... ++...
T Consensus 551 r~~~~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~e-~p~erl~~~r~~~~~~~~q~l~Rg~n~vgy~~yp~~v~ 629 (1146)
T PRK12999 551 RVRTKDLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLKE-DPWERLAELREAAPNVLFQMLLRGSNAVGYTNYPDNVV 629 (1146)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccCC-CHHHHHHHHHHhCCCCeEEEEecccccccccCCCchHH
Confidence 37889999999999998 99998876542221 111 23333333333333222222221 11233
Q ss_pred HHHHHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEee------c--CCCHHHHHHHHH
Q 022946 184 KHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIG------L--GEAEEDRVGLLH 255 (289)
Q Consensus 184 ~e~l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~G------l--get~ed~~~~l~ 255 (289)
.+.++...++|++.+.+.. +. ...+....+++.+++.|......+-+= . ..+.+-+.+.++
T Consensus 630 ~~~i~~a~~~Gid~~rifd-~l----------nd~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~ 698 (1146)
T PRK12999 630 RAFVREAAAAGIDVFRIFD-SL----------NWVENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAK 698 (1146)
T ss_pred HHHHHHHHHcCCCEEEEec-cC----------ChHHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHH
Confidence 4557778888999887653 21 224456666777777775322222111 1 135666666666
Q ss_pred HHhcCCCCCCeee
Q 022946 256 TLATLPTHPESVP 268 (289)
Q Consensus 256 ~l~~l~~~~~~v~ 268 (289)
.+.++ +.+.+.
T Consensus 699 ~l~~~--Ga~~i~ 709 (1146)
T PRK12999 699 ELEKA--GAHILA 709 (1146)
T ss_pred HHHHc--CCCEEE
Confidence 67666 345443
|
|
| >PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds [] | Back alignment and domain information |
|---|
Probab=84.00 E-value=19 Score=30.56 Aligned_cols=19 Identities=21% Similarity=0.116 Sum_probs=9.1
Q ss_pred HHHHHHHHHcCCCeEecCC
Q 022946 184 KHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 184 ~e~l~~L~~aG~~~v~i~l 202 (289)
++.++..++.|++.|.+|-
T Consensus 87 ~~yl~~~k~lGf~~IEiSd 105 (244)
T PF02679_consen 87 DEYLEECKELGFDAIEISD 105 (244)
T ss_dssp HHHHHHHHHCT-SEEEE--
T ss_pred HHHHHHHHHcCCCEEEecC
Confidence 4445555666666655543
|
Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A. |
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.37 E-value=23 Score=30.48 Aligned_cols=61 Identities=16% Similarity=0.197 Sum_probs=37.9
Q ss_pred eEEEeCCC----CCHHHHHHHHHcCCCeEecCCCch----------HHHHhccCCCCCHHHHHHHHHHHHHcCCc
Q 022946 174 EVCCTLGM----LEKHQAIELKKAGLTAYNHNLDTS----------REFYSKIITTRSYDERLETLKHVREAGIN 234 (289)
Q Consensus 174 ~i~~~~g~----l~~e~l~~L~~aG~~~v~i~let~----------~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~ 234 (289)
-...+.|. .+.+.++.|.++|+|.+.+|+-.+ ....+.+..+.+.++.++.++.+++.+..
T Consensus 20 i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~ 94 (265)
T COG0159 20 IPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVK 94 (265)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCC
Confidence 34455555 234445666677888887776442 12344455567788888888888876554
|
|
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.36 E-value=29 Score=29.93 Aligned_cols=126 Identities=13% Similarity=0.162 Sum_probs=76.4
Q ss_pred CCHHHHHHHHHHHHHcCCc-EEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCC---CCHHHHHHHHHcCCCe
Q 022946 122 MTKDAVMQAAQKAKEAGST-RFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM---LEKHQAIELKKAGLTA 197 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~-~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~---l~~e~l~~L~~aG~~~ 197 (289)
++.+.+++.++.+.+.+.+ -+.+.+ +..|.+...+.+.++.+++.|+.-..-... ...+..+..++.|++.
T Consensus 76 ~t~~~~lel~~~~r~~~~~~Pivlm~-----Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~ 150 (265)
T COG0159 76 VTLEDTLELVEEIRAKGVKVPIVLMT-----YYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDP 150 (265)
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEE-----eccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcE
Confidence 6888899999888866544 233333 233555566777777788888764333332 2333456666789998
Q ss_pred Eec-CCCchHHHHhccCC---C---------------CCHHHHHHHHHHHHHc-CCceeecEEeec-CCCHHHHHHHHHH
Q 022946 198 YNH-NLDTSREFYSKIIT---T---------------RSYDERLETLKHVREA-GINVCSGGIIGL-GEAEEDRVGLLHT 256 (289)
Q Consensus 198 v~i-~let~~~~~~~i~~---~---------------~~~~~~~~~i~~~~~~-Gi~v~~~~i~Gl-get~ed~~~~l~~ 256 (289)
|.+ +..|.++..+++.. + .....+.+.++.+|+. +.++ .+|+ -.+.++..+..+.
T Consensus 151 I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv----~vGFGIs~~e~~~~v~~~ 226 (265)
T COG0159 151 IFLVAPTTPDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDVPV----LVGFGISSPEQAAQVAEA 226 (265)
T ss_pred EEEeCCCCCHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhcCCCe----EEecCcCCHHHHHHHHHh
Confidence 886 44444555554432 1 0123467777777774 4444 7888 5677777766665
|
|
| >PRK11858 aksA trans-homoaconitate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=83.23 E-value=36 Score=31.00 Aligned_cols=78 Identities=24% Similarity=0.395 Sum_probs=44.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-cC--ceEEEe--CCCCCHHHHHHHHHcCCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MG--MEVCCT--LGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~~--~~i~~~--~g~l~~e~l~~L~~aG~~ 196 (289)
.+++.+.+.++.+.+.|++.|.+.. +.|- ..-..+.++++.+++ .+ +.++++ .|.-....+..+ ++|++
T Consensus 142 ~~~~~l~~~~~~~~~~Ga~~I~l~D----T~G~-~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~AN~laAv-~aGa~ 215 (378)
T PRK11858 142 TDLDFLIEFAKAAEEAGADRVRFCD----TVGI-LDPFTMYELVKELVEAVDIPIEVHCHNDFGMATANALAGI-EAGAK 215 (378)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEec----cCCC-CCHHHHHHHHHHHHHhcCCeEEEEecCCcCHHHHHHHHHH-HcCCC
Confidence 3678888888888888888887753 1221 122344555555442 22 333443 344444444444 57888
Q ss_pred eEecCCCch
Q 022946 197 AYNHNLDTS 205 (289)
Q Consensus 197 ~v~i~let~ 205 (289)
.|..++.+.
T Consensus 216 ~vd~tv~Gl 224 (378)
T PRK11858 216 QVHTTVNGL 224 (378)
T ss_pred EEEEeeccc
Confidence 888777664
|
|
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=83.21 E-value=11 Score=31.64 Aligned_cols=71 Identities=18% Similarity=0.195 Sum_probs=45.6
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCC
Q 022946 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 128 ~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
++.++.+.+.|+..+++.+-..+-......++. ++.+. ...+++....|..+.+.+..++++|++.+.++=
T Consensus 152 ~~~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~----i~~i~~~~~iPvia~GGI~~~~di~~~~~~Ga~gv~vgs 223 (241)
T PRK13585 152 VEAAKRFEELGAGSILFTNVDVEGLLEGVNTEP----VKELVDSVDIPVIASGGVTTLDDLRALKEAGAAGVVVGS 223 (241)
T ss_pred HHHHHHHHHcCCCEEEEEeecCCCCcCCCCHHH----HHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEEH
Confidence 444445567899999886532211111123333 33333 346788888888888889999999999988753
|
|
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=83.04 E-value=12 Score=32.43 Aligned_cols=80 Identities=15% Similarity=0.184 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCC---------------CC--CchhHHHHHHHHHHHH-hc--CceEEEeCCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDT---------------IG--RKTNFNQILEYVKDIR-DM--GMEVCCTLGM 181 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~---------------~g--e~~~~~~l~e~i~~ik-~~--~~~i~~~~g~ 181 (289)
.+.+++.+.++.+.+.|++.+++.+..... .| .+.....-++.++.++ .. ++.+..+.|.
T Consensus 173 ~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI 252 (289)
T cd02810 173 FDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGI 252 (289)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCC
Confidence 467788888888889999988875421100 00 0111233466777776 34 6788888898
Q ss_pred CCHHHHHHHHHcCCCeEecC
Q 022946 182 LEKHQAIELKKAGLTAYNHN 201 (289)
Q Consensus 182 l~~e~l~~L~~aG~~~v~i~ 201 (289)
.+.+.+.++..+|++.|.++
T Consensus 253 ~~~~da~~~l~~GAd~V~vg 272 (289)
T cd02810 253 DSGEDVLEMLMAGASAVQVA 272 (289)
T ss_pred CCHHHHHHHHHcCccHheEc
Confidence 88899888888999988875
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=83.04 E-value=17 Score=31.08 Aligned_cols=97 Identities=16% Similarity=0.144 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcC-CCeEecCC
Q 022946 125 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAG-LTAYNHNL 202 (289)
Q Consensus 125 eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG-~~~v~i~l 202 (289)
++..+.++.+.+.|++.+.+.+-...-......+ ++++.++ ..++++..+.|..+.+.+.++.+.| ++.+.++-
T Consensus 155 ~~~~~~~~~l~~~G~~~iivt~i~~~g~~~g~~~----~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~ 230 (254)
T TIGR00735 155 LDAVEWAKEVEKLGAGEILLTSMDKDGTKSGYDL----ELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAAS 230 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEEeCcCcccCCCCCCH----HHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhH
Confidence 4445666677789999988855322111111222 3444444 3477888888999999998988887 98876653
Q ss_pred CchHHHHhccCCCCCHHHHHHHHHHHHHcCCce
Q 022946 203 DTSREFYSKIITTRSYDERLETLKHVREAGINV 235 (289)
Q Consensus 203 et~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v 235 (289)
..|.. ..+++ +..+.+++.|+++
T Consensus 231 ----a~~~~---~~~~~---~~~~~~~~~gi~~ 253 (254)
T TIGR00735 231 ----VFHYR---EITIG---EVKEYLAERGIPV 253 (254)
T ss_pred ----HHhCC---CCCHH---HHHHHHHHCCCcc
Confidence 22221 23443 4455666778764
|
|
| >COG1751 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.94 E-value=21 Score=27.96 Aligned_cols=110 Identities=25% Similarity=0.357 Sum_probs=65.8
Q ss_pred CHHHHHH-HHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEe------CC--CCCHHHHHHHHHc
Q 022946 123 TKDAVMQ-AAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCT------LG--MLEKHQAIELKKA 193 (289)
Q Consensus 123 ~~eei~~-~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~------~g--~l~~e~l~~L~~a 193 (289)
..|+.++ .++++.+.|++++++.+. .|. ....++++++. .+.+-+.+. .| .+++|.-++|++.
T Consensus 11 NT~~tle~a~erA~elgik~~vVAS~----tG~--tA~k~lemveg--~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~er 82 (186)
T COG1751 11 NTDETLEIAVERAKELGIKHIVVASS----TGY--TALKALEMVEG--DLKVVVVTHHAGFEEKGTQEMDEEVRKELKER 82 (186)
T ss_pred chHHHHHHHHHHHHhcCcceEEEEec----ccH--HHHHHHHhccc--CceEEEEEeecccccCCceecCHHHHHHHHHc
Confidence 3455555 457888999999988652 231 22344555432 122211111 22 3788999999999
Q ss_pred CCCeEe--cCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEe
Q 022946 194 GLTAYN--HNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGII 241 (289)
Q Consensus 194 G~~~v~--i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~ 241 (289)
|.+.+. +.+.+. +.+.+++..-...+-+-++++ +-..|++|+..+-+
T Consensus 83 Ga~v~~~sHalSg~eRsis~kfGG~~p~eiiAetLR-~fg~G~KVcvEIti 132 (186)
T COG1751 83 GAKVLTQSHALSGVERSISRKFGGYSPLEIIAETLR-MFGQGVKVCVEITI 132 (186)
T ss_pred CceeeeehhhhhcchhhhhhhcCCcchHHHHHHHHH-HhcCCcEEEEEEEE
Confidence 987665 455555 555555544445677777777 66678887765443
|
|
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=82.93 E-value=29 Score=29.73 Aligned_cols=135 Identities=16% Similarity=0.218 Sum_probs=76.3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCC-Cc-------------hhHHHHHHHHHHHHhc--CceEEEeCCCCC---
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG-RK-------------TNFNQILEYVKDIRDM--GMEVCCTLGMLE--- 183 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~g-e~-------------~~~~~l~e~i~~ik~~--~~~i~~~~g~l~--- 183 (289)
+.+.-.+.++.+.+.|++-+.++---.+|.. .| ...+.+++.++.+++. .+.+. ..++.+
T Consensus 22 ~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv-~m~Y~Npi~ 100 (256)
T TIGR00262 22 TLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIG-LLTYYNLIF 100 (256)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE-EEEeccHHh
Confidence 6788888888888999998888642222221 11 1236788888888843 44432 222222
Q ss_pred ----HHHHHHHHHcCCCeEecCCCch---HHHHhccCC----------CCCHHHHHHHHHHHHHcCCceeecEEeec-CC
Q 022946 184 ----KHQAIELKKAGLTAYNHNLDTS---REFYSKIIT----------TRSYDERLETLKHVREAGINVCSGGIIGL-GE 245 (289)
Q Consensus 184 ----~e~l~~L~~aG~~~v~i~let~---~~~~~~i~~----------~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-ge 245 (289)
++.++.++++|++.+.+.-+.. .+..+.++. +.+..++++.+... ..|+-...+. .|. |+
T Consensus 101 ~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~-~~gfiy~vs~-~G~TG~ 178 (256)
T TIGR00262 101 RKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEK-SQGFVYLVSR-AGVTGA 178 (256)
T ss_pred hhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHh-CCCCEEEEEC-CCCCCC
Confidence 5678999999999988765443 223332221 22333333333332 1344332232 377 65
Q ss_pred C---HHHHHHHHHHHhcC
Q 022946 246 A---EEDRVGLLHTLATL 260 (289)
Q Consensus 246 t---~ed~~~~l~~l~~l 260 (289)
. ..++.+.++.+++.
T Consensus 179 ~~~~~~~~~~~i~~lr~~ 196 (256)
T TIGR00262 179 RNRAASALNELVKRLKAY 196 (256)
T ss_pred cccCChhHHHHHHHHHhh
Confidence 3 35577777777765
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Probab=82.77 E-value=28 Score=33.82 Aligned_cols=94 Identities=16% Similarity=0.247 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcC--ceEEE--eCCCCCHHHHHHHHHcCCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMG--MEVCC--TLGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~--~~i~~--~~g~l~~e~l~~L~~aG~~ 196 (289)
.+++.+++.++.+.+.|++.|+|.. +.|- ..-..+.++++.++ ..+ +.+++ +.|.-....+ .-.++|++
T Consensus 151 ~t~~~~~~~a~~l~~~Gad~I~i~D----t~G~-~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~l-aAv~aGad 224 (592)
T PRK09282 151 HTIEKYVELAKELEEMGCDSICIKD----MAGL-LTPYAAYELVKALKEEVDLPVQLHSHCTSGLAPMTYL-KAVEAGVD 224 (592)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECC----cCCC-cCHHHHHHHHHHHHHhCCCeEEEEEcCCCCcHHHHHH-HHHHhCCC
Confidence 4789999999999999999999854 1221 12245666666666 223 33444 4454334434 44578999
Q ss_pred eEecCCCch-HHHHhccCCCCCHHHHHHHHH
Q 022946 197 AYNHNLDTS-REFYSKIITTRSYDERLETLK 226 (289)
Q Consensus 197 ~v~i~let~-~~~~~~i~~~~~~~~~~~~i~ 226 (289)
.|..++.+. +.. ..-+.+.++..++
T Consensus 225 ~vD~ai~g~g~~a-----gn~~~e~vv~~L~ 250 (592)
T PRK09282 225 IIDTAISPLAFGT-----SQPPTESMVAALK 250 (592)
T ss_pred EEEeeccccCCCc-----CCHhHHHHHHHHH
Confidence 999988765 321 1224555555554
|
|
| >cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family | Back alignment and domain information |
|---|
Probab=82.62 E-value=10 Score=31.14 Aligned_cols=74 Identities=18% Similarity=0.218 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEec
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 200 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i 200 (289)
+.+++....+.+.+.|.+.|-...|.. +.| ...+.+..+.+.++ ..+.+-...|.-+.+.+.+|.++|.+++..
T Consensus 129 ~~~~i~~a~ria~e~GaD~IKTsTG~~-~~~--at~~~v~~~~~~~~-~~v~ik~aGGikt~~~~l~~~~~g~~riG~ 202 (203)
T cd00959 129 TDEEIIKACEIAIEAGADFIKTSTGFG-PGG--ATVEDVKLMKEAVG-GRVGVKAAGGIRTLEDALAMIEAGATRIGT 202 (203)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCC-CCC--CCHHHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHhChhhccC
Confidence 568888888888899998876644332 112 23333333333333 445666677777889999999999887754
|
DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction. |
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=82.54 E-value=4.7 Score=35.61 Aligned_cols=86 Identities=15% Similarity=0.168 Sum_probs=56.4
Q ss_pred HHHHHHcCCCeEecCCCch-HHHHhccCCC---CCHHHHHHHHHHHHH-cCCceeecEEeecCCCHHHHHHHHHHHhcCC
Q 022946 187 AIELKKAGLTAYNHNLDTS-REFYSKIITT---RSYDERLETLKHVRE-AGINVCSGGIIGLGEAEEDRVGLLHTLATLP 261 (289)
Q Consensus 187 l~~L~~aG~~~v~i~let~-~~~~~~i~~~---~~~~~~~~~i~~~~~-~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~ 261 (289)
++.+.+.|++.|.+++-.. +.+.++-.+. .+++.+.+.++.+++ .+++++.-+=+|..++.++..+.+..+.+.
T Consensus 72 a~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~- 150 (309)
T PF01207_consen 72 AEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFARILEDA- 150 (309)
T ss_dssp HHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHHHHHHHT-
T ss_pred HHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecccccccchhHHHHHHHHhhhc-
Confidence 3444445888888888777 6666553332 367888888888887 578899999999887888899999999988
Q ss_pred CCCCeeeecccee
Q 022946 262 THPESVPINALLA 274 (289)
Q Consensus 262 ~~~~~v~i~~~~p 274 (289)
+.+.+.++.-++
T Consensus 151 -G~~~i~vH~Rt~ 162 (309)
T PF01207_consen 151 -GVSAITVHGRTR 162 (309)
T ss_dssp -T--EEEEECS-T
T ss_pred -ccceEEEecCch
Confidence 577887776644
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=82.36 E-value=36 Score=30.33 Aligned_cols=67 Identities=21% Similarity=0.259 Sum_probs=46.0
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcC--ceEEEeCCCCCHHHHHHHHHcCCCeEecCC
Q 022946 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG--MEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 128 ~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~--~~i~~~~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
.+.++.+.+.|++.|++... .|.+ +...+.++.+++.+ +.+.. ....+.+.+..+.++|+|.|.+++
T Consensus 96 ~~~~~~l~eagv~~I~vd~~----~G~~---~~~~~~i~~ik~~~p~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg~ 164 (325)
T cd00381 96 KERAEALVEAGVDVIVIDSA----HGHS---VYVIEMIKFIKKKYPNVDVIA-GNVVTAEAARDLIDAGADGVKVGI 164 (325)
T ss_pred HHHHHHHHhcCCCEEEEECC----CCCc---HHHHHHHHHHHHHCCCceEEE-CCCCCHHHHHHHHhcCCCEEEECC
Confidence 45556667789988877432 1222 56777888887554 45443 234788999999999999998754
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=82.24 E-value=14 Score=32.37 Aligned_cols=104 Identities=19% Similarity=0.240 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccC----C--------------CCCCchhHHHHHHHHHHHHh-cCceEEEeCCCCC
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWR----D--------------TIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLE 183 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~----~--------------~~ge~~~~~~l~e~i~~ik~-~~~~i~~~~g~l~ 183 (289)
+.+++.+.++.+.+.|++-+++.+... + ..| +......++.+..+++ .++.+..+.|..+
T Consensus 167 ~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg-~~~~~~~l~~v~~i~~~~~ipvi~~GGI~s 245 (300)
T TIGR01037 167 NVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSG-PAIKPIALRMVYDVYKMVDIPIIGVGGITS 245 (300)
T ss_pred ChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccc-hhhhHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 456777888888889999988753110 0 001 1122233566666764 5788888889999
Q ss_pred HHHHHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHH-HHHcCCc
Q 022946 184 KHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKH-VREAGIN 234 (289)
Q Consensus 184 ~e~l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~-~~~~Gi~ 234 (289)
.+.+.++..+|+|.|.++=-.. ..+.-+.++.+.++. +.+.|+.
T Consensus 246 ~~da~~~l~~GAd~V~igr~~l-------~~p~~~~~i~~~l~~~~~~~g~~ 290 (300)
T TIGR01037 246 FEDALEFLMAGASAVQVGTAVY-------YRGFAFKKIIEGLIAFLKAEGFT 290 (300)
T ss_pred HHHHHHHHHcCCCceeecHHHh-------cCchHHHHHHHHHHHHHHHcCCC
Confidence 9999888889999888764221 122345555555554 4446653
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=82.19 E-value=22 Score=33.27 Aligned_cols=78 Identities=22% Similarity=0.274 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCc--eEEEe--CCCCCHHHHHHHHHcCCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGM--EVCCT--LGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~--~i~~~--~g~l~~e~l~~L~~aG~~ 196 (289)
.+++.+++.++.+.+.|++.|+|.. +.|- ..-..+.++++.++ ..++ .++++ .|.-....+ .-.++|++
T Consensus 151 ~~~~~~~~~a~~l~~~Gad~I~i~D----t~G~-l~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~AN~l-aAieaGad 224 (448)
T PRK12331 151 HTIDYFVKLAKEMQEMGADSICIKD----MAGI-LTPYVAYELVKRIKEAVTVPLEVHTHATSGIAEMTYL-KAIEAGAD 224 (448)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcC----CCCC-CCHHHHHHHHHHHHHhcCCeEEEEecCCCCcHHHHHH-HHHHcCCC
Confidence 5789999999999999999999954 1221 12245666666666 3333 34443 454333333 34478999
Q ss_pred eEecCCCch
Q 022946 197 AYNHNLDTS 205 (289)
Q Consensus 197 ~v~i~let~ 205 (289)
.|..++...
T Consensus 225 ~vD~sv~gl 233 (448)
T PRK12331 225 IIDTAISPF 233 (448)
T ss_pred EEEeecccc
Confidence 998877653
|
|
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=82.09 E-value=12 Score=33.22 Aligned_cols=79 Identities=14% Similarity=0.121 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccC---------------CCCCCchhHHHHHHHHHHHHh-c--CceEEEeCCCCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWR---------------DTIGRKTNFNQILEYVKDIRD-M--GMEVCCTLGMLE 183 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~---------------~~~ge~~~~~~l~e~i~~ik~-~--~~~i~~~~g~l~ 183 (289)
.+.+++.+.++.+.+.|++-|++.+... ...| +......++.++.+++ . .+.+..+.|..+
T Consensus 213 ~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG-~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t 291 (327)
T cd04738 213 LSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSG-APLKERSTEVLRELYKLTGGKIPIIGVGGISS 291 (327)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCC-hhhhHHHHHHHHHHHHHhCCCCcEEEECCCCC
Confidence 4556788888888889999888754211 0112 2233345666777763 3 577888888889
Q ss_pred HHHHHHHHHcCCCeEecC
Q 022946 184 KHQAIELKKAGLTAYNHN 201 (289)
Q Consensus 184 ~e~l~~L~~aG~~~v~i~ 201 (289)
.+.+.++..+|.+.|.++
T Consensus 292 ~~da~e~l~aGAd~V~vg 309 (327)
T cd04738 292 GEDAYEKIRAGASLVQLY 309 (327)
T ss_pred HHHHHHHHHcCCCHHhcc
Confidence 998888888999988875
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=82.09 E-value=17 Score=31.48 Aligned_cols=79 Identities=14% Similarity=0.254 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCc---hhHHHHHHHHHHHHhc-CceEEEeCC-CCC----HHHHHHHHHc
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK---TNFNQILEYVKDIRDM-GMEVCCTLG-MLE----KHQAIELKKA 193 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~---~~~~~l~e~i~~ik~~-~~~i~~~~g-~l~----~e~l~~L~~a 193 (289)
+++++.+.++.+.+.|++.|.+..+..+..... ...+.+.++++.+++. ++.+.+-.+ ..+ .+.++.+.++
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~ 188 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERA 188 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHc
Confidence 568888888888888998887754322211111 1335677778887743 555443322 233 4567888899
Q ss_pred CCCeEecC
Q 022946 194 GLTAYNHN 201 (289)
Q Consensus 194 G~~~v~i~ 201 (289)
|+|.+.+.
T Consensus 189 Gad~i~~~ 196 (289)
T cd02810 189 GADGLTAI 196 (289)
T ss_pred CCCEEEEE
Confidence 99998863
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >PRK00915 2-isopropylmalate synthase; Validated | Back alignment and domain information |
|---|
Probab=81.90 E-value=18 Score=34.40 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=12.4
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCM 144 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i 144 (289)
+++.+.+.++.+.+.|++.|.+
T Consensus 147 d~~~l~~~~~~~~~~Ga~~i~l 168 (513)
T PRK00915 147 DLDFLCRVVEAAIDAGATTINI 168 (513)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE
Confidence 4455555555555556555555
|
|
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=81.81 E-value=9.3 Score=34.33 Aligned_cols=79 Identities=15% Similarity=0.179 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCC---------------CCCCchhHHHHHHHHHHHH-hc--CceEEEeCCCCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRD---------------TIGRKTNFNQILEYVKDIR-DM--GMEVCCTLGMLE 183 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~---------------~~ge~~~~~~l~e~i~~ik-~~--~~~i~~~~g~l~ 183 (289)
.+.+++.+.++.+.+.|++-+++.+.... ..| +..+...++.++.++ .. ++.+..+.|..+
T Consensus 222 ~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG-~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s 300 (344)
T PRK05286 222 LSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSG-RPLFERSTEVIRRLYKELGGRLPIIGVGGIDS 300 (344)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCccc-HHHHHHHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence 45567888888888899999888653210 011 223344566777776 33 577888889999
Q ss_pred HHHHHHHHHcCCCeEecC
Q 022946 184 KHQAIELKKAGLTAYNHN 201 (289)
Q Consensus 184 ~e~l~~L~~aG~~~v~i~ 201 (289)
.+.+.++..+|++.|.++
T Consensus 301 ~eda~e~l~aGAd~V~v~ 318 (344)
T PRK05286 301 AEDAYEKIRAGASLVQIY 318 (344)
T ss_pred HHHHHHHHHcCCCHHHHH
Confidence 999888888999988764
|
|
| >TIGR00620 sporelyase spore photoproduct lyase | Back alignment and domain information |
|---|
Probab=81.69 E-value=19 Score=29.58 Aligned_cols=78 Identities=21% Similarity=0.198 Sum_probs=53.0
Q ss_pred CCHHHHHHHHHcCCCeEecCCCchHHHHhccC-CCCCHHHHHHHHHHHHHcCCceeecE--EeecCCCHHHHHHHHHHHh
Q 022946 182 LEKHQAIELKKAGLTAYNHNLDTSREFYSKII-TTRSYDERLETLKHVREAGINVCSGG--IIGLGEAEEDRVGLLHTLA 258 (289)
Q Consensus 182 l~~e~l~~L~~aG~~~v~i~let~~~~~~~i~-~~~~~~~~~~~i~~~~~~Gi~v~~~~--i~Glget~ed~~~~l~~l~ 258 (289)
.+.+.+..+...|=..+..|+.+. ++-+..- +..++++++++++.+.++|.+|+..+ |+=+....++-.++++.+.
T Consensus 34 ~nv~~Ll~l~~~~~t~~rfSlnp~-~Ii~~~E~~T~sl~~Rl~Aa~k~a~aGy~Vg~~~~PIi~~egW~e~Y~~l~~~l~ 112 (199)
T TIGR00620 34 HHVDHLLDAKHNGKTRFRFSINAD-YVIKNFEPGTSPLDKRIEAAVKVAKAGYPLGFIIAPIYIHEGWKEGYRNLLEKLD 112 (199)
T ss_pred cchhhHhcCCCCCCEEEEEEeCHH-HHHHHhcCCCCCHHHHHHHHHHHHHcCCeEEEEeeceEeeCChHHHHHHHHHHHH
Confidence 345556666666767777787664 3434443 35689999999999999999877664 3323445567777777775
Q ss_pred -cC
Q 022946 259 -TL 260 (289)
Q Consensus 259 -~l 260 (289)
.+
T Consensus 113 ~~l 115 (199)
T TIGR00620 113 EAL 115 (199)
T ss_pred HhC
Confidence 44
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=81.54 E-value=37 Score=32.97 Aligned_cols=100 Identities=14% Similarity=0.187 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCce--EEE--eCCCCCHHHHHHHHHcCCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGME--VCC--TLGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~--i~~--~~g~l~~e~l~~L~~aG~~ 196 (289)
.+++.+++.++.+.+.|++.|+|... .| -..-..+.++++.++ ..++. +++ +.|.-....+ .-.++|++
T Consensus 151 ~t~e~~~~~ak~l~~~Gad~I~IkDt----aG-~l~P~~v~~lv~alk~~~~ipi~~H~Hnt~Gla~an~l-aAieaGad 224 (596)
T PRK14042 151 HTLDNFLELGKKLAEMGCDSIAIKDM----AG-LLTPTVTVELYAGLKQATGLPVHLHSHSTSGLASICHY-EAVLAGCN 224 (596)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCc----cc-CCCHHHHHHHHHHHHhhcCCEEEEEeCCCCCcHHHHHH-HHHHhCCC
Confidence 58899999999999999999999531 22 112245666666666 33443 333 3454333333 34578999
Q ss_pred eEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCce
Q 022946 197 AYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINV 235 (289)
Q Consensus 197 ~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v 235 (289)
.|..++.+. ... ..-+.+.++.+++ ..|+.+
T Consensus 225 ~iD~ai~glGg~t-----Gn~~tE~lv~~L~---~~g~~t 256 (596)
T PRK14042 225 HIDTAISSFSGGA-----SHPPTEALVAALT---DTPYDT 256 (596)
T ss_pred EEEeccccccCCC-----CcHhHHHHHHHHH---hcCCCC
Confidence 999888775 321 1224556555554 455543
|
|
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=81.54 E-value=31 Score=29.08 Aligned_cols=126 Identities=17% Similarity=0.172 Sum_probs=74.5
Q ss_pred HHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHH----HHHHHHcCCCeEecCCCch
Q 022946 130 AAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQ----AIELKKAGLTAYNHNLDTS 205 (289)
Q Consensus 130 ~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~----l~~L~~aG~~~v~i~let~ 205 (289)
..+.+...|.+++... + ..+++.+.+..+++.+..+.++..-.+.+. ++.+.+ +.+.|.+++...
T Consensus 40 aa~~~~~~~~~ef~~~---------~-~~~~~~~~~~~~~~~~~p~~vqi~g~~~~~~~~aa~~~~~-~~~~ielN~gCP 108 (233)
T cd02911 40 AARKLVKRGRKEFLPD---------D-PLEFIEGEIKALKDSNVLVGVNVRSSSLEPLLNAAALVAK-NAAILEINAHCR 108 (233)
T ss_pred HHHHHHhcCCcccccc---------c-hHHHHHHHHHHhhccCCeEEEEecCCCHHHHHHHHHHHhh-cCCEEEEECCCC
Confidence 3445556676666321 1 445666666666655555555543333333 334434 458888888877
Q ss_pred -HHHHhccCCC---CCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeecc
Q 022946 206 -REFYSKIITT---RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINA 271 (289)
Q Consensus 206 -~~~~~~i~~~---~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~ 271 (289)
+++.+.-.+. .+++...+.++.+++.++++..-+-.|. + ++..+..+.+.+. +.+.+.+..
T Consensus 109 ~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~~~pVsvKir~g~--~-~~~~~la~~l~~a--G~d~ihv~~ 173 (233)
T cd02911 109 QPEMVEAGAGEALLKDPERLSEFIKALKETGVPVSVKIRAGV--D-VDDEELARLIEKA--GADIIHVDA 173 (233)
T ss_pred cHHHhcCCcchHHcCCHHHHHHHHHHHHhcCCCEEEEEcCCc--C-cCHHHHHHHHHHh--CCCEEEECc
Confidence 6665543321 3578888888888887777665555543 3 5666777777777 466665543
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=81.42 E-value=17 Score=30.96 Aligned_cols=93 Identities=17% Similarity=0.134 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEec
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 200 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i 200 (289)
.++.+ .++.+.+.|+..+.+......+.|. + +.++.++ ...+++......+++.++.+-+.+|.|.|.+
T Consensus 61 ~d~~~---~A~~y~~~GA~aISVlTe~~~F~Gs---~----~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~~GADavLL 130 (247)
T PRK13957 61 YHPVQ---IAKTYETLGASAISVLTDQSYFGGS---L----EDLKSVSSELKIPVLRKDFILDEIQIREARAFGASAILL 130 (247)
T ss_pred CCHHH---HHHHHHHCCCcEEEEEcCCCcCCCC---H----HHHHHHHHhcCCCEEeccccCCHHHHHHHHHcCCCEEEe
Confidence 35544 4445668899888765543334342 2 3333344 2467888888899999999999999999976
Q ss_pred CCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCce
Q 022946 201 NLDTSREFYSKIITTRSYDERLETLKHVREAGINV 235 (289)
Q Consensus 201 ~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v 235 (289)
-... .+.++..+.++.+++.|+.+
T Consensus 131 I~~~-----------L~~~~l~~l~~~a~~lGle~ 154 (247)
T PRK13957 131 IVRI-----------LTPSQIKSFLKHASSLGMDV 154 (247)
T ss_pred EHhh-----------CCHHHHHHHHHHHHHcCCce
Confidence 5422 23456677777788888764
|
|
| >PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
Probab=81.36 E-value=22 Score=31.88 Aligned_cols=78 Identities=14% Similarity=0.175 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-c--Cc--eEEEe--CCCCCHHHHHHHHHcC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-M--GM--EVCCT--LGMLEKHQAIELKKAG 194 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~--~~--~i~~~--~g~l~~e~l~~L~~aG 194 (289)
.+++++.+.++.+.+.|++.|.+... .| -..-+.+.++++.+++ . .+ .++.+ .|.-....+..+ ++|
T Consensus 141 ~~~e~l~~~a~~~~~~Ga~~i~i~DT----~G-~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi-~aG 214 (337)
T PRK08195 141 APPEKLAEQAKLMESYGAQCVYVVDS----AG-ALLPEDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAV-EAG 214 (337)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEeCCC----CC-CCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHH-HhC
Confidence 48899999999999999999988542 22 1223456666666552 2 23 33433 454334444444 689
Q ss_pred CCeEecCCCch
Q 022946 195 LTAYNHNLDTS 205 (289)
Q Consensus 195 ~~~v~i~let~ 205 (289)
+++|..++.+.
T Consensus 215 a~~iD~Sl~Gl 225 (337)
T PRK08195 215 ATRIDGSLAGL 225 (337)
T ss_pred CCEEEecChhh
Confidence 99998877653
|
|
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=81.09 E-value=51 Score=31.27 Aligned_cols=100 Identities=14% Similarity=0.261 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-c--Cce--EEEe--CCCCCHHHHHHHHHcC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-M--GME--VCCT--LGMLEKHQAIELKKAG 194 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~--~~~--i~~~--~g~l~~e~l~~L~~aG 194 (289)
.+++.+++.++.+.+.|++.|+|.. +.|- ..-..+.++++.+++ . ++. ++++ .|.- ....-.-.++|
T Consensus 152 ~t~e~~~~~a~~l~~~Gad~I~IkD----taGl-l~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA-~An~laAieAG 225 (499)
T PRK12330 152 HTVEGFVEQAKRLLDMGADSICIKD----MAAL-LKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVT-LVSLMKAIEAG 225 (499)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCC----CccC-CCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcH-HHHHHHHHHcC
Confidence 4889999999999999999999953 1221 122456666666663 3 333 4444 4433 33344456789
Q ss_pred CCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCce
Q 022946 195 LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINV 235 (289)
Q Consensus 195 ~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v 235 (289)
++.|..++.+. ... ..-..++++.+++ ..|+.+
T Consensus 226 ad~vDtai~Glg~~a-----Gn~atE~vv~~L~---~~g~~t 259 (499)
T PRK12330 226 VDVVDTAISSMSLGP-----GHNPTESLVEMLE---GTGYTT 259 (499)
T ss_pred CCEEEeecccccccc-----cchhHHHHHHHHH---hcCCCC
Confidence 99999888775 211 1124566666554 456553
|
|
| >cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR) | Back alignment and domain information |
|---|
Probab=80.50 E-value=37 Score=29.27 Aligned_cols=49 Identities=14% Similarity=0.047 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC-----chhHHHHHHHHHHHHh
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR-----KTNFNQILEYVKDIRD 170 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge-----~~~~~~l~e~i~~ik~ 170 (289)
++..++...+..+.+.|++.+.+.+|+....+. +..+.+-.++++.++.
T Consensus 70 ~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~ 123 (274)
T cd00537 70 RNRIELQSILLGAHALGIRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRK 123 (274)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Confidence 355888888888999999999887666544332 2345566667766663
|
5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease. |
| >COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.44 E-value=15 Score=31.98 Aligned_cols=42 Identities=14% Similarity=0.163 Sum_probs=24.4
Q ss_pred HHHHHHcCCCeEecCCCch-------HHHHhccCCCCCHHHHHHHHHHH
Q 022946 187 AIELKKAGLTAYNHNLDTS-------REFYSKIITTRSYDERLETLKHV 228 (289)
Q Consensus 187 l~~L~~aG~~~v~i~let~-------~~~~~~i~~~~~~~~~~~~i~~~ 228 (289)
+++|.++|+++|..++-++ ...++.+....+...+++.+..-
T Consensus 220 ~~~L~~~Gv~~V~~~~~~~raa~~a~~~~~~~i~~~gt~~~~~d~m~~r 268 (289)
T COG2513 220 VAELAELGVKRVSYGLTAFRAALKAAEQAAREIRREGTQANVLDKMQTR 268 (289)
T ss_pred HHHHHhcCceEEEECcHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 4677788888888776442 23444444444555555555443
|
|
| >PRK12581 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=80.40 E-value=46 Score=31.26 Aligned_cols=100 Identities=19% Similarity=0.234 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-cCce--EEE--eCCCCCHHHHHHHHHcCCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGME--VCC--TLGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~~~~--i~~--~~g~l~~e~l~~L~~aG~~ 196 (289)
.+.+-+++.++.+.+.|++.|+|... .| -..-..+.++++.+++ .+++ +++ +.|.-....+. -.++|++
T Consensus 160 ~t~~y~~~~a~~l~~~Gad~I~IkDt----aG-~l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~GlA~An~la-AieAGad 233 (468)
T PRK12581 160 HTLNYYLSLVKELVEMGADSICIKDM----AG-ILTPKAAKELVSGIKAMTNLPLIVHTHATSGISQMTYLA-AVEAGAD 233 (468)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEECCC----CC-CcCHHHHHHHHHHHHhccCCeEEEEeCCCCccHHHHHHH-HHHcCCC
Confidence 36777888888888999999988541 22 1122455555555553 2333 333 34543344343 4478999
Q ss_pred eEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCce
Q 022946 197 AYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINV 235 (289)
Q Consensus 197 ~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v 235 (289)
.|..++.+. +.. ..-+.+.++.+++ ..|+.+
T Consensus 234 ~vD~ai~g~g~ga-----gN~~tE~lv~~L~---~~g~~t 265 (468)
T PRK12581 234 RIDTALSPFSEGT-----SQPATESMYLALK---EAGYDI 265 (468)
T ss_pred EEEeeccccCCCc-----CChhHHHHHHHHH---hcCCCC
Confidence 999888765 321 1224555555444 456654
|
|
| >cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=80.38 E-value=8.1 Score=33.11 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=13.5
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEe
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMG 145 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~ 145 (289)
+++.+.+.++.+.+.|++.|.+.
T Consensus 137 ~~~~~~~~~~~~~~~G~~~i~l~ 159 (259)
T cd07939 137 DPDFLIEFAEVAQEAGADRLRFA 159 (259)
T ss_pred CHHHHHHHHHHHHHCCCCEEEeC
Confidence 45666666666656666666553
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox |
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=80.29 E-value=30 Score=28.05 Aligned_cols=70 Identities=19% Similarity=0.086 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCC-CCHHHHHHHHHcCCCeEec
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM-LEKHQAIELKKAGLTAYNH 200 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~-l~~e~l~~L~~aG~~~v~i 200 (289)
.+++++.+.++.+.+.|++.+.+.... + .-.+.++.+++..-++....|. ++.+.++...++|.+.+..
T Consensus 13 ~~~~~~~~~~~~l~~~G~~~vev~~~~------~----~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~ 82 (190)
T cd00452 13 DDAEDALALAEALIEGGIRAIEITLRT------P----GALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVS 82 (190)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCC------h----hHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEc
Confidence 478999999999999999988775411 1 1333556555332233333444 6699999999999998865
Q ss_pred C
Q 022946 201 N 201 (289)
Q Consensus 201 ~ 201 (289)
+
T Consensus 83 p 83 (190)
T cd00452 83 P 83 (190)
T ss_pred C
Confidence 4
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >PRK00507 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=80.25 E-value=20 Score=29.98 Aligned_cols=76 Identities=20% Similarity=0.227 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 201 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~ 201 (289)
++.+++.+..+.+.+.|++.|-...| ..+.| ...+.+..+.+.+ ...+.+-.+.|.-+.+.+..|.++|.+++..|
T Consensus 133 L~~e~i~~a~~~~~~agadfIKTsTG-~~~~g--at~~~v~~m~~~~-~~~~~IKasGGIrt~~~a~~~i~aGA~riGtS 208 (221)
T PRK00507 133 LTDEEKVKACEIAKEAGADFVKTSTG-FSTGG--ATVEDVKLMRETV-GPRVGVKASGGIRTLEDALAMIEAGATRLGTS 208 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCC-CCCCC--CCHHHHHHHHHHh-CCCceEEeeCCcCCHHHHHHHHHcCcceEccC
Confidence 67788888888888888885543332 22223 2233333332222 22355666778888999999999999887664
|
|
| >PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional | Back alignment and domain information |
|---|
Probab=80.20 E-value=7.4 Score=34.00 Aligned_cols=121 Identities=15% Similarity=0.191 Sum_probs=67.8
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-c---CceEEEe--CCCCCHHHHHHHHHcCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-M---GMEVCCT--LGMLEKHQAIELKKAGL 195 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~---~~~i~~~--~g~l~~e~l~~L~~aG~ 195 (289)
.+++.+.+.++.+.+.|++.|.|..... ...| .++.++++.+++ . .+.++.+ .|.-....+..+ ++|+
T Consensus 152 ~~~~~~~~~~~~~~~~G~d~i~l~DT~G--~~~P---~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA~-~aG~ 225 (287)
T PRK05692 152 VPPEAVADVAERLFALGCYEISLGDTIG--VGTP---GQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYASL-EEGI 225 (287)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEeccccC--ccCH---HHHHHHHHHHHHhCCCCeEEEEecCCCCcHHHHHHHHH-HhCC
Confidence 4789999999999999999998854211 1223 445555555552 2 2334444 454444444444 6799
Q ss_pred CeEecCCCch-HHHHhcc-CCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhc
Q 022946 196 TAYNHNLDTS-REFYSKI-ITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLAT 259 (289)
Q Consensus 196 ~~v~i~let~-~~~~~~i-~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~ 259 (289)
+.+..++.+. .--+..= ...-..++++-.++ ..|+.+ |-+.+.+.+..+++.+
T Consensus 226 ~~id~s~~GlGecpfa~g~aGN~~~E~lv~~L~---~~g~~t--------~idl~~l~~~~~~~~~ 280 (287)
T PRK05692 226 TVFDASVGGLGGCPYAPGASGNVATEDVLYMLH---GLGIET--------GIDLDKLVRAGQFIQS 280 (287)
T ss_pred CEEEEEccccCCCCCCCCccccccHHHHHHHHH---hcCCCC--------CcCHHHHHHHHHHHHH
Confidence 9999888765 3111110 11235666666664 346543 2234555555555544
|
|
| >COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.06 E-value=32 Score=29.53 Aligned_cols=105 Identities=12% Similarity=0.177 Sum_probs=68.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhH----HHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCe
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNF----NQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTA 197 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~----~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~ 197 (289)
+.|+|...++..+..|++-+ . ||-+.|.-.|..| ++-++++++.+ +.|+.+.+- .++.+.++...++ +|.
T Consensus 57 s~E~i~~~A~~vk~~Ga~~l-R-GgafKPRTSPYsFQGlge~gL~~l~~a~~~~Gl~vvtE--vm~~~~~e~~~~y-~Di 131 (286)
T COG2876 57 SEEQVRETAESVKAAGAKAL-R-GGAFKPRTSPYSFQGLGEEGLKLLKRAADETGLPVVTE--VMDVRDVEAAAEY-ADI 131 (286)
T ss_pred CHHHHHHHHHHHHHcchhhc-c-CCcCCCCCCcccccccCHHHHHHHHHHHHHcCCeeEEE--ecCHHHHHHHHhh-hhH
Confidence 56888988888888887644 2 2222232223222 45566666666 668776543 3677788888887 787
Q ss_pred EecCCCch--HHHHhccCC-----------CCCHHHHHHHHHHHHHcC
Q 022946 198 YNHNLDTS--REFYSKIIT-----------TRSYDERLETLKHVREAG 232 (289)
Q Consensus 198 v~i~let~--~~~~~~i~~-----------~~~~~~~~~~i~~~~~~G 232 (289)
+.+|.--. =++++.+.+ ..+.++|+.+.+.+...|
T Consensus 132 lqvGARNMQNF~LLke~G~~~kPvLLKRg~~aTieEwL~AAEYI~s~G 179 (286)
T COG2876 132 LQVGARNMQNFALLKEVGRQNKPVLLKRGLSATIEEWLNAAEYILSHG 179 (286)
T ss_pred HHhcccchhhhHHHHHhcccCCCeEEecCccccHHHHHHHHHHHHhCC
Confidence 77765443 234444332 247899999999998887
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 289 | ||||
| 1r30_A | 369 | The Crystal Structure Of Biotin Synthase, An S- Ade | 4e-71 | ||
| 3cix_A | 348 | X-ray Structure Of The [fefe]-hydrogenase Maturase | 3e-05 | ||
| 3ciw_A | 348 | X-Ray Structure Of The [fefe]-Hydrogenase Maturase | 4e-05 | ||
| 3iiz_A | 348 | X-Ray Structure Of The Fefe-Hydrogenase Maturase Hy | 4e-05 |
| >pdb|1R30|A Chain A, The Crystal Structure Of Biotin Synthase, An S- Adenosylmethionine-dependent Radical Enzyme Length = 369 | Back alignment and structure |
|
| >pdb|3CIX|A Chain A, X-ray Structure Of The [fefe]-hydrogenase Maturase Hyde From Thermotoga Maritima In Complex With Thiocyanate Length = 348 | Back alignment and structure |
|
| >pdb|3CIW|A Chain A, X-Ray Structure Of The [fefe]-Hydrogenase Maturase Hyde From Thermotoga Maritima Length = 348 | Back alignment and structure |
|
| >pdb|3IIZ|A Chain A, X-Ray Structure Of The Fefe-Hydrogenase Maturase Hyde From T. Maritima In Complex With S-Adenosyl-L-Methionine Length = 348 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1 Length = 369 | Back alignment and structure |
|---|
Score = 408 bits (1050), Expect = e-144
Identities = 134/236 (56%), Positives = 168/236 (71%), Gaps = 2/236 (0%)
Query: 49 PRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQ 108
R W+ + +++ P+LDLLF QVHR + R+VQ TLLSIKTG C EDC YCPQ
Sbjct: 26 HRPRWTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQ 85
Query: 109 SSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDI 168
SSRY TG++ ++LM + V+++A+KAK AGSTRFCMGAAW++ R + + + V+ +
Sbjct: 86 SSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHER--DMPYLEQMVQGV 143
Query: 169 RDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHV 228
+ MG+E C TLG L + QA L AGL YNHNLDTS EFY IITTR+Y ERL+TL+ V
Sbjct: 144 KAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKV 203
Query: 229 REAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284
R+AGI VCSGGI+GLGE +DR GLL LA LPT PESVPIN L+ VKGTPL D
Sbjct: 204 RDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADND 259
|
| >3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri} Length = 350 | Back alignment and structure |
|---|
Score = 260 bits (667), Expect = 4e-86
Identities = 44/240 (18%), Positives = 100/240 (41%), Gaps = 13/240 (5%)
Query: 50 RHDWSKDDIK---SIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYC 106
+ + +D++ S+ L+ L+ A+ R + V + C CS+C
Sbjct: 20 GYQLTDNDLRTLLSLESKEGLERLYSAARKVRDHYFGNRVFLNCFIYFS-TYCKNQCSFC 78
Query: 107 PQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVK 166
+ R + +T + + + + K AG + + N+ +E V+
Sbjct: 79 YYNCRNEINRYR---LTMEEIKETCKTLKGAGFHMVDLTMGEDPYYYE--DPNRFVELVQ 133
Query: 167 DIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLET 224
++ ++G+ + + G+++ ++ ++ G +T E Y K+ +S+D R+
Sbjct: 134 IVKEELGLPIMISPGLMDNATLLKAREKGANFLALYQETYDTELYRKLRVGQSFDGRVNA 193
Query: 225 LKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284
+ ++ G V G + G+G E + L ++T P+ V + L +GTPL+ +
Sbjct: 194 RRFAKQQGYCVEDGILTGVGNDIESTILSLRGMSTN--DPDMVRVMTFLPQEGTPLEGFR 251
|
| >3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* Length = 348 | Back alignment and structure |
|---|
Score = 243 bits (621), Expect = 2e-79
Identities = 57/245 (23%), Positives = 110/245 (44%), Gaps = 14/245 (5%)
Query: 45 IREGPRHDWSKDDIK---SIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSE 101
+ + R +++++ +K SI D + LF A R + EV ++ + C +
Sbjct: 7 LEKLERREFTREVLKEALSINDRGFNEALFKLADEIRRKYVGDEVHIRAIIEF-SNVCRK 65
Query: 102 DCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQI 161
+C YC R + +K + MT + +++ A+ A + G+ + + + I
Sbjct: 66 NCLYCGLR-RDNKNLK-RYRMTPEEIVERARLAVQFGAKTIVLQSGEDP----YXMPDVI 119
Query: 162 LEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDE 220
+ VK+I+ MG+ V +LG + + K+AG Y +T+ + K+ S++
Sbjct: 120 SDIVKEIKKMGVAVTLSLGEWPREYYEKWKEAGADRYLLRHETANPVLHRKLRPDTSFEN 179
Query: 221 RLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP 279
RL L ++E G +G ++GL G+ +D V L L + V I + TP
Sbjct: 180 RLNCLLTLKELGYETGAGSMVGLPGQTIDDLVDDLLFLKEHD--FDMVGIGPFIPHPDTP 237
Query: 280 LQDQK 284
L ++K
Sbjct: 238 LANEK 242
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 3e-07
Identities = 41/317 (12%), Positives = 85/317 (26%), Gaps = 96/317 (30%)
Query: 4 FRSLLRSQRSL-------SLRPSKKFLALHSSCSCYSASAAAIEAERTIREGPRHDWSKD 56
F +LL Q + LR + KFL + I+ E+ + +
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLM------------SPIKTEQRQPSMMTRMYIEQ 115
Query: 57 DIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKT---------GGCSEDCSYCP 107
+ D+ V V R + +++Q LL ++ G
Sbjct: 116 RDRLYNDNQVFAKYN----VSRL-QPYLKLRQA-LLELRPAKNVLIDGVLGS-------- 161
Query: 108 QSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKD 167
G+ + D + + + W + + +LE ++
Sbjct: 162 ----------GKTWVALDVCLSYKVQ------CKMDFKIFWL-NLKNCNSPETVLEMLQK 204
Query: 168 IRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKH 227
+ + + + + + +++ ++ Y+ L L +
Sbjct: 205 L--------LYQIDPNWTSRSD----HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 228 VREAGI----NV-C-------SGGII-GLGEAEEDRVGLLHTLATLPTHPES-------- 266
V+ A N+ C + L A + L H TL T E
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL-TPDEVKSLLLKYL 311
Query: 267 -VPINAL--LAVKGTPL 280
L + P
Sbjct: 312 DCRPQDLPREVLTTNPR 328
|
| >2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii} Length = 342 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 2e-04
Identities = 25/189 (13%), Positives = 59/189 (31%), Gaps = 22/189 (11%)
Query: 70 LFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTK-DAVM 128
L G ++ +C ++ C+ +C +C + G + + ++
Sbjct: 52 LTEGRFCYKQKFYGIHSHRCLQMTPVLAWCTHNCIFCWRPMENFLGTELPQPWDDPAFIV 111
Query: 129 QAAQKAKEAGSTRFCM---------------GAAWRDTIGRKTNFNQILEYVKDIRDMGM 173
+ + KA+ + A G + + + V++ G
Sbjct: 112 EESIKAQRKLLIGYKGNPKVDKKKFEEAWNPTHAAISLSGEPMLYPYMGDLVEEFHKRGF 171
Query: 174 EVC-CTLGML-EKHQAIELKKAGLTAYNHNLDT-SREFYSKIITTRSYD--ER-LETLKH 227
T G + E+ + + + T ++ E Y+ + D ER L L+
Sbjct: 172 TTFIVTNGTIPERLEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMIPDGWERILRFLEL 231
Query: 228 VREAGINVC 236
+R+
Sbjct: 232 MRDLPTRTV 240
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 289 | |||
| 3t7v_A | 350 | Methylornithine synthase PYLB; TIM-barrel fold, mu | 100.0 | |
| 1r30_A | 369 | Biotin synthase; SAM radical protein, TIM barrel, | 100.0 | |
| 3iix_A | 348 | Biotin synthetase, putative; adoMet radical, SAM r | 100.0 | |
| 2qgq_A | 304 | Protein TM_1862; alpha-beta protein, structural ge | 99.94 | |
| 1tv8_A | 340 | MOAA, molybdenum cofactor biosynthesis protein A; | 99.88 | |
| 1olt_A | 457 | Oxygen-independent coproporphyrinogen III oxidase; | 99.88 | |
| 3c8f_A | 245 | Pyruvate formate-lyase 1-activating enzyme; adoMet | 99.8 | |
| 2yx0_A | 342 | Radical SAM enzyme; predicted tRNA modification en | 99.79 | |
| 2z2u_A | 311 | UPF0026 protein MJ0257; metal binding protein; 2.4 | 99.73 | |
| 3rfa_A | 404 | Ribosomal RNA large subunit methyltransferase N; r | 99.72 | |
| 2a5h_A | 416 | L-lysine 2,3-aminomutase; radical SAM, four-iron-f | 99.61 | |
| 3can_A | 182 | Pyruvate-formate lyase-activating enzyme; structur | 99.24 | |
| 4fhd_A | 368 | Spore photoproduct lyase; partial TIM-barrel, DNA | 98.72 | |
| 2cw6_A | 298 | Hydroxymethylglutaryl-COA lyase, mitochondrial; HM | 97.74 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 97.58 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 97.32 | |
| 3ivs_A | 423 | Homocitrate synthase, mitochondrial; TIM barrel, m | 97.16 | |
| 1ydo_A | 307 | HMG-COA lyase; TIM-barrel protein, structural geno | 97.16 | |
| 3ble_A | 337 | Citramalate synthase from leptospira interrogans; | 97.14 | |
| 3ewb_X | 293 | 2-isopropylmalate synthase; LEUA, structural genom | 97.08 | |
| 3rmj_A | 370 | 2-isopropylmalate synthase; LEUA, truncation, neis | 96.59 | |
| 1eye_A | 280 | DHPS 1, dihydropteroate synthase I; alpha-beta bar | 96.58 | |
| 3eeg_A | 325 | 2-isopropylmalate synthase; 11106D, beta barrel, P | 96.39 | |
| 3tr9_A | 314 | Dihydropteroate synthase; biosynthesis of cofactor | 96.34 | |
| 2ztj_A | 382 | Homocitrate synthase; (beta/alpha)8 TIM barrel, su | 96.3 | |
| 2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protei | 96.17 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 96.15 | |
| 1aj0_A | 282 | DHPS, dihydropteroate synthase; antibiotic, resist | 95.98 | |
| 2y5s_A | 294 | DHPS, dihydropteroate synthase; transferase, folat | 95.77 | |
| 4hb7_A | 270 | Dihydropteroate synthase; transferase; 1.95A {Stap | 95.73 | |
| 2dqw_A | 294 | Dihydropteroate synthase; dimer, structural genomi | 95.56 | |
| 1tx2_A | 297 | DHPS, dihydropteroate synthase; folate biosynthesi | 95.5 | |
| 2nx9_A | 464 | Oxaloacetate decarboxylase 2, subunit alpha; carbo | 95.18 | |
| 1rqb_A | 539 | Transcarboxylase 5S subunit; TIM-barrel, carbamyla | 94.9 | |
| 2vef_A | 314 | Dihydropteroate synthase; antibiotic resistance, t | 94.67 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 94.3 | |
| 2vp8_A | 318 | Dihydropteroate synthase 2; RV1207 transferase, fo | 94.25 | |
| 1m5w_A | 243 | Pyridoxal phosphate biosynthetic protein PDXJ; TIM | 94.06 | |
| 2p0o_A | 372 | Hypothetical protein DUF871; structural genomics, | 94.03 | |
| 3gk0_A | 278 | PNP synthase, pyridoxine 5'-phosphate synthase; de | 93.84 | |
| 2bmb_A | 545 | Folic acid synthesis protein FOL1; folate biosynth | 93.84 | |
| 2yci_X | 271 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 93.44 | |
| 3mcm_A | 442 | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine | 92.41 | |
| 3bg3_A | 718 | Pyruvate carboxylase, mitochondrial; TIM barrel, A | 92.37 | |
| 1x7f_A | 385 | Outer surface protein; structural genomics, unknow | 91.88 | |
| 2wqp_A | 349 | Polysialic acid capsule biosynthesis protein SIAC; | 91.7 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 90.96 | |
| 3o6c_A | 260 | PNP synthase, pyridoxine 5'-phosphate synthase; st | 90.95 | |
| 1vli_A | 385 | Spore coat polysaccharide biosynthesis protein SP; | 90.43 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 90.36 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 90.15 | |
| 1twd_A | 256 | Copper homeostasis protein CUTC; TIM-like protein, | 89.91 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 89.6 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 89.41 | |
| 2eja_A | 338 | URO-D, UPD, uroporphyrinogen decarboxylase; dimer, | 88.86 | |
| 4djd_D | 323 | C/Fe-SP, corrinoid/iron-sulfur protein small subun | 88.83 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 88.69 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 88.6 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 88.56 | |
| 3ble_A | 337 | Citramalate synthase from leptospira interrogans; | 88.37 | |
| 3apt_A | 310 | Methylenetetrahydrofolate reductase; TIM barrel, o | 87.92 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 87.89 | |
| 2y7e_A | 282 | 3-keto-5-aminohexanoate cleavage enzyme; lyase, al | 87.84 | |
| 3g8r_A | 350 | Probable spore coat polysaccharide biosynthesis P; | 87.57 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 87.56 | |
| 1qwg_A | 251 | PSL synthase;, (2R)-phospho-3-sulfolactate synthas | 87.56 | |
| 3e49_A | 311 | Uncharacterized protein DUF849 with A TIM barrel; | 87.53 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 87.41 | |
| 3chv_A | 284 | Prokaryotic domain of unknown function (DUF849) W | 87.3 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 87.23 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 87.14 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 87.13 | |
| 2h9a_B | 310 | CO dehydrogenase/acetyl-COA synthase, iron- sulfur | 87.1 | |
| 3no5_A | 275 | Uncharacterized protein; PFAM DUF849 domain contai | 87.1 | |
| 3c6c_A | 316 | 3-keto-5-aminohexanoate cleavage enzyme; DUF849 fa | 86.84 | |
| 3cyv_A | 354 | URO-D, UPD, uroporphyrinogen decarboxylase; alpha/ | 86.83 | |
| 1geq_A | 248 | Tryptophan synthase alpha-subunit; hyperthermophIl | 86.54 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 86.46 | |
| 3k13_A | 300 | 5-methyltetrahydrofolate-homocysteine methyltrans; | 86.11 | |
| 1f6y_A | 262 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 85.95 | |
| 3dxi_A | 320 | Putative aldolase; TIM barrel, 11107N, PSI2, NYSGX | 85.93 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 85.88 | |
| 1r3s_A | 367 | URO-D, uroporphyrinogen decarboxylase, UPD; uropor | 85.84 | |
| 3lot_A | 314 | Uncharacterized protein; protein of unknown functi | 85.82 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 85.81 | |
| 3noy_A | 366 | 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; | 85.51 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 85.46 | |
| 3e02_A | 311 | Uncharacterized protein DUF849; structural genomic | 85.29 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 85.18 | |
| 3gnh_A | 403 | L-lysine, L-arginine carboxypeptidase CC2672; N-me | 85.16 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 85.05 | |
| 3eeg_A | 325 | 2-isopropylmalate synthase; 11106D, beta barrel, P | 85.0 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 84.72 | |
| 1vp8_A | 201 | Hypothetical protein AF0103; putative pyruvate kin | 84.49 | |
| 3ewb_X | 293 | 2-isopropylmalate synthase; LEUA, structural genom | 84.31 | |
| 2qf7_A | 1165 | Pyruvate carboxylase protein; multi-domain, multi- | 84.07 | |
| 4exq_A | 368 | UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid | 83.98 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 83.92 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 83.6 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 83.6 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 83.1 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 82.85 | |
| 3lmz_A | 257 | Putative sugar isomerase; structural genomics, joi | 82.51 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 82.41 | |
| 3fst_A | 304 | 5,10-methylenetetrahydrofolate reductase; TIM barr | 82.12 | |
| 2p10_A | 286 | MLL9387 protein; putative phosphonopyruvate hydrol | 81.66 | |
| 1hg3_A | 225 | Triosephosphate isomerase; thermostability, tetram | 81.63 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 81.53 | |
| 1zco_A | 262 | 2-dehydro-3-deoxyphosphoheptonate aldolase; arabin | 81.5 | |
| 1j93_A | 353 | UROD, uroporphyrinogen decarboxylase; beta barrel, | 81.33 | |
| 2nx9_A | 464 | Oxaloacetate decarboxylase 2, subunit alpha; carbo | 81.29 | |
| 2inf_A | 359 | URO-D, UPD, uroporphyrinogen decarboxylase; (alpha | 81.15 | |
| 3nvt_A | 385 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; | 80.94 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 80.86 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 80.14 |
| >3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=278.06 Aligned_cols=238 Identities=19% Similarity=0.330 Sum_probs=206.0
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHhhCCC---hHHHHHHHHHHHHhhhCCCeeEEeEeeccccCCCCcCCCCCCCCCCCC
Q 022946 37 AAIEAERTIREGPRHDWSKDDIKSIYDSP---VLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYD 113 (289)
Q Consensus 37 ~~~~~~~~~~~~~~~~ls~ee~~~l~~~~---~~~l~~~a~~~~r~~~~g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~ 113 (289)
+..+.+++.+ +.+||.+|+..|++.+ ..+.+..+++..|++++|+.++++++|++ |++|+++|.||+++...
T Consensus 10 ~~~i~~k~~~---~~~l~~~e~~~l~~~~~~~~~~~L~~~A~~~r~~~~g~~v~~~~~i~~-t~~C~~~C~fC~~~~~~- 84 (350)
T 3t7v_A 10 FDSLGDKVIE---GYQLTDNDLRTLLSLESKEGLERLYSAARKVRDHYFGNRVFLNCFIYF-STYCKNQCSFCYYNCRN- 84 (350)
T ss_dssp --CHHHHHHT---TCCCCHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEE-ECCCCCCCTTCTTCTTS-
T ss_pred HHHHHHHHHc---CCCCCHHHHHHHhcCCChhHHHHHHHHHHHHHHHHCCCEEEEEEeeec-CCCcCCCCCcCCCcCcC-
Confidence 3457788888 9999999999999853 34556666666677777999999999998 99999999999997543
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchh---HHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHH
Q 022946 114 TGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTN---FNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIE 189 (289)
Q Consensus 114 ~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~---~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~ 189 (289)
...++. +++++|++.++.+.+.|++.|+|+||.. |.. .+++.++++.++ ..++.+.++.|.++++.+++
T Consensus 85 -~~~~~~-ls~eei~~~~~~~~~~G~~~i~l~gGe~-----p~~~~~~~~~~~l~~~ik~~~~i~i~~s~g~~~~e~l~~ 157 (350)
T 3t7v_A 85 -EINRYR-LTMEEIKETCKTLKGAGFHMVDLTMGED-----PYYYEDPNRFVELVQIVKEELGLPIMISPGLMDNATLLK 157 (350)
T ss_dssp -CCCCCB-CCHHHHHHHHHHHTTSCCSEEEEEECCC-----HHHHHSTHHHHHHHHHHHHHHCSCEEEECSSCCHHHHHH
T ss_pred -CCCcee-CCHHHHHHHHHHHHHCCCCEEEEeeCCC-----CccccCHHHHHHHHHHHHhhcCceEEEeCCCCCHHHHHH
Confidence 333444 8999999999999999999999976431 322 478889998888 45788888999999999999
Q ss_pred HHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeee
Q 022946 190 LKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVP 268 (289)
Q Consensus 190 L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~ 268 (289)
|+++|++++.+++|++ +++++.+++++++++++++++.+++.|+.+++++|+|+|||.+|+.+++++++++ +++.++
T Consensus 158 L~~aG~~~i~i~lEt~~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~e~~~~~l~~l~~l--~~~~v~ 235 (350)
T 3t7v_A 158 AREKGANFLALYQETYDTELYRKLRVGQSFDGRVNARRFAKQQGYCVEDGILTGVGNDIESTILSLRGMSTN--DPDMVR 235 (350)
T ss_dssp HHHTTEEEEECCCBCSCHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEEEESSSCCHHHHHHHHHHHHHT--CCSEEE
T ss_pred HHHcCCCEEEEeeecCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEccceEeecCCCHHHHHHHHHHHHhC--CCCEEE
Confidence 9999999999999999 9999999999999999999999999999999999999999999999999999999 589999
Q ss_pred eccceecCCCCCCCCCCCCC
Q 022946 269 INALLAVKGTPLQDQKLKYG 288 (289)
Q Consensus 269 i~~~~p~pgTpl~~~~~~~~ 288 (289)
+++|+|.|||||++.++++.
T Consensus 236 ~~~f~p~~gT~l~~~~~~~~ 255 (350)
T 3t7v_A 236 VMTFLPQEGTPLEGFRDKSN 255 (350)
T ss_dssp EEECCCCTTSTTTTCCCCCC
T ss_pred ecceeeCCCCcCccCCCCCh
Confidence 99999999999999876653
|
| >1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-36 Score=269.73 Aligned_cols=237 Identities=56% Similarity=0.967 Sum_probs=206.9
Q ss_pred CCCCCCHHHHHHhhCCChHHHHHHHHHHHHhhhCCCeeEEeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHH
Q 022946 49 PRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVM 128 (289)
Q Consensus 49 ~~~~ls~ee~~~l~~~~~~~l~~~a~~~~r~~~~g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~ 128 (289)
...+||.+|+..|++.++.+++..|..++++++.|+.+.++.+|++.|++|+++|.||.++..+..+..+++.+++++|+
T Consensus 26 ~~~~ls~~e~~~l~~~~~~~L~~~A~~~~~~~~~~~~v~~~~~i~i~t~~C~~~C~yC~~~~~~~~~~~~~~~~s~eei~ 105 (369)
T 1r30_A 26 HRPRWTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVL 105 (369)
T ss_dssp -CCCCCSTTTHHHHHSCHHHHHHHHHHHHHHHSCTTCCEEEEEEEEECSCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHH
T ss_pred ccCCCCHHHHHHHHhccHHHHHHHHHHHHHHhcCCCEEEEEEEEEEECCCCcccCccCCCCCcCCCCCcccccCCHHHHH
Confidence 46789999999999988999998888887777657889988888855999999999999886443333345668999999
Q ss_pred HHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCchHHH
Q 022946 129 QAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREF 208 (289)
Q Consensus 129 ~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~~~~ 208 (289)
++++.+.+.|++.|+|+|++.. +++...+++.++++.+++.++++.+++|.++++.++.|+++|++++++++|+.+++
T Consensus 106 ~~~~~~~~~g~~~i~~~gg~~~--p~~~~~~~l~~ll~~ik~~g~~i~~t~G~l~~e~l~~L~~aGvd~v~i~les~~e~ 183 (369)
T 1r30_A 106 ESARKAKAAGSTRFCMGAAWKN--PHERDMPYLEQMVQGVKAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEF 183 (369)
T ss_dssp HHHHHHHHTTCSEEEEEECCSS--CCTTTHHHHHHHHHHHHHTTSEEEEECSSCCHHHHHHHHHHCCCEEECCCBSCHHH
T ss_pred HHHHHHHHcCCcEEEEEeCCCC--CCcCCHHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHCCCCEEeecCcCCHHH
Confidence 9999998899999999876422 23456789999999999888888889999999999999999999999999999899
Q ss_pred HhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCCCCC
Q 022946 209 YSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKLKY 287 (289)
Q Consensus 209 ~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~~~~ 287 (289)
|+.+++++++++++++++.+++.|+.+++++|+|++||.+|+.++++++++++.+++.++++.|+|.|||||++.++++
T Consensus 184 ~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~I~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~l~p~~gT~l~~~~~~~ 262 (369)
T 1r30_A 184 YGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVD 262 (369)
T ss_dssp HHHHCCSSCHHHHHHHHHHHHHHHCEEECCEEECSSCCHHHHHHHHHHHHSSSSCCSEEEEEECCCCTTSTTSSCCCCC
T ss_pred HHHhCCCCCHHHHHHHHHHHHHcCCeeeeeeEeeCCCCHHHHHHHHHHHHhhcCCCCEEEeeeeeecCCCcCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999533789999999999999999876554
|
| >3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-35 Score=259.57 Aligned_cols=236 Identities=23% Similarity=0.337 Sum_probs=201.0
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHhhCCCh---HHHHHHHHHHHHhhhCCCeeEEeEeeccccCCCCcCCCCCCCCCCCCC
Q 022946 38 AIEAERTIREGPRHDWSKDDIKSIYDSPV---LDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDT 114 (289)
Q Consensus 38 ~~~~~~~~~~~~~~~ls~ee~~~l~~~~~---~~l~~~a~~~~r~~~~g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~~ 114 (289)
..+.+++.+ +.||.+|+..|++.+. .+.+..+++..|++++|+.++++.+|++ |++|+++|.||+++... .
T Consensus 4 ~~i~~k~~~----~~l~~~e~~~ll~~~~~~~~~~l~~~A~~ir~~~~g~~v~~~~~i~~-t~~C~~~C~fC~~~~~~-~ 77 (348)
T 3iix_A 4 REILEKLER----REFTREVLKEALSINDRGFNEALFKLADEIRRKYVGDEVHIRAIIEF-SNVCRKNCLYCGLRRDN-K 77 (348)
T ss_dssp HHHHHHHHT----TCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCSEEEEEEEEEE-ECCCSCCCTTCTTCTTC-C
T ss_pred HHHHHHHHh----CCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCEEEEEEEeEe-cCCcCCcCccCCCCCCC-C
Confidence 344555443 7899999999997542 3345555555566667999999999998 99999999999987532 2
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCch-hHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHc
Q 022946 115 GVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT-NFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKA 193 (289)
Q Consensus 115 ~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~-~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~a 193 (289)
...++. +++++|++.++.+.+.|++.|+|+||. + |. ..+++.++++.+++.++.+.+++|.++++.++.|+++
T Consensus 78 ~~~~~~-ls~eei~~~i~~~~~~g~~~i~~~gGe-~----p~~~~~~~~~li~~i~~~~~~i~~s~g~l~~e~l~~L~~a 151 (348)
T 3iix_A 78 NLKRYR-MTPEEIVERARLAVQFGAKTIVLQSGE-D----PYXMPDVISDIVKEIKKMGVAVTLSLGEWPREYYEKWKEA 151 (348)
T ss_dssp SSCCCB-CCHHHHHHHHHHHHHTTCSEEEEEESC-C----GGGTTHHHHHHHHHHHTTSCEEEEECCCCCHHHHHHHHHH
T ss_pred CcCcee-CCHHHHHHHHHHHHHCCCCEEEEEeCC-C----CCccHHHHHHHHHHHHhcCceEEEecCCCCHHHHHHHHHh
Confidence 233444 899999999999999999999998743 1 32 3388999999998778888889999999999999999
Q ss_pred CCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec-CCCHHHHHHHHHHHhcCCCCCCeeeecc
Q 022946 194 GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINA 271 (289)
Q Consensus 194 G~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~ 271 (289)
|++.+.+++|+. +++++.+++++++++++++++.+++.|+.+++++|+|+ +||.+++.+++.+++++ +++.+.+++
T Consensus 152 g~~~v~i~let~~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~G~p~et~e~~~~~~~~l~~l--~~~~i~i~~ 229 (348)
T 3iix_A 152 GADRYLLRHETANPVLHRKLRPDTSFENRLNCLLTLKELGYETGAGSMVGLPGQTIDDLVDDLLFLKEH--DFDMVGIGP 229 (348)
T ss_dssp TCCEEECCCBCSCHHHHHHHSTTSCHHHHHHHHHHHHHTTCEEEECBEESCTTCCHHHHHHHHHHHHHH--TCSEECCEE
T ss_pred CCCEEeeeeeeCCHHHHHHhCCCcCHHHHHHHHHHHHHhCCeeccceEEeCCCCCHHHHHHHHHHHHhc--CCCEEeeee
Confidence 999999999999 99999999989999999999999999999999999999 99999999999999999 589999999
Q ss_pred ceecCCCCCCCCCCCC
Q 022946 272 LLAVKGTPLQDQKLKY 287 (289)
Q Consensus 272 ~~p~pgTpl~~~~~~~ 287 (289)
|+|.||||+++.++.+
T Consensus 230 ~~p~~gt~l~~~~~~~ 245 (348)
T 3iix_A 230 FIPHPDTPLANEKKGD 245 (348)
T ss_dssp CCCCTTSTTTTSCCCC
T ss_pred eecCCCCCcccCCCCC
Confidence 9999999999977654
|
| >2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-26 Score=201.92 Aligned_cols=188 Identities=15% Similarity=0.240 Sum_probs=134.9
Q ss_pred EeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCch-hHHHHHHHHHHH
Q 022946 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT-NFNQILEYVKDI 168 (289)
Q Consensus 90 ~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~-~~~~l~e~i~~i 168 (289)
.++++ ++|||++|.||.++...+ +.+.+++++|+++++.+.+.|+++|.|.|.....+|.+. ....+.++++.+
T Consensus 6 ~~v~i-s~GC~~~C~fC~~~~~~g----~~r~r~~e~i~~ei~~l~~~G~~ei~l~g~~~~~yG~~~~~~~~l~~Ll~~l 80 (304)
T 2qgq_A 6 AYVKI-SDGCDRGCTFCSIPSFKG----SLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRL 80 (304)
T ss_dssp EEEES-BCCC-------------C----CCCBCCHHHHHHHHHHHHHTTCCEEEEECTTGGGTTHHHHSSCCHHHHHHHH
T ss_pred EEEEE-CCCCCCcCccCCccccCC----CceeeCHHHHHHHHHHHHHCCCcEEEEEeEcccccCCCCCcHHHHHHHHHHH
Confidence 34566 999999999999875322 234479999999999999999999999875433333221 123466666666
Q ss_pred Hhc-Cce-EE---EeCCCCCHHHHHHHHHcC--CCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHH--cCCceeec
Q 022946 169 RDM-GME-VC---CTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVRE--AGINVCSG 238 (289)
Q Consensus 169 k~~-~~~-i~---~~~g~l~~e~l~~L~~aG--~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~--~Gi~v~~~ 238 (289)
++. ++. +. +++..++++.++.|+++| ++++.+++|+. +++++.++++.++++++++++.+++ .|+.+.++
T Consensus 81 ~~~~gi~~ir~~~~~p~~l~~e~l~~l~~~g~~~~~l~i~lqs~s~~vl~~m~r~~t~e~~~~~i~~l~~~~~gi~i~~~ 160 (304)
T 2qgq_A 81 NSLNGEFWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRERFPDAVLRTS 160 (304)
T ss_dssp HTSSSSCEEEECCCCGGGCCHHHHHHHHHCTTBCCEEECCCBCSCHHHHHHTTCCSCHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred HhcCCCcEEEEeeeecccCCHHHHHHHHhCCCCccEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCEEEEE
Confidence 644 443 22 234568999999999999 99999999999 9999999999999999999999999 78999999
Q ss_pred EEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCC
Q 022946 239 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284 (289)
Q Consensus 239 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~ 284 (289)
+|+|+ |||.+|+.++++++.++ +++.+.++.|.|.||||+++.+
T Consensus 161 ~IvG~PgEt~ed~~~t~~~l~~l--~~~~v~~~~~~p~pgT~~~~~~ 205 (304)
T 2qgq_A 161 IIVGFPGETEEDFEELKQFVEEI--QFDKLGAFVYSDEEGTVAFNLK 205 (304)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHH--CCSEEEEEECCC----------
T ss_pred EEEeCCCCCHHHHHHHHHHHHHc--CCCEEEEEEeeCCCCChhHhCc
Confidence 99999 99999999999999999 6899999999999999999865
|
| >1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-21 Score=171.79 Aligned_cols=189 Identities=21% Similarity=0.302 Sum_probs=151.3
Q ss_pred CCeeEEeEeeccccCCCCcCCCCCCCCCCCC---CCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHH
Q 022946 83 FREVQQCTLLSIKTGGCSEDCSYCPQSSRYD---TGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFN 159 (289)
Q Consensus 83 g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~---~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~ 159 (289)
|..+.. ..|++ |++||++|.||.....+. ........++.+++.+.++.+.+.|+..|.|+| |||+...
T Consensus 10 gr~~~~-l~i~~-T~~CNl~C~yC~~~~~~~~~~~~~~~~~~ls~e~i~~~i~~~~~~g~~~i~~tG------GEPll~~ 81 (340)
T 1tv8_A 10 GRPIRD-LRLSV-TDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITG------GEPLMRR 81 (340)
T ss_dssp SCBCCE-EEEEC-CSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHHTTCCEEEEES------SCGGGST
T ss_pred CCccCe-EEEEe-CCCcCCcCCCCCcCcccCCCcccCCccCCCCHHHHHHHHHHHHHCCCCEEEEeC------CCccchh
Confidence 544432 23666 999999999998764111 111234558999999999999999999999976 5676666
Q ss_pred HHHHHHHHHHhcCc--eE-EEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCC-CHHHHHHHHHHHHHcCCc
Q 022946 160 QILEYVKDIRDMGM--EV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTR-SYDERLETLKHVREAGIN 234 (289)
Q Consensus 160 ~l~e~i~~ik~~~~--~i-~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~-~~~~~~~~i~~~~~~Gi~ 234 (289)
++.++++.+++.+. .+ .+|||.+..+.++.|+++|++.|.+|+|+. ++.++.+++.. ++++++++|+.+++.|+.
T Consensus 82 ~l~~li~~~~~~~~~~~i~i~TNG~ll~~~~~~L~~~g~~~v~iSld~~~~~~~~~i~~~~~~~~~v~~~i~~l~~~g~~ 161 (340)
T 1tv8_A 82 DLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLN 161 (340)
T ss_dssp THHHHHHHHTTCTTCCEEEEEECSTTHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHHTTCE
T ss_pred hHHHHHHHHHhCCCCCeEEEEeCccchHHHHHHHHHCCCCEEEEecCCCCHHHHHHhhCCCCCHHHHHHHHHHHHHCCCC
Confidence 78888888886543 43 467888777899999999999999999999 99999998877 999999999999999998
Q ss_pred eeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 235 VCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 235 v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
+...+++.-+++.+++.++++++.++ +++ +.+..|+|.++++.+.
T Consensus 162 v~i~~vv~~g~n~~ei~~~~~~~~~~--g~~-~~~i~~~p~~~~~~~~ 206 (340)
T 1tv8_A 162 VKVNVVIQKGINDDQIIPMLEYFKDK--HIE-IRFIEFMDVGNDNGWD 206 (340)
T ss_dssp EEEEEEECTTTTGGGHHHHHHHHHHT--TCC-EEEEECCCBCSSSSBC
T ss_pred EEEEEEEeCCCCHHHHHHHHHHHHhc--CCe-EEEEEeeEcCCCccch
Confidence 88887774478899999999999999 454 7788899999887543
|
| >1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=3.9e-22 Score=183.68 Aligned_cols=179 Identities=17% Similarity=0.169 Sum_probs=141.2
Q ss_pred CCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc----CCcEEEEecccCCCCCCchhHHHHHHHHHHHHh--
Q 022946 97 GGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA----GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-- 170 (289)
Q Consensus 97 ~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~----g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-- 170 (289)
++|+.+|.||.++...... ........+.+.++++.+.+. ++..|.|+||. ++.. ..+.+.++++.+++
T Consensus 60 pfC~~~C~yC~~~~~~~~~-~~~~~~~~~~l~~Ei~~~~~~~~~~~i~~i~fgGGt-pt~l---~~~~l~~ll~~i~~~~ 134 (457)
T 1olt_A 60 PFCHKLCYFCGCNKIVTRQ-QHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGT-PTYL---NKAQISRLMKLLRENF 134 (457)
T ss_dssp CEESSCCTTCCSSCEECSC-THHHHHHHHHHHHHHHHHGGGGTTCCEEEEEEEESC-GGGS---CHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCceeccCC-cchHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-cccC---CHHHHHHHHHHHHHhC
Confidence 4799999999987532111 111112467788888766543 35667777632 2211 23556666666553
Q ss_pred -----cCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCc-eeecEEeec
Q 022946 171 -----MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGL 243 (289)
Q Consensus 171 -----~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~~i~Gl 243 (289)
..+.+.++++.++++.++.|+++|+++|++|+||. +++++.+++++++++++++++.++++|+. +++++|+|+
T Consensus 135 ~~~~~~eitie~~p~~l~~e~l~~L~~~G~~rislGvQS~~~~~l~~i~R~~~~~~~~~ai~~~r~~G~~~v~~dlI~Gl 214 (457)
T 1olt_A 135 QFNADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIGFTSTNIDLIYGL 214 (457)
T ss_dssp CEEEEEEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTTCCSCEEEEEESC
T ss_pred CCCCCcEEEEEEccCcCCHHHHHHHHHcCCCEEEEeeccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence 13445666778999999999999999999999999 99999999999999999999999999997 999999999
Q ss_pred -CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 244 -GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 244 -get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
|||.+++.++++++.++ +++.+.++.|.|.|||++..
T Consensus 215 Pget~e~~~~tl~~~~~l--~~~~i~~y~l~~~p~t~~~~ 252 (457)
T 1olt_A 215 PKQTPESFAFTLKRVAEL--NPDRLSVFNYAHLPTIFAAQ 252 (457)
T ss_dssp TTCCHHHHHHHHHHHHHH--CCSEEEEEECCCCTTTSGGG
T ss_pred CCCCHHHHHHHHHHHHhc--CcCEEEeecCcCCcCchhHh
Confidence 99999999999999999 69999999999999998754
|
| >3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-18 Score=146.40 Aligned_cols=171 Identities=16% Similarity=0.235 Sum_probs=133.6
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc---CCcEEEEecccCCCCCCchhHHH-HHHHHHHHHhc
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA---GSTRFCMGAAWRDTIGRKTNFNQ-ILEYVKDIRDM 171 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~---g~~~i~i~~~~~~~~ge~~~~~~-l~e~i~~ik~~ 171 (289)
|++||++|.||..+..+.. .....++.+++++.++...+. ++..|.|.| |||....+ +.++++.+++.
T Consensus 26 t~~Cn~~C~~C~~~~~~~~--~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~G------GEP~l~~~~l~~l~~~~~~~ 97 (245)
T 3c8f_A 26 FQGCLMRCLYCHNRDTWDT--HGGKEVTVEDLMKEVVTYRHFMNASGGGVTASG------GEAILQAEFVRDWFRACKKE 97 (245)
T ss_dssp ESCCSCCCTTCSCGGGCCT--TCSEEECHHHHHHHHGGGHHHHTSTTCEEEEEE------SCGGGGHHHHHHHHHHHHTT
T ss_pred eCCCCCCCCCCCCchhccc--ccCccCCHHHHHHHHHHhhhhhcCCCCeEEEEC------CCcCCCHHHHHHHHHHHHHc
Confidence 8899999999987642211 123347899999999876653 467888877 45654444 68899888877
Q ss_pred CceE-EEeCCCC--CHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEe--ecCC
Q 022946 172 GMEV-CCTLGML--EKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGII--GLGE 245 (289)
Q Consensus 172 ~~~i-~~~~g~l--~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~--Glge 245 (289)
++.+ ..|||.+ +.+.+++|.++ ++.|.+++|+. ++.++.+++. ++++++++++.+++.|+.+...+++ |..+
T Consensus 98 ~~~i~i~Tng~~~~~~~~~~~l~~~-~~~v~isld~~~~~~~~~~~~~-~~~~~~~~i~~l~~~g~~v~i~~~~~~g~~~ 175 (245)
T 3c8f_A 98 GIHTCLDTNGFVRRYDPVIDELLEV-TDLVMLDLKQMNDEIHQNLVGV-SNHRTLEFAKYLANKNVKVWIRYVVVPGWSD 175 (245)
T ss_dssp TCCEEEEECCCCCCCCHHHHHHHHT-CSEEEEECCCSSHHHHHHHHSS-CSHHHHHHHHHHHHHTCCEEEEEEECTTTTC
T ss_pred CCcEEEEeCCCcCcCHHHHHHHHHh-CCEEEEeCCCCCHHHhhhccCC-CHHHHHHHHHHHHhcCCEEEEEEeecCCCCC
Confidence 7765 3467877 88889999998 99999999999 9999999764 4699999999999999987665444 4457
Q ss_pred CHHHHHHHHHHHhcCCCCC-CeeeeccceecCCC
Q 022946 246 AEEDRVGLLHTLATLPTHP-ESVPINALLAVKGT 278 (289)
Q Consensus 246 t~ed~~~~l~~l~~l~~~~-~~v~i~~~~p~pgT 278 (289)
+.+++.++++++.++ ++ ..+.+.++.|.+++
T Consensus 176 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 207 (245)
T 3c8f_A 176 DDDSAHRLGEFTRDM--GNVEKIELLPYHELGKH 207 (245)
T ss_dssp CHHHHHHHHHHHHHH--CCEEEEEEEECCCCSHH
T ss_pred CHHHHHHHHHHHHhc--CCCceeEEEeccccChh
Confidence 889999999999999 44 77888888886654
|
| >2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-18 Score=154.16 Aligned_cols=174 Identities=16% Similarity=0.199 Sum_probs=132.5
Q ss_pred CCCCcCCCCCCCCCCCCCC-CCCcCCCCHHHHHHHHHHHHHc--------------------CCcEEEEecccCCCCCCc
Q 022946 97 GGCSEDCSYCPQSSRYDTG-VKGQKLMTKDAVMQAAQKAKEA--------------------GSTRFCMGAAWRDTIGRK 155 (289)
Q Consensus 97 ~~C~~~C~fC~~~~~~~~~-~~~~~~~~~eei~~~~~~~~~~--------------------g~~~i~i~~~~~~~~ge~ 155 (289)
++||++|.||..+.....+ ....+.+++++|++.+...... .++.|+|.++ |||
T Consensus 79 ~gCnl~C~fC~~~~~~~~~~~~~~~~~~~eei~~~i~~~~~~~~~~~~g~~~v~~~~~~e~~~~~~v~~sgg-----GEP 153 (342)
T 2yx0_A 79 AWCTHNCIFCWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKFEEAWNPTHAAISLS-----GEP 153 (342)
T ss_dssp SCCSBCCTTCCCSSSSCSCSSCCSSCCCHHHHHHHHHHHHHHHHTTCC--CCSCHHHHHHHTSCCEEEECSS-----SCG
T ss_pred hhhhCcCcccCCCCCCCcccccccCcCCHHHHHHHHHHHHHHHhhccCCCcccchhhhhhccCCCEEEEcCC-----Ccc
Confidence 7999999999876322111 1133457899998877654321 2466888642 566
Q ss_pred hhHHHHHHHHHHHHhcCceE-EEeCCCCCHHHHHHHHHcC--CCeEecCCCch-HHHHhccCC---CCCHHHHHHHHHHH
Q 022946 156 TNFNQILEYVKDIRDMGMEV-CCTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIIT---TRSYDERLETLKHV 228 (289)
Q Consensus 156 ~~~~~l~e~i~~ik~~~~~i-~~~~g~l~~e~l~~L~~aG--~~~v~i~let~-~~~~~~i~~---~~~~~~~~~~i~~~ 228 (289)
....++.++++.+++.++.+ ..|+|.+ ++.++.|+++| ++.+.+++++. ++.++.+++ +.++++++++++.+
T Consensus 154 ll~~~l~~ll~~~~~~g~~i~l~TNG~~-~e~l~~L~~~g~~~~~l~isld~~~~e~~~~i~~~~~~~~~~~~~~~i~~l 232 (342)
T 2yx0_A 154 MLYPYMGDLVEEFHKRGFTTFIVTNGTI-PERLEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMIPDGWERILRFLELM 232 (342)
T ss_dssp GGSTTHHHHHHHHHHTTCEEEEEECSCC-HHHHHHHHHTTCCCSEEEEEECCSSHHHHHHHHCBSSSCHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHCCCcEEEEcCCCc-HHHHHHHHhcCCCCCEEEEEccCCCHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 55567888888888778775 4568887 88899999988 99999999999 999999987 45799999999999
Q ss_pred HHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCC
Q 022946 229 REAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT 278 (289)
Q Consensus 229 ~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgT 278 (289)
++.|+.+...+++.-|++.+++.++++++.++ +++.+.+.+|.|.+++
T Consensus 233 ~~~g~~v~i~~~l~~g~n~~~~~~l~~~l~~~--~~~~i~l~~~~~~~~~ 280 (342)
T 2yx0_A 233 RDLPTRTVVRLTLVKGENMHSPEKYAKLILKA--RPMFVEAKAYMFVGYS 280 (342)
T ss_dssp TTCSSEEEEEEEECTTTTCCCHHHHHHHHHHH--CCSEEEEEECC-----
T ss_pred HhCCCCEEEEEEEECCccHHHHHHHHHHHHHc--CCCEEEEEeeeecCCC
Confidence 99999988888875578887899999999988 5888988888876654
|
| >2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.7e-18 Score=148.42 Aligned_cols=175 Identities=16% Similarity=0.241 Sum_probs=113.9
Q ss_pred ecccc-CCCCcCCCCCCCCCCCCCC-----CCCcCCCCHHHHHHHHHHHHH---------------------cCCcEEEE
Q 022946 92 LSIKT-GGCSEDCSYCPQSSRYDTG-----VKGQKLMTKDAVMQAAQKAKE---------------------AGSTRFCM 144 (289)
Q Consensus 92 i~~~t-~~C~~~C~fC~~~~~~~~~-----~~~~~~~~~eei~~~~~~~~~---------------------~g~~~i~i 144 (289)
+++ | .+||++|.||..+.....+ ......++++++++.+..... ..++.|.|
T Consensus 55 i~~-t~~~Cn~~C~fC~~~~~~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~~~~~~~g~~~v~~~~r~~~~~~~~~i~~ 133 (311)
T 2z2u_A 55 CTP-SVIWCQQNCIFCWRVLPRDIGIDISQIKEPKWEEPEVVYEKILAMHKRIIMGYAGVLDRVGEKKFKEALEPKHVAI 133 (311)
T ss_dssp EES-CSSCCSCC----------------CCSCCCCCCCHHHHHHHHHHHHHHHHHGGGGGHHHHCHHHHHHHTSCCEEEE
T ss_pred ecc-ChhHHhCcCcccCCCCCCcccccccccCccccCCHHHHHHHHHHHHHHHhhccCCCcCcchhhhhhhccCCCEEEE
Confidence 455 7 7999999999865321111 112355899999887654421 12456777
Q ss_pred ecccCCCCCCchhHHHHHHHHHHHHhcCceE-EEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCC--CCHHH
Q 022946 145 GAAWRDTIGRKTNFNQILEYVKDIRDMGMEV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITT--RSYDE 220 (289)
Q Consensus 145 ~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i-~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~--~~~~~ 220 (289)
.+ +|||...+++.++++.+++.++.+ ..|||.+ .+.++.| |++.+.+++++. ++.++.+++. .++++
T Consensus 134 s~-----gGEPll~~~l~~li~~~~~~g~~~~l~TNG~~-~~~l~~L---~~~~v~isld~~~~~~~~~i~~~~~~~~~~ 204 (311)
T 2z2u_A 134 SL-----SGEPTLYPYLDELIKIFHKNGFTTFVVSNGIL-TDVIEKI---EPTQLYISLDAYDLDSYRRICGGKKEYWES 204 (311)
T ss_dssp CS-----SSCGGGSTTHHHHHHHHHHTTCEEEEEECSCC-HHHHHHC---CCSEEEEECCCSSTTTC----CCCHHHHHH
T ss_pred eC-----CcCccchhhHHHHHHHHHHCCCcEEEECCCCC-HHHHHhC---CCCEEEEEeecCCHHHHHHHhCCccchHHH
Confidence 64 256766677888888888778775 4568877 5555544 889999999999 9999999887 57999
Q ss_pred HHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCC
Q 022946 221 RLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 280 (289)
Q Consensus 221 ~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl 280 (289)
++++++.+++.| .+...+++.-|.+. ++.++++++.++ +++.+.+.+|+|.++++.
T Consensus 205 v~~~i~~l~~~g-~v~i~~~~~~g~n~-~~~~~~~~~~~~--~~~~i~l~~~~p~g~~~~ 260 (311)
T 2z2u_A 205 ILNTLDILKEKK-RTCIRTTLIRGYND-DILKFVELYERA--DVHFIELKSYMHVGYSQK 260 (311)
T ss_dssp HHHHHHHHTTSS-SEEEEEEECTTTTC-CGGGTHHHHHHH--TCSEEEEEECC-------
T ss_pred HHHHHHHHHhcC-CEEEEEEEECCcch-hHHHHHHHHHHc--CCCEEEEEeeEEcccccc
Confidence 999999999999 76666555345555 788888888888 689999999999988873
|
| >3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-16 Score=142.25 Aligned_cols=174 Identities=17% Similarity=0.279 Sum_probs=133.5
Q ss_pred eccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH----------cCCcEEEEecccCCCCCCch-hHHH
Q 022946 92 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE----------AGSTRFCMGAAWRDTIGRKT-NFNQ 160 (289)
Q Consensus 92 i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~----------~g~~~i~i~~~~~~~~ge~~-~~~~ 160 (289)
|+. +.|||++|.||..... + ..+.++++||++.+..... .+++.|+|.| +|||+ .++.
T Consensus 119 VSs-q~GCnl~C~fC~tg~~---g--~~r~Lt~eEIv~qv~~~~~~~~~~g~~gg~~i~~Ivf~G-----gGEPLln~d~ 187 (404)
T 3rfa_A 119 VSS-QVGCALECKFCSTAQQ---G--FNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG-----MGEPLLNLNN 187 (404)
T ss_dssp CCC-EEECSSCCTTCGGGTT---C--EEEECCHHHHHHHHHHHHHHHCCHHHHSSCSCSEEEECS-----SSCGGGCHHH
T ss_pred EEe-CCCCCCcCCCCCCCCC---C--CCCcCCHHHHHHHHHHHHHHhhhcccccCCCccEEEEeC-----CCCcccCHHH
Confidence 444 6799999999987632 1 2345899999998876543 2478899986 36775 4588
Q ss_pred HHHHHHHHHh-cCc-----eE-EEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCC---CCCHHHHHHHHHH-H
Q 022946 161 ILEYVKDIRD-MGM-----EV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT---TRSYDERLETLKH-V 228 (289)
Q Consensus 161 l~e~i~~ik~-~~~-----~i-~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~---~~~~~~~~~~i~~-~ 228 (289)
+.++++.+++ .|+ .+ ..|+|.+ +.+++|.+.+...+.+++++. ++.++++.+ +.++++++++++. +
T Consensus 188 v~~~i~~lk~~~Gl~~s~r~itlsTnG~~--p~i~~L~~~~d~~LaiSLka~d~e~~~~i~pv~~~~~le~vl~ai~~~~ 265 (404)
T 3rfa_A 188 VVPAMEIMLDDFGFGLSKRRVTLSTSGVV--PALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYL 265 (404)
T ss_dssp HHHHHHHHHSTTTTCCCGGGEEEEESCCH--HHHHHHHHHCCCEEEEECCCSSHHHHHHHSGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCcCcCCCceEEECCCcH--HHHHHHHHhhcceEEecccCCCHHHHHHhcCCccCCCHHHHHHHHHHHH
Confidence 9999999985 466 44 4578976 457888888656778999999 999999985 5689999999955 5
Q ss_pred HHcCC---ceee--cEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCC
Q 022946 229 REAGI---NVCS--GGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ 281 (289)
Q Consensus 229 ~~~Gi---~v~~--~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~ 281 (289)
.+.|. .+.. .+|-|+.++++++.++++++..++ ..|.+.+|.|++++++.
T Consensus 266 ~~~g~~~~~V~ie~vLI~GvNDs~e~~~~La~ll~~l~---~~VnLIpynP~~~~~~~ 320 (404)
T 3rfa_A 266 EKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTP---CKINLIPWNPFPGAPYG 320 (404)
T ss_dssp HHCTTTTTCEEEEEEEBTTTTCSHHHHHHHHHHTTTSC---EEEEEEECCCCTTCCCC
T ss_pred HHhCCCcccEEEEEEEecCCCCCHHHHHHHHHHHHcCC---CcEEEEeccCCCCCCCC
Confidence 66776 5544 455588999999999999999882 47888999999887654
|
| >2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-14 Score=132.24 Aligned_cols=170 Identities=16% Similarity=0.202 Sum_probs=122.5
Q ss_pred eeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-cCCcEEEEecccCCCCCCchhHH--HHHHHHHH
Q 022946 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTNFN--QILEYVKD 167 (289)
Q Consensus 91 ~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~g~~~i~i~~~~~~~~ge~~~~~--~l~e~i~~ 167 (289)
.+++ |++||++|.||...... + .....++.+++.+.++.+.+ .|+..|.|+| |||+... .+.++++.
T Consensus 118 ~l~v-T~~Cnl~C~yC~~~~~~--~-~~~~~ls~eei~~~i~~i~~~~gi~~V~ltG------GEPll~~d~~L~~il~~ 187 (416)
T 2a5h_A 118 LLLI-TDMCSMYCRHCTRRRFA--G-QSDDSMPMERIDKAIDYIRNTPQVRDVLLSG------GDALLVSDETLEYIIAK 187 (416)
T ss_dssp EEEE-ESCCSSCCTTCTTTTTT--T-SSSSBCCHHHHHHHHHHHHTCTTCCEEEEEE------SCTTSSCHHHHHHHHHH
T ss_pred EEec-CCCccccCcCCCCcccC--C-CccCCCCHHHHHHHHHHHHhcCCCcEEEEEC------CCCCCCCHHHHHHHHHH
Confidence 4566 99999999999775321 1 12234899999999998887 6899998887 3443332 37777777
Q ss_pred HHhc-Cce-E-EEeCC------CCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCceee
Q 022946 168 IRDM-GME-V-CCTLG------MLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCS 237 (289)
Q Consensus 168 ik~~-~~~-i-~~~~g------~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~ 237 (289)
+++. ++. + ..|+| .++++.++.|+++ +.+.+++++. + +.+. ++++++++.++++|+.+..
T Consensus 188 l~~~~~v~~i~i~Tng~~~~p~~it~e~l~~L~~~--~~v~Isl~~~~~---~ei~-----~~v~~ai~~L~~aGi~v~i 257 (416)
T 2a5h_A 188 LREIPHVEIVRIGSRTPVVLPQRITPELVNMLKKY--HPVWLNTHFNHP---NEIT-----EESTRACQLLADAGVPLGN 257 (416)
T ss_dssp HHTSTTCCEEEEECSHHHHCGGGCCHHHHHHHGGG--CSEEEEECCCSG---GGCC-----HHHHHHHHHHHHTTCCEEE
T ss_pred HHhcCCccEEEEEecccccccccCCHHHHHHHHhc--CcEEEEEecCCH---HHHh-----HHHHHHHHHHHHcCCEEEE
Confidence 7654 332 2 24555 3679999999998 7788888886 5 2332 8999999999999998665
Q ss_pred cEEe--ecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 238 GGII--GLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 238 ~~i~--Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
..++ |++++.+++.++++++.++ ++....++.+-+.+||+.+.
T Consensus 258 ~~vll~GvNd~~e~l~~l~~~l~~l--gv~~~~i~~~~~~~g~~~~~ 302 (416)
T 2a5h_A 258 QSVLLRGVNDCVHVMKELVNKLVKI--RVRPYYIYQCDLSLGLEHFR 302 (416)
T ss_dssp EEECCTTTTCSHHHHHHHHHHHHHT--TEEEEEEECCCCBTTCGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHc--CCceEEEeecCCCCCccccc
Confidence 5444 7888889999999999998 45544444434467887544
|
| >3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.3e-10 Score=93.53 Aligned_cols=130 Identities=15% Similarity=0.124 Sum_probs=102.0
Q ss_pred EEEEecccCCCCCCchhHHHH-HHHHHHHHhcCceE-EEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCC
Q 022946 141 RFCMGAAWRDTIGRKTNFNQI-LEYVKDIRDMGMEV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRS 217 (289)
Q Consensus 141 ~i~i~~~~~~~~ge~~~~~~l-~e~i~~ik~~~~~i-~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~ 217 (289)
.|+|+| |||+...++ .++++.+++.++.+ ..|||.++++.++.|.+. ++.+.+++++. ++.++++++. +
T Consensus 6 ~v~~tG------GEPll~~~~~~~l~~~~~~~g~~~~l~TNG~l~~~~~~~l~~~-~d~v~isld~~~~~~~~~~~g~-~ 77 (182)
T 3can_A 6 GVTFCG------GEPLLHPEFLIDILKRCGQQGIHRAVDTTLLARKETVDEVMRN-CELLLIDLKSMDSTVHQTFCDV-P 77 (182)
T ss_dssp CEEECS------STGGGSHHHHHHHHHHHHHTTCCEEEECTTCCCHHHHHHHHHT-CSEEEEECCCSCHHHHHHHHSS-C
T ss_pred EEEEEc------ccccCCHHHHHHHHHHHHHCCCcEEEECCCCCCHHHHHHHHhh-CCEEEEECCCCCHHHHHHHhCC-C
Confidence 466665 678766666 59999888777775 457999999999999988 89999999999 9999998764 4
Q ss_pred HHHHHHHHHHHHHcCCceeecE--EeecCCCHHHHHHHHHHHhcCCCCC-CeeeeccceecCCCC
Q 022946 218 YDERLETLKHVREAGINVCSGG--IIGLGEAEEDRVGLLHTLATLPTHP-ESVPINALLAVKGTP 279 (289)
Q Consensus 218 ~~~~~~~i~~~~~~Gi~v~~~~--i~Glget~ed~~~~l~~l~~l~~~~-~~v~i~~~~p~pgTp 279 (289)
++.++++++.+++.|+.+...+ +-|+.++.+++.++++++.++. ++ ..+.+.+|.|.....
T Consensus 78 ~~~i~~~i~~l~~~g~~v~i~~~v~~~~n~n~~~~~~~~~~~~~~~-g~~~~~~l~~~~p~g~~~ 141 (182)
T 3can_A 78 NELILKNIRRVAEADFPYYIRIPLIEGVNADEKNIKLSAEFLASLP-RHPEIINLLPYHDIGKGK 141 (182)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEEEECBTTTCSHHHHHHHHHHHHHSS-SCCSEEEEEECCC-----
T ss_pred HHHHHHHHHHHHhCCCeEEEEEEEECCCCCCHHHHHHHHHHHHhCc-CccceEEEecCcccCHHH
Confidence 6999999999999998765544 4455688999999999999982 25 788889999876544
|
| >4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged DNA; HET: EEM 0TT; 2.00A {Geobacillus thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A* 4fhf_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=2e-08 Score=88.48 Aligned_cols=164 Identities=18% Similarity=0.264 Sum_probs=96.4
Q ss_pred eeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHH-HHHcCCc--EEEEecccCCCCCCchhHHHHHHHHHH
Q 022946 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQK-AKEAGST--RFCMGAAWRDTIGRKTNFNQILEYVKD 167 (289)
Q Consensus 91 ~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~-~~~~g~~--~i~i~~~~~~~~ge~~~~~~l~e~i~~ 167 (289)
.++. ..||+++|.||+....++....-.-....+++++.++. +.+.+.. .|.+++ ..+++.-........++++.
T Consensus 110 ~ln~-y~GC~~~C~YCYl~~~~~~~~~I~v~vN~~eiL~~l~~~l~~~~~~~~~i~~g~-~TDpyp~E~~~~ltr~~le~ 187 (368)
T 4fhd_A 110 AIPL-ATGCMGHCHYCYLQTTLGSKPYIRVYVNLDDIFAQAQKYINERAPEITRFEAAC-TSDIVGIDHLTHSLKKAIEF 187 (368)
T ss_dssp ECCS-EEBCSCCCTTCTHHHHTTTCCSEEEECCHHHHHHHHHHHHHHHTTSCEEEESCS-SBCHHHHHTTTCHHHHHHHH
T ss_pred eeCC-ccCCCCCCceEeccccCCCCCeEEEecCHHHHHHHHHHHHhhcCCCceEEEEEc-CCCcchhhHHHhHHHHHHHH
Confidence 4666 88999999999854333211111122578999988765 3343433 343332 22322100111223344444
Q ss_pred HHhc-C--ceEEEeCCCCCHHHHHHHHHcCCCeEecCCCchHHHHhccCCC-CCHHHHHHHHHHHHHcCCceeecEEeec
Q 022946 168 IRDM-G--MEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITT-RSYDERLETLKHVREAGINVCSGGIIGL 243 (289)
Q Consensus 168 ik~~-~--~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~~~~~~~i~~~-~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl 243 (289)
+.+. + +.+.+-...++ .+..|...|...|.+++.+ +++.+.+-++ .+.++++++++.+.++|+++...+-.=+
T Consensus 188 l~~~~~~~v~i~TKs~lid--~L~~l~~~~~v~V~~Sitt-~~l~r~~EP~aps~~~RL~Ai~~l~~aGipv~v~iaPIi 264 (368)
T 4fhd_A 188 IGATDYGRLRFVTKYEHVD--HLLDARHNGKTRFRFSINS-RYVINHFEPGTSSFDGRLAAARKVAGAGYKLGFVVAPIY 264 (368)
T ss_dssp HHHCSSEEEEEEESCCCCG--GGTTCCCTTCEEEEEEECC-HHHHHHHCTTSCCHHHHHHHHHHHHHTTCEEEEEEEEEC
T ss_pred HHhCCCceEEEEeCCcCHH--HHHhcCcCCceEEEEEEcC-HHHHHHcCCCCCCHHHHHHHHHHHHHCCCeEEEEEeCcC
Confidence 4443 3 33433333332 3444444566677778765 6777777774 4799999999999999999887765545
Q ss_pred -CCCH-HHHHHHHHHHhc
Q 022946 244 -GEAE-EDRVGLLHTLAT 259 (289)
Q Consensus 244 -get~-ed~~~~l~~l~~ 259 (289)
++++ ++..++++.+.+
T Consensus 265 P~~~~~e~y~~lle~l~~ 282 (368)
T 4fhd_A 265 RHEGWERGYFELFQELAR 282 (368)
T ss_dssp CCTTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 5554 577778776654
|
| >2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00035 Score=60.16 Aligned_cols=143 Identities=13% Similarity=0.001 Sum_probs=97.9
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc-CceEEEeCCCCCHHHHHHHHHcCCCeEec
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGLTAYNH 200 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~-~~~i~~~~g~l~~e~l~~L~~aG~~~v~i 200 (289)
++.++.++.++.+.+.|++.|.++++.. +...|.. .+..+.++.+++. +..+..-. .+.+.++...++|++.|.+
T Consensus 24 ~~~e~k~~i~~~L~~~Gv~~IE~g~~~~-~~~~p~~-~d~~~~~~~~~~~~~~~~~~l~--~~~~~i~~a~~ag~~~v~i 99 (298)
T 2cw6_A 24 VSTPVKIKLIDMLSEAGLSVIETTSFVS-PKWVPQM-GDHTEVLKGIQKFPGINYPVLT--PNLKGFEAAVAAGAKEVVI 99 (298)
T ss_dssp CCHHHHHHHHHHHHHTTCSEECCEECCC-TTTCGGG-TTHHHHHHHSCCCTTCBCCEEC--CSHHHHHHHHHTTCSEEEE
T ss_pred CCHHHHHHHHHHHHHcCcCEEEECCCcC-ccccccc-CCHHHHHHHHhhCCCCEEEEEc--CCHHhHHHHHHCCCCEEEE
Confidence 7999999999999999999987765321 1111211 2334455555533 44432211 4678899999999999998
Q ss_pred CCCch-HHHHhccCCC--CCHHHHHHHHHHHHHcCCceeecEEeec------CCCHHHHHHHHHHHhcCCCCCCeeeec
Q 022946 201 NLDTS-REFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGL------GEAEEDRVGLLHTLATLPTHPESVPIN 270 (289)
Q Consensus 201 ~let~-~~~~~~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl------get~ed~~~~l~~l~~l~~~~~~v~i~ 270 (289)
..-+. .....+++.. ..++...+.++.+++.|+.+..+++.-+ ..+.+.+.+.++.+.++ +++.+.+.
T Consensus 100 ~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~G~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--Ga~~i~l~ 176 (298)
T 2cw6_A 100 FGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSM--GCYEISLG 176 (298)
T ss_dssp EEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHTTCEEEEEEETTTCBTTTBSCCHHHHHHHHHHHHHT--TCSEEEEE
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHc--CCCEEEec
Confidence 76555 3334445443 3578888899999999999887776433 23678899999999999 56776553
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00089 Score=57.51 Aligned_cols=140 Identities=11% Similarity=0.070 Sum_probs=95.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC--chhHHHHHHHHHHHHhc-CceEEEeCCCCCHHHHHHHHHcCCCeE
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR--KTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGLTAY 198 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge--~~~~~~l~e~i~~ik~~-~~~i~~~~g~l~~e~l~~L~~aG~~~v 198 (289)
++.++.++.++.+.+.|+..|.+++... ++ | ......+.++.+++. ++++..-. .+.+.+++..++|++.|
T Consensus 23 ~~~e~k~~i~~~L~~~Gv~~IE~g~~~~---~~~~p-~~~~~~e~~~~i~~~~~~~v~~l~--~n~~~i~~a~~~G~~~V 96 (295)
T 1ydn_A 23 VPTADKIALINRLSDCGYARIEATSFVS---PKWVP-QLADSREVMAGIRRADGVRYSVLV--PNMKGYEAAAAAHADEI 96 (295)
T ss_dssp CCHHHHHHHHHHHTTTTCSEEEEEECSC---TTTCG-GGTTHHHHHHHSCCCSSSEEEEEC--SSHHHHHHHHHTTCSEE
T ss_pred cCHHHHHHHHHHHHHcCcCEEEEccCcC---ccccc-cccCHHHHHHHHHhCCCCEEEEEe--CCHHHHHHHHHCCCCEE
Confidence 8999999999999999999988765221 11 1 112455667776643 56654332 46888999999999998
Q ss_pred ecCCCchHHHHhccCCCC----CHHHHHHHHHHHHHcCCceeecEE--eec----CCCHHHHHHHHHHHhcCCCCCCeee
Q 022946 199 NHNLDTSREFYSKIITTR----SYDERLETLKHVREAGINVCSGGI--IGL----GEAEEDRVGLLHTLATLPTHPESVP 268 (289)
Q Consensus 199 ~i~let~~~~~~~i~~~~----~~~~~~~~i~~~~~~Gi~v~~~~i--~Gl----get~ed~~~~l~~l~~l~~~~~~v~ 268 (289)
.+.+.+. +.+.+.+-.. +++...+.++.+++.|+.|...+. +|. .-+++.+.+.++.+.+. +++.+.
T Consensus 97 ~i~~~~S-~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~--G~d~i~ 173 (295)
T 1ydn_A 97 AVFISAS-EGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSL--GCHEVS 173 (295)
T ss_dssp EEEEESC-HHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHHHHHHHHHH--TCSEEE
T ss_pred EEEEecC-HHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhc--CCCEEE
Confidence 8866444 2222222222 456666778999999999875544 332 24678889999888888 577766
Q ss_pred ec
Q 022946 269 IN 270 (289)
Q Consensus 269 i~ 270 (289)
+.
T Consensus 174 l~ 175 (295)
T 1ydn_A 174 LG 175 (295)
T ss_dssp EE
T ss_pred ec
Confidence 54
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0077 Score=51.82 Aligned_cols=145 Identities=12% Similarity=0.035 Sum_probs=94.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-cCceEEEeCCCCCHHHHHHHHHcCCCeE
Q 022946 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAY 198 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~~~~i~~~~g~l~~e~l~~L~~aG~~~v 198 (289)
..++.++.++.++.+.+.|++.|..++... +..-| .+.+..+.++.+.+ .++.+..-. .+.+.++...++|++.|
T Consensus 25 ~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~-~~~~~-~~~d~~~~~~~~~~~~~~~~~~l~--~~~~~i~~a~~aG~~~v 100 (302)
T 2ftp_A 25 QPIEVADKIRLVDDLSAAGLDYIEVGSFVS-PKWVP-QMAGSAEVFAGIRQRPGVTYAALA--PNLKGFEAALESGVKEV 100 (302)
T ss_dssp SCCCHHHHHHHHHHHHHTTCSEEEEEECSC-TTTCG-GGTTHHHHHHHSCCCTTSEEEEEC--CSHHHHHHHHHTTCCEE
T ss_pred CCCCHHHHHHHHHHHHHcCcCEEEECCCcC-ccccc-cccCHHHHHHHhhhcCCCEEEEEe--CCHHHHHHHHhCCcCEE
Confidence 347999999999999999999987765221 11112 11233345555542 355554333 37888999999999998
Q ss_pred ecCCCchH-HHHhccCCC--CCHHHHHHHHHHHHHcCCceeecEEeecC------CCHHHHHHHHHHHhcCCCCCCeeee
Q 022946 199 NHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLG------EAEEDRVGLLHTLATLPTHPESVPI 269 (289)
Q Consensus 199 ~i~let~~-~~~~~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i~Glg------et~ed~~~~l~~l~~l~~~~~~v~i 269 (289)
.+..-+.+ -...+++.+ .+.+...+.++.+++.|+.|...+..-++ -+++.+.+.++.+.+. +++.+.+
T Consensus 101 ~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~--G~d~i~l 178 (302)
T 2ftp_A 101 AVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRGYISCVLGCPYDGDVDPRQVAWVARELQQM--GCYEVSL 178 (302)
T ss_dssp EEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHT--TCSEEEE
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHc--CCCEEEE
Confidence 87654432 223333332 24666777888899999988766554332 3678888888888888 5777665
Q ss_pred c
Q 022946 270 N 270 (289)
Q Consensus 270 ~ 270 (289)
.
T Consensus 179 ~ 179 (302)
T 2ftp_A 179 G 179 (302)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0069 Score=54.38 Aligned_cols=137 Identities=15% Similarity=0.153 Sum_probs=90.3
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcC--ceEEEeCCCCCHHHHHHHHHcCCCeE
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG--MEVCCTLGMLEKHQAIELKKAGLTAY 198 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~--~~i~~~~g~l~~e~l~~L~~aG~~~v 198 (289)
.++.++-++.++.+.+.|++.|-++. |...| ...+.++.+.+.+ ..+.+ ....+.+.++...++|++.|
T Consensus 57 ~~s~eeKl~Ia~~L~~~Gv~~IEvG~----P~asp----~d~~~~~~i~~~~~~~~v~~-~~r~~~~di~~A~~aG~~~V 127 (423)
T 3ivs_A 57 FFDTEKKIQIAKALDNFGVDYIELTS----PVASE----QSRQDCEAICKLGLKCKILT-HIRCHMDDARVAVETGVDGV 127 (423)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEECC----TTSCH----HHHHHHHHHHTSCCSSEEEE-EEESCHHHHHHHHHTTCSEE
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEee----cccCH----HHHHHHHHHHhcCCCCEEEE-eeccChhhHHHHHHcCCCEE
Confidence 48999999999999999999998753 22223 3334444444333 33322 12245667889999999998
Q ss_pred ecCCCchHHHHh--ccCCC--CCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeee
Q 022946 199 NHNLDTSREFYS--KIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPI 269 (289)
Q Consensus 199 ~i~let~~~~~~--~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i 269 (289)
.+.+-+.+ .+. +++.. ...+...+.++.+++.|+.|..+..-++..+++.+.+.++.+.+. +++.+.+
T Consensus 128 ~i~~s~Sd-~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~V~~~~eda~r~d~~~~~~v~~~~~~~--Ga~~i~l 199 (423)
T 3ivs_A 128 DVVIGTSQ-YLRKYSHGKDMTYIIDSATEVINFVKSKGIEVRFSSEDSFRSDLVDLLSLYKAVDKI--GVNRVGI 199 (423)
T ss_dssp EEEEEC--------------CHHHHHHHHHHHHHHTTTCEEEEEEESGGGSCHHHHHHHHHHHHHH--CCSEEEE
T ss_pred EEEeeccH-HHHHHHcCCCHHHHHHHHHHHHHHHHHCCCEEEEEEccCcCCCHHHHHHHHHHHHHh--CCCcccc
Confidence 88765542 222 22221 236777789999999999988776666667788888998988888 4565543
|
| >1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0091 Score=51.45 Aligned_cols=144 Identities=9% Similarity=0.051 Sum_probs=93.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-cCceEEEeCCCCCHHHHHHHHHcCCCeE
Q 022946 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAY 198 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~~~~i~~~~g~l~~e~l~~L~~aG~~~v 198 (289)
..++.++.++.++.+.+.|++.|.+++... +..-| .+.+..+.++.+++ .+..+..-. .+.+.++...++|++.|
T Consensus 23 ~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~-~~~~p-~~~d~~~~~~~~~~~~~~~~~~l~--~~~~~i~~a~~~g~~~v 98 (307)
T 1ydo_A 23 VWIATEDKITWINQLSRTGLSYIEITSFVH-PKWIP-ALRDAIDVAKGIDREKGVTYAALV--PNQRGLENALEGGINEA 98 (307)
T ss_dssp SCCCHHHHHHHHHHHHTTTCSEEEEEECSC-TTTCG-GGTTHHHHHHHSCCCTTCEEEEEC--CSHHHHHHHHHHTCSEE
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEECCCcC-ccccc-ccCCHHHHHHHhhhcCCCeEEEEe--CCHHhHHHHHhCCcCEE
Confidence 347999999999999999999998865321 11112 11222344555542 244443222 35778999999999999
Q ss_pred ecCCCchHH-HHhccCCC--CCHHHHHHHHHHHHHcCCceeecEEeecC------CCHHHHHHHHHHHhcCCCCCCeeee
Q 022946 199 NHNLDTSRE-FYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLG------EAEEDRVGLLHTLATLPTHPESVPI 269 (289)
Q Consensus 199 ~i~let~~~-~~~~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i~Glg------et~ed~~~~l~~l~~l~~~~~~v~i 269 (289)
.+..-+.+- ...+++.. ...+...+.++.+++.|+.+...+..-++ -+++.+.+.++.+.++ +++.+.+
T Consensus 99 ~i~~~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--Ga~~i~l 176 (307)
T 1ydo_A 99 CVFMSASETHNRKNINKSTSESLHILKQVNNDAQKANLTTRAYLSTVFGCPYEKDVPIEQVIRLSEALFEF--GISELSL 176 (307)
T ss_dssp EEEEESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHH--TCSCEEE
T ss_pred EEEeecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhc--CCCEEEE
Confidence 887655432 22333322 13566778888899999998777666442 3678888899888888 4666554
|
| >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0045 Score=54.14 Aligned_cols=140 Identities=11% Similarity=0.085 Sum_probs=90.3
Q ss_pred CCHHHHHHHHH-HHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH---h-cCceEEEeCCCCCHHHHHHHHHcCCC
Q 022946 122 MTKDAVMQAAQ-KAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR---D-MGMEVCCTLGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 122 ~~~eei~~~~~-~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik---~-~~~~i~~~~g~l~~e~l~~L~~aG~~ 196 (289)
++.++.++.++ .+.+.|++.|.+++... .+..++.+.++.+... . .+..+..-. ...+.++...++|++
T Consensus 38 ~~~~~k~~i~~~~L~~~Gv~~IE~g~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~i~~l~--~~~~~i~~a~~~g~~ 111 (337)
T 3ble_A 38 FSTSEKLNIAKFLLQKLNVDRVEIASARV----SKGELETVQKIMEWAATEQLTERIEILGFV--DGNKTVDWIKDSGAK 111 (337)
T ss_dssp CCHHHHHHHHHHHHHTTCCSEEEEEETTS----CTTHHHHHHHHHHHHHHTTCGGGEEEEEES--STTHHHHHHHHHTCC
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCCC----ChhHHHHHHHHHhhhhhhccCCCCeEEEEc--cchhhHHHHHHCCCC
Confidence 79999999999 99999999998865321 1333334433333211 1 122332211 112378888999999
Q ss_pred eEecCCCch-HHHHhccCCC--CCHHHHHHHHHHHHHcCCceeecEEe---ecCCCHHHHHHHHHHHhcCCCCCCeeee
Q 022946 197 AYNHNLDTS-REFYSKIITT--RSYDERLETLKHVREAGINVCSGGII---GLGEAEEDRVGLLHTLATLPTHPESVPI 269 (289)
Q Consensus 197 ~v~i~let~-~~~~~~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i~---Glget~ed~~~~l~~l~~l~~~~~~v~i 269 (289)
.|.+.+-+. .....+++.. ..++...+.++.+++.|+.+..++.. +...+++.+.+.++.+.++ +++.+.+
T Consensus 112 ~v~i~~~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--Ga~~i~l 188 (337)
T 3ble_A 112 VLNLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKSGLKINVYLEDWSNGFRNSPDYVKSLVEHLSKE--HIERIFL 188 (337)
T ss_dssp EEEEEEECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCEEEEEEETHHHHHHHCHHHHHHHHHHHHTS--CCSEEEE
T ss_pred EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCcCCHHHHHHHHHHHHHc--CCCEEEE
Confidence 998876665 3333444432 24677778888899999988766554 3334678888888888888 4666654
|
| >3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0055 Score=52.48 Aligned_cols=142 Identities=14% Similarity=0.016 Sum_probs=85.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceE--EEeCCCCC-HHHHHHHHHcCCC
Q 022946 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEV--CCTLGMLE-KHQAIELKKAGLT 196 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i--~~~~g~l~-~e~l~~L~~aG~~ 196 (289)
..++.++-++.++.+.+.|++.|-+++. ...|..++.+..+.+..+ +..+ .+.+..-+ +..++.++++|++
T Consensus 22 ~~~~~~~K~~i~~~L~~~Gv~~IE~g~p----~~~~~d~e~v~~i~~~~~--~~~i~~l~~~~~~di~~a~~~~~~ag~~ 95 (293)
T 3ewb_X 22 VNFDVKEKIQIALQLEKLGIDVIEAGFP----ISSPGDFECVKAIAKAIK--HCSVTGLARCVEGDIDRAEEALKDAVSP 95 (293)
T ss_dssp -CCCHHHHHHHHHHHHHHTCSEEEEECG----GGCHHHHHHHHHHHHHCC--SSEEEEEEESSHHHHHHHHHHHTTCSSE
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeCC----CCCccHHHHHHHHHHhcC--CCEEEEEecCCHHHHHHHHHHHhhcCCC
Confidence 3489999999999999999999987642 112334444444333322 3333 33221101 2233445557999
Q ss_pred eEecCCCchH-HHHhccCCC--CCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeee
Q 022946 197 AYNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPI 269 (289)
Q Consensus 197 ~v~i~let~~-~~~~~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i 269 (289)
.|.+.+-+.+ ....+++.. ...+...+.++.+++.|+.+..+...+..-+++.+.+.++.+.++ +.+.+.+
T Consensus 96 ~v~i~~~~Sd~~~~~nl~~s~~e~l~~~~~~v~~a~~~g~~v~~~~~d~~~~~~~~~~~~~~~~~~~--G~~~i~l 169 (293)
T 3ewb_X 96 QIHIFLATSDVHMEYKLKMSRAEVLASIKHHISYARQKFDVVQFSPEDATRSDRAFLIEAVQTAIDA--GATVINI 169 (293)
T ss_dssp EEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCSCEEEEEETGGGSCHHHHHHHHHHHHHT--TCCEEEE
T ss_pred EEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccCCCCCHHHHHHHHHHHHHc--CCCEEEe
Confidence 8887665542 222333322 134556677777888998877655544445677788899988888 4666544
|
| >3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.023 Score=50.21 Aligned_cols=138 Identities=14% Similarity=0.097 Sum_probs=84.0
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceE--EEeCCCCCHHHH----HHHHHcC
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEV--CCTLGMLEKHQA----IELKKAG 194 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i--~~~~g~l~~e~l----~~L~~aG 194 (289)
.++.++-++.++.+.+.|++.|-.+. +...|..++.+..+.+.++ +..+ .+.. ..+.+ +.++.+|
T Consensus 30 ~~~~~~Kl~ia~~L~~~Gv~~IE~g~----p~~~~~d~e~v~~i~~~~~--~~~i~~l~r~---~~~di~~a~~al~~ag 100 (370)
T 3rmj_A 30 AMTKEEKIRVARQLEKLGVDIIEAGF----AAASPGDFEAVNAIAKTIT--KSTVCSLSRA---IERDIRQAGEAVAPAP 100 (370)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEEEE----GGGCHHHHHHHHHHHTTCS--SSEEEEEEES---SHHHHHHHHHHHTTSS
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEeC----CCCCHHHHHHHHHHHHhCC--CCeEEEEecC---CHHHHHHHHHHHhhCC
Confidence 48999999999999999999887754 1222444454444433222 2333 2221 23333 4445589
Q ss_pred CCeEecCCCch-HHHHhccCCC--CCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeee
Q 022946 195 LTAYNHNLDTS-REFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPI 269 (289)
Q Consensus 195 ~~~v~i~let~-~~~~~~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i 269 (289)
++.|.+.+-+. -....+++.. ...+...+.++.+++.|..+..+...+..-+++.+.+.++.+.+. +.+.+.+
T Consensus 101 ~~~v~if~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~r~~~~~~~~~~~~~~~~--Ga~~i~l 176 (370)
T 3rmj_A 101 KKRIHTFIATSPIHMEYKLKMKPKQVIEAAVKAVKIAREYTDDVEFSCEDALRSEIDFLAEICGAVIEA--GATTINI 176 (370)
T ss_dssp SEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHTTTCSCEEEEEETGGGSCHHHHHHHHHHHHHH--TCCEEEE
T ss_pred CCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEecCCCCccCHHHHHHHHHHHHHc--CCCEEEe
Confidence 99988776655 2233333332 134555566777888888776555555456677778888888877 4555543
|
| >1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.13 Score=43.61 Aligned_cols=138 Identities=14% Similarity=0.194 Sum_probs=82.5
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCC----CCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCC
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI----GRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~----ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~ 196 (289)
+.+.+.+++.++...+.|.+-|-++|....++ .+...+++++..++.+++.++.+. ..+...+.+++-.++|.+
T Consensus 25 ~~~~~~a~~~a~~~v~~GAdiIDIGgestrpga~~v~~~eE~~Rv~pvi~~l~~~~~piS--IDT~~~~va~aAl~aGa~ 102 (280)
T 1eye_A 25 YLDLDDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETSRVIPVVKELAAQGITVS--IDTMRADVARAALQNGAQ 102 (280)
T ss_dssp CCSHHHHHHHHHHHHHTTCSEEEEECC--------------HHHHHHHHHHHHHTTCCEE--EECSCHHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCCCCHHHHHHHHHHHHHHhhcCCCEEE--EeCCCHHHHHHHHHcCCC
Confidence 46899999999999999999888876322221 224567888888888875454432 233556666666666666
Q ss_pred eEe-cCCCch-HHHHhc---cC--------C--C----------CC-----HHHHHHHHHHHHHcCCc---eeecEEeec
Q 022946 197 AYN-HNLDTS-REFYSK---II--------T--T----------RS-----YDERLETLKHVREAGIN---VCSGGIIGL 243 (289)
Q Consensus 197 ~v~-i~let~-~~~~~~---i~--------~--~----------~~-----~~~~~~~i~~~~~~Gi~---v~~~~i~Gl 243 (289)
-|+ ++-... +++++. .. + + .+ .+...+.++.+.++|++ +..+--+|+
T Consensus 103 iINdvsg~~~d~~m~~~~a~~~~~vVlmh~~G~p~tm~~~~~~y~dv~~~v~~~l~~~i~~a~~~Gi~~~~IilDPg~Gf 182 (280)
T 1eye_A 103 MVNDVSGGRADPAMGPLLAEADVPWVLMHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAVAAGVDPARLVLDPGLGF 182 (280)
T ss_dssp EEEETTTTSSCTTHHHHHHHHTCCEEEECCCCSCTTCTTSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTS
T ss_pred EEEECCCCCCCHHHHHHHHHhCCeEEEEcCCCCCcchhhcCcchhHHHHHHHHHHHHHHHHHHHcCCChhhEEEECCCCc
Confidence 554 332221 222111 00 0 0 01 45556778888899996 666666788
Q ss_pred CCCHHHHHHHHHHHhcC
Q 022946 244 GEAEEDRVGLLHTLATL 260 (289)
Q Consensus 244 get~ed~~~~l~~l~~l 260 (289)
+.+.++-.+++..+..+
T Consensus 183 ~k~~~~n~~ll~~l~~~ 199 (280)
T 1eye_A 183 AKTAQHNWAILHALPEL 199 (280)
T ss_dssp SCCHHHHHHHHHTHHHH
T ss_pred ccCHHHHHHHHHHHHHh
Confidence 88887777666666544
|
| >3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.019 Score=49.79 Aligned_cols=139 Identities=12% Similarity=0.119 Sum_probs=83.9
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHH----HHHHcCCC
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAI----ELKKAGLT 196 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~----~L~~aG~~ 196 (289)
.++.++-++.++.+.+.|++.|-++. +...|..++.+.++.+.+ .+..+..- .....+.++ .++.+|++
T Consensus 24 ~~~~~~Kl~ia~~L~~~Gv~~IE~g~----p~~~~~d~e~v~~i~~~~--~~~~i~~l-~r~~~~~i~~a~~al~~ag~~ 96 (325)
T 3eeg_A 24 QLNTEEKIIVAKALDELGVDVIEAGF----PVSSPGDFNSVVEITKAV--TRPTICAL-TRAKEADINIAGEALRFAKRS 96 (325)
T ss_dssp -CCTTHHHHHHHHHHHHTCSEEEEEC----TTSCHHHHHHHHHHHHHC--CSSEEEEE-CCSCHHHHHHHHHHHTTCSSE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC----CCCCHhHHHHHHHHHHhC--CCCEEEEe-ecCCHHHHHHHHHhhcccCCC
Confidence 47889999999999999999987753 222244444444433332 23343221 112244444 44445999
Q ss_pred eEecCCCchH-HHHhccCC--CCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeee
Q 022946 197 AYNHNLDTSR-EFYSKIIT--TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVP 268 (289)
Q Consensus 197 ~v~i~let~~-~~~~~i~~--~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~ 268 (289)
.|.+.+-+.+ ....+++. ....+...+.++.+++.|+.+..+...+..-+++.+.+.++.+.++ +++.+.
T Consensus 97 ~v~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~~d~~~~~~~~~~~~~~~~~~~--G~~~i~ 169 (325)
T 3eeg_A 97 RIHTGIGSSDIHIEHKLRSTRENILEMAVAAVKQAKKVVHEVEFFCEDAGRADQAFLARMVEAVIEA--GADVVN 169 (325)
T ss_dssp EEEEEEECSHHHHC----CCCTTGGGTTHHHHHHHHTTSSEEEEEEETGGGSCHHHHHHHHHHHHHH--TCSEEE
T ss_pred EEEEEecccHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEccccccchHHHHHHHHHHHHhc--CCCEEE
Confidence 8887655542 22233333 3457778888888999998876655554455667777888888777 455544
|
| >3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.13 Score=44.11 Aligned_cols=138 Identities=14% Similarity=0.246 Sum_probs=87.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC--------chhHHHHHHHHHHHHh-cCceEEEeCCCCCHHHHHHH
Q 022946 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR--------KTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIEL 190 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge--------~~~~~~l~e~i~~ik~-~~~~i~~~~g~l~~e~l~~L 190 (289)
++.+.+.+++.++...+.|.+-|-++|....|+.+ ....+++...++.+++ .++.+ +..+...+++++-
T Consensus 44 ~~~~~~~al~~A~~~v~~GAdIIDIGgeSTrPga~~~~~~V~~~eE~~Rv~pvI~~l~~~~~vpI--SIDT~~~~Va~aA 121 (314)
T 3tr9_A 44 PHLDLNSALRTAEKMVDEGADILDIGGEATNPFVDIKTDSPSTQIELDRLLPVIDAIKKRFPQLI--SVDTSRPRVMREA 121 (314)
T ss_dssp BCCSHHHHHHHHHHHHHTTCSEEEEECCCSCTTC-----CHHHHHHHHHHHHHHHHHHHHCCSEE--EEECSCHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhCCCeE--EEeCCCHHHHHHH
Confidence 34689999999999999999988887643333322 2455678888888874 35444 4455778888877
Q ss_pred HHcCCCeEe-cCCCchHHHHh---ccC--------CC--CC-------------HHHHHHHHHHHHHcCCc---eeecEE
Q 022946 191 KKAGLTAYN-HNLDTSREFYS---KII--------TT--RS-------------YDERLETLKHVREAGIN---VCSGGI 240 (289)
Q Consensus 191 ~~aG~~~v~-i~let~~~~~~---~i~--------~~--~~-------------~~~~~~~i~~~~~~Gi~---v~~~~i 240 (289)
.++|.+-|+ ++-...+++++ +.. ++ .+ .+...+.++.+.++|+. +..+--
T Consensus 122 l~aGa~iINDVsg~~~~~m~~v~a~~g~~vVlMh~~G~P~tmq~~~~ydvv~ev~~~l~~~i~~a~~~GI~~~~IilDPG 201 (314)
T 3tr9_A 122 VNTGADMINDQRALQLDDALTTVSALKTPVCLMHFPSETRKPGSTTHFYFLQSVKKELQESIQRCKKAGISEDRIIIDPG 201 (314)
T ss_dssp HHHTCCEEEETTTTCSTTHHHHHHHHTCCEEEECCCCTTCCTTSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEECC
T ss_pred HHcCCCEEEECCCCCchHHHHHHHHhCCeEEEECCCCCCcccccccccchHHHHHHHHHHHHHHHHHcCCCHhHEEEeCC
Confidence 778888776 44332222222 110 11 11 34455677778889994 555555
Q ss_pred ee---cCCCHHHHHHHHHHHhc
Q 022946 241 IG---LGEAEEDRVGLLHTLAT 259 (289)
Q Consensus 241 ~G---lget~ed~~~~l~~l~~ 259 (289)
+| ++.|.++-.++++.+..
T Consensus 202 ~G~~~F~Kt~~~n~~lL~~l~~ 223 (314)
T 3tr9_A 202 FGQGNYGKNVSENFYLLNKLPE 223 (314)
T ss_dssp CCSGGGCCCHHHHHHHHHTTHH
T ss_pred CCchhhcCCHHHHHHHHHHHHH
Confidence 68 88888866666555543
|
| >2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.041 Score=48.83 Aligned_cols=129 Identities=16% Similarity=0.181 Sum_probs=84.3
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCc--eEEEeCCCCCHHHHHHHHHcCCCeE
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGM--EVCCTLGMLEKHQAIELKKAGLTAY 198 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~--~i~~~~g~l~~e~l~~L~~aG~~~v 198 (289)
.++.++.++.++.+.+.|++.|-+++ |...+...+.++.+++.+. .+.+-+- -..+.++...++|++.|
T Consensus 21 ~~~~~~k~~ia~~L~~~Gv~~IE~g~--------p~~~~~~~~~~~~i~~~~~~~~v~~~~r-~~~~di~~a~~~g~~~v 91 (382)
T 2ztj_A 21 NFSTQDKVEIAKALDEFGIEYIEVTT--------PVASPQSRKDAEVLASLGLKAKVVTHIQ-CRLDAAKVAVETGVQGI 91 (382)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEECC--------TTSCHHHHHHHHHHHTSCCSSEEEEEEE-SCHHHHHHHHHTTCSEE
T ss_pred CcCHHHHHHHHHHHHHcCcCEEEEcC--------CcCCHHHHHHHHHHHhcCCCcEEEEEcc-cChhhHHHHHHcCCCEE
Confidence 48999999999999999999998754 1122344456666664433 3332221 23566889999999988
Q ss_pred ecCCCchHHHHhccCCCCC----HHHHHHHHHHHHHcC--CceeecEEeecCCCHHHHHHHHHHHhcC
Q 022946 199 NHNLDTSREFYSKIITTRS----YDERLETLKHVREAG--INVCSGGIIGLGEAEEDRVGLLHTLATL 260 (289)
Q Consensus 199 ~i~let~~~~~~~i~~~~~----~~~~~~~i~~~~~~G--i~v~~~~i~Glget~ed~~~~l~~l~~l 260 (289)
.+.+-+.+ .+.+ .-+.+ .+...+.++.+++.| +.+..++.-+...+++.+.+.++.+.+.
T Consensus 92 ~i~~~~s~-~~~~-~~~~s~~e~l~~~~~~v~~ak~~g~~~~v~~~~ed~~~~~~~~~~~~~~~~~~~ 157 (382)
T 2ztj_A 92 DLLFGTSK-YLRA-PHGRDIPRIIEEAKEVIAYIREAAPHVEVRFSAEDTFRSEEQDLLAVYEAVAPY 157 (382)
T ss_dssp EEEECC----------CCCHHHHHHHHHHHHHHHHHHCTTSEEEEEETTTTTSCHHHHHHHHHHHGGG
T ss_pred EEEeccCH-HHHH-HhCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 87664442 3333 33334 456778888899999 8877666555566777788888877765
|
| >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.071 Score=43.33 Aligned_cols=142 Identities=13% Similarity=0.131 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCC-C--C-CHHHHHHHHHcCCCeE
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG-M--L-EKHQAIELKKAGLTAY 198 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g-~--l-~~e~l~~L~~aG~~~v 198 (289)
..+.+.+.++.+++.|++.|+|+.-. .-| ....+.+.++++..+.+.+.++.... . - ..+.++.|.+.|+++|
T Consensus 74 E~~~M~~Di~~~~~~GadGvV~G~Lt--~dg-~iD~~~~~~Li~~a~~~~vTFHRAFD~~~~~d~~~ale~L~~lGv~rI 150 (224)
T 2bdq_A 74 ELRIMEEDILRAVELESDALVLGILT--SNN-HIDTEAIEQLLPATQGLPLVFHMAFDVIPKSDQKKSIDQLVALGFTRI 150 (224)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEECCBC--TTS-SBCHHHHHHHHHHHTTCCEEECGGGGGSCTTTHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeeEC--CCC-CcCHHHHHHHHHHhCCCeEEEECchhccCCcCHHHHHHHHHHcCCCEE
Confidence 44667778888899999999986522 223 35667777887766544433321111 1 2 2455899999999999
Q ss_pred ecCCCchHHHHhccCCCCCHHHHHHHHHHHHH-cCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCC
Q 022946 199 NHNLDTSREFYSKIITTRSYDERLETLKHVRE-AGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 277 (289)
Q Consensus 199 ~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~-~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pg 277 (289)
.-+=... +.+..+-++.++.+.+ ++- ...+|.|=|-+.+.+...++.. +...+....++-.+|
T Consensus 151 LTSG~~~---------~~~a~~g~~~L~~Lv~~a~~--ri~Im~GgGV~~~Ni~~l~~~t-----Gv~e~H~s~i~~~~~ 214 (224)
T 2bdq_A 151 LLHGSSN---------GEPIIENIKHIKALVEYANN--RIEIMVGGGVTAENYQYICQET-----GVKQAHGTRITQMAG 214 (224)
T ss_dssp EECSCSS---------CCCGGGGHHHHHHHHHHHTT--SSEEEECSSCCTTTHHHHHHHH-----TCCEEEETTCC----
T ss_pred ECCCCCC---------CCcHHHHHHHHHHHHHhhCC--CeEEEeCCCCCHHHHHHHHHhh-----CCCEEccccccCCCC
Confidence 7432110 0112233333433322 221 2456887777777666655443 467888889999999
Q ss_pred CCCCCC
Q 022946 278 TPLQDQ 283 (289)
Q Consensus 278 Tpl~~~ 283 (289)
+|++++
T Consensus 215 ~~~~~~ 220 (224)
T 2bdq_A 215 DPLEHH 220 (224)
T ss_dssp ------
T ss_pred Ccchhc
Confidence 999875
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.048 Score=47.71 Aligned_cols=79 Identities=16% Similarity=0.098 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEe----ccc-CCCCCCchhHHHHHHHHHHHHhc--CceEE--EeCCCCCHHHHHHHH
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMG----AAW-RDTIGRKTNFNQILEYVKDIRDM--GMEVC--CTLGMLEKHQAIELK 191 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~----~~~-~~~~ge~~~~~~l~e~i~~ik~~--~~~i~--~~~g~l~~e~l~~L~ 191 (289)
.++.++.++.++.+.+.|++.|.++ .++ .+..| +. ...-.+.++.+++. +..+. ...+.-..+.+++..
T Consensus 26 ~~~~e~k~~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~g-~~-~~~~~e~l~~i~~~~~~~~i~~l~~p~~~~~~~i~~a~ 103 (345)
T 1nvm_A 26 QYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYG-FG-RHTDLEYIEAVAGEISHAQIATLLLPGIGSVHDLKNAY 103 (345)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTB-CC-SSCHHHHHHHHHTTCSSSEEEEEECBTTBCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccc-CC-CCCHHHHHHHHHhhCCCCEEEEEecCCcccHHHHHHHH
Confidence 3799999999999999999999885 111 10011 10 11233445555432 44432 233445688899999
Q ss_pred HcCCCeEecC
Q 022946 192 KAGLTAYNHN 201 (289)
Q Consensus 192 ~aG~~~v~i~ 201 (289)
++|++.+.+.
T Consensus 104 ~aGvd~v~I~ 113 (345)
T 1nvm_A 104 QAGARVVRVA 113 (345)
T ss_dssp HHTCCEEEEE
T ss_pred hCCcCEEEEE
Confidence 9999988764
|
| >1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A | Back alignment and structure |
|---|
Probab=95.98 E-value=0.33 Score=41.09 Aligned_cols=138 Identities=15% Similarity=0.138 Sum_probs=88.4
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC----chhHHHHHHHHHHHHh-cCceEEEeCCCCCHHHHHHHHHcCC
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR----KTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGL 195 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge----~~~~~~l~e~i~~ik~-~~~~i~~~~g~l~~e~l~~L~~aG~ 195 (289)
..+.+.+++.++...+.|.+-+-+++....|+.+ ....+++...++.+++ .++.+. ..+...+.+++-.++|.
T Consensus 34 ~~~~~~a~~~a~~~v~~GAdiIDIGgestrPga~~v~~~eE~~rv~pvi~~l~~~~~~piS--IDT~~~~va~aAl~aGa 111 (282)
T 1aj0_A 34 HNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRFEVWIS--VDTSKPEVIRESAKVGA 111 (282)
T ss_dssp CTHHHHHHHHHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHCCCEEE--EECCCHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhhcCCeEE--EeCCCHHHHHHHHHcCC
Confidence 3588999999999999999999887733333322 3466778888888874 355543 33455666666666676
Q ss_pred CeEe-cCCCchHHHHhc---cC--------C--CCC--------------HHHHHHHHHHHHHcCCc---eeecEEeecC
Q 022946 196 TAYN-HNLDTSREFYSK---II--------T--TRS--------------YDERLETLKHVREAGIN---VCSGGIIGLG 244 (289)
Q Consensus 196 ~~v~-i~let~~~~~~~---i~--------~--~~~--------------~~~~~~~i~~~~~~Gi~---v~~~~i~Glg 244 (289)
+-|+ ++-...++.++. .. + +.+ .+...+.++.+.++|++ +..+--+|++
T Consensus 112 ~iINdvsg~~d~~~~~~~a~~~~~vVlmh~~G~p~tm~~~~~y~d~~~ev~~~l~~~i~~a~~~Gi~~~~IilDPg~gf~ 191 (282)
T 1aj0_A 112 HIINDIRSLSEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQAGIAKEKLLLDPGFGFG 191 (282)
T ss_dssp CEEEETTTTCSTTHHHHHHHHTCCEEEECCSSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSS
T ss_pred CEEEECCCCCCHHHHHHHHHhCCeEEEEccCCCCccccccCccchHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCcc
Confidence 6665 332211222211 00 0 011 45666777888899995 6666666778
Q ss_pred CCHHHHHHHHHHHhcC
Q 022946 245 EAEEDRVGLLHTLATL 260 (289)
Q Consensus 245 et~ed~~~~l~~l~~l 260 (289)
.+.++-.++++.+..+
T Consensus 192 k~~~~n~~ll~~l~~~ 207 (282)
T 1aj0_A 192 KNLSHNYSLLARLAEF 207 (282)
T ss_dssp CCHHHHHHHHHTGGGG
T ss_pred cCHHHHHHHHHHHHHH
Confidence 8888877777777665
|
| >2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.25 Score=42.05 Aligned_cols=138 Identities=15% Similarity=0.236 Sum_probs=87.0
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCC----CCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCC
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI----GRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~----ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~ 196 (289)
+.+.+.+++.++...+.|.+-+-++|....|+ .+...+++++..++.+++.++.+ +..+...+++++-.++|.+
T Consensus 42 ~~~~~~a~~~a~~~v~~GAdiIDIGgeSTrPga~~v~~~eE~~Rv~pvi~~l~~~~vpi--SIDT~~~~Va~aAl~aGa~ 119 (294)
T 2y5s_A 42 FLARDDALRRAERMIAEGADLLDIGGESTRPGAPPVPLDEELARVIPLVEALRPLNVPL--SIDTYKPAVMRAALAAGAD 119 (294)
T ss_dssp --CTTHHHHHHHHHHHTTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHGGGCSCE--EEECCCHHHHHHHHHHTCS
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHhhCCCeE--EEECCCHHHHHHHHHcCCC
Confidence 35789999999999999999888877332232 22356788888888887545444 3344566777666666776
Q ss_pred eEe-cCCCchHHHHhccCC-------------CC----------C-----HHHHHHHHHHHHHcCCc---eeecEEeecC
Q 022946 197 AYN-HNLDTSREFYSKIIT-------------TR----------S-----YDERLETLKHVREAGIN---VCSGGIIGLG 244 (289)
Q Consensus 197 ~v~-i~let~~~~~~~i~~-------------~~----------~-----~~~~~~~i~~~~~~Gi~---v~~~~i~Glg 244 (289)
-|+ ++....+++++.+.. +. + .+...+.++.+.++|+. +..+--+|++
T Consensus 120 iINdVsg~~d~~m~~~~a~~~~~vVlmh~~G~p~tm~~~~~~y~dv~~ev~~~l~~~i~~a~~~Gi~~~~IilDPG~Gf~ 199 (294)
T 2y5s_A 120 LINDIWGFRQPGAIDAVRDGNSGLCAMHMLGEPQTMQVGEPDYGDVVTDVRDFLAARAQALRDAGVAAERICVDPGFGFG 199 (294)
T ss_dssp EEEETTTTCSTTHHHHHSSSSCEEEEECCCEETTTTEECCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSS
T ss_pred EEEECCCCCchHHHHHHHHhCCCEEEECCCCCCccccccCCccccHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCccc
Confidence 665 333212222211110 00 1 34455677778889996 6666666778
Q ss_pred CCH-HHHHHHHHHHhcC
Q 022946 245 EAE-EDRVGLLHTLATL 260 (289)
Q Consensus 245 et~-ed~~~~l~~l~~l 260 (289)
.|. ++-.++++.+..+
T Consensus 200 kt~~~~n~~ll~~l~~l 216 (294)
T 2y5s_A 200 KAVVDDNYALLAALPDT 216 (294)
T ss_dssp SCTTHHHHHHHHTGGGG
T ss_pred ccchHHHHHHHHHHHHH
Confidence 888 8778888877766
|
| >4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.27 Score=41.16 Aligned_cols=137 Identities=12% Similarity=0.200 Sum_probs=85.2
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC----chhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCC
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR----KTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge----~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~ 196 (289)
+.+.+..++.++.+.+.|.+-+=++|-..-|+.+ ...+++++..++.+++.++. .+..+...+++++-.++|.+
T Consensus 26 ~~~~~~a~~~a~~m~~~GAdiIDIGgeSTRPga~~vs~eeE~~Rv~pvi~~l~~~~v~--iSIDT~~~~Va~~al~aGa~ 103 (270)
T 4hb7_A 26 FNNVETAINRVKAMIDEGADIIDVGGVSTRPGHEMVTLEEELNRVLPVVEAIVGFDVK--ISVDTFRSEVAEACLKLGVD 103 (270)
T ss_dssp -CHHHHHHHHHHHHHHTTCSEEEEESCCCSTTCCCCCHHHHHHHHHHHHHHHTTSSSE--EEEECSCHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCCCchHHHHHHHHHHHHHhhcCCCe--EEEECCCHHHHHHHHHhccc
Confidence 3588999999999999999988887744444333 25668888888888765444 34455667777777777887
Q ss_pred eEe-cCCCch-HHHHhccC--------------CCC-C-H----HHHHHHHHHHHHcCCc---eeecEEeecCCCHHHHH
Q 022946 197 AYN-HNLDTS-REFYSKII--------------TTR-S-Y----DERLETLKHVREAGIN---VCSGGIIGLGEAEEDRV 251 (289)
Q Consensus 197 ~v~-i~let~-~~~~~~i~--------------~~~-~-~----~~~~~~i~~~~~~Gi~---v~~~~i~Glget~ed~~ 251 (289)
-|+ ++--.. +++++.+. +.. + . +...+.++.+.++|+. +..+-=+|+|-|.++=.
T Consensus 104 iINDVs~g~~d~~m~~~va~~~~~~vlMH~~~~p~~~~vv~ev~~~l~~~i~~a~~aGI~~~~IilDPGiGFgKt~~~N~ 183 (270)
T 4hb7_A 104 MINDQWAGLYDHRMFQIVAKYDAEIILMHNGNGNRDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWLDPGIGFAKTRNEEA 183 (270)
T ss_dssp EEEETTTTSSCTHHHHHHHHTTCEEEEECCCSSCCSSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHH
T ss_pred eeccccccccchhHHHHHHHcCCCeEEeccccCCccccchhHHHHHHHHHHHHHHHcCCCCceEEEeCCCCcccccccHH
Confidence 776 432111 22222111 111 1 2 3344556778889984 44444456788888766
Q ss_pred HHHHHHhc
Q 022946 252 GLLHTLAT 259 (289)
Q Consensus 252 ~~l~~l~~ 259 (289)
+++..+..
T Consensus 184 ~ll~~l~~ 191 (270)
T 4hb7_A 184 EVMARLDE 191 (270)
T ss_dssp HHHTCHHH
T ss_pred HHHhhHHH
Confidence 55554443
|
| >2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.15 Score=43.41 Aligned_cols=140 Identities=14% Similarity=0.183 Sum_probs=74.6
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCC----CCchhHHHHHHHHHHHHhcCceEEEe------------------
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI----GRKTNFNQILEYVKDIRDMGMEVCCT------------------ 178 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~----ge~~~~~~l~e~i~~ik~~~~~i~~~------------------ 178 (289)
+.+.+.+++.++...+.|.+-+-+++....++ .+....++++..++.+++.++.+.+.
T Consensus 48 ~~~~~~a~~~a~~~v~~GAdIIDIGgeSTrPga~~v~~~eE~~Rv~pvI~~l~~~~vpiSIDT~~~~Va~aAl~aGa~iI 127 (294)
T 2dqw_A 48 YLDPERALERAREMVAEGADILDLGAESTRPGAAPVPVEEEKRRLLPVLEAVLSLGVPVSVDTRKPEVAEEALKLGAHLL 127 (294)
T ss_dssp -----CCHHHHHHHHHHTCSEEEEECC-----------CCHHHHHHHHHHHHHTTCSCEEEECSCHHHHHHHHHHTCSEE
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhCCCEE
Confidence 35788899999999999999888876332221 23457788999998887444433221
Q ss_pred ---CCCCCHHHHHHHHHcCCCeEecCCC-chHHHHhccCC-CCC----HHHHHHHHHHHHHcCCc-eeecEEeecCCCHH
Q 022946 179 ---LGMLEKHQAIELKKAGLTAYNHNLD-TSREFYSKIIT-TRS----YDERLETLKHVREAGIN-VCSGGIIGLGEAEE 248 (289)
Q Consensus 179 ---~g~l~~e~l~~L~~aG~~~v~i~le-t~~~~~~~i~~-~~~----~~~~~~~i~~~~~~Gi~-v~~~~i~Glget~e 248 (289)
.|..+++.++..++.|+-.+.+..+ +.++.-+.... ..- .+...+.++.+.++|+. +..+--+|++.|.+
T Consensus 128 NdVsg~~d~~m~~v~a~~~~~vVlmh~~eG~p~tm~~~~~y~dv~~ev~~~l~~~i~~a~~~Gi~~IilDPG~Gf~kt~~ 207 (294)
T 2dqw_A 128 NDVTGLRDERMVALAARHGVAAVVMHMPVPDPATMMAHARYRDVVAEVKAFLEAQARRALSAGVPQVVLDPGFGFGKLLE 207 (294)
T ss_dssp ECSSCSCCHHHHHHHHHHTCEEEEECCSSSCTTTGGGGCCCSSHHHHHHHHHHHHHHHHHHTTCSCEEEECCTTSSCCHH
T ss_pred EECCCCCChHHHHHHHHhCCCEEEEcCCCCCCccccccCccccHHHHHHHHHHHHHHHHHHCCCCcEEEcCCCCcccCHH
Confidence 1113444455555555544444333 11111111000 000 34455667778889996 33333346788888
Q ss_pred HHHHHHHHHhcC
Q 022946 249 DRVGLLHTLATL 260 (289)
Q Consensus 249 d~~~~l~~l~~l 260 (289)
+-.++++.+..+
T Consensus 208 ~n~~ll~~l~~~ 219 (294)
T 2dqw_A 208 HNLALLRRLDEI 219 (294)
T ss_dssp HHHHHHHTHHHH
T ss_pred HHHHHHHHHHHH
Confidence 766666666543
|
| >1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ... | Back alignment and structure |
|---|
Probab=95.50 E-value=0.62 Score=39.63 Aligned_cols=137 Identities=12% Similarity=0.191 Sum_probs=87.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC----chhHHHHHHHHHHHHh-cCceEEEeCCCCCHHHHHHHHHcCCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR----KTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge----~~~~~~l~e~i~~ik~-~~~~i~~~~g~l~~e~l~~L~~aG~~ 196 (289)
.+.+.+++.++...+.|.+-|-+++....|+.. ....++++..++.+++ .++.+.+ .+.+.+.+++-.++|.+
T Consensus 60 ~~~~~a~~~a~~~v~~GAdiIDIGgeStrPga~~v~~~eE~~RvvpvI~~l~~~~~vpiSI--DT~~~~V~~aAl~aGa~ 137 (297)
T 1tx2_A 60 NEVDAAVRHAKEMRDEGAHIIDIGGESTRPGFAKVSVEEEIKRVVPMIQAVSKEVKLPISI--DTYKAEVAKQAIEAGAH 137 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEESCC----CCCCCHHHHHHHHHHHHHHHHHHSCSCEEE--ECSCHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEE--eCCCHHHHHHHHHcCCC
Confidence 578999999999999999999887643333222 3456777877788774 3555433 34567777777777877
Q ss_pred eEe-cCCCch-HHHHhcc---C--------CC-CC--------HHHHHHHHHHHHHcCCc---eeecEEeecCCCHHHHH
Q 022946 197 AYN-HNLDTS-REFYSKI---I--------TT-RS--------YDERLETLKHVREAGIN---VCSGGIIGLGEAEEDRV 251 (289)
Q Consensus 197 ~v~-i~let~-~~~~~~i---~--------~~-~~--------~~~~~~~i~~~~~~Gi~---v~~~~i~Glget~ed~~ 251 (289)
-|+ ++.... +++.+.+ . ++ .. .+...+.++.+.++|++ +..+--+|++.+.++-.
T Consensus 138 iINdvsg~~~d~~m~~~aa~~g~~vVlmh~~G~p~y~d~v~ev~~~l~~~i~~a~~~GI~~~~IilDPg~Gfgk~~~~n~ 217 (297)
T 1tx2_A 138 IINDIWGAKAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDSIKIAKDAGVRDENIILDPGIGFAKTPEQNL 217 (297)
T ss_dssp EEEETTTTSSCTHHHHHHHHHTCCEEEECCCSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHhCCcEEEEeCCCCCCcchHHHHHHHHHHHHHHHHHHcCCChhcEEEeCCCCcCCCHHHHH
Confidence 775 444332 3332211 1 00 01 24455677778889996 66666667788888777
Q ss_pred HHHHHHhcC
Q 022946 252 GLLHTLATL 260 (289)
Q Consensus 252 ~~l~~l~~l 260 (289)
++++.+..+
T Consensus 218 ~ll~~l~~l 226 (297)
T 1tx2_A 218 EAMRNLEQL 226 (297)
T ss_dssp HHHHTGGGG
T ss_pred HHHHHHHHH
Confidence 777776655
|
| >2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.17 Score=45.93 Aligned_cols=135 Identities=13% Similarity=0.120 Sum_probs=83.6
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCC-----CCCCchhHHHHHHHHHHHHhcCceEEEe----CCCC------CHH
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRD-----TIGRKTNFNQILEYVKDIRDMGMEVCCT----LGML------EKH 185 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~-----~~ge~~~~~~l~e~i~~ik~~~~~i~~~----~g~l------~~e 185 (289)
.++.++.++.++.+.+.|+..|-.+++..+ ..+ +..++.+..+.+.++...+...+. .|.- .++
T Consensus 26 ~~~~~dkl~Ia~~L~~~Gv~~IE~g~~atF~~~~r~~~-~d~~e~l~~i~~~~~~~~l~~l~R~~N~~G~~~~~ddv~~~ 104 (464)
T 2nx9_A 26 RLRIDDMLPIAQQLDQIGYWSLECWGGATFDSCIRFLG-EDPWQRLRLLKQAMPNTPLQMLLRGQNLLGYRHYADDVVDT 104 (464)
T ss_dssp CCCGGGTGGGHHHHHTSCCSEEEEEETTHHHHHHHTTC-CCHHHHHHHHHHHCSSSCEEEEECGGGTTSSSCCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCcCccccchhhccC-CCHHHHHHHHHHhCCCCeEEEEeccccccCcccccchhhHH
Confidence 378888899999999999999988653210 011 223333333332222223333332 1321 145
Q ss_pred HHHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecE--EeecCCCHHHHHHHHHHHhcCCCC
Q 022946 186 QAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGG--IIGLGEAEEDRVGLLHTLATLPTH 263 (289)
Q Consensus 186 ~l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~--i~Glget~ed~~~~l~~l~~l~~~ 263 (289)
.++...++|++.|.+..-+. ..+.+.+.++.+++.|..+...+ ..|...+.+.+.+.++.+.++ +
T Consensus 105 ~v~~a~~~Gvd~i~if~~~s-----------d~~ni~~~i~~ak~~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~--G 171 (464)
T 2nx9_A 105 FVERAVKNGMDVFRVFDAMN-----------DVRNMQQALQAVKKMGAHAQGTLCYTTSPVHNLQTWVDVAQQLAEL--G 171 (464)
T ss_dssp HHHHHHHTTCCEEEECCTTC-----------CTHHHHHHHHHHHHTTCEEEEEEECCCCTTCCHHHHHHHHHHHHHT--T
T ss_pred HHHHHHhCCcCEEEEEEecC-----------HHHHHHHHHHHHHHCCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHC--C
Confidence 67888899999888754322 22556788888888888765544 345456778888888888888 4
Q ss_pred CCeeee
Q 022946 264 PESVPI 269 (289)
Q Consensus 264 ~~~v~i 269 (289)
.+.+.+
T Consensus 172 ad~I~l 177 (464)
T 2nx9_A 172 VDSIAL 177 (464)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 666554
|
| >1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.1 Score=48.29 Aligned_cols=135 Identities=12% Similarity=0.103 Sum_probs=84.2
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCC-----CCCCchhHHHHHHHHHHHHhcCceEEEe--C--CC------CCHH
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRD-----TIGRKTNFNQILEYVKDIRDMGMEVCCT--L--GM------LEKH 185 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~-----~~ge~~~~~~l~e~i~~ik~~~~~i~~~--~--g~------l~~e 185 (289)
.++.++.++.++.+.+.|+..|-++++..+ ..+ +..++.+..+.+.++...+...+. | |. +.+.
T Consensus 43 ~~~tedKl~Ia~~L~~~Gv~~IE~G~patF~~~~rfl~-~d~~e~lr~l~~~~~~~~l~~L~R~~N~~G~~~ypddv~~~ 121 (539)
T 1rqb_A 43 RMAMEDMVGACADIDAAGYWSVECWGGATYDSCIRFLN-EDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYNDEVVDR 121 (539)
T ss_dssp CCCGGGTGGGHHHHHHTTCSEEEEEETTHHHHHHHTSC-CCHHHHHHHHHHHCTTSCEEEEECGGGTTSSSCCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCcccccccchhccC-CCHHHHHHHHHHhCCCCEEEEEeccccccCcccCcccccHH
Confidence 378899999999999999999988763210 011 233343333333333233333332 1 32 1355
Q ss_pred HHHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecE--EeecCCCHHHHHHHHHHHhcCCCC
Q 022946 186 QAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGG--IIGLGEAEEDRVGLLHTLATLPTH 263 (289)
Q Consensus 186 ~l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~--i~Glget~ed~~~~l~~l~~l~~~ 263 (289)
.++...++|++.|.+..-+. ..+.+.+.++.+++.|..+...+ ..|...+.+.+.+.++.+.++ +
T Consensus 122 ~ve~a~~aGvd~vrIf~s~s-----------d~~ni~~~i~~ak~~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~--G 188 (539)
T 1rqb_A 122 FVDKSAENGMDVFRVFDAMN-----------DPRNMAHAMAAVKKAGKHAQGTICYTISPVHTVEGYVKLAGQLLDM--G 188 (539)
T ss_dssp HHHHHHHTTCCEEEECCTTC-----------CTHHHHHHHHHHHHTTCEEEEEEECCCSTTCCHHHHHHHHHHHHHT--T
T ss_pred HHHHHHhCCCCEEEEEEehh-----------HHHHHHHHHHHHHHCCCeEEEEEEeeeCCCCCHHHHHHHHHHHHHc--C
Confidence 68889999999888754332 22556788888888888765444 334456778888888888887 4
Q ss_pred CCeeee
Q 022946 264 PESVPI 269 (289)
Q Consensus 264 ~~~v~i 269 (289)
++.+.+
T Consensus 189 ad~I~L 194 (539)
T 1rqb_A 189 ADSIAL 194 (539)
T ss_dssp CSEEEE
T ss_pred CCEEEe
Confidence 565544
|
| >2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=1.1 Score=38.46 Aligned_cols=138 Identities=18% Similarity=0.232 Sum_probs=83.2
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC----chhHHHHHHHHHHHHh-cCceEEEeCCCCCHHHHHHHHHcCC
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR----KTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGL 195 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge----~~~~~~l~e~i~~ik~-~~~~i~~~~g~l~~e~l~~L~~aG~ 195 (289)
+.+.+.+++.++.+.+.|.+-|-++|....|+.+ ....++++..|+.+++ .++.+ +..+...+++++-.++|.
T Consensus 29 ~~~~~~a~~~a~~~v~~GAdIIDIGgeSTrPGa~~v~~~eE~~Rv~pvI~~l~~~~~vpi--SIDT~~~~Va~aAl~aGa 106 (314)
T 2vef_A 29 FFALEQALQQARKLIAEGASMLDIGGESTRPGSSYVEIEEEIQRVVPVIKAIRKESDVLI--SIDTWKSQVAEAALAAGA 106 (314)
T ss_dssp -CHHHHHHHHHHHHHHTTCSEEEEECCC-----CHHHHHHHHHHHHHHHHHHHHHCCCEE--EEECSCHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCceE--EEeCCCHHHHHHHHHcCC
Confidence 3588999999999999999988887733223211 1567888888888874 35544 334566777777777777
Q ss_pred CeEe-cCCCch-HHHHh---ccC-------C-----CCC---------------------------HHH-----HHHHHH
Q 022946 196 TAYN-HNLDTS-REFYS---KII-------T-----TRS---------------------------YDE-----RLETLK 226 (289)
Q Consensus 196 ~~v~-i~let~-~~~~~---~i~-------~-----~~~---------------------------~~~-----~~~~i~ 226 (289)
+-|+ ++-... +++.+ +.. . +.+ .++ ..+.++
T Consensus 107 ~iINDVsg~~~d~~m~~v~a~~~~~vvlmh~~~~g~p~~~~~~~~~~~~~g~~~~~~~~~~y~d~~v~e~v~~~l~~~i~ 186 (314)
T 2vef_A 107 DLVNDITGLMGDEKMPHVVAEARAQVVIMFNPVMARPQHPSSLIFPHFGFGQAFTEEELADFETLPIEELMEAFFERALA 186 (314)
T ss_dssp CEEEETTTTCSCTTHHHHHHHHTCEEEEECCHHHHCTTSTTTTTSCCCCC--CCCC--CHHHHHSCHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCChHHHHHHHHcCCCEEEEecCCCCCCCCcccccccccccccccccccccccccchHHHHHHHHHHHHHH
Confidence 7776 443221 22111 110 0 001 222 234567
Q ss_pred HHHHcCCc---eeecEEeecCCCHHHHHHHHHHHhcC
Q 022946 227 HVREAGIN---VCSGGIIGLGEAEEDRVGLLHTLATL 260 (289)
Q Consensus 227 ~~~~~Gi~---v~~~~i~Glget~ed~~~~l~~l~~l 260 (289)
.+.++|+. +..+--+|++-|.++-.+++..+..+
T Consensus 187 ~a~~~GI~~~~IilDPGiGF~kt~~~nl~ll~~l~~l 223 (314)
T 2vef_A 187 RAAEAGIAPENILLDPGIGFGLTKKENLLLLRDLDKL 223 (314)
T ss_dssp HHHHHTCCGGGEEEECCTTSSCCHHHHHHHHHTHHHH
T ss_pred HHHHcCCChhhEEEeCCCCcccchHHHHHHHHHHHHh
Confidence 78889993 55555567778887666666665543
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=2 Score=35.94 Aligned_cols=115 Identities=14% Similarity=0.169 Sum_probs=75.2
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCchH
Q 022946 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSR 206 (289)
Q Consensus 128 ~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~~ 206 (289)
.+.++.+.+.|+..+.+.+. +.++..-.+.++.++ ..++.+......+++.++++.+.+|.|.|.++....
T Consensus 75 ~~~A~~y~~~GA~~isvltd-------~~~f~Gs~~~l~~ir~~v~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~l- 146 (272)
T 3qja_A 75 AKLAQAYQDGGARIVSVVTE-------QRRFQGSLDDLDAVRASVSIPVLRKDFVVQPYQIHEARAHGADMLLLIVAAL- 146 (272)
T ss_dssp HHHHHHHHHTTCSEEEEECC-------GGGHHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGGS-
T ss_pred HHHHHHHHHcCCCEEEEecC-------hhhcCCCHHHHHHHHHhCCCCEEECccccCHHHHHHHHHcCCCEEEEecccC-
Confidence 44455666789999987652 335555556666666 457777766777888889999999999999865432
Q ss_pred HHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeecc
Q 022946 207 EFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINA 271 (289)
Q Consensus 207 ~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~ 271 (289)
+.++..+.++.+++.|+.+ ++. -.|.+++...+ ++ +.+.++++.
T Consensus 147 ----------~~~~l~~l~~~a~~lGl~~----lve-v~t~ee~~~A~----~~--Gad~IGv~~ 190 (272)
T 3qja_A 147 ----------EQSVLVSMLDRTESLGMTA----LVE-VHTEQEADRAL----KA--GAKVIGVNA 190 (272)
T ss_dssp ----------CHHHHHHHHHHHHHTTCEE----EEE-ESSHHHHHHHH----HH--TCSEEEEES
T ss_pred ----------CHHHHHHHHHHHHHCCCcE----EEE-cCCHHHHHHHH----HC--CCCEEEECC
Confidence 2345566677777788765 222 24555544332 34 467777764
|
| >2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=94.25 E-value=0.33 Score=41.74 Aligned_cols=138 Identities=16% Similarity=0.156 Sum_probs=76.5
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCC---CCchhHHHHHHHHHHHHhc--CceEEEeCCCCCHHHHHHHHHcCC
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI---GRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGL 195 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~---ge~~~~~~l~e~i~~ik~~--~~~i~~~~g~l~~e~l~~L~~aG~ 195 (289)
+.+.+.+++.++.+.+.|.+-|-++|....++ .+....++++..++.+++. ++.+ +..+...+++++-.++|.
T Consensus 61 ~~~~~~a~~~A~~~v~~GAdIIDIGgeSTrPG~~v~~~eEl~Rv~pvI~~l~~~~~~vpI--SIDT~~~~VaeaAl~aGa 138 (318)
T 2vp8_A 61 TFSDAAARDAVHRAVADGADVIDVGGVKAGPGERVDVDTEITRLVPFIEWLRGAYPDQLI--SVDTWRAQVAKAACAAGA 138 (318)
T ss_dssp ---CHHHHHHHHHHHHTTCSEEEEC----------CHHHHHHHHHHHHHHHHHHSTTCEE--EEECSCHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCeE--EEeCCCHHHHHHHHHhCC
Confidence 35789999999999999999888876322221 2235667787888888743 5444 334455666666666666
Q ss_pred CeEe-cCCCchHHHHhc----------cC-CC---C------CH------------HHHHHHHHHHHHcCCc---eeecE
Q 022946 196 TAYN-HNLDTSREFYSK----------II-TT---R------SY------------DERLETLKHVREAGIN---VCSGG 239 (289)
Q Consensus 196 ~~v~-i~let~~~~~~~----------i~-~~---~------~~------------~~~~~~i~~~~~~Gi~---v~~~~ 239 (289)
+-|+ ++-...+++++. ++ ++ . .| +...+.++.+.++|+. +..+-
T Consensus 139 ~iINDVsg~~d~~m~~vaa~~g~~vVlmh~~G~~p~tmq~~~~y~~~~~dv~~ev~~~l~~~i~~a~~aGI~~~~IilDP 218 (318)
T 2vp8_A 139 DLINDTWGGVDPAMPEVAAEFGAGLVCAHTGGALPRTRPFRVSYGTTTRGVVDAVISQVTAAAERAVAAGVAREKVLIDP 218 (318)
T ss_dssp CEEEETTSSSSTTHHHHHHHHTCEEEEECC-------------CCSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEET
T ss_pred CEEEECCCCCchHHHHHHHHhCCCEEEECCCCCCccccccccccccccccHHHHHHHHHHHHHHHHHHcCCChhhEEEcC
Confidence 6554 322111121111 00 00 0 11 3344557778889995 65555
Q ss_pred EeecCCCHHHHHHHHHHHhcC
Q 022946 240 IIGLGEAEEDRVGLLHTLATL 260 (289)
Q Consensus 240 i~Glget~ed~~~~l~~l~~l 260 (289)
-+|++.+.++-.++++.+..+
T Consensus 219 G~GF~Kt~~~nl~ll~~l~~l 239 (318)
T 2vp8_A 219 AHDFGKNTFHGLLLLRHVADL 239 (318)
T ss_dssp TTTCCTTSHHHHHHHHTHHHH
T ss_pred CCCcccCHHHHHHHHHHHHHH
Confidence 667766776666666655543
|
| >1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A* | Back alignment and structure |
|---|
Probab=94.06 E-value=0.23 Score=40.57 Aligned_cols=118 Identities=11% Similarity=0.150 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHcCCcEEEEec---------ccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCC
Q 022946 125 DAVMQAAQKAKEAGSTRFCMGA---------AWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGL 195 (289)
Q Consensus 125 eei~~~~~~~~~~g~~~i~i~~---------~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~ 195 (289)
+++++.+... ....+|++- +|-+. ....+.+.++++.+++.|+.+..... -+.+.++.-++.|.
T Consensus 77 ~emi~ia~~~---kP~~vtLVPE~r~e~TTegGldv---~~~~~~l~~~i~~L~~~GIrVSLFID-pd~~qi~aA~~~GA 149 (243)
T 1m5w_A 77 EEMLAIAVET---KPHFCCLVPEKRQEVTTEGGLDV---AGQRDKMRDACKRLADAGIQVSLFID-ADEEQIKAAAEVGA 149 (243)
T ss_dssp HHHHHHHHHH---CCSEEEECCCCSSCSSCCSCCCS---GGGHHHHHHHHHHHHHTTCEEEEEEC-SCHHHHHHHHHTTC
T ss_pred HHHHHHHHHc---CCCEEEECCCCCCCcCCCcchhH---HhhHHHHHHHHHHHHHCCCEEEEEeC-CCHHHHHHHHHhCc
Confidence 5666665544 456777752 11111 24779999999999999998866654 57899999999999
Q ss_pred CeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHH
Q 022946 196 TAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGL 253 (289)
Q Consensus 196 ~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~ 253 (289)
++|.+--..+.+.+........++.+.++.+.+++.|+.|+ .|+|=+.+.+...
T Consensus 150 ~~IELhTG~Ya~a~~~~~~~~el~~i~~aa~~A~~lGL~Vn----AGHgL~y~Nv~~i 203 (243)
T 1m5w_A 150 PFIEIHTGCYADAKTDAEQAQELARIAKAATFAASLGLKVN----AGHGLTYHNVKAI 203 (243)
T ss_dssp SEEEEECHHHHHCCSHHHHHHHHHHHHHHHHHHHHTTCEEE----EESSCCTTTHHHH
T ss_pred CEEEEechhhhcCCCchhHHHHHHHHHHHHHHHHHcCCEEe----cCCCCCHHHHHHH
Confidence 99987665542111110011256778888888999999886 4666666555443
|
| >2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05 2, protein structure initiative, midwest center for structu genomics; 2.15A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.26 Score=43.27 Aligned_cols=145 Identities=10% Similarity=-0.002 Sum_probs=85.5
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCC-chhHHHHHHHHHHHHhcCceEEEe--CCC-----CCHHHHHHHHHcC
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR-KTNFNQILEYVKDIRDMGMEVCCT--LGM-----LEKHQAIELKKAG 194 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge-~~~~~~l~e~i~~ik~~~~~i~~~--~g~-----l~~e~l~~L~~aG 194 (289)
+.++..+.++.+.++|+++|+.+-. .+-+. ....+.+.++++..++.|+++.+. +.. .+.+.+..|++.|
T Consensus 15 ~~~~~~~yi~~a~~~Gf~~IFTSL~--~~e~~~~~~~~~~~~l~~~a~~~g~~vi~DIsp~~l~~Lg~s~~dl~~~~~lG 92 (372)
T 2p0o_A 15 ITNDTIIYIKKMKALGFDGIFTSLH--IPEDDTSLYRQRLTDLGAIAKAEKMKIMVDISGEALKRAGFSFDELEPLIELG 92 (372)
T ss_dssp CCHHHHHHHHHHHHTTCCEEEEEEC--CC-----CHHHHHHHHHHHHHHHTCEEEEEECHHHHHTTTCBTTBCHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCCEEEccCC--ccCCChHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCHHHHHHHHHcC
Confidence 3466678888899999999855432 11111 245688888888888889887543 111 3446678999999
Q ss_pred CCeEec--CCCch-H-HHHhccCC--CC-C-HHHHHHHHHHHHHcCCc-----eeecEEe--ecCCCHHHHHHHHHHHhc
Q 022946 195 LTAYNH--NLDTS-R-EFYSKIIT--TR-S-YDERLETLKHVREAGIN-----VCSGGII--GLGEAEEDRVGLLHTLAT 259 (289)
Q Consensus 195 ~~~v~i--~let~-~-~~~~~i~~--~~-~-~~~~~~~i~~~~~~Gi~-----v~~~~i~--Glget~ed~~~~l~~l~~ 259 (289)
++.+-+ |+... . .+-..+.- .. + ..+ -+..+.+.|.. .+.++-. ..|=+.+.+.+.-+++++
T Consensus 93 i~glRLD~Gf~~~eia~ls~nlkIeLNASti~~~---~l~~l~~~~~n~~~l~a~HNFYPr~~TGLs~~~f~~~n~~~k~ 169 (372)
T 2p0o_A 93 VTGLRMDYGITIEQMAHASHKIDIGLNASTITLE---EVAELKAHQADFSRLEAWHNYYPRPETGIGTTFFNEKNRWLKE 169 (372)
T ss_dssp CCEEEECSSCCHHHHHHHHTTSEEEEETTTCCHH---HHHHHHHTTCCGGGEEEECCCCCSTTCSBCHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCHHHHHHHhcCCEEEEECccCCHH---HHHHHHHcCCChHHeEEeeccCCCCCCCCCHHHHHHHHHHHHH
Confidence 998775 55443 1 11111110 11 2 122 23334444432 3334433 115677888888888988
Q ss_pred CCCCCCeeeeccceecCC
Q 022946 260 LPTHPESVPINALLAVKG 277 (289)
Q Consensus 260 l~~~~~~v~i~~~~p~pg 277 (289)
. + +.+..|+|-.+
T Consensus 170 ~--G---i~t~AFI~g~~ 182 (372)
T 2p0o_A 170 L--G---LQVFTFVPGDG 182 (372)
T ss_dssp T--T---CEEEEEECCSS
T ss_pred C--C---CcEEEEecCCC
Confidence 8 3 55678887653
|
| >3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=93.84 E-value=0.24 Score=41.06 Aligned_cols=116 Identities=13% Similarity=0.172 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHcCCcEEEEec----------ccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHc
Q 022946 124 KDAVMQAAQKAKEAGSTRFCMGA----------AWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKA 193 (289)
Q Consensus 124 ~eei~~~~~~~~~~g~~~i~i~~----------~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~a 193 (289)
.+++++.+.+. ....+|++- |+ +. ....+.+.++++.++..|+++..... -+.+.++.-++.
T Consensus 104 t~emi~ial~~---kP~~vtLVPEkreE~TTegGl-Dv---~~~~~~L~~~i~~L~~~GIrVSLFID-pd~~qI~aA~~~ 175 (278)
T 3gk0_A 104 TPEMLDIACEI---RPHDACLVPEKRSELTTEGGL-DV---VGHFDAVRAACKQLADAGVRVSLFID-PDEAQIRAAHET 175 (278)
T ss_dssp SHHHHHHHHHH---CCSEEEECCCSGGGBCSSSSB-CT---TTTHHHHHHHHHHHHHTTCEEEEEEC-SCHHHHHHHHHH
T ss_pred CHHHHHHHHHc---CCCEEEECCCCCCCcCCCcch-hh---hccHHHHHHHHHHHHHCCCEEEEEeC-CCHHHHHHHHHh
Confidence 46777665544 456777752 22 11 23678999999999999998765553 568899999999
Q ss_pred CCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHH
Q 022946 194 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRV 251 (289)
Q Consensus 194 G~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~ 251 (289)
|.++|.+--..+.+.+..-.....++.+.++.+.+++.|+.|+ .|.|=+.+.+.
T Consensus 176 GAd~IELhTG~YA~a~~~~~~~~el~rl~~aA~~A~~lGL~Vn----AGHGL~y~Nv~ 229 (278)
T 3gk0_A 176 GAPVIELHTGRYADAHDAAEQQREFERIATGVDAGIALGLKVN----AGHGLHYTNVQ 229 (278)
T ss_dssp TCSEEEECCHHHHTCSSHHHHHHHHHHHHHHHHHHHHTTCEEE----ECTTCCTTTHH
T ss_pred CcCEEEEecchhhccCCchhHHHHHHHHHHHHHHHHHcCCEEe----cCCCCCHHHHH
Confidence 9999988554331111100011246778888888899999886 45655555544
|
| >2bmb_A Folic acid synthesis protein FOL1; folate biosynthesis, transferase, ligase, multifunctional enzyme; HET: PMM; 2.3A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.84 E-value=2.3 Score=39.24 Aligned_cols=138 Identities=13% Similarity=0.172 Sum_probs=85.9
Q ss_pred CHHHHHHHHHHHHHcC-----CcEEEEecccCCCC----CCchhHHHHHHHHHHHHhc----CceEEEeCCCCCHHHHHH
Q 022946 123 TKDAVMQAAQKAKEAG-----STRFCMGAAWRDTI----GRKTNFNQILEYVKDIRDM----GMEVCCTLGMLEKHQAIE 189 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g-----~~~i~i~~~~~~~~----ge~~~~~~l~e~i~~ik~~----~~~i~~~~g~l~~e~l~~ 189 (289)
+.+.+++.++.+.+.| ++-|-++|-..-|+ .+...+++++..|+.+++. ...+.++..+...+++++
T Consensus 247 ~~~~al~~a~~mv~~G~~~~~AdIIDIGgeSTRPGa~~vs~eEEl~RvvpvI~~i~~~~~~~~~~vpISIDT~~a~Vaea 326 (545)
T 2bmb_A 247 DIESQLNDIIKLCKDALYLHESVIIDVGGCSTRPNSIQASEEEEIRRSIPLIKAIRESTELPQDKVILSIDTYRSNVAKE 326 (545)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSCEEEEEECSCCSTTCCCCCHHHHHHHHHHHHHHHHHCSSSCGGGEEEEEECCCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCCCceEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCeEEEeCCcHHHHHH
Confidence 8899999999999999 88887776333232 2235678888888888741 113334445566677766
Q ss_pred HHHcCCCeEe-cCCCch-HHHH---hcc-C--------C--CC------CH-----------------------------
Q 022946 190 LKKAGLTAYN-HNLDTS-REFY---SKI-I--------T--TR------SY----------------------------- 218 (289)
Q Consensus 190 L~~aG~~~v~-i~let~-~~~~---~~i-~--------~--~~------~~----------------------------- 218 (289)
-.++|.+-|+ ++.... ++++ .+. . + +. .|
T Consensus 327 Al~aGadIINDVsg~~~d~~m~~vva~~~~~~vVlmH~rG~p~tm~~~~~y~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 406 (545)
T 2bmb_A 327 AIKVGVDIINDISGGLFDSNMFAVIAENPEICYILSHTRGDISTMNRLAHYENFALGDSIQQEFVHNTDIQQLDDLKDKT 406 (545)
T ss_dssp HHHTTCCEEEETTTTSSCTTHHHHHHTCTTSEEEEECCCSCTTTGGGCCCCSSCTTTTTEEEEEETTEEGGGSTTHHHHC
T ss_pred HHHcCCCEEEeCCCCcCChHHHHHHHHhCCCeEEEECCCCCCCCccccccccccccccccchhccccccccccccccccc
Confidence 6666777665 443222 2221 111 0 0 00 01
Q ss_pred -------HHHHHHHHHHHHcCCc---eeecEEeecCCCHHHHHHHHHHHhcC
Q 022946 219 -------DERLETLKHVREAGIN---VCSGGIIGLGEAEEDRVGLLHTLATL 260 (289)
Q Consensus 219 -------~~~~~~i~~~~~~Gi~---v~~~~i~Glget~ed~~~~l~~l~~l 260 (289)
+...+.++.+.++|+. +..+--+|++.|.++-.++++.+..+
T Consensus 407 ~vv~~v~~~l~~~i~~a~~~GI~~~~IilDPGiGF~Kt~~~nl~lL~~l~~l 458 (545)
T 2bmb_A 407 VLIRNVGQEIGERYIKAIDNGVKRWQILIDPGLGFAKTWKQNLQIIRHIPIL 458 (545)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHHTHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCCCCcccChHHHHHHHHHHHHH
Confidence 1223467778889995 66666778888888777777777666
|
| >2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X* | Back alignment and structure |
|---|
Probab=93.44 E-value=1 Score=37.74 Aligned_cols=133 Identities=16% Similarity=0.183 Sum_probs=88.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-cCceEEEeCCCCCHHHHHHHHHc--CCCeE
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKA--GLTAY 198 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~~~~i~~~~g~l~~e~l~~L~~a--G~~~v 198 (289)
.+.+.+++.++...+.|.+-+-+++.. ......+++...++.+++ .++.+.+ .+.+.+++++-.++ |.+-|
T Consensus 31 ~~~~~a~~~a~~~v~~GAdiIDIg~~s----~~~eE~~rv~~vi~~l~~~~~~pisI--DT~~~~v~~aal~a~~Ga~iI 104 (271)
T 2yci_X 31 KDPRPIQEWARRQAEKGAHYLDVNTGP----TADDPVRVMEWLVKTIQEVVDLPCCL--DSTNPDAIEAGLKVHRGHAMI 104 (271)
T ss_dssp TCCHHHHHHHHHHHHTTCSEEEEECCS----CSSCHHHHHHHHHHHHHHHCCCCEEE--ECSCHHHHHHHHHHCCSCCEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEcCCc----CchhHHHHHHHHHHHHHHhCCCeEEE--eCCCHHHHHHHHHhCCCCCEE
Confidence 467999999999999999998887643 223467888888888874 3555433 34578888777777 88877
Q ss_pred e-cCCCch--HHHHhcc----------CC-----CCC----HHHHHHHHHHHHHcCCc---eeecEEeec-CCCHHHHHH
Q 022946 199 N-HNLDTS--REFYSKI----------IT-----TRS----YDERLETLKHVREAGIN---VCSGGIIGL-GEAEEDRVG 252 (289)
Q Consensus 199 ~-i~let~--~~~~~~i----------~~-----~~~----~~~~~~~i~~~~~~Gi~---v~~~~i~Gl-get~ed~~~ 252 (289)
+ ++.+.- +++.+.. +. +.+ .+...+.++.+.++|++ +..+-.+|+ |-+.++-.+
T Consensus 105 Ndvs~~~d~~~~~~~~~a~~~~~vv~m~~d~~G~p~t~~~~~~~l~~~~~~a~~~Gi~~~~IilDPg~gfigk~~~~~~~ 184 (271)
T 2yci_X 105 NSTSADQWKMDIFFPMAKKYEAAIIGLTMNEKGVPKDANDRSQLAMELVANADAHGIPMTELYIDPLILPVNVAQEHAVE 184 (271)
T ss_dssp EEECSCHHHHHHHHHHHHHHTCEEEEESCBTTBCCCSHHHHHHHHHHHHHHHHHTTCCGGGEEEECCCCCTTTSTHHHHH
T ss_pred EECCCCccccHHHHHHHHHcCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHCCCCcccEEEecCCCccccCHHHHHH
Confidence 6 655431 3332211 11 123 34445566677889996 777777788 777776666
Q ss_pred HHHHHhcC
Q 022946 253 LLHTLATL 260 (289)
Q Consensus 253 ~l~~l~~l 260 (289)
+++.++.+
T Consensus 185 ~l~~l~~~ 192 (271)
T 2yci_X 185 VLETIRQI 192 (271)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665554
|
| >3mcm_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate...; folate, TIM barrel, synthase, HPPK, DHPS; 2.20A {Francisella tularensis subsp} PDB: 3mcn_A* 3mco_A* | Back alignment and structure |
|---|
Probab=92.41 E-value=0.66 Score=41.70 Aligned_cols=136 Identities=11% Similarity=0.092 Sum_probs=74.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCC----CchhHHHHHHHHHHHHh---c-CceEEEeCCCCCHHHHHHHHH-
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG----RKTNFNQILEYVKDIRD---M-GMEVCCTLGMLEKHQAIELKK- 192 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~g----e~~~~~~l~e~i~~ik~---~-~~~i~~~~g~l~~e~l~~L~~- 192 (289)
.+.+++++.++...+.|++-|-++|...-++. +....++++..++.+++ . ...+-++..+...+++++-.+
T Consensus 209 ~~~~~al~~A~~mv~~GAdIIDIGgeSTrPGa~~Vs~~EE~~Rv~pvI~~l~~~~~~~~~~vpISIDT~~~~VaeaAL~~ 288 (442)
T 3mcm_A 209 FDDNQRKLNLDELIQSGAEIIDIGAESTKPDAKPISIEEEFNKLNEFLEYFKSQLANLIYKPLVSIDTRKLEVMQKILAK 288 (442)
T ss_dssp SCCCHHHHHHHHHHHHTCSEEEEECCCCCC----CCHHHHHHHHHHHHHHHHHHTTTCSSCCEEEEECCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCeEEEeCCCHHHHHHHHhh
Confidence 46788999999999999998888763333321 23466778888888875 1 123334455677888877777
Q ss_pred -cCCCe-Ee-cCCCchHHHHhccC-----------CC--C-------------CHHHHHHHHHHHHHcCCc---eeecEE
Q 022946 193 -AGLTA-YN-HNLDTSREFYSKII-----------TT--R-------------SYDERLETLKHVREAGIN---VCSGGI 240 (289)
Q Consensus 193 -aG~~~-v~-i~let~~~~~~~i~-----------~~--~-------------~~~~~~~~i~~~~~~Gi~---v~~~~i 240 (289)
+|.+- |+ ++....+++++.+. ++ . -.+...+.++.+.++|+. +..+--
T Consensus 289 ~aGa~i~INDVsg~~d~~m~~v~a~~g~~vVlMh~~G~P~tmq~~~y~dvv~ev~~~l~~~i~~a~~aGI~~~~IilDPG 368 (442)
T 3mcm_A 289 HHDIIWMINDVECNNIEQKAQLIAKYNKKYVIIHNLGITDRNQYLDKENAIDNVCDYIEQKKQILLKHGIAQQNIYFDIG 368 (442)
T ss_dssp HGGGCCEEEECCCTTHHHHHHHHHHHTCEEEEECC----------------CTHHHHHHHHHHHHHHHTCCGGGEEEECC
T ss_pred CCCCCEEEEcCCCCCChHHHHHHHHhCCeEEEECCCCCCccccccCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCC
Confidence 78776 54 44422144433221 01 0 133445677888999993 555555
Q ss_pred eecCCCHHHHHHHHHHH
Q 022946 241 IGLGEAEEDRVGLLHTL 257 (289)
Q Consensus 241 ~Glget~ed~~~~l~~l 257 (289)
+|++.|.++-.++++.+
T Consensus 369 iGF~Kt~~~nl~lL~~l 385 (442)
T 3mcm_A 369 FGFGKKSDTARYLLENI 385 (442)
T ss_dssp CC------------CCH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 67766666544444443
|
| >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A | Back alignment and structure |
|---|
Probab=92.37 E-value=1.3 Score=42.35 Aligned_cols=133 Identities=10% Similarity=-0.007 Sum_probs=77.9
Q ss_pred CCHHHHHHHHHHHHHc--CCcEEEEecccC-----CCCCCchhHHHHHHHHHHHHhcCceEEEe----CCC--C----CH
Q 022946 122 MTKDAVMQAAQKAKEA--GSTRFCMGAAWR-----DTIGRKTNFNQILEYVKDIRDMGMEVCCT----LGM--L----EK 184 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~--g~~~i~i~~~~~-----~~~ge~~~~~~l~e~i~~ik~~~~~i~~~----~g~--l----~~ 184 (289)
++.++.++.++.+.+. |+..|-++|+.. .+.+ ...++.+.++.+.+++..+..... .|+ + ..
T Consensus 122 ~~~edkl~Ia~~Ld~~Gvg~~~IE~gGGatfd~~~~f~~-e~p~e~l~~l~~~~~~~~l~~l~R~~n~vgy~~~p~~~~~ 200 (718)
T 3bg3_A 122 VRTHDLKKIAPYVAHNFSKLFSMENWGGATFDVAMRFLY-ECPWRRLQELRELIPNIPFQMLLRGANAVGYTNYPDNVVF 200 (718)
T ss_dssp CCHHHHHHHHHHHHHHCTTCSEEEEEETTHHHHHHHTSC-CCHHHHHHHHHHHCSSSCEEEEECGGGTTSSSCCCHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEecCCcchhhccccCC-CCHHHHHHHHHHHcccchHHHHhcccccccccccCCcchH
Confidence 7899999999999887 577787764322 0222 234555555555554433333332 121 1 24
Q ss_pred HHHHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEee------c--CCCHHHHHHHHHH
Q 022946 185 HQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIG------L--GEAEEDRVGLLHT 256 (289)
Q Consensus 185 e~l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~G------l--get~ed~~~~l~~ 256 (289)
+.++...++|++.+.+..-. ...+.....++.+++.|..+...+.+. . ..+.+.+.+.++.
T Consensus 201 ~~i~~a~~~Gvd~irIf~s~-----------n~l~~l~~~i~~ak~~G~~v~~~i~~~~d~~dp~r~~~~~e~~~~~a~~ 269 (718)
T 3bg3_A 201 KFCEVAKENGMDVFRVFDSL-----------NYLPNMLLGMEAAGSAGGVVEAAISYTGDVADPSRTKYSLQYYMGLAEE 269 (718)
T ss_dssp HHHHHHHHHTCCEEEEECSS-----------CCHHHHHHHHHHHHTTTSEEEEEEECCSCTTCTTCCTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCcCEEEEEecH-----------HHHHHHHHHHHHHHHcCCeEEEEEEeeccccCCCCCCCCHHHHHHHHHH
Confidence 66788889999987764311 134566666777777776655444443 1 0155666666666
Q ss_pred HhcCCCCCCeee
Q 022946 257 LATLPTHPESVP 268 (289)
Q Consensus 257 l~~l~~~~~~v~ 268 (289)
+.++ +.+.+.
T Consensus 270 l~~~--Ga~~I~ 279 (718)
T 3bg3_A 270 LVRA--GTHILC 279 (718)
T ss_dssp HHHH--TCSEEE
T ss_pred HHHc--CCCEEE
Confidence 6666 345443
|
| >1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12 | Back alignment and structure |
|---|
Probab=91.88 E-value=0.15 Score=44.87 Aligned_cols=146 Identities=13% Similarity=0.059 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCC-chhHHHHHHHHHHHHhcCceEEE--eCCCC-----CHHHHHHHHHcC
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR-KTNFNQILEYVKDIRDMGMEVCC--TLGML-----EKHQAIELKKAG 194 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge-~~~~~~l~e~i~~ik~~~~~i~~--~~g~l-----~~e~l~~L~~aG 194 (289)
+.++..+.++.+.++|+++|+.+-. .+.+. ....+.+.++++..++.|+++.+ ++..+ +.+.+..|++.|
T Consensus 39 ~~~~~~~Yi~~a~~~Gf~~IFTSL~--~~e~~~~~~~~~~~~l~~~a~~~g~~vi~DVsp~~~~~Lg~s~~dl~~f~~lG 116 (385)
T 1x7f_A 39 TKEKDMAYISAAARHGFSRIFTCLL--SVNRPKEEIVAEFKEIINHAKDNNMEVILDVAPAVFDQLGISYSDLSFFAELG 116 (385)
T ss_dssp CHHHHHHHHHHHHTTTEEEEEEEEC--CC--------HHHHHHHHHHHHTTCEEEEEECTTCC------CCCTHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCCEEEccCC--ccCCChHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCHHHHHHHHHcC
Confidence 5677788899999999999855331 11111 24567888888888888988654 44433 335678999999
Q ss_pred CCeEec--CCCch-HHHHhcc------CCCCCHHHHHHHHHHHHHcCCc-----eeecEEe--ecCCCHHHHHHHHHHHh
Q 022946 195 LTAYNH--NLDTS-REFYSKI------ITTRSYDERLETLKHVREAGIN-----VCSGGII--GLGEAEEDRVGLLHTLA 258 (289)
Q Consensus 195 ~~~v~i--~let~-~~~~~~i------~~~~~~~~~~~~i~~~~~~Gi~-----v~~~~i~--Glget~ed~~~~l~~l~ 258 (289)
++.+-+ |+... .....+- .-..|. -.+-+..+.+.|.. .+.++-. ..|=+.+.+.+.-++++
T Consensus 117 i~gLRLD~Gf~~~eia~ls~n~~glkIeLNASt--~~~~l~~l~~~~~n~~~l~acHNFYPr~~TGLs~~~f~~~n~~~k 194 (385)
T 1x7f_A 117 ADGIRLDVGFDGLTEAKMTNNPYGLKIELNVSN--DIAYLENILSHQANKSALIGCHNFYPQKFTGLPYDYFIRCSERFK 194 (385)
T ss_dssp CSEEEESSCCSSHHHHHHTTCTTCCEEEEETTS--CSSHHHHHTTSSCCGGGEEEECCCBCSTTCSBCHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCHHHHHHHhcCCCCCEEEEeCcC--CHHHHHHHHHcCCChHHeEEeeccCCCCCCCCCHHHHHHHHHHHH
Confidence 998875 55443 1111111 001111 23345555665543 2333333 11567788999999999
Q ss_pred cCCCCCCeeeeccceecCC
Q 022946 259 TLPTHPESVPINALLAVKG 277 (289)
Q Consensus 259 ~l~~~~~~v~i~~~~p~pg 277 (289)
+.+ +.+..|+|-.+
T Consensus 195 ~~G-----i~t~AFI~g~~ 208 (385)
T 1x7f_A 195 KHG-----IRSAAFITSHV 208 (385)
T ss_dssp HTT-----CCCEEEECCSS
T ss_pred HCC-----CcEEEEecCCc
Confidence 883 45678888654
|
| >2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A | Back alignment and structure |
|---|
Probab=91.70 E-value=2.7 Score=36.54 Aligned_cols=109 Identities=16% Similarity=0.232 Sum_probs=76.7
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCC--------C-C----C---------chhHHHHHHHHHHHHhcCceEEEeCC
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDT--------I-G----R---------KTNFNQILEYVKDIRDMGMEVCCTLG 180 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~--------~-g----e---------~~~~~~l~e~i~~ik~~~~~i~~~~g 180 (289)
+.|...+.++.+++.|++-+-++.-...+ + + . -...+++.++.+..++.|+.+.++.
T Consensus 33 s~e~a~~li~~ak~aGadavKfq~~k~~tl~s~~~~~fq~~~~~~~~y~~~~~~~l~~e~~~~L~~~~~~~Gi~~~st~- 111 (349)
T 2wqp_A 33 SLKTAFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNEEDEIKLKEYVESKGMIFISTL- 111 (349)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCHHHHHHHHHHHHHTTCEEEEEE-
T ss_pred CHHHHHHHHHHHHHhCCCEEeeeecccccccCcchhccccCCCCccHHHHHHHhCCCHHHHHHHHHHHHHhCCeEEEee-
Confidence 77899999999999999998886311000 0 0 0 0234666666666668899988776
Q ss_pred CCCHHHHHHHHHcCCCeEecC-CCch-HHHHhccCC---------C-CCHHHHHHHHHHHHHcCC
Q 022946 181 MLEKHQAIELKKAGLTAYNHN-LDTS-REFYSKIIT---------T-RSYDERLETLKHVREAGI 233 (289)
Q Consensus 181 ~l~~e~l~~L~~aG~~~v~i~-let~-~~~~~~i~~---------~-~~~~~~~~~i~~~~~~Gi 233 (289)
++.+.++.|.+.|++.+.++ -+.. -.+++.+.. + .+.+++..+++.+++.|-
T Consensus 112 -~d~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPviLstGmat~~Ei~~Ave~i~~~G~ 175 (349)
T 2wqp_A 112 -FSRAAALRLQRMDIPAYKIGSGECNNYPLIKLVASFGKPIILSTGMNSIESIKKSVEIIREAGV 175 (349)
T ss_dssp -CSHHHHHHHHHHTCSCEEECGGGTTCHHHHHHHHTTCSCEEEECTTCCHHHHHHHHHHHHHHTC
T ss_pred -CCHHHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 77999999999999999884 3433 445555432 1 268899999999888876
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=90.96 E-value=6.2 Score=32.96 Aligned_cols=118 Identities=13% Similarity=0.048 Sum_probs=74.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEec
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 200 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i 200 (289)
.++.+ .++.+.+.|...+.+......+.|. .+++ +.++ ..++++....+..+..++.+.+.+|.|.|.+
T Consensus 79 ~dp~~---~A~~y~~~GA~~IsVltd~~~f~Gs---~~~L----~~ir~~v~lPVl~Kdfi~d~~qi~ea~~~GAD~VlL 148 (272)
T 3tsm_A 79 FDPPA---LAKAYEEGGAACLSVLTDTPSFQGA---PEFL----TAARQACSLPALRKDFLFDPYQVYEARSWGADCILI 148 (272)
T ss_dssp CCHHH---HHHHHHHTTCSEEEEECCSTTTCCC---HHHH----HHHHHTSSSCEEEESCCCSTHHHHHHHHTTCSEEEE
T ss_pred CCHHH---HHHHHHHCCCCEEEEeccccccCCC---HHHH----HHHHHhcCCCEEECCccCCHHHHHHHHHcCCCEEEE
Confidence 35544 4445667899999876543333342 2222 3344 3577777777778888999999999999988
Q ss_pred CCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeecc
Q 022946 201 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINA 271 (289)
Q Consensus 201 ~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~ 271 (289)
..-.. +.++..+.++.+++.|+.+-.. -+|.+++. ...++ +++.++++.
T Consensus 149 i~a~L-----------~~~~l~~l~~~a~~lGl~~lve-----vh~~eEl~----~A~~~--ga~iIGinn 197 (272)
T 3tsm_A 149 IMASV-----------DDDLAKELEDTAFALGMDALIE-----VHDEAEME----RALKL--SSRLLGVNN 197 (272)
T ss_dssp ETTTS-----------CHHHHHHHHHHHHHTTCEEEEE-----ECSHHHHH----HHTTS--CCSEEEEEC
T ss_pred ccccc-----------CHHHHHHHHHHHHHcCCeEEEE-----eCCHHHHH----HHHhc--CCCEEEECC
Confidence 76332 3456667777788888764221 14555543 33355 567777764
|
| >3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} SCOP: c.1.24.0 PDB: 3o6d_A* | Back alignment and structure |
|---|
Probab=90.95 E-value=1.1 Score=36.85 Aligned_cols=134 Identities=13% Similarity=0.100 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeccc----CCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEe
Q 022946 124 KDAVMQAAQKAKEAGSTRFCMGAAW----RDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYN 199 (289)
Q Consensus 124 ~eei~~~~~~~~~~g~~~i~i~~~~----~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~ 199 (289)
.+++++.+... ....+|++-.. ...+|=+...+.+.++++.++..|+++..... -+.+.++.-++.|.++|.
T Consensus 75 t~emi~ial~~---kP~~vtLVPEkreE~TTegGldv~~~~L~~~i~~L~~~GIrVSLFID-pd~~qi~aA~~~GAd~IE 150 (260)
T 3o6c_A 75 NDEILNLALKL---KPHRVTLVPEKREELTTEGGLCLNHAKLKQSIEKLQNANIEVSLFIN-PSLEDIEKSKILKAQFIE 150 (260)
T ss_dssp CHHHHHHHHHH---CCSEEEECCCSGGGBCTTSSBCTTCTTHHHHHHHHHHTTCEEEEEEC-SCHHHHHHHHHTTCSEEE
T ss_pred CHHHHHHHHHc---CCCEEEECCCCCCccCCCCChhhCHHHHHHHHHHHHHCCCEEEEEeC-CCHHHHHHHHHhCCCEEE
Confidence 36667665544 45677775210 00111112557888899999999998765543 568899999999999999
Q ss_pred cCCCchHHHHh----ccCC-------------------CCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHH
Q 022946 200 HNLDTSREFYS----KIIT-------------------TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHT 256 (289)
Q Consensus 200 i~let~~~~~~----~i~~-------------------~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~ 256 (289)
+--..+.+.+. .+.. ...++.+.++.+.+++.|+.|+ .|+|=+.+.+...
T Consensus 151 LhTG~YA~a~~~~~sn~~~~~~~~~~l~~~~~~~~~~~~~el~~l~~aA~~A~~lGL~Vn----AGHGL~y~Nv~~i--- 223 (260)
T 3o6c_A 151 LHTGHYANLHNALFSNISHTAFALKELDQDKKTLQAQFEKELQNLELCAKKGLELGLKVA----AGHGLNYKNVKPV--- 223 (260)
T ss_dssp ECCHHHHHHHHHHHSSGGGSTTCCGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEE----ECTTCCTTTTHHH---
T ss_pred EechHhhhhhhccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEe----cCCCCCHHHHHHH---
Confidence 86665522222 1110 1134556666677788898885 4666565555433
Q ss_pred HhcCCCCCCeeeec
Q 022946 257 LATLPTHPESVPIN 270 (289)
Q Consensus 257 l~~l~~~~~~v~i~ 270 (289)
..++ ....++|.
T Consensus 224 -a~ip-~i~ElnIG 235 (260)
T 3o6c_A 224 -VKIK-EICELNIG 235 (260)
T ss_dssp -HTCT-TCCEEEEC
T ss_pred -HhCC-CCeEEecC
Confidence 2343 34555554
|
| >1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6 | Back alignment and structure |
|---|
Probab=90.43 E-value=2.4 Score=37.36 Aligned_cols=109 Identities=15% Similarity=0.155 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCC----C---------C----------chhHHHHHHHHHHHHhcCceEEEeC
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTI----G---------R----------KTNFNQILEYVKDIRDMGMEVCCTL 179 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~----g---------e----------~~~~~~l~e~i~~ik~~~~~i~~~~ 179 (289)
+.|...+.++.+++.|++-+-++.....+. . . -...+++.++.+..++.|+.+.++.
T Consensus 42 sle~A~~li~~Ak~aGAdavKfQ~~k~~tl~s~~~~~fq~~~~~~~~~ye~~~~~~l~~e~~~~L~~~~~~~Gi~~~stp 121 (385)
T 1vli_A 42 KLDQAFALIDAAAEAGADAVKFQMFQADRMYQKDPGLYKTAAGKDVSIFSLVQSMEMPAEWILPLLDYCREKQVIFLSTV 121 (385)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEECCBCGGGGTSCCC---------CCCHHHHGGGBSSCGGGHHHHHHHHHHTTCEEECBC
T ss_pred cHHHHHHHHHHHHHhCCCEEeeeeeccCcccCcchhhhccCCCCCccHHHHHHhcCCCHHHHHHHHHHHHHcCCcEEEcc
Confidence 779999999999999999888864321110 0 0 0123455555555567788887665
Q ss_pred CCCCHHHHHHHHHcCCCeEecC-CCch-HHHHhccCC---------C-CCHHHHHHHHHHHHHcCC
Q 022946 180 GMLEKHQAIELKKAGLTAYNHN-LDTS-REFYSKIIT---------T-RSYDERLETLKHVREAGI 233 (289)
Q Consensus 180 g~l~~e~l~~L~~aG~~~v~i~-let~-~~~~~~i~~---------~-~~~~~~~~~i~~~~~~Gi 233 (289)
++.+.++.|.+.|++.+.++ -|.. -.+++.+.. + .+.+++..+++.+++.|-
T Consensus 122 --fD~~svd~l~~~~vd~~KIgS~~~~N~pLL~~va~~gKPViLStGmaTl~Ei~~Ave~i~~~Gn 185 (385)
T 1vli_A 122 --CDEGSADLLQSTSPSAFKIASYEINHLPLLKYVARLNRPMIFSTAGAEISDVHEAWRTIRAEGN 185 (385)
T ss_dssp --CSHHHHHHHHTTCCSCEEECGGGTTCHHHHHHHHTTCSCEEEECTTCCHHHHHHHHHHHHTTTC
T ss_pred --CCHHHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHCCC
Confidence 78999999999999999874 3333 344444422 1 257777777777777765
|
| >3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A | Back alignment and structure |
|---|
Probab=90.36 E-value=2 Score=35.19 Aligned_cols=74 Identities=12% Similarity=0.095 Sum_probs=51.9
Q ss_pred HHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCc
Q 022946 127 VMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (289)
Q Consensus 127 i~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let 204 (289)
..+.++.+.+.|++.+.+.+-+....+.... .++++.++ ..++++....|..+.+.++++.++|++.|.++-..
T Consensus 37 ~~~~a~~~~~~G~~~i~v~d~~~~~~~~~~~----~~~i~~i~~~~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~ig~~~ 111 (247)
T 3tdn_A 37 LRDWVVEVEKRGAGEILLTSIDRDGTKSGYD----TEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLRGADKVSINTAA 111 (247)
T ss_dssp HHHHHHHHHHTTCSEEEEEETTTTTCSSCCC----HHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEECCSHHH
T ss_pred HHHHHHHHHHcCCCEEEEEecCcccCCCccc----HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCeeehhhHH
Confidence 3455566668999999886533221122222 45566666 45888888889999999999999999999987543
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=90.15 E-value=1.3 Score=36.47 Aligned_cols=74 Identities=11% Similarity=0.147 Sum_probs=51.8
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch
Q 022946 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 205 (289)
Q Consensus 128 ~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~ 205 (289)
++.++.+.+.|++++++..-+....|.+..+ ++++.+. ...+++..-.|.-+.+.++.+.++|++.|.++-.+.
T Consensus 34 ~~~a~~~~~~gad~lhvvDld~a~~~~~~~~----~~i~~i~~~~~~pl~vGGGIrs~e~~~~~l~~GadkVii~t~a~ 108 (243)
T 4gj1_A 34 LKKFKEYEKAGAKELHLVDLTGAKDPSKRQF----ALIEKLAKEVSVNLQVGGGIRSKEEVKALLDCGVKRVVIGSMAI 108 (243)
T ss_dssp HHHHHHHHHHTCCEEEEEEHHHHHCGGGCCH----HHHHHHHHHCCSEEEEESSCCCHHHHHHHHHTTCSEEEECTTTT
T ss_pred HHHHHHHHHCCCCEEEEEecCcccccchhHH----HHHHHHHHhcCCCeEeccccccHHHHHHHHHcCCCEEEEccccc
Confidence 3345567788999999875322222333333 4444443 568888888999999999999999999999876554
|
| >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A | Back alignment and structure |
|---|
Probab=89.91 E-value=5.8 Score=32.77 Aligned_cols=125 Identities=12% Similarity=0.067 Sum_probs=73.8
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeC--C-CC-CHHHHHHHHHcCCCeE
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTL--G-ML-EKHQAIELKKAGLTAY 198 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~--g-~l-~~e~l~~L~~aG~~~v 198 (289)
..+.+.+.++.+++.|++.|+|+.-. .-| ....+.+.++++.... +++..+- . .. ..+.++.|.+.|+++|
T Consensus 71 E~~~M~~Di~~~~~~GadGvV~G~Lt--~dg-~iD~~~~~~Li~~a~~--~~vTFHRAfD~~~d~~~ale~L~~lG~~rI 145 (256)
T 1twd_A 71 EFAAILEDVRTVRELGFPGLVTGVLD--VDG-NVDMPRMEKIMAAAGP--LAVTFHRAFDMCANPLYTLNNLAELGIARV 145 (256)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEECCBC--TTS-SBCHHHHHHHHHHHTT--SEEEECGGGGGCSCHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeeEC--CCC-CcCHHHHHHHHHHhCC--CcEEEECchhccCCHHHHHHHHHHcCCCEE
Confidence 44667778888899999999986522 223 3566777777766653 4443321 1 12 2455899999999999
Q ss_pred ecCCCchHHHHhccCCCCCHHHHHHHHHHHHH-cCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccc
Q 022946 199 NHNLDTSREFYSKIITTRSYDERLETLKHVRE-AGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINAL 272 (289)
Q Consensus 199 ~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~-~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~ 272 (289)
.-+=.. .+..+-++.++.+.+ ++ ...+|.|=|-+.+.+...+ . . +...+.+..-
T Consensus 146 LTSG~~-----------~~a~~g~~~L~~Lv~~a~---~i~Im~GgGv~~~Ni~~l~-~---t--Gv~e~H~Sa~ 200 (256)
T 1twd_A 146 LTSGQK-----------SDALQGLSKIMELIAHRD---APIIMAGAGVRAENLHHFL-D---A--GVLEVHSSAG 200 (256)
T ss_dssp EECTTS-----------SSTTTTHHHHHHHHTSSS---CCEEEEESSCCTTTHHHHH-H---H--TCSEEEECCE
T ss_pred ECCCCC-----------CCHHHHHHHHHHHHHhhC---CcEEEecCCcCHHHHHHHH-H---c--CCCeEeECCc
Confidence 753211 122222344444433 33 4567888777777666654 2 2 3455555443
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=89.60 E-value=5.3 Score=32.97 Aligned_cols=117 Identities=14% Similarity=0.041 Sum_probs=70.0
Q ss_pred HHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch
Q 022946 127 VMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 205 (289)
Q Consensus 127 i~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~ 205 (289)
..+.++.+.+.|+..+.+......+.|.. ++ ++.++ ..++.+....+..++..+.+.+.+|.|.|.++....
T Consensus 67 p~~~A~~~~~~GA~~isvlt~~~~f~G~~---~~----l~~i~~~v~lPvl~kdfI~d~~qi~~a~~~GAD~VlL~~~~l 139 (254)
T 1vc4_A 67 PVEAALAYARGGARAVSVLTEPHRFGGSL---LD----LKRVREAVDLPLLRKDFVVDPFMLEEARAFGASAALLIVALL 139 (254)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCSSSCCCH---HH----HHHHHHHCCSCEEEESCCCSHHHHHHHHHTTCSEEEEEHHHH
T ss_pred HHHHHHHHHHcCCCEEEEecchhhhccCH---HH----HHHHHHhcCCCEEECCcCCCHHHHHHHHHcCCCEEEECccch
Confidence 34555666788999998865433333432 22 22233 457777777788899899999999999999876321
Q ss_pred HHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccce
Q 022946 206 REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALL 273 (289)
Q Consensus 206 ~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~ 273 (289)
+ ++..+.++.+++.|+.+- +- -++.++... ..++ +.+.++++...
T Consensus 140 -----------~-~~l~~l~~~a~~lGl~~l----ve-v~~~~E~~~----a~~~--gad~IGvn~~~ 184 (254)
T 1vc4_A 140 -----------G-ELTGAYLEEARRLGLEAL----VE-VHTERELEI----ALEA--GAEVLGINNRD 184 (254)
T ss_dssp -----------G-GGHHHHHHHHHHHTCEEE----EE-ECSHHHHHH----HHHH--TCSEEEEESBC
T ss_pred -----------H-HHHHHHHHHHHHCCCeEE----EE-ECCHHHHHH----HHHc--CCCEEEEcccc
Confidence 1 334555566666776542 22 234455432 2233 35666666543
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=89.41 E-value=1.8 Score=37.40 Aligned_cols=81 Identities=12% Similarity=0.005 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcC-CCeEe
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAG-LTAYN 199 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG-~~~v~ 199 (289)
.+.++..+.++.+.+.|++.+.+.++.......+..-..-.+.++.++ ..++.+..+.|..+.+.++++.+.| +|.|.
T Consensus 226 ~~~~~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~s~~~a~~~l~~G~aD~V~ 305 (338)
T 1z41_A 226 LDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIF 305 (338)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHcCCceEEe
Confidence 467888888888888999998887643211000000011234445555 3477777777777889888888888 89888
Q ss_pred cCC
Q 022946 200 HNL 202 (289)
Q Consensus 200 i~l 202 (289)
++=
T Consensus 306 iGR 308 (338)
T 1z41_A 306 IGR 308 (338)
T ss_dssp ECH
T ss_pred ecH
Confidence 763
|
| >2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=88.86 E-value=10 Score=32.43 Aligned_cols=126 Identities=11% Similarity=0.086 Sum_probs=68.8
Q ss_pred HHHHHHcCCcEEEEecccCCCCCCch----hHHHHHHHHHHHHhc-CceEE-EeCCCCCHHHHHHHHHcCCCeEecCCCc
Q 022946 131 AQKAKEAGSTRFCMGAAWRDTIGRKT----NFNQILEYVKDIRDM-GMEVC-CTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (289)
Q Consensus 131 ~~~~~~~g~~~i~i~~~~~~~~ge~~----~~~~l~e~i~~ik~~-~~~i~-~~~g~l~~e~l~~L~~aG~~~v~i~let 204 (289)
++...+.|++-+.+...+........ ..+++.++++.+++. ++.+. -..|. ...++.|.+.|++.+++.-..
T Consensus 185 ~~~~~~aGad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~i~~~~g~~~i~~~~g~--~~~l~~l~~~g~d~~~~d~~~ 262 (338)
T 2eja_A 185 LKEQIKAGADVVQIFDSWVNNLSLEDYGEYVYPYVNYLISELKDFSDTPVIYFFRGS--SSFIDLAVDYRADALSVDWSV 262 (338)
T ss_dssp HHHHHHTTCSEEEEEETTGGGSCHHHHHHHTHHHHHHHHHHHHHHCCCCEEEEESSH--HHHHHHHTTSCCSEEECCTTS
T ss_pred HHHHHHhCCCEEEEecCccccCCHHHHHHHhHHHHHHHHHHHhhcCCCCEEEEcCCc--HHHHHHHHHcCCCEEEeCCCC
Confidence 33444679988776554322222112 225555566666654 55543 33454 678899999999988774332
Q ss_pred h-HHHHhcc--C--CC-------CCHHHHHHHHHHHHHc-CCceeecEEeecC------CCHHHHHHHHHHHhcC
Q 022946 205 S-REFYSKI--I--TT-------RSYDERLETLKHVREA-GINVCSGGIIGLG------EAEEDRVGLLHTLATL 260 (289)
Q Consensus 205 ~-~~~~~~i--~--~~-------~~~~~~~~~i~~~~~~-Gi~v~~~~i~Glg------et~ed~~~~l~~l~~l 260 (289)
. .+..+.+ . ++ .+.+++.+.++.+.+. |- ..++|+++| -..|.+..+++.+++.
T Consensus 263 dl~~~~~~~~~~l~Gn~dp~~l~gt~e~i~~~v~~~l~~~g~--~~g~I~~~g~gi~~~~p~en~~a~v~~v~~~ 335 (338)
T 2eja_A 263 DIPELFKIYDKGFQGNLEPAVLYASEEVIEEKTLGLLRRIPV--KTRYVFNLGHGLAPDMELEKVKYLVDLVKSF 335 (338)
T ss_dssp CHHHHHHHCCSEEECCBCGGGGGSCHHHHHHHHHHHHTTCCC--SSSEEBCBSSCCCTTSCHHHHHHHHHHHHTC
T ss_pred CHHHHHHhCCeEEEECCCHHHhcCCHHHHHHHHHHHHHHhCC--CCCeEEeCCCCCCCCCCHHHHHHHHHHHHHh
Confidence 2 4443332 1 11 2466666666665443 42 124565443 2446666666666655
|
| >4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D* | Back alignment and structure |
|---|
Probab=88.83 E-value=6.9 Score=33.57 Aligned_cols=135 Identities=14% Similarity=0.139 Sum_probs=85.3
Q ss_pred HHHHHHHHHHH-HcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEe---CCCCCHHHHHHHHHcCCC---
Q 022946 125 DAVMQAAQKAK-EAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCT---LGMLEKHQAIELKKAGLT--- 196 (289)
Q Consensus 125 eei~~~~~~~~-~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~---~g~l~~e~l~~L~~aG~~--- 196 (289)
+++.+.++... +.|.+-|.+++....+.+.+...+...+.++.+. ..++.+.+. +-..+.+++++-.++|.+
T Consensus 80 ~~~~~~A~~~v~~~GAdiIDIg~eStrP~~~~vs~ee~~~~V~~v~~~~~vPlsIDg~~~~T~~~eV~eaAleagag~~~ 159 (323)
T 4djd_D 80 NEPGRWAQKCVAEYGADLIYLKLDGADPEGANHSVDQCVATVKEVLQAVGVPLVVVGCGDVEKDHEVLEAVAEAAAGENL 159 (323)
T ss_dssp TCHHHHHHHHHHTTCCSEEEEECGGGCTTTTCCCHHHHHHHHHHHHHHCCSCEEEECCSCHHHHHHHHHHHHHHTTTSCC
T ss_pred HhHHHHHHHHHHHcCCCEEEEcCccCCCCCCCCCHHHHHHHHHHHHhhCCceEEEECCCCCCCCHHHHHHHHHhcCCCCC
Confidence 34666676666 8899999987655555554555566777777776 346655443 124567888877777754
Q ss_pred eE-ecCCCchHHHHhccC---------CCCCHHHHHHHHHHHHHcCCc---eeecEEee-cCCCHHHHHHHHHHHhc
Q 022946 197 AY-NHNLDTSREFYSKII---------TTRSYDERLETLKHVREAGIN---VCSGGIIG-LGEAEEDRVGLLHTLAT 259 (289)
Q Consensus 197 ~v-~i~let~~~~~~~i~---------~~~~~~~~~~~i~~~~~~Gi~---v~~~~i~G-lget~ed~~~~l~~l~~ 259 (289)
-| +++.+..+++..... ...+.+-..+.++.+.++|+. +..+-.+| +|-+.++-.++++.++.
T Consensus 160 lINsv~~~~~~~m~~laa~~g~~vVlmh~~d~~~~~~l~~~a~~~GI~~e~IIlDPg~g~fgk~~e~~l~~l~~ir~ 236 (323)
T 4djd_D 160 LLGNAEQENYKSLTAACMVHKHNIIARSPLDINICKQLNILINEMNLPLDHIVIDPSIGGLGYGIEYSFSIMERIRL 236 (323)
T ss_dssp EEEEEBTTBCHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHTTTCCGGGEEEECCCCCTTTTHHHHHHHHHHHHH
T ss_pred eEEECCcccHHHHHHHHHHhCCeEEEEccchHHHHHHHHHHHHHcCCCHHHEEEeCCCccccCCHHHHHHHHHHHHH
Confidence 22 244443234333221 122455566667788999993 65666667 57888888888888764
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=88.69 E-value=2.9 Score=34.41 Aligned_cols=99 Identities=16% Similarity=0.127 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE-ecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEec
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 200 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i-~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i 200 (289)
+...+.++++.+.+.|++.+++ ...+.+ ...-..-..+++.++... +..+.+..-.. -..+.++.+.++|.|.+.+
T Consensus 38 D~~~L~~~i~~l~~~G~d~lHvDVmDg~F-Vpnit~G~~~v~~lr~~~p~~~ldvHLmv~-~p~~~i~~~~~aGAd~itv 115 (246)
T 3inp_A 38 DLARLGDDVKAVLAAGADNIHFDVMDNHY-VPNLTFGPMVLKALRDYGITAGMDVHLMVK-PVDALIESFAKAGATSIVF 115 (246)
T ss_dssp CGGGHHHHHHHHHHTTCCCEEEEEEBSSS-SSCBCCCHHHHHHHHHHTCCSCEEEEEECS-SCHHHHHHHHHHTCSEEEE
T ss_pred ChhhHHHHHHHHHHcCCCEEEEEecCCCc-CcchhcCHHHHHHHHHhCCCCeEEEEEeeC-CHHHHHHHHHHcCCCEEEE
Confidence 4455677777888889887766 222221 100111245555555443 33333322211 2356789999999999999
Q ss_pred CCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCcee
Q 022946 201 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVC 236 (289)
Q Consensus 201 ~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~ 236 (289)
..|+.+ ...+.++.+++.|+++.
T Consensus 116 H~Ea~~-------------~~~~~i~~ir~~G~k~G 138 (246)
T 3inp_A 116 HPEASE-------------HIDRSLQLIKSFGIQAG 138 (246)
T ss_dssp CGGGCS-------------CHHHHHHHHHTTTSEEE
T ss_pred ccccch-------------hHHHHHHHHHHcCCeEE
Confidence 987741 23455666677776543
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=88.60 E-value=5.4 Score=32.51 Aligned_cols=68 Identities=18% Similarity=0.177 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-c-CceEEEeCCCCCHHHHHHHHHcCCCeEe
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-M-GMEVCCTLGMLEKHQAIELKKAGLTAYN 199 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~-~~~i~~~~g~l~~e~l~~L~~aG~~~v~ 199 (289)
.++++..+.++.+.+.|++-+.+... . +.. .+.++.+++ . ++.+-. ...++.+.++...++|.+.+.
T Consensus 43 ~~~~~a~~~a~al~~gGi~~iEvt~~--t----~~a----~e~I~~l~~~~~~~~iGa-GTVlt~~~a~~Ai~AGA~fIv 111 (232)
T 4e38_A 43 DNAEDIIPLGKVLAENGLPAAEITFR--S----DAA----VEAIRLLRQAQPEMLIGA-GTILNGEQALAAKEAGATFVV 111 (232)
T ss_dssp SSGGGHHHHHHHHHHTTCCEEEEETT--S----TTH----HHHHHHHHHHCTTCEEEE-ECCCSHHHHHHHHHHTCSEEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCC--C----CCH----HHHHHHHHHhCCCCEEeE-CCcCCHHHHHHHHHcCCCEEE
Confidence 36688899999999999998877541 1 222 344444442 2 222221 235889999999999999885
Q ss_pred c
Q 022946 200 H 200 (289)
Q Consensus 200 i 200 (289)
.
T Consensus 112 s 112 (232)
T 4e38_A 112 S 112 (232)
T ss_dssp C
T ss_pred e
Confidence 4
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=88.56 E-value=1.6 Score=37.87 Aligned_cols=75 Identities=15% Similarity=0.064 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCC----CCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcC-CC
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDT----IGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAG-LT 196 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~----~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG-~~ 196 (289)
+.++..+.++.+.+.|++.+.+..+.... .+ +. ...++++.++ ..++.+..+.|..+.+.++++.+.| +|
T Consensus 227 ~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~-~~---~~~~~~~~ik~~~~iPVi~~GgI~s~e~a~~~L~~G~aD 302 (340)
T 3gr7_A 227 TAKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVY-PG---YQVPFAELIRREADIPTGAVGLITSGWQAEEILQNGRAD 302 (340)
T ss_dssp CGGGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCC-TT---TTHHHHHHHHHHTTCCEEEESSCCCHHHHHHHHHTTSCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCccCCCCCCC-cc---ccHHHHHHHHHHcCCcEEeeCCCCCHHHHHHHHHCCCee
Confidence 45667777777777888887775432111 11 11 1233445555 3466676666666788887777777 78
Q ss_pred eEecC
Q 022946 197 AYNHN 201 (289)
Q Consensus 197 ~v~i~ 201 (289)
.|.++
T Consensus 303 ~V~iG 307 (340)
T 3gr7_A 303 LVFLG 307 (340)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 77776
|
| >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* | Back alignment and structure |
|---|
Probab=88.37 E-value=7.3 Score=33.60 Aligned_cols=95 Identities=8% Similarity=0.120 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hc---CceEEEe--CCCCCHHHHHHHHHcCCC
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DM---GMEVCCT--LGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~---~~~i~~~--~g~l~~e~l~~L~~aG~~ 196 (289)
+++.+.+.++.+.+.|++.|.+..... ...| ..+.++++.++ .. .+.++.+ .|.-....+..+ ++|++
T Consensus 167 ~~~~~~~~~~~~~~~Ga~~i~l~DT~G--~~~P---~~v~~lv~~l~~~~p~~~i~~H~Hnd~GlA~AN~laAv-~aGa~ 240 (337)
T 3ble_A 167 SPDYVKSLVEHLSKEHIERIFLPDTLG--VLSP---EETFQGVDSLIQKYPDIHFEFHGHNDYDLSVANSLQAI-RAGVK 240 (337)
T ss_dssp CHHHHHHHHHHHHTSCCSEEEEECTTC--CCCH---HHHHHHHHHHHHHCTTSCEEEECBCTTSCHHHHHHHHH-HTTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCC--CcCH---HHHHHHHHHHHHhcCCCeEEEEecCCcchHHHHHHHHH-HhCCC
Confidence 678888888888889999888854110 1224 34444444444 22 2334443 344334444444 56999
Q ss_pred eEecCCCch-HHHHhccCCCCCHHHHHHHHHHH
Q 022946 197 AYNHNLDTS-REFYSKIITTRSYDERLETLKHV 228 (289)
Q Consensus 197 ~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~ 228 (289)
.|..++.+. . -...-+.++++..++..
T Consensus 241 ~vd~tv~GlG~-----~aGN~~~E~lv~~L~~~ 268 (337)
T 3ble_A 241 GLHASINGLGE-----RAGNTPLEALVTTIHDK 268 (337)
T ss_dssp EEEEBGGGCSS-----TTCBCBHHHHHHHHHHH
T ss_pred EEEEecccccc-----cccchhHHHHHHHHHHh
Confidence 998887665 3 11223577777766654
|
| >3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A* | Back alignment and structure |
|---|
Probab=87.92 E-value=4.1 Score=34.78 Aligned_cols=101 Identities=19% Similarity=0.134 Sum_probs=58.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCC-C----CchhHHHHHHHHHHHHhc-C--ceEE--EeC----CCCCH-HH
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-G----RKTNFNQILEYVKDIRDM-G--MEVC--CTL----GMLEK-HQ 186 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~-g----e~~~~~~l~e~i~~ik~~-~--~~i~--~~~----g~l~~-e~ 186 (289)
.+.+++.+.+..+.+.|++.|....|+.... | .+..+++-.++++.+++. + +.+. ..+ ..-+. ..
T Consensus 83 ~~~~~l~~~L~~~~~~GI~niLaLrGD~p~~~g~~~~~~~~f~~a~~Lv~~ir~~~g~~f~igvA~yPE~Hp~~~~~~~d 162 (310)
T 3apt_A 83 QSRKEVAEVLHRFVESGVENLLALRGDPPRGERVFRPHPEGFRYAAELVALIRERYGDRVSVGGAAYPEGHPESESLEAD 162 (310)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEEECCCCSTTCCSCCCCTTSCSSHHHHHHHHHHHHGGGSEEEEEECTTCCTTSSCHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEEEeCCCcCCCCCCHHHH
Confidence 4779999999999999999987666554332 2 112244666777666643 3 3432 222 12222 23
Q ss_pred HHHH---HHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCc
Q 022946 187 AIEL---KKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGIN 234 (289)
Q Consensus 187 l~~L---~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~ 234 (289)
++.| .++|.+.+.-=+ -.+.+.+.+.++.+++.|+.
T Consensus 163 ~~~Lk~Kv~aGAdf~iTQ~------------ffD~~~~~~f~~~~r~~Gi~ 201 (310)
T 3apt_A 163 LRHFKAKVEAGLDFAITQL------------FFNNAHYFGFLERARRAGIG 201 (310)
T ss_dssp HHHHHHHHHHHCSEEEECC------------CSCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCCEEEecc------------cCCHHHHHHHHHHHHHcCCC
Confidence 4444 347888654211 13556667777777777753
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=87.89 E-value=3.1 Score=38.22 Aligned_cols=105 Identities=15% Similarity=0.174 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--CceEEEeCCCCCHHHHHHHHHcCCCeEecCC
Q 022946 125 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 125 eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
++..+.+..+.+.|++-+++-..- | +-..+++.++.+|+. .+.+..-| ..+.+..+.|.++|+|.|-+|+
T Consensus 280 ~d~~eR~~aLv~AGvD~iviD~ah----G---hs~~v~~~i~~ik~~~p~~~viaGN-VaT~e~a~~Li~aGAD~vkVGi 351 (556)
T 4af0_A 280 PGDKDRLKLLAEAGLDVVVLDSSQ----G---NSVYQIEFIKWIKQTYPKIDVIAGN-VVTREQAAQLIAAGADGLRIGM 351 (556)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCSC----C---CSHHHHHHHHHHHHHCTTSEEEEEE-ECSHHHHHHHHHHTCSEEEECS
T ss_pred ccHHHHHHHHHhcCCcEEEEeccc----c---ccHHHHHHHHHHHhhCCcceEEecc-ccCHHHHHHHHHcCCCEEeecC
Confidence 345667778889999988884421 2 336778888888855 34443322 4789999999999999999887
Q ss_pred Cch-HHHHhccCC-C-CCHHHHHHHHHHHHHcCCceee
Q 022946 203 DTS-REFYSKIIT-T-RSYDERLETLKHVREAGINVCS 237 (289)
Q Consensus 203 et~-~~~~~~i~~-~-~~~~~~~~~i~~~~~~Gi~v~~ 237 (289)
-.. -=+-+.+.. + .....+.++.+.+++.|+++.+
T Consensus 352 GpGSiCtTr~v~GvG~PQ~tAi~~~a~~a~~~~vpvIA 389 (556)
T 4af0_A 352 GSGSICITQEVMAVGRPQGTAVYAVAEFASRFGIPCIA 389 (556)
T ss_dssp SCSTTBCCTTTCCSCCCHHHHHHHHHHHHGGGTCCEEE
T ss_pred CCCcccccccccCCCCcHHHHHHHHHHHHHHcCCCEEe
Confidence 553 111111111 1 1366778888888999987644
|
| >2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A {Candidatus cloacamonas acidaminovoransorganism_taxid} PDB: 2y7d_A 2y7f_A* 2y7g_A | Back alignment and structure |
|---|
Probab=87.84 E-value=11 Score=31.65 Aligned_cols=107 Identities=14% Similarity=0.153 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCc-hhHHHHHHHHHHHHhc--CceEEEeCCCC---CHH-HHHHHHHcC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-TNFNQILEYVKDIRDM--GMEVCCTLGML---EKH-QAIELKKAG 194 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~-~~~~~l~e~i~~ik~~--~~~i~~~~g~l---~~e-~l~~L~~aG 194 (289)
.+++||.+.+.++.+.|..-+++-.= +..|.+ ...+.+.+++..+++. ++-+..|.|.- +.+ .+.-+ +..
T Consensus 31 vTpeEia~~A~~a~~AGAaivHlHvR--d~~G~ps~d~~~~~e~~~~IR~~~pd~ii~~TTg~~~~~~~eeR~~~~-~~~ 107 (282)
T 2y7e_A 31 ITPEEQAKEAKACFEAGARVIHLHIR--EDDGRPSQRLDRFQEAISAIREVVPEIIIQISTGGAVGESFDKRLAPL-ALK 107 (282)
T ss_dssp CSHHHHHHHHHHHHHHTEEEEEECEE--CTTSCEECCHHHHHHHHHHHHHHCTTSEEEECSSCSTTCCHHHHHGGG-GGC
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEeec--CCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCHHHHHHHh-hcC
Confidence 78999999999999999988888442 223444 4567777888888843 56665554322 333 33333 444
Q ss_pred CCeEecCCCch--HHHHhccCCCCCHHHHHHHHHHHHHcCCce
Q 022946 195 LTAYNHNLDTS--REFYSKIITTRSYDERLETLKHVREAGINV 235 (289)
Q Consensus 195 ~~~v~i~let~--~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v 235 (289)
-+..++++-|. .+ .+ -..+++.+.+.++.+++.|+++
T Consensus 108 Pe~asl~~gs~Nf~~---~v-~~n~~~~~~~~~~~~~e~Gv~p 146 (282)
T 2y7e_A 108 PEMATLNAGTLNFGD---DI-FINHPADIIRLAEAFKQYNVVP 146 (282)
T ss_dssp CSEEEEECCCEEETT---EE-ECCCHHHHHHHHHHHHHTTCEE
T ss_pred CCEEEeccccccccc---cc-ccCCHHHHHHHHHHHHHcCCeE
Confidence 56665544332 11 00 1134555555555555555543
|
| >3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=87.57 E-value=7.6 Score=33.69 Aligned_cols=109 Identities=12% Similarity=0.153 Sum_probs=69.7
Q ss_pred CHHHHHHHHHHHHHcCCc-----EEEEecccCCC---------CCCc---------hhHHHHHHHHHHHHhcCceEEEeC
Q 022946 123 TKDAVMQAAQKAKEAGST-----RFCMGAAWRDT---------IGRK---------TNFNQILEYVKDIRDMGMEVCCTL 179 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~-----~i~i~~~~~~~---------~ge~---------~~~~~l~e~i~~ik~~~~~i~~~~ 179 (289)
+.+...+.++.+.+.|.+ .|-|+.-..+. .... ...+++.++.+..++.|+.+.++.
T Consensus 19 dle~Ak~lI~~A~~aGad~~~d~avKfQt~~~d~l~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~~~st~ 98 (350)
T 3g8r_A 19 NVEHGVALIRAIRESCQGFDFDFGFKLQYRNLDTFIHSSFKGRDDVKYVKRFEETRLQPEQMQKLVAEMKANGFKAICTP 98 (350)
T ss_dssp CSHHHHHHHHHHHHHTTTCCSEEEEEEEECCHHHHBCGGGTTCCSSSSHHHHHHTCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cHHHHHHHHHHHHHhCCcccCCeeEEccccchhhhcChhccCccHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcEEecc
Confidence 446666777777777776 77776421000 0000 223455556566668899988776
Q ss_pred CCCCHHHHHHHHHcCCCeEecC-CCch-HHHHhccCC---------C-CCHHHHHHHHHHHHHcCC
Q 022946 180 GMLEKHQAIELKKAGLTAYNHN-LDTS-REFYSKIIT---------T-RSYDERLETLKHVREAGI 233 (289)
Q Consensus 180 g~l~~e~l~~L~~aG~~~v~i~-let~-~~~~~~i~~---------~-~~~~~~~~~i~~~~~~Gi 233 (289)
++.+.++.|.+.|++.+.++ -|-. -.+++.+.. + .+.+++..+++.+.+.|-
T Consensus 99 --fD~~svd~l~~~~v~~~KI~S~~~~N~pLL~~va~~gKPviLstGmstl~Ei~~Ave~i~~~g~ 162 (350)
T 3g8r_A 99 --FDEESVDLIEAHGIEIIKIASCSFTDWPLLERIARSDKPVVASTAGARREDIDKVVSFMLHRGK 162 (350)
T ss_dssp --CSHHHHHHHHHTTCCEEEECSSSTTCHHHHHHHHTSCSCEEEECTTCCHHHHHHHHHHHHTTTC
T ss_pred --CCHHHHHHHHHcCCCEEEECcccccCHHHHHHHHhhCCcEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 78999999999999999984 3443 344444432 1 267888888888877764
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=87.56 E-value=2.3 Score=34.52 Aligned_cols=75 Identities=16% Similarity=0.160 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCC
Q 022946 125 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLD 203 (289)
Q Consensus 125 eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~le 203 (289)
++..+.++.+.+.|++.+.+...+.. + .......+.++.++ ..++.+..+.+..+.+.++.+.++|++.|.++-.
T Consensus 33 ~~~~~~a~~~~~~G~d~i~v~~~~~~--~--~~~~~~~~~i~~i~~~~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i~~~ 108 (253)
T 1h5y_A 33 GDPVEMAVRYEEEGADEIAILDITAA--P--EGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVNTA 108 (253)
T ss_dssp ECHHHHHHHHHHTTCSCEEEEECCCC--T--TTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEESHH
T ss_pred ccHHHHHHHHHHcCCCEEEEEeCCcc--c--cCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChH
Confidence 45566677777899998887642211 1 12234566677776 4577888888888899999999999999998753
|
| >1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1 | Back alignment and structure |
|---|
Probab=87.56 E-value=11 Score=31.03 Aligned_cols=127 Identities=18% Similarity=0.150 Sum_probs=78.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEe---------CCCCCHHHHHHHHH
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCT---------LGMLEKHQAIELKK 192 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~---------~g~l~~e~l~~L~~ 192 (289)
+++..+...++-+-+ -++-+-|++|.... ...+.+.+.++.+++.++.++.- .| .-++.++..++
T Consensus 23 lg~~~~~d~Le~~g~-yID~lKfg~Gt~~l----~~~~~l~eki~l~~~~gV~v~~GGTl~E~~~~qg-~~~~yl~~~k~ 96 (251)
T 1qwg_A 23 LPPKFVEDYLKVCGD-YIDFVKFGWGTSAV----IDRDVVKEKINYYKDWGIKVYPGGTLFEYAYSKG-KFDEFLNECEK 96 (251)
T ss_dssp CCHHHHHHHHHHHGG-GCSEEEECTTGGGG----SCHHHHHHHHHHHHTTTCEEEECHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhh-hcceEEecCceeee----cCHHHHHHHHHHHHHcCCeEECCcHHHHHHHHcC-cHHHHHHHHHH
Confidence 677776666554433 36667776543221 12244777777777778776532 23 34677888888
Q ss_pred cCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec-------CCCHHHHHHHHHHHhcCCCCCC
Q 022946 193 AGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-------GEAEEDRVGLLHTLATLPTHPE 265 (289)
Q Consensus 193 aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-------get~ed~~~~l~~l~~l~~~~~ 265 (289)
.|++.|.+|--+. .-+.+++.+.|+.+++.|+.+-+.+ |- -.+++++++.++.-.+. +.+
T Consensus 97 lGf~~iEiS~G~i---------~l~~~~~~~~I~~~~~~G~~v~~Ev--G~k~~~~~~~~~~~~~I~~~~~~LeA--GA~ 163 (251)
T 1qwg_A 97 LGFEAVEISDGSS---------DISLEERNNAIKRAKDNGFMVLTEV--GKKMPDKDKQLTIDDRIKLINFDLDA--GAD 163 (251)
T ss_dssp HTCCEEEECCSSS---------CCCHHHHHHHHHHHHHTTCEEEEEE--CCSSHHHHTTCCHHHHHHHHHHHHHH--TCS
T ss_pred cCCCEEEECCCcc---------cCCHHHHHHHHHHHHHCCCEEeeec--cccCCcccCCCCHHHHHHHHHHHHHC--CCc
Confidence 9999988876442 2357888888888988888773322 33 13456666666655554 344
Q ss_pred ee
Q 022946 266 SV 267 (289)
Q Consensus 266 ~v 267 (289)
.|
T Consensus 164 ~V 165 (251)
T 1qwg_A 164 YV 165 (251)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
| >3e49_A Uncharacterized protein DUF849 with A TIM barrel; structural genomics, joint center for structural genomics; HET: MSE; 1.75A {Burkholderia xenovorans LB400} | Back alignment and structure |
|---|
Probab=87.53 E-value=12 Score=31.77 Aligned_cols=79 Identities=24% Similarity=0.231 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCC-CCCc-hhHHHHHHHHHHHHh-cCceEEEeCC-C--C-CHHHHHHHHHc
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDT-IGRK-TNFNQILEYVKDIRD-MGMEVCCTLG-M--L-EKHQAIELKKA 193 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~-~ge~-~~~~~l~e~i~~ik~-~~~~i~~~~g-~--l-~~e~l~~L~~a 193 (289)
-.+++||.+.+.++.+.|..-+++-. +++ .|.+ ...+.+.+++..+++ ..+-+..|.| . . .++.+..+.+.
T Consensus 28 PvTpeEia~~A~~~~~AGAaivHlHv--Rdp~dG~ps~d~~~~~e~~~~IR~~~d~iI~~TTgg~~~~~~eerla~~~~~ 105 (311)
T 3e49_A 28 PVTPDEVAQASIGAAEAGAAVIHLHA--RDPRDGRPTQDPAAFAEFLPRIKSNTDAVINLTTGGSPHMTVEERLRPATHY 105 (311)
T ss_dssp CCSHHHHHHHHHHHHHHTCSEEEECE--ECTTTCCEECCHHHHTTHHHHHHHHCCCEEEECSCSCTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEee--cCCCCCCcCCCHHHHHHHHHHHHHhCCcEEEECCCCCCCCCHHHHHHHHHhc
Confidence 37899999999999999999888844 332 2444 455677777777773 4444443432 2 2 34455655554
Q ss_pred CCCeEecC
Q 022946 194 GLTAYNHN 201 (289)
Q Consensus 194 G~~~v~i~ 201 (289)
.-+..+++
T Consensus 106 ~Pe~aSln 113 (311)
T 3e49_A 106 MPELASLN 113 (311)
T ss_dssp CCSEEEEE
T ss_pred CCCeeeec
Confidence 55555444
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=87.41 E-value=4.8 Score=34.59 Aligned_cols=79 Identities=14% Similarity=0.088 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCC------------C---CCCchhHHHHHHHHHHHHh-c--CceEEEeCCCCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRD------------T---IGRKTNFNQILEYVKDIRD-M--GMEVCCTLGMLE 183 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~------------~---~ge~~~~~~l~e~i~~ik~-~--~~~i~~~~g~l~ 183 (289)
++.+++.+.++.+.+.|++-|.+.+.... . .| +......++.++.+++ . ++.+..+.|..+
T Consensus 222 ~~~~~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g-~~~~~~~~~~i~~i~~~~~~~ipVi~~GGI~~ 300 (336)
T 1f76_A 222 LSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSG-RPLQLKSTEIIRRLSLELNGRLPIIGVGGIDS 300 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEE-GGGHHHHHHHHHHHHHHHTTSSCEEEESSCCS
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEeCCcccccccccccccccCCCcCC-chhHHHHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence 56678888888899999999988653210 0 12 1123345566777663 4 688888889999
Q ss_pred HHHHHHHHHcCCCeEecC
Q 022946 184 KHQAIELKKAGLTAYNHN 201 (289)
Q Consensus 184 ~e~l~~L~~aG~~~v~i~ 201 (289)
.+.+.++.++|+|.|.++
T Consensus 301 ~~da~~~l~~GAd~V~ig 318 (336)
T 1f76_A 301 VIAAREKIAAGASLVQIY 318 (336)
T ss_dssp HHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHCCCCEEEee
Confidence 999988888999999876
|
| >3chv_A Prokaryotic domain of unknown function (DUF849) W barrel fold; TIM barrel fold, structural genomics, joint center for struc genomics; HET: MSE; 1.45A {Silicibacter pomeroyi dss-3} PDB: 3fa5_A | Back alignment and structure |
|---|
Probab=87.30 E-value=7 Score=32.86 Aligned_cols=78 Identities=17% Similarity=0.142 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCc-hhHHHHHHHHHHHHhc--CceEEEeCCC--C-CHHHHHHHHHcCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-TNFNQILEYVKDIRDM--GMEVCCTLGM--L-EKHQAIELKKAGL 195 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~-~~~~~l~e~i~~ik~~--~~~i~~~~g~--l-~~e~l~~L~~aG~ 195 (289)
.+++||.+.+.++.+.|..-+++-. +++-|.+ ...+.+.+++..+++. ++-+..|.|. . .++.+..+ +..-
T Consensus 31 vTpeEia~~A~~~~~AGAaivHlH~--Rd~~G~ps~d~~~~~e~~~~IR~~~pd~ii~~TTgg~~~~~eeR~~~~-~~~P 107 (284)
T 3chv_A 31 ITVSEQVESTQEAFEAGAAIAHCHV--RNDDGTPSSDPDRFARLTEGLHTHCPGMIVQFSTGGRSGAGQARGGML-PLKP 107 (284)
T ss_dssp CSHHHHHHHHHHHHHHTCCEEEECE--ECTTSCEECCHHHHHHHHHHHHHHSTTCEEEECCCTTTCCGGGGGTTG-GGCC
T ss_pred CCHHHHHHHHHHHHHcCCcEEEeee--cCCCCCcCCCHHHHHHHHHHHHHhCCCeEEEeCCCCCCCCHHHHHHhh-hcCC
Confidence 7999999999999999999888854 3333444 4567777788888743 5666555432 1 22333333 3444
Q ss_pred CeEecCC
Q 022946 196 TAYNHNL 202 (289)
Q Consensus 196 ~~v~i~l 202 (289)
+..++++
T Consensus 108 e~aSl~~ 114 (284)
T 3chv_A 108 DMASLSV 114 (284)
T ss_dssp SEEEECC
T ss_pred CEEEecC
Confidence 5555555
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=87.23 E-value=1.8 Score=35.28 Aligned_cols=75 Identities=13% Similarity=0.091 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCc
Q 022946 126 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (289)
Q Consensus 126 ei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let 204 (289)
+..+.++.+.+.|++.+++..-+....+.. . . +.++.++ ..++.+....+..+.+.++.+.++|++.|.++.+.
T Consensus 33 d~~~~a~~~~~~Gad~i~v~~~d~~~~~~~-~---~-~~i~~i~~~~~ipv~v~ggI~~~~~~~~~l~~Gad~V~lg~~~ 107 (244)
T 1vzw_A 33 SPLEAALAWQRSGAEWLHLVDLDAAFGTGD-N---R-ALIAEVAQAMDIKVELSGGIRDDDTLAAALATGCTRVNLGTAA 107 (244)
T ss_dssp CHHHHHHHHHHTTCSEEEEEEHHHHHTSCC-C---H-HHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred CHHHHHHHHHHcCCCEEEEecCchhhcCCC-h---H-HHHHHHHHhcCCcEEEECCcCCHHHHHHHHHcCCCEEEECchH
Confidence 345555667789999998864211111211 1 2 5555665 45788888888888999999999999999988765
Q ss_pred h
Q 022946 205 S 205 (289)
Q Consensus 205 ~ 205 (289)
.
T Consensus 108 l 108 (244)
T 1vzw_A 108 L 108 (244)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=87.14 E-value=2.9 Score=34.01 Aligned_cols=75 Identities=12% Similarity=0.067 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCc
Q 022946 126 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (289)
Q Consensus 126 ei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let 204 (289)
+..+.++.+.+.|++.+++..-+....+.+ . . +.++.++ ..++.+....|..+.+.++.+.++|++.|.++.+.
T Consensus 32 d~~~~a~~~~~~Gad~i~v~~~d~~~~~~~-~---~-~~i~~i~~~~~ipv~v~ggi~~~~~~~~~l~~Gad~V~lg~~~ 106 (244)
T 2y88_A 32 SAVDAALGWQRDGAEWIHLVDLDAAFGRGS-N---H-ELLAEVVGKLDVQVELSGGIRDDESLAAALATGCARVNVGTAA 106 (244)
T ss_dssp EHHHHHHHHHHTTCSEEEEEEHHHHTTSCC-C---H-HHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred CHHHHHHHHHHcCCCEEEEEcCcccccCCC-h---H-HHHHHHHHhcCCcEEEECCCCCHHHHHHHHHcCCCEEEECchH
Confidence 345555667788999998864221122222 1 2 5555555 45788888888888999999999999999988755
Q ss_pred h
Q 022946 205 S 205 (289)
Q Consensus 205 ~ 205 (289)
.
T Consensus 107 l 107 (244)
T 2y88_A 107 L 107 (244)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=87.13 E-value=5.6 Score=32.43 Aligned_cols=73 Identities=15% Similarity=0.151 Sum_probs=52.5
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCc
Q 022946 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (289)
Q Consensus 128 ~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let 204 (289)
.+.++.+.+.|++.+.+...+... .......+.++.++ ..++++....|..+.+.++.+.++|+|.|.++-..
T Consensus 33 ~~~a~~~~~~Gad~i~v~d~~~~~----~~~~~~~~~i~~i~~~~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg~~~ 106 (253)
T 1thf_D 33 VELGKFYSEIGIDELVFLDITASV----EKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAA 106 (253)
T ss_dssp HHHHHHHHHTTCCEEEEEESSCSS----SHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEESHHH
T ss_pred HHHHHHHHHcCCCEEEEECCchhh----cCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHH
Confidence 444566678899998886532111 13345567777777 45788888888888999999999999999887644
|
| >2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B* | Back alignment and structure |
|---|
Probab=87.10 E-value=13 Score=31.60 Aligned_cols=134 Identities=12% Similarity=0.122 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-cCceEEEeCCC----CCHHHHHHHHHcCCC---
Q 022946 125 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGM----LEKHQAIELKKAGLT--- 196 (289)
Q Consensus 125 eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~~~~i~~~~g~----l~~e~l~~L~~aG~~--- 196 (289)
+.+.+.++...+.|.+-|-+++....+...+...++..+.++.+.+ .++.+.+ .++ .+.+.+++-.++|.+
T Consensus 74 ~~~~~~A~~~v~~GAdiIDIg~~StrP~~~~vs~eee~~vV~~v~~~~~vplsI-~DT~~~~~~~~V~eaal~aga~~k~ 152 (310)
T 2h9a_B 74 NDPVAWAKKCVEYGADIVALRLVSAHPDGQNRSGAELAEVCKAVADAIDVPLMI-IGCGVEEKDAEIFPVIGEALSGRNC 152 (310)
T ss_dssp TCHHHHHHHHHHTTCSEEEEECGGGCTTTTCCCHHHHHHHHHHHHHHCSSCEEE-ECCSCHHHHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHcCCcEEEEeCccCCCCCCCCCHHHHHHHHHHHHHhCCceEEE-ECCCCCCCCHHHHHHHHHhCCCCCC
Confidence 6778888888899999999987554454444556777778887774 4555533 034 678888888888876
Q ss_pred eEe-cCCCchHHHHhccC---------CCCCHHHHHHHHHHHHHcCC---ceeecEEeec-CCCHHHHHHHHHHHhc
Q 022946 197 AYN-HNLDTSREFYSKII---------TTRSYDERLETLKHVREAGI---NVCSGGIIGL-GEAEEDRVGLLHTLAT 259 (289)
Q Consensus 197 ~v~-i~let~~~~~~~i~---------~~~~~~~~~~~i~~~~~~Gi---~v~~~~i~Gl-get~ed~~~~l~~l~~ 259 (289)
-|+ ++.+..+++.+... ...+.+...+.++.+.++|+ ++..+-.+|. |-+.+.-...++.++.
T Consensus 153 iINdvs~~~~~~~~~~aa~~g~~vv~m~~~dv~~l~~~~~~a~~~Gi~~e~IilDPg~g~~g~~~e~~~~~l~~ir~ 229 (310)
T 2h9a_B 153 LLSSATKDNYKPIVATCMVHGHSVVASAPLDINLSKQLNIMIMEMNLAPNRIIMDPLIGALGYGIEYSYSIIERMRL 229 (310)
T ss_dssp EEEEECTTTHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHTTTCCGGGEEEECCCCCTTTTHHHHHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHhCCCEEEEChhHHHHHHHHHHHHHHCCCChhhEEEeCCCccccCchHhHHHHHHHHHH
Confidence 343 44443355443221 11256777888888999999 3666666674 7555544344555444
|
| >3no5_A Uncharacterized protein; PFAM DUF849 domain containing protein, structural genomics, center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=87.10 E-value=5.6 Score=33.29 Aligned_cols=58 Identities=24% Similarity=0.275 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCc-hhHHHHHHHHHHHHh-c-CceEEEeCC
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-TNFNQILEYVKDIRD-M-GMEVCCTLG 180 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~-~~~~~l~e~i~~ik~-~-~~~i~~~~g 180 (289)
-.+++||.+.+.++.+.|..-+++-. +++-|.+ ...+.+.++++.+++ . ++-+..|.|
T Consensus 26 PvTpeEia~~A~~~~~AGAaivHlHv--Rd~~G~~s~d~~~~~e~~~~IR~~~pd~ii~~Ttg 86 (275)
T 3no5_A 26 PITVSEQVESTQAAFEAGATLVHLHV--RNDDETPTSNPDRFALVLEGIRKHAPGMITQVSTG 86 (275)
T ss_dssp CCSHHHHHHHHHHHHHHTCCEEEECE--ECTTSCEECCHHHHHHHHHHHHHHSTTCEEEECCC
T ss_pred CCCHHHHHHHHHHHHHccCcEEEEee--cCCCCCcCCCHHHHHHHHHHHHHhCCCeEEEeCCC
Confidence 37899999999999999999888844 3333554 455677888888874 3 566655543
|
| >3c6c_A 3-keto-5-aminohexanoate cleavage enzyme; DUF849 family protein, TIM beta/alpha-barrel fold, structura genomics; HET: MSE; 1.72A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=86.84 E-value=10 Score=32.31 Aligned_cols=81 Identities=17% Similarity=0.158 Sum_probs=50.4
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCC-CCCc-hhHHHHHHHHHHHHhc--
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDT-IGRK-TNFNQILEYVKDIRDM-- 171 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~-~ge~-~~~~~l~e~i~~ik~~-- 171 (289)
...|-..|.-+... ..+...+.--.+++||.+.+.++.+.|..-+++-. +++ .|.+ ...+.+.+++..+++.
T Consensus 21 ~~kviIt~A~tGa~--~t~~~~P~lPvTpeEIa~~A~~a~~AGAaivHlHv--Rd~~~G~ps~d~~~y~e~~~~IR~~~~ 96 (316)
T 3c6c_A 21 SRKVILTCAVTGNA--PFNPKHPSMPITPAQIADACVEAAKAGASVAHIHV--RDPKTGGGSRDPVLFKEVVDRVRSSGT 96 (316)
T ss_dssp CCEECEEEECCCSS--CCCTTSTTCCCSHHHHHHHHHHHHHHTCSEEEECE--ECTTTCCEECCHHHHHHHHHHHHTTTC
T ss_pred CCCeEEEEecCCCc--CCccCCCCCCCCHHHHHHHHHHHHHcCCcEEEEee--cCCCCCCcCCCHHHHHHHHHHHHHHCC
Confidence 33455555544332 11222333337899999999999999999988844 332 3444 4667788888888854
Q ss_pred CceEEEeCC
Q 022946 172 GMEVCCTLG 180 (289)
Q Consensus 172 ~~~i~~~~g 180 (289)
++-+..|.|
T Consensus 97 d~ii~~TTg 105 (316)
T 3c6c_A 97 DIVLNLTCG 105 (316)
T ss_dssp CCEEEEECC
T ss_pred CeEEEeCCC
Confidence 555554444
|
| >3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri} | Back alignment and structure |
|---|
Probab=86.83 E-value=12 Score=32.30 Aligned_cols=125 Identities=14% Similarity=0.163 Sum_probs=65.9
Q ss_pred HHHHHcCCcEEEEecccCCCCCCchhH----HHHHHHHHHHHhc----CceE-EEeCCCCCHHHHHHHHHcCCCeEecCC
Q 022946 132 QKAKEAGSTRFCMGAAWRDTIGRKTNF----NQILEYVKDIRDM----GMEV-CCTLGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 132 ~~~~~~g~~~i~i~~~~~~~~ge~~~~----~~l~e~i~~ik~~----~~~i-~~~~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
+...+.|++.|.+...+........+. +++.++++.+++. ++.+ +...|. ...++.|.+.|+|.+++.-
T Consensus 194 ~~~~~aGad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~~~~~ii~~~~g~--~~~l~~l~~~g~d~i~~d~ 271 (354)
T 3cyv_A 194 NAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLRENDGRRVPVTLFTKGG--GQWLEAMAETGCDALGLDW 271 (354)
T ss_dssp HHHHHTTCSEEEEECTTGGGSCHHHHHHHTHHHHHHHHHHSCSEETTEECCEEEECTTT--TTTHHHHHTTSCSEEECCT
T ss_pred HHHHHhCCCEEEEeCCccccCCHHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEECCCH--HHHHHHHHhcCCCEEEeCC
Confidence 344467998887755433323322222 4444455555543 2443 333333 4578899999999998643
Q ss_pred Cch-HHHHhccCCC-------------CCHHHHHHHHHHHHHc-CCceeecEEeecC-----C-CHHHHHHHHHHHhcC
Q 022946 203 DTS-REFYSKIITT-------------RSYDERLETLKHVREA-GINVCSGGIIGLG-----E-AEEDRVGLLHTLATL 260 (289)
Q Consensus 203 et~-~~~~~~i~~~-------------~~~~~~~~~i~~~~~~-Gi~v~~~~i~Glg-----e-t~ed~~~~l~~l~~l 260 (289)
... .+..+.+..+ .+.+++.+.++.+.+. |- ..++|+++| + ..|.+..+++.++++
T Consensus 272 ~~dl~~~~~~~g~~~~l~Gn~dp~~l~~t~e~i~~~v~~~l~~~g~--~~g~I~~~g~gi~~~~p~env~a~v~~v~~~ 348 (354)
T 3cyv_A 272 TTDIADARRRVGNKVALQGNMDPSMLYAPPARIEEEVATILAGFGH--GEGHVFNLGHGIHQDVPPEHAGVFVEAVHRL 348 (354)
T ss_dssp TSCHHHHHHHHTTTSEEECCBCGGGGGSCHHHHHHHHHHHHTTTTT--SSCEEBCBSSCCCTTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCeEEEecCChHHhCCCHHHHHHHHHHHHHHhCC--CCCeEEecCCCCCCCCCHHHHHHHHHHHHHH
Confidence 232 4443333211 1456666666665443 42 124555443 2 356666666666554
|
| >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A | Back alignment and structure |
|---|
Probab=86.54 E-value=3.3 Score=33.81 Aligned_cols=80 Identities=15% Similarity=0.133 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCC-CCCch-------------hHHHHHHHHHHHHhc-CceEEEeCCCCC----
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDT-IGRKT-------------NFNQILEYVKDIRDM-GMEVCCTLGMLE---- 183 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~-~ge~~-------------~~~~l~e~i~~ik~~-~~~i~~~~g~l~---- 183 (289)
+.++..+.++.+.+. ++.+.++--..++ ...+. ......+.++.+++. .+.+..-.+ .+
T Consensus 17 ~~~~~~~~a~~~~~~-ad~iel~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~~~~pv~~~~~-~~~~~~ 94 (248)
T 1geq_A 17 DKQSTLNFLLALDEY-AGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTY-YNPIYR 94 (248)
T ss_dssp CHHHHHHHHHHHGGG-BSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCEEEEEC-HHHHHH
T ss_pred CHHHHHHHHHHHHHc-CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCCCEEEEec-cchhhh
Confidence 447888888888777 8888886210011 11111 345567888888743 444432211 22
Q ss_pred ---HHHHHHHHHcCCCeEecCCCc
Q 022946 184 ---KHQAIELKKAGLTAYNHNLDT 204 (289)
Q Consensus 184 ---~e~l~~L~~aG~~~v~i~let 204 (289)
.+.++.+.++|++.+.++-..
T Consensus 95 ~~~~~~~~~~~~~Gad~v~~~~~~ 118 (248)
T 1geq_A 95 AGVRNFLAEAKASGVDGILVVDLP 118 (248)
T ss_dssp HCHHHHHHHHHHHTCCEEEETTCC
T ss_pred cCHHHHHHHHHHCCCCEEEECCCC
Confidence 578899999999999987543
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=86.46 E-value=10 Score=31.87 Aligned_cols=123 Identities=14% Similarity=0.095 Sum_probs=72.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-c---CceEEEeCCC-CCHHHHHHHHHcCCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-M---GMEVCCTLGM-LEKHQAIELKKAGLT 196 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~---~~~i~~~~g~-l~~e~l~~L~~aG~~ 196 (289)
.+++++.+.++.+.+.|++.+.+.. +.|- ..-..+.++++.+++ . .+.++.+++. +-......-.++|++
T Consensus 152 ~~~~~~~~~~~~~~~~G~d~i~l~D----t~G~-~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~an~l~Ai~aG~~ 226 (295)
T 1ydn_A 152 VTPQAVASVTEQLFSLGCHEVSLGD----TIGR-GTPDTVAAMLDAVLAIAPAHSLAGHYHDTGGRALDNIRVSLEKGLR 226 (295)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEEE----TTSC-CCHHHHHHHHHHHHTTSCGGGEEEEEBCTTSCHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHhcCCCEEEecC----CCCC-cCHHHHHHHHHHHHHhCCCCeEEEEECCCcchHHHHHHHHHHhCCC
Confidence 4789999999999999999998863 1221 122445555555552 2 2445554332 333444455578999
Q ss_pred eEecCCCch-HHHHhccCCC-CCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcC
Q 022946 197 AYNHNLDTS-REFYSKIITT-RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATL 260 (289)
Q Consensus 197 ~v~i~let~-~~~~~~i~~~-~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l 260 (289)
.|..++.+. +--|..-+.+ -..++++..++ +.|+.+ |-+.+.+.+..+++.++
T Consensus 227 ~vd~sv~GlG~cp~a~g~~GN~~~e~lv~~l~---~~g~~~--------~id~~~l~~~~~~~~~~ 281 (295)
T 1ydn_A 227 VFDASVGGLGGCPFAPGAKGNVDTVAVVEMLH---EMGFET--------GLDLDRLRSAGLFTQAL 281 (295)
T ss_dssp EEEEBTTCCSCBTTBTTSCCBCBHHHHHHHHH---HTTCBC--------CCCHHHHHHHHHHHHHH
T ss_pred EEEeccccCCCCCCCCCCcCChhHHHHHHHHH---hcCCCC--------CcCHHHHHHHHHHHHHH
Confidence 999988664 2112211222 35777777654 456654 23456666666666543
|
| >3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=86.11 E-value=15 Score=31.16 Aligned_cols=80 Identities=14% Similarity=0.098 Sum_probs=53.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-cCceEEEeCCCCCHHHHHHHHH--cCCCeE
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKK--AGLTAY 198 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~~~~i~~~~g~l~~e~l~~L~~--aG~~~v 198 (289)
.+.+.+++.++...+.|.+-+-++++. ....+...+.+++..++.+++ .++.+.+ .+...+++++-.+ +|.+-|
T Consensus 34 ~~~~~a~~~A~~~v~~GAdiIDIg~g~-~~v~~~eem~rvv~~i~~~~~~~~vpisI--DT~~~~V~eaaL~~~~Ga~iI 110 (300)
T 3k13_A 34 KKYDEALSIARQQVEDGALVIDVNMDD-GLLDARTEMTTFLNLIMSEPEIARVPVMI--DSSKWEVIEAGLKCLQGKSIV 110 (300)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEEECCC-TTSCHHHHHHHHHHHHHTCHHHHTSCEEE--ECSCHHHHHHHHHHCSSCCEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCC-CCCCHHHHHHHHHHHHHHhhhcCCCeEEE--eCCCHHHHHHHHHhcCCCCEE
Confidence 578999999999999999988887642 223334566777777776542 3444433 3466788766666 687766
Q ss_pred e-cCCCc
Q 022946 199 N-HNLDT 204 (289)
Q Consensus 199 ~-i~let 204 (289)
+ ++.+.
T Consensus 111 NdIs~~~ 117 (300)
T 3k13_A 111 NSISLKE 117 (300)
T ss_dssp EEECSTT
T ss_pred EeCCccc
Confidence 5 55543
|
| >1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A* | Back alignment and structure |
|---|
Probab=85.95 E-value=14 Score=30.65 Aligned_cols=134 Identities=13% Similarity=0.177 Sum_probs=72.8
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHc--CCCeEe
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKA--GLTAYN 199 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~a--G~~~v~ 199 (289)
.+.+.+++.++...+.|.+-+-++++. ....++..+.+++..++. ..++.+ +..+.+.+++++-.++ |.+-|+
T Consensus 22 ~~~~~a~~~a~~~v~~GAdiIDIg~g~-~~v~~~ee~~rvv~~i~~--~~~~pi--sIDT~~~~v~~aAl~a~~Ga~iIN 96 (262)
T 1f6y_A 22 RDPAPVQEWARRQEEGGARALDLNVGP-AVQDKVSAMEWLVEVTQE--VSNLTL--CLDSTNIKAIEAGLKKCKNRAMIN 96 (262)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEEBCC-----CHHHHHHHHHHHHHT--TCCSEE--EEECSCHHHHHHHHHHCSSCEEEE
T ss_pred CCHHHHHHHHHHHHHCCCcEEEECCCC-CCCChHHHHHHHHHHHHH--hCCCeE--EEeCCCHHHHHHHHhhCCCCCEEE
Confidence 588999999999999999988887632 122223334444444433 224443 3344567777666665 766665
Q ss_pred -cCCCchH--HHHhcc----------CC-----CCCHHH----HHHHHHHHHHcCCc---eeecEEee-cCCCHHHHHHH
Q 022946 200 -HNLDTSR--EFYSKI----------IT-----TRSYDE----RLETLKHVREAGIN---VCSGGIIG-LGEAEEDRVGL 253 (289)
Q Consensus 200 -i~let~~--~~~~~i----------~~-----~~~~~~----~~~~i~~~~~~Gi~---v~~~~i~G-lget~ed~~~~ 253 (289)
++...-+ ++.+.+ +. +.+.++ ..+.++.+.++|+. +..+-.+| +|-+.++-.++
T Consensus 97 dvs~~~d~~~~~~~~~a~~~~~vvlmh~~~~G~p~t~~~~~~~~~~~~~~a~~~Gi~~~~IilDPg~g~~g~~~~~~~~~ 176 (262)
T 1f6y_A 97 STNAEREKVEKLFPLAVEHGAALIGLTMNKTGIPKDSDTRLAFAMELVAAADEFGLPMEDLYIDPLILPANVAQDHAPEV 176 (262)
T ss_dssp EECSCHHHHHHHHHHHHHTTCEEEEESCCSSCSCSSHHHHHHHHHHHHHHHHHHTCCGGGEEEECCCCCTTTCTTHHHHH
T ss_pred ECCCCcccHHHHHHHHHHhCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCcccEEEeCCCCcCCCChHHHHHH
Confidence 4432111 222211 10 123333 35566678889994 66665556 45555545555
Q ss_pred HHHHhcC
Q 022946 254 LHTLATL 260 (289)
Q Consensus 254 l~~l~~l 260 (289)
++.+..+
T Consensus 177 l~~l~~l 183 (262)
T 1f6y_A 177 LKTLQQI 183 (262)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
|
| >3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=85.93 E-value=2.9 Score=35.90 Aligned_cols=109 Identities=11% Similarity=0.053 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCC----CCchhH-HHHHHHHHHHHhcCceEEEeCCCCCHHHHHHH---HH
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI----GRKTNF-NQILEYVKDIRDMGMEVCCTLGMLEKHQAIEL---KK 192 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~----ge~~~~-~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L---~~ 192 (289)
.++.++.++.++.+.+.|++.|.++... .+. +.+... .+.++.++.++...+...+.+.....+.++.+ .+
T Consensus 20 ~~~~~~k~~ia~~L~~aGv~~IEvg~~~-~p~~~f~~~~~~~~~e~l~~i~~~~~~~~~~L~r~~~~~~~dv~~~~~a~~ 98 (320)
T 3dxi_A 20 DFNSKIVDAYILAMNELPIDYLEVGYRN-KPSKEYMGKFGYTPVSVLKHLRNISTKKIAIMLNEKNTTPEDLNHLLLPII 98 (320)
T ss_dssp CCCHHHHHHHHHHHHTTTCCEEEEEECC-SCCSSCCCHHHHCCHHHHHHHHHHCCSEEEEEEEGGGCCGGGHHHHHGGGT
T ss_pred cCCHHHHHHHHHHHHHhCCCEEEEeccc-CCccccccccccChHHHHHHHhhccCCeEEEEecCCCCChhhHHHHHHhhh
Confidence 3899999999999999999998876421 111 111111 22223333322222223333221222234444 34
Q ss_pred cCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEe
Q 022946 193 AGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGII 241 (289)
Q Consensus 193 aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~ 241 (289)
+|++.+.+.... +..+...+.++.+++.|+.+...+..
T Consensus 99 ~Gvd~~ri~~~~-----------~nle~~~~~v~~ak~~G~~v~~~~~~ 136 (320)
T 3dxi_A 99 GLVDMIRIAIDP-----------QNIDRAIVLAKAIKTMGFEVGFNVMY 136 (320)
T ss_dssp TTCSEEEEEECG-----------GGHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred cCCCEEEEEecH-----------HHHHHHHHHHHHHHHCCCEEEEEEEe
Confidence 688887765311 23777888888888888877655543
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=85.88 E-value=14 Score=30.56 Aligned_cols=78 Identities=13% Similarity=0.258 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCC-Cch-------------hHHHHHHHHHHHHhc--CceEEEeCCCCC---
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG-RKT-------------NFNQILEYVKDIRDM--GMEVCCTLGMLE--- 183 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~g-e~~-------------~~~~l~e~i~~ik~~--~~~i~~~~g~l~--- 183 (289)
+.++.++.++.+.+.|++.+.++.-..+|.. .|. ..+.++++++.+++. .+.+..- ++.+
T Consensus 29 ~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m-~y~n~v~ 107 (262)
T 2ekc_A 29 DYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLM-TYYNPIF 107 (262)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEE-CCHHHHH
T ss_pred ChHHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEE-ecCcHHH
Confidence 5577788888899999999988542212211 011 124577788888844 5665431 2222
Q ss_pred ----HHHHHHHHHcCCCeEecC
Q 022946 184 ----KHQAIELKKAGLTAYNHN 201 (289)
Q Consensus 184 ----~e~l~~L~~aG~~~v~i~ 201 (289)
++.++.++++|++.+.+.
T Consensus 108 ~~g~~~f~~~~~~aG~dgvii~ 129 (262)
T 2ekc_A 108 RIGLEKFCRLSREKGIDGFIVP 129 (262)
T ss_dssp HHCHHHHHHHHHHTTCCEEECT
T ss_pred HhhHHHHHHHHHHcCCCEEEEC
Confidence 566788999999988764
|
| >1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A* | Back alignment and structure |
|---|
Probab=85.84 E-value=17 Score=31.57 Aligned_cols=125 Identities=14% Similarity=0.126 Sum_probs=69.1
Q ss_pred HHHHHHcCCcEEEEecccCCCCCCc----hhHHHHHHHHHHHH-hc------CceE-EEeCCCCCHHHHHHHHHcCCCeE
Q 022946 131 AQKAKEAGSTRFCMGAAWRDTIGRK----TNFNQILEYVKDIR-DM------GMEV-CCTLGMLEKHQAIELKKAGLTAY 198 (289)
Q Consensus 131 ~~~~~~~g~~~i~i~~~~~~~~ge~----~~~~~l~e~i~~ik-~~------~~~i-~~~~g~l~~e~l~~L~~aG~~~v 198 (289)
++...+.|++-|.+...+....... ...+++.++++.++ +. ++.+ .-..|. ...++.|.+.|+|.+
T Consensus 203 ~~~~i~aGad~i~i~D~~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~~g~~~~p~i~~~~G~--~~~l~~l~~~g~d~i 280 (367)
T 1r3s_A 203 LVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLREAGLAPVPMIIFAKDG--HFALEELAQAGYEVV 280 (367)
T ss_dssp HHHHHHTTCSEEEEEETTGGGSCHHHHHHHTHHHHHHHHHHHHHHHHHTTCCCCCEEEEETTC--GGGHHHHTTSSCSEE
T ss_pred HHHHHHhCCCEEEEecCccccCCHHHHHHHhHHHHHHHHHHHhhhhccccCCCCCeEEEcCCc--HHHHHHHHhcCCCEE
Confidence 3334467998887755443332222 22255556666676 44 3543 334554 567899999999988
Q ss_pred ecCCCch-HHHHhccCCC-------------CCHHHHHHHHHHHHH-cCCceeecEEeecC------CCHHHHHHHHHHH
Q 022946 199 NHNLDTS-REFYSKIITT-------------RSYDERLETLKHVRE-AGINVCSGGIIGLG------EAEEDRVGLLHTL 257 (289)
Q Consensus 199 ~i~let~-~~~~~~i~~~-------------~~~~~~~~~i~~~~~-~Gi~v~~~~i~Glg------et~ed~~~~l~~l 257 (289)
++.-... .+..+.+..+ .+.+++.+.++.+.+ .|- .++|+++| -..|.+..+++.+
T Consensus 281 ~~d~~~dl~~a~~~~g~~~~l~Gnldp~~L~gt~e~i~~~v~~~l~~~g~---~g~I~~~ghgi~~~~p~env~a~v~~v 357 (367)
T 1r3s_A 281 GLDWTVAPKKARECVGKTVTLQGNLDPCALYASEEEIGQLVKQMLDDFGP---HRYIANLGHGLYPDMDPEHVGAFVDAV 357 (367)
T ss_dssp ECCTTSCHHHHHHHHCSSSEEEEEECGGGGGSCHHHHHHHHHHHHHHHCS---SSEEEEESSCCCTTCCHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHcCCCeEEEeCCChHHhcCCHHHHHHHHHHHHHHhCC---CCeeecCCCCCCCCCCHHHHHHHHHHH
Confidence 7743232 4444433211 256777766666544 352 25565543 2446666666666
Q ss_pred hcC
Q 022946 258 ATL 260 (289)
Q Consensus 258 ~~l 260 (289)
++.
T Consensus 358 ~~~ 360 (367)
T 1r3s_A 358 HKH 360 (367)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >3lot_A Uncharacterized protein; protein of unknown function, structural genomics, joint CENT structural genomics, JCSG; HET: MSE; 1.89A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=85.82 E-value=12 Score=31.94 Aligned_cols=80 Identities=25% Similarity=0.290 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCC-CCCc-hhHHHHHHHHHHHHh-cCceEEEeCC-C--C--C-HHHHHHHH
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDT-IGRK-TNFNQILEYVKDIRD-MGMEVCCTLG-M--L--E-KHQAIELK 191 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~-~ge~-~~~~~l~e~i~~ik~-~~~~i~~~~g-~--l--~-~e~l~~L~ 191 (289)
-.+++||.+.+.++.+.|..-+++-. +++ .|.| ...+.+.+++..+++ .++-+..|.| . . + ++.+..+.
T Consensus 28 PvTpeEia~~A~~~~~AGAaivHlHv--Rdp~dG~ps~d~~~y~e~i~~IR~~~d~iI~~TTgg~~~~~~~~eeR~~~~~ 105 (314)
T 3lot_A 28 PVTPDQIVEEAVKAAEAGAGMVHIHA--RDPKDGRPTTDVEVFRYICREIKKQSDVVINVTTGGGGTLGIPVEERAKVVP 105 (314)
T ss_dssp CCSHHHHHHHHHHHHHHTCSEEEECE--ECTTTCCEECCHHHHHHHHHHHHHHCCCEEEECSSTTGGGTCCHHHHTTHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEee--cCCCCCCcCCCHHHHHHHHHHHHhcCCeEEEeCCCCcCCCCCCHHHHHHHHH
Confidence 37999999999999999999888844 332 2444 455667777777773 4555555543 2 2 2 34444454
Q ss_pred HcCCCeEecCC
Q 022946 192 KAGLTAYNHNL 202 (289)
Q Consensus 192 ~aG~~~v~i~l 202 (289)
+..-+..++++
T Consensus 106 ~~~Pe~aSln~ 116 (314)
T 3lot_A 106 ALKPEIATFNM 116 (314)
T ss_dssp HHCCSEEEEEC
T ss_pred hcCCceeeecC
Confidence 54445444433
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=85.81 E-value=4.2 Score=35.31 Aligned_cols=81 Identities=14% Similarity=0.034 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCC-CchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcC-CCeE
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG-RKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAG-LTAY 198 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~g-e~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG-~~~v 198 (289)
.+.++.++.++.+.+.|++.+.+..+...... .+..-....+.++.++ ..++.+..+.|..+.+.++++.+.| +|.|
T Consensus 236 ~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e~a~~~l~~G~aD~V 315 (349)
T 3hgj_A 236 WSLEDTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKRVGLRTGAVGLITTPEQAETLLQAGSADLV 315 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCCHHHHHHHHHTTSCSEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCcCcccccCCCccccHHHHHHHHHHcCceEEEECCCCCHHHHHHHHHCCCceEE
Confidence 36677788888888888888877632211100 0000011234445555 3466776666666788888888877 8888
Q ss_pred ecCC
Q 022946 199 NHNL 202 (289)
Q Consensus 199 ~i~l 202 (289)
.++=
T Consensus 316 ~iGR 319 (349)
T 3hgj_A 316 LLGR 319 (349)
T ss_dssp EEST
T ss_pred EecH
Confidence 7764
|
| >3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=85.51 E-value=13 Score=32.15 Aligned_cols=96 Identities=16% Similarity=0.177 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEec
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 200 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i 200 (289)
.+.+..++.++++.+.|++-|-+.- |. ++-.+.++.++ ...+++.... .++...+.+-.++|++.+.+
T Consensus 43 ~D~~atv~Qi~~l~~aG~diVRvav--------p~--~~~a~al~~I~~~~~vPlvaDi-Hf~~~lal~a~e~G~dklRI 111 (366)
T 3noy_A 43 HDVEATLNQIKRLYEAGCEIVRVAV--------PH--KEDVEALEEIVKKSPMPVIADI-HFAPSYAFLSMEKGVHGIRI 111 (366)
T ss_dssp TCHHHHHHHHHHHHHTTCCEEEEEC--------CS--HHHHHHHHHHHHHCSSCEEEEC-CSCHHHHHHHHHTTCSEEEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCC--------CC--hHHHHHHHHHHhcCCCCEEEeC-CCCHHHHHHHHHhCCCeEEE
Confidence 6889999999999999998887753 11 23356677776 4455554332 36677777777778887665
Q ss_pred CCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeec
Q 022946 201 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSG 238 (289)
Q Consensus 201 ~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~ 238 (289)
+--.. .+.+++.+.++.+++.|+.+..+
T Consensus 112 NPGNi----------g~~~~~~~vv~~ak~~~~piRIG 139 (366)
T 3noy_A 112 NPGNI----------GKEEIVREIVEEAKRRGVAVRIG 139 (366)
T ss_dssp CHHHH----------SCHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCccc----------CchhHHHHHHHHHHHcCCCEEEe
Confidence 54111 12455667777788888766443
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=85.46 E-value=7.3 Score=30.64 Aligned_cols=93 Identities=14% Similarity=0.091 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--CceEEEeCCCCC--HHHHHHHHHcCCCe
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLE--KHQAIELKKAGLTA 197 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~i~~~~g~l~--~e~l~~L~~aG~~~ 197 (289)
.+.++.++.++.+.+ |++.+.++. +.+...=.+.++.+++. +..+.......+ +..++.+.++|.|.
T Consensus 10 ~~~~~~~~~~~~~~~-~v~~iev~~--------~~~~~~g~~~i~~l~~~~~~~~i~~~l~~~di~~~~~~~a~~~Gad~ 80 (207)
T 3ajx_A 10 LSTEAALELAGKVAE-YVDIIELGT--------PLIKAEGLSVITAVKKAHPDKIVFADMKTMDAGELEADIAFKAGADL 80 (207)
T ss_dssp SCHHHHHHHHHHHGG-GCSEEEECH--------HHHHHHCTHHHHHHHHHSTTSEEEEEEEECSCHHHHHHHHHHTTCSE
T ss_pred CCHHHHHHHHHHhhc-cCCEEEECc--------HHHHhhCHHHHHHHHHhCCCCeEEEEEEecCccHHHHHHHHhCCCCE
Confidence 467888888888877 778777743 11223334456666643 555544333333 34489999999999
Q ss_pred EecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCce
Q 022946 198 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINV 235 (289)
Q Consensus 198 v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v 235 (289)
+.+..+..+ +...++++.+++.|+.+
T Consensus 81 v~vh~~~~~------------~~~~~~~~~~~~~g~~~ 106 (207)
T 3ajx_A 81 VTVLGSADD------------STIAGAVKAAQAHNKGV 106 (207)
T ss_dssp EEEETTSCH------------HHHHHHHHHHHHHTCEE
T ss_pred EEEeccCCh------------HHHHHHHHHHHHcCCce
Confidence 987654431 22234445556666653
|
| >3e02_A Uncharacterized protein DUF849; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia xenovorans LB400} | Back alignment and structure |
|---|
Probab=85.29 E-value=17 Score=31.01 Aligned_cols=79 Identities=18% Similarity=0.277 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCC-CCCc-hhHHHHHHHHHHHHh-cCceEEEeCC-C--C-CHHHHHHHHHc
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDT-IGRK-TNFNQILEYVKDIRD-MGMEVCCTLG-M--L-EKHQAIELKKA 193 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~-~ge~-~~~~~l~e~i~~ik~-~~~~i~~~~g-~--l-~~e~l~~L~~a 193 (289)
-.+++||.+.+.++.+.|..-+++-. +++ .|.+ ...+.+.+++..+++ ..+-+..|.| . . .++.+..+.+.
T Consensus 28 PvTpeEia~~A~~~~~AGAaivHlHv--Rdp~dG~ps~d~~~~~e~~~~IR~~~d~iI~~TTgg~~~~~~eerla~~~~~ 105 (311)
T 3e02_A 28 PITPEEIVKEGVAAAEAGAAMLHLHA--RDPLNGRPSQDPDLFMRFLPQLKERTDAILNITTGGGLGMSLDERLAPARAA 105 (311)
T ss_dssp CCSHHHHHHHHHHHHHHTCSEEEECE--ECTTTCCEECCHHHHTTTHHHHHHHCCCEEEECSSCSTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEee--cCCCCCCcCCCHHHHHHHHHHHHHhCCcEEEECCCCCCCCCHHHHHHHHHhc
Confidence 37899999999999999999888844 332 2444 355677777777773 4444443432 2 2 34455656554
Q ss_pred CCCeEecC
Q 022946 194 GLTAYNHN 201 (289)
Q Consensus 194 G~~~v~i~ 201 (289)
.-+..+++
T Consensus 106 ~Pe~aSln 113 (311)
T 3e02_A 106 RPEVASMN 113 (311)
T ss_dssp CCSEEEEE
T ss_pred CCCeeeec
Confidence 45544443
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=85.18 E-value=12 Score=30.08 Aligned_cols=69 Identities=13% Similarity=0.160 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hc-CceEEEeCCCCCHHHHHHHHHcCCCeEe
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DM-GMEVCCTLGMLEKHQAIELKKAGLTAYN 199 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~-~~~i~~~~g~l~~e~l~~L~~aG~~~v~ 199 (289)
.+.++.++.++.+.+.|++-+-+.. .. +. -.+.++.++ +. .+.+.... .++.+.++...++|.|.+.
T Consensus 26 ~~~~~~~~~~~al~~gGv~~iel~~--k~----~~----~~~~i~~l~~~~~~l~vgaGt-vl~~d~~~~A~~aGAd~v~ 94 (224)
T 1vhc_A 26 DNADDILPLADTLAKNGLSVAEITF--RS----EA----AADAIRLLRANRPDFLIAAGT-VLTAEQVVLAKSSGADFVV 94 (224)
T ss_dssp SSGGGHHHHHHHHHHTTCCEEEEET--TS----TT----HHHHHHHHHHHCTTCEEEEES-CCSHHHHHHHHHHTCSEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEec--cC----ch----HHHHHHHHHHhCcCcEEeeCc-EeeHHHHHHHHHCCCCEEE
Confidence 4667788888899999999887753 11 11 233445444 22 23332222 4688999999999999997
Q ss_pred cC
Q 022946 200 HN 201 (289)
Q Consensus 200 i~ 201 (289)
.+
T Consensus 95 ~p 96 (224)
T 1vhc_A 95 TP 96 (224)
T ss_dssp CS
T ss_pred EC
Confidence 65
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=85.05 E-value=3.3 Score=33.80 Aligned_cols=74 Identities=16% Similarity=0.130 Sum_probs=52.2
Q ss_pred HHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCc
Q 022946 127 VMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (289)
Q Consensus 127 i~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let 204 (289)
..+.++.+.+.|++.+.+.+.... +. ......+.++.++ ..++++....|..+.+.++++.++|++.|.++-..
T Consensus 33 ~~~~a~~~~~~Gad~i~v~d~~~~--~~--~~~~~~~~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~ 107 (252)
T 1ka9_F 33 PVEAARAYDEAGADELVFLDISAT--HE--ERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAA 107 (252)
T ss_dssp HHHHHHHHHHHTCSCEEEEECCSS--TT--CHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEECHHH
T ss_pred HHHHHHHHHHcCCCEEEEEcCCcc--cc--CccccHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEChHH
Confidence 345555666789998887642211 11 2234566777777 45788888888889999999999999999887533
|
| >3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=85.00 E-value=4.4 Score=34.85 Aligned_cols=102 Identities=14% Similarity=0.169 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcC----ce--EEEe--CCCCCHHHHHHHHH
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMG----ME--VCCT--LGMLEKHQAIELKK 192 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~----~~--i~~~--~g~l~~e~l~~L~~ 192 (289)
.+++.+++.++.+.+.|++.|.+.+... ...| ..+.++++.++ ..+ +. ++.+ .|.-....+..+ +
T Consensus 148 ~~~~~~~~~~~~~~~~G~~~i~l~DT~G--~~~P---~~v~~lv~~l~~~~~~~~~~~i~~H~Hnd~GlA~AN~laA~-~ 221 (325)
T 3eeg_A 148 ADQAFLARMVEAVIEAGADVVNIPDTTG--YMLP---WQYGERIKYLMDNVSNIDKAILSAHCHNDLGLATANSLAAL-Q 221 (325)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEECCBSSS--CCCH---HHHHHHHHHHHHHCSCGGGSEEEECBCCTTSCHHHHHHHHH-H
T ss_pred chHHHHHHHHHHHHhcCCCEEEecCccC--CcCH---HHHHHHHHHHHHhCCCCCceEEEEEeCCCCCHHHHHHHHHH-H
Confidence 5788888888888889999888854110 1224 34445555544 222 33 3333 344333334433 4
Q ss_pred cCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHH-cCCc
Q 022946 193 AGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVRE-AGIN 234 (289)
Q Consensus 193 aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~-~Gi~ 234 (289)
+|++.|..++.+. . -...-..++++-.++...+ .|+.
T Consensus 222 aGa~~vd~tv~GlGe-----r~GN~~lE~vv~~L~~~~~~~g~~ 260 (325)
T 3eeg_A 222 NGARQVECTINGIGE-----RAGNTALEEVVMAMECHKETLGLE 260 (325)
T ss_dssp HTCCEEEEBGGGCCS-----TTCCCBHHHHHHHHHHTHHHHCEE
T ss_pred hCCCEEEEecccccc-----cccchhHHHHHHHHHhhhhccCCC
Confidence 7999998888775 3 1123357787777765432 4544
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=84.72 E-value=16 Score=30.35 Aligned_cols=78 Identities=10% Similarity=0.158 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCC-Cch-------------hHHHHHHHHHHHHh--cCceEEEeCCCC----
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG-RKT-------------NFNQILEYVKDIRD--MGMEVCCTLGML---- 182 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~g-e~~-------------~~~~l~e~i~~ik~--~~~~i~~~~g~l---- 182 (289)
+.+...+.++.+.+.|++-+.++--..+|.. .|. ..+.++++++.+++ ..+.+..- ++.
T Consensus 30 ~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~Pivlm-~Y~npv~ 108 (267)
T 3vnd_A 30 SPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLL-LYANLVF 108 (267)
T ss_dssp CHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCEEEE-ECHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEE-ecCcHHH
Confidence 5688888888999999998888632222221 121 12366888888884 34554221 111
Q ss_pred ---CHHHHHHHHHcCCCeEecC
Q 022946 183 ---EKHQAIELKKAGLTAYNHN 201 (289)
Q Consensus 183 ---~~e~l~~L~~aG~~~v~i~ 201 (289)
.++.++.++++|+|.+.+.
T Consensus 109 ~~g~e~f~~~~~~aGvdgvii~ 130 (267)
T 3vnd_A 109 ANGIDEFYTKAQAAGVDSVLIA 130 (267)
T ss_dssp HHCHHHHHHHHHHHTCCEEEET
T ss_pred HhhHHHHHHHHHHcCCCEEEeC
Confidence 2667899999999998764
|
| >1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2 | Back alignment and structure |
|---|
Probab=84.49 E-value=6.9 Score=30.79 Aligned_cols=93 Identities=24% Similarity=0.308 Sum_probs=55.4
Q ss_pred CHHHHHHHH-HHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceE-EEe-------CC--CCCHHHHHHHH
Q 022946 123 TKDAVMQAA-QKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEV-CCT-------LG--MLEKHQAIELK 191 (289)
Q Consensus 123 ~~eei~~~~-~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i-~~~-------~g--~l~~e~l~~L~ 191 (289)
..++.++.+ +++.+.|++.|++-+. .|+ .-..+++ .+ .++.+ .++ +| .++++..+.|.
T Consensus 27 NT~~tl~la~era~e~~Ik~iVVAS~----sG~--TA~k~~e---~~--~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~ 95 (201)
T 1vp8_A 27 NTEETLRLAVERAKELGIKHLVVASS----YGD--TAMKALE---MA--EGLEVVVVTYHTGFVREGENTMPPEVEEELR 95 (201)
T ss_dssp GHHHHHHHHHHHHHHHTCCEEEEECS----SSH--HHHHHHH---HC--TTCEEEEEECCTTSSSTTCCSSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCCEEEEEeC----CCh--HHHHHHH---Hh--cCCeEEEEeCcCCCCCCCCCcCCHHHHHHHH
Confidence 445555544 6778899999988652 342 1123333 23 33442 233 22 37999999999
Q ss_pred HcCCCeEec--CCCch-HHHHhccCCCCCHHHHHHHHH
Q 022946 192 KAGLTAYNH--NLDTS-REFYSKIITTRSYDERLETLK 226 (289)
Q Consensus 192 ~aG~~~v~i--~let~-~~~~~~i~~~~~~~~~~~~i~ 226 (289)
+.|+..+.. -+.+. ..+.+++.+-...+-+-++++
T Consensus 96 ~~G~~V~t~tH~lsgveR~is~kfGG~~p~eiiA~tLR 133 (201)
T 1vp8_A 96 KRGAKIVRQSHILSGLERSISRKLGGVSRTEAIAEALR 133 (201)
T ss_dssp HTTCEEEECCCTTTTTHHHHHHHTCCCCHHHHHHHHHH
T ss_pred hCCCEEEEEeccccchhHHHHHhcCCCCHHHHHHHHHH
Confidence 999987763 45555 445555544344555556666
|
| >3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=84.31 E-value=4.3 Score=34.35 Aligned_cols=120 Identities=14% Similarity=0.163 Sum_probs=67.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-cC------ceEEEe--CCCCCHHHHHHHHH
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MG------MEVCCT--LGMLEKHQAIELKK 192 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~~------~~i~~~--~g~l~~e~l~~L~~ 192 (289)
.+++.+.+.++.+.+.|++.|.+.+... ...|. .+.++++.+++ .. +.++.+ .|.-....+..+ +
T Consensus 147 ~~~~~~~~~~~~~~~~G~~~i~l~DT~G--~~~P~---~v~~lv~~l~~~~~~~~~~~l~~H~Hnd~Gla~AN~laA~-~ 220 (293)
T 3ewb_X 147 SDRAFLIEAVQTAIDAGATVINIPDTVG--YTNPT---EFGQLFQDLRREIKQFDDIIFASHCHDDLGMATANALAAI-E 220 (293)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEEECSSS--CCCHH---HHHHHHHHHHHHCTTGGGSEEEEECBCTTSCHHHHHHHHH-H
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCCC--CCCHH---HHHHHHHHHHHhcCCccCceEEEEeCCCcChHHHHHHHHH-H
Confidence 4778888888888889999888854111 12343 34444444442 21 334443 344333434443 4
Q ss_pred cCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHH-HcCCceeecEEeecCCCHHHHHHHHHHHhcC
Q 022946 193 AGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVR-EAGINVCSGGIIGLGEAEEDRVGLLHTLATL 260 (289)
Q Consensus 193 aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~-~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l 260 (289)
+|++.|..++.+. . -.+.-..++++-.++.-. ..|+.+ |-+.+.+.+..+++.++
T Consensus 221 aGa~~vd~sv~GlGe-----raGN~~~E~vv~~L~~~~~~~g~~t--------gidl~~L~~~s~~v~~~ 277 (293)
T 3ewb_X 221 NGARRVEGTINGIGE-----RAGNTALEEVAVALHIRKDFYQAET--------NIVLNQFKNSSDLISRL 277 (293)
T ss_dssp TTCCEEEEBGGGCCT-----TTCBCBHHHHHHHHHHTHHHHCEEE--------CCCGGGHHHHHHHHHHC
T ss_pred hCCCEEEeecccccc-----ccccHhHHHHHHHHHhhhhhcCCCC--------CCCHHHHHHHHHHHHHH
Confidence 7999998888776 4 112235777777776532 246543 22334555555555544
|
| >2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* | Back alignment and structure |
|---|
Probab=84.07 E-value=7.9 Score=39.36 Aligned_cols=133 Identities=8% Similarity=-0.040 Sum_probs=72.8
Q ss_pred CCHHHHHHHHHHHHHcC--CcEEEEecccCCC-----CCCchhHHHHHHHHHHHHhcCceEEEe----CCC------CCH
Q 022946 122 MTKDAVMQAAQKAKEAG--STRFCMGAAWRDT-----IGRKTNFNQILEYVKDIRDMGMEVCCT----LGM------LEK 184 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g--~~~i~i~~~~~~~-----~ge~~~~~~l~e~i~~ik~~~~~i~~~----~g~------l~~ 184 (289)
++.++.++.++.+.+.| +..+.+.|+..++ .+ ...++.+.++.+.+++..+..... .|+ ...
T Consensus 570 ~~~~dkl~ia~~L~~~gv~~~~iE~~gga~f~~~~~f~~-~~p~e~l~~~~~~~~~~~~~~l~R~~n~vg~~~~~~~~~~ 648 (1165)
T 2qf7_A 570 MRTYDIARIAGTYSHALPNLLSLECWGGATFDVSMRFLT-EDPWERLALIREGAPNLLLQMLLRGANGVGYTNYPDNVVK 648 (1165)
T ss_dssp CCHHHHHHHHHHHHHHCTTCSEEEEEETTHHHHHHHHHC-CCHHHHHHHHHHHCTTSEEEEEEETTTBTCSSCCCHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCceEEEeCCCCccHHHHhhcC-CCHHHHHHHHHHHchhhHHHHHhccccccccccCCchhHH
Confidence 88999999999999884 5556654332211 11 224455555555554322222222 132 124
Q ss_pred HHHHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec------C--CCHHHHHHHHHH
Q 022946 185 HQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL------G--EAEEDRVGLLHT 256 (289)
Q Consensus 185 e~l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl------g--et~ed~~~~l~~ 256 (289)
+.++...++|++.+.+.. +. ...+.....++.+++.|..+...+.+.. . .+.+.+.+.++.
T Consensus 649 ~~i~~a~~~g~d~irif~-sl----------~~~~~~~~~i~~~~~~g~~v~~~i~~~~~~~d~~r~~~~~~~~~~~~~~ 717 (1165)
T 2qf7_A 649 YFVRQAAKGGIDLFRVFD-CL----------NWVENMRVSMDAIAEENKLCEAAICYTGDILNSARPKYDLKYYTNLAVE 717 (1165)
T ss_dssp HHHHHHHHHTCCEEEEEC-TT----------CCGGGGHHHHHHHHHTTCEEEEEEECCSCTTCTTSGGGCHHHHHHHHHH
T ss_pred HHHHHHHhcCcCEEEEEe-eH----------HHHHHHHHHHHHHHhccceEEEEEEEeccccCCCCCCCCHHHHHHHHHH
Confidence 568888899999876632 11 1234555666666666655544433321 0 345556666666
Q ss_pred HhcCCCCCCeee
Q 022946 257 LATLPTHPESVP 268 (289)
Q Consensus 257 l~~l~~~~~~v~ 268 (289)
+.++ +.+.+.
T Consensus 718 ~~~~--Ga~~i~ 727 (1165)
T 2qf7_A 718 LEKA--GAHIIA 727 (1165)
T ss_dssp HHHT--TCSEEE
T ss_pred HHHc--CCCEEE
Confidence 6666 345443
|
| >4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme biosynthesis, structural GENO niaid; 1.65A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=83.98 E-value=19 Score=31.30 Aligned_cols=123 Identities=15% Similarity=0.178 Sum_probs=65.8
Q ss_pred HHHcCCcEEEEecccCCCCCCchhH----HHHHHHHHHHHhc----CceE-EEeCCCCCHHHHHHHHHcCCCeEecCCCc
Q 022946 134 AKEAGSTRFCMGAAWRDTIGRKTNF----NQILEYVKDIRDM----GMEV-CCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (289)
Q Consensus 134 ~~~~g~~~i~i~~~~~~~~ge~~~~----~~l~e~i~~ik~~----~~~i-~~~~g~l~~e~l~~L~~aG~~~v~i~let 204 (289)
..+.|++-|.+...+........+. +++.++++.+++. ++.+ ....|. ...++.|.+.|++.+++.-..
T Consensus 206 qi~aGad~i~ifDs~~~~Lsp~~f~ef~~Py~k~i~~~l~~~~~g~~~pvi~f~~g~--~~~l~~l~~~g~d~i~~d~~~ 283 (368)
T 4exq_A 206 QIEAGAQAVMIFDTWGGALADGAYQRFSLDYIRRVVAQLKREHDGARVPAIAFTKGG--GLWLEDLAATGVDAVGLDWTV 283 (368)
T ss_dssp HHHHTCSEEEEEETTGGGSCTTHHHHHTHHHHHHHHHTSCCEETTEECCEEEEETTC--GGGHHHHHTSSCSEEECCTTS
T ss_pred HHHhCCCEEEEeCCccccCCHHHHHHHhHHHHHHHHHHHHHhcCCCCCcEEEEcCCc--HHHHHHHHHhCCCEEeeCCCC
Confidence 3466999887755443333323333 4444555555532 2443 333443 466888999999998764322
Q ss_pred h-HHHHhccCCC-------------CCHHHHHHHHHHHHH-cCCceeecEEeecC------CCHHHHHHHHHHHhcC
Q 022946 205 S-REFYSKIITT-------------RSYDERLETLKHVRE-AGINVCSGGIIGLG------EAEEDRVGLLHTLATL 260 (289)
Q Consensus 205 ~-~~~~~~i~~~-------------~~~~~~~~~i~~~~~-~Gi~v~~~~i~Glg------et~ed~~~~l~~l~~l 260 (289)
. .+..+.+... .+.+++.+.++.+.+ .|- ..++|+++| -..|.+..+++.+++.
T Consensus 284 dl~~ak~~~g~~~~l~Gnldp~~L~gt~e~I~~~v~~~l~~~g~--~~g~I~n~Ghgi~p~tp~Env~a~veav~~~ 358 (368)
T 4exq_A 284 NLGRARERVAGRVALQGNLDPTILFAPPEAIRAEARAVLDSYGN--HPGHVFNLGHGISQFTPPEHVAELVDEVHRH 358 (368)
T ss_dssp CHHHHHHHHTTSSEEEEEECGGGGGSCHHHHHHHHHHHHHHHCS--CSCEEEEESSCCCTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCEEEEECCCHHHhCCCHHHHHHHHHHHHHHhCC--CCCEEEeCCCCCCCCcCHHHHHHHHHHHHHh
Confidence 2 3433333211 256777776666544 332 124455432 2456666676766654
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=83.92 E-value=7.9 Score=33.84 Aligned_cols=107 Identities=15% Similarity=0.118 Sum_probs=69.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCC------------CCC--CchhHHHHHHHHHHHH-hc--CceEEEeCCCCCH
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRD------------TIG--RKTNFNQILEYVKDIR-DM--GMEVCCTLGMLEK 184 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~------------~~g--e~~~~~~l~e~i~~ik-~~--~~~i~~~~g~l~~ 184 (289)
.+.+++.+.++.+.+.|++.|++...... .+| .+...+.-++.++.++ .. .+.+..+.|..+.
T Consensus 231 ~~~~~~~~ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~~~v~~~ipvI~~GGI~s~ 310 (367)
T 3zwt_A 231 LTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSG 310 (367)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCcccccccccccccccCCcCCcccchhHHHHHHHHHHHcCCCceEEEECCCCCH
Confidence 56778888888888999999887542210 010 1223455667777777 34 6888888999999
Q ss_pred HHHHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHH-HHHcCCc
Q 022946 185 HQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKH-VREAGIN 234 (289)
Q Consensus 185 e~l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~-~~~~Gi~ 234 (289)
+.+.++..+|.+.|.++=-. +++ ...-+.++.+.++. +.+.|+.
T Consensus 311 ~da~~~l~~GAd~V~vgra~---l~~---gP~~~~~i~~~l~~~m~~~G~~ 355 (367)
T 3zwt_A 311 QDALEKIRAGASLVQLYTAL---TFW---GPPVVGKVKRELEALLKEQGFG 355 (367)
T ss_dssp HHHHHHHHHTCSEEEESHHH---HHH---CTHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCEEEECHHH---Hhc---CcHHHHHHHHHHHHHHHHcCCC
Confidence 99988888999999876421 121 11234555555554 4456653
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=83.60 E-value=18 Score=29.95 Aligned_cols=79 Identities=13% Similarity=0.109 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCC-CCchh-------------HHHHHHHHHHHHhc--CceEEE-e--CCC--
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-GRKTN-------------FNQILEYVKDIRDM--GMEVCC-T--LGM-- 181 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~-ge~~~-------------~~~l~e~i~~ik~~--~~~i~~-~--~g~-- 181 (289)
+.++..+.++.+.+.|++.+.++.-..+|. ..|.. .....+.++.+++. .+.+.. . +..
T Consensus 29 ~~~~~~~~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~n~v~~ 108 (268)
T 1qop_A 29 GIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFN 108 (268)
T ss_dssp CHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcccHHHH
Confidence 457778888889899999998854221121 11111 34566788888844 455432 1 111
Q ss_pred -CCHHHHHHHHHcCCCeEecC
Q 022946 182 -LEKHQAIELKKAGLTAYNHN 201 (289)
Q Consensus 182 -l~~e~l~~L~~aG~~~v~i~ 201 (289)
-.++.++.+.++|++.+.+.
T Consensus 109 ~g~~~~~~~~~~aGadgii~~ 129 (268)
T 1qop_A 109 NGIDAFYARCEQVGVDSVLVA 129 (268)
T ss_dssp TCHHHHHHHHHHHTCCEEEET
T ss_pred hhHHHHHHHHHHcCCCEEEEc
Confidence 11577899999999988764
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=83.60 E-value=16 Score=29.37 Aligned_cols=93 Identities=19% Similarity=0.203 Sum_probs=55.0
Q ss_pred HHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCchHHH
Q 022946 130 AAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREF 208 (289)
Q Consensus 130 ~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~~~~ 208 (289)
.++.+.+.|++.+.+.+......+.... .+.++.++ ...+.+..+.|.-+.+.+.++.++|++.+.++= .+
T Consensus 159 ~~~~~~~~G~d~i~~~~~~~~g~~~~~~----~~~i~~l~~~~~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgs----al 230 (253)
T 1h5y_A 159 WAKEVEELGAGEILLTSIDRDGTGLGYD----VELIRRVADSVRIPVIASGGAGRVEHFYEAAAAGADAVLAAS----LF 230 (253)
T ss_dssp HHHHHHHHTCSEEEEEETTTTTTCSCCC----HHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESH----HH
T ss_pred HHHHHHhCCCCEEEEecccCCCCcCcCC----HHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCcHHHHHH----HH
Confidence 3445567799988775432111111112 23334444 246778888887777888888899999998763 22
Q ss_pred HhccCCCCCHHHHHHHHHHHHHcCCcee
Q 022946 209 YSKIITTRSYDERLETLKHVREAGINVC 236 (289)
Q Consensus 209 ~~~i~~~~~~~~~~~~i~~~~~~Gi~v~ 236 (289)
++ ....+ .+..+.+++.|+.+.
T Consensus 231 ~~---~~~~~---~~~~~~l~~~g~~~~ 252 (253)
T 1h5y_A 231 HF---RVLSI---AQVKRYLKERGVEVR 252 (253)
T ss_dssp HT---TSSCH---HHHHHHHHHTTCBCC
T ss_pred Hc---CCCCH---HHHHHHHHHcCCCCC
Confidence 22 12234 345555677888653
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=83.10 E-value=26 Score=31.81 Aligned_cols=117 Identities=13% Similarity=0.133 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-c-CceEEEeCCCCCHHHHHHHHHcCCCeEecCCC
Q 022946 126 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-M-GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLD 203 (289)
Q Consensus 126 ei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~-~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~le 203 (289)
+..+.++.+.+.|++.+.+.... | +...+.+.++.+++ . ++.+... ...+.+.++.+.++|+|.|.++..
T Consensus 229 ~~~~~a~~l~~aG~d~I~id~a~----g---~~~~~~~~v~~i~~~~p~~~Vi~g-~v~t~e~a~~l~~aGaD~I~vg~g 300 (490)
T 4avf_A 229 DTGERVAALVAAGVDVVVVDTAH----G---HSKGVIERVRWVKQTFPDVQVIGG-NIATAEAAKALAEAGADAVKVGIG 300 (490)
T ss_dssp THHHHHHHHHHTTCSEEEEECSC----C---SBHHHHHHHHHHHHHCTTSEEEEE-EECSHHHHHHHHHTTCSEEEECSS
T ss_pred chHHHHHHHhhcccceEEecccC----C---cchhHHHHHHHHHHHCCCceEEEe-eeCcHHHHHHHHHcCCCEEEECCC
Confidence 34556667778899988886421 2 12566777777774 3 4555442 246789999999999999998643
Q ss_pred ch-H---HHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec-CCCHHHHHHHHH
Q 022946 204 TS-R---EFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLH 255 (289)
Q Consensus 204 t~-~---~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-get~ed~~~~l~ 255 (289)
.. . +....+ ....++.+.+..+.+++.++++ |..= -.+.+|+.+.+.
T Consensus 301 ~Gs~~~t~~~~g~-g~p~~~~l~~v~~~~~~~~iPV----Ia~GGI~~~~di~kal~ 352 (490)
T 4avf_A 301 PGSICTTRIVAGV-GVPQISAIANVAAALEGTGVPL----IADGGIRFSGDLAKAMV 352 (490)
T ss_dssp CSTTCHHHHHTCB-CCCHHHHHHHHHHHHTTTTCCE----EEESCCCSHHHHHHHHH
T ss_pred CCcCCCccccCCC-CccHHHHHHHHHHHhccCCCcE----EEeCCCCCHHHHHHHHH
Confidence 22 1 111111 1124555556666566667664 3311 236788877765
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=82.85 E-value=4.8 Score=32.63 Aligned_cols=99 Identities=13% Similarity=0.154 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE-ecccCCCCCCchhHHHHHHHHHHHH--hcCceEEEeCCCCCHHHHHHHHHcCCCeEe
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNFNQILEYVKDIR--DMGMEVCCTLGMLEKHQAIELKKAGLTAYN 199 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i-~~~~~~~~ge~~~~~~l~e~i~~ik--~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~ 199 (289)
+...+.++++.+.+.|++.+++ .+.+.+ ...-..-..+++.++... ...+.+..-.. -..+.++.+.++|+|.|.
T Consensus 15 D~~~l~~~i~~l~~~g~d~~h~DVmDg~F-vpn~~~G~~~v~~ir~~~~~~~~~dvhLmv~-~p~~~i~~~~~aGad~it 92 (228)
T 3ovp_A 15 DLANLGAECLRMLDSGADYLHLDVMDGHF-VPNITFGHPVVESLRKQLGQDPFFDMHMMVS-KPEQWVKPMAVAGANQYT 92 (228)
T ss_dssp CGGGHHHHHHHHHHTTCSCEEEEEEBSSS-SSCBCBCHHHHHHHHHHHCSSSCEEEEEECS-CGGGGHHHHHHHTCSEEE
T ss_pred CchhHHHHHHHHHHcCCCEEEEEecCCCc-CcccccCHHHHHHHHHhhCCCCcEEEEEEeC-CHHHHHHHHHHcCCCEEE
Confidence 3445566777777888887766 322221 111112245555555442 22333322211 123468899999999999
Q ss_pred cCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCcee
Q 022946 200 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVC 236 (289)
Q Consensus 200 i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~ 236 (289)
+..|+.+ +..+.++.+++.|+++.
T Consensus 93 vH~Ea~~-------------~~~~~i~~i~~~G~k~g 116 (228)
T 3ovp_A 93 FHLEATE-------------NPGALIKDIRENGMKVG 116 (228)
T ss_dssp EEGGGCS-------------CHHHHHHHHHHTTCEEE
T ss_pred EccCCch-------------hHHHHHHHHHHcCCCEE
Confidence 9887631 23556666777777653
|
| >3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=82.51 E-value=11 Score=30.62 Aligned_cols=41 Identities=12% Similarity=0.076 Sum_probs=26.2
Q ss_pred HHHHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCce
Q 022946 185 HQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINV 235 (289)
Q Consensus 185 e~l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v 235 (289)
+..+.++++|+....++... . .+.+.+.+.++.+++.|.+.
T Consensus 65 ~~~~~l~~~gl~i~~~~~~~-~---------~~~~~~~~~i~~A~~lGa~~ 105 (257)
T 3lmz_A 65 AFHDKCAAHKVTGYAVGPIY-M---------KSEEEIDRAFDYAKRVGVKL 105 (257)
T ss_dssp HHHHHHHHTTCEEEEEEEEE-E---------CSHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHcCCeEEEEeccc-c---------CCHHHHHHHHHHHHHhCCCE
Confidence 34456666788655544311 1 46777888888888888763
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=82.41 E-value=13 Score=29.28 Aligned_cols=74 Identities=18% Similarity=0.062 Sum_probs=44.9
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--CceEEEeCCC-CCHH-HHHHHHHcCCCe
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGM-LEKH-QAIELKKAGLTA 197 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~i~~~~g~-l~~e-~l~~L~~aG~~~ 197 (289)
.+.++-++.++.+. .|++-+-++- |.....-.+.++.+++. +..+..+.-. ...+ .++.+.++|++.
T Consensus 10 ~~~~~~~~~~~~~~-~~~diie~G~--------p~~~~~g~~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~ 80 (211)
T 3f4w_A 10 LTLPEAMVFMDKVV-DDVDIIEVGT--------PFLIREGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADY 80 (211)
T ss_dssp CCHHHHHHHHHHHG-GGCSEEEECH--------HHHHHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSE
T ss_pred CCHHHHHHHHHHhh-cCccEEEeCc--------HHHHhccHHHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCE
Confidence 46778788887774 4666543321 22234445667777743 5565444222 1234 489999999999
Q ss_pred EecCCCc
Q 022946 198 YNHNLDT 204 (289)
Q Consensus 198 v~i~let 204 (289)
+.+....
T Consensus 81 v~v~~~~ 87 (211)
T 3f4w_A 81 VTVLGVT 87 (211)
T ss_dssp EEEETTS
T ss_pred EEEeCCC
Confidence 9986654
|
| >3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A* | Back alignment and structure |
|---|
Probab=82.12 E-value=22 Score=30.08 Aligned_cols=100 Identities=13% Similarity=0.069 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc-CceEEEe------CCCCCH-HHHHHHH--
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GMEVCCT------LGMLEK-HQAIELK-- 191 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~-~~~i~~~------~g~l~~-e~l~~L~-- 191 (289)
.+.+++.+.+..+.+.|++.|....|+....+ +..+.+-.++++.+++. ++.+.+. ...-+. ..++.|+
T Consensus 94 ~~~~~l~~~L~~~~~~GI~nILaLrGDpp~~~-~~~~~~A~dLv~~ir~~~~f~IgvA~yPE~Hp~a~~~~~d~~~Lk~K 172 (304)
T 3fst_A 94 ATPDELRTIARDYWNNGIRHIVALRGDLPPGS-GKPEMYASDLVTLLKEVADFDISVAAYPEVHPEAKSAQADLLNLKRK 172 (304)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEEECCCCC-------CCCHHHHHHHHHHHCCCEEEEEECTTCCTTCSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCCC-CCCCCCHHHHHHHHHHcCCCeEEEEeCCCcCCCCCCHHHHHHHHHHH
Confidence 36789999999999999999977665543322 22334556666666632 3443222 122232 2344444
Q ss_pred -HcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCc
Q 022946 192 -KAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGIN 234 (289)
Q Consensus 192 -~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~ 234 (289)
++|.+.+.-=+ -.+.+.+.+.++.+++.|+.
T Consensus 173 vdAGAdf~iTQ~------------ffD~~~~~~f~~~~r~~Gi~ 204 (304)
T 3fst_A 173 VDAGANRAITQF------------FFDVESYLRFRDRCVSAGID 204 (304)
T ss_dssp HHHTCCEEEECC------------CSCHHHHHHHHHHHHHTTCC
T ss_pred HHcCCCEEEeCc------------cCCHHHHHHHHHHHHhcCCC
Confidence 57998754211 12445555666666666653
|
| >2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 | Back alignment and structure |
|---|
Probab=81.66 E-value=18 Score=30.32 Aligned_cols=129 Identities=13% Similarity=0.101 Sum_probs=70.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecc--cCCCC-------CCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAA--WRDTI-------GRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKK 192 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~--~~~~~-------ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~ 192 (289)
...+.+++ .+++.|+.-+ +.-. +...+ -....++...++|+..++.++... ....+.+..+.|.+
T Consensus 108 ~~~g~~Le---~lk~~Gf~Gv-~N~ptvglidG~fr~~LEE~gm~~~~eve~I~~A~~~gL~Ti--~~v~~~eeA~amA~ 181 (286)
T 2p10_A 108 MVMSTFLR---ELKEIGFAGV-QNFPTVGLIDGLFRQNLEETGMSYAQEVEMIAEAHKLDLLTT--PYVFSPEDAVAMAK 181 (286)
T ss_dssp CCHHHHHH---HHHHHTCCEE-EECSCGGGCCHHHHHHHHHTTCCHHHHHHHHHHHHHTTCEEC--CEECSHHHHHHHHH
T ss_pred cCHHHHHH---HHHHhCCceE-EECCCcccccchhhhhHhhcCCCHHHHHHHHHHHHHCCCeEE--EecCCHHHHHHHHH
Confidence 36677774 4557787776 4211 00000 112467888889998888887532 23477999999999
Q ss_pred cCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCceeec--EEeec--CCCHHHHHHHHHHH
Q 022946 193 AGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSG--GIIGL--GEAEEDRVGLLHTL 257 (289)
Q Consensus 193 aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~--~i~Gl--get~ed~~~~l~~l 257 (289)
+|.|.|.+.+--. .+..- .....+.++-.+.++...++--.++.+ ++.+- -.+++|....++..
T Consensus 182 agpDiI~~h~glT~gglIG-~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gGpIstpeDv~~~l~~t 250 (286)
T 2p10_A 182 AGADILVCHMGLTTGGAIG-ARSGKSMDDCVSLINECIEAARTIRDDIIILSHGGPIANPEDARFILDSC 250 (286)
T ss_dssp HTCSEEEEECSCC----------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEESTTCCSHHHHHHHHHHC
T ss_pred cCCCEEEECCCCCCCCccc-CCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHhcC
Confidence 9999987654321 11111 112235555334444333322222222 23322 37889988888753
|
| >1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=81.63 E-value=19 Score=29.02 Aligned_cols=50 Identities=12% Similarity=0.146 Sum_probs=36.9
Q ss_pred HHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHH
Q 022946 187 AIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEED 249 (289)
Q Consensus 187 l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed 249 (289)
+.+++++|++.|.++.-- +...+.++-+.++.+++.|+.+ |+=.||+.|.
T Consensus 81 ~~~l~~~Ga~~Vllghse---------RR~~~~e~~~k~~~A~~~GL~~----ivcVge~~e~ 130 (225)
T 1hg3_A 81 PEAVKEAGAVGTLLNHSE---------NRMILADLEAAIRRAEEVGLMT----MVCSNNPAVS 130 (225)
T ss_dssp HHHHHHTTCCEEEESCGG---------GCCBHHHHHHHHHHHHHHTCEE----EEEESSHHHH
T ss_pred HHHHHHcCCCEEEECcch---------hcCCHHHHHHHHHHHHHCCCEE----EEEeCCHHHH
Confidence 789999999999987611 1234556788888999999976 5555776664
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=81.53 E-value=13 Score=32.87 Aligned_cols=125 Identities=18% Similarity=0.184 Sum_probs=68.5
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-cCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch-
Q 022946 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS- 205 (289)
Q Consensus 128 ~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~- 205 (289)
.+.++.+.+.|++.|++... .|.+ ..+.+.++.+++ .++.+... ...+.+.++.+.++|+|.|.++.+..
T Consensus 146 ~e~~~~lveaGvdvIvldta----~G~~---~~~~e~I~~ik~~~~i~Vi~g-~V~t~e~A~~a~~aGAD~I~vG~g~Gs 217 (400)
T 3ffs_A 146 IERAKLLVEAGVDVIVLDSA----HGHS---LNIIRTLKEIKSKMNIDVIVG-NVVTEEATKELIENGADGIKVGIGPGS 217 (400)
T ss_dssp CHHHHHHHHHTCSEEEECCS----CCSB---HHHHHHHHHHHTTCCCEEEEE-EECSHHHHHHHHHTTCSEEEECC----
T ss_pred HHHHHHHHHcCCCEEEEeCC----CCCc---ccHHHHHHHHHhcCCCeEEEe-ecCCHHHHHHHHHcCCCEEEEeCCCCc
Confidence 45566677789998877431 1222 456777787775 37766542 23678999999999999999876533
Q ss_pred HHHHhccCC-C-CCHHHHHHHHHHHHHcCCceeecEEe-ecCCCHHHHHHHHHHHhcCCCCCCeeeec
Q 022946 206 REFYSKIIT-T-RSYDERLETLKHVREAGINVCSGGII-GLGEAEEDRVGLLHTLATLPTHPESVPIN 270 (289)
Q Consensus 206 ~~~~~~i~~-~-~~~~~~~~~i~~~~~~Gi~v~~~~i~-Glget~ed~~~~l~~l~~l~~~~~~v~i~ 270 (289)
....+.... + ..+..+.+..+.+++.++++ |. |=--+.+|+...+. + +.+.|.+.
T Consensus 218 ~~~tr~~~g~g~p~~~al~~v~~~~~~~~IPV----IA~GGI~~~~di~kala----l--GAd~V~vG 275 (400)
T 3ffs_A 218 ICTTRIVAGVGVPQITAIEKCSSVASKFGIPI----IADGGIRYSGDIGKALA----V--GASSVMIG 275 (400)
T ss_dssp -----CCSCBCCCHHHHHHHHHHHHTTTTCCE----EEESCCCSHHHHHHHHT----T--TCSEEEEC
T ss_pred CcccccccccchhHHHHHHHHHHHHHhcCCCE----EecCCCCCHHHHHHHHH----c--CCCEEEEC
Confidence 111111111 1 12333444444444456654 22 11135677666553 4 35666554
|
| >1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=81.50 E-value=21 Score=29.46 Aligned_cols=109 Identities=13% Similarity=0.104 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCC--CCCc-hhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEe
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDT--IGRK-TNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYN 199 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~--~ge~-~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~ 199 (289)
+.+..++.++.+++.|++-+.++.....+ ++-. ...+.+..+.+..++.|+.+.++. ++.+.++.+.+. ++.+.
T Consensus 35 ~~e~a~~~a~~l~~~Ga~~vk~~~fkprts~~~~~g~~~egl~~l~~~~~~~Gl~~~te~--~d~~~~~~l~~~-vd~~k 111 (262)
T 1zco_A 35 SREQIMKVAEFLAEVGIKVLRGGAFKPRTSPYSFQGYGEKALRWMREAADEYGLVTVTEV--MDTRHVELVAKY-SDILQ 111 (262)
T ss_dssp CHHHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCEEEEEC--CCGGGHHHHHHH-CSEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEecccCCCcccccCccHHHHHHHHHHHHHcCCcEEEee--CCHHhHHHHHhh-CCEEE
Confidence 67999999999999999877665421101 0000 113444444444447899987765 567778888888 99999
Q ss_pred cCCCch--HHHHhccCC---------C--CCHHHHHHHHHHHHHcCCc
Q 022946 200 HNLDTS--REFYSKIIT---------T--RSYDERLETLKHVREAGIN 234 (289)
Q Consensus 200 i~let~--~~~~~~i~~---------~--~~~~~~~~~i~~~~~~Gi~ 234 (289)
++--.. ..+++.+.. + .+.++++++++.++..|-+
T Consensus 112 Iga~~~~n~~ll~~~a~~~kPV~lk~G~~~t~~e~~~Av~~i~~~Gn~ 159 (262)
T 1zco_A 112 IGARNSQNFELLKEVGKVENPVLLKRGMGNTIQELLYSAEYIMAQGNE 159 (262)
T ss_dssp ECGGGTTCHHHHHHHTTSSSCEEEECCTTCCHHHHHHHHHHHHTTTCC
T ss_pred ECcccccCHHHHHHHHhcCCcEEEecCCCCCHHHHHHHHHHHHHCCCC
Confidence 865443 444554432 2 2689999999999888863
|
| >1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana tabacum} SCOP: c.1.22.1 | Back alignment and structure |
|---|
Probab=81.33 E-value=25 Score=30.17 Aligned_cols=126 Identities=12% Similarity=0.152 Sum_probs=66.8
Q ss_pred HHHHHHHcCCcEEEEecccCCCCCCchh----HHHHHHHHHHHHhc--CceE-EEeCCCCCHHHHHHHHHcCCCeEecCC
Q 022946 130 AAQKAKEAGSTRFCMGAAWRDTIGRKTN----FNQILEYVKDIRDM--GMEV-CCTLGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 130 ~~~~~~~~g~~~i~i~~~~~~~~ge~~~----~~~l~e~i~~ik~~--~~~i-~~~~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
.++...+.|++.+.+...+........+ .+.+.++++.+++. ++.+ +...|. ...++.|.+.|++.+++.-
T Consensus 198 ~~~~~~~aGad~iqi~D~~~~~lsp~~f~ef~~p~~~~i~~~i~~~~~~~~~ih~c~g~--~~~l~~l~~~g~d~~~~d~ 275 (353)
T 1j93_A 198 YIRYQADSGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKLTHPNLPLILYASGS--GGLLERLPLTGVDVVSLDW 275 (353)
T ss_dssp HHHHHHHTTCSEEEEECGGGGGSCHHHHHHHTHHHHHHHHHHHHHHSTTCCEEEECSSC--TTTGGGGGGGCCSEEECCT
T ss_pred HHHHHHHhCCCEEEEeCcccccCCHHHHHHHhHHHHHHHHHHHHHhCCCCCEEEECCCh--HHHHHHHHhcCCCEEEeCC
Confidence 3344456799888775544222221122 24555556666643 4443 322232 3457788899999887654
Q ss_pred Cch-HHHHhccCCC-------------CCHHHHHHHHHHHHH-cCCceeecEEeecC------CCHHHHHHHHHHHhcC
Q 022946 203 DTS-REFYSKIITT-------------RSYDERLETLKHVRE-AGINVCSGGIIGLG------EAEEDRVGLLHTLATL 260 (289)
Q Consensus 203 et~-~~~~~~i~~~-------------~~~~~~~~~i~~~~~-~Gi~v~~~~i~Glg------et~ed~~~~l~~l~~l 260 (289)
... .+..+.+... .+.+++.+.++.+.+ .|- .++|+++| ..++.+..+++.+++.
T Consensus 276 ~~d~~~~~~~~g~~~~l~Gnldp~~l~~~~e~i~~~v~~~l~~~~~---~g~I~~~g~gi~~~~~~enl~a~ve~v~~~ 351 (353)
T 1j93_A 276 TVDMADGRRRLGPNVAIQGNVDPGVLFGSKEFITNRINDTVKKAGK---GKHILNLGHGIKVGTPEENFAHFFEIAKGL 351 (353)
T ss_dssp TSCHHHHHHHTCSSSEEECCBCGGGGGSCHHHHHHHHHHHHHHHCS---SSEEBCBSSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHcCCCeEEEecCCHHHHcCCHHHHHHHHHHHHHHhCC---CCEEEeCCCCCCCCCCHHHHHHHHHHHHHh
Confidence 333 4444433211 146777776666544 353 25555442 3446666666666554
|
| >2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=81.29 E-value=30 Score=31.20 Aligned_cols=93 Identities=14% Similarity=0.195 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hc--CceEEEe--CCCCCHHHHHHHHHcCCCe
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DM--GMEVCCT--LGMLEKHQAIELKKAGLTA 197 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~--~~~i~~~--~g~l~~e~l~~L~~aG~~~ 197 (289)
+++.+++.++.+.+.|++.|+|..... ...| ..+.++++.++ .. .+.++++ .|.-....+. -.++|++.
T Consensus 156 ~~e~~~~~a~~l~~~Gad~I~l~DT~G--~~~P---~~v~~lv~~l~~~~~~~i~~H~Hnd~GlAvAN~la-Av~AGa~~ 229 (464)
T 2nx9_A 156 NLQTWVDVAQQLAELGVDSIALKDMAG--ILTP---YAAEELVSTLKKQVDVELHLHCHSTAGLADMTLLK-AIEAGVDR 229 (464)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEETTS--CCCH---HHHHHHHHHHHHHCCSCEEEEECCTTSCHHHHHHH-HHHTTCSE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEcCCCC--CcCH---HHHHHHHHHHHHhcCCeEEEEECCCCChHHHHHHH-HHHhCCCE
Confidence 778999999999999999999864111 1224 34445555554 22 3344444 3443333343 44689999
Q ss_pred EecCCCch-HHHHhccCCCCCHHHHHHHHH
Q 022946 198 YNHNLDTS-REFYSKIITTRSYDERLETLK 226 (289)
Q Consensus 198 v~i~let~-~~~~~~i~~~~~~~~~~~~i~ 226 (289)
|..++.+. +. ...-+.+.++..++
T Consensus 230 VD~ti~g~ger-----tGN~~lE~lv~~L~ 254 (464)
T 2nx9_A 230 VDTAISSMSGT-----YGHPATESLVATLQ 254 (464)
T ss_dssp EEEBCGGGCST-----TSCCBHHHHHHHHT
T ss_pred EEEeccccCCC-----CcCHHHHHHHHHHH
Confidence 99888764 31 22234555555544
|
| >2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel, eight parallel beta strands surrounded by eight alpha helices, lyase; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=81.15 E-value=26 Score=30.21 Aligned_cols=127 Identities=14% Similarity=0.155 Sum_probs=68.1
Q ss_pred HHHHHHHcCCcEEEEecccCCCCCCchh----HHHHHHHHHHHHhcCceE-EEeCCCCCHHHHHHHHHcCCCeEecCCCc
Q 022946 130 AAQKAKEAGSTRFCMGAAWRDTIGRKTN----FNQILEYVKDIRDMGMEV-CCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (289)
Q Consensus 130 ~~~~~~~~g~~~i~i~~~~~~~~ge~~~----~~~l~e~i~~ik~~~~~i-~~~~g~l~~e~l~~L~~aG~~~v~i~let 204 (289)
.++...+.|++.|.+...+........+ .+.+.++++.+++.++.+ ....|. ...++.|.+.|+|.+++.-..
T Consensus 198 ~~~~~~~aGad~i~i~D~~~~~lsp~~f~ef~~p~~~~i~~~i~~~g~~~i~~~~G~--~~~l~~l~~~g~d~~~~d~~~ 275 (359)
T 2inf_A 198 YVKAQIKAGAKAIQIFDSWVGALNQADYRTYIKPVMNRIFSELAKENVPLIMFGVGA--SHLAGDWHDLPLDVVGLDWRL 275 (359)
T ss_dssp HHHHHHHTTCSEEEEECTTGGGSCHHHHHHHTHHHHHHHHHHHGGGCSCEEEECTTC--GGGHHHHHTSSCSEEECCTTS
T ss_pred HHHHHHHhCCCEEEEeCCccccCCHHHHHHHhHHHHHHHHHHHHHcCCcEEEEcCCc--HHHHHHHHHhCCCEEEeCCCC
Confidence 3444456799888775544322221122 245555566666556553 333454 557889999999988774333
Q ss_pred h-HHHHhccCC-----C--------CCHHHHHHHHHHHHHcCCceeecEEeecC------CCHHHHHHHHHHHhcC
Q 022946 205 S-REFYSKIIT-----T--------RSYDERLETLKHVREAGINVCSGGIIGLG------EAEEDRVGLLHTLATL 260 (289)
Q Consensus 205 ~-~~~~~~i~~-----~--------~~~~~~~~~i~~~~~~Gi~v~~~~i~Glg------et~ed~~~~l~~l~~l 260 (289)
. .+..+. .. + .+.+++.+.++.+.+.|.. ..++|+++| ..++.+..+++.+++.
T Consensus 276 d~~~~~~~-g~~~~l~Gnldp~~l~~t~e~I~~~v~~~l~~~~~-~~g~Il~~gcgi~~~~~~enl~a~ve~v~~~ 349 (359)
T 2inf_A 276 GIDEARSK-GITKTVQGNLDPSILLAPWEVIEQKTKEILDQGME-SDGFIFNLGHGVFPDVSPEVLKKLTAFVHEY 349 (359)
T ss_dssp CHHHHHHT-TCCSEEECCBCGGGGGSCHHHHHHHHHHHHHHHTT-SSCEEBCBSSCCCTTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHc-CCCEEEEecCChHHhcCCHHHHHHHHHHHHHhCCC-CCCeEEeCCCCCCCCcCHHHHHHHHHHHHHh
Confidence 3 444332 11 1 1467777766665544321 014555442 3445666666655543
|
| >3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A* | Back alignment and structure |
|---|
Probab=80.94 E-value=16 Score=32.19 Aligned_cols=108 Identities=11% Similarity=0.038 Sum_probs=68.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCC-CC--chhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEe
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-GR--KTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYN 199 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~-ge--~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~ 199 (289)
+.+...+.++.+++.|++-+.++.-...+. +. -...+.+..+.+..++.|+.+.++. ++.+.++.+.+. ++.+.
T Consensus 154 s~e~a~~~a~~~k~aGa~~vk~q~fkprts~~~f~gl~~egl~~L~~~~~~~Gl~~~te~--~d~~~~~~l~~~-vd~lk 230 (385)
T 3nvt_A 154 SYEQVAAVAESIKAKGLKLIRGGAFKPRTSPYDFQGLGLEGLKILKRVSDEYGLGVISEI--VTPADIEVALDY-VDVIQ 230 (385)
T ss_dssp CHHHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCEEEEEC--CSGGGHHHHTTT-CSEEE
T ss_pred CHHHHHHHHHHHHHcCCCeEEcccccCCCChHhhcCCCHHHHHHHHHHHHHcCCEEEEec--CCHHHHHHHHhh-CCEEE
Confidence 788999999999999998776654211010 00 0123555444443447899987765 667788888887 99998
Q ss_pred cCCCc-h-HHHHhccCC---------C--CCHHHHHHHHHHHHHcCC
Q 022946 200 HNLDT-S-REFYSKIIT---------T--RSYDERLETLKHVREAGI 233 (289)
Q Consensus 200 i~let-~-~~~~~~i~~---------~--~~~~~~~~~i~~~~~~Gi 233 (289)
++--. . ..+++.+.. + .+.+++..+++.+.+.|-
T Consensus 231 Igs~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn 277 (385)
T 3nvt_A 231 IGARNMQNFELLKAAGRVDKPILLKRGLSATIEEFIGAAEYIMSQGN 277 (385)
T ss_dssp ECGGGTTCHHHHHHHHTSSSCEEEECCTTCCHHHHHHHHHHHHTTTC
T ss_pred ECcccccCHHHHHHHHccCCcEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 86433 2 334433321 1 356777777777777764
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.86 E-value=24 Score=29.61 Aligned_cols=129 Identities=12% Similarity=0.004 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCC-C-CCHHHHHHHHHcCCCeEec
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG-M-LEKHQAIELKKAGLTAYNH 200 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g-~-l~~e~l~~L~~aG~~~v~i 200 (289)
..+.+.+.++.+.+.|++.|+|+.-. +-| ....+.+.++++..+..++.++.... . -..+.++.|.+.|+++|..
T Consensus 109 E~~~M~~dI~~~~~~GAdGvVfG~L~--~dg-~iD~~~~~~Li~~a~~l~vTFHRAFD~~~d~~~Ale~Li~lGvdrILT 185 (287)
T 3iwp_A 109 EIEVMKADIRLAKLYGADGLVFGALT--EDG-HIDKELCMSLMAICRPLPVTFHRAFDMVHDPMAALETLLTLGFERVLT 185 (287)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEECCBC--TTS-CBCHHHHHHHHHHHTTSCEEECGGGGGCSCHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeeeC--CCC-CcCHHHHHHHHHHcCCCcEEEECchhccCCHHHHHHHHHHcCCCEEEC
Confidence 34666778888889999999986411 112 34667888888776654443321111 1 1345689999999999986
Q ss_pred CCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeecc
Q 022946 201 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINA 271 (289)
Q Consensus 201 ~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~ 271 (289)
+=.... . ....+.+.+.++. ++- ...++.|=|-+.+.+.+.++.. +.+.+.+..
T Consensus 186 SG~~~~-a------~~Gl~~Lk~Lv~~---a~~--rI~ImaGGGV~~~Ni~~l~~~t-----G~~~~H~S~ 239 (287)
T 3iwp_A 186 SGCDSS-A------LEGLPLIKRLIEQ---AKG--RIVVMPGGGITDRNLQRILEGS-----GATEFHCSA 239 (287)
T ss_dssp CTTSSS-T------TTTHHHHHHHHHH---HTT--SSEEEECTTCCTTTHHHHHHHH-----CCSEEEECC
T ss_pred CCCCCC-h------HHhHHHHHHHHHH---hCC--CCEEEECCCcCHHHHHHHHHhh-----CCCEEeECc
Confidence 432110 0 1122333333222 232 2345776676777666665533 345555544
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=80.14 E-value=16 Score=32.81 Aligned_cols=80 Identities=10% Similarity=0.130 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCC----------CC--CchhHHHHHHHHHHHHh-c--CceEEEeCCCCCHHH
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDT----------IG--RKTNFNQILEYVKDIRD-M--GMEVCCTLGMLEKHQ 186 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~----------~g--e~~~~~~l~e~i~~ik~-~--~~~i~~~~g~l~~e~ 186 (289)
++.+++.+.++.+.+.|++-|++.+..... +| .+...+..++.++.+++ . .+.+....|..+.+.
T Consensus 308 ~~~ed~~~iA~~~~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~~iPVIg~GGI~s~~D 387 (443)
T 1tv5_A 308 LNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLD 387 (443)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcCCCCcEEEECCCCCHHH
Confidence 566788889999999999999886532210 01 01123445677777773 4 688888899999999
Q ss_pred HHHHHHcCCCeEecC
Q 022946 187 AIELKKAGLTAYNHN 201 (289)
Q Consensus 187 l~~L~~aG~~~v~i~ 201 (289)
+.++..+|.+.|.++
T Consensus 388 A~e~l~aGAd~Vqig 402 (443)
T 1tv5_A 388 ALEKIEAGASVCQLY 402 (443)
T ss_dssp HHHHHHTTEEEEEES
T ss_pred HHHHHHcCCCEEEEc
Confidence 988889999988875
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 289 | ||||
| d1r30a_ | 312 | c.1.28.1 (A:) Biotin synthase {Escherichia coli [T | 1e-52 |
| >d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: Biotin synthase domain: Biotin synthase species: Escherichia coli [TaxId: 562]
Score = 172 bits (436), Expect = 1e-52
Identities = 133/234 (56%), Positives = 168/234 (71%), Gaps = 2/234 (0%)
Query: 50 RHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQS 109
R W+ + +++ P+LDLLF QVHR + R+VQ TLLSIKTG C EDC YCPQS
Sbjct: 1 RPRWTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQS 60
Query: 110 SRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169
SRY TG++ ++LM + V+++A+KAK AGSTRFCMGAAW++ + + + + V+ ++
Sbjct: 61 SRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNP--HERDMPYLEQMVQGVK 118
Query: 170 DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVR 229
MG+E C TLG L + QA L AGL YNHNLDTS EFY IITTR+Y ERL+TL+ VR
Sbjct: 119 AMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVR 178
Query: 230 EAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ 283
+AGI VCSGGI+GLGE +DR GLL LA LPT PESVPIN L+ VKGTPL D
Sbjct: 179 DAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADN 232
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 289 | |||
| d1r30a_ | 312 | Biotin synthase {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1olta_ | 441 | Oxygen-independent coproporphyrinogen III oxidase | 99.82 | |
| d1tv8a_ | 327 | Molybdenum cofactor biosynthesis protein A MoaA {S | 99.74 | |
| d1ad1a_ | 264 | Dihydropteroate synthetase {Staphylococcus aureus | 95.58 | |
| d1nvma2 | 289 | 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic d | 94.54 | |
| d1m5wa_ | 242 | Pyridoxine 5'-phosphate synthase {Escherichia coli | 94.33 | |
| d1x7fa2 | 244 | Outer surface protein, N-terminal domain {Bacillus | 93.67 | |
| d1ajza_ | 282 | Dihydropteroate synthetase {Escherichia coli [TaxI | 93.31 | |
| d1tx2a_ | 273 | Dihydropteroate synthetase {Bacillus anthracis [Ta | 93.09 | |
| d1vp8a_ | 190 | Hypothetical protein AF0103 {Archaeoglobus fulgidu | 92.28 | |
| d1eyea_ | 270 | Dihydropteroate synthetase {Mycobacterium tubercul | 90.37 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 90.15 | |
| d1rpxa_ | 230 | D-ribulose-5-phosphate 3-epimerase {Potato (Solanu | 90.09 | |
| d1j6oa_ | 260 | Hypothetical protein TM0667 {Thermotoga maritima [ | 89.97 | |
| d1x5wa2 | 29 | Zinc finger protein 64, ZFP68 {Human (Homo sapiens | 89.66 | |
| d1yixa1 | 265 | Putative deoxyribonuclease YcfH {Escherichia coli | 88.44 | |
| d1tqja_ | 221 | D-ribulose-5-phosphate 3-epimerase {Synechocystis | 88.0 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 87.98 | |
| d1h1ya_ | 220 | D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa | 87.65 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 87.21 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 86.46 | |
| d1b5ta_ | 275 | Methylenetetrahydrofolate reductase {Escherichia c | 86.46 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 86.3 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 86.28 | |
| d1n7ka_ | 234 | Deoxyribose-phosphate aldolase DeoC {Archaeon Aero | 85.77 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 85.38 | |
| d1zzma1 | 259 | Putative deoxyribonuclease YjjV {Escherichia coli | 85.17 | |
| d2flia1 | 217 | D-ribulose-5-phosphate 3-epimerase {Streptococcus | 84.77 | |
| d1twda_ | 247 | Copper homeostasis protein CutC {Shigella flexneri | 84.66 | |
| d1nvma2 | 289 | 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic d | 84.05 | |
| d7reqa2 | 168 | Methylmalonyl-CoA mutase alpha subunit, C-terminal | 83.84 | |
| d1ud2a2 | 390 | Bacterial alpha-amylase {Bacillus sp., ksm-k38 [Ta | 83.82 | |
| d1qwga_ | 251 | (2r)-phospho-3-sulfolactate synthase ComA {Archaeo | 83.79 | |
| d1geqa_ | 248 | Trp synthase alpha-subunit {Archaeon Pyrococcus fu | 83.72 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 83.15 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 83.11 | |
| d1vlia2 | 295 | Spore coat polysaccharide biosynthesis protein Sps | 82.83 | |
| d2zdra2 | 280 | Capsule biosynthesis protein SiaC, N-terminal doma | 82.21 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 81.91 | |
| d1e0ta2 | 246 | Pyruvate kinase, N-terminal domain {Escherichia co | 81.53 | |
| d1a3xa2 | 265 | Pyruvate kinase, N-terminal domain {Baker's yeast | 81.51 | |
| d1ub3a_ | 211 | Deoxyribose-phosphate aldolase DeoC {Thermus therm | 80.91 | |
| d1gcya2 | 357 | G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase | 80.47 |
| >d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: Biotin synthase domain: Biotin synthase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.1e-39 Score=279.88 Aligned_cols=235 Identities=56% Similarity=0.972 Sum_probs=209.6
Q ss_pred CCCCHHHHHHhhCCChHHHHHHHHHHHHhhhCCCeeEEeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHH
Q 022946 51 HDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQA 130 (289)
Q Consensus 51 ~~ls~ee~~~l~~~~~~~l~~~a~~~~r~~~~g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~ 130 (289)
.+||+||+..|++.|+.||+..|++++++++.++.+++...+++.||+|+++|.||+++..++.....++.+++|+++++
T Consensus 2 ~r~s~ee~~~L~~~~~~dL~~~A~~v~r~~~~~~~~~~~~~~~~~TngC~~~C~fC~~~~~~~~~~~~~~~~~~e~i~~~ 81 (312)
T d1r30a_ 2 PRWTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLES 81 (312)
T ss_dssp CCCCSTTTHHHHHSCHHHHHHHHHHHHHHHSCTTCCEEEEEEEEECSCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHHHH
T ss_pred CCCCHHHHHHHHcCCHHHHHHHHHHHHHHHcCCCEEEEeeeeEeeCCCCCCcCCcCCCCccCCCCCccccccchHHHHHH
Confidence 68999999999999999999999999888877788888777766699999999999988655544445566899999999
Q ss_pred HHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCchHHHHh
Q 022946 131 AQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYS 210 (289)
Q Consensus 131 ~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~~~~~~ 210 (289)
++.+.+.|+.+++++++.... .+...+.+.++++.++...+.+.++.+.++.+.++.|+++|++.+.+++||.++.+.
T Consensus 82 ~~~~~~~G~~~~~~~~g~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~e~l~~lk~aG~~~i~~~iEs~~~~~~ 159 (312)
T d1r30a_ 82 ARKAKAAGSTRFCMGAAWKNP--HERDMPYLEQMVQGVKAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYG 159 (312)
T ss_dssp HHHHHHTTCSEEEEEECCSSC--CTTTHHHHHHHHHHHHHTTSEEEEECSSCCHHHHHHHHHHCCCEEECCCBSCHHHHH
T ss_pred HHHHHHcCCEEEEEccCCCCC--chhhHHHHHHHHHhcccccceeeeccccchHHHHHHhhcccceeEecccchhhhhhc
Confidence 999999999999998865432 235678999999988888888888999999999999999999999999999977888
Q ss_pred ccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCCCCC
Q 022946 211 KIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKLKY 287 (289)
Q Consensus 211 ~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~~~~ 287 (289)
.+.++.++++++++++.++++|+.+++++|+|+|||.+|+.+++..+++++.++..++++.+.|.|||||++.++++
T Consensus 160 ~~~~~~~~~~~~~~~~~a~~~Gi~~~~~~i~G~~et~~d~~~~l~~l~~l~~~~~~i~~~~~~p~~gT~l~~~~~~~ 236 (312)
T d1r30a_ 160 NIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVD 236 (312)
T ss_dssp HHCCSSCHHHHHHHHHHHHHHHCEEECCEEECSSCCHHHHHHHHHHHHSSSSCCSEEEEEECCCCTTSTTSSCCCCC
T ss_pred cCCCCCCHHHHHHHHHHHHHhccceecceEecCcCcHHHHHHHHHHHHhcCCCCCeeeeccccCCCCcccccccCCC
Confidence 88999999999999999999999999999999999999999999999998766788999999999999999988765
|
| >d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: Oxygen-independent coproporphyrinogen III oxidase HemN domain: Oxygen-independent coproporphyrinogen III oxidase HemN species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=2.7e-20 Score=168.17 Aligned_cols=183 Identities=14% Similarity=0.179 Sum_probs=137.5
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH----cCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE----AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM 171 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~----~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~ 171 (289)
.+.|+..|.||.+++.......... .-.+.+.++++.... ..+..+.++||..+.. .+..+..+++.++..-..
T Consensus 56 iPFC~~~C~yC~~~~~~~~~~~~~~-~Y~~~L~~Ei~~~~~~~~~~~v~~i~~GGGTPt~L-~~~~l~~ll~~l~~~~~~ 133 (441)
T d1olta_ 56 IPFCHKLCYFCGCNKIVTRQQHKAD-QYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYL-NKAQISRLMKLLRENFQF 133 (441)
T ss_dssp ECEESSCCTTCCSSCEECSCTHHHH-HHHHHHHHHHHHHGGGGTTCCEEEEEEEESCGGGS-CHHHHHHHHHHHHHHSCE
T ss_pred eCCCCCCCCCCcCeeecCCCcchHH-HHHHHHHHHHHHhhHhcCCCccceeEecCCCcCCC-CHHHHHHHHHHHhhhccc
Confidence 5789999999998653221111100 013555666654332 2356777777543322 233444555544432221
Q ss_pred ----CceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCc-eeecEEeec-C
Q 022946 172 ----GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGL-G 244 (289)
Q Consensus 172 ----~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~~i~Gl-g 244 (289)
.+.+.+++..++.+.+..|+++|++++++|+|++ +++++.+++.++.+++.++++.+++.|+. ++.++|+|+ |
T Consensus 134 ~~~~e~t~E~~P~~~~~~~l~~l~~~G~nRiSlGvQs~~~~vl~~i~R~~~~~~~~~~~~~~r~~g~~~vn~DLI~GlPg 213 (441)
T d1olta_ 134 NADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIGFTSTNIDLIYGLPK 213 (441)
T ss_dssp EEEEEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTTCCSCEEEEEESCTT
T ss_pred cchhcccccccccccchHHHHHHHHhCCceEEecchhcchhhhhhhhcCCCHHHHHHHHHHHHhcccceeecccccccCC
Confidence 1334567888999999999999999999999999 99999999999999999999999999996 999999999 9
Q ss_pred CCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 245 EAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 245 et~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
+|.+++.++++.+.++ +|+.+.++.|...|+|....
T Consensus 214 qT~~~~~~tl~~~~~l--~pd~is~y~~~~~p~~~~~q 249 (441)
T d1olta_ 214 QTPESFAFTLKRVAEL--NPDRLSVFNYAHLPTIFAAQ 249 (441)
T ss_dssp CCHHHHHHHHHHHHHH--CCSEEEEEECCCCTTTSGGG
T ss_pred cchHHHHHHHHHHHhh--CCCccccccceeccchhHhh
Confidence 9999999999999999 69999999999999876554
|
| >d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A MoaA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: MoCo biosynthesis proteins domain: Molybdenum cofactor biosynthesis protein A MoaA species: Staphylococcus aureus [TaxId: 1280]
Probab=99.74 E-value=7.9e-17 Score=139.58 Aligned_cols=162 Identities=22% Similarity=0.346 Sum_probs=130.6
Q ss_pred eccccCCCCcCCCCCCCCCCCCCC---CCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHH
Q 022946 92 LSIKTGGCSEDCSYCPQSSRYDTG---VKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDI 168 (289)
Q Consensus 92 i~~~t~~C~~~C~fC~~~~~~~~~---~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~i 168 (289)
|++ |+.||++|.||......... ..+...|+.|++.+.++.+.+.|+..+.+.| |||.....+.+++..+
T Consensus 16 iei-T~~CNlrC~~C~~~~~~~~~~~~~~~~~~ls~e~~~~li~~~~~~g~~~v~~~G------GEp~l~~~~~e~i~~~ 88 (327)
T d1tv8a_ 16 LSV-TDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITG------GEPLMRRDLDVLIAKL 88 (327)
T ss_dssp EEC-CSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHHTTCCEEEEES------SCGGGSTTHHHHHHHH
T ss_pred EEe-ccccCCcCcCCCCccccCCCCccCCccccCCHHHHHHHHHHHHHcCCeEEEeCC------CcccccccHHHHHHHH
Confidence 677 99999999999754322211 1223458999999999999999999988876 5677777888888776
Q ss_pred Hhc-Cc-e-EEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCC-CCCHHHHHHHHHHHHHcCCceeecEEeec
Q 022946 169 RDM-GM-E-VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT-TRSYDERLETLKHVREAGINVCSGGIIGL 243 (289)
Q Consensus 169 k~~-~~-~-i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~-~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl 243 (289)
... +. . +.++++.++++.++.|+++|++.+.+++++. ++.++.+++ +..++..++.++.++++|+.+...+++--
T Consensus 89 ~~~~~~~~~~~Tng~ll~~~~~~~l~~~g~~~i~iSldg~~~e~~~~~rg~~g~~~~~~~~~~~~~~~g~~~~~~~~v~~ 168 (327)
T d1tv8a_ 89 NQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQK 168 (327)
T ss_dssp TTCTTCCEEEEEECSTTHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHHTTCEEEEEEEECT
T ss_pred hhhccccccccccccccchhHHHHHHHcCCCEEeeecccCCHHHhhhheeeccccchhhhHHHHHHHcCCCcceeEEEec
Confidence 643 22 2 3456677899999999999999999999999 999999877 46899999999999999999887777644
Q ss_pred CCCHHHHHHHHHHHhcC
Q 022946 244 GEAEEDRVGLLHTLATL 260 (289)
Q Consensus 244 get~ed~~~~l~~l~~l 260 (289)
+.+..++.+.++++..+
T Consensus 169 ~~n~~~~~~~~~~~~~~ 185 (327)
T d1tv8a_ 169 GINDDQIIPMLEYFKDK 185 (327)
T ss_dssp TTTGGGHHHHHHHHHHT
T ss_pred CccccccHHHHHHHHhh
Confidence 77888888999998887
|
| >d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Staphylococcus aureus [TaxId: 1280]
Probab=95.58 E-value=0.24 Score=39.43 Aligned_cols=136 Identities=13% Similarity=0.157 Sum_probs=89.0
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCc----hhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCC
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK----TNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~----~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~ 196 (289)
..+.+..++.++.+.+.|++-|=++|-...|+..+ ..++++...++.+++.++ .++..+...+++++..++|++
T Consensus 22 ~~~~~~a~~~~~~m~~~GAdiIDIGaeSTrPga~~is~~eE~~Rl~pvi~~l~~~~~--~iSIDT~~~eVa~~al~~Ga~ 99 (264)
T d1ad1a_ 22 FNNVESAVTRVKAMMDEGADIIDVGGVSTRPGHEMITVEEELNRVLPVVEAIVGFDV--KISVDTFRSEVAEACLKLGVD 99 (264)
T ss_dssp TCSHHHHHHHHHHHHHTTCSEEEEESCCCSTTCCCCCHHHHHHHHHHHHHHHTTSSS--EEEEECSCHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCcCCHHHHHHhhhhHhhhhcccCc--ccchhhhhHHHHHHHHhcCCc
Confidence 46889999999999999999998887554444332 566888888888876554 345566789999999999999
Q ss_pred eEe-cC-CCchHHHHhcc---C--------C---CC--CH----HHHHHHHHHHHHcCCc---eeecEEeecCCCHHHHH
Q 022946 197 AYN-HN-LDTSREFYSKI---I--------T---TR--SY----DERLETLKHVREAGIN---VCSGGIIGLGEAEEDRV 251 (289)
Q Consensus 197 ~v~-i~-let~~~~~~~i---~--------~---~~--~~----~~~~~~i~~~~~~Gi~---v~~~~i~Glget~ed~~ 251 (289)
.|+ ++ ...-++.++.+ . + .. .+ +...+.++.+.+.|+. +..+-=+|+|-|.++=.
T Consensus 100 iINDVs~g~~d~~~~~~va~~~~~~ilmH~~~~~~~~~~~~~v~~~~~~~~~~~~~~Gi~~~~IilDPGiGFgKt~~~n~ 179 (264)
T d1ad1a_ 100 IINDQWAGLYDHRMFQVVAKYDAEIVLMHNGNGNRDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWLDPGIGFAKTRNEEA 179 (264)
T ss_dssp EEEETTTTSSCTHHHHHHHHTTCEEEEECCCCTTCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHH
T ss_pred EeeccccccccccHHHHHhhcCcceeeeeeccccccCccchhhhhHHHHHHHHHHhhccccceEEeccCcCccccchhHH
Confidence 988 53 32213333221 1 1 11 13 3344455567888985 33333346688888766
Q ss_pred HHHHHHh
Q 022946 252 GLLHTLA 258 (289)
Q Consensus 252 ~~l~~l~ 258 (289)
+++..+.
T Consensus 180 ~ll~~l~ 186 (264)
T d1ad1a_ 180 EVMARLD 186 (264)
T ss_dssp HHHHCHH
T ss_pred HHHHHHH
Confidence 6665543
|
| >d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain species: Pseudomonas sp. [TaxId: 306]
Probab=94.54 E-value=0.18 Score=40.58 Aligned_cols=138 Identities=12% Similarity=0.026 Sum_probs=72.0
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCC---CchhHHHHHHHHHHHH----hcCceEEEeCCCCCHHHHHHHHHc
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG---RKTNFNQILEYVKDIR----DMGMEVCCTLGMLEKHQAIELKKA 193 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~g---e~~~~~~l~e~i~~ik----~~~~~i~~~~g~l~~e~l~~L~~a 193 (289)
.++.++.++.++.+.+.|++.|.++........ .........+.++.+. ...+......+.-..+.+....+.
T Consensus 25 ~~s~e~k~~i~~~L~~~Gv~~IEvG~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 104 (289)
T d1nvma2 25 QYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAGEISHAQIATLLLPGIGSVHDLKNAYQA 104 (289)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCSSCHHHHHHHHHTTCSSSEEEEEECBTTBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccchhhhccchHHHHHHHHHHhcchhHHHHHHhhhhhhHHHHHHHHHh
Confidence 379999999999999999999987532111100 0001111223333333 223334444566667777777788
Q ss_pred CCCeEecC--CCchH---HHHhcc---C----------CCCCHHHHHHHHHHHHHcCCc-eeecEEeecCCCHHHHHHHH
Q 022946 194 GLTAYNHN--LDTSR---EFYSKI---I----------TTRSYDERLETLKHVREAGIN-VCSGGIIGLGEAEEDRVGLL 254 (289)
Q Consensus 194 G~~~v~i~--let~~---~~~~~i---~----------~~~~~~~~~~~i~~~~~~Gi~-v~~~~i~Glget~ed~~~~l 254 (289)
|++.+.+. .+... +..+.. . ...+.+.+.+.++.+.+.|.. ++..=.+| .-+++++.+.+
T Consensus 105 ~~~~~r~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~I~l~DT~G-~~~P~~v~~~v 183 (289)
T d1nvma2 105 GARVVRVATHCTEADVSKQHIEYARNLGMDTVGFLMMSHMIPAEKLAEQGKLMESYGATCIYMADSGG-AMSMNDIRDRM 183 (289)
T ss_dssp TCCEEEEEEETTCGGGGHHHHHHHHHHTCEEEEEEESTTSSCHHHHHHHHHHHHHHTCSEEEEECTTC-CCCHHHHHHHH
T ss_pred cccceEEEeehhhhhhHhHHHHHHHHhCCceeeEeeeccccCchhhhHHHHhhccccceeeeecchhh-cccchhHHHHH
Confidence 88766542 22111 111100 0 123456666667777776654 22211223 23566666666
Q ss_pred HHHhc
Q 022946 255 HTLAT 259 (289)
Q Consensus 255 ~~l~~ 259 (289)
..+++
T Consensus 184 ~~l~~ 188 (289)
T d1nvma2 184 RAFKA 188 (289)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
|
| >d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Pyridoxine 5'-phosphate synthase family: Pyridoxine 5'-phosphate synthase domain: Pyridoxine 5'-phosphate synthase species: Escherichia coli [TaxId: 562]
Probab=94.33 E-value=0.078 Score=41.63 Aligned_cols=131 Identities=11% Similarity=0.176 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHcCCcEEEEe----------cccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcC
Q 022946 125 DAVMQAAQKAKEAGSTRFCMG----------AAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAG 194 (289)
Q Consensus 125 eei~~~~~~~~~~g~~~i~i~----------~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG 194 (289)
+++++.+... ..+.+|++ |||. . ....+.+.++++.+++.++++..... -+.+.++..++.|
T Consensus 76 ~e~i~ia~~~---kP~qvtLVPe~r~elTTegGld-~---~~~~~~L~~~i~~l~~~girvSLFiD-pd~~~i~~a~~lG 147 (242)
T d1m5wa_ 76 EEMLAIAVET---KPHFCCLVPEKRQEVTTEGGLD-V---AGQRDKMRDACKRLADAGIQVSLFID-ADEEQIKAAAEVG 147 (242)
T ss_dssp HHHHHHHHHH---CCSEEEECCCCSSCSSCCSCCC-S---GGGHHHHHHHHHHHHHTTCEEEEEEC-SCHHHHHHHHHTT
T ss_pred hhHHHHHHHh---ccceEEEeecCccccCcCCcee-e---hhhHHHHHHHHHHHHhcCCeEEEEec-cchhhHHHHhhcC
Confidence 5666665544 45677775 2221 1 23678899999999988988755443 4689999999999
Q ss_pred CCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccc
Q 022946 195 LTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINAL 272 (289)
Q Consensus 195 ~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~ 272 (289)
+|+|.+--..+.+.+..-.....++.+.++.+.+++.|+.|+ .|+|=+.+.+.. +.+++ ..+.|++..+
T Consensus 148 ad~IElhTG~Ya~a~~~~~~~~el~~i~~aa~~A~~lGL~Vn----AGHgLn~~Nl~~----i~~ip-~i~EvsIGHa 216 (242)
T d1m5wa_ 148 APFIEIHTGCYADAKTDAEQAQELARIAKAATFAASLGLKVN----AGHGLTYHNVKA----IAAIP-EMHELNIGHA 216 (242)
T ss_dssp CSEEEEECHHHHHCCSHHHHHHHHHHHHHHHHHHHHTTCEEE----EESSCCTTTHHH----HHTCT-TEEEEEECHH
T ss_pred cceeeeecccccccccchhhHHHHHHHHHHHHHHHhcCCccc----CCCCcCccchHH----HhcCC-CCeEEeccHH
Confidence 999987553332111110011235677788888999999885 567666665533 22343 3456665443
|
| >d1x7fa2 c.1.8.12 (A:1-244) Outer surface protein, N-terminal domain {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Outer surface protein, N-terminal domain domain: Outer surface protein, N-terminal domain species: Bacillus cereus [TaxId: 1396]
Probab=93.67 E-value=0.031 Score=44.16 Aligned_cols=149 Identities=13% Similarity=0.061 Sum_probs=86.9
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCC-CchhHHHHHHHHHHHHhcCceEEE--eCCCC-----CHHHHHHHHHc
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG-RKTNFNQILEYVKDIRDMGMEVCC--TLGML-----EKHQAIELKKA 193 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~g-e~~~~~~l~e~i~~ik~~~~~i~~--~~g~l-----~~e~l~~L~~a 193 (289)
.+.++..+.++.+..+|+++|+.+-. .+-+ .....+.+.++++..++.|+++.+ ++..+ +.+.+..|++.
T Consensus 14 ~~~e~~~~yi~~a~~~Gf~~iFTSL~--~~e~~~~~~~~~~~~l~~~a~~~g~~vi~DIsp~~l~~lg~s~~dl~~~~~l 91 (244)
T d1x7fa2 14 STKEKDMAYISAAARHGFSRIFTCLL--SVNRPKEEIVAEFKEIINHAKDNNMEVILDVAPAVFDQLGISYSDLSFFAEL 91 (244)
T ss_dssp SCHHHHHHHHHHHHTTTEEEEEEEEC--CC--------HHHHHHHHHHHHTTCEEEEEECTTCC------CCCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEecCc--cCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCHHHHHHhCCCHHHHHHHHHC
Confidence 36788889999999999998854321 1111 123557788888888888988654 44433 23457899999
Q ss_pred CCCeEec--CCCch-HHHHhcc------CCCCCHHHHHHHHHHHHHcCCc-----eeecEEe--ecCCCHHHHHHHHHHH
Q 022946 194 GLTAYNH--NLDTS-REFYSKI------ITTRSYDERLETLKHVREAGIN-----VCSGGII--GLGEAEEDRVGLLHTL 257 (289)
Q Consensus 194 G~~~v~i--~let~-~~~~~~i------~~~~~~~~~~~~i~~~~~~Gi~-----v~~~~i~--Glget~ed~~~~l~~l 257 (289)
|++.+.+ |+... ....... .-..|-. .+-+..+...+.. .+.++-. ..|=+.+.+.+.-+++
T Consensus 92 Gi~glRlD~Gf~~~e~a~ms~n~~~l~I~LNaSt~--t~~l~~l~~~~~n~~~l~acHNFYPr~~TGLs~~~f~~~n~~~ 169 (244)
T d1x7fa2 92 GADGIRLDVGFDGLTEAKMTNNPYGLKIELNVSND--IAYLENILSHQANKSALIGCHNFYPQKFTGLPYDYFIRCSERF 169 (244)
T ss_dssp TCSEEEESSCCSSHHHHHHTTCTTCCEEEEETTSC--SSHHHHHTTSSCCGGGEEEECCCBCSTTCSBCHHHHHHHHHHH
T ss_pred CCCEEEEcCCCChHHHHHHhcCCcCCEEEEECCcC--HHHHHHHHHcCCChhheEEeeccCCCCCCCCCHHHHHHHHHHH
Confidence 9998775 55444 2222111 1011211 1234444554442 2333333 1166788999999999
Q ss_pred hcCCCCCCeeeeccceecCCCC
Q 022946 258 ATLPTHPESVPINALLAVKGTP 279 (289)
Q Consensus 258 ~~l~~~~~~v~i~~~~p~pgTp 279 (289)
++.+ . .+..|+|-.+..
T Consensus 170 k~~g--i---~t~AFI~g~~~~ 186 (244)
T d1x7fa2 170 KKHG--I---RSAAFITSHVAN 186 (244)
T ss_dssp HHTT--C---CCEEEECCSSCC
T ss_pred HHcC--C---CEEEEEeCCccc
Confidence 9883 3 357888876543
|
| >d1ajza_ c.1.21.1 (A:) Dihydropteroate synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Escherichia coli [TaxId: 562]
Probab=93.31 E-value=1.5 Score=34.89 Aligned_cols=137 Identities=16% Similarity=0.143 Sum_probs=90.3
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC----chhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCC
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR----KTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGL 195 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge----~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~ 195 (289)
..+.+..++.++.+.+.|++-+=++|-..-|+.. ...++++...++.++ ..++. .+..+...+++++-.++|+
T Consensus 34 ~~~~~~a~~~a~~mi~~GAdiIDIGgeSTrPga~~vs~eeE~~Rl~pvi~~l~~~~~~~--iSIDT~~~eVa~~al~~Ga 111 (282)
T d1ajza_ 34 HNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRFEVW--ISVDTSKPEVIRESAKVGA 111 (282)
T ss_dssp SSHHHHHHHHHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHCCCE--EEEECCCHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCccccccccCCcHHHHHHHHHHHHHHHhhcccce--EEEEecChHHHHHHHhcCc
Confidence 3688999999999999999988887754444433 256788888888887 44443 3555677888888888888
Q ss_pred CeEe-cC-CCchHHHHhcc----------C-CC-----------CC-----HHHHHHHHHHHHHcCCc---eeecEEeec
Q 022946 196 TAYN-HN-LDTSREFYSKI----------I-TT-----------RS-----YDERLETLKHVREAGIN---VCSGGIIGL 243 (289)
Q Consensus 196 ~~v~-i~-let~~~~~~~i----------~-~~-----------~~-----~~~~~~~i~~~~~~Gi~---v~~~~i~Gl 243 (289)
+.|+ ++ +.. ++.++.+ + ++ .+ .+...+.++.+.+.|+. +..+-=+|+
T Consensus 112 ~iINDvsg~~~-~~~~~~va~~~~~~vlmh~~g~p~~~~~~~~y~dv~~~v~~~~~~~~~~~~~~GI~~~~IilDPGiGF 190 (282)
T d1ajza_ 112 HIINDIRSLSE-PGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQAGIAKEKLLLDPGFGF 190 (282)
T ss_dssp CEECCTTTTCS-TTHHHHHHHHTCCEEEECCSSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTS
T ss_pred eEEechhhccc-chhHHHhhccCceEEEeccCCCccccccCCcccchhhhhHHHHHHHHHHHHHcCCcHhhEecCCCcCc
Confidence 8776 32 221 2222110 0 00 01 24556677778889983 555555577
Q ss_pred CCCHHHHHHHHHHHhcC
Q 022946 244 GEAEEDRVGLLHTLATL 260 (289)
Q Consensus 244 get~ed~~~~l~~l~~l 260 (289)
|-|.++-.+.+..+..+
T Consensus 191 gK~~~~n~~ll~~l~~~ 207 (282)
T d1ajza_ 191 GKNLSHNYSLLARLAEF 207 (282)
T ss_dssp SCCHHHHHHHHHTGGGG
T ss_pred CCChhhhHHHHhhcchh
Confidence 88888877777766654
|
| >d1tx2a_ c.1.21.1 (A:) Dihydropteroate synthetase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Bacillus anthracis [TaxId: 1392]
Probab=93.09 E-value=1.1 Score=35.70 Aligned_cols=137 Identities=14% Similarity=0.232 Sum_probs=87.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCc----hhHHHHHHHHHHHHh-cCceEEEeCCCCCHHHHHHHHHcCCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK----TNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~----~~~~~l~e~i~~ik~-~~~~i~~~~g~l~~e~l~~L~~aG~~ 196 (289)
.+++..++.++.+.+.|++-|=++|-...|+..+ ...+++...++.+++ .++.+ +..+...+++++-.++|++
T Consensus 39 ~~~~~a~~~a~~~i~~GAdiIDIGaeSTrPg~~~is~~eE~~rl~p~i~~~~~~~~~~i--SIDT~~~~Va~~al~~G~~ 116 (273)
T d1tx2a_ 39 NEVDAAVRHAKEMRDEGAHIIDIGGESTRPGFAKVSVEEEIKRVVPMIQAVSKEVKLPI--SIDTYKAEVAKQAIEAGAH 116 (273)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEESCC----CCCCCHHHHHHHHHHHHHHHHHHSCSCE--EEECSCHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeeceeccccccccCHHHHHHhhchhHHhhhccceEEE--ehHHhhHHHHHHHHHcCCe
Confidence 4789999999999999999988877544443332 455677777776663 44433 5566789999988999999
Q ss_pred eEe-c-CCCc--h-HHHHhccCC--------C---C--C----HHHHHHHHHHHHHcCCc---eeecEEeecCCCHHHHH
Q 022946 197 AYN-H-NLDT--S-REFYSKIIT--------T---R--S----YDERLETLKHVREAGIN---VCSGGIIGLGEAEEDRV 251 (289)
Q Consensus 197 ~v~-i-~let--~-~~~~~~i~~--------~---~--~----~~~~~~~i~~~~~~Gi~---v~~~~i~Glget~ed~~ 251 (289)
.|+ + |... . .++..+... + . . .....+.++.+.++|+. +..+-=+|+|-+.++-.
T Consensus 117 iINDvsg~~~D~~m~~~~~~~~~~~vlmH~~~~~~~~~~~~~~~~~~~~~i~~~~~~GI~~~~IiiDPGiGFgK~~~~n~ 196 (273)
T d1tx2a_ 117 IINDIWGAKAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDSIKIAKDAGVRDENIILDPGIGFAKTPEQNL 196 (273)
T ss_dssp EEEETTTTSSCTHHHHHHHHHTCCEEEECCCSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHH
T ss_pred EEeccccccchhHHHHHHHhhcccccccccccccccccccchhhhhHHHHHHHHHHcCCChheEecCccCCccchHHHHH
Confidence 887 4 3432 2 232222211 1 0 1 24455677778889984 33333345688888888
Q ss_pred HHHHHHhcC
Q 022946 252 GLLHTLATL 260 (289)
Q Consensus 252 ~~l~~l~~l 260 (289)
+++..+..+
T Consensus 197 ~ll~~i~~l 205 (273)
T d1tx2a_ 197 EAMRNLEQL 205 (273)
T ss_dssp HHHHTGGGG
T ss_pred HHHhhhccc
Confidence 877777655
|
| >d1vp8a_ c.49.1.2 (A:) Hypothetical protein AF0103 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Pyruvate kinase C-terminal domain-like superfamily: PK C-terminal domain-like family: MTH1675-like domain: Hypothetical protein AF0103 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=92.28 E-value=0.45 Score=35.15 Aligned_cols=104 Identities=22% Similarity=0.287 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEe------CC--CCCHHHHHHHHHcC
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCT------LG--MLEKHQAIELKKAG 194 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~------~g--~l~~e~l~~L~~aG 194 (289)
+.+.+...++++.+.|++.|++-+. .|+ .-..++++ ++...+-+.++ .| .+++|..+.|++.|
T Consensus 17 T~~~l~~a~~rA~Elgi~~iVvASt----sG~--TA~~~~e~---~~g~~lvvVth~~GF~~pg~~e~~~e~~~~L~~~G 87 (190)
T d1vp8a_ 17 TEETLRLAVERAKELGIKHLVVASS----YGD--TAMKALEM---AEGLEVVVVTYHTGFVREGENTMPPEVEEELRKRG 87 (190)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEECS----SSH--HHHHHHHH---CTTCEEEEEECCTTSSSTTCCSSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEeC----CcH--HHHHHHHH---hcCCeEEEEecccCCCCCCcccCCHHHHHHHHHcC
Confidence 3344445557888899999988652 342 22233333 33222222222 22 47999999999999
Q ss_pred CCeEe--cCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCce
Q 022946 195 LTAYN--HNLDTS-REFYSKIITTRSYDERLETLKHVREAGINV 235 (289)
Q Consensus 195 ~~~v~--i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v 235 (289)
++.+. +-+-+. ..+.+++..-...+-+.++++.+-..|++|
T Consensus 88 ~~V~t~tH~lSg~eR~is~kfgG~~p~EiiA~tLR~lfgqG~KV 131 (190)
T d1vp8a_ 88 AKIVRQSHILSGLERSISRKLGGVSRTEAIAEALRSLFGHGLKV 131 (190)
T ss_dssp CEEEECCCTTTTTHHHHHHHTCCCCHHHHHHHHHHHHHCHHHHH
T ss_pred CEEEEecccccchhhhhhhhcCCcCHHHHHHHHHHHHhCCCcEE
Confidence 98876 445555 556666655455666666777544444443
|
| >d1eyea_ c.1.21.1 (A:) Dihydropteroate synthetase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.37 E-value=2.2 Score=33.64 Aligned_cols=148 Identities=14% Similarity=0.187 Sum_probs=88.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC----chhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCC
Q 022946 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR----KTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGL 195 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge----~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~ 195 (289)
...+.++.++.++.+.+.|++-+=++|-...|+.. ...+.++...++.+++.++.+ +..+...+++++..++|+
T Consensus 20 ~~~~~~~a~~~a~~~~~~GAdiIDIGgeSTrPga~~is~~eE~~Rl~p~i~~~~~~~~~i--SIDT~~~~Va~~al~~Ga 97 (270)
T d1eyea_ 20 CYLDLDDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETSRVIPVVKELAAQGITV--SIDTMRADVARAALQNGA 97 (270)
T ss_dssp CCCSHHHHHHHHHHHHHTTCSEEEEECC--------------HHHHHHHHHHHHHTTCCE--EEECSCHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHHHHHHCCCCEEEECCccCCCCCEeeechhhcccccceeeeecccceee--chHhhhHHHHHHHHhcCC
Confidence 34689999999999999999988887744434322 256678888888887666554 456678999999999999
Q ss_pred CeEe-c-CCCc--h-HHHHhccC--------CC--------C-C--------HHHHHHHHHHHHHcCCc---eeecEEee
Q 022946 196 TAYN-H-NLDT--S-REFYSKII--------TT--------R-S--------YDERLETLKHVREAGIN---VCSGGIIG 242 (289)
Q Consensus 196 ~~v~-i-~let--~-~~~~~~i~--------~~--------~-~--------~~~~~~~i~~~~~~Gi~---v~~~~i~G 242 (289)
+.|+ + |... . .++..+.. ++ . . .....+.++.+.+.|+. +..+-=+|
T Consensus 98 ~iINDvsg~~~d~~m~~~~a~~~~~~vlmh~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Gi~~~~IilDPGiG 177 (270)
T d1eyea_ 98 QMVNDVSGGRADPAMGPLLAEADVPWVLMHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAVAAGVDPARLVLDPGLG 177 (270)
T ss_dssp CEEEETTTTSSCTTHHHHHHHHTCCEEEECCCCSCTTCTTSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTT
T ss_pred eEEEeccccccchhHHhhhhhcccceeeeeccccccccccccccccchhhhhhhHHHHHHHHHHhccccceEEEEccccc
Confidence 9888 5 3432 1 22222111 00 0 1 13445566667778885 33333346
Q ss_pred cCCCHHHHHHHHHHH---hcCCCCCCeeeec
Q 022946 243 LGEAEEDRVGLLHTL---ATLPTHPESVPIN 270 (289)
Q Consensus 243 lget~ed~~~~l~~l---~~l~~~~~~v~i~ 270 (289)
+|-|.++=.+.+..+ ..++ .|-.++++
T Consensus 178 FgKt~~~n~~lL~~l~~~~~~g-~PiLvG~S 207 (270)
T d1eyea_ 178 FAKTAQHNWAILHALPELVATG-IPVLVGAS 207 (270)
T ss_dssp SSCCHHHHHHHHHTHHHHHTTS-SCBEECCT
T ss_pred cCcccchHHHHHHHHHhhccCC-CceEEeeh
Confidence 688877655555444 4443 34444443
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=90.15 E-value=2.1 Score=34.81 Aligned_cols=90 Identities=16% Similarity=0.045 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCC-----------HHHHHHHH
Q 022946 124 KDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLE-----------KHQAIELK 191 (289)
Q Consensus 124 ~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~-----------~e~l~~L~ 191 (289)
.-..++.++...+.|++++++..-+....+. .....++++++.+. +..+++..-.|.-+ .|.+++|.
T Consensus 47 iGdP~~~a~~~~~~gaDeL~ivDidas~~~~-~~~~~~~~~I~~i~~~~~vPi~vGGGIrsi~di~~~~~~~~e~A~~ll 125 (323)
T d1jvna1 47 LGKPVQLAQKYYQQGADEVTFLNITSFRDCP-LKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYF 125 (323)
T ss_dssp CHHHHHHHHHHHHTTCSEEEEEEEC---CCC-GGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCCCEEEEEECcCCCCCc-CCCchHHHHHHhhccccceeEEEecCcccHHHhhhccchhhHHHHHHH
Confidence 3466778888889999999986532211121 22245677887775 56788877777544 57789999
Q ss_pred HcCCCeEecCCCch--HHHHhccCC
Q 022946 192 KAGLTAYNHNLDTS--REFYSKIIT 214 (289)
Q Consensus 192 ~aG~~~v~i~let~--~~~~~~i~~ 214 (289)
++|+++|.++=.+. ++.+..+..
T Consensus 126 ~~GadKVvI~T~ai~~p~~~~e~~~ 150 (323)
T d1jvna1 126 RSGADKVSIGTDAVYAAEKYYELGN 150 (323)
T ss_dssp HHTCSEEEECHHHHHHHHHHHHTTS
T ss_pred HcCCCeEEechHHhhChHHHHHHHh
Confidence 99999999986665 666665544
|
| >d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=90.09 E-value=0.56 Score=36.39 Aligned_cols=99 Identities=14% Similarity=0.120 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE-ecccCCCCCCchhHHHHHHHHHHHHh-cCceEEEeCCC-CCHHHHHHHHHcCCCeEe
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGM-LEKHQAIELKKAGLTAYN 199 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i-~~~~~~~~ge~~~~~~l~e~i~~ik~-~~~~i~~~~g~-l~~e~l~~L~~aG~~~v~ 199 (289)
+...+.++++.+.+.|++.+++ ..++. +...-..-..+ ++.+++ ..+.+.++.-. -+.+.++.+.++|++.+.
T Consensus 21 d~~~l~~~i~~l~~~g~d~iHiDImDG~-Fvpn~t~~~~~---v~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~~~i~ 96 (230)
T d1rpxa_ 21 NFSKLGEQVKAIEQAGCDWIHVDVMDGR-FVPNITIGPLV---VDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVS 96 (230)
T ss_dssp CGGGHHHHHHHHHHTTCCCEEEEEEBSS-SSSCBCCCHHH---HHHHGGGCCSCEEEEEESSSHHHHHHHHHHTTCSEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCccCC-cCCccccChHH---HhhhhhccCceeeeeeeecchhhhHHHHhhcccceeE
Confidence 4456677788888889998877 22222 22111222333 444442 23333333222 235678999999999999
Q ss_pred cCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCcee
Q 022946 200 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVC 236 (289)
Q Consensus 200 i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~ 236 (289)
+..|+. +..+..+.++.+++.|.+++
T Consensus 97 ~H~E~~-----------~~~~~~~~i~~ik~~g~k~G 122 (230)
T d1rpxa_ 97 VHCEQS-----------STIHLHRTINQIKSLGAKAG 122 (230)
T ss_dssp EECSTT-----------TCSCHHHHHHHHHHTTSEEE
T ss_pred Eecccc-----------ccccHHHHHHHHHHcCCeEE
Confidence 999863 11234566777888887653
|
| >d1j6oa_ c.1.9.12 (A:) Hypothetical protein TM0667 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Hypothetical protein TM0667 species: Thermotoga maritima [TaxId: 2336]
Probab=89.97 E-value=0.08 Score=42.30 Aligned_cols=49 Identities=6% Similarity=-0.050 Sum_probs=41.7
Q ss_pred CCcccc-ccccccccccchHHHHHHHHHhcCCCCCCCHHHHHHhhCCChHHHH
Q 022946 19 SKKFLA-LHSSCSCYSASAAAIEAERTIREGPRHDWSKDDIKSIYDSPVLDLL 70 (289)
Q Consensus 19 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ee~~~l~~~~~~~l~ 70 (289)
-+||++ .|.++++|.|+++..+++.+++ -.+++.+|+...+..+...++
T Consensus 206 D~P~l~p~~~~~~~n~P~~l~~v~~~iA~---~~~~~~~ev~~~~~~N~~rlF 255 (260)
T d1j6oa_ 206 DCPFLPPQPFRGKRNEPKYLKYVVETISQ---VLGVPEAKVDEATTENARRIF 255 (260)
T ss_dssp CBTSCCCGGGTTSCCCGGGHHHHHHHHHH---HHTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHH---HhCcCHHHHHHHHHHHHHHHH
Confidence 489999 7899999999999999999999 889999998877665555544
|
| >d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Zinc finger protein 64, ZFP68 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.66 E-value=0.043 Score=27.00 Aligned_cols=11 Identities=27% Similarity=0.863 Sum_probs=9.2
Q ss_pred CcCCCCCCCCC
Q 022946 100 SEDCSYCPQSS 110 (289)
Q Consensus 100 ~~~C~fC~~~~ 110 (289)
|++|.||++..
T Consensus 2 PFkC~~CsFDt 12 (29)
T d1x5wa2 2 PFKCNYCSFDT 12 (29)
T ss_dssp SEECSSSSCEE
T ss_pred Ccccceecccc
Confidence 68999999863
|
| >d1yixa1 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Putative deoxyribonuclease YcfH species: Escherichia coli [TaxId: 562]
Probab=88.44 E-value=0.088 Score=42.13 Aligned_cols=47 Identities=9% Similarity=0.029 Sum_probs=39.8
Q ss_pred CCcccc-ccccccccccchHHHHHHHHHhcCCCCCCCHHHHHHhhCCChHH
Q 022946 19 SKKFLA-LHSSCSCYSASAAAIEAERTIREGPRHDWSKDDIKSIYDSPVLD 68 (289)
Q Consensus 19 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ee~~~l~~~~~~~ 68 (289)
-+||++ .|.++++|.|.++..+++.+++ -.+++.+|+...+..+...
T Consensus 205 D~P~~~p~~~~~~~n~P~~i~~~~~~iA~---i~~~~~~ev~~~~~~Na~~ 252 (265)
T d1yixa1 205 DSPYLAPVPHRGKENQPAMVRDVAEYMAV---LKGVAVEELAQVTTDNFAR 252 (265)
T ss_dssp CBTSCCCTTCTTSCCCGGGHHHHHHHHHH---HHTSCHHHHHHHHHHHHHH
T ss_pred CCcccCccccCCCCCCcHHHHHHHHHHHH---HHCcCHHHHHHHHHHHHHH
Confidence 499999 7999999999999999999999 7889999988766544433
|
| >d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=88.00 E-value=0.85 Score=35.06 Aligned_cols=99 Identities=18% Similarity=0.139 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE-ecccCCCCCCchhHHHHHHHHHHHHhc-CceEEEeCCC-CCHHHHHHHHHcCCCeEe
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNFNQILEYVKDIRDM-GMEVCCTLGM-LEKHQAIELKKAGLTAYN 199 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i-~~~~~~~~ge~~~~~~l~e~i~~ik~~-~~~i~~~~g~-l~~e~l~~L~~aG~~~v~ 199 (289)
+.-.+.++++.+.+.|++.+++ ..++. +...-..-..+ ++.++.. .+.+.++.-. -+.+.++.+.++|.+.+.
T Consensus 13 d~~~l~~~i~~l~~~g~d~iHiDImDG~-Fvpn~t~~~~~---~~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~~~i~ 88 (221)
T d1tqja_ 13 DFSRLGEEIKAVDEAGADWIHVDVMDGR-FVPNITIGPLI---VDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIIS 88 (221)
T ss_dssp CGGGHHHHHHHHHHTTCSEEEEEEEBSS-SSSCBCBCHHH---HHHHGGGCCSEEEEEEESSSGGGTHHHHHHHTCSEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECccCC-ccCccccCcHh---HHhhhhccCcceeeeEEEeCHHHHHHHHhhccceEEE
Confidence 3455677778888889999887 22222 12111222334 4444432 3333333222 234568999999999999
Q ss_pred cCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCcee
Q 022946 200 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVC 236 (289)
Q Consensus 200 i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~ 236 (289)
+.+|+. +..+..+.+..+++.|++++
T Consensus 89 ~H~E~~-----------~~~~~~~~~~~i~~~g~~~G 114 (221)
T d1tqja_ 89 VHVEHN-----------ASPHLHRTLCQIRELGKKAG 114 (221)
T ss_dssp EECSTT-----------TCTTHHHHHHHHHHTTCEEE
T ss_pred Eeeccc-----------cChhhHHHHHHHHHCCCCEE
Confidence 988763 11224556666667776544
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=87.98 E-value=1.4 Score=34.41 Aligned_cols=74 Identities=15% Similarity=0.144 Sum_probs=54.6
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch
Q 022946 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 205 (289)
Q Consensus 128 ~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~ 205 (289)
++.++.+.+.|++++++..-+... .......++++.+. ...+++..-.|.-+.+.++.+.++|+++|.++-.+.
T Consensus 33 ~~~a~~~~~~g~dei~ivDld~~~----~~~~~~~~~i~~i~~~~~~pi~vgGGIr~~e~i~~~l~~Ga~kviigs~~~ 107 (253)
T d1thfd_ 33 VELGKFYSEIGIDELVFLDITASV----EKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAV 107 (253)
T ss_dssp HHHHHHHHHTTCCEEEEEESSCSS----SHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred HHHHHHHHHcCCCEEEEEeecccc----cCcccHHHHHHHHHhccCccceeecccccchhhhhHHhcCCCEEEEChHHh
Confidence 455666778899999987633221 23345566776665 457888888899999999999999999999876443
|
| >d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=87.65 E-value=1.2 Score=34.21 Aligned_cols=98 Identities=16% Similarity=0.221 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEe-cccCCCCCCchhHHHHHHHHHHHHh-cCceEEEeCCC-CCHHHHHHHHHcCCCeEe
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMG-AAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGM-LEKHQAIELKKAGLTAYN 199 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~-~~~~~~~ge~~~~~~l~e~i~~ik~-~~~~i~~~~g~-l~~e~l~~L~~aG~~~v~ 199 (289)
+.-.+.++++.+.+.|++.+++- .++. +...-..-. +.++.+++ ....+.++.-. -+.+.++.+.++|.+.+.
T Consensus 12 d~~~l~~ei~~l~~~~~d~iHiDimDg~-Fvpn~t~~~---~~i~~i~~~~~~~~dvHLMv~~p~~~i~~~~~~g~~~I~ 87 (220)
T d1h1ya_ 12 DFANLAAEADRMVRLGADWLHMDIMDGH-FVPNLTIGA---PVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAKAGASGFT 87 (220)
T ss_dssp CGGGHHHHHHHHHHTTCSEEEEEEEBSS-SSSCBCBCH---HHHHHHHTTCCSEEEEEEESSCGGGGHHHHHHHTCSEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeecCc-cccccccCc---hhhhhhhhhcchhhhhHHHhcchhhhhHHhhhcccceee
Confidence 33556777778888899988872 2222 221112223 33444442 23333333222 335678999999999999
Q ss_pred cCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCcee
Q 022946 200 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVC 236 (289)
Q Consensus 200 i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~ 236 (289)
+..|+.. +...+.++.+++.|++++
T Consensus 88 ~H~E~~~------------~~~~~~i~~i~~~g~~~G 112 (220)
T d1h1ya_ 88 FHIEVSR------------DNWQELIQSIKAKGMRPG 112 (220)
T ss_dssp EEGGGCT------------TTHHHHHHHHHHTTCEEE
T ss_pred ecccccc------------hhHHHHHHHHHHcCCCcc
Confidence 9998631 123456677788887654
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=87.21 E-value=1.1 Score=34.10 Aligned_cols=68 Identities=13% Similarity=0.135 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCC-CCCHHHHHHHHHcCCCeEe
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG-MLEKHQAIELKKAGLTAYN 199 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g-~l~~e~l~~L~~aG~~~v~ 199 (289)
.+.+++.+.++.+.+.|++.+.++-. . | ...+.++.+++...++..-.| .++.+.++...++|.+.+.
T Consensus 23 ~~~~~~~~~~~al~~~Gi~~iEitl~--~----~----~a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~Fiv 91 (212)
T d1vhca_ 23 DNADDILPLADTLAKNGLSVAEITFR--S----E----AAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVV 91 (212)
T ss_dssp SSGGGHHHHHHHHHHTTCCEEEEETT--S----T----THHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHHHTCSEEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCC--C----h----hHHHHHHHHHhcCCCceEeeeecccHHHHHHHHhhCCcEEE
Confidence 36688888899999999999888641 1 2 234566666533323444444 4899999999999997654
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=86.46 E-value=0.84 Score=34.88 Aligned_cols=68 Identities=16% Similarity=0.158 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCC-CCCHHHHHHHHHcCCCeEe
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG-MLEKHQAIELKKAGLTAYN 199 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g-~l~~e~l~~L~~aG~~~v~ 199 (289)
.+.++++..++.+.+.|++.+.++- +. | ..++.++.+++...++..-.| .++.+.++...++|.+.+.
T Consensus 24 ~~~~~a~~~~~al~~~Gi~~iEitl--~t----p----~a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~Fiv 92 (213)
T d1wbha1 24 KKLEHAVPMAKALVAGGVRVLNVTL--RT----E----CAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAI 92 (213)
T ss_dssp SSGGGHHHHHHHHHHTTCCEEEEES--CS----T----THHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeC--CC----h----hHHHHHHHHHHHCCCCeeeccccccHHHHHHHHHCCCcEEE
Confidence 4789999999999999999988864 11 2 235555555533223434444 4899999999999997654
|
| >d1b5ta_ c.1.23.1 (A:) Methylenetetrahydrofolate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FAD-linked oxidoreductase family: Methylenetetrahydrofolate reductase domain: Methylenetetrahydrofolate reductase species: Escherichia coli [TaxId: 562]
Probab=86.46 E-value=6.2 Score=30.94 Aligned_cols=77 Identities=14% Similarity=0.111 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCC-c-hhHHHHHHHHHHHHhcCceEEEeC----CCCC-HHHHHHHH---H
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR-K-TNFNQILEYVKDIRDMGMEVCCTL----GMLE-KHQAIELK---K 192 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge-~-~~~~~l~e~i~~ik~~~~~i~~~~----g~l~-~e~l~~L~---~ 192 (289)
+.+++...+..+...|++.+...+|+....+. + .+-.+++++++......+.+...+ ..-+ +..++.|+ +
T Consensus 75 n~~~l~~~l~~~~~~GI~niL~l~GD~~~~~~~~~~~a~dlv~li~~~~~~~igva~~Peghp~~~~~~~~~~~lk~K~~ 154 (275)
T d1b5ta_ 75 TPDELRTIARDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKEVADFDISVAAYPEVHPEAKSAQADLLNLKRKVD 154 (275)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEECCCCCCSSSCCCCCCHHHHHHHHHHHCCCEEEEEECTTCCTTCSCHHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHhhCeEEEecCCCCCCCCCCcccHHHHHHHHHHHHhcCCceeecCCCCccchhHHHHHHHHHHHHH
Confidence 56888888889999999999877666443322 3 223444555544432323333221 1122 23344444 3
Q ss_pred cCCCeEe
Q 022946 193 AGLTAYN 199 (289)
Q Consensus 193 aG~~~v~ 199 (289)
+|.+.+.
T Consensus 155 aGA~fii 161 (275)
T d1b5ta_ 155 AGANRAI 161 (275)
T ss_dssp HTCCEEE
T ss_pred hhcCeee
Confidence 6887653
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=86.30 E-value=1.6 Score=34.13 Aligned_cols=74 Identities=16% Similarity=0.174 Sum_probs=52.8
Q ss_pred HHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCc
Q 022946 127 VMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (289)
Q Consensus 127 i~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let 204 (289)
.++.++.+.+.|++++++..-+... .......++++.+. ...+++....|.-+.+.++.+.++|+++|.++-..
T Consensus 34 P~~~a~~~~~~gadei~ivDl~~~~----~~~~~~~~~i~~i~~~~~~pi~~gGGIr~~e~~~~ll~~G~~kVii~s~~ 108 (252)
T d1h5ya_ 34 PVEMAVRYEEEGADEIAILDITAAP----EGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVNTAA 108 (252)
T ss_dssp HHHHHHHHHHTTCSCEEEEECCCCT----TTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHH
T ss_pred HHHHHHHHHHCCCCEEEEEeccccc----cccccHHHHHHHHHhhcCCcceeecccchhhhhhhHhhcCCcEEEecccc
Confidence 3455667778999999887633222 12234445555554 55788888889999999999999999999887443
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=86.28 E-value=1 Score=34.42 Aligned_cols=68 Identities=16% Similarity=0.284 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCC-CCCHHHHHHHHHcCCCeEe
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG-MLEKHQAIELKKAGLTAYN 199 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g-~l~~e~l~~L~~aG~~~v~ 199 (289)
.+.+++++.++.+.+.|++.+.+.- + .| .-++.++.+++...++..-.| .++.+.++...++|.+.+.
T Consensus 26 ~~~~~a~~~~~al~~~Gi~~iEitl--~----~p----~a~~~i~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~Fiv 94 (216)
T d1mxsa_ 26 AREEDILPLADALAAGGIRTLEVTL--R----SQ----HGLKAIQVLREQRPELCVGAGTVLDRSMFAAVEAAGAQFVV 94 (216)
T ss_dssp SCGGGHHHHHHHHHHTTCCEEEEES--S----ST----HHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSSEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeC--C----Ch----hHHHHHHHHHHhCCCcceeeeeeecHHHHHHHHhCCCCEEE
Confidence 4678899999999999999987754 1 12 344666666643334444444 4899999999999997554
|
| >d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=85.77 E-value=3.6 Score=31.62 Aligned_cols=76 Identities=13% Similarity=0.121 Sum_probs=52.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEec
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 200 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i 200 (289)
++.+++....+...+.|.+.|--..|....++ .......+.+..+..++.+-.+.|.-+.+.+.+|.++|.+++.-
T Consensus 145 L~~~~i~~a~~~a~~aGadFVKTSTG~~~~ga---t~~~~~~l~~~~~~~~vgIKasGGIrt~~~a~~~i~aGa~rIGt 220 (234)
T d1n7ka_ 145 WDDKTLSLLVDSSRRAGADIVKTSTGVYTKGG---DPVTVFRLASLAKPLGMGVKASGGIRSGIDAVLAVGAGADIIGT 220 (234)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEESCCSSSCCCC---SHHHHHHHHHHHGGGTCEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred cchHHHHHHHHHHHHhhhhheeecccccCCCC---CHHHHHHHHHHhcCCCCcEEeeCCcCCHHHHHHHHHccCceeec
Confidence 67899998888888999987754333222222 22344445554555556666788888999999999999998754
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=85.38 E-value=1.2 Score=34.73 Aligned_cols=73 Identities=16% Similarity=0.130 Sum_probs=53.4
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCc
Q 022946 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (289)
Q Consensus 128 ~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let 204 (289)
++.++.+.+.|++++++..-+.... ......++++.+. ...+++....|.-+.+.++.+.++|+++|.++-.+
T Consensus 33 ~~~a~~~~~~g~dei~iiDl~~~~~----~~~~~~~~i~~i~~~~~~pi~vgGGIrs~e~~~~ll~~Ga~kVii~s~~ 106 (251)
T d1ka9f_ 33 VEAARAYDEAGADELVFLDISATHE----ERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAA 106 (251)
T ss_dssp HHHHHHHHHHTCSCEEEEECCSSTT----CHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEECHHH
T ss_pred HHHHHHHHHcCCCEEEEEecccccc----cchhHHHHHHHHHhccCcchheeccccCHHHHHHHHHcCCCEEEECchh
Confidence 4455566788999999876432222 2234556666665 45788888899999999999999999999887544
|
| >d1zzma1 c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Putative deoxyribonuclease YjjV species: Escherichia coli [TaxId: 562]
Probab=85.17 E-value=0.27 Score=38.98 Aligned_cols=46 Identities=9% Similarity=-0.151 Sum_probs=39.4
Q ss_pred Ccccc-ccccccccccchHHHHHHHHHhcCCCCCCCHHHHHHhhCCChHH
Q 022946 20 KKFLA-LHSSCSCYSASAAAIEAERTIREGPRHDWSKDDIKSIYDSPVLD 68 (289)
Q Consensus 20 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ee~~~l~~~~~~~ 68 (289)
+||++ .+.++..|.|+++..+++.+++ -.+++.+|+..++..+...
T Consensus 208 ~P~~~~~~~~~~~~~P~~~~~~~~~iA~---i~~~~~~ev~~~~~~N~~r 254 (259)
T d1zzma1 208 APDMPLNGFQGQPNRPEQAARVFAVLCE---LRREPADEIAQALLNNTYT 254 (259)
T ss_dssp BTSSCCTTCTTSCCCGGGHHHHHHHHHH---HCSSCHHHHHHHHHHHHHH
T ss_pred CCCcCCCcCCCCCCchHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHH
Confidence 89998 7899999999999999999999 8899999988776544443
|
| >d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Streptococcus pyogenes [TaxId: 1314]
Probab=84.77 E-value=1.3 Score=33.87 Aligned_cols=97 Identities=11% Similarity=0.121 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE-ecccCCCCCCchhHHHHHHHHHHHHh-cCceEEEeCCCC-CHHHHHHHHHcCCCeEe
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGML-EKHQAIELKKAGLTAYN 199 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i-~~~~~~~~ge~~~~~~l~e~i~~ik~-~~~~i~~~~g~l-~~e~l~~L~~aG~~~v~ 199 (289)
+...+.++++.+.+.|++.+++ ...+.+..+ -..-.. .++.+++ ..+.+.++.-.. +.+.++.+.++|.+.|.
T Consensus 12 d~~~l~~~i~~~~~~g~d~iHiDimDg~Fvpn-~s~g~~---~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~ga~~i~ 87 (217)
T d2flia1 12 DYANFASELARIEETDAEYVHIDIMDGQFVPN-ISFGAD---VVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMT 87 (217)
T ss_dssp CGGGHHHHHHHHHHTTCCEEEEEEEBSSSSSC-BCBCHH---HHHHHHTTCCSEEEEEEESSSGGGGHHHHHHHTCSEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcccCcCCCc-cccCHH---HHHHHHhcCCCceEeEEEecCHHHHHHHHHHcCCcEEE
Confidence 3345666777788889999887 333322111 111123 3344442 233333332222 34578999999999999
Q ss_pred cCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCcee
Q 022946 200 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVC 236 (289)
Q Consensus 200 i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~ 236 (289)
+..|+.+ +..+.++.+++.|++++
T Consensus 88 ~H~E~~~-------------~~~~~i~~i~~~g~~~G 111 (217)
T d2flia1 88 IHTESTR-------------HIHGALQKIKAAGMKAG 111 (217)
T ss_dssp EEGGGCS-------------CHHHHHHHHHHTTSEEE
T ss_pred ecccccc-------------CHHHHHHHHHhcCCeEE
Confidence 9988741 13556777888887653
|
| >d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: CutC-like family: CutC-like domain: Copper homeostasis protein CutC species: Shigella flexneri [TaxId: 623]
Probab=84.66 E-value=3.1 Score=32.25 Aligned_cols=115 Identities=11% Similarity=0.080 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEe--CC--CCCHHHHHHHHHcCCCeE
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCT--LG--MLEKHQAIELKKAGLTAY 198 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~--~g--~l~~e~l~~L~~aG~~~v 198 (289)
..+.+.+.++.+++.|++.|+|+.-. .-| ....+.+.++++..+. +++..+ .. .-..+.++.|.+.|+++|
T Consensus 70 E~~~M~~di~~~k~~G~dGvV~G~L~--~dg-~iD~~~~~~L~~~a~~--l~vTFHRAfD~~~d~~~al~~Li~lG~~rI 144 (247)
T d1twda_ 70 EFAAILEDVRTVRELGFPGLVTGVLD--VDG-NVDMPRMEKIMAAAGP--LAVTFHRAFDMCANPLYTLNNLAELGIARV 144 (247)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEECCBC--TTS-SBCHHHHHHHHHHHTT--SEEEECGGGGGCSCHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEEC--CCC-CccHHHHHHHHHHhcc--cCeeeehhhhhhCCHHHHHHHHHhcCCCeE
Confidence 44667778888889999999986522 122 3566777777776654 343332 11 124556899999999998
Q ss_pred ecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHH
Q 022946 199 NHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLH 255 (289)
Q Consensus 199 ~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~ 255 (289)
.-+=.. .+..+-++.++.+.+..-.. .+|.|=|-+.+.+...++
T Consensus 145 LTSGg~-----------~~a~~G~~~L~~L~~~a~~~--iIm~GgGI~~~Ni~~l~~ 188 (247)
T d1twda_ 145 LTSGQK-----------SDALQGLSKIMELIAHRDAP--IIMAGAGVRAENLHHFLD 188 (247)
T ss_dssp EECTTS-----------SSTTTTHHHHHHHHTSSSCC--EEEEESSCCTTTHHHHHH
T ss_pred eccCCC-----------CchhHHHHHHHHHHHhcCCc--EEEecCCCCHHHHHHHHH
Confidence 743211 11222244444444432111 167777767666666554
|
| >d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain species: Pseudomonas sp. [TaxId: 306]
Probab=84.05 E-value=1.2 Score=35.28 Aligned_cols=114 Identities=11% Similarity=0.167 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-c--C--ceEEEe--CCCCCHHHHHHHHHcC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-M--G--MEVCCT--LGMLEKHQAIELKKAG 194 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~--~--~~i~~~--~g~l~~e~l~~L~~aG 194 (289)
.+.+.+.+.++.+.+.|++.|.+.. +.|. ..-..+.++++.+++ . . +.++.+ .|.-....+..+ ++|
T Consensus 145 ~~~~~~~~~~~~~~~~g~~~I~l~D----T~G~-~~P~~v~~~v~~l~~~~~~~~~i~~H~Hn~~g~a~an~l~A~-~~G 218 (289)
T d1nvma2 145 IPAEKLAEQGKLMESYGATCIYMAD----SGGA-MSMNDIRDRMRAFKAVLKPETQVGMHAHHNLSLGVANSIVAV-EEG 218 (289)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEEEC----TTCC-CCHHHHHHHHHHHHHHSCTTSEEEEECBCTTSCHHHHHHHHH-HTT
T ss_pred cCchhhhHHHHhhccccceeeeecc----hhhc-ccchhHHHHHHHHHHHhcccccceeeechHHHHHHHHHHHHH-HhC
Confidence 4778888888999999999998864 2222 122345555555542 1 2 233443 454444444444 789
Q ss_pred CCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHH
Q 022946 195 LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTL 257 (289)
Q Consensus 195 ~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l 257 (289)
++.|..++-+. ... +.-..+.++ ..+++.|+.. +-+.+.+.+..+.+
T Consensus 219 ~~~id~si~GlG~~~-----GN~~tE~lv---~~l~~~g~~~--------~id~~~l~~~~~~~ 266 (289)
T d1nvma2 219 CDRVDASLAGMGAGA-----GNAPLEVFI---AVAERLGWNH--------GTDLYTLMDAADDI 266 (289)
T ss_dssp CCEEEEBGGGCSSTT-----CBCBHHHHH---HHHHHHTCBC--------CSCHHHHHHHHHHT
T ss_pred CcEeeccccccCCCC-----CCccHHHHH---HHHHhcCCCC--------CCCHHHHHHHHHHH
Confidence 99998888665 211 122455554 4445667653 33455666655444
|
| >d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Probab=83.84 E-value=1.4 Score=32.14 Aligned_cols=68 Identities=18% Similarity=0.252 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcC---ceEEEeCCCCCHHHHHHHHHcCCCeE
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG---MEVCCTLGMLEKHQAIELKKAGLTAY 198 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~---~~i~~~~g~l~~e~l~~L~~aG~~~v 198 (289)
.++|++++.+. +.+.+-|.+++.. + .+.+.+.++++.+++.+ +.+. -.|.+.++..+.|+++|++.+
T Consensus 75 ~~~e~iv~aa~---~~~advI~iSs~~----~--~~~~~~~~l~~~L~~~g~~~v~Vi-vGG~ip~~d~~~l~~~Gv~~i 144 (168)
T d7reqa2 75 QTPEETARQAV---EADVHVVGVSSLA----G--GHLTLVPALRKELDKLGRPDILIT-VGGVIPEQDFDELRKDGAVEI 144 (168)
T ss_dssp BCHHHHHHHHH---HHTCSEEEEEECS----S--CHHHHHHHHHHHHHHTTCTTSEEE-EEESCCGGGHHHHHHHTEEEE
T ss_pred CcHHHHHHHHH---ccCCCEEEEecCc----c--cchHHHHHHHHHHHhcCCCCeEEE-EeCCCCHHHHHHHHhCCCCEE
Confidence 58888887665 5678888887521 1 25566666666676554 3332 345677888899999999886
Q ss_pred e
Q 022946 199 N 199 (289)
Q Consensus 199 ~ 199 (289)
.
T Consensus 145 F 145 (168)
T d7reqa2 145 Y 145 (168)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >d1ud2a2 c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillus sp., ksm-k38 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp., ksm-k38 [TaxId: 1409]
Probab=83.82 E-value=0.7 Score=37.62 Aligned_cols=84 Identities=13% Similarity=0.203 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHhcCce-EEEeCCCCCHHHHHHHHHcCCCeEec-CCCchHHHHhccCCC-CCHHHHHHHHHHHHHcCC
Q 022946 157 NFNQILEYVKDIRDMGME-VCCTLGMLEKHQAIELKKAGLTAYNH-NLDTSREFYSKIITT-RSYDERLETLKHVREAGI 233 (289)
Q Consensus 157 ~~~~l~e~i~~ik~~~~~-i~~~~g~l~~e~l~~L~~aG~~~v~i-~let~~~~~~~i~~~-~~~~~~~~~i~~~~~~Gi 233 (289)
.+..+.+-+..++++|+. |..++-.-.. .....|-+.... .+... .-...+.+. .+.++..+.++.|++.||
T Consensus 21 ~~~~i~~kLdyLk~LGvt~I~l~Pi~~~~----~~~~~gY~~~d~~~~~~~-~~~~~vd~~~Gt~~efk~lV~~~H~~GI 95 (390)
T d1ud2a2 21 HWNRLHDDAAALSDAGITAIWIPPAYKGN----SQADVGYGAYDLYDLGEF-NQKGTVRTKYGTKAQLERAIGSLKSNDI 95 (390)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEECCCSEES----STTCCSSSEEETTCSSCS-CBTTBSSCSSCCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCccCC----CCCCCCCCccCCcccccc-cccCCcCCCCCCHHHHHHHHHHHHhcCC
Confidence 567777777777777765 3332211000 001123322221 11111 001233332 478999999999999999
Q ss_pred ceeecEEeec-CC
Q 022946 234 NVCSGGIIGL-GE 245 (289)
Q Consensus 234 ~v~~~~i~Gl-ge 245 (289)
+|..++++++ ++
T Consensus 96 ~VilDvV~NHt~~ 108 (390)
T d1ud2a2 96 NVYGDVVMNHKMG 108 (390)
T ss_dssp EEEEEECCSEECC
T ss_pred ceEEEEccccccC
Confidence 9999999988 54
|
| >d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (2r)-phospho-3-sulfolactate synthase ComA family: (2r)-phospho-3-sulfolactate synthase ComA domain: (2r)-phospho-3-sulfolactate synthase ComA species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=83.79 E-value=7.9 Score=29.90 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=10.5
Q ss_pred CHHHHHHHHHHHHHcCC
Q 022946 217 SYDERLETLKHVREAGI 233 (289)
Q Consensus 217 ~~~~~~~~i~~~~~~Gi 233 (289)
+.+++++.++..-++|-
T Consensus 146 ~~~~~i~~~~~~LeaGA 162 (251)
T d1qwga_ 146 TIDDRIKLINFDLDAGA 162 (251)
T ss_dssp CHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHCCC
Confidence 45666666666666664
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=83.72 E-value=5.9 Score=30.62 Aligned_cols=126 Identities=11% Similarity=0.100 Sum_probs=69.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCC---CCHHHHHHHHHcCCCeE
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM---LEKHQAIELKKAGLTAY 198 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~---l~~e~l~~L~~aG~~~v 198 (289)
.+.+.+++.++.+++..-.-+.+.+ +-++...-.+.+.++..++.|+.-..-... -..+....+++.|++.|
T Consensus 63 ~~~~~~~~~~~~~r~~~~~pivlm~-----Y~N~i~~~G~~~f~~~~~~~Gv~GliipDLP~eE~~~~~~~~~~~gl~~I 137 (248)
T d1geqa_ 63 FKLREAFWIVKEFRRHSSTPIVLMT-----YYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTV 137 (248)
T ss_dssp CCHHHHHHHHHHHHTTCCCCEEEEE-----CHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEE
T ss_pred ccHHHHHHHHHHHhhcCCCcEEEEe-----ccccccccCHHHHhhhhcccCeeEEeccCCcHHHHHHHHhhccccCcceE
Confidence 4667777777777654323333433 222333334566666666666654333332 22334556667788777
Q ss_pred ec-CCCchHHHHhccCC------------C------CCHHHHHHHHHHHHHcCCceeecEEeec-CCCHHHHHHHHH
Q 022946 199 NH-NLDTSREFYSKIIT------------T------RSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLH 255 (289)
Q Consensus 199 ~i-~let~~~~~~~i~~------------~------~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-get~ed~~~~l~ 255 (289)
.+ +..|.++..+++.. + ...+.+.+.++.+|+.. ..-+.+|+ -.++|+....+.
T Consensus 138 ~lvaPtt~~~ri~~i~~~s~gFiY~vs~~GvTG~~~~~~~~~~~~v~~vk~~t---~~Pv~vGFGI~~~e~v~~~~~ 211 (248)
T d1geqa_ 138 FLAAPNTPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRIC---RNKVAVGFGVSKREHVVSLLK 211 (248)
T ss_dssp EEECTTCCHHHHHHHHHHCSSEEEEECCC-------CCCHHHHHHHHHHHHHC---SSCEEEESCCCSHHHHHHHHH
T ss_pred EEecccchhHHHHHHHhcCCCeEEEEecccccccchhhhhhHHHHHHHHhhhc---ccceeeecccCCHHHHHHHHh
Confidence 75 44444443333311 1 12357788888888863 23457899 457777766655
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=83.15 E-value=3.6 Score=30.67 Aligned_cols=70 Identities=9% Similarity=0.052 Sum_probs=47.3
Q ss_pred HHHHcCCcEEEEecccCCCC-CCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCC
Q 022946 133 KAKEAGSTRFCMGAAWRDTI-GRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 133 ~~~~~g~~~i~i~~~~~~~~-ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
.+.+.|++-+..+..+.... .........++.++.++ ...+.+....|..+.+.+.++.++|+|.|.+|=
T Consensus 134 ~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iPVia~GGI~t~~d~~~~~~~GAdgV~iGs 205 (222)
T d1y0ea_ 134 NAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMDLGVHCSVVGG 205 (222)
T ss_dssp HHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEEESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred HHHHcCCCeEEEeccCCcccccCccchhhHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEch
Confidence 44567888775533221111 11223345567777666 568888888998899999999999999999874
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=83.11 E-value=5.2 Score=31.23 Aligned_cols=46 Identities=7% Similarity=0.159 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHhc-CceEEEeCCCCCHHHHHHHHHcCCCeEecCC
Q 022946 157 NFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 157 ~~~~l~e~i~~ik~~-~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
....+.+.++.+|+. ..++.+--|.-+.+.++.+.++|.|.+-+|=
T Consensus 184 ~~~~~~~~i~~ik~~t~~Pi~vGFGI~~~e~v~~~~~~gaDGvIVGS 230 (261)
T d1rd5a_ 184 VNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGS 230 (261)
T ss_dssp BCTHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEECH
T ss_pred chhHHHHHHHHhhhccCCCeEEEcCCCCHHHHHHHHhcCCCEEEECH
Confidence 335666677777743 6677777888899999999999899888874
|
| >d1vlia2 c.1.10.6 (A:2-296) Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: NeuB-like domain: Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=82.83 E-value=8.7 Score=30.35 Aligned_cols=117 Identities=18% Similarity=0.145 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCC-C-Cc---------------------hhHHHHHHHHHHHHhcCceEEEeC
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-G-RK---------------------TNFNQILEYVKDIRDMGMEVCCTL 179 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~-g-e~---------------------~~~~~l~e~i~~ik~~~~~i~~~~ 179 (289)
+.+...+.++.+.+.|++.|-|+.-..+.. . ++ ...+++.++.+..++.++.+.++.
T Consensus 29 ~~~~ak~lI~~A~~sGAdaVKFQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~els~~~~~~l~~~~k~~gi~~~~s~ 108 (295)
T d1vlia2 29 KLDQAFALIDAAAEAGADAVKFQMFQADRMYQKDPGLYKTAAGKDVSIFSLVQSMEMPAEWILPLLDYCREKQVIFLSTV 108 (295)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEECCBCGGGGTSCCC---------CCCHHHHGGGBSSCGGGHHHHHHHHHHTTCEEECBC
T ss_pred cHHHHHHHHHHHHHcCCCEEEEeeecchhceecccccccccCcccccccccchheecCHHHhhhHHHHhhhcccceeeec
Confidence 668888888888999999998875221100 0 00 122555667777778888887665
Q ss_pred CCCCHHHHHHHHHcCCCeEecC-CCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec-CCCHHHHHHHHHHH
Q 022946 180 GMLEKHQAIELKKAGLTAYNHN-LDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTL 257 (289)
Q Consensus 180 g~l~~e~l~~L~~aG~~~v~i~-let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-get~ed~~~~l~~l 257 (289)
.+.+.++.+.+.|++.+-++ -+.. + .+.|+.+.+.+.++ ++.. +-+.+++...++.+
T Consensus 109 --fd~~s~~~l~~l~~~~iKIaS~d~~-----------n----~~Li~~i~k~~kpv----iistG~~~~~ei~~~~~~~ 167 (295)
T d1vlia2 109 --CDEGSADLLQSTSPSAFKIASYEIN-----------H----LPLLKYVARLNRPM----IFSTAGAEISDVHEAWRTI 167 (295)
T ss_dssp --CSHHHHHHHHTTCCSCEEECGGGTT-----------C----HHHHHHHHTTCSCE----EEECTTCCHHHHHHHHHHH
T ss_pred --ccceeeeeecccCcceeEecccccc-----------c----HHHHHHHHhcCCch----heechhhhhhhHHHHHhHh
Confidence 66889999999999988763 3332 1 23344444455443 3333 44555566666555
Q ss_pred hcC
Q 022946 258 ATL 260 (289)
Q Consensus 258 ~~l 260 (289)
...
T Consensus 168 ~~~ 170 (295)
T d1vlia2 168 RAE 170 (295)
T ss_dssp HTT
T ss_pred hhc
Confidence 543
|
| >d2zdra2 c.1.10.6 (A:2-281) Capsule biosynthesis protein SiaC, N-terminal domain {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: NeuB-like domain: Capsule biosynthesis protein SiaC, N-terminal domain species: Neisseria meningitidis [TaxId: 487]
Probab=82.21 E-value=9.2 Score=29.92 Aligned_cols=110 Identities=15% Similarity=0.206 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCC-------------CCCC---------chhHHHHHHHHHHHHhcCceEEEeCC
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRD-------------TIGR---------KTNFNQILEYVKDIRDMGMEVCCTLG 180 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~-------------~~ge---------~~~~~~l~e~i~~ik~~~~~i~~~~g 180 (289)
+.+...+.++.+...|++.|-|+.-..+ .... .....+..++.+..++.++.+.++.
T Consensus 32 d~~~a~~lI~~a~~sGadaVKfQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~l~~~~k~~~i~~~~s~- 110 (280)
T d2zdra2 32 SLKTAFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNEEDEIKLKEYVESKGMIFISTP- 110 (280)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCHHHHHHHHHHHHHTTCEEEEEE-
T ss_pred CHHHHHHHHHHHHHhCCCEEEecCcccchhcccccccccccccccccccccccccccchhhHHHHHHHHhcCCcccccc-
Confidence 6788888889999999999988752100 0000 0122556666677777888887765
Q ss_pred CCCHHHHHHHHHcCCCeEec-CCCch-HHHHhccCC----------CCCHHHHHHHHHHHHHcCCc
Q 022946 181 MLEKHQAIELKKAGLTAYNH-NLDTS-REFYSKIIT----------TRSYDERLETLKHVREAGIN 234 (289)
Q Consensus 181 ~l~~e~l~~L~~aG~~~v~i-~let~-~~~~~~i~~----------~~~~~~~~~~i~~~~~~Gi~ 234 (289)
.+.+.++.+.+.|++.+-+ +-+.. -.+++.+.. ..+.+++.++++.+.+.+.+
T Consensus 111 -fd~~s~~~~~~~~~~~~KIaS~d~~n~~Li~~i~k~~kpiiiStG~s~~~EI~~av~~~~~~~~~ 175 (280)
T d2zdra2 111 -FSRAAALRLQRMDIPAYKIGSGECNNYPLIKLVASFGKPIILSTGMNSIESIKKSVEIIREAGVP 175 (280)
T ss_dssp -CSHHHHHHHHHHTCSCEEECGGGTTCHHHHHHHHTTCSCEEEECTTCCHHHHHHHHHHHHHHTCC
T ss_pred -chhhcccccccccccceeccchhccccHhhhhhhhccCceeecccccchhHhhhhhhhhhhcccc
Confidence 5688899999999998887 34433 333333321 12455556666555555543
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=81.91 E-value=3.5 Score=33.50 Aligned_cols=80 Identities=13% Similarity=0.014 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcC-CCeEe
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAG-LTAYN 199 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG-~~~v~ 199 (289)
.+.++.+..++.+.+.|++.+.+.++......-...-....+..+.+| ..++.+....+..+.+.++++.+.| +|.|.
T Consensus 225 ~~~~~~~~~~~~l~~~g~d~~~~s~g~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~ 304 (337)
T d1z41a1 225 LDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIF 304 (337)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEE
T ss_pred cchhhhHHHHHHHHHcCCcccccccccccccccccCCcccHHHHHHHHHhcCceEEEeCCcCCHHHHHHHHHCCCcceeh
Confidence 467777777777778888777665543211100000012233344444 2356665555556788887777776 77777
Q ss_pred cC
Q 022946 200 HN 201 (289)
Q Consensus 200 i~ 201 (289)
++
T Consensus 305 ~g 306 (337)
T d1z41a1 305 IG 306 (337)
T ss_dssp EC
T ss_pred hh
Confidence 66
|
| >d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=81.53 E-value=4.9 Score=31.07 Aligned_cols=86 Identities=19% Similarity=0.208 Sum_probs=49.5
Q ss_pred ceEEEeCCC--CCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHH-HHcCCceeecEEe-ecCCCH
Q 022946 173 MEVCCTLGM--LEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHV-REAGINVCSGGII-GLGEAE 247 (289)
Q Consensus 173 ~~i~~~~g~--l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~-~~~Gi~v~~~~i~-Glget~ 247 (289)
.++.+|.|. .+.+.+..|.++|++.+.+++-.. .+. ..++++.++.+ ++.|..+...+=+ |-.-|.
T Consensus 4 TKIIaTiGPas~~~~~l~~li~aGvdv~RlN~SHg~~~~---------~~~~i~~ir~~~~~~~~~~~I~~Dl~gp~lte 74 (246)
T d1e0ta2 4 TKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAE---------HGQRIQNLRNVMSKTGKTAAILLDTKGPALAE 74 (246)
T ss_dssp SEEEEECCGGGCSHHHHHHHHHHTEEEEEEETTSSCHHH---------HHHHHHHHHHHHHHHTCCCEEEEECCCCSSCH
T ss_pred CeEEEeeCCCcCCHHHHHHHHHCCCCEEEEECCCCCHHH---------HHHHHHHHHHHHHHcCCCCccccccccccccc
Confidence 356677775 688999999999999887776432 111 22334444432 3356554433222 224455
Q ss_pred HHHHHHHHHHhcCCCCCCeeeec
Q 022946 248 EDRVGLLHTLATLPTHPESVPIN 270 (289)
Q Consensus 248 ed~~~~l~~l~~l~~~~~~v~i~ 270 (289)
.|. +.+.+..++ +++.+.++
T Consensus 75 kD~-~~i~~a~~~--~vD~ialS 94 (246)
T d1e0ta2 75 KDK-QDLIFGCEQ--GVDFVAAS 94 (246)
T ss_dssp HHH-HHHHHHHHH--TCSEEEES
T ss_pred Ccc-hhhhHHHHc--CCCEEEEc
Confidence 665 344666666 46777654
|
| >d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.51 E-value=5.6 Score=31.11 Aligned_cols=87 Identities=17% Similarity=0.121 Sum_probs=54.6
Q ss_pred ceEEEeCCC--CCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHH--cCCceeecEEeec-CCC
Q 022946 173 MEVCCTLGM--LEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVRE--AGINVCSGGIIGL-GEA 246 (289)
Q Consensus 173 ~~i~~~~g~--l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~--~Gi~v~~~~i~Gl-get 246 (289)
.++.+|.|. .+.+.++.|.++|++.+-+++-.. .+ ...++++.++.+.+ .|-.+....-+.. .-+
T Consensus 21 TKIIaTiGPas~~~e~l~~li~aG~dv~RlN~SHg~~~---------~h~~~i~~iR~~~e~~~G~~v~i~~dl~~p~lt 91 (265)
T d1a3xa2 21 TSIIGTIGPKTNNPETLVALRKAGLNIVRMNFSHGSYE---------YHKSVIDNARKSEELYPGRPLAIALDTKGPALS 91 (265)
T ss_dssp SEEEEECCTTTCSHHHHHHHHHHTEEEEEEETTSCCHH---------HHHHHHHHHHHHHHHCCCSCCBCEEECCCCSSC
T ss_pred ceEEEeeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHH---------HHHHHHHHHHHHhhhccCCceeeeccccchhcc
Confidence 357778775 679999999999999887776443 22 13344555555544 2555444333333 667
Q ss_pred HHHHHHHHHHHhcCCCCCCeeeecc
Q 022946 247 EEDRVGLLHTLATLPTHPESVPINA 271 (289)
Q Consensus 247 ~ed~~~~l~~l~~l~~~~~~v~i~~ 271 (289)
+.|..+ +++..+. +++.+.++.
T Consensus 92 ekD~~d-i~~a~~~--~vD~ialSF 113 (265)
T d1a3xa2 92 EKDKED-LRFGVKN--GVHMVFASF 113 (265)
T ss_dssp HHHHHH-HHHHHHT--TCCEECCTT
T ss_pred cchHHH-HHHhhhc--ccceEeecc
Confidence 777655 4676677 578776543
|
| >d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermus thermophilus [TaxId: 274]
Probab=80.91 E-value=6.4 Score=29.61 Aligned_cols=75 Identities=15% Similarity=0.262 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEec
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 200 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i 200 (289)
++.+++.+..+.+.+.|.+.|--..|. .+.| ...+.+.-+.+.++ -.+.+-.+.|.-+.+.+.+|.++|.+++.-
T Consensus 129 L~~~ei~~a~~~a~~aGadfiKTSTG~-~~~g--at~e~v~~m~~~~~-~~~~iKasGGIrt~~~a~~~l~aGa~riGt 203 (211)
T d1ub3a_ 129 FSPEEIARLAEAAIRGGADFLKTSTGF-GPRG--ASLEDVALLVRVAQ-GRAQVKAAGGIRDRETALRMLKAGASRLGT 203 (211)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEECCCSS-SSCC--CCHHHHHHHHHHHT-TSSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred CCHHHHHHHHHHHHHhccceEEecCCC-CCCC--CCHHHHHHHHHHhC-CCceEECcCCCCCHHHHHHHHHHhhhHhcc
Confidence 688999999998999999877654432 2222 23344444444443 234455678889999999999999998764
|
| >d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) species: Pseudomonas stutzeri [TaxId: 316]
Probab=80.47 E-value=1.1 Score=36.26 Aligned_cols=28 Identities=14% Similarity=0.056 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHHcCCceeecEEeec
Q 022946 216 RSYDERLETLKHVREAGINVCSGGIIGL 243 (289)
Q Consensus 216 ~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl 243 (289)
.+.++..+.|+.|++.||+|-.++++.+
T Consensus 90 Gt~~df~~LV~~aH~~GI~VIlD~V~NH 117 (357)
T d1gcya2 90 GSDAQLRQAASALGGAGVKVLYDVVPNH 117 (357)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECCSB
T ss_pred CCHHHHHHHHHHHHhcCCeEEEEEeccc
Confidence 4789999999999999999999999987
|