Citrus Sinensis ID: 022947

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
Protein Sequence
MQQPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMCRHMLLPSLPMLVSEA
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHccccccccccccccccccccccccccccccEEEEEcccccccHHHHHHHHHcccccEEEEEEcccccccEEEccccccccEEEEEcccccHHHHHccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHHcccccccEEEccHHHHHHHHHHHHHHHcccccccEEEEEcccccccEEcccccccccccccHHHHHHHHHHHHcccccHHcccccccHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccEEEEEccccccHHHHHHHHHHcccccEEEEEEcccHHHHHHHHcccccccEEEEEEcHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHHHHHccccccccEEEccHHHHHHHHHHHHHHccccHHHcEccEEEcccHHHEEEcHHHcEccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MQQPTSGANQRIARIAahlhpptlqiegessglgrmdcrakggspgfKVAVLGaaggigqplAMLMKINPLVSVLHLYdvvntpgvtadishmdtnAVVRGFLGQQQLedaltgmdiviipagvprkpgmtrddlfnINAGIVKTLCEGIAKCCPKAIVNlisnpvnstvPIAAEVFkkvgtydpkrllGVTMLDVVRANTFVAEVlgldprevdvpvvgghagvTILPllsqvkpscsltpteiDYLTDriqnggtevveaktgagsaTLSMCRHmllpslpmlvsea
Flexible Loop (DISEMBL)
MQQPTSGANQRIARiaahlhpptlQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAevlgldprevdVPVVGGHAGVTilpllsqvkpsCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMCRHMLlpslpmlvsea
Low Complexity Region (SEG)
MQQPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMCRHMLLPSLPMLVSEA
Disordered region (IsUnstruct)
********************************************PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMCRHMLL**********
Disordered Region (DISOPRED)
************************************************VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMCRHMLLPSLPMLVSE*
Disordered Region (DISEMBL)
**********RIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMCRHMLLPSLPMLVSEA
Disordered Region (DISPRO)
********************************************PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT*****HMLLPSLPMLV***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQQPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMCRHMLLPSLPMLVSEA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	289	2.2.26 [Sep-21-2011]
P19446	356	Malate dehydrogenase, gly	N/A	no	0.934	0.758	0.878	1e-135
P46488	356	Malate dehydrogenase, gly	N/A	no	0.934	0.758	0.878	1e-134
O82399	354	Probable malate dehydroge	yes	no	0.916	0.748	0.857	1e-130
Q9ZP05	354	Malate dehydrogenase, gly	no	no	0.910	0.742	0.845	1e-129
P37228	353	Malate dehydrogenase, gly	no	no	0.923	0.756	0.841	1e-128
Q9XFW3	358	Malate dehydrogenase 2, g	N/A	no	0.920	0.743	0.838	1e-128
Q43743	358	Malate dehydrogenase 1, g	N/A	no	0.920	0.743	0.827	1e-125
Q42972	356	Malate dehydrogenase, gly	yes	no	0.903	0.733	0.839	1e-124
P17783	347	Malate dehydrogenase, mit	N/A	no	0.795	0.662	0.691	1e-86
P83373	339	Malate dehydrogenase, mit	N/A	no	0.795	0.678	0.686	1e-86

>sp|P19446|MDHG_CITLA Malate dehydrogenase, glyoxysomal OS=Citrullus lanatus PE=1 SV=1

 Score =  482 bits (1241), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 238/271 (87%), Positives = 249/271 (91%), Gaps = 1/271 (0%)

Query: 3   QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPL 62
           QP    NQRIARI+AHLHPP  Q+E ESS L R +CRAKGG+PGFKVA+LGAAGGIGQPL
Sbjct: 2   QPIPDVNQRIARISAHLHPPKSQME-ESSALRRANCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 63  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQQQLE ALTGMD++I+PA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPA 120

Query: 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT 182
           GVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP+AIVNLISNPVNSTVPIAAEVFKK GT
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP 242
           YDPKRLLGVTMLDVVRANTFVAEVLGLDPR+VDVPVVGGHAGVTILPLLSQVKP  S T 
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQ 240

Query: 243 TEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
            EI YLTDRIQNGGTEVVEAK GAGSATLSM
Sbjct: 241 EEISYLTDRIQNGGTEVVEAKAGAGSATLSM 271

Citrullus lanatus (taxid: 3654)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 7

>sp|P46488|MDHG_CUCSA Malate dehydrogenase, glyoxysomal OS=Cucumis sativus GN=MDHG PE=2 SV=1

 Score =  478 bits (1231), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/271 (87%), Positives = 249/271 (91%), Gaps = 1/271 (0%)

Query: 3   QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPL 62
           QP    NQRIARI+AHLHPP  Q+E ESS L R +CRAKGG+PGFKVA+LGAAGGIGQPL
Sbjct: 2   QPIPDVNQRIARISAHLHPPKYQME-ESSVLRRANCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 63  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQQQLE ALTGMD+V+IPA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLERALTGMDLVVIPA 120

Query: 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT 182
           GVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP AIVNLISNPVNSTVPIAAEVFKK GT
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPTAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP 242
           YDPKRLLGVTMLDVVRANTFVAEVLGLDPR+V+VPVVGGHAGVTILPLLSQVKP  S T 
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVNVPVVGGHAGVTILPLLSQVKPPSSFTQ 240

Query: 243 TEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
            EI+YLTDRIQNGGTEVVEAK GAGSATLSM
Sbjct: 241 EEINYLTDRIQNGGTEVVEAKAGAGSATLSM 271

Cucumis sativus (taxid: 3659)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|O82399|MDHG2_ARATH Probable malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At2g22780 PE=1 SV=1

 Score =  464 bits (1195), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 228/266 (85%), Positives = 246/266 (92%), Gaps = 1/266 (0%)

Query: 9   NQRIARIAAHLHPPTLQIE-GESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMK 67
           NQRIARI+AHL+PP L  +  + SGL R+ CRAKGGSPGFKVA+LGAAGGIGQPLAMLMK
Sbjct: 4   NQRIARISAHLNPPNLHNQIADGSGLNRVACRAKGGSPGFKVAILGAAGGIGQPLAMLMK 63

Query: 68  INPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRK 127
           +NPLVSVLHLYDV N PGVTADISHMDT+AVVRGFLGQ QLE+ALTGMD+VIIPAGVPRK
Sbjct: 64  MNPLVSVLHLYDVANAPGVTADISHMDTSAVVRGFLGQPQLEEALTGMDLVIIPAGVPRK 123

Query: 128 PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR 187
           PGMTRDDLFNINAGIV+TL E IAKCCPKAIVN+ISNPVNSTVPIAAEVFKK GT+DPK+
Sbjct: 124 PGMTRDDLFNINAGIVRTLSEAIAKCCPKAIVNIISNPVNSTVPIAAEVFKKAGTFDPKK 183

Query: 188 LLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDY 247
           L+GVTMLDVVRANTFVAEV+ LDPREV+VPVVGGHAGVTILPLLSQVKP CS T  EI+Y
Sbjct: 184 LMGVTMLDVVRANTFVAEVMSLDPREVEVPVVGGHAGVTILPLLSQVKPPCSFTQKEIEY 243

Query: 248 LTDRIQNGGTEVVEAKTGAGSATLSM 273
           LTDRIQNGGTEVVEAK GAGSATLSM
Sbjct: 244 LTDRIQNGGTEVVEAKAGAGSATLSM 269

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q9ZP05|MDHG1_ARATH Malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At5g09660 PE=1 SV=1

 Score =  460 bits (1184), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 225/266 (84%), Positives = 245/266 (92%), Gaps = 3/266 (1%)

Query: 8   ANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMK 67
           ANQRIARI+AHL P   Q+E ++S +GR +CRAKGG+PGFKVA+LGAAGGIGQ L++LMK
Sbjct: 7   ANQRIARISAHLTP---QMEAKNSVIGRENCRAKGGNPGFKVAILGAAGGIGQSLSLLMK 63

Query: 68  INPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRK 127
           +NPLVS+LHLYDVVN PGVTAD+SHMDT AVVRGFLG +QLEDALTGMD+VIIPAG+PRK
Sbjct: 64  MNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGIPRK 123

Query: 128 PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR 187
           PGMTRDDLF INAGIVKTLCEG+AKCCP AIVNLISNPVNSTVPIAAEVFKK GTYDPK+
Sbjct: 124 PGMTRDDLFKINAGIVKTLCEGVAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKK 183

Query: 188 LLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDY 247
           LLGVT LDV RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKP  S TP EI+Y
Sbjct: 184 LLGVTTLDVARANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTPQEIEY 243

Query: 248 LTDRIQNGGTEVVEAKTGAGSATLSM 273
           LT+RIQNGGTEVVEAK GAGSATLSM
Sbjct: 244 LTNRIQNGGTEVVEAKAGAGSATLSM 269

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P37228|MDHG_SOYBN Malate dehydrogenase, glyoxysomal OS=Glycine max PE=2 SV=2

 Score =  457 bits (1177), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 228/271 (84%), Positives = 244/271 (90%), Gaps = 4/271 (1%)

Query: 3   QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPL 62
           +  SGA+ RI+RIA HL P   Q E +   L R DCRAKGG  GFKVA+LGAAGGIGQPL
Sbjct: 2   EANSGASDRISRIAGHLRP---QREDDVC-LKRSDCRAKGGVSGFKVAILGAAGGIGQPL 57

Query: 63  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122
           AMLMK+NPLVS+LHLYDVVNTPGVT+DISHMDT AVVRGFLGQQQLEDAL GMD+VIIPA
Sbjct: 58  AMLMKMNPLVSLLHLYDVVNTPGVTSDISHMDTGAVVRGFLGQQQLEDALIGMDLVIIPA 117

Query: 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT 182
           GVPRKPGMTRDDLFNINAGIVKTLCE IAKCCPKAIVN+ISNPVNSTVPIAAEVFK+ GT
Sbjct: 118 GVPRKPGMTRDDLFNINAGIVKTLCEAIAKCCPKAIVNVISNPVNSTVPIAAEVFKRAGT 177

Query: 183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP 242
           YDPKRLLGVTMLDVVRANTFVAEVLG+DPR+VDVPVVGGHAG+TILPLLSQ+KP CS TP
Sbjct: 178 YDPKRLLGVTMLDVVRANTFVAEVLGVDPRDVDVPVVGGHAGITILPLLSQIKPPCSFTP 237

Query: 243 TEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
            EI+YLT RIQNGG EVVEAK GAGSATLSM
Sbjct: 238 KEIEYLTGRIQNGGPEVVEAKAGAGSATLSM 268

Glycine max (taxid: 3847)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q9XFW3|MDHG2_BRANA Malate dehydrogenase 2, glyoxysomal OS=Brassica napus GN=MDH2 PE=3 SV=1

 Score =  456 bits (1174), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 224/267 (83%), Positives = 245/267 (91%), Gaps = 1/267 (0%)

Query: 8   ANQRIARIAAHLHPP-TLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLM 66
           AN+RIA I+AHL P  T Q+E ++S +GR +CRAKGG+PGFKVA+LGAAGGIGQ L++LM
Sbjct: 7   ANKRIAMISAHLQPSFTPQMEAKNSVMGRENCRAKGGNPGFKVAILGAAGGIGQSLSLLM 66

Query: 67  KINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR 126
           K+NPLVS+LHLYDVVN PGVTAD+SHMDT AVVRGFLG +QLEDALTGMD+VIIPAGVPR
Sbjct: 67  KMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGVPR 126

Query: 127 KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK 186
           KPGMTRDDLF INAGIVKTLCEG+AKCCP AIVNLISNPVNSTV IAAEVFKK GTYDPK
Sbjct: 127 KPGMTRDDLFKINAGIVKTLCEGVAKCCPNAIVNLISNPVNSTVAIAAEVFKKAGTYDPK 186

Query: 187 RLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEID 246
           +LLGVT LDV RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKP  S TP+EI+
Sbjct: 187 KLLGVTTLDVARANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTPSEIE 246

Query: 247 YLTDRIQNGGTEVVEAKTGAGSATLSM 273
           YLT+RIQNGGTEVVEAK GAGSATLSM
Sbjct: 247 YLTNRIQNGGTEVVEAKAGAGSATLSM 273

Brassica napus (taxid: 3708)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q43743|MDHG1_BRANA Malate dehydrogenase 1, glyoxysomal OS=Brassica napus GN=MDH1 PE=2 SV=2

 Score =  449 bits (1154), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 221/267 (82%), Positives = 242/267 (90%), Gaps = 1/267 (0%)

Query: 8   ANQRIARIAAHLHPP-TLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLM 66
           A +RIA I+AHL P  T Q+E ++S +G   CRAKGG+PGFKVA+LGAAGGIGQ L++LM
Sbjct: 7   AYKRIAMISAHLQPSFTPQMEAKNSVMGLESCRAKGGNPGFKVAILGAAGGIGQSLSLLM 66

Query: 67  KINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR 126
           K+NPLVS+LHLYDVVN PGVTAD+SHMDT AVVRGFLG +QLEDALTGMD+VIIPAGVPR
Sbjct: 67  KMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGVPR 126

Query: 127 KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK 186
           KPGMTRDDLF INAGIV+TLCEG+AKCCP AIVNLISNPVNSTV IAAEVFKK GTYDPK
Sbjct: 127 KPGMTRDDLFKINAGIVRTLCEGVAKCCPNAIVNLISNPVNSTVAIAAEVFKKAGTYDPK 186

Query: 187 RLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEID 246
           +LLGVT LDV RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKP  S TP+EI+
Sbjct: 187 KLLGVTTLDVARANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTPSEIE 246

Query: 247 YLTDRIQNGGTEVVEAKTGAGSATLSM 273
           YLT+RIQNGGTEVVEAK GAGSATLSM
Sbjct: 247 YLTNRIQNGGTEVVEAKAGAGSATLSM 273

Brassica napus (taxid: 3708)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q42972|MDHG_ORYSJ Malate dehydrogenase, glyoxysomal OS=Oryza sativa subsp. japonica GN=Os12g0632700 PE=1 SV=3

 Score =  445 bits (1145), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 220/262 (83%), Positives = 238/262 (90%), Gaps = 1/262 (0%)

Query: 12  IARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPL 71
           + R+A+HL PP  Q+E ES  L   +CRAKG +PGFKVA+LGA+GGIGQPLA+LMK+NPL
Sbjct: 11  MERLASHLRPPASQME-ESPLLRGSNCRAKGAAPGFKVAILGASGGIGQPLALLMKMNPL 69

Query: 72  VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMT 131
           VSVLHLYDVVNTPGVTADISHM+T AVVRGFLGQ QLE+ALTGMD+VIIPAGVPRKPGMT
Sbjct: 70  VSVLHLYDVVNTPGVTADISHMNTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMT 129

Query: 132 RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV 191
           RDDLFNINAGIV+TLCEGIAKCCP AIVN+ISNPVNSTVPIAAEVFKK GTYDPKRLLGV
Sbjct: 130 RDDLFNINAGIVRTLCEGIAKCCPNAIVNVISNPVNSTVPIAAEVFKKAGTYDPKRLLGV 189

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDR 251
           T LDVVRANTFVAEVLGLDPR+V+VPV+GGHAGVTILPLLSQV P CS T  EI YLT R
Sbjct: 190 TTLDVVRANTFVAEVLGLDPRDVNVPVIGGHAGVTILPLLSQVNPPCSFTSEEISYLTTR 249

Query: 252 IQNGGTEVVEAKTGAGSATLSM 273
           IQNGGTEVVEAK GAGSATLSM
Sbjct: 250 IQNGGTEVVEAKAGAGSATLSM 271

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P17783|MDHM_CITLA Malate dehydrogenase, mitochondrial OS=Citrullus lanatus GN=MMDH PE=1 SV=1

 Score =  320 bits (819), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 159/230 (69%), Positives = 183/230 (79%)

Query: 45  PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG 104
           P  KVAVLGAAGGIGQPLA+LMK+NPLVS L LYD+  TPGV AD+ H++T + V G++G
Sbjct: 33  PERKVAVLGAAGGIGQPLALLMKLNPLVSKLALYDIAGTPGVAADVGHVNTRSEVTGYVG 92

Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
           ++QL  AL G D+VIIPAGVPRKPGMTRDDLFNINAGIVK+LC  IAK CP A++N+ISN
Sbjct: 93  EEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIAKYCPNALINMISN 152

Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
           PVNSTVPIAAEVFKK GTYD K+L GVT LDVVRA TF A    +   EV+VPV+GGHAG
Sbjct: 153 PVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVPVAEVNVPVIGGHAG 212

Query: 225 VTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMC 274
           +TILPL SQ  P  +L+   I  LT R Q+GGTEVVEAK G GSATLSM 
Sbjct: 213 ITILPLFSQATPRANLSDDTIVALTKRTQDGGTEVVEAKAGKGSATLSMA 262

Citrullus lanatus (taxid: 3654)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P83373|MDHM_FRAAN Malate dehydrogenase, mitochondrial OS=Fragaria ananassa GN=MMDHI PE=1 SV=1

 Score =  319 bits (818), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 158/230 (68%), Positives = 183/230 (79%)

Query: 45  PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG 104
           P  KVAVLGAAGGIGQPLA+LMK+NPLVS L LYD+  TPGV AD+SH++T + V+G+ G
Sbjct: 25  PQRKVAVLGAAGGIGQPLALLMKLNPLVSQLSLYDIAGTPGVAADVSHINTRSEVKGYAG 84

Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
           ++QL +AL G D+VIIPAGVPRKPGMTRDDLFNINAGIV++L   IAK CP AI+N+ISN
Sbjct: 85  EEQLGEALEGCDVVIIPAGVPRKPGMTRDDLFNINAGIVRSLTAAIAKYCPHAIINMISN 144

Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
           PVNSTVPIA+EV KK G YD K+L GVT LDVVRA TF A   G+   EV+VPVVGGHAG
Sbjct: 145 PVNSTVPIASEVLKKAGVYDEKKLFGVTTLDVVRAKTFYAGKAGVPVAEVNVPVVGGHAG 204

Query: 225 VTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMC 274
           +TILPL SQ  P  +L+   I  LT R Q+GGTEVVEAK G GSATLSM 
Sbjct: 205 ITILPLFSQATPKANLSDDYIKALTKRTQDGGTEVVEAKAGKGSATLSMA 254

Fragaria ananassa (taxid: 3747)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	289
359496625	356	PREDICTED: malate dehydrogenase, glyoxys	0.934	0.758	0.904	1e-138
359475502	356	PREDICTED: malate dehydrogenase, glyoxys	0.934	0.758	0.878	1e-134
60593475	362	Chain A, Mature And Translocatable Forms	0.934	0.745	0.878	1e-134
126894	356	RecName: Full=Malate dehydrogenase, glyo	0.934	0.758	0.878	1e-134
255562058	356	malate dehydrogenase, putative [Ricinus	0.927	0.752	0.877	1e-133
449451347	356	PREDICTED: malate dehydrogenase, glyoxys	0.934	0.758	0.878	1e-132
1170897	356	RecName: Full=Malate dehydrogenase, glyo	0.934	0.758	0.878	1e-132
224097202	354	predicted protein [Populus trichocarpa]	0.930	0.759	0.853	1e-132
357482443	358	Malate dehydrogenase, glyoxysomal [Medic	0.941	0.759	0.857	1e-131
118489009	354	unknown [Populus trichocarpa x Populus d	0.923	0.754	0.865	1e-130

>gi|359496625|ref|XP_002263670.2| PREDICTED: malate dehydrogenase, glyoxysomal [Vitis vinifera] gi|297739396|emb|CBI29427.3| unnamed protein product [Vitis vinifera]

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 245/271 (90%), Positives = 254/271 (93%), Gaps = 1/271 (0%)

Query: 3   QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPL 62
            PTS ANQRIARI+AHL P   Q+ GESSGL R +CRAKGG+PGFKVA+LGAAGGIGQPL
Sbjct: 2   HPTSDANQRIARISAHLQPSNFQM-GESSGLSRENCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 63  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122
           AMLMK+NPLVSVLHLYDVVNTPGVT+DISHMDT AVVRGFLGQQQLEDALTGMD+VIIPA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNTPGVTSDISHMDTGAVVRGFLGQQQLEDALTGMDLVIIPA 120

Query: 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT 182
           GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP AIVNLISNPVNSTVPIAAEVFKK GT
Sbjct: 121 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP 242
           +DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKP CS TP
Sbjct: 181 FDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPCSFTP 240

Query: 243 TEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
            EIDYLT RIQNGGTEVVEAK GAGSATLSM
Sbjct: 241 EEIDYLTARIQNGGTEVVEAKAGAGSATLSM 271

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475502|ref|XP_003631692.1| PREDICTED: malate dehydrogenase, glyoxysomal [Vitis vinifera] gi|147774268|emb|CAN65552.1| hypothetical protein VITISV_033330 [Vitis vinifera] gi|297736349|emb|CBI25072.3| unnamed protein product [Vitis vinifera]

 Score =  482 bits (1241), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/271 (87%), Positives = 251/271 (92%), Gaps = 1/271 (0%)

Query: 3   QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPL 62
           QPT+ ANQRIAR++AHL+P   Q+E ESS L R +CRAKGG+PGFKVA+LGAAGGIGQPL
Sbjct: 2   QPTAEANQRIARLSAHLYPSVRQME-ESSVLRRANCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 63  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQ QLE ALTGMD+VIIPA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQPQLESALTGMDLVIIPA 120

Query: 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT 182
           GVPRKPGMTRDDLFNINAGIV+TLCEGIAKCCP AIVNLISNPVNSTVPIAAEVFKK GT
Sbjct: 121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP 242
           YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGH+GVTILPLLSQVKP CS TP
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHSGVTILPLLSQVKPPCSFTP 240

Query: 243 TEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
            E  YLT+RIQNGGTEVVEAK GAGSATLSM
Sbjct: 241 EETQYLTNRIQNGGTEVVEAKAGAGSATLSM 271

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|60593475|pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures gi|60593476|pdb|1SEV|B Chain B, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures

 Score =  482 bits (1241), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/271 (87%), Positives = 249/271 (91%), Gaps = 1/271 (0%)

Query: 3   QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPL 62
           QP    NQRIARI+AHLHPP  Q+E ESS L R +CRAKGG+PGFKVA+LGAAGGIGQPL
Sbjct: 2   QPIPDVNQRIARISAHLHPPKSQME-ESSALRRANCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 63  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQQQLE ALTGMD++I+PA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPA 120

Query: 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT 182
           GVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP+AIVNLISNPVNSTVPIAAEVFKK GT
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP 242
           YDPKRLLGVTMLDVVRANTFVAEVLGLDPR+VDVPVVGGHAGVTILPLLSQVKP  S T 
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQ 240

Query: 243 TEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
            EI YLTDRIQNGGTEVVEAK GAGSATLSM
Sbjct: 241 EEISYLTDRIQNGGTEVVEAKAGAGSATLSM 271

Source: Citrullus lanatus

Species: Citrullus lanatus

Genus: Citrullus

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|126894|sp|P19446.1|MDHG_CITLA RecName: Full=Malate dehydrogenase, glyoxysomal; Flags: Precursor gi|167284|gb|AAA33041.1| glyoxysomal malate dehydrogenase precursor (EC 1.1.1.37) [Citrullus lanatus subsp. vulgaris]

 Score =  482 bits (1241), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/271 (87%), Positives = 249/271 (91%), Gaps = 1/271 (0%)

Query: 3   QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPL 62
           QP    NQRIARI+AHLHPP  Q+E ESS L R +CRAKGG+PGFKVA+LGAAGGIGQPL
Sbjct: 2   QPIPDVNQRIARISAHLHPPKSQME-ESSALRRANCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 63  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQQQLE ALTGMD++I+PA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPA 120

Query: 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT 182
           GVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP+AIVNLISNPVNSTVPIAAEVFKK GT
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP 242
           YDPKRLLGVTMLDVVRANTFVAEVLGLDPR+VDVPVVGGHAGVTILPLLSQVKP  S T 
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQ 240

Query: 243 TEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
            EI YLTDRIQNGGTEVVEAK GAGSATLSM
Sbjct: 241 EEISYLTDRIQNGGTEVVEAKAGAGSATLSM 271

Source: Citrullus lanatus subsp. vulgaris

Species: Citrullus lanatus

Genus: Citrullus

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562058|ref|XP_002522037.1| malate dehydrogenase, putative [Ricinus communis] gi|223538636|gb|EEF40237.1| malate dehydrogenase, putative [Ricinus communis]

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 236/269 (87%), Positives = 250/269 (92%), Gaps = 1/269 (0%)

Query: 5   TSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAM 64
           ++ A QRIARI+AHLHPP  Q+EG SS L R DCRAKGGSPGFKVA+LGAAGGIGQPLAM
Sbjct: 4   SAEAAQRIARISAHLHPPNFQMEG-SSALKRADCRAKGGSPGFKVAILGAAGGIGQPLAM 62

Query: 65  LMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV 124
           LMK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQ QLE+ALTGMD+V+IPAGV
Sbjct: 63  LMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVVIPAGV 122

Query: 125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYD 184
           PRKPGMTRDDLFNINAGIV+TLCEGIAKCCP+AIVNLISNPVNSTVPIAAEVFKK GTYD
Sbjct: 123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYD 182

Query: 185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTE 244
           PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKP CS T  E
Sbjct: 183 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPCSFTSEE 242

Query: 245 IDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
            +YLT RIQ+GGTEVV+AK GAGSATLSM
Sbjct: 243 TEYLTKRIQDGGTEVVQAKAGAGSATLSM 271

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451347|ref|XP_004143423.1| PREDICTED: malate dehydrogenase, glyoxysomal-like [Cucumis sativus] gi|449499834|ref|XP_004160930.1| PREDICTED: malate dehydrogenase, glyoxysomal-like [Cucumis sativus]

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 238/271 (87%), Positives = 249/271 (91%), Gaps = 1/271 (0%)

Query: 3   QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPL 62
           QP    NQRIARI+AHLHPP  Q+E ESS L R +CRAKGG+PGFKVA+LGAAGGIGQPL
Sbjct: 2   QPIPDVNQRIARISAHLHPPKYQME-ESSVLRRANCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 63  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQQQLE ALTGMD+V+IPA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLVVIPA 120

Query: 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT 182
           GVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP AIVNLISNPVNSTVPIAAEVFKK GT
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPTAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP 242
           YDPKRLLGVTMLDVVRANTFVAEVLGLDPR+V+VPVVGGHAGVTILPLLSQVKP  S T 
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVNVPVVGGHAGVTILPLLSQVKPPSSFTQ 240

Query: 243 TEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
            EI+YLTDRIQNGGTEVVEAK GAGSATLSM
Sbjct: 241 EEINYLTDRIQNGGTEVVEAKAGAGSATLSM 271

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1170897|sp|P46488.1|MDHG_CUCSA RecName: Full=Malate dehydrogenase, glyoxysomal; Flags: Precursor gi|695311|gb|AAC41647.1| glyoxysomal malate dehydrogenase [Cucumis sativus]

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 238/271 (87%), Positives = 249/271 (91%), Gaps = 1/271 (0%)

Query: 3   QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPL 62
           QP    NQRIARI+AHLHPP  Q+E ESS L R +CRAKGG+PGFKVA+LGAAGGIGQPL
Sbjct: 2   QPIPDVNQRIARISAHLHPPKYQME-ESSVLRRANCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 63  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQQQLE ALTGMD+V+IPA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLERALTGMDLVVIPA 120

Query: 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT 182
           GVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP AIVNLISNPVNSTVPIAAEVFKK GT
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPTAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP 242
           YDPKRLLGVTMLDVVRANTFVAEVLGLDPR+V+VPVVGGHAGVTILPLLSQVKP  S T 
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVNVPVVGGHAGVTILPLLSQVKPPSSFTQ 240

Query: 243 TEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
            EI+YLTDRIQNGGTEVVEAK GAGSATLSM
Sbjct: 241 EEINYLTDRIQNGGTEVVEAKAGAGSATLSM 271

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097202|ref|XP_002310874.1| predicted protein [Populus trichocarpa] gi|222853777|gb|EEE91324.1| predicted protein [Populus trichocarpa]

 Score =  476 bits (1224), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 233/273 (85%), Positives = 250/273 (91%), Gaps = 4/273 (1%)

Query: 1   MQQPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQ 60
           MQQ    +N R+ARIAAH++PP LQ+  E  GL R++CRAKG S GFKVA+LGAAGGIGQ
Sbjct: 1   MQQ----SNLRVARIAAHINPPNLQMVEEDLGLERVNCRAKGASSGFKVAILGAAGGIGQ 56

Query: 61  PLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII 120
           PLAMLMK+NPLVS+LHLYDVVN PGVTADISHMDT+AVVRGFLGQQQLEDAL GMD+VII
Sbjct: 57  PLAMLMKMNPLVSLLHLYDVVNAPGVTADISHMDTSAVVRGFLGQQQLEDALIGMDLVII 116

Query: 121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKV 180
           PAGVPRKPGMTRDDLFNINAGIVKTLCE IAKCCPKAIVN+ISNPVNSTVPIAAEVFKK 
Sbjct: 117 PAGVPRKPGMTRDDLFNINAGIVKTLCEAIAKCCPKAIVNIISNPVNSTVPIAAEVFKKA 176

Query: 181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSL 240
           G +DPKR+LGVTMLDVVRANTFVAE++GLDPREVDVPVVGGHAGVTILPLLSQVKP CS 
Sbjct: 177 GVFDPKRVLGVTMLDVVRANTFVAEIMGLDPREVDVPVVGGHAGVTILPLLSQVKPLCSF 236

Query: 241 TPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
           T  EIDYLTDRIQNGGTEVVEAK GAGSATLSM
Sbjct: 237 TQKEIDYLTDRIQNGGTEVVEAKAGAGSATLSM 269

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482443|ref|XP_003611508.1| Malate dehydrogenase, glyoxysomal [Medicago truncatula] gi|355512843|gb|AES94466.1| Malate dehydrogenase, glyoxysomal [Medicago truncatula]

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 234/273 (85%), Positives = 250/273 (91%), Gaps = 1/273 (0%)

Query: 3   QPTSGANQRIARIAAHLHPPTLQI-EGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQP 61
           +P S AN RI RIA+HL+PP L++ E   S L  + CRAKGGSPGFKVA+LGAAGGIGQP
Sbjct: 2   EPNSYANSRITRIASHLNPPNLKMNEHGGSSLTNVHCRAKGGSPGFKVAILGAAGGIGQP 61

Query: 62  LAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP 121
           L+MLMKINPLVSVLHLYDVVNTPGVT+DISHMDT+AVVRGFLGQ QLEDALTGMD+VIIP
Sbjct: 62  LSMLMKINPLVSVLHLYDVVNTPGVTSDISHMDTSAVVRGFLGQNQLEDALTGMDLVIIP 121

Query: 122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG 181
           AGVPRKPGMTRDDLFNINAGIVKTLCE IAK CPKAIVNLISNPVNSTVPIAAEVFK+ G
Sbjct: 122 AGVPRKPGMTRDDLFNINAGIVKTLCEAIAKQCPKAIVNLISNPVNSTVPIAAEVFKRAG 181

Query: 182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLT 241
           TYDPKRLLGVTMLDVVRANTFVAEV+GLDPR+VDVPVVGGHAG+TILPLLSQVKP  S T
Sbjct: 182 TYDPKRLLGVTMLDVVRANTFVAEVMGLDPRDVDVPVVGGHAGITILPLLSQVKPPSSFT 241

Query: 242 PTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMC 274
           P EI+YLTDRIQNGGTEVVEAK GAGSATLSM 
Sbjct: 242 PKEIEYLTDRIQNGGTEVVEAKAGAGSATLSMA 274

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489009|gb|ABK96312.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 232/268 (86%), Positives = 245/268 (91%), Gaps = 1/268 (0%)

Query: 6   SGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAML 65
           S ANQRIAR++AHL PP  Q+E ES  L R DCRAKGG+PGFKVA+LGAAGGIGQPLAML
Sbjct: 3   SVANQRIARVSAHLQPPNSQME-ESCVLKRTDCRAKGGAPGFKVAILGAAGGIGQPLAML 61

Query: 66  MKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP 125
           MK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQ QLE+ALTGMD+VIIPAGVP
Sbjct: 62  MKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 121

Query: 126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDP 185
           RKPGMTRDDLF INAGIV+TLCEG+AKCCP AIVNLISNPVNSTVPIAAEVFKK GTYDP
Sbjct: 122 RKPGMTRDDLFKINAGIVRTLCEGVAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDP 181

Query: 186 KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEI 245
           KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ KP  S TP E 
Sbjct: 182 KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQAKPPSSFTPEET 241

Query: 246 DYLTDRIQNGGTEVVEAKTGAGSATLSM 273
           +YLT RIQ+GGTEVV+AK GAGSATLSM
Sbjct: 242 EYLTKRIQDGGTEVVQAKAGAGSATLSM 269

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	289
TAIR|locus:2062240	354	PMDH1 "peroxisomal NAD-malate	0.916	0.748	0.857	3.7e-119
TAIR|locus:2144781	363	PMDH2 "peroxisomal NAD-malate	0.910	0.724	0.845	1.8e-117
TAIR|locus:2009605	341	mMDH1 "mitochondrial malate de	0.809	0.686	0.670	2e-79
TAIR|locus:2079177	403	MDH "malate dehydrogenase" [Ar	0.785	0.563	0.682	4.2e-79
TAIR|locus:2086340	341	mMDH2 "mitochondrial malate de	0.792	0.671	0.681	3e-78
UNIPROTKB|F1PYG8	338	MDH2 "Malate dehydrogenase" [C	0.782	0.668	0.654	4.3e-77
UNIPROTKB|E1BVT3	337	MDH2 "Malate dehydrogenase" [G	0.816	0.700	0.634	9e-77
UNIPROTKB|J9NY79	338	J9NY79 "Malate dehydrogenase"	0.782	0.668	0.650	1.5e-76
FB|FBgn0262559	336	Mdh2 "Malate dehydrogenase 2"	0.802	0.690	0.633	2.4e-76
ZFIN|ZDB-GENE-040426-2143	337	mdh2 "malate dehydrogenase 2,	0.782	0.670	0.641	6.3e-76

TAIR|locus:2062240 PMDH1 "peroxisomal NAD-malate dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1173 (418.0 bits), Expect = 3.7e-119, P = 3.7e-119
 Identities = 228/266 (85%), Positives = 246/266 (92%)

Query:     9 NQRIARIAAHLHPPTLQIE-GESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMK 67
             NQRIARI+AHL+PP L  +  + SGL R+ CRAKGGSPGFKVA+LGAAGGIGQPLAMLMK
Sbjct:     4 NQRIARISAHLNPPNLHNQIADGSGLNRVACRAKGGSPGFKVAILGAAGGIGQPLAMLMK 63

Query:    68 INPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRK 127
             +NPLVSVLHLYDV N PGVTADISHMDT+AVVRGFLGQ QLE+ALTGMD+VIIPAGVPRK
Sbjct:    64 MNPLVSVLHLYDVANAPGVTADISHMDTSAVVRGFLGQPQLEEALTGMDLVIIPAGVPRK 123

Query:   128 PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR 187
             PGMTRDDLFNINAGIV+TL E IAKCCPKAIVN+ISNPVNSTVPIAAEVFKK GT+DPK+
Sbjct:   124 PGMTRDDLFNINAGIVRTLSEAIAKCCPKAIVNIISNPVNSTVPIAAEVFKKAGTFDPKK 183

Query:   188 LLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDY 247
             L+GVTMLDVVRANTFVAEV+ LDPREV+VPVVGGHAGVTILPLLSQVKP CS T  EI+Y
Sbjct:   184 LMGVTMLDVVRANTFVAEVMSLDPREVEVPVVGGHAGVTILPLLSQVKPPCSFTQKEIEY 243

Query:   248 LTDRIQNGGTEVVEAKTGAGSATLSM 273
             LTDRIQNGGTEVVEAK GAGSATLSM
Sbjct:   244 LTDRIQNGGTEVVEAKAGAGSATLSM 269

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005777 "peroxisome" evidence=IDA

GO:0031998 "regulation of fatty acid beta-oxidation" evidence=IGI;IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0080093 "regulation of photorespiration" evidence=IMP

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0007031 "peroxisome organization" evidence=RCA

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2144781 PMDH2 "peroxisomal NAD-malate dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1157 (412.3 bits), Expect = 1.8e-117, P = 1.8e-117
 Identities = 225/266 (84%), Positives = 245/266 (92%)

Query:     8 ANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMK 67
             ANQRIARI+AHL P   Q+E ++S +GR +CRAKGG+PGFKVA+LGAAGGIGQ L++LMK
Sbjct:     7 ANQRIARISAHLTP---QMEAKNSVIGRENCRAKGGNPGFKVAILGAAGGIGQSLSLLMK 63

Query:    68 INPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRK 127
             +NPLVS+LHLYDVVN PGVTAD+SHMDT AVVRGFLG +QLEDALTGMD+VIIPAG+PRK
Sbjct:    64 MNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGIPRK 123

Query:   128 PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR 187
             PGMTRDDLF INAGIVKTLCEG+AKCCP AIVNLISNPVNSTVPIAAEVFKK GTYDPK+
Sbjct:   124 PGMTRDDLFKINAGIVKTLCEGVAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKK 183

Query:   188 LLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDY 247
             LLGVT LDV RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKP  S TP EI+Y
Sbjct:   184 LLGVTTLDVARANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTPQEIEY 243

Query:   248 LTDRIQNGGTEVVEAKTGAGSATLSM 273
             LT+RIQNGGTEVVEAK GAGSATLSM
Sbjct:   244 LTNRIQNGGTEVVEAKAGAGSATLSM 269

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0031998 "regulation of fatty acid beta-oxidation" evidence=IGI;IMP

GO:0048046 "apoplast" evidence=IDA

GO:0080093 "regulation of photorespiration" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010304 "PSII associated light-harvesting complex II catabolic process" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

GO:0044242 "cellular lipid catabolic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0042579 "microbody" evidence=ISS

TAIR|locus:2009605 mMDH1 "mitochondrial malate dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 798 (286.0 bits), Expect = 2.0e-79, P = 2.0e-79
 Identities = 157/234 (67%), Positives = 181/234 (77%)

Query:    40 AKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVV 99
             + G  P  KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+ NTPGV AD+ H++T + V
Sbjct:    23 SSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSEV 82

Query:   100 RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV 159
              G++G   L  AL G D+VIIPAGVPRKPGMTRDDLFNINAGIVK LC  IAK CP A++
Sbjct:    83 VGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFNINAGIVKNLCTAIAKYCPHALI 142

Query:   160 NLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV 219
             N+ISNPVNSTVPIAAE+FKK G YD K+L GVT LDVVRA TF A    +   EV+VPV+
Sbjct:   143 NMISNPVNSTVPIAAEIFKKAGMYDEKKLFGVTTLDVVRARTFYAGKANVPVAEVNVPVI 202

Query:   220 GGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
             GGHAGVTILPL SQ  P  +L+   +  LT R Q+GGTEVVEAK G GSATLSM
Sbjct:   203 GGHAGVTILPLFSQATPQANLSSDILTALTKRTQDGGTEVVEAKAGKGSATLSM 256

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IMP

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009409 "response to cold" evidence=IEP

GO:0005618 "cell wall" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0009507 "chloroplast" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0048046 "apoplast" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

TAIR|locus:2079177 MDH "malate dehydrogenase" [Arabidopsis thaliana (taxid:3702)]

 Score = 795 (284.9 bits), Expect = 4.2e-79, P = 4.2e-79
 Identities = 155/227 (68%), Positives = 184/227 (81%)

Query:    47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQ 106
             +KVAVLGAAGGIGQPL++L+K++PLVS LHLYD+ N  GV AD+SH +T + VR F G  
Sbjct:    83 YKVAVLGAAGGIGQPLSLLIKMSPLVSTLHLYDIANVKGVAADLSHCNTPSQVRDFTGPS 142

Query:   107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 166
             +L D L  +++V+IPAGVPRKPGMTRDDLFNINA IVKTL E +A+ CP A +++ISNPV
Sbjct:   143 ELADCLKDVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVAENCPNAFIHIISNPV 202

Query:   167 NSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVT 226
             NSTVPIAAEV KK G YDPK+L GVT LDVVRANTFV++   L   +VDVPV+GGHAG+T
Sbjct:   203 NSTVPIAAEVLKKKGVYDPKKLFGVTTLDVVRANTFVSQKKNLKLIDVDVPVIGGHAGIT 262

Query:   227 ILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
             ILPLLS+ KPS + T  EI  LT RIQN GTEVV+AK GAGSATLSM
Sbjct:   263 ILPLLSKTKPSVNFTDEEIQELTVRIQNAGTEVVDAKAGAGSATLSM 309

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IDA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0010319 "stromule" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2086340 mMDH2 "mitochondrial malate dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 787 (282.1 bits), Expect = 3.0e-78, P = 3.0e-78
 Identities = 156/229 (68%), Positives = 180/229 (78%)

Query:    45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG 104
             P  KV +LGAAGGIGQPL++LMK+NPLVS L LYD+ NTPGV AD+ H++T + V G++G
Sbjct:    28 PDRKVVILGAAGGIGQPLSLLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSQVSGYMG 87

Query:   105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
                L  AL G D+VIIPAGVPRKPGMTRDDLFNINAGIVK L   IAK CP+A+VN+ISN
Sbjct:    88 DDDLGKALEGADLVIIPAGVPRKPGMTRDDLFNINAGIVKNLSIAIAKYCPQALVNMISN 147

Query:   165 PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
             PVNSTVPIAAE+FKK GTYD K+L GVT LDVVRA TF A    ++  EV+VPVVGGHAG
Sbjct:   148 PVNSTVPIAAEIFKKAGTYDEKKLFGVTTLDVVRARTFYAGKSDVNVAEVNVPVVGGHAG 207

Query:   225 VTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
             +TILPL SQ  P  +L+   I  LT R Q+GGTEVVEAK G GSATLSM
Sbjct:   208 ITILPLFSQASPQANLSDDLIRALTKRTQDGGTEVVEAKAGKGSATLSM 256

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IGI

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

UNIPROTKB|F1PYG8 MDH2 "Malate dehydrogenase" [Canis lupus familiaris (taxid:9615)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 148/226 (65%), Positives = 181/226 (80%)

Query:    48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
             KVAVLGA+GGIGQPLA+L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG +Q
Sbjct:    26 KVAVLGASGGIGQPLALLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 85

Query:   108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
             L D L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP+A++ +ISNPVN
Sbjct:    86 LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNASIVATLTAACAQHCPEAMICVISNPVN 145

Query:   168 STVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
             ST+PIA EVFKK G YDP ++ GVT LD+VRANTF+AE+ GLDP  V+VPV+GGHAG TI
Sbjct:   146 STIPIATEVFKKHGAYDPNKIFGVTTLDIVRANTFIAELKGLDPARVNVPVIGGHAGKTI 205

Query:   228 LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
             +PL+SQ  P   L   ++  +T RIQ  GTEVV+AK GAGSATLSM
Sbjct:   206 IPLISQCTPKVDLPQDQLTAVTGRIQEAGTEVVKAKAGAGSATLSM 251

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E1BVT3 MDH2 "Malate dehydrogenase" [Gallus gallus (taxid:9031)]

 Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
 Identities = 151/238 (63%), Positives = 183/238 (76%)

Query:    38 CR--AKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT 95
             CR  A       KVAVLGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T
Sbjct:    13 CRGLATSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIET 72

Query:    96 NAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP 155
              A V+GFLG +QL + L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    AK CP
Sbjct:    73 RANVKGFLGPEQLPECLKGCDVVVIPAGVPRKPGMTRDDLFNTNASIVATLTTACAKHCP 132

Query:   156 KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD 215
             +A++ +ISNPVNST+PI +EVFKK G Y+P R+ GVT LD+VRANTFVAE+ GLDP  V 
Sbjct:   133 EAMICIISNPVNSTIPITSEVFKKHGVYNPNRIFGVTTLDIVRANTFVAELKGLDPARVS 192

Query:   216 VPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
             VPV+GGHAG TI+PL+SQ  P       +++ LT RIQ  GTEVV+AK GAGSATLSM
Sbjct:   193 VPVIGGHAGKTIIPLISQCTPKVDFPQDQLEKLTGRIQEAGTEVVKAKAGAGSATLSM 250

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006475 "internal protein amino acid acetylation" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

UNIPROTKB|J9NY79 J9NY79 "Malate dehydrogenase" [Canis lupus familiaris (taxid:9615)]

 Score = 771 (276.5 bits), Expect = 1.5e-76, P = 1.5e-76
 Identities = 147/226 (65%), Positives = 181/226 (80%)

Query:    48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
             KVAVLGA+GGIGQPLA+L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG +Q
Sbjct:    26 KVAVLGASGGIGQPLALLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 85

Query:   108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
             L D L G D+V+IPAGVPRKPGMTR+DLFN NA IV TL    A+ CP+A++ +ISNPVN
Sbjct:    86 LPDCLKGCDVVVIPAGVPRKPGMTRNDLFNTNASIVATLTAACAQHCPEAMICVISNPVN 145

Query:   168 STVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
             ST+PIA EVFKK G YDP ++ GVT LD+VRANTF+AE+ GLDP  V+VPV+GGHAG TI
Sbjct:   146 STIPIATEVFKKHGAYDPNKIFGVTTLDIVRANTFIAELKGLDPARVNVPVIGGHAGKTI 205

Query:   228 LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
             +PL+SQ  P   L   ++  +T RIQ  GTEVV+AK GAGSATLSM
Sbjct:   206 IPLISQCTPKVDLPQDQLTAVTGRIQEAGTEVVKAKAGAGSATLSM 251

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

FB|FBgn0262559 Mdh2 "Malate dehydrogenase 2" [Drosophila melanogaster (taxid:7227)]

 Score = 769 (275.8 bits), Expect = 2.4e-76, P = 2.4e-76
 Identities = 147/232 (63%), Positives = 180/232 (77%)

Query:    42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG 101
             G    +KV V GAAGGIGQPL++L+K NPLV+ L LYD+V+TPGV AD+SH+DT +   G
Sbjct:    20 GQQNNYKVTVCGAAGGIGQPLSLLLKQNPLVTDLALYDIVHTPGVAADLSHIDTKSKTAG 79

Query:   102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
             F+G  QL D+L G D+V+IPAGVPRKPGMTRDDLFN+NAGI+K +   IAK CPKA+V +
Sbjct:    80 FIGADQLGDSLKGSDVVVIPAGVPRKPGMTRDDLFNVNAGIIKDISNSIAKNCPKALVAI 139

Query:   162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG 221
             I+NPVN+ VPIAAE+ KK G YDPKRL GV+ LDVVRA  F+   LG+DP+ V +PV+GG
Sbjct:   140 ITNPVNTCVPIAAEILKKAGVYDPKRLFGVSTLDVVRARAFIGHALGVDPQTVQIPVIGG 199

Query:   222 HAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
             H+GVTILP+LSQ +P        I+ LT RIQ  GTEVV+AK GAGSATLSM
Sbjct:   200 HSGVTILPVLSQSQPLFKGNQDTIEKLTVRIQEAGTEVVKAKAGAGSATLSM 251

GO:0005739 "mitochondrion" evidence=IDA;TAS

GO:0030060 "L-malate dehydrogenase activity" evidence=ISS;TAS

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0006099 "tricarboxylic acid cycle" evidence=ISS;IDA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0043067 "regulation of programmed cell death" evidence=IMP

GO:0035070 "salivary gland histolysis" evidence=IMP

GO:0016615 "malate dehydrogenase activity" evidence=IDA

GO:0043068 "positive regulation of programmed cell death" evidence=IMP

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IMP

GO:0035209 "pupal development" evidence=IMP

ZFIN|ZDB-GENE-040426-2143 mdh2 "malate dehydrogenase 2, NAD (mitochondrial)" [Danio rerio (taxid:7955)]

 Score = 765 (274.4 bits), Expect = 6.3e-76, P = 6.3e-76
 Identities = 145/226 (64%), Positives = 182/226 (80%)

Query:    48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
             KVAVLGA+GGIGQPL++L+K +PLVS L L+D+ +TPGV AD+SH++T A V+G++G  Q
Sbjct:    25 KVAVLGASGGIGQPLSLLLKNSPLVSELSLFDIAHTPGVAADLSHIETRAHVKGYIGADQ 84

Query:   108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
             L DAL G ++V+IPAGVPRKPGMTRDDLFN NA IV TL +G A+ CP+A++ +ISNPVN
Sbjct:    85 LGDALKGCEVVVIPAGVPRKPGMTRDDLFNTNATIVATLVDGCARHCPQAMICIISNPVN 144

Query:   168 STVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
             ST+PI +EV KK G Y+P ++ GVT LD+VRANTFVAE+ GLDP  V+VPVVGGHAG+TI
Sbjct:   145 STIPITSEVMKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVVGGHAGITI 204

Query:   228 LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
             +PL+SQ  P       ++  LT RIQ  GTEVV+AK GAGSATLSM
Sbjct:   205 IPLISQCTPKVEFPADQLSALTGRIQEAGTEVVKAKAGAGSATLSM 250

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q43743	MDHG1_BRANA	1, ., 1, ., 1, ., 3, 7	0.8277	0.9204	0.7430	N/A	no
Q5NVR2	MDHM_PONAB	1, ., 1, ., 1, ., 3, 7	0.6460	0.7820	0.6686	yes	no
B1LGK2	MDH_ECOSM	1, ., 1, ., 1, ., 3, 7	0.6271	0.7750	0.7179	yes	no
C4ZSX4	MDH_ECOBW	1, ., 1, ., 1, ., 3, 7	0.6271	0.7750	0.7179	yes	no
Q42972	MDHG_ORYSJ	1, ., 1, ., 1, ., 3, 7	0.8396	0.9031	0.7331	yes	no
P08249	MDHM_MOUSE	1, ., 1, ., 1, ., 3, 7	0.6504	0.7820	0.6686	yes	no
Q31WA4	MDH_SHIBS	1, ., 1, ., 1, ., 3, 7	0.6271	0.7750	0.7179	yes	no
Q0TCN0	MDH_ECOL5	1, ., 1, ., 1, ., 3, 7	0.6271	0.7750	0.7179	yes	no
A8A545	MDH_ECOHS	1, ., 1, ., 1, ., 3, 7	0.6271	0.7750	0.7179	yes	no
B7UJW8	MDH_ECO27	1, ., 1, ., 1, ., 3, 7	0.6271	0.7750	0.7179	yes	no
Q1R6A3	MDH_ECOUT	1, ., 1, ., 1, ., 3, 7	0.6271	0.7750	0.7179	yes	no
P46488	MDHG_CUCSA	1, ., 1, ., 1, ., 3, 7	0.8782	0.9342	0.7584	N/A	no
Q32LG3	MDHM_BOVIN	1, ., 1, ., 1, ., 3, 7	0.6415	0.7820	0.6686	yes	no
A1AGC9	MDH_ECOK1	1, ., 1, ., 1, ., 3, 7	0.6271	0.7750	0.7179	yes	no
Q9XFW3	MDHG2_BRANA	1, ., 1, ., 1, ., 3, 7	0.8389	0.9204	0.7430	N/A	no
B7N0M1	MDH_ECO81	1, ., 1, ., 1, ., 3, 7	0.6271	0.7750	0.7179	yes	no
B2U1U9	MDH_SHIB3	1, ., 1, ., 1, ., 3, 7	0.6271	0.7750	0.7179	yes	no
B7MBZ7	MDH_ECO45	1, ., 1, ., 1, ., 3, 7	0.6271	0.7750	0.7179	yes	no
O02640	MDHM_CAEEL	1, ., 1, ., 1, ., 3, 7	0.6190	0.8650	0.7331	yes	no
B7LHU4	MDH_ECO55	1, ., 1, ., 1, ., 3, 7	0.6271	0.7750	0.7179	yes	no
B4F2A1	MDH_PROMH	1, ., 1, ., 1, ., 3, 7	0.6315	0.7750	0.7179	yes	no
P40926	MDHM_HUMAN	1, ., 1, ., 1, ., 3, 7	0.6460	0.7820	0.6686	yes	no
A7ZSD0	MDH_ECO24	1, ., 1, ., 1, ., 3, 7	0.6271	0.7750	0.7179	yes	no
P04636	MDHM_RAT	1, ., 1, ., 1, ., 3, 7	0.6504	0.7820	0.6686	yes	no
Q0T052	MDH_SHIF8	1, ., 1, ., 1, ., 3, 7	0.6271	0.7750	0.7179	yes	no
B1XHK9	MDH_ECODH	1, ., 1, ., 1, ., 3, 7	0.6271	0.7750	0.7179	yes	no
P19446	MDHG_CITLA	1, ., 1, ., 1, ., 3, 7	0.8782	0.9342	0.7584	N/A	no
P00346	MDHM_PIG	1, ., 1, ., 1, ., 3, 7	0.6460	0.7820	0.6686	yes	no
B7NKU9	MDH_ECO7I	1, ., 1, ., 1, ., 3, 7	0.6271	0.7750	0.7179	yes	no
Q3YX11	MDH_SHISS	1, ., 1, ., 1, ., 3, 7	0.6271	0.7750	0.7179	yes	no
O82399	MDHG2_ARATH	1, ., 1, ., 1, ., 3, 7	0.8571	0.9169	0.7485	yes	no
P61890	MDH_ECOL6	1, ., 1, ., 1, ., 3, 7	0.6271	0.7750	0.7179	yes	no
Q7MYW9	MDH_PHOLL	1, ., 1, ., 1, ., 3, 7	0.6157	0.7785	0.7211	yes	no
B5YSW2	MDH_ECO5E	1, ., 1, ., 1, ., 3, 7	0.6271	0.7750	0.7179	yes	no
B1IQP3	MDH_ECOLC	1, ., 1, ., 1, ., 3, 7	0.6271	0.7750	0.7179	yes	no
Q83Q04	MDH_SHIFL	1, ., 1, ., 1, ., 3, 7	0.6271	0.7750	0.7179	yes	no
B7M0U8	MDH_ECO8A	1, ., 1, ., 1, ., 3, 7	0.6271	0.7750	0.7179	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.976
3rd Layer	1.1.1.37	0.991

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	289
PLN00106	323	PLN00106, PLN00106, malate dehydrogenase	0.0
cd01337	310	cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysoma	1e-160
TIGR01772	312	TIGR01772, MDH_euk_gproteo, malate dehydrogenase,	1e-122
PRK05086	312	PRK05086, PRK05086, malate dehydrogenase; Provisio	1e-115
PTZ00325	321	PTZ00325, PTZ00325, malate dehydrogenase; Provisio	1e-106
COG0039	313	COG0039, Mdh, Malate/lactate dehydrogenases [Energ	5e-67
pfam00056	142	pfam00056, Ldh_1_N, lactate/malate dehydrogenase,	2e-56
PRK06223	307	PRK06223, PRK06223, malate dehydrogenase; Reviewed	8e-42
cd01339	300	cd01339, LDH-like_MDH, L-lactate dehydrogenase-lik	4e-41
cd00650	263	cd00650, LDH_MDH_like, NAD-dependent, lactate dehy	1e-39
PTZ00117	319	PTZ00117, PTZ00117, malate dehydrogenase; Provisio	1e-30
cd00300	300	cd00300, LDH_like, L-lactate dehydrogenase-like en	6e-30
pfam02866	173	pfam02866, Ldh_1_C, lactate/malate dehydrogenase,	9e-29
PTZ00082	321	PTZ00082, PTZ00082, L-lactate dehydrogenase; Provi	8e-27
cd05294	309	cd05294, LDH-like_MDH_nadp, A lactate dehydrogenas	3e-26
TIGR01763	305	TIGR01763, MalateDH_bact, malate dehydrogenase, NA	8e-24
cd05291	306	cd05291, HicDH_like, L-2-hydroxyisocapronate dehyd	9e-21
TIGR01771	299	TIGR01771, L-LDH-NAD, L-lactate dehydrogenase	4e-19
TIGR01759	323	TIGR01759, MalateDH-SF1, malate dehydrogenase	2e-17
cd00704	323	cd00704, MDH, Malate dehydrogenase	2e-17
cd05292	308	cd05292, LDH_2, A subgroup of L-lactate dehydrogen	6e-17
cd05290	307	cd05290, LDH_3, A subgroup of L-lactate dehydrogen	2e-16
PRK00066	315	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	6e-14
TIGR01758	324	TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-	1e-12
TIGR01756	313	TIGR01756, LDH_protist, lactate dehydrogenase	3e-12
cd01336	325	cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic an	4e-12
cd05293	312	cd05293, LDH_1, A subgroup of L-lactate dehydrogen	2e-11
PLN02602	350	PLN02602, PLN02602, lactate dehydrogenase	1e-08
PLN00135	309	PLN00135, PLN00135, malate dehydrogenase	2e-08
cd01338	322	cd01338, MDH_choloroplast_like, Chloroplast-like m	3e-08
PRK05442	326	PRK05442, PRK05442, malate dehydrogenase; Provisio	6e-07

>gnl|CDD|215058 PLN00106, PLN00106, malate dehydrogenase

 Score =  501 bits (1291), Expect = 0.0
 Identities = 189/245 (77%), Positives = 205/245 (83%)

Query: 29  ESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA 88
                    CRAKGG+PGFKVAVLGAAGGIGQPL++LMK+NPLVS LHLYD+ NTPGV A
Sbjct: 1   SMEASSLRACRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAA 60

Query: 89  DISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCE 148
           D+SH++T A VRGFLG  QL DAL G D+VIIPAGVPRKPGMTRDDLFNINAGIVKTLCE
Sbjct: 61  DVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCE 120

Query: 149 GIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLG 208
            +AK CP A+VN+ISNPVNSTVPIAAEV KK G YDPK+L GVT LDVVRANTFVAE  G
Sbjct: 121 AVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTFVAEKKG 180

Query: 209 LDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGS 268
           LDP +VDVPVVGGHAG+TILPLLSQ  P  S T  EI+ LT RIQNGGTEVVEAK GAGS
Sbjct: 181 LDPADVDVPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKAGAGS 240

Query: 269 ATLSM 273
           ATLSM
Sbjct: 241 ATLSM 245

Length = 323

>gnl|CDD|133422 cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysomal and mitochondrial malate dehydrogenases

 Score =  446 bits (1151), Expect = e-160
 Identities = 164/227 (72%), Positives = 192/227 (84%)

Query: 47  FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQ 106
            KVAVLGAAGGIGQPL++L+K+NPLVS L LYD+VNTPGV AD+SH++T A V G+LG +
Sbjct: 1   VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPE 60

Query: 107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 166
           +L+ AL G D+V+IPAGVPRKPGMTRDDLFNINAGIV+ L   +AK CPKA++ +ISNPV
Sbjct: 61  ELKKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPV 120

Query: 167 NSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVT 226
           NSTVPIAAEV KK G YDPKRL GVT LDVVRANTFVAE+LGLDP +V+VPV+GGH+GVT
Sbjct: 121 NSTVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAELLGLDPAKVNVPVIGGHSGVT 180

Query: 227 ILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
           ILPLLSQ +P  +    EI+ LT RIQ GG EVV+AK GAGSATLSM
Sbjct: 181 ILPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSM 227

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 310

>gnl|CDD|130833 TIGR01772, MDH_euk_gproteo, malate dehydrogenase, NAD-dependent

 Score =  352 bits (906), Expect = e-122
 Identities = 148/226 (65%), Positives = 180/226 (79%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
           KVAVLGAAGGIGQPL++L+K+ P VS L LYD+    GV AD+SH+ T A V+GF G++ 
Sbjct: 1   KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEG 60

Query: 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
           LE+AL G D+V+IPAGVPRKPGMTRDDLFN+NAGIVK L   +A+ CPKA++ +I+NPVN
Sbjct: 61  LENALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVN 120

Query: 168 STVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
           STVPIAAEV KK G YDP +L GVT LD+VRANTFVAE+ G DP EV+VPV+GGH+G TI
Sbjct: 121 STVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVAELKGKDPMEVNVPVIGGHSGETI 180

Query: 228 LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
           +PL+SQ       T  +++ L  RIQN GTEVV+AK GAGSATLSM
Sbjct: 181 IPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSM 226

This model represents the NAD-dependent malate dehydrogenase found in eukaryotes and certain gamma proteobacteria. The enzyme is involved in the citric acid cycle as well as the glyoxalate cycle. Several isoforms exidt in eukaryotes. In S. cereviseae, for example, there are cytoplasmic, mitochondrial and peroxisomal forms. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases [Energy metabolism, TCA cycle]. Length = 312

>gnl|CDD|235340 PRK05086, PRK05086, malate dehydrogenase; Provisional

 Score =  333 bits (857), Expect = e-115
 Identities = 144/228 (63%), Positives = 168/228 (73%), Gaps = 4/228 (1%)

Query: 48  KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQ 105
           KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
                AL G D+V+I AGV RKPGM R DLFN+NAGIVK L E +AK CPKA + +I+NP
Sbjct: 62  D-PTPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP 120

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGV 225
           VN+TV IAAEV KK G YD  +L GVT LDV+R+ TFVAE+ G  P EV+VPV+GGH+GV
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFVAELKGKQPGEVEVPVIGGHSGV 180

Query: 226 TILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
           TILPLLSQV P  S T  E+  LT RIQN GTEVVEAK G GSATLSM
Sbjct: 181 TILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSM 227

Length = 312

>gnl|CDD|240360 PTZ00325, PTZ00325, malate dehydrogenase; Provisional

 Score =  310 bits (795), Expect = e-106
 Identities = 147/227 (64%), Positives = 175/227 (77%), Gaps = 2/227 (0%)

Query: 47  FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQ 106
           FKVAVLGAAGGIGQPL++L+K NP VS L LYD+V  PGV AD+SH+DT A V G+   +
Sbjct: 9   FKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGE 68

Query: 107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 166
             E AL G D+V+I AGVPRKPGMTRDDLFN NA IV+ L   +A   PKAIV ++SNPV
Sbjct: 69  LWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV 128

Query: 167 NSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVT 226
           NSTVPIAAE  KK G YDP++L GVT LDVVRA  FVAE LG++P +V+VPVVGGH+GVT
Sbjct: 129 NSTVPIAAETLKKAGVYDPRKLFGVTTLDVVRARKFVAEALGMNPYDVNVPVVGGHSGVT 188

Query: 227 ILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
           I+PLLSQ     SL   +++ +T R+Q GG EVV+AK GAGSATLSM
Sbjct: 189 IVPLLSQT--GLSLPEEQVEQITHRVQVGGDEVVKAKEGAGSATLSM 233

Length = 321

>gnl|CDD|223117 COG0039, Mdh, Malate/lactate dehydrogenases [Energy production and conversion]

 Score =  210 bits (538), Expect = 5e-67
 Identities = 98/256 (38%), Positives = 135/256 (52%), Gaps = 25/256 (9%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ 105
           KVAV+GA G +G  LA L+ +  L S L L D+      GV  D+SH          +  
Sbjct: 2   KVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITG 60

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
               + L G DIV+I AGVPRKPGMTR DL   NA IVK + + IAK  P AIV +++NP
Sbjct: 61  DGDYEDLKGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNP 120

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLG-VTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
           V+    IA +           R++G  T+LD  R  TF+AE LG+ P++V   V+G H G
Sbjct: 121 VDILTYIAMKFSGF----PKNRVIGSGTVLDSARFRTFLAEKLGVSPKDVHAYVIGEH-G 175

Query: 225 VTILPLLSQV----KPSCSL----TPTEIDYLTDRIQNGGTEVVEAKT-----GAGSATL 271
            T++PL SQ     KP   L    T  +++ L +R++N G E++EAK      G  +A  
Sbjct: 176 DTMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAKGAGTYYGPAAALA 235

Query: 272 SMCRHMLLPS---LPM 284
            M   +L      LP+
Sbjct: 236 RMVEAILRDEKRVLPV 251

Length = 313

>gnl|CDD|200963 pfam00056, Ldh_1_N, lactate/malate dehydrogenase, NAD binding domain

 Score =  178 bits (453), Expect = 2e-56
 Identities = 63/145 (43%), Positives = 80/145 (55%), Gaps = 6/145 (4%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV--NTPGVTADISHMDTNAVVRGFLGQ 105
           KVAV+GA GG+G  LA  + +  L   L L D+      GV  D+SH  T   V G +G 
Sbjct: 2   KVAVVGAGGGVGSSLAFALALQGLADELVLVDINKDKAEGVAMDLSHGSTFLSVPGIVGG 61

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
               +AL   D+V+I AGVPRKPGMTR DL N NAGI K +   IAK  P AIV ++SNP
Sbjct: 62  DD-YEALKDADVVVITAGVPRKPGMTRLDLLNRNAGIFKDIVPAIAKSAPDAIVLVVSNP 120

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLG 190
           V+    IA +V    G    + +  
Sbjct: 121 VDILTYIAWKVS---GLPPERVIGS 142

L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold. Length = 142

>gnl|CDD|180477 PRK06223, PRK06223, malate dehydrogenase; Reviewed

 Score =  145 bits (369), Expect = 8e-42
 Identities = 90/244 (36%), Positives = 135/244 (55%), Gaps = 29/244 (11%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRGF--- 102
           K++++GA G +G  LA L+ +  L  V+ L+D+V   P G   DI+     A V GF   
Sbjct: 4   KISIIGA-GNVGATLAHLLALKELGDVV-LFDIVEGVPQGKALDIAEA---APVEGFDTK 58

Query: 103 -LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
             G    ED + G D+V+I AGVPRKPGM+RDDL  INA I+K + EGI K  P AIV +
Sbjct: 59  ITGTNDYED-IAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIV 117

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           ++NPV++   +A     K   +   R++G+  +LD  R  TF+AE L +  ++V   V+G
Sbjct: 118 VTNPVDAMTYVA----LKESGFPKNRVIGMAGVLDSARFRTFIAEELNVSVKDVTAFVLG 173

Query: 221 GHAGVTILPLLSQV----KPSCSLTPTE-IDYLTDRIQNGGTEVVE-AKTGA-----GSA 269
           GH G +++PL+        P   L   E +D + +R + GG E+V   KTG+      ++
Sbjct: 174 GH-GDSMVPLVRYSTVGGIPLEDLLSKEKLDEIVERTRKGGAEIVGLLKTGSAYYAPAAS 232

Query: 270 TLSM 273
              M
Sbjct: 233 IAEM 236

Length = 307

>gnl|CDD|133424 cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate dehydrogenase proteins

 Score =  143 bits (363), Expect = 4e-41
 Identities = 82/233 (35%), Positives = 125/233 (53%), Gaps = 24/233 (10%)

Query: 49  VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHM----DTNAVVRGF 102
           ++++GA G +G  LA L+ +  L  V+ L D+V   P G   DIS       ++  V G 
Sbjct: 1   ISIIGA-GNVGATLAQLLALKELGDVV-LLDIVEGLPQGKALDISQAAPILGSDTKVTGT 58

Query: 103 LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 162
              + +  +    D+V+I AG+PRKPGM+RDDL   NA IVK + E I K  P AIV ++
Sbjct: 59  NDYEDIAGS----DVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVV 114

Query: 163 SNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGG 221
           +NP++        V  K   +   R++G+  +LD  R   F+AE LG+  ++V   V+GG
Sbjct: 115 TNPLDVMT----YVAYKASGFPRNRVIGMAGVLDSARFRYFIAEELGVSVKDVQAMVLGG 170

Query: 222 HAGVTILPLLSQ-----VKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSA 269
           H G T++PL        +  +  +T  EID + +R +NGG E+V      GSA
Sbjct: 171 H-GDTMVPLPRYSTVGGIPLTELITKEEIDEIVERTRNGGAEIVNLL-KTGSA 221

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300

>gnl|CDD|133419 cd00650, LDH_MDH_like, NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

 Score =  138 bits (351), Expect = 1e-39
 Identities = 66/207 (31%), Positives = 98/207 (47%), Gaps = 9/207 (4%)

Query: 49  VAVLGAAGGIGQPLA--MLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG 104
           +AV+GA G +G  LA  +      L   L LYD+      GV  D+              
Sbjct: 1   IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSI 60

Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
                +A    D+VII AGV RKPGM R DL   N  IVK + + I K  P A + ++SN
Sbjct: 61  TDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSN 120

Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
           PV+    I   +  +      ++++G+  LD +R    +AE LG+DP +V V ++G H G
Sbjct: 121 PVD----IITYLVWRYSGLPKEKVIGLGTLDPIRFRRILAEKLGVDPDDVKVYILGEHGG 176

Query: 225 VTILPLLSQVKPSCSLTPTEIDYLTDR 251
            + +P  S V+ + S+       L D 
Sbjct: 177 -SQVPDWSTVRIATSIADLIRSLLNDE 202

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 263

>gnl|CDD|173409 PTZ00117, PTZ00117, malate dehydrogenase; Provisional

 Score =  116 bits (293), Expect = 1e-30
 Identities = 78/239 (32%), Positives = 122/239 (51%), Gaps = 23/239 (9%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISH-MDTNAVVRGFLG 104
           K++++GA G IG  +A+L+    L  V+ LYDV+   P G   D+ H           LG
Sbjct: 7   KISMIGA-GQIGSTVALLILQKNLGDVV-LYDVIKGVPQGKALDLKHFSTLVGSNINILG 64

Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
               ED +   D+V+I AGV RK  MTR+DL  IN  I+K++ E + K CP A V  ++N
Sbjct: 65  TNNYED-IKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN 123

Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHA 223
           P++       +VF++       ++ G+  +LD  R    +AE LG+ P +V   V+GGH 
Sbjct: 124 PLD----CMVKVFQEKSGIPSNKICGMAGVLDSSRFRCNLAEKLGVSPGDVSAVVIGGH- 178

Query: 224 GVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLS 272
           G  ++PL          LS      ++T  EI+ +  + +N G E+V+     GSA  +
Sbjct: 179 GDLMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKL-LKKGSAFFA 236

Length = 319

>gnl|CDD|133418 cd00300, LDH_like, L-lactate dehydrogenase-like enzymes

 Score =  114 bits (287), Expect = 6e-30
 Identities = 74/245 (30%), Positives = 117/245 (47%), Gaps = 21/245 (8%)

Query: 49  VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQ 106
           + ++GA G +G  +A  +    L S L L DV      G   D+SH          +   
Sbjct: 1   ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGG 59

Query: 107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 166
              DA    DIV+I AG PRKPG TR DL N NA I++++   + K  P AI+ ++SNPV
Sbjct: 60  DYADA-ADADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPV 118

Query: 167 NSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGV 225
           +    I   V +K+      R++G  T+LD  R  + +AE L +DP+ V   V+G H G 
Sbjct: 119 D----ILTYVAQKLSGLPKNRVIGSGTLLDSARFRSLLAEKLDVDPQSVHAYVLGEH-GD 173

Query: 226 TILPLLSQV----KPSCSLTPT---EIDYLTDRIQNGGTEVVEAK----TGAGSATLSMC 274
           + +   S       P   L P    +++ + + ++  G E++  K     G  +A   + 
Sbjct: 174 SQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIRLKGATNYGIATAIADIV 233

Query: 275 RHMLL 279
           + +LL
Sbjct: 234 KSILL 238

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300

>gnl|CDD|202437 pfam02866, Ldh_1_C, lactate/malate dehydrogenase, alpha/beta C-terminal domain

 Score =  107 bits (270), Expect = 9e-29
 Identities = 46/92 (50%), Positives = 59/92 (64%), Gaps = 12/92 (13%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG----------VTILPLLSQVKPSCSLT 241
           T LD  RA TF+AE  G+DPR V+V V+G H+G          VTI+PL+SQVK +   T
Sbjct: 1   TTLDTARARTFLAEKFGVDPRSVNVYVIGEHSGTQFPDWSHAKVTIIPLISQVKENLKDT 60

Query: 242 PTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
             E++ L +R+QN G EV+EAK  AGS T SM
Sbjct: 61  DWELEELIERVQNAGYEVIEAK--AGSTTYSM 90

L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. Length = 173

>gnl|CDD|173376 PTZ00082, PTZ00082, L-lactate dehydrogenase; Provisional

 Score =  106 bits (266), Expect = 8e-27
 Identities = 83/241 (34%), Positives = 133/241 (55%), Gaps = 28/241 (11%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVR-GFLG 104
           K++++G+ G IG  +A L+ +  L  V+ L+D+V N P G   DISH +  A      +G
Sbjct: 8   KISLIGS-GNIGGVMAYLIVLKNLGDVV-LFDIVKNIPQGKALDISHSNVIAGSNSKVIG 65

Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMT-----RDDLFNINAGIVKTLCEGIAKCCPKAIV 159
               ED + G D+VI+ AG+ ++PG +     RDDL  +NA I+  + EGI K CP A V
Sbjct: 66  TNNYED-IAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFV 124

Query: 160 NLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPV 218
            +I+NP++  V    ++ ++       ++ G+  +LD  R  T++AE LG++PR+V   V
Sbjct: 125 IVITNPLDVMV----KLLQEHSGLPKNKVCGMAGVLDSSRLRTYIAEKLGVNPRDVHASV 180

Query: 219 VGGHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGS 268
           +G H G  ++PL          LS+      +T  EID + +R +N G E+V+   G GS
Sbjct: 181 IGAH-GDKMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIVDL-LGTGS 238

Query: 269 A 269
           A
Sbjct: 239 A 239

Length = 321

>gnl|CDD|133430 cd05294, LDH-like_MDH_nadp, A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

 Score =  104 bits (262), Expect = 3e-26
 Identities = 67/243 (27%), Positives = 111/243 (45%), Gaps = 43/243 (17%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHL-----------------YDVVNTPGVTADI 90
           KV+++GA+G +G   A+L+    +V  ++L                 YD +   G+ A+I
Sbjct: 2   KVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEI 61

Query: 91  SHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGI 150
                 + V              G DIVII AGVPRK GM+R DL   NA IVK   + I
Sbjct: 62  KISSDLSDV-------------AGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQI 108

Query: 151 AKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGL 209
           A+  P   + +++NPV+     A     K   +D  R+ G+ T LD +R    +A+   +
Sbjct: 109 AEFAPDTKILVVTNPVDVMTYKAL----KESGFDKNRVFGLGTHLDSLRFKVAIAKHFNV 164

Query: 210 DPREVDVPVVGGHAGVTILPLLSQVK----PSCSLTPTE---IDYLTDRIQNGGTEVVEA 262
              EV   ++G H G +++PL+S       P       +   ++ + + ++N G  ++  
Sbjct: 165 HISEVHTRIIGEH-GDSMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISL 223

Query: 263 KTG 265
           K G
Sbjct: 224 KGG 226

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)- binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 309

>gnl|CDD|233562 TIGR01763, MalateDH_bact, malate dehydrogenase, NAD-dependent

 Score = 98.0 bits (244), Expect = 8e-24
 Identities = 74/234 (31%), Positives = 121/234 (51%), Gaps = 24/234 (10%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGF--- 102
           K++V+GA G +G   A  +    L  ++ L DVV     G   D   M   + V GF   
Sbjct: 3   KISVIGA-GFVGATTAFRLAEKELADLV-LLDVVEGIPQGKALD---MYEASPVGGFDTK 57

Query: 103 -LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
             G     D     DIV+I AG+PRKPGM+R+DL ++NAGIV+ +   I +  P  I+ +
Sbjct: 58  VTGTNNYADT-ANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVV 116

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVG 220
           +SNP+++   +A +       +  +R++G   +LD  R  TF+A  LG+  ++V   V+G
Sbjct: 117 VSNPLDAMTYVAWQ----KSGFPKERVIGQAGVLDSARFRTFIAMELGVSVQDVTACVLG 172

Query: 221 GHAGVTILPL-----LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSA 269
           GH G  ++PL     ++ +  +  ++   I  + +R + GG E+V      GSA
Sbjct: 173 GH-GDAMVPLVRYSTVAGIPVADLISAERIAEIVERTRKGGGEIVNL-LKQGSA 224

This enzyme converts malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterized , and have been used to set the cutoffs for this model. Sequences showing [aflimv][ap]R[rk]pgM[st] and [ltv][ilm]gGhgd were kept above trusted, while those in which the capitalized residues in the patterns were found to be Q, E and E were kept below the noise cutoff. Some sequences in the grey zone have been annotated as malate dehydrogenases, but none have been characterized. Phylogenetically, a clade of sequences from eukaryotes such as Toxoplasma and Plasmodium which include a characterized lactate dehydrogenase and show abiguous critical residue patterns appears to be more closely related to these bacterial sequences than other eukaryotic sequences. These are relatively long branch and have been excluded from the model. All other sequences falling below trusted appear to be phylogenetically outside of the clade including the trusted hits. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable [Energy metabolism, TCA cycle]. Length = 305

>gnl|CDD|133427 cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

 Score = 89.4 bits (223), Expect = 9e-21
 Identities = 72/255 (28%), Positives = 112/255 (43%), Gaps = 38/255 (14%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA---DISHM--DTNAVVRGF 102
           KV ++GA G +G   A  +    +   L L D+ N         D+        + V+  
Sbjct: 2   KVVIIGA-GHVGSSFAYSLVNQGIADELVLIDI-NEEKAEGEALDLEDALAFLPSPVKIK 59

Query: 103 LGQ-QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
            G     +DA    DIV+I AG P+KPG TR DL   NA I+K++   I       I  +
Sbjct: 60  AGDYSDCKDA----DIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLV 115

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
            SNPV+    +   V +K+      R++G  T LD  R    +AE L +DPR V   V+G
Sbjct: 116 ASNPVD----VITYVVQKLSGLPKNRVIGTGTSLDTARLRRALAEKLNVDPRSVHAYVLG 171

Query: 221 GH-------------AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAK--T- 264
            H              G  +L LL + K    L+  ++D + + ++  G E++  K  T 
Sbjct: 172 EHGDSQFVAWSTVTVGGKPLLDLLKEGK----LSELDLDEIEEDVRKAGYEIINGKGATY 227

Query: 265 -GAGSATLSMCRHML 278
            G  +A   + + +L
Sbjct: 228 YGIATALARIVKAIL 242

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 306

>gnl|CDD|233566 TIGR01771, L-LDH-NAD, L-lactate dehydrogenase

 Score = 84.9 bits (211), Expect = 4e-19
 Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 19/182 (10%)

Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 171
               D+V+I AG P+KPG TR +L   N  I+K++   + K     I  + +NPV+    
Sbjct: 62  CKDADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVD---- 117

Query: 172 IAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH-------- 222
           I   V  K+  +   R++G  T+LD  R    +AE LG+DP+ V   ++G H        
Sbjct: 118 ILTYVAWKLSGFPKNRVIGSGTVLDTARLRYLLAEKLGVDPQSVHAYIIGEHGDSEVPVW 177

Query: 223 --AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAK----TGAGSATLSMCRH 276
             A +  +PLL  +K   + T  +++ +   +++   E++  K     G G A   +   
Sbjct: 178 SSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIINRKGATYYGIGMAVARIVEA 237

Query: 277 ML 278
           +L
Sbjct: 238 IL 239

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases [Energy metabolism, Anaerobic, Energy metabolism, Glycolysis/gluconeogenesis]. Length = 299

>gnl|CDD|130820 TIGR01759, MalateDH-SF1, malate dehydrogenase

 Score = 80.8 bits (200), Expect = 2e-17
 Identities = 70/254 (27%), Positives = 111/254 (43%), Gaps = 33/254 (12%)

Query: 48  KVAVLGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNT----PGVTADISHMDTN 96
           +VAV GAAG IG  L        +  K  P+V  LHL D+        GV  ++   D  
Sbjct: 5   RVAVTGAAGQIGYSLLFRIASGELFGKDQPVV--LHLLDIPPAMKALEGVAMEL--EDCA 60

Query: 97  -AVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP 155
             ++ G +     E+A   +D  ++    PRKPGM R DL + N  I K   + + K   
Sbjct: 61  FPLLAGVVATTDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAK 120

Query: 156 KAI-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREV 214
           K + V ++ NP N+   IA++    +    PK    +T LD  RA   +A   G+   +V
Sbjct: 121 KDVKVLVVGNPANTNALIASKNAPDI---PPKNFSAMTRLDHNRAKYQLAAKAGVPVSDV 177

Query: 215 -DVPVVGGHAGVTILPLLSQ----VKPSCSLTPTEIDYL----TDRIQNGGTEVVEA--K 263
            +V + G H+  T +P  +      +P   +   +  +L       +Q  G  V+EA   
Sbjct: 178 KNVIIWGNHSN-TQVPDFTHATVDGRPVKEVIKDD-KWLEGEFIPTVQQRGAAVIEARGA 235

Query: 264 TGAGSATLSMCRHM 277
           + A SA  +   H+
Sbjct: 236 SSAASAANAAIDHV 249

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. Length = 323

>gnl|CDD|133420 cd00704, MDH, Malate dehydrogenase

 Score = 80.4 bits (199), Expect = 2e-17
 Identities = 67/260 (25%), Positives = 104/260 (40%), Gaps = 42/260 (16%)

Query: 48  KVAVLGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAV-- 98
            V + GAAG IG  L        +     P++  LHL D+         +  ++   +  
Sbjct: 2   HVLITGAAGQIGYNLLFLIASGELFGDDQPVI--LHLLDI------PPAMKALEGVVMEL 53

Query: 99  -------VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIA 151
                  ++G +     E+A   +D+ I+    PRKPGM R DL   NA I K   E + 
Sbjct: 54  QDCAFPLLKGVVITTDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALN 113

Query: 152 KCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLD 210
           K   P   V ++ NP N+   IA    K      PK    +T LD  RA   VA  LG+ 
Sbjct: 114 KVAKPTVKVLVVGNPANTNALIAL---KNAPNLPPKNFTALTRLDHNRAKAQVARKLGVR 170

Query: 211 PREV-DVPVVGGHAGVTILPLLSQVK----PSCSLTPTEIDY------LTDRIQNGGTEV 259
             +V +V + G H+  T +P LS                +D           +Q  G  +
Sbjct: 171 VSDVKNVIIWGNHSN-TQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAI 229

Query: 260 VEAK--TGAGSATLSMCRHM 277
           ++ +  + A SA  ++  H+
Sbjct: 230 IKKRGASSAASAAKAIADHV 249

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 323

>gnl|CDD|133428 cd05292, LDH_2, A subgroup of L-lactate dehydrogenases

 Score = 78.7 bits (195), Expect = 6e-17
 Identities = 60/181 (33%), Positives = 89/181 (49%), Gaps = 16/181 (8%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA---DISH-MDTNAVVRGFL 103
           KVA++GA G +G   A  + +  L S + L D+ N         D++H       VR + 
Sbjct: 2   KVAIVGA-GFVGSTTAYALLLRGLASEIVLVDI-NKAKAEGEAMDLAHGTPFVKPVRIYA 59

Query: 104 GQ-QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 162
           G     + A    D+V+I AG  +KPG TR DL   N  I K +   I K  P AI+ ++
Sbjct: 60  GDYADCKGA----DVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVV 115

Query: 163 SNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGG 221
           +NPV+    +   V  K+    P R++G  T+LD  R    + E LG+DPR V   ++G 
Sbjct: 116 TNPVD----VLTYVAYKLSGLPPNRVIGSGTVLDTARFRYLLGEHLGVDPRSVHAYIIGE 171

Query: 222 H 222
           H
Sbjct: 172 H 172

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 308

>gnl|CDD|133426 cd05290, LDH_3, A subgroup of L-lactate dehydrogenases

 Score = 77.4 bits (191), Expect = 2e-16
 Identities = 54/191 (28%), Positives = 82/191 (42%), Gaps = 30/191 (15%)

Query: 110 DALTGMDIVIIPAGVPRKPGMT--RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
           D     DI++I AG    PG T  R DL   NA I++ +   I K   +A++ LI+NP++
Sbjct: 64  DDCADADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLD 123

Query: 168 STVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVT 226
             V IAA  F     Y   +++G  TMLD  R    VA+  G+DP+ V   V+G H G  
Sbjct: 124 IAVYIAATEFD----YPANKVIGTGTMLDTARLRRIVADKYGVDPKNVTGYVLGEH-GSH 178

Query: 227 ILPLLSQVKPSCSLTPTEIDYLTD--------------RIQNGGTEVVEAK----TGAGS 268
             P+ S V    ++    +D L                 +     +V   K     G   
Sbjct: 179 AFPVWSLV----NIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFNRKGWTNAGIAK 234

Query: 269 ATLSMCRHMLL 279
           +   + + +LL
Sbjct: 235 SASRLIKAILL 245

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 307

>gnl|CDD|178836 PRK00066, ldh, L-lactate dehydrogenase; Reviewed

 Score = 70.3 bits (173), Expect = 6e-14
 Identities = 57/195 (29%), Positives = 86/195 (44%), Gaps = 21/195 (10%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV--NTPGVTADISHMDTNAVVRGFLGQ 105
           KV ++G  G +G   A  +    +   L + D+      G   D+SH    AV   F   
Sbjct: 8   KVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSH----AVP--FTSP 60

Query: 106 QQL-----EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN 160
            ++      D     D+V+I AG P+KPG TR DL   N  I K++   +       I  
Sbjct: 61  TKIYAGDYSDC-KDADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFL 119

Query: 161 LISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVV 219
           + SNPV+    I      K+  +  +R++G  T LD  R    ++E L +DPR V   ++
Sbjct: 120 VASNPVD----ILTYATWKLSGFPKERVIGSGTSLDSARFRYMLSEKLDVDPRSVHAYII 175

Query: 220 GGHAGVTILPLLSQV 234
           G H G T  P+ S  
Sbjct: 176 GEH-GDTEFPVWSHA 189

Length = 315

>gnl|CDD|130819 TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-dependent

 Score = 66.8 bits (163), Expect = 1e-12
 Identities = 69/256 (26%), Positives = 104/256 (40%), Gaps = 33/256 (12%)

Query: 48  KVAVLGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTPGVTADISH--MDTN-A 97
           +V V GAAG IG  L        ML K  P++  LHL D+     V   +    MD    
Sbjct: 1   RVVVTGAAGQIGYALLPMIARGRMLGKDQPII--LHLLDIPPAMKVLEGVVMELMDCAFP 58

Query: 98  VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA 157
           ++ G +       A T +D+ I+    PRK GM R DL + N  I K     + K   K 
Sbjct: 59  LLDGVVPTHDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKD 118

Query: 158 I-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREV-D 215
             V ++ NP N+   + +     +    PK    +T LD  RA   VAE  G+   +V +
Sbjct: 119 CKVLVVGNPANTNALVLSNYAPSI---PPKNFSALTRLDHNRALAQVAERAGVPVSDVKN 175

Query: 216 VPVVGGHAGVTILPLLSQ--VKPSCSLTPTEIDYLTDR----------IQNGGTEVVEAK 263
           V + G H+  T  P ++   V       P   + + D           +Q  G  ++ A+
Sbjct: 176 VIIWGNHSS-TQYPDVNHATVTKGGKQKPVR-EAIKDDAYLDGEFITTVQQRGAAIIRAR 233

Query: 264 --TGAGSATLSMCRHM 277
             + A SA  +    M
Sbjct: 234 KLSSALSAAKAAVDQM 249

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography. Length = 324

>gnl|CDD|130817 TIGR01756, LDH_protist, lactate dehydrogenase

 Score = 65.3 bits (159), Expect = 3e-12
 Identities = 47/192 (24%), Positives = 78/192 (40%), Gaps = 20/192 (10%)

Query: 101 GFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGI---AKCCPKA 157
           G +   +LE+A   +D   + A VP KPG  R DL   N  I K   E +   AK   K 
Sbjct: 47  GTIVTTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGEALSEYAKPTVKV 106

Query: 158 IVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVP 217
           +V  I NPVN+   +A     K+     +    + MLD  RA + +A  L +    +   
Sbjct: 107 LV--IGNPVNTNCLVAMLHAPKL---SAENFSSLCMLDHNRAVSRIASKLKVPVDHIYHV 161

Query: 218 VVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGT----------EVVE--AKTG 265
           VV G+   +++  L+  + + +    ++     R                +++E    T 
Sbjct: 162 VVWGNHAESMVADLTHAEFTKNGKHQKVFDELCRDYPEPDFFEVIAQRAWKILEMRGFTS 221

Query: 266 AGSATLSMCRHM 277
           A S   +  +HM
Sbjct: 222 AASPVKASLQHM 233

This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule. Length = 313

>gnl|CDD|133421 cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic and cytosolic Malate dehydrogenases

 Score = 65.3 bits (160), Expect = 4e-12
 Identities = 66/260 (25%), Positives = 109/260 (41%), Gaps = 41/260 (15%)

Query: 48  KVAVLGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTP------GVTADISHMD 94
           +V V GAAG I   L        +     P++  LHL D+   P      GV  ++   D
Sbjct: 4   RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVI--LHLLDI--PPALKALEGVVMEL--QD 57

Query: 95  TN-AVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC 153
               +++  +     E+A   +D+ I+   +PRK GM R DL   N  I K   E + K 
Sbjct: 58  CAFPLLKSVVATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKY 117

Query: 154 CPKAI-VNLISNPVNSTVPIAAEVFKKVGTYDPKR-LLGVTMLDVVRANTFVAEVLGLDP 211
             K + V ++ NP N+   I  +    +    PK     +T LD  RA + +A  LG+  
Sbjct: 118 AKKNVKVLVVGNPANTNALILLKYAPSI----PKENFTALTRLDHNRAKSQIALKLGVPV 173

Query: 212 REV-DVPVVGGHAGVTILPLLSQVKPSCSLTPTEI-------DYLTD----RIQNGGTEV 259
            +V +V + G H+  T  P ++      +              +L       +Q  G  V
Sbjct: 174 SDVKNVIIWGNHSS-TQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAAV 232

Query: 260 VEAK--TGAGSATLSMCRHM 277
           ++A+  + A SA  ++C H+
Sbjct: 233 IKARKLSSAMSAAKAICDHV 252

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 325

>gnl|CDD|133429 cd05293, LDH_1, A subgroup of L-lactate dehydrogenases

 Score = 63.4 bits (155), Expect = 2e-11
 Identities = 59/203 (29%), Positives = 88/203 (43%), Gaps = 22/203 (10%)

Query: 44  SPGFKVAVLGA-AGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVR 100
            P  KV V+G    G+   +++L K   L   L L DVV     G   D+ H        
Sbjct: 1   KPRNKVTVVGVGQVGMACAISILAK--GLADELVLVDVVEDKLKGEAMDLQH------GS 52

Query: 101 GFLGQQQLE-----DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP 155
            FL   ++E            +VI+ AG  +  G +R DL   N  I K +   + K  P
Sbjct: 53  AFLKNPKIEADKDYSVTANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSP 112

Query: 156 KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREV 214
            AI+ ++SNPV+    I   V  K+      R++G    LD  R    +AE LG+ P  V
Sbjct: 113 NAILLVVSNPVD----IMTYVAWKLSGLPKHRVIGSGCNLDSARFRYLIAERLGVAPSSV 168

Query: 215 DVPVVGGHAGVTILPLLSQVKPS 237
              ++G H G + +P+ S V  +
Sbjct: 169 HGWIIGEH-GDSSVPVWSGVNVA 190

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 312

>gnl|CDD|178212 PLN02602, PLN02602, lactate dehydrogenase

 Score = 54.8 bits (132), Expect = 1e-08
 Identities = 62/228 (27%), Positives = 106/228 (46%), Gaps = 25/228 (10%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV--NTPGVTADISHMDTNAVVRGFLGQ 105
           KV+V+G  G +G  +A  +    L   L L DV      G   D+ H         FL +
Sbjct: 39  KVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQH------AAAFLPR 91

Query: 106 QQL----EDALT-GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN 160
            ++    + A+T G D+ I+ AG  + PG +R +L   N  + + +   +AK  P  I+ 
Sbjct: 92  TKILASTDYAVTAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILL 151

Query: 161 LISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVV 219
           ++SNPV+    +   V  K+  +   R++G  T LD  R    +A+ L ++ ++V   +V
Sbjct: 152 IVSNPVD----VLTYVAWKLSGFPANRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAYIV 207

Query: 220 GGHAGVTILPLLSQVK----PSCS-LTPTEIDYLTDRIQNGGTEVVEA 262
           G H G + + L S V     P  S L   +I Y  + ++     VV++
Sbjct: 208 GEH-GDSSVALWSSVSVGGVPVLSFLEKQQIAYEKETLEEIHRAVVDS 254

Length = 350

>gnl|CDD|177744 PLN00135, PLN00135, malate dehydrogenase

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 49/194 (25%), Positives = 89/194 (45%), Gaps = 19/194 (9%)

Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKA 157
           ++G +    + +A  G++I ++  G PRK GM R D+ + N  I K+    + K   P  
Sbjct: 43  LKGVVATTDVVEACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAPDC 102

Query: 158 IVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVP 217
            V +++NP N+   I  E    +     K +  +T LD  RA   ++E LG+   +V   
Sbjct: 103 KVLVVANPANTNALILKEFAPSI---PEKNITCLTRLDHNRALGQISERLGVPVSDVKNV 159

Query: 218 VVGGHAGVTILPLLSQV--------KPSCSLTPTEI----DYLTDRIQNGGTEVVEAK-- 263
           ++ G+   T  P ++          KP   L   +     +++T  +Q  G  +++A+  
Sbjct: 160 IIWGNHSSTQYPDVNHATVKTPSGEKPVRELVADDAWLNGEFITT-VQQRGAAIIKARKL 218

Query: 264 TGAGSATLSMCRHM 277
           + A SA  S C H+
Sbjct: 219 SSALSAASSACDHI 232

Length = 309

>gnl|CDD|133423 cd01338, MDH_choloroplast_like, Chloroplast-like malate dehydrogenases

 Score = 53.4 bits (129), Expect = 3e-08
 Identities = 57/243 (23%), Positives = 91/243 (37%), Gaps = 30/243 (12%)

Query: 48  KVAVLGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTN 96
           +VAV GAAG IG  L        M     P++  L L ++        GV  ++   +  
Sbjct: 4   RVAVTGAAGQIGYSLLFRIASGEMFGPDQPVI--LQLLELPQALKALEGVAMEL---EDC 58

Query: 97  A--VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAK-C 153
           A  ++   +       A    D  ++    PR PGM R DL   N  I     + +    
Sbjct: 59  AFPLLAEIVITDDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVA 118

Query: 154 CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRE 213
                V ++ NP N+   IA +    +    P     +T LD  RA + +A+  G+   +
Sbjct: 119 SRDVKVLVVGNPCNTNALIAMKNAPDI---PPDNFTAMTRLDHNRAKSQLAKKAGVPVTD 175

Query: 214 VDVPVVGGHAGVTILPLLSQVKPSCSLTPTEI-------DYLTDRIQNGGTEVVEAKTGA 266
           V   V+ G+   T  P  +            I       D     +Q  G  +++A+ GA
Sbjct: 176 VKNMVIWGNHSPTQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKAR-GA 234

Query: 267 GSA 269
            SA
Sbjct: 235 SSA 237

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 322

>gnl|CDD|235468 PRK05442, PRK05442, malate dehydrogenase; Provisional

 Score = 49.4 bits (119), Expect = 6e-07
 Identities = 63/250 (25%), Positives = 100/250 (40%), Gaps = 44/250 (17%)

Query: 48  KVAVLGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVV- 99
           +VAV GAAG IG  L        ML K  P++  L L ++   P + A         VV 
Sbjct: 6   RVAVTGAAGQIGYSLLFRIASGDMLGKDQPVI--LQLLEI--PPALKA------LEGVVM 55

Query: 100 ----------RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEG 149
                      G +       A    D+ ++    PR PGM R DL   N  I     + 
Sbjct: 56  ELDDCAFPLLAGVVITDDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKA 115

Query: 150 IAKCCPKAI-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLG 208
           + +   + + V ++ NP N+   IA +    +     +    +T LD  RA + +A   G
Sbjct: 116 LNEVAARDVKVLVVGNPANTNALIAMKNAPDL---PAENFTAMTRLDHNRALSQLAAKAG 172

Query: 209 LDPREV-DVPVVGGHAGVTILPLLSQV----KPSCSLTPTEIDYLTD----RIQNGGTEV 259
           +   ++  + V G H+  T  P         KP+  +   +  +L D     +Q  G  +
Sbjct: 173 VPVADIKKMTVWGNHSA-TQYPDFRHATIDGKPAAEVINDQ-AWLEDTFIPTVQKRGAAI 230

Query: 260 VEAKTGAGSA 269
           +EA+ GA SA
Sbjct: 231 IEAR-GASSA 239

Length = 326

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	289
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	100.0
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	100.0
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	100.0
PLN00106	323	malate dehydrogenase	100.0
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	100.0
KOG1495	332	consensus Lactate dehydrogenase [Energy production	100.0
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	100.0
PTZ00325	321	malate dehydrogenase; Provisional	100.0
PLN02602	350	lactate dehydrogenase	100.0
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	100.0
PRK05086	312	malate dehydrogenase; Provisional	100.0
PRK05442	326	malate dehydrogenase; Provisional	100.0
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	100.0
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	100.0
KOG1494	345	consensus NAD-dependent malate dehydrogenase [Ener	100.0
PLN00112	444	malate dehydrogenase (NADP); Provisional	100.0
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	100.0
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	100.0
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	100.0
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	100.0
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	100.0
PTZ00082	321	L-lactate dehydrogenase; Provisional	100.0
PTZ00117	319	malate dehydrogenase; Provisional	100.0
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	100.0
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	100.0
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	100.0
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	100.0
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	100.0
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	100.0
PRK06223	307	malate dehydrogenase; Reviewed	100.0
cd05295	452	MDH_like Malate dehydrogenase-like. These MDH-like	100.0
PLN00135	309	malate dehydrogenase	100.0
TIGR01756	313	LDH_protist lactate dehydrogenase. This model repr	100.0
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	100.0
KOG1496	332	consensus Malate dehydrogenase [Energy production	100.0
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	100.0
PRK15076	431	alpha-galactosidase; Provisional	99.92
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	99.92
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	99.91
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	99.87
PF02866	174	Ldh_1_C: lactate/malate dehydrogenase, alpha/beta	99.85
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	99.84
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	99.8
COG1486	442	CelF Alpha-galactosidases/6-phospho-beta-glucosida	99.8
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	99.05
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	98.98
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	98.97
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	98.94
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.79
PRK11730	715	fadB multifunctional fatty acid oxidation complex	98.75
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	98.74
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	98.72
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.72
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.71
PLN02353	473	probable UDP-glucose 6-dehydrogenase	98.7
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	98.7
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	98.65
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	98.62
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.6
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	98.58
PLN02166	436	dTDP-glucose 4,6-dehydratase	98.57
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	98.55
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	98.54
PLN00198	338	anthocyanidin reductase; Provisional	98.53
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	98.53
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	98.52
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	98.45
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	98.45
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	98.44
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.44
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	98.43
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.42
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	98.42
PLN02695	370	GDP-D-mannose-3',5'-epimerase	98.42
PLN02427	386	UDP-apiose/xylose synthase	98.42
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	98.41
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	98.39
PLN02650	351	dihydroflavonol-4-reductase	98.37
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	98.37
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.36
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	98.35
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	98.35
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	98.35
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	98.34
PLN02206	442	UDP-glucuronate decarboxylase	98.31
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	98.3
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	98.3
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	98.27
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	98.27
CHL00194	317	ycf39 Ycf39; Provisional	98.24
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	98.24
PLN02572	442	UDP-sulfoquinovose synthase	98.21
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	98.21
PLN02214	342	cinnamoyl-CoA reductase	98.2
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	98.19
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	98.19
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	98.16
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	98.15
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	98.13
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	98.13
PLN02260	668	probable rhamnose biosynthetic enzyme	98.12
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	98.1
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	98.09
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	98.08
PLN02653	340	GDP-mannose 4,6-dehydratase	98.07
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	98.06
PRK10675	338	UDP-galactose-4-epimerase; Provisional	98.05
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	98.04
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	98.04
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	98.03
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	98.03
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	98.02
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	98.01
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	98.01
PRK06194	287	hypothetical protein; Provisional	98.01
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	98.0
PLN02896	353	cinnamyl-alcohol dehydrogenase	98.0
PLN02778	298	3,5-epimerase/4-reductase	98.0
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.99
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	97.99
PLN03209	576	translocon at the inner envelope of chloroplast su	97.98
PLN02583	297	cinnamoyl-CoA reductase	97.95
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	97.94
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	97.92
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.9
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.89
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.89
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	97.86
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	97.86
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.86
PLN02686	367	cinnamoyl-CoA reductase	97.86
PRK07201	657	short chain dehydrogenase; Provisional	97.85
PRK07985	294	oxidoreductase; Provisional	97.85
PLN02240	352	UDP-glucose 4-epimerase	97.8
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	97.79
PRK07417	279	arogenate dehydrogenase; Reviewed	97.79
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	97.78
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.77
PRK08643	256	acetoin reductase; Validated	97.76
KOG1429	350	consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro	97.75
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	97.7
PLN02253	280	xanthoxin dehydrogenase	97.69
PLN02725	306	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas	97.68
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	97.68
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	97.68
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	97.67
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	97.65
PRK06482	276	short chain dehydrogenase; Provisional	97.65
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	97.64
PLN02260	668	probable rhamnose biosynthetic enzyme	97.64
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	97.64
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	97.63
PRK08267	260	short chain dehydrogenase; Provisional	97.62
PRK06180	277	short chain dehydrogenase; Provisional	97.62
PRK05865	854	hypothetical protein; Provisional	97.62
PRK12320	699	hypothetical protein; Provisional	97.62
PLN02688	266	pyrroline-5-carboxylate reductase	97.61
PRK12829	264	short chain dehydrogenase; Provisional	97.61
PRK07680	273	late competence protein ComER; Validated	97.61
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	97.61
PRK05717	255	oxidoreductase; Validated	97.6
KOG1430	361	consensus C-3 sterol dehydrogenase/3-beta-hydroxys	97.59
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	97.58
PRK07523	255	gluconate 5-dehydrogenase; Provisional	97.57
PRK09135	249	pteridine reductase; Provisional	97.56
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	97.56
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.55
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.55
COG2910	211	Putative NADH-flavin reductase [General function p	97.55
PRK06182	273	short chain dehydrogenase; Validated	97.54
PRK08655	437	prephenate dehydrogenase; Provisional	97.54
PRK07326	237	short chain dehydrogenase; Provisional	97.53
PRK10538	248	malonic semialdehyde reductase; Provisional	97.53
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	97.52
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	97.52
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	97.51
PRK07102	243	short chain dehydrogenase; Provisional	97.51
PRK06924	251	short chain dehydrogenase; Provisional	97.5
PRK07069	251	short chain dehydrogenase; Validated	97.5
PRK06545	359	prephenate dehydrogenase; Validated	97.5
PRK07806	248	short chain dehydrogenase; Provisional	97.5
PRK07067	257	sorbitol dehydrogenase; Provisional	97.48
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	97.48
PRK06172	253	short chain dehydrogenase; Provisional	97.47
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	97.47
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	97.47
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	97.46
KOG2666	481	consensus UDP-glucose/GDP-mannose dehydrogenase [C	97.46
PRK08265	261	short chain dehydrogenase; Provisional	97.46
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	97.45
TIGR01746	367	Thioester-redct thioester reductase domain. It has	97.45
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	97.45
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	97.45
PRK07774	250	short chain dehydrogenase; Provisional	97.44
PRK08278	273	short chain dehydrogenase; Provisional	97.43
PRK12828	239	short chain dehydrogenase; Provisional	97.43
PRK07856	252	short chain dehydrogenase; Provisional	97.43
PRK12937	245	short chain dehydrogenase; Provisional	97.42
PLN02996	491	fatty acyl-CoA reductase	97.42
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	97.41
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	97.41
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	97.39
PRK05875	276	short chain dehydrogenase; Provisional	97.38
PRK08507	275	prephenate dehydrogenase; Validated	97.37
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	97.37
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.36
PRK06914	280	short chain dehydrogenase; Provisional	97.36
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.35
PRK08263	275	short chain dehydrogenase; Provisional	97.34
PRK06101	240	short chain dehydrogenase; Provisional	97.34
PRK07890	258	short chain dehydrogenase; Provisional	97.34
PRK07024	257	short chain dehydrogenase; Provisional	97.34
PRK05876	275	short chain dehydrogenase; Provisional	97.34
PLN02256	304	arogenate dehydrogenase	97.33
PRK07576	264	short chain dehydrogenase; Provisional	97.33
PRK06841	255	short chain dehydrogenase; Provisional	97.32
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	97.32
PRK12367	245	short chain dehydrogenase; Provisional	97.32
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	97.32
PRK08219	227	short chain dehydrogenase; Provisional	97.31
PRK07814	263	short chain dehydrogenase; Provisional	97.3
PRK12480	330	D-lactate dehydrogenase; Provisional	97.29
PRK07063	260	short chain dehydrogenase; Provisional	97.29
COG0300	265	DltE Short-chain dehydrogenases of various substra	97.29
PRK05993	277	short chain dehydrogenase; Provisional	97.28
PRK06181	263	short chain dehydrogenase; Provisional	97.27
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	97.27
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.27
PRK08213	259	gluconate 5-dehydrogenase; Provisional	97.26
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	97.25
PRK08340	259	glucose-1-dehydrogenase; Provisional	97.25
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	97.24
PRK14982	340	acyl-ACP reductase; Provisional	97.24
PRK12827	249	short chain dehydrogenase; Provisional	97.24
PRK12939	250	short chain dehydrogenase; Provisional	97.23
PRK06179	270	short chain dehydrogenase; Provisional	97.23
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	97.23
PTZ00431	260	pyrroline carboxylate reductase; Provisional	97.22
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	97.21
PRK12742	237	oxidoreductase; Provisional	97.21
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	97.21
COG0569	225	TrkA K+ transport systems, NAD-binding component [	97.2
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.2
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	97.2
PRK06500	249	short chain dehydrogenase; Provisional	97.19
PRK12746	254	short chain dehydrogenase; Provisional	97.19
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	97.19
PRK07832	272	short chain dehydrogenase; Provisional	97.19
KOG2305	313	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	97.18
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	97.18
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	97.18
PRK06124	256	gluconate 5-dehydrogenase; Provisional	97.17
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	97.17
PRK06398	258	aldose dehydrogenase; Validated	97.16
PRK07074	257	short chain dehydrogenase; Provisional	97.15
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	97.14
PRK09291	257	short chain dehydrogenase; Provisional	97.14
PRK08264	238	short chain dehydrogenase; Validated	97.14
PRK08818	370	prephenate dehydrogenase; Provisional	97.14
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	97.13
PRK06138	252	short chain dehydrogenase; Provisional	97.13
PRK05854	313	short chain dehydrogenase; Provisional	97.13
PLN02712	667	arogenate dehydrogenase	97.12
PRK13243	333	glyoxylate reductase; Reviewed	97.12
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	97.12
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.12
PRK05650	270	short chain dehydrogenase; Provisional	97.12
TIGR01830	239	3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re	97.11
PRK06197	306	short chain dehydrogenase; Provisional	97.11
PRK08339	263	short chain dehydrogenase; Provisional	97.11
PRK06128	300	oxidoreductase; Provisional	97.1
PRK05693	274	short chain dehydrogenase; Provisional	97.1
PRK06701	290	short chain dehydrogenase; Provisional	97.09
PRK08226	263	short chain dehydrogenase; Provisional	97.08
PRK07825	273	short chain dehydrogenase; Provisional	97.08
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	97.08
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.07
PRK08589	272	short chain dehydrogenase; Validated	97.07
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.07
PRK09009	235	C factor cell-cell signaling protein; Provisional	97.07
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	97.07
PRK08251	248	short chain dehydrogenase; Provisional	97.07
PRK06196	315	oxidoreductase; Provisional	97.06
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	97.06
PRK06523	260	short chain dehydrogenase; Provisional	97.06
PRK12935	247	acetoacetyl-CoA reductase; Provisional	97.06
PRK05866	293	short chain dehydrogenase; Provisional	97.05
PRK06198	260	short chain dehydrogenase; Provisional	97.05
PLN00016	378	RNA-binding protein; Provisional	97.05
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	97.04
PRK07454	241	short chain dehydrogenase; Provisional	97.04
PRK08177	225	short chain dehydrogenase; Provisional	97.04
PRK12747	252	short chain dehydrogenase; Provisional	97.04
PRK12743	256	oxidoreductase; Provisional	97.04
PRK07097	265	gluconate 5-dehydrogenase; Provisional	97.03
PRK06057	255	short chain dehydrogenase; Provisional	97.02
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	97.02
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	97.02
PRK07478	254	short chain dehydrogenase; Provisional	97.02
PRK08085	254	gluconate 5-dehydrogenase; Provisional	97.02
PRK08628	258	short chain dehydrogenase; Provisional	97.01
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	97.01
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.01
PRK09242	257	tropinone reductase; Provisional	97.01
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	97.0
PRK07453	322	protochlorophyllide oxidoreductase; Validated	97.0
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	97.0
PRK15059	292	tartronate semialdehyde reductase; Provisional	97.0
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.99
TIGR02415	254	23BDH acetoin reductases. One member of this famil	96.99
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	96.98
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	96.98
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	96.98
PRK07035	252	short chain dehydrogenase; Provisional	96.98
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	96.98
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	96.97
PRK07577	234	short chain dehydrogenase; Provisional	96.97
PRK08277	278	D-mannonate oxidoreductase; Provisional	96.96
PRK06947	248	glucose-1-dehydrogenase; Provisional	96.96
PLN02780	320	ketoreductase/ oxidoreductase	96.96
PRK12744	257	short chain dehydrogenase; Provisional	96.96
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.95
PRK09186	256	flagellin modification protein A; Provisional	96.95
PRK07060	245	short chain dehydrogenase; Provisional	96.94
PRK05855	582	short chain dehydrogenase; Validated	96.94
PRK05867	253	short chain dehydrogenase; Provisional	96.93
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	96.92
PRK05884	223	short chain dehydrogenase; Provisional	96.92
PRK06949	258	short chain dehydrogenase; Provisional	96.91
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.9
PRK05479	330	ketol-acid reductoisomerase; Provisional	96.9
PRK08936	261	glucose-1-dehydrogenase; Provisional	96.89
COG1088	340	RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope	96.89
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.88
PRK07904	253	short chain dehydrogenase; Provisional	96.88
PRK09072	263	short chain dehydrogenase; Provisional	96.88
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	96.87
PRK07109	334	short chain dehydrogenase; Provisional	96.86
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	96.86
PLN02503	605	fatty acyl-CoA reductase 2	96.86
PRK07831	262	short chain dehydrogenase; Provisional	96.86
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	96.84
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	96.82
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	96.82
PRK06953	222	short chain dehydrogenase; Provisional	96.81
PRK08605	332	D-lactate dehydrogenase; Validated	96.81
PLN02712	667	arogenate dehydrogenase	96.79
PRK07574	385	formate dehydrogenase; Provisional	96.79
PRK08703	239	short chain dehydrogenase; Provisional	96.77
PRK13304	265	L-aspartate dehydrogenase; Reviewed	96.77
PRK07578	199	short chain dehydrogenase; Provisional	96.77
PRK07775	274	short chain dehydrogenase; Provisional	96.76
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	96.76
PRK06123	248	short chain dehydrogenase; Provisional	96.76
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.76
PRK12824	245	acetoacetyl-CoA reductase; Provisional	96.75
PRK06139	330	short chain dehydrogenase; Provisional	96.75
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	96.74
PRK09134	258	short chain dehydrogenase; Provisional	96.73
PRK07023	243	short chain dehydrogenase; Provisional	96.73
KOG1371	343	consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo	96.72
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	96.71
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	96.71
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	96.7
PRK07062	265	short chain dehydrogenase; Provisional	96.7
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	96.69
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	96.69
PLN03139	386	formate dehydrogenase; Provisional	96.68
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.66
PLN02928	347	oxidoreductase family protein	96.65
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	96.65
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	96.64
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.64
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	96.64
PF07993	249	NAD_binding_4: Male sterility protein; InterPro: I	96.63
PRK07677	252	short chain dehydrogenase; Provisional	96.62
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	96.61
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	96.6
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	96.58
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.58
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	96.58
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	96.57
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	96.56
PRK12938	246	acetyacetyl-CoA reductase; Provisional	96.55
PRK05872	296	short chain dehydrogenase; Provisional	96.55
PRK06484	520	short chain dehydrogenase; Validated	96.53
PRK08324	681	short chain dehydrogenase; Validated	96.53
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	96.52
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.51
PRK06114	254	short chain dehydrogenase; Provisional	96.51
PRK06483	236	dihydromonapterin reductase; Provisional	96.5
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.5
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	96.49
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	96.49
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	96.49
PLN02383	344	aspartate semialdehyde dehydrogenase	96.49
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	96.48
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.48
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	96.47
PRK00048	257	dihydrodipicolinate reductase; Provisional	96.44
PRK06940	275	short chain dehydrogenase; Provisional	96.43
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	96.42
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.41
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	96.41
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.41
PRK06484	520	short chain dehydrogenase; Validated	96.41
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	96.39
PRK08017	256	oxidoreductase; Provisional	96.38
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	96.37
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	96.37
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	96.35
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.33
TIGR01831	239	fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas	96.32
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	96.32
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	96.31
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	96.3
PRK03659	601	glutathione-regulated potassium-efflux system prot	96.29
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	96.28
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	96.27
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.24
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.22
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	96.22
PRK06125	259	short chain dehydrogenase; Provisional	96.2
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	96.19
PTZ00075	476	Adenosylhomocysteinase; Provisional	96.18
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	96.17
PRK03562	621	glutathione-regulated potassium-efflux system prot	96.17
PRK07201	657	short chain dehydrogenase; Provisional	96.16
PRK05599	246	hypothetical protein; Provisional	96.15
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	96.12
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	96.11
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	96.11
PRK08862	227	short chain dehydrogenase; Provisional	96.1
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	96.09
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	96.07
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	96.05
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	96.05
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	96.03
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	96.03
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	96.02
PLN02494	477	adenosylhomocysteinase	96.01
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	96.01
PRK09496	453	trkA potassium transporter peripheral membrane com	96.0
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.0
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	95.99
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	95.99
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	95.99
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	95.98
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	95.98
PRK08291	330	ectoine utilization protein EutC; Validated	95.97
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	95.97
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	95.96
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	95.95
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	95.95
PRK08618	325	ornithine cyclodeaminase; Validated	95.95
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	95.93
PRK06436	303	glycerate dehydrogenase; Provisional	95.91
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.85
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	95.84
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	95.83
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	95.83
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	95.83
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	95.83
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	95.81
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	95.81
PRK06407	301	ornithine cyclodeaminase; Provisional	95.8
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.76
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	95.75
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	95.74
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	95.74
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.73
PRK07340	304	ornithine cyclodeaminase; Validated	95.69
PLN02306	386	hydroxypyruvate reductase	95.69
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	95.67
PRK08300	302	acetaldehyde dehydrogenase; Validated	95.66
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	95.65
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	95.63
PRK07791	286	short chain dehydrogenase; Provisional	95.62
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	95.59
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.59
PRK07041	230	short chain dehydrogenase; Provisional	95.58
PRK09730	247	putative NAD(P)-binding oxidoreductase; Provisiona	95.58
KOG4039	238	consensus Serine/threonine kinase TIP30/CC3 [Signa	95.57
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	95.57
TIGR01500	256	sepiapter_red sepiapterin reductase. This model de	95.57
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	95.54
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	95.52
PRK06141	314	ornithine cyclodeaminase; Validated	95.48
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	95.44
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	95.43
PRK07589	346	ornithine cyclodeaminase; Validated	95.43
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	95.42
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.42
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.41
KOG0409	327	consensus Predicted dehydrogenase [General functio	95.4
PRK08223	287	hypothetical protein; Validated	95.35
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	95.32
PRK06719	157	precorrin-2 dehydrogenase; Validated	95.3
PRK06901	322	aspartate-semialdehyde dehydrogenase; Provisional	95.3
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.29

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=100.00  E-value=2.1e-59  Score=434.51  Aligned_cols=240  Identities=68%  Similarity=1.044  Sum_probs=222.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~~  126 (289)
                      |||+|||++|+||+++|+.|+.+++++||+|+|++.++|+++||.|+....+++.+.+++|++++++|||+||+|||.|+
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~   80 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR   80 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence            69999998899999999999999999999999999778999999999744466643233456799999999999999999


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHH
Q 022947          127 KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEV  206 (289)
Q Consensus       127 ~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t~lds~R~~~~lA~~  206 (289)
                      +||++|+|++..|.++++++++.|++++|++|++++|||+|+||+++++++++.+++|++||||+|.|||+|+++++|++
T Consensus        81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~~~~s~~p~~rviG~~~LDs~R~~~~la~~  160 (310)
T cd01337          81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAEL  160 (310)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHHHHhcCCCHHHEEeeechHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcceeeeEEccc-CCCeeeeecccccCCCCCChhhHHHHHHHHHhhhHHHhhhcCCCCcchHHHHHHHHHHHHHHh
Q 022947          207 LGLDPREVDVPVVGGH-AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMCRHMLLPSLPML  285 (289)
Q Consensus       207 l~v~~~~V~~~V~G~h-g~~~~vp~~S~~~v~~~~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~~s~A~a~~~~~~ail  285 (289)
                      +|+++++|+++||||| |+ +|||+||++.+...++++++++|.++|+++|++|+++|.|||+|+||+|.++++++++|+
T Consensus       161 l~v~~~~V~~~v~GeHsGd-s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~~a~a~~~iv~aIl  239 (310)
T cd01337         161 LGLDPAKVNVPVIGGHSGV-TILPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMAYAGARFANSLL  239 (310)
T ss_pred             hCcCHHHEEEEEEecCCCC-ceecccccccccccCCHHHHHHHHHHHHHHHHHHHhCccCCCCcchhHHHHHHHHHHHHH
Confidence            9999999999999999 77 999999999885556666689999999999999999877889999999999999999999


Q ss_pred             cC
Q 022947          286 VS  287 (289)
Q Consensus       286 ~~  287 (289)
                      +|
T Consensus       240 ~~  241 (310)
T cd01337         240 RG  241 (310)
T ss_pred             Hh
Confidence            65

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=6.5e-58  Score=425.06  Aligned_cols=239  Identities=62%  Similarity=0.975  Sum_probs=219.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCCCC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRK  127 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~~~  127 (289)
                      ||+||||+|+||+++|+.|+.+++++||+|+|++++.|+++||.|......+..+.+.++++++++|||+||+|+|.|++
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~   80 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK   80 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence            79999988999999999999999999999999998889999999986433454322223456899999999999999999


Q ss_pred             CCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHc
Q 022947          128 PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVL  207 (289)
Q Consensus       128 ~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t~lds~R~~~~lA~~l  207 (289)
                      +|++|+|++..|+++++++++.|++++|+++++++|||+|++|+++++++++.++||++||||+|.|||+||+++||+++
T Consensus        81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g~LDsaR~r~~la~~l  160 (312)
T TIGR01772        81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVAELK  160 (312)
T ss_pred             CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeeecchHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999888999999999999999998899999999999999


Q ss_pred             CCCCcceeeeEEcccCCCeeeeecccccCCCCCChhhHHHHHHHHHhhhHHHhhhcCCCCcchHHHHHHHHHHHHHHhc
Q 022947          208 GLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMCRHMLLPSLPMLV  286 (289)
Q Consensus       208 ~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~~s~A~a~~~~~~ail~  286 (289)
                      +++|++|+++||||||+++|||+||++++...++++++++|.++|+++|++|+++|.|||+|+||+|.|+++++++|++
T Consensus       161 ~v~~~~v~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~ia~a~~~iv~ail~  239 (312)
T TIGR01772       161 GKDPMEVNVPVIGGHSGETIIPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSMAFAGARFVLSLVR  239 (312)
T ss_pred             CCCHHHeEEEEEEecCCCccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCccCCCChhHHHHHHHHHHHHHHHH
Confidence            9999999999999998779999999998654466666899999999999999998768899999999999999999994

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=100.00  E-value=9.1e-58  Score=420.46  Aligned_cols=233  Identities=41%  Similarity=0.626  Sum_probs=210.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCC--ceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~--~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      +||+|||| |+||+++|+.|+.+++.+|++|+|+++  ++|+++||.|+...  ...... .+.+| ++++|||+||++|
T Consensus         1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~-~~~~y-~~~~~aDiVvitA   77 (313)
T COG0039           1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKIT-GDGDY-EDLKGADIVVITA   77 (313)
T ss_pred             CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEe-cCCCh-hhhcCCCEEEEeC
Confidence            59999999 999999999998888888999999996  79999999998752  233332 22455 8899999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHHH
Q 022947          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANT  201 (289)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R~~~  201 (289)
                      |.||||||+|+|++..|+++++++++++++++||++++++|||+|+|||++    ++.+++|++||||+ |.|||+||++
T Consensus        78 G~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD~~ty~~----~k~sg~p~~rvig~gt~LDsaR~~~  153 (313)
T COG0039          78 GVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVDILTYIA----MKFSGFPKNRVIGSGTVLDSARFRT  153 (313)
T ss_pred             CCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHHHHHHHH----HHhcCCCccceecccchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999865    67889999999999 8999999999


Q ss_pred             HHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCCC--------CChhhHHHHHHHHHhhhHHHhhhcCCCCcchHHH
Q 022947          202 FVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS--------LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM  273 (289)
Q Consensus       202 ~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~--------~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~~s~  273 (289)
                      +||+++++++++|+++|+||||+ +|||+||++++++.        .+++++++|.++||++|++|+++| |.| |+||+
T Consensus       154 ~lae~~~v~~~~V~~~ViGeHGd-t~vp~~S~a~v~G~pl~~~~~~~~~~~~~~i~~~v~~~g~eII~~k-G~~-t~~~~  230 (313)
T COG0039         154 FLAEKLGVSPKDVHAYVIGEHGD-TMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAK-GAG-TYYGP  230 (313)
T ss_pred             HHHHHhCCChhHceeeEeccCCC-ceEEeeeeeeECCEEHHHHhhcccHhHHHHHHHHHHhhHHHHHHcc-Ccc-chhhH
Confidence            99999999999999999999998 99999999998651        223567899999999999999998 555 99999


Q ss_pred             HHHHHHHHHHHhcCCC
Q 022947          274 CRHMLLPSLPMLVSEA  289 (289)
Q Consensus       274 A~a~~~~~~ail~~~~  289 (289)
                      |.|+++|+++|++|++
T Consensus       231 A~a~a~~~~ail~d~~  246 (313)
T COG0039         231 AAALARMVEAILRDEK  246 (313)
T ss_pred             HHHHHHHHHHHHcCCC
Confidence            9999999999999973

>PLN00106 malate dehydrogenase

Probab=100.00  E-value=2.3e-56  Score=416.23  Aligned_cols=252  Identities=75%  Similarity=1.141  Sum_probs=232.4

Q ss_pred             cccccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCC
Q 022947           36 MDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGM  115 (289)
Q Consensus        36 ~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~a  115 (289)
                      ..|+.+++-.+.||+||||+|+||+++++.|+.+++++||+|+|++++.++++||.|+.....+..+.+++|++++++||
T Consensus         8 ~~~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~a   87 (323)
T PLN00106          8 RACRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGA   87 (323)
T ss_pred             hccccccCCCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCC
Confidence            36999999999999999988999999999999999999999999998889999999987655666544566788999999


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeecc
Q 022947          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLD  195 (289)
Q Consensus       116 DiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t~ld  195 (289)
                      |+||++||.|+++|++|.|++..|.++++++++.+++++|+++++++|||+|.+++++++++++.+++||+|+||+|.||
T Consensus        88 DiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~~LD  167 (323)
T PLN00106         88 DLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLD  167 (323)
T ss_pred             CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEecch
Confidence            99999999999999999999999999999999999999999999999999996666666777889999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCCCCChhhHHHHHHHHHhhhHHHhhhcCCCCcchHHHHH
Q 022947          196 VVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMCR  275 (289)
Q Consensus       196 s~R~~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~~s~A~  275 (289)
                      ++||++++|+++|+++.+|+++|+||||+++|||+||++.+...++++++++|.++|+++|++|+++|.|||+|+||+|.
T Consensus       168 s~Rl~~~lA~~lgv~~~~V~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~~~a~  247 (323)
T PLN00106        168 VVRANTFVAEKKGLDPADVDVPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKAGAGSATLSMAY  247 (323)
T ss_pred             HHHHHHHHHHHhCCChhheEEEEEEeCCCccEeeehhcceecccCCHHHHHHHHHHHHHHHHHHHhCccCCCCchHHHHH
Confidence            99999999999999999999999999977799999999977544666679999999999999999987678999999999


Q ss_pred             HHHHHHHHHhcC
Q 022947          276 HMLLPSLPMLVS  287 (289)
Q Consensus       276 a~~~~~~ail~~  287 (289)
                      ++++++++|++|
T Consensus       248 a~~~ii~ail~~  259 (323)
T PLN00106        248 AAARFADACLRG  259 (323)
T ss_pred             HHHHHHHHHHhc
Confidence            999999999995

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=2.9e-55  Score=406.99  Aligned_cols=230  Identities=29%  Similarity=0.405  Sum_probs=208.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCC---ceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN---AVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~---~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      ||+|||+ |+||+++|+.|+.+++++||+|+|+++  ++|+++||.|...+   ..++...  +|| ++++|||+||+||
T Consensus         1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~--~~y-~~~~~aDivvita   76 (307)
T cd05290           1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRA--GDY-DDCADADIIVITA   76 (307)
T ss_pred             CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEE--CCH-HHhCCCCEEEECC
Confidence            7999998 999999999999999999999999987  78999999997542   2455443  465 8899999999999


Q ss_pred             CCCCCCCCc--hhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHH
Q 022947          123 GVPRKPGMT--RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRA  199 (289)
Q Consensus       123 g~~~~~g~~--r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R~  199 (289)
                      |.|++||++  |+|++..|+++++++++.+++++|+++++++|||+|+|||++    ++.+|||++||||+ |.|||+||
T Consensus        77 G~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvDv~t~~~----~k~sg~p~~rviG~gt~LDs~R~  152 (307)
T cd05290          77 GPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDIAVYIA----ATEFDYPANKVIGTGTMLDTARL  152 (307)
T ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHHHHHHHH----HHHhCcChhheecccchHHHHHH
Confidence            999999999  699999999999999999999999999999999999999765    66789999999999 89999999


Q ss_pred             HHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCCC-----C-----ChhhHHHHHHHHHhhhHHHhhhcCCCCcc
Q 022947          200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS-----L-----TPTEIDYLTDRIQNGGTEVVEAKTGAGSA  269 (289)
Q Consensus       200 ~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~-----~-----~~~~~~~i~~~v~~~g~~i~~~k~g~g~t  269 (289)
                      ++++|+++|++|++|++|||||||+ +|||+||++++++.     +     ++.++++|.++|+++|++|++.|   |+|
T Consensus       153 ~~~la~~l~v~~~~V~~~ViGeHGd-s~vp~wS~~~v~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~K---G~t  228 (307)
T cd05290         153 RRIVADKYGVDPKNVTGYVLGEHGS-HAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFNRK---GWT  228 (307)
T ss_pred             HHHHHHHhCCCcccEEEEEEecCCC-ceEEeeeeeEECCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHcc---Cee
Confidence            9999999999999999999999998 99999999998641     1     12247899999999999999954   789


Q ss_pred             hHHHHHHHHHHHHHHhcCCC
Q 022947          270 TLSMCRHMLLPSLPMLVSEA  289 (289)
Q Consensus       270 ~~s~A~a~~~~~~ail~~~~  289 (289)
                      +|++|.++++++++|++|+.
T Consensus       229 ~~~ia~a~~~ii~ail~d~~  248 (307)
T cd05290         229 NAGIAKSASRLIKAILLDER  248 (307)
T ss_pred             hHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999863

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=8.5e-55  Score=386.01  Aligned_cols=230  Identities=23%  Similarity=0.367  Sum_probs=213.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccC---CceEEEEecCCCHHhhhCCCCEEEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT---NAVVRGFLGQQQLEDALTGMDIVII  120 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~---~~~v~~~~~t~d~~eal~~aDiVIi  120 (289)
                      ..||+|+|+ |.||+++|+.++.+++.+|++|+|.++  ++|++|||+|...   .+++..   ..|| .+.+++++||+
T Consensus        20 ~~KItVVG~-G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~---~~Dy-~~sa~S~lvIi   94 (332)
T KOG1495|consen   20 HNKITVVGV-GQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVA---SKDY-SVSANSKLVII   94 (332)
T ss_pred             CceEEEEcc-chHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccccccCCceEe---cCcc-cccCCCcEEEE
Confidence            569999999 999999999999999999999999998  7999999999874   344442   3576 78999999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHH
Q 022947          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRA  199 (289)
Q Consensus       121 tag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R~  199 (289)
                      |||..+++|++|++++++|+.+++.+.+++.+|.|+++++++|||+|+|||++    ||.+|||++||||. |.|||+||
T Consensus        95 TAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDilTYv~----wKLSgfP~nRViGsGcnLDsaRF  170 (332)
T KOG1495|consen   95 TAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDILTYVT----WKLSGFPKNRVIGSGCNLDSARF  170 (332)
T ss_pred             ecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHHHHHHH----HHHcCCcccceeccCcCccHHHH
Confidence            99999999999999999999999999999999999999999999999999764    88999999999999 99999999


Q ss_pred             HHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCC------------CCChhhHHHHHHHHHhhhHHHhhhcCCCC
Q 022947          200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC------------SLTPTEIDYLTDRIQNGGTEVVEAKTGAG  267 (289)
Q Consensus       200 ~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~------------~~~~~~~~~i~~~v~~~g~~i~~~k~g~g  267 (289)
                      |++++++||++|++++++|+||||| +-||+||.+.+.+            ..+++.|+++.++|...+|+|+++|   |
T Consensus       171 ryLi~~~Lg~~pss~hgwIiGEHGd-SsV~vWSgvniAGv~l~~l~~~~~t~~d~e~w~eihK~v~~sayeviklK---G  246 (332)
T KOG1495|consen  171 RYLIGNRLGVHPSSCHGWIIGEHGD-SSVPVWSGVNIAGVSLKDLNPDLGTDYDPENWKEIHKQVVDSAYEVIKLK---G  246 (332)
T ss_pred             HHHHHHHhCCCcccceEEEeeccCC-ccceecccccccceEHhHhChhhcCCCCHHHHHHHHHHHHHHHHHHHHhc---C
Confidence            9999999999999999999999999 8999999998743            2466779999999999999999986   7


Q ss_pred             cchHHHHHHHHHHHHHHhcCC
Q 022947          268 SATLSMCRHMLLPSLPMLVSE  288 (289)
Q Consensus       268 ~t~~s~A~a~~~~~~ail~~~  288 (289)
                      +|+|++|.++++++++|++|+
T Consensus       247 yTswaIglsva~l~~ail~n~  267 (332)
T KOG1495|consen  247 YTSWAIGLSVADLAQAILRNL  267 (332)
T ss_pred             chHHHHHHHHHHHHHHHHhCc
Confidence            999999999999999999996

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=6.2e-54  Score=399.09  Aligned_cols=234  Identities=26%  Similarity=0.360  Sum_probs=209.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCce-EEEEecCCCHHhhhCCCCEEEEc
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAV-VRGFLGQQQLEDALTGMDIVIIP  121 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~-v~~~~~t~d~~eal~~aDiVIit  121 (289)
                      ..+||+|||+ |+||+++++.|+..++.+||+|+|+++  +.|+++||+|+..... ... ..++|| ++++|||+||+|
T Consensus         2 ~~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v-~~~~dy-~~~~~adivvit   78 (312)
T cd05293           2 PRNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKI-EADKDY-SVTANSKVVIVT   78 (312)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEE-EECCCH-HHhCCCCEEEEC
Confidence            3569999998 999999999999999999999999987  6899999999873221 122 224577 679999999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHH
Q 022947          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRAN  200 (289)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R~~  200 (289)
                      +|.++++|++|.|++.+|+++++++++.|++++|+++++++|||+|+||+++    ++.+++|++||||+ |.||++|++
T Consensus        79 aG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~----~k~sg~p~~~viG~gt~Ld~~R~~  154 (312)
T cd05293          79 AGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVA----WKLSGLPKHRVIGSGCNLDSARFR  154 (312)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHH----HHHhCCCHHHEEecCchHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999764    66789999999999 999999999


Q ss_pred             HHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCCC------------CChhhHHHHHHHHHhhhHHHhhhcCCCCc
Q 022947          201 TFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS------------LTPTEIDYLTDRIQNGGTEVVEAKTGAGS  268 (289)
Q Consensus       201 ~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~------------~~~~~~~~i~~~v~~~g~~i~~~k~g~g~  268 (289)
                      +++|+++++++++|+++||||||+ ++||+||++++++.            .+++++++|.++|+++|++|++.|   |+
T Consensus       155 ~~la~~l~v~~~~v~~~v~GeHG~-s~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k---g~  230 (312)
T cd05293         155 YLIAERLGVAPSSVHGWIIGEHGD-SSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIKLK---GY  230 (312)
T ss_pred             HHHHHHhCCChhhEEEEEeecCCC-CccccceeceECCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHhc---CC
Confidence            999999999999999999999998 99999999998641            123458899999999999999954   78


Q ss_pred             chHHHHHHHHHHHHHHhcCCC
Q 022947          269 ATLSMCRHMLLPSLPMLVSEA  289 (289)
Q Consensus       269 t~~s~A~a~~~~~~ail~~~~  289 (289)
                      |+|++|.++++++++|++|+.
T Consensus       231 t~~~~a~a~~~ii~ail~d~~  251 (312)
T cd05293         231 TSWAIGLSVADLVDAILRNTG  251 (312)
T ss_pred             chHHHHHHHHHHHHHHHcCCC
Confidence            999999999999999999863

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PTZ00325 malate dehydrogenase; Provisional

Probab=100.00  E-value=1.5e-53  Score=397.00  Aligned_cols=242  Identities=62%  Similarity=0.926  Sum_probs=218.5

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      .+++||+|||++|.||+++++.|+..++.+||+|+|++.+.++++||.|......+.......+++++++|||+||+++|
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG   85 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG   85 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence            35779999998899999999999999999999999996588999999998654344433222343589999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHH
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFV  203 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t~lds~R~~~~l  203 (289)
                      .|++++++|.+++..|+++++++++.|++++|+++++++|||+|+|||++.+.+++.+++||+||||++.|||+||+++|
T Consensus        86 ~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~sg~p~~~viG~g~LDs~R~r~~l  165 (321)
T PTZ00325         86 VPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGVYDPRKLFGVTTLDVVRARKFV  165 (321)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhccCCChhheeechhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999987656678899999999999889999999999


Q ss_pred             HHHcCCCCcceeeeEEcccCCCeeeeecccccCCCCCChhhHHHHHHHHHhhhHHHhhhcCCCCcchHHHHHHHHHHHHH
Q 022947          204 AEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMCRHMLLPSLP  283 (289)
Q Consensus       204 A~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~~s~A~a~~~~~~a  283 (289)
                      |++++++|++|+++||||||++++||+||++.  .+++++++++|.++|+++|++|+++|+|||+|+||+|.++++++++
T Consensus       166 a~~l~v~~~~V~~~VlGeHGd~s~v~~~S~~g--~~l~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~g~a~a~~~i~~a  243 (321)
T PTZ00325        166 AEALGMNPYDVNVPVVGGHSGVTIVPLLSQTG--LSLPEEQVEQITHRVQVGGDEVVKAKEGAGSATLSMAYAAAEWSTS  243 (321)
T ss_pred             HHHhCcChhheEEEEEeecCCcccccchhccC--CCCCHHHHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHH
Confidence            99999999999999999999857999999993  3577777999999999999999999878899999999999999999


Q ss_pred             HhcC
Q 022947          284 MLVS  287 (289)
Q Consensus       284 il~~  287 (289)
                      |++|
T Consensus       244 il~~  247 (321)
T PTZ00325        244 VLKA  247 (321)
T ss_pred             HHhh
Confidence            9965

>PLN02602 lactate dehydrogenase

Probab=100.00  E-value=4.2e-53  Score=398.25  Aligned_cols=232  Identities=24%  Similarity=0.385  Sum_probs=208.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCC-ceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN-AVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~-~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      +||+|||+ |+||+++++.|+..++++||+|+|+++  +.|+++||.|+... ...... .++|| ++++|||+||++||
T Consensus        38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~-~~~dy-~~~~daDiVVitAG  114 (350)
T PLN02602         38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKIL-ASTDY-AVTAGSDLCIVTAG  114 (350)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEE-eCCCH-HHhCCCCEEEECCC
Confidence            69999998 999999999999999999999999988  68999999998642 223332 23466 67999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHHHH
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTF  202 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R~~~~  202 (289)
                      .|+++|++|.|++..|+++++++++.|+++||+++++++|||+|++|+++    ++.++||++||||+ |.||++|++++
T Consensus       115 ~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvdv~t~~~----~k~sg~p~~rviG~gt~LDs~R~r~~  190 (350)
T PLN02602        115 ARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVDVLTYVA----WKLSGFPANRVIGSGTNLDSSRFRFL  190 (350)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHH----HHHhCCCHHHEEeecchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999765    56678999999999 69999999999


Q ss_pred             HHHHcCCCCcceeeeEEcccCCCeeeeecccccCCC------------CCChhhHHHHHHHHHhhhHHHhhhcCCCCcch
Q 022947          203 VAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC------------SLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT  270 (289)
Q Consensus       203 lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~------------~~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~  270 (289)
                      ||+++|+++++|+++||||||+ ++||+||++++++            .+++++++++.++++++|++|++.|   |+|+
T Consensus       191 lA~~l~v~~~~V~~~ViGeHGd-s~vp~wS~~~i~G~pl~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~K---G~t~  266 (350)
T PLN02602        191 IADHLDVNAQDVQAYIVGEHGD-SSVALWSSVSVGGVPVLSFLEKQQIAYEKETLEEIHRAVVDSAYEVIKLK---GYTS  266 (350)
T ss_pred             HHHHhCCCccceeeeEEecCCC-ceEeeeeeeeECCEEHHHHhhccCCccCHHHHHHHHHHHHHHHHHHHhcC---CccH
Confidence            9999999999999999999998 9999999998853            1233457899999999999999954   7899


Q ss_pred             HHHHHHHHHHHHHHhcCCC
Q 022947          271 LSMCRHMLLPSLPMLVSEA  289 (289)
Q Consensus       271 ~s~A~a~~~~~~ail~~~~  289 (289)
                      |++|.++++++++|++|+.
T Consensus       267 ~gia~a~a~ii~ail~d~~  285 (350)
T PLN02602        267 WAIGYSVASLVRSLLRDQR  285 (350)
T ss_pred             HHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999973

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=100.00  E-value=3e-53  Score=395.75  Aligned_cols=234  Identities=28%  Similarity=0.387  Sum_probs=207.6

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCcc-----EEEEEeCCC----chhHHhhhhcccC-C-ceEEEEecCCCHHhhh
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT-N-AVVRGFLGQQQLEDAL  112 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~-----eI~LvD~~~----~~g~~~DL~~~~~-~-~~v~~~~~t~d~~eal  112 (289)
                      +++.||+||||+|+||+++++.|+.+++++     ||+|+|+++    ++|+++||.|+.. . ..+...  +++ ++++
T Consensus         1 ~~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~   77 (323)
T TIGR01759         1 KKPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVAT--TDP-EEAF   77 (323)
T ss_pred             CCCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEe--cCh-HHHh
Confidence            367899999988999999999999999999     999999964    6899999999862 1 223322  344 4899


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CcEEEEecCCCcccHHHHHHHHHHhC-CCCCCcEEE
Q 022947          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVG-TYDPKRLLG  190 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p-~aiviv~tNPvd~~t~~~~~~~~~~~-~~~~~kviG  190 (289)
                      +|||+||+|||.|+++|++|+|++..|++++++++++|++++| +++++++|||+|+|||++    ++.+ +||++||||
T Consensus        78 ~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~----~k~s~g~p~~rViG  153 (323)
T TIGR01759        78 KDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALIA----SKNAPDIPPKNFSA  153 (323)
T ss_pred             CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCHHHEEE
Confidence            9999999999999999999999999999999999999999998 999999999999999765    6678 999999999


Q ss_pred             eeeccHHHHHHHHHHHcCCCCccee-eeEEcccCCCeeeeecccccCCC----C-CChhh--HHHHHHHHHhhhHHHhhh
Q 022947          191 VTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPSC----S-LTPTE--IDYLTDRIQNGGTEVVEA  262 (289)
Q Consensus       191 ~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg~~~~vp~~S~~~v~~----~-~~~~~--~~~i~~~v~~~g~~i~~~  262 (289)
                      +|.||++||+++||++++++|++|+ .+||||||+ ++||+||++++++    . ++++.  +++|.++++++|++|++.
T Consensus       154 ~t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~  232 (323)
T TIGR01759       154 MTRLDHNRAKYQLAAKAGVPVSDVKNVIIWGNHSN-TQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEA  232 (323)
T ss_pred             eeHHHHHHHHHHHHHHhCcChHHeEEeEEEecCCC-ceeeccccCEECCccHHHHhcchhhHHHHHHHHHHhhHHHHHhc
Confidence            9999999999999999999999996 569999998 9999999999864    1 33333  689999999999999996


Q ss_pred             cCCCCcchH-HHHHHHHHHHHHHhcCC
Q 022947          263 KTGAGSATL-SMCRHMLLPSLPMLVSE  288 (289)
Q Consensus       263 k~g~g~t~~-s~A~a~~~~~~ail~~~  288 (289)
                      |   |+|+| ++|.++++++++|++|+
T Consensus       233 k---G~t~~~~~a~a~~~iv~ail~~~  256 (323)
T TIGR01759       233 R---GASSAASAANAAIDHVRDWVTGT  256 (323)
T ss_pred             c---CCcchHHHHHHHHHHHHHHHcCC
Confidence            5   67888 57799999999999996

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PRK05086 malate dehydrogenase; Provisional

Probab=100.00  E-value=5.8e-52  Score=386.04  Aligned_cols=239  Identities=60%  Similarity=0.922  Sum_probs=215.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHHh-CCCccEEEEEeCCC-chhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~-~g~~~eI~LvD~~~-~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      |||+||||+|.||+++++.|.. .+...+++|+|+++ ..++++|+.|......+... ..+|++++++++|+||+|+|.
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~-~~~d~~~~l~~~DiVIitaG~   79 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGF-SGEDPTPALEGADVVLISAGV   79 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEe-CCCCHHHHcCCCCEEEEcCCC
Confidence            6999999999999999998865 56778999999987 56788999985322234331 135767899999999999999


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHH
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVA  204 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t~lds~R~~~~lA  204 (289)
                      +++++++|.+++..|+++++++++.|++++|+++++++|||+|+||+++++.+++.+++|++||||+|.|||+|+++++|
T Consensus        80 ~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~D~~t~~~~~~~~~~sg~p~~rvig~~~Lds~R~~~~ia  159 (312)
T PRK05086         80 ARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFVA  159 (312)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHHHHHHHHhcCCCHHHEEeeecHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999888899999999999999999999999999


Q ss_pred             HHcCCCCcceeeeEEcccCCCeeeeecccccCCCCCChhhHHHHHHHHHhhhHHHhhhcCCCCcchHHHHHHHHHHHHHH
Q 022947          205 EVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMCRHMLLPSLPM  284 (289)
Q Consensus       205 ~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~~s~A~a~~~~~~ai  284 (289)
                      ++|+++|++|+++||||||++++||+||++ -+.+++++++++|.++|+++|++|+++|.|+|+|+||+|.++++++++|
T Consensus       160 ~~l~~~~~~v~~~v~GeHg~~s~~p~~S~~-~g~~l~~~~~~~i~~~v~~~g~~ii~~k~~~g~t~~~~a~a~~~~v~ai  238 (312)
T PRK05086        160 ELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSL  238 (312)
T ss_pred             HHhCCChhheEEEEEEecCCCceecccccc-CCccCCHHHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHH
Confidence            999999999999999999877999999999 3335777779999999999999999988778999999999999999999


Q ss_pred             hcC
Q 022947          285 LVS  287 (289)
Q Consensus       285 l~~  287 (289)
                      ++|
T Consensus       239 ~~~  241 (312)
T PRK05086        239 VRA  241 (312)
T ss_pred             Hhc
Confidence            965

>PRK05442 malate dehydrogenase; Provisional

Probab=100.00  E-value=1.7e-52  Score=391.20  Aligned_cols=233  Identities=23%  Similarity=0.335  Sum_probs=207.5

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCcc-----EEEEEeCCC----chhHHhhhhcccC-C-ceEEEEecCCCHHhhh
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT-N-AVVRGFLGQQQLEDAL  112 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~-----eI~LvD~~~----~~g~~~DL~~~~~-~-~~v~~~~~t~d~~eal  112 (289)
                      ++++||+||||+|+||+++++.|...++++     ||+|+|+++    ++|+++||.|+.. . ..+...  +++ ++++
T Consensus         2 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~--~~~-y~~~   78 (326)
T PRK05442          2 KAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVIT--DDP-NVAF   78 (326)
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEe--cCh-HHHh
Confidence            457899999988999999999999999988     999999954    5899999999862 1 233332  345 4899


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhC-CCCCCcEEE
Q 022947          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVG-TYDPKRLLG  190 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~-~~~~~kviG  190 (289)
                      +|||+||++||.|+++|++|+|++..|++++++++++|++++ |+++++++|||+|+|||++    ++.+ +||++||||
T Consensus        79 ~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~----~k~s~g~p~~rViG  154 (326)
T PRK05442         79 KDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIA----MKNAPDLPAENFTA  154 (326)
T ss_pred             CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHH----HHHcCCCCHHHEEe
Confidence            999999999999999999999999999999999999999988 8999999999999999875    5667 999999999


Q ss_pred             eeeccHHHHHHHHHHHcCCCCcceeee-EEcccCCCeeeeecccccCCCC-----CChhh--HHHHHHHHHhhhHHHhhh
Q 022947          191 VTMLDVVRANTFVAEVLGLDPREVDVP-VVGGHAGVTILPLLSQVKPSCS-----LTPTE--IDYLTDRIQNGGTEVVEA  262 (289)
Q Consensus       191 ~t~lds~R~~~~lA~~l~v~~~~V~~~-V~G~hg~~~~vp~~S~~~v~~~-----~~~~~--~~~i~~~v~~~g~~i~~~  262 (289)
                      +|.||++||+++||++|+++|++|+++ ||||||+ ++||+||++++++.     +++++  +++|.++++++|++|++.
T Consensus       155 ~t~LDs~R~r~~la~~l~v~~~~V~~~vV~GeHG~-s~~~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~  233 (326)
T PRK05442        155 MTRLDHNRALSQLAAKAGVPVADIKKMTVWGNHSA-TQYPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQKRGAAIIEA  233 (326)
T ss_pred             eeHHHHHHHHHHHHHHhCcChHHeEEeEEEECCcC-ceeeccccCEECCEEHHHHccchhhHHHHHHHHHHhhHHHHHhC
Confidence            999999999999999999999999986 5999998 99999999999652     34433  679999999999999995


Q ss_pred             cCCCCcchHHHHHH-HHHHHHHHhcC
Q 022947          263 KTGAGSATLSMCRH-MLLPSLPMLVS  287 (289)
Q Consensus       263 k~g~g~t~~s~A~a-~~~~~~ail~~  287 (289)
                      |   |+|+|++|.+ +++++++|++|
T Consensus       234 k---G~t~~~~a~~~~~~iv~ail~~  256 (326)
T PRK05442        234 R---GASSAASAANAAIDHVRDWVLG  256 (326)
T ss_pred             c---CCccHHHHHHHHHHHHHHHHhC
Confidence            4   7899999999 59999999998

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=100.00  E-value=1.6e-52  Score=387.62  Aligned_cols=227  Identities=24%  Similarity=0.407  Sum_probs=204.4

Q ss_pred             EEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCC--ceEEEEecCCCHHhhhCCCCEEEEcCCCCC
Q 022947           51 VLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (289)
Q Consensus        51 IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~--~~v~~~~~t~d~~eal~~aDiVIitag~~~  126 (289)
                      |||+ |+||+++++.|+..++++||+|+|+++  ++|+++||.|+...  ..+...  .++| ++++|||+||+++|.|+
T Consensus         1 iIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~--~~~~-~~~~daDivVitag~~r   76 (299)
T TIGR01771         1 IIGA-GNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIR--SGDY-SDCKDADLVVITAGAPQ   76 (299)
T ss_pred             CCCc-CHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEe--cCCH-HHHCCCCEEEECCCCCC
Confidence            6898 999999999999999999999999987  79999999998642  233432  3465 89999999999999999


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHHHHHHH
Q 022947          127 KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAE  205 (289)
Q Consensus       127 ~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R~~~~lA~  205 (289)
                      ++|++|.|++..|+++++++++.|++++|+++++++|||+|+||+++    ++.+++|++||||+ |.|||+|+++++|+
T Consensus        77 k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~----~~~sg~p~~~viG~gt~LDs~R~~~~la~  152 (299)
T TIGR01771        77 KPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDILTYVA----WKLSGFPKNRVIGSGTVLDTARLRYLLAE  152 (299)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH----HHHhCCCHHHEEeccchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999764    66789999999999 79999999999999


Q ss_pred             HcCCCCcceeeeEEcccCCCeeeeecccccCCCC-----CC------hhhHHHHHHHHHhhhHHHhhhcCCCCcchHHHH
Q 022947          206 VLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS-----LT------PTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMC  274 (289)
Q Consensus       206 ~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~-----~~------~~~~~~i~~~v~~~g~~i~~~k~g~g~t~~s~A  274 (289)
                      ++++++++|+++||||||+ +|||+||++++++.     ++      +.++++|.++++++|++|++.|   |+|+|++|
T Consensus       153 ~l~v~~~~V~~~v~GeHG~-s~vp~~S~~~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~k---G~t~~~~a  228 (299)
T TIGR01771       153 KLGVDPQSVHAYIIGEHGD-SEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIINRK---GATYYGIG  228 (299)
T ss_pred             HhCcCcCeEEEEEEecCCC-ceeeceeeeEECCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhhcC---CeeeHHHH
Confidence            9999999999999999998 99999999998641     11      2347899999999999999954   78999999


Q ss_pred             HHHHHHHHHHhcCCC
Q 022947          275 RHMLLPSLPMLVSEA  289 (289)
Q Consensus       275 ~a~~~~~~ail~~~~  289 (289)
                      .++++++++|++|+.
T Consensus       229 ~a~~~~i~ail~d~~  243 (299)
T TIGR01771       229 MAVARIVEAILHDEN  243 (299)
T ss_pred             HHHHHHHHHHHcCCC
Confidence            999999999999973

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=100.00  E-value=2e-51  Score=382.94  Aligned_cols=232  Identities=25%  Similarity=0.398  Sum_probs=210.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCC-ceEEEEecCCCHHhhhCCCCEEEEc
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN-AVVRGFLGQQQLEDALTGMDIVIIP  121 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~-~~v~~~~~t~d~~eal~~aDiVIit  121 (289)
                      ..+||+|||+ |.||+++++.|+..++++||+|+|+++  ++|+++||.|+... .++...  +++| ++++|||+||++
T Consensus         5 ~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~--~~~~-~~~~~adivIit   80 (315)
T PRK00066          5 QHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIY--AGDY-SDCKDADLVVIT   80 (315)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEE--eCCH-HHhCCCCEEEEe
Confidence            4569999998 999999999999999999999999987  68999999998642 234443  3465 789999999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHH
Q 022947          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRAN  200 (289)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R~~  200 (289)
                      +|.|+++|++|.|++..|+++++++++.+++++|+++++++|||+|+||+++    ++.+++|++||||+ |.||++|++
T Consensus        81 ag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d~~~~~~----~k~sg~p~~~viG~gt~LDs~R~~  156 (315)
T PRK00066         81 AGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVDILTYAT----WKLSGFPKERVIGSGTSLDSARFR  156 (315)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHHHHHHHH----HHHhCCCHHHEeecCchHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999765    55679999999999 799999999


Q ss_pred             HHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCC-----------CCChhhHHHHHHHHHhhhHHHhhhcCCCCcc
Q 022947          201 TFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-----------SLTPTEIDYLTDRIQNGGTEVVEAKTGAGSA  269 (289)
Q Consensus       201 ~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~-----------~~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t  269 (289)
                      +++|+++|+++++|+++||||||+ +++|+||++++++           .+++++++++.++++++|++|++.|   |++
T Consensus       157 ~~la~~l~v~~~~V~~~viGeHG~-s~v~~~S~~~v~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~k---g~t  232 (315)
T PRK00066        157 YMLSEKLDVDPRSVHAYIIGEHGD-TEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIEKK---GAT  232 (315)
T ss_pred             HHHHHHhCCCcccEEEEEEecCCC-cceecceeceECCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHHHhcC---Cee
Confidence            999999999999999999999998 9999999999864           1344668899999999999999964   789


Q ss_pred             hHHHHHHHHHHHHHHhcCC
Q 022947          270 TLSMCRHMLLPSLPMLVSE  288 (289)
Q Consensus       270 ~~s~A~a~~~~~~ail~~~  288 (289)
                      +|++|.++++++++|++|+
T Consensus       233 ~~~~a~~~~~i~~ail~~~  251 (315)
T PRK00066        233 YYGIAMALARITKAILNNE  251 (315)
T ss_pred             hHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999986

>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=1.9e-51  Score=366.23  Aligned_cols=266  Identities=67%  Similarity=1.014  Sum_probs=249.9

Q ss_pred             hhhHHHHHhhcCCCccccccccccccccccccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHh
Q 022947            9 NQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA   88 (289)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~   88 (289)
                      ++++.|..+++-+            .+..|+.....+..||+|.||+|-+|+.+.++|+++++++++.|||+....|.+.
T Consensus         3 ~~~~~~~~~~~~~------------~~~~~~~~~~~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVaa   70 (345)
T KOG1494|consen    3 LKSLIRSSASLSS------------GPKRVFSSGSQRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVAA   70 (345)
T ss_pred             hHHHHHhhhhhcc------------CCcccccccccCcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCCcccc
Confidence            5677777777765            3455666666777899999999999999999999999999999999998999999


Q ss_pred             hhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcc
Q 022947           89 DISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS  168 (289)
Q Consensus        89 DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~  168 (289)
                      ||+|.++...+..+.+.+.+++++++||+|||-||+||||||+|+|++..|+.++++++..+.++||++.+.++|||+|.
T Consensus        71 DlSHI~T~s~V~g~~g~~~L~~al~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNs  150 (345)
T KOG1494|consen   71 DLSHINTNSSVVGFTGADGLENALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNS  150 (345)
T ss_pred             cccccCCCCceeccCChhHHHHHhcCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCcccc
Confidence            99999988889988877889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHcCCCC-cceeeeEEcccCCCeeeeecccccCCCCCChhhHHH
Q 022947          169 TVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDP-REVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDY  247 (289)
Q Consensus       169 ~t~~~~~~~~~~~~~~~~kviG~t~lds~R~~~~lA~~l~v~~-~~V~~~V~G~hg~~~~vp~~S~~~v~~~~~~~~~~~  247 (289)
                      .++++.|++++.+.|+|+|+||+|.||..|.++++++.++++| ++++++|+|+|.+.|++|++|++.+...+++++++.
T Consensus       151 tVPIaaevlKk~G~ydpkklfGVTtLDvVRA~tFv~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~p~~~~~~~~~~~  230 (345)
T KOG1494|consen  151 TVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTFVAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCKPPFRFTDDEIEA  230 (345)
T ss_pred             cchHHHHHHHHcCCCCccceeceehhhhhhHHHHHHHHhCCCchhcCCcceecCcCCceEeeecccCCCcccCCHHHHHH
Confidence            9999999999999999999999999999999999999999999 569999999999889999999999988899999999


Q ss_pred             HHHHHHhhhHHHhhhcCCCCcchHHHHHHHHHHHHHHhc
Q 022947          248 LTDRIQNGGTEVVEAKTGAGSATLSMCRHMLLPSLPMLV  286 (289)
Q Consensus       248 i~~~v~~~g~~i~~~k~g~g~t~~s~A~a~~~~~~ail~  286 (289)
                      ++.+++.+|.||++.|.|+||+.+|+|+|.++|++++++
T Consensus       231 Lt~RiQ~gGtEVV~AKaGaGSATLSMAyAga~fa~s~lr  269 (345)
T KOG1494|consen  231 LTHRIQNGGTEVVKAKAGAGSATLSMAYAGAKFADSLLR  269 (345)
T ss_pred             HHHHHHhCCceEEEeccCCCchhhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999875

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=100.00  E-value=1e-50  Score=390.20  Aligned_cols=238  Identities=23%  Similarity=0.259  Sum_probs=209.3

Q ss_pred             cCCCCCCCEEEEEcCCCccHHHHHHHHHhC-------CCccEEEEEeCCC--chhHHhhhhcccC--CceEEEEecCCCH
Q 022947           40 AKGGSPGFKVAVLGAAGGIGQPLAMLMKIN-------PLVSVLHLYDVVN--TPGVTADISHMDT--NAVVRGFLGQQQL  108 (289)
Q Consensus        40 ~~~~~~~~KI~IIGaaG~VGs~la~~L~~~-------g~~~eI~LvD~~~--~~g~~~DL~~~~~--~~~v~~~~~t~d~  108 (289)
                      ++.-+++.||+|||++|+||+++++.|+.+       +++.||+|+|+++  ++|+++||.|+..  ...+...  +++|
T Consensus        94 ~~~~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~--~~~y  171 (444)
T PLN00112         94 TKSWKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIG--IDPY  171 (444)
T ss_pred             hhcCCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEe--cCCH
Confidence            444566889999999999999999999998       7777999999988  7999999999862  2234322  3455


Q ss_pred             HhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHH-hCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCc
Q 022947          109 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAK-CCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR  187 (289)
Q Consensus       109 ~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~-~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~k  187 (289)
                       ++++|||+||+++|.|+++|++|.|++..|+++++++++.|++ ++|++++|++|||+|+|||++    ++.++++|+|
T Consensus       172 -e~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~----~k~sg~~~~r  246 (444)
T PLN00112        172 -EVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALIC----LKNAPNIPAK  246 (444)
T ss_pred             -HHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHH----HHHcCCCCcc
Confidence             8999999999999999999999999999999999999999999 589999999999999999765    6678999999


Q ss_pred             EEEe-eeccHHHHHHHHHHHcCCCCcce-eeeEEcccCCCeeeeecccccCCCC-----CChhh--HHHHHHHHHhhhHH
Q 022947          188 LLGV-TMLDVVRANTFVAEVLGLDPREV-DVPVVGGHAGVTILPLLSQVKPSCS-----LTPTE--IDYLTDRIQNGGTE  258 (289)
Q Consensus       188 viG~-t~lds~R~~~~lA~~l~v~~~~V-~~~V~G~hg~~~~vp~~S~~~v~~~-----~~~~~--~~~i~~~v~~~g~~  258 (289)
                      +||+ |.||++||+++||+++++++++| +++||||||+ +|||+||++++++.     +++.+  +++|.++++++|++
T Consensus       247 ViGtgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHGd-sqvp~wS~a~V~G~pl~e~i~~~~~~~~ei~~~v~~~g~~  325 (444)
T PLN00112        247 NFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST-TQVPDFLNAKINGLPVKEVITDHKWLEEEFTPKVQKRGGV  325 (444)
T ss_pred             eEEeeccHHHHHHHHHHHHHhCcCHHHcccceEEecCCC-ceeeccceeEECCccHHHhhccccchHHHHHHHHHHHHHH
Confidence            9999 89999999999999999999999 5699999998 99999999999651     33333  68999999999999


Q ss_pred             HhhhcCCCCcchH-HHHHHHHHHHHHHh--cCC
Q 022947          259 VVEAKTGAGSATL-SMCRHMLLPSLPML--VSE  288 (289)
Q Consensus       259 i~~~k~g~g~t~~-s~A~a~~~~~~ail--~~~  288 (289)
                      |++.|   |+++| ++|.++++++++|+  +|+
T Consensus       326 Ii~~k---G~t~~~s~a~ai~~~I~ail~~~d~  355 (444)
T PLN00112        326 LIKKW---GRSSAASTAVSIADAIKSLVTPTPE  355 (444)
T ss_pred             HHhcc---CchhHHHHHHHHHHHHHHHHcCCCC
Confidence            99965   55555 99999999999999  876

>cd00704 MDH Malate dehydrogenase

Probab=100.00  E-value=6.8e-51  Score=380.19  Aligned_cols=231  Identities=30%  Similarity=0.418  Sum_probs=203.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcc-----EEEEEeCCC----chhHHhhhhcccC--CceEEEEecCCCHHhhhCCCC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMD  116 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~-----eI~LvD~~~----~~g~~~DL~~~~~--~~~v~~~~~t~d~~eal~~aD  116 (289)
                      ||+||||+|+||+++++.|+.+++++     +|+|+|+++    ++|+++||.|...  .......  +.+ +++++|||
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~--~~~-~~~~~~aD   78 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVIT--TDP-EEAFKDVD   78 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEe--cCh-HHHhCCCC
Confidence            89999999999999999999999888     499999986    6889999999852  2223321  234 58999999


Q ss_pred             EEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCC-CCCCcEEEeeec
Q 022947          117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGT-YDPKRLLGVTML  194 (289)
Q Consensus       117 iVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~-~~~~kviG~t~l  194 (289)
                      +||++||.|+++|++|+|++..|+++++++++.|++++ |+++++++|||+|+|||++    ++.+| +|++||||+|.|
T Consensus        79 iVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~----~k~sg~~p~~~vig~t~L  154 (323)
T cd00704          79 VAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIA----LKNAPNLPPKNFTALTRL  154 (323)
T ss_pred             EEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCHHHEEEeeHH
Confidence            99999999999999999999999999999999999996 9999999999999999764    66778 599999999999


Q ss_pred             cHHHHHHHHHHHcCCCCccee-eeEEcccCCCeeeeecccccCCCC---------CChh-hHHHHHHHHHhhhHHHhhhc
Q 022947          195 DVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPSCS---------LTPT-EIDYLTDRIQNGGTEVVEAK  263 (289)
Q Consensus       195 ds~R~~~~lA~~l~v~~~~V~-~~V~G~hg~~~~vp~~S~~~v~~~---------~~~~-~~~~i~~~v~~~g~~i~~~k  263 (289)
                      ||+|||++||++++++|++|+ ++||||||+ +++|+||++++++.         ++++ ..++|.++++++|++|++.|
T Consensus       155 Ds~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~g~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~Ii~~k  233 (323)
T cd00704         155 DHNRAKAQVARKLGVRVSDVKNVIIWGNHSN-TQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIKKR  233 (323)
T ss_pred             HHHHHHHHHHHHhCcCHHHceeeeEEecccC-ceeeccccceecCccHHHhcccccChHHHHHHHHHHHHhhHHHHHhcc
Confidence            999999999999999999995 689999999 99999999998642         2222 25799999999999999965


Q ss_pred             CCCCcchHH-HHHHHHHHHHHHhcCCC
Q 022947          264 TGAGSATLS-MCRHMLLPSLPMLVSEA  289 (289)
Q Consensus       264 ~g~g~t~~s-~A~a~~~~~~ail~~~~  289 (289)
                         |+|+|+ +|.++++++++|++|+.
T Consensus       234 ---g~t~~~~~a~a~~~iv~ail~~~~  257 (323)
T cd00704         234 ---GASSAASAAKAIADHVKDWLFGTP  257 (323)
T ss_pred             ---CcchhHHHHHHHHHHHHHHHhCCC
Confidence               678886 69999999999999974

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=100.00  E-value=2.1e-50  Score=382.84  Aligned_cols=238  Identities=24%  Similarity=0.283  Sum_probs=206.2

Q ss_pred             cCCCCCCCEEEEEcCCCccHHHHHHHHHhCCCcc-----EEEEE--eCCC--chhHHhhhhcccC--CceEEEEecCCCH
Q 022947           40 AKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLY--DVVN--TPGVTADISHMDT--NAVVRGFLGQQQL  108 (289)
Q Consensus        40 ~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~-----eI~Lv--D~~~--~~g~~~DL~~~~~--~~~v~~~~~t~d~  108 (289)
                      ++.-+++.||+||||+|+||+++|+.|+.+++++     +|+|+  |+++  ++|+++||.|+..  ...+...  +++|
T Consensus        38 ~~~~~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~--~~~y  115 (387)
T TIGR01757        38 TKSWKKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIG--IDPY  115 (387)
T ss_pred             HhcCCCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEe--cCCH
Confidence            3334557899999999999999999999999988     56677  6665  6899999999862  2233322  3454


Q ss_pred             HhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCc
Q 022947          109 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR  187 (289)
Q Consensus       109 ~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~k  187 (289)
                       ++++|||+||++||.|+++|++|+|++..|+++++++++.|++++ |++++|++|||+|+|||++    ++.+++||+|
T Consensus       116 -~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v~----~k~sg~~~~r  190 (387)
T TIGR01757       116 -EVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALIA----MKNAPNIPRK  190 (387)
T ss_pred             -HHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHHH----HHHcCCCccc
Confidence             899999999999999999999999999999999999999999987 9999999999999999765    5677999999


Q ss_pred             EEEe-eeccHHHHHHHHHHHcCCCCccee-eeEEcccCCCeeeeecccccCCC-C----CChhh--HHHHHHHHHhhhHH
Q 022947          188 LLGV-TMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPSC-S----LTPTE--IDYLTDRIQNGGTE  258 (289)
Q Consensus       188 viG~-t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg~~~~vp~~S~~~v~~-~----~~~~~--~~~i~~~v~~~g~~  258 (289)
                      +||+ |.|||+||+++||++|++++++|+ ++||||||+ +|||+||++++++ +    +++.+  +++|.++|+++|++
T Consensus       191 viG~gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeHGd-s~vp~~S~a~V~G~pl~~~~~~~~~~~~ei~~~v~~~g~e  269 (387)
T TIGR01757       191 NFHALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHST-TQVPDFVNAKIGGRPAKEVIKDTKWLEEEFTPTVQKRGGA  269 (387)
T ss_pred             EEEecchhHHHHHHHHHHHHHCcChhHcceeEEEecCCC-cEEecceeeEECCEEhHHhcccccchHHHHHHHHHHHHHH
Confidence            9999 899999999999999999999995 999999998 9999999999864 1    22323  68999999999999


Q ss_pred             HhhhcCCCCcchH-HHHHHHHHHHHHHh--cCC
Q 022947          259 VVEAKTGAGSATL-SMCRHMLLPSLPML--VSE  288 (289)
Q Consensus       259 i~~~k~g~g~t~~-s~A~a~~~~~~ail--~~~  288 (289)
                      |++.|   |+++| ++|.++++++++|+  +|+
T Consensus       270 Ii~~K---G~t~~~s~a~ai~~~i~ai~~g~d~  299 (387)
T TIGR01757       270 LIKKW---GRSSAASTAVSIADAIKSLVVPTPE  299 (387)
T ss_pred             HHhcc---CchhHHHHHHHHHHHHHHHhcCCCC
Confidence            99965   44555 99999999999999  876

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=100.00  E-value=2.9e-50  Score=373.92  Aligned_cols=231  Identities=28%  Similarity=0.409  Sum_probs=206.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccC--CceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~--~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      +||+|||+ |.||+++++.|+..++..+|+|+|+++  +++.++||.|...  .......  ..++ +++++||+||+++
T Consensus         1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~--~~~~-~~l~~aDIVIita   76 (306)
T cd05291           1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIK--AGDY-SDCKDADIVVITA   76 (306)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEE--cCCH-HHhCCCCEEEEcc
Confidence            38999998 999999999999999888999999987  6788999998753  1223332  2455 6799999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHHH
Q 022947          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANT  201 (289)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R~~~  201 (289)
                      |.|+++|++|.|++.+|+++++++++.|++++|+++++++|||+|+||+++    ++.++||++||||+ |.||++|+++
T Consensus        77 g~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d~~~~~~----~~~~g~p~~~v~g~gt~LDs~R~~~  152 (306)
T cd05291          77 GAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVDVITYVV----QKLSGLPKNRVIGTGTSLDTARLRR  152 (306)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHHHHHHH----HHHhCcCHHHEeeccchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999764    56789999999999 7999999999


Q ss_pred             HHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCC----------CCChhhHHHHHHHHHhhhHHHhhhcCCCCcchH
Q 022947          202 FVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----------SLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATL  271 (289)
Q Consensus       202 ~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~----------~~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~~  271 (289)
                      +||+++++++++|+++||||||+ +++|+||++++++          .+.+++++++.++++++|++|++.|   |+|+|
T Consensus       153 ~la~~l~v~~~~v~~~V~G~Hg~-s~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~k---g~t~~  228 (306)
T cd05291         153 ALAEKLNVDPRSVHAYVLGEHGD-SQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIINGK---GATYY  228 (306)
T ss_pred             HHHHHHCCCcccceEEEEecCCC-ceeecceeeEEcCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHHcc---CccHH
Confidence            99999999999999999999998 9999999999864          1234568899999999999999954   78999


Q ss_pred             HHHHHHHHHHHHHhcCCC
Q 022947          272 SMCRHMLLPSLPMLVSEA  289 (289)
Q Consensus       272 s~A~a~~~~~~ail~~~~  289 (289)
                      ++|.|+++++++|++|+.
T Consensus       229 ~~a~a~~~~~~ail~~~~  246 (306)
T cd05291         229 GIATALARIVKAILNDEN  246 (306)
T ss_pred             HHHHHHHHHHHHHHcCCC
Confidence            999999999999999863

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=3.6e-50  Score=373.06  Aligned_cols=231  Identities=31%  Similarity=0.515  Sum_probs=207.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccC----CceEEEEecCCCHHhhhCCCCEEEE
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----NAVVRGFLGQQQLEDALTGMDIVII  120 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~----~~~v~~~~~t~d~~eal~~aDiVIi  120 (289)
                      |||+|||+ |+||+.+|+.++..|+. +|+|+|+++  ..++++|+.|...    ..+++   .++|+ +++++||+||+
T Consensus         2 ~KV~VIGa-G~vG~~iA~~la~~g~~-~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~---~t~d~-~~~~~aDiVIi   75 (305)
T TIGR01763         2 KKISVIGA-GFVGATTAFRLAEKELA-DLVLLDVVEGIPQGKALDMYEASPVGGFDTKVT---GTNNY-ADTANSDIVVI   75 (305)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHcCCC-eEEEEeCCCChhHHHHHhhhhhhhccCCCcEEE---ecCCH-HHhCCCCEEEE
Confidence            69999998 99999999999999887 899999987  5677888887642    12333   35677 55999999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEee-eccHHHH
Q 022947          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRA  199 (289)
Q Consensus       121 tag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t-~lds~R~  199 (289)
                      |+|.|+++|++|+|++..|.+++++++++|.+++|++++|++|||+|+||+++    ++.+|+|++||||+| .|||+|+
T Consensus        76 tag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~----~~~sg~~~~rviG~g~~lds~R~  151 (305)
T TIGR01763        76 TAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVA----WQKSGFPKERVIGQAGVLDSARF  151 (305)
T ss_pred             cCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHHCcCHHHEEEeccchHHHHH
Confidence            99999999999999999999999999999999999999999999999999765    667899999999995 8999999


Q ss_pred             HHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCCC-----CChhhHHHHHHHHHhhhHHHhhhcCCCCcchHHHH
Q 022947          200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS-----LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMC  274 (289)
Q Consensus       200 ~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~-----~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~~s~A  274 (289)
                      +++||++|++++++|+++||||||+ ++||+||++++++.     ++++++++|.++++++|++|+++| |||+|+|++|
T Consensus       152 ~~~la~~l~v~~~~v~~~v~GeHg~-s~~~~wS~~~i~g~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~-~kg~t~~~~a  229 (305)
T TIGR01763       152 RTFIAMELGVSVQDVTACVLGGHGD-AMVPLVRYSTVAGIPVADLISAERIAEIVERTRKGGGEIVNLL-KQGSAYYAPA  229 (305)
T ss_pred             HHHHHHHhCcCHHHeeeeEEecCCC-cEEeeeeeeEECCEEHHHhcCHHHHHHHHHHHHHHHHHHHHhc-CCCChHHHHH
Confidence            9999999999999999999999998 99999999998651     445558999999999999999987 7899999999


Q ss_pred             HHHHHHHHHHhcCCC
Q 022947          275 RHMLLPSLPMLVSEA  289 (289)
Q Consensus       275 ~a~~~~~~ail~~~~  289 (289)
                      .++++|+++|++|+.
T Consensus       230 ~~~~~i~~ai~~~~~  244 (305)
T TIGR01763       230 ASVVEMVEAILKDRK  244 (305)
T ss_pred             HHHHHHHHHHhCCCC
Confidence            999999999999973

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=100.00  E-value=3.6e-50  Score=375.21  Aligned_cols=233  Identities=22%  Similarity=0.330  Sum_probs=207.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCcc-----EEEEEeCCC----chhHHhhhhcccC--CceEEEEecCCCHHhhhC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT--NAVVRGFLGQQQLEDALT  113 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~-----eI~LvD~~~----~~g~~~DL~~~~~--~~~v~~~~~t~d~~eal~  113 (289)
                      +++||+||||+|+||+++++.|+..++++     ||+|+|+++    ++|+++||.|+..  ...+...  +++ +++++
T Consensus         1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~~   77 (322)
T cd01338           1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT--DDP-NVAFK   77 (322)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe--cCc-HHHhC
Confidence            46799999988999999999999999999     999999954    6899999999862  1234432  345 48999


Q ss_pred             CCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhC-CCCCCcEEEe
Q 022947          114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVG-TYDPKRLLGV  191 (289)
Q Consensus       114 ~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~-~~~~~kviG~  191 (289)
                      |||+||+|||.|+++|++|+|++..|++++++++++|++++ |++++|++|||+|+|||++    ++.+ ++|++||||+
T Consensus        78 daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~----~k~sg~~p~~~ViG~  153 (322)
T cd01338          78 DADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIA----MKNAPDIPPDNFTAM  153 (322)
T ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHH----HHHcCCCChHheEEe
Confidence            99999999999999999999999999999999999999999 5999999999999999875    5567 5999999999


Q ss_pred             eeccHHHHHHHHHHHcCCCCcceee-eEEcccCCCeeeeecccccCCC-C----CChhh--HHHHHHHHHhhhHHHhhhc
Q 022947          192 TMLDVVRANTFVAEVLGLDPREVDV-PVVGGHAGVTILPLLSQVKPSC-S----LTPTE--IDYLTDRIQNGGTEVVEAK  263 (289)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~V~~-~V~G~hg~~~~vp~~S~~~v~~-~----~~~~~--~~~i~~~v~~~g~~i~~~k  263 (289)
                      |.||++||++++|+++|+++++|++ +||||||+ +++|+||++++.+ +    +++.+  +++|.++++++|++|++.|
T Consensus       154 t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG~-s~vp~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k  232 (322)
T cd01338         154 TRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHSP-TQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKAR  232 (322)
T ss_pred             hHHHHHHHHHHHHHHhCcChhHeEEEEEEeCCcc-cEEEehhhcEECCEeHHHhcChHhhHHHHHHHHHHhhHHHHHhCc
Confidence            9999999999999999999999998 56999998 9999999998864 1    34433  6799999999999999964


Q ss_pred             CCCCcchHHHH-HHHHHHHHHHhcCC
Q 022947          264 TGAGSATLSMC-RHMLLPSLPMLVSE  288 (289)
Q Consensus       264 ~g~g~t~~s~A-~a~~~~~~ail~~~  288 (289)
                         |+++|++| .++++++++|++|+
T Consensus       233 ---G~t~~~~~a~a~~~iv~ail~~~  255 (322)
T cd01338         233 ---GASSAASAANAAIDHMRDWVLGT  255 (322)
T ss_pred             ---CCccHHHHHHHHHHHHHHHhcCC
Confidence               78999999 59999999999997

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=100.00  E-value=1.6e-49  Score=370.88  Aligned_cols=235  Identities=32%  Similarity=0.590  Sum_probs=209.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccC--CceEEEEecCCCHHhhhCCCCEEEE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVII  120 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~--~~~v~~~~~t~d~~eal~~aDiVIi  120 (289)
                      +.+||+|||| |.||+++++.++..++ .+|+|+|+++  +.++++|+.|...  ....+.. .++|+ ++++|||+||+
T Consensus         5 ~~~KI~IIGa-G~vG~~ia~~la~~gl-~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~-~~~d~-~~l~~aDiVI~   80 (321)
T PTZ00082          5 KRRKISLIGS-GNIGGVMAYLIVLKNL-GDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVI-GTNNY-EDIAGSDVVIV   80 (321)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEE-ECCCH-HHhCCCCEEEE
Confidence            3469999998 9999999999999997 4699999988  5778999999742  1222322 34677 78999999999


Q ss_pred             cCCCCCCCCC-----chhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEee-ec
Q 022947          121 PAGVPRKPGM-----TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-ML  194 (289)
Q Consensus       121 tag~~~~~g~-----~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t-~l  194 (289)
                      ++|.++++|+     +|.+++..|+++++++++.|+++||++++|++|||+|++|+.+    ++.+++|++||||+| .|
T Consensus        81 tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~----~~~sg~p~~rviGlgt~l  156 (321)
T PTZ00082         81 TAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLL----QEHSGLPKNKVCGMAGVL  156 (321)
T ss_pred             CCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHhcCCChhhEEEecCcc
Confidence            9999999999     9999999999999999999999999999999999999999654    677899999999996 89


Q ss_pred             cHHHHHHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCC----------CCChhhHHHHHHHHHhhhHHHhhhcC
Q 022947          195 DVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----------SLTPTEIDYLTDRIQNGGTEVVEAKT  264 (289)
Q Consensus       195 ds~R~~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~----------~~~~~~~~~i~~~v~~~g~~i~~~k~  264 (289)
                      |++|++++||+++++++++|+++|+||||+ ++||+||++++++          .++++++++|.++++++|++|+++| 
T Consensus       157 ds~R~~~~la~~l~v~~~~v~~~viGeHg~-s~v~~~S~~~i~g~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~~-  234 (321)
T PTZ00082        157 DSSRLRTYIAEKLGVNPRDVHASVIGAHGD-KMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIVDLL-  234 (321)
T ss_pred             cHHHHHHHHHHHhCCCcccceeeEEecCCC-ceEecceeeEECCEEHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhhc-
Confidence            999999999999999999999999999998 9999999999854          1455668999999999999999987 


Q ss_pred             CCCcchHHHHHHHHHHHHHHhcCCC
Q 022947          265 GAGSATLSMCRHMLLPSLPMLVSEA  289 (289)
Q Consensus       265 g~g~t~~s~A~a~~~~~~ail~~~~  289 (289)
                      |||+|+||+|.++++++++|++|+.
T Consensus       235 gkg~t~~~ia~a~~~i~~ail~d~~  259 (321)
T PTZ00082        235 GTGSAYFAPAAAAIEMAEAYLKDKK  259 (321)
T ss_pred             CCCccHHHHHHHHHHHHHHHHcCCC
Confidence            7899999999999999999999974

>PTZ00117 malate dehydrogenase; Provisional

Probab=100.00  E-value=1.9e-49  Score=370.41  Aligned_cols=235  Identities=31%  Similarity=0.517  Sum_probs=210.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCc--eEEEEecCCCHHhhhCCCCEEEE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNA--VVRGFLGQQQLEDALTGMDIVII  120 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~--~v~~~~~t~d~~eal~~aDiVIi  120 (289)
                      +.+||+|||| |+||+++++.++..++ .+|+|+|+++  +.++++|+.|.....  .... ..++|+ ++++|||+||+
T Consensus         4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~-~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i-~~~~d~-~~l~~ADiVVi   79 (319)
T PTZ00117          4 KRKKISMIGA-GQIGSTVALLILQKNL-GDVVLYDVIKGVPQGKALDLKHFSTLVGSNINI-LGTNNY-EDIKDSDVVVI   79 (319)
T ss_pred             CCcEEEEECC-CHHHHHHHHHHHHCCC-CeEEEEECCCccchhHHHHHhhhccccCCCeEE-EeCCCH-HHhCCCCEEEE
Confidence            4569999998 9999999999999987 5899999988  578899999975321  2232 234677 59999999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEee-eccHHHH
Q 022947          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRA  199 (289)
Q Consensus       121 tag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t-~lds~R~  199 (289)
                      ++|.++++|++|.|++..|.++++++++.|+++||++|++++|||+|++|+++    ++.+++|++||+|+| .||++|+
T Consensus        80 tag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~----~~~s~~p~~rviG~gt~lds~R~  155 (319)
T PTZ00117         80 TAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVF----QEKSGIPSNKICGMAGVLDSSRF  155 (319)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHH----HHhhCCCcccEEEecchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999654    667899999999996 8999999


Q ss_pred             HHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCC----------CCChhhHHHHHHHHHhhhHHHhhhcCCCCcc
Q 022947          200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----------SLTPTEIDYLTDRIQNGGTEVVEAKTGAGSA  269 (289)
Q Consensus       200 ~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~----------~~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t  269 (289)
                      +++||++++++|++|+++|+||||+ ++||+||++++++          .+++++++++.++++++|++|++++ |||++
T Consensus       156 ~~~la~~l~v~~~~v~~~viGeHg~-~~v~~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~~-~kg~t  233 (319)
T PTZ00117        156 RCNLAEKLGVSPGDVSAVVIGGHGD-LMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKLL-KKGSA  233 (319)
T ss_pred             HHHHHHHhCCCcccceEEEeecCCC-cEEeceeeceECCEEHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhc-CCCCh
Confidence            9999999999999999999999998 9999999998854          1455668899999999999999986 78999


Q ss_pred             hHHHHHHHHHHHHHHhcCCC
Q 022947          270 TLSMCRHMLLPSLPMLVSEA  289 (289)
Q Consensus       270 ~~s~A~a~~~~~~ail~~~~  289 (289)
                      +||+|.++++++++|++|+.
T Consensus       234 ~~~~a~a~~~~~~ail~~~~  253 (319)
T PTZ00117        234 FFAPAAAIVAMIEAYLKDEK  253 (319)
T ss_pred             HHHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999873

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=100.00  E-value=1.4e-49  Score=368.30  Aligned_cols=230  Identities=30%  Similarity=0.461  Sum_probs=206.3

Q ss_pred             EEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCC-ceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN-AVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~-~~v~~~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      |+|||+ |.||+++++.|+..+++.||+|+|+++  +.++++||.|.... ...+... ++|+ +++++||+||+++|.|
T Consensus         1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~-~~~~-~~l~~aDiVIitag~p   77 (300)
T cd00300           1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVR-GGDY-ADAADADIVVITAGAP   77 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEE-CCCH-HHhCCCCEEEEcCCCC
Confidence            689998 999999999999999999999999988  68999999998642 2223322 3465 7999999999999999


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHHHHHH
Q 022947          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVA  204 (289)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R~~~~lA  204 (289)
                      +++|++|.+++.+|+++++++++.|+++||+++++++|||+|+||+++    ++.+++|++||||+ |.||++|+++++|
T Consensus        78 ~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d~~~~~~----~~~sg~~~~kviG~gt~lDs~r~~~~la  153 (300)
T cd00300          78 RKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVDILTYVA----QKLSGLPKNRVIGSGTLLDSARFRSLLA  153 (300)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHHHHHHHH----HHHhCcCHHHEEecCCcHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999754    66789999999999 6999999999999


Q ss_pred             HHcCCCCcceeeeEEcccCCCeeeeecccccCCC-C----C--ChhhHHHHHHHHHhhhHHHhhhcCCCCcchHHHHHHH
Q 022947          205 EVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S----L--TPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMCRHM  277 (289)
Q Consensus       205 ~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~-~----~--~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~~s~A~a~  277 (289)
                      +++++++++|+++|+||||+ ++||+||++++++ +    +  ++.++++|.+++++++++|++.|   |+++|++|.++
T Consensus       154 ~~l~v~~~~v~~~viGeHg~-s~v~~~S~~~v~g~p~~~~~~~~~~~~~~l~~~v~~~~~~ii~~k---g~t~~~~a~a~  229 (300)
T cd00300         154 EKLDVDPQSVHAYVLGEHGD-SQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIRLK---GATNYGIATAI  229 (300)
T ss_pred             HHhCCCcccEEEEEEeccCC-ceeeeeeeeEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHcc---CcchHHHHHHH
Confidence            99999999999999999998 8999999999864 1    1  23457899999999999999954   78999999999


Q ss_pred             HHHHHHHhcCCC
Q 022947          278 LLPSLPMLVSEA  289 (289)
Q Consensus       278 ~~~~~ail~~~~  289 (289)
                      ++++++|++|+.
T Consensus       230 ~~~~~ai~~~~~  241 (300)
T cd00300         230 ADIVKSILLDER  241 (300)
T ss_pred             HHHHHHHHcCCC
Confidence            999999999863

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=9.3e-49  Score=365.98  Aligned_cols=233  Identities=25%  Similarity=0.358  Sum_probs=202.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcc-----EEEEEeCCC----chhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEE
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIV  118 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~-----eI~LvD~~~----~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiV  118 (289)
                      ||+||||+|.||+++++.|+.+++++     +|+|+|+++    ++++++||.|+..... ..+..+++.+++++|||+|
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~-~~~~~~~~~~~~~~~aDiV   79 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLL-DGVVPTHDPAVAFTDVDVA   79 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhc-CceeccCChHHHhCCCCEE
Confidence            69999999999999999999988875     799999955    5789999999873111 1112233435899999999


Q ss_pred             EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccH
Q 022947          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDV  196 (289)
Q Consensus       119 Iitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds  196 (289)
                      |++||.|+++|++|.+++..|+++++++++.|++++ |+++++++|||+|+|||++    ++.++++|+++||+ |.|||
T Consensus        80 VitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~----~~~sg~~~~~vig~gt~LDs  155 (324)
T TIGR01758        80 ILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVL----SNYAPSIPPKNFSALTRLDH  155 (324)
T ss_pred             EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCcceEEEeeehHH
Confidence            999999999999999999999999999999999996 9999999999999999765    56677788889999 89999


Q ss_pred             HHHHHHHHHHcCCCCccee-eeEEcccCCCeeeeecccccCC-C----C----CChhh--HHHHHHHHHhhhHHHhhhcC
Q 022947          197 VRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPS-C----S----LTPTE--IDYLTDRIQNGGTEVVEAKT  264 (289)
Q Consensus       197 ~R~~~~lA~~l~v~~~~V~-~~V~G~hg~~~~vp~~S~~~v~-~----~----~~~~~--~~~i~~~v~~~g~~i~~~k~  264 (289)
                      +|||++||++++++|++|+ ++||||||+ ++||+||+++++ +    +    +++++  +++|.++++++|++|+++| 
T Consensus       156 ~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~~g~~~~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k-  233 (324)
T TIGR01758       156 NRALAQVAERAGVPVSDVKNVIIWGNHSS-TQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRAR-  233 (324)
T ss_pred             HHHHHHHHHHhCCChhhceEeEEEECCCC-CcccccccceecCCCCccCHHHHhcchhhHHHHHHHHHHhCHHHHHhcc-
Confidence            9999999999999999996 699999999 999999999997 5    1    22222  5799999999999999975 


Q ss_pred             CCCcchHHHHHHHHHHHHHHh--cCC
Q 022947          265 GAGSATLSMCRHMLLPSLPML--VSE  288 (289)
Q Consensus       265 g~g~t~~s~A~a~~~~~~ail--~~~  288 (289)
                       +++++|++|.++++++++|+  .|+
T Consensus       234 -~~~t~~~ia~~~~~i~~ai~~~~~~  258 (324)
T TIGR01758       234 -KLSSALSAAKAAVDQMHDWVLGTPE  258 (324)
T ss_pred             -CCCHHHHHHHHHHHHHHHHhcCCCC
Confidence             35899999999999999999  665

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=1.9e-48  Score=362.13  Aligned_cols=231  Identities=29%  Similarity=0.452  Sum_probs=207.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccC-CceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~-~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      |||+|||+ |.||+++++.|+..|+..+|+|+|+++  ..++++|+.|... .......  ++|+ +++++||+||+++|
T Consensus         1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~--~~d~-~~l~~aDiViita~   76 (308)
T cd05292           1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIY--AGDY-ADCKGADVVVITAG   76 (308)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEe--eCCH-HHhCCCCEEEEccC
Confidence            59999998 999999999999999888999999987  5789999998753 1223333  3466 78999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHHHH
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTF  202 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R~~~~  202 (289)
                      .+++++++|.+++..|+++++++++.|++++|+++++++|||+|+||+++    ++.+|||++||||+ |.|||+|++++
T Consensus        77 ~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d~~~~~~----~~~sg~p~~~viG~gt~LDs~R~~~~  152 (308)
T cd05292          77 ANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVDVLTYVA----YKLSGLPPNRVIGSGTVLDTARFRYL  152 (308)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHHCcCHHHeecccchhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999765    56679999999999 89999999999


Q ss_pred             HHHHcCCCCcceeeeEEcccCCCeeeeecccccCCC------------CCChhhHHHHHHHHHhhhHHHhhhcCCCCcch
Q 022947          203 VAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC------------SLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT  270 (289)
Q Consensus       203 lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~------------~~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~  270 (289)
                      ||+++++++++|+++||||||+ ++||+||++++++            .++++++++|.++++++|++|++.|   |+|+
T Consensus       153 la~~~~v~~~~v~~~viGeHg~-~~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~k---g~t~  228 (308)
T cd05292         153 LGEHLGVDPRSVHAYIIGEHGD-SEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIERK---GATY  228 (308)
T ss_pred             HHHHhCCCccceeceeeccCCC-cEEecceeeeECCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHHcC---CccH
Confidence            9999999999999999999998 9999999998854            1233558899999999999999965   7899


Q ss_pred             HHHHHHHHHHHHHHhcCCC
Q 022947          271 LSMCRHMLLPSLPMLVSEA  289 (289)
Q Consensus       271 ~s~A~a~~~~~~ail~~~~  289 (289)
                      |++|.++++++++|++|+.
T Consensus       229 ~~~a~a~~~i~~ail~~~~  247 (308)
T cd05292         229 YAIGLALARIVEAILRDEN  247 (308)
T ss_pred             HHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999973

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=100.00  E-value=3.2e-47  Score=353.91  Aligned_cols=233  Identities=27%  Similarity=0.428  Sum_probs=206.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC----chhHHhhhhcccCC--ceEEEEecCCCHHhhhCCCCEEEE
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIVII  120 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~----~~g~~~DL~~~~~~--~~v~~~~~t~d~~eal~~aDiVIi  120 (289)
                      |||+|+|++|+||++++..|+..|+..+|+|+|+++    +.+..+|+.|....  ...+. ..++|+ +++++||+||+
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i-~~~~d~-~~l~~aDiVii   78 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEI-KISSDL-SDVAGSDIVII   78 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEE-EECCCH-HHhCCCCEEEE
Confidence            699999988999999999999999988999999954    57888999986421  12222 224565 67999999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHH
Q 022947          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRA  199 (289)
Q Consensus       121 tag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R~  199 (289)
                      ++|.|+++|++|.+++..|+++++++++.|++++|++++++++||+|++|+++    ++.+++|++||||+ |.||++|+
T Consensus        79 tag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~t~~~----~~~~g~~~~~viG~gt~LDs~R~  154 (309)
T cd05294          79 TAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMTYKA----LKESGFDKNRVFGLGTHLDSLRF  154 (309)
T ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH----HHhcCCCHHHEeeccchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999764    56788999999999 68999999


Q ss_pred             HHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCC-C----C--ChhhHHHHHHHHHhhhHHHhhhcCCCCcchHH
Q 022947          200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S----L--TPTEIDYLTDRIQNGGTEVVEAKTGAGSATLS  272 (289)
Q Consensus       200 ~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~-~----~--~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~~s  272 (289)
                      +++||+++++++++|+++|+||||+ +|||+||++++++ +    +  .+.++++|.++++++|++|++.|   |+++||
T Consensus       155 ~~~la~~l~v~~~~v~~~viGeHg~-s~~~~~S~~~i~g~~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~k---g~t~~~  230 (309)
T cd05294         155 KVAIAKHFNVHISEVHTRIIGEHGD-SMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISLK---GGSEYG  230 (309)
T ss_pred             HHHHHHHHCcChHHeEEEEEecCCC-ceEeeeeecEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHhc---CCchhh
Confidence            9999999999999999999999998 9999999999864 1    2  24457899999999999999976   568899


Q ss_pred             HHHHHHHHHHHHhcCCC
Q 022947          273 MCRHMLLPSLPMLVSEA  289 (289)
Q Consensus       273 ~A~a~~~~~~ail~~~~  289 (289)
                      +|.++++++++|++|+.
T Consensus       231 ~a~~~~~ii~ail~~~~  247 (309)
T cd05294         231 PASAISNLVRTIANDER  247 (309)
T ss_pred             HHHHHHHHHHHHHCCCC
Confidence            99999999999999974

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=100.00  E-value=1.5e-47  Score=358.12  Aligned_cols=233  Identities=25%  Similarity=0.342  Sum_probs=202.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCcc-----EEEEEeCCC----chhHHhhhhcccC--CceEEEEecCCCHHhhhC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT--NAVVRGFLGQQQLEDALT  113 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~-----eI~LvD~~~----~~g~~~DL~~~~~--~~~v~~~~~t~d~~eal~  113 (289)
                      ++.||+||||+|+||+++++.|+..++++     ||+|+|+++    +.++++|+.|+..  ...+..   +.+++++++
T Consensus         1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~---~~~~~~~l~   77 (325)
T cd01336           1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVA---TTDPEEAFK   77 (325)
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCcee---cCCHHHHhC
Confidence            36799999999999999999999988764     999999965    5788899999752  223332   346679999


Q ss_pred             CCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHh-CCCCCCcEEEe
Q 022947          114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKV-GTYDPKRLLGV  191 (289)
Q Consensus       114 ~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~-~~~~~~kviG~  191 (289)
                      |||+||++||.+++++++|.+++..|+++++++++.|++++ |+++++++|||+|+|||++    ++. +++|+++ ||+
T Consensus        78 ~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~----~k~~~~~~~~~-ig~  152 (325)
T cd01336          78 DVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALIL----LKYAPSIPKEN-FTA  152 (325)
T ss_pred             CCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHHH----HHHcCCCCHHH-EEe
Confidence            99999999999999999999999999999999999999997 8999999999999999875    455 5788777 777


Q ss_pred             -eeccHHHHHHHHHHHcCCCCccee-eeEEcccCCCeeeeecccccCC----CC-----CChhh--HHHHHHHHHhhhHH
Q 022947          192 -TMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPS----CS-----LTPTE--IDYLTDRIQNGGTE  258 (289)
Q Consensus       192 -t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg~~~~vp~~S~~~v~----~~-----~~~~~--~~~i~~~v~~~g~~  258 (289)
                       |.||++||++++|++|++++++|+ .+||||||+ +|||+||+++++    +.     +++++  +++|.++++++|++
T Consensus       153 gt~LDs~R~r~~la~~l~v~~~~v~~~~V~GeHG~-s~~~~~S~~~v~~~~~g~~~~~~~~~~~~~~~~i~~~v~~~g~~  231 (325)
T cd01336         153 LTRLDHNRAKSQIALKLGVPVSDVKNVIIWGNHSS-TQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAA  231 (325)
T ss_pred             eehHHHHHHHHHHHHHhCcChhhceEeEEEEcCCC-CeeeccccceeecCCCCccHHHHhcccchhHHHHHHHHHhhHHH
Confidence             899999999999999999999997 559999999 999999999986    41     23322  58999999999999


Q ss_pred             HhhhcCCCCcchHHHHHHHHHHHHHHhcCC
Q 022947          259 VVEAKTGAGSATLSMCRHMLLPSLPMLVSE  288 (289)
Q Consensus       259 i~~~k~g~g~t~~s~A~a~~~~~~ail~~~  288 (289)
                      |+++|  +|+|+||+|.++++++++|++|+
T Consensus       232 Ii~~~--~g~t~~~~a~~~~~i~~ail~~~  259 (325)
T cd01336         232 VIKAR--KLSSAMSAAKAICDHVHDWWFGT  259 (325)
T ss_pred             HHHcc--ccchHHHHHHHHHHHHHHHHcCC
Confidence            99974  47899999999999999999984

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=100.00  E-value=1.1e-46  Score=348.81  Aligned_cols=231  Identities=35%  Similarity=0.584  Sum_probs=205.7

Q ss_pred             EEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccC--CceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~--~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      |+|||| |+||+++++.++..++. +|+|+|+++  +.+.++|+.+...  ....+.. .++|+ +++++||+||+++|.
T Consensus         1 I~IIGa-G~vG~~ia~~la~~~l~-eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~-~t~d~-~~l~dADiVIit~g~   76 (300)
T cd01339           1 ISIIGA-GNVGATLAQLLALKELG-DVVLLDIVEGLPQGKALDISQAAPILGSDTKVT-GTNDY-EDIAGSDVVVITAGI   76 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhCCCc-EEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEE-EcCCH-HHhCCCCEEEEecCC
Confidence            689999 99999999999999987 999999988  5677788888642  1122322 24566 679999999999999


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEee-eccHHHHHHHH
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFV  203 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t-~lds~R~~~~l  203 (289)
                      |+++|++|.+++..|++++++++++|++++|+++++++|||+|++|+++    ++.+++||+||||+| .||++|++++|
T Consensus        77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~----~~~s~~~~~rviGlgt~lds~r~~~~l  152 (300)
T cd01339          77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVA----YKASGFPRNRVIGMAGVLDSARFRYFI  152 (300)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHhCCCHHHEEEecchHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999765    567899999999996 89999999999


Q ss_pred             HHHcCCCCcceeeeEEcccCCCeeeeecccccCCC-C----CChhhHHHHHHHHHhhhHHHhhhcCCCCcchHHHHHHHH
Q 022947          204 AEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S----LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMCRHML  278 (289)
Q Consensus       204 A~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~-~----~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~~s~A~a~~  278 (289)
                      |++|++++++|+++|+||||+ +++|+||++++++ +    ++++++++|.+++++++++|++.| |+|+|+|++|.+++
T Consensus       153 a~~l~v~~~~v~~~v~G~hg~-~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~~~~ii~~k-~~g~t~~~~a~~~~  230 (300)
T cd01339         153 AEELGVSVKDVQAMVLGGHGD-TMVPLPRYSTVGGIPLTELITKEEIDEIVERTRNGGAEIVNLL-KTGSAYYAPAAAIA  230 (300)
T ss_pred             HHHhCCCccceEEEEEeCCCC-cceecceecEECCEEHHHhcChHHHHHHHHHHHHHHHHHHhhc-CCCchhHHHHHHHH
Confidence            999999999999999999998 8999999999864 1    455568999999999999999988 78999999999999


Q ss_pred             HHHHHHhcCCC
Q 022947          279 LPSLPMLVSEA  289 (289)
Q Consensus       279 ~~~~ail~~~~  289 (289)
                      +|+++|++|+.
T Consensus       231 ~i~~ail~~~~  241 (300)
T cd01339         231 EMVEAILKDKK  241 (300)
T ss_pred             HHHHHHHcCCC
Confidence            99999999863

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK06223 malate dehydrogenase; Reviewed

Probab=100.00  E-value=2.4e-46  Score=347.27  Aligned_cols=234  Identities=34%  Similarity=0.574  Sum_probs=207.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCC--ceEEEEecCCCHHhhhCCCCEEEEc
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIVIIP  121 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~--~~v~~~~~t~d~~eal~~aDiVIit  121 (289)
                      ++||+|||+ |+||+++++.++..++. ||+|+|+++  .++.++|+.+....  ...+. ..++|+ +++++||+||++
T Consensus         2 ~~KI~VIGa-G~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i-~~~~d~-~~~~~aDiVii~   77 (307)
T PRK06223          2 RKKISIIGA-GNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKI-TGTNDY-EDIAGSDVVVIT   77 (307)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEE-EeCCCH-HHHCCCCEEEEC
Confidence            479999999 99999999999999877 999999988  57888888886421  11222 234577 789999999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEee-eccHHHHH
Q 022947          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRAN  200 (289)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t-~lds~R~~  200 (289)
                      +|.|+++|++|.+++.+|+++++++++.|++++|+++++++|||+|++|+++    ++.+++||+||||+| .||++|++
T Consensus        78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~----~~~s~~~~~~viG~gt~lds~r~~  153 (307)
T PRK06223         78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVA----LKESGFPKNRVIGMAGVLDSARFR  153 (307)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHhCCCcccEEEeCCCcHHHHHH
Confidence            9999999999999999999999999999999999999999999999999765    567899999999995 99999999


Q ss_pred             HHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCC-C----CChhhHHHHHHHHHhhhHHHhhhcCCCCcchHHHHH
Q 022947          201 TFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S----LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMCR  275 (289)
Q Consensus       201 ~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~-~----~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~~s~A~  275 (289)
                      ++||+++++++++|+++|+||||+ +++|+||++++.+ +    ++++.+++|.+++++++++|++.+ +|+++.|++|.
T Consensus       154 ~~la~~l~v~~~~v~~~viGehg~-s~~p~~S~~~v~g~~~~~~~~~~~~~~l~~~v~~~~~~ii~~~-~kg~t~~~~A~  231 (307)
T PRK06223        154 TFIAEELNVSVKDVTAFVLGGHGD-SMVPLVRYSTVGGIPLEDLLSKEKLDEIVERTRKGGAEIVGLL-KTGSAYYAPAA  231 (307)
T ss_pred             HHHHHHhCcChhhCcccEEcCCCC-cceEchhhCEECCEEHHHhCChHHHHHHHHHHHHHHHHHHhhc-ccCChhHHHHH
Confidence            999999999999999999999998 9999999998853 1    455567999999999999999974 56889999999


Q ss_pred             HHHHHHHHHhcCCC
Q 022947          276 HMLLPSLPMLVSEA  289 (289)
Q Consensus       276 a~~~~~~ail~~~~  289 (289)
                      ++++++++|+.|+.
T Consensus       232 ~~~~ii~ail~~~~  245 (307)
T PRK06223        232 SIAEMVEAILKDKK  245 (307)
T ss_pred             HHHHHHHHHHcCCC
Confidence            99999999999863

>cd05295 MDH_like Malate dehydrogenase-like

Probab=100.00  E-value=1.1e-45  Score=355.50  Aligned_cols=232  Identities=14%  Similarity=0.118  Sum_probs=199.9

Q ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhCCCc-----cEEEEEeCC--C--chhHHhhhhcccC--CceEEEEecCCCHHhh
Q 022947           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLV-----SVLHLYDVV--N--TPGVTADISHMDT--NAVVRGFLGQQQLEDA  111 (289)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~g~~-----~eI~LvD~~--~--~~g~~~DL~~~~~--~~~v~~~~~t~d~~ea  111 (289)
                      -.++.+|+|+||+|++|+++.+.++...++     -.|+|+|+.  +  ++|+++||.|+..  ...+...  +++ +++
T Consensus       120 ~~~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~--~~~-~ea  196 (452)
T cd05295         120 KINPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVT--TDL-DVA  196 (452)
T ss_pred             CCCceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEE--ECC-HHH
Confidence            345679999999999999999999986443     369999994  3  6899999999862  1234433  234 599


Q ss_pred             hCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC--CcEEEEecCCCcccHHHHHHHHHHhC-CCCCCcE
Q 022947          112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP--KAIVNLISNPVNSTVPIAAEVFKKVG-TYDPKRL  188 (289)
Q Consensus       112 l~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p--~aiviv~tNPvd~~t~~~~~~~~~~~-~~~~~kv  188 (289)
                      ++|||+||+++|.|+++|++|.|++..|.++++++++.|++++|  +++++++|||+|+||+++    ++.+ ++|++||
T Consensus       197 ~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i~----~k~apgiP~~rV  272 (452)
T cd05295         197 FKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSIL----IKYAPSIPRKNI  272 (452)
T ss_pred             hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCHHHE
Confidence            99999999999999999999999999999999999999999999  999999999999999875    4455 9999999


Q ss_pred             EEeeeccHHHHHHHHHHHcCCCCcce-eeeEEcccCCCeeeeecccccCCC-------------C----CChhh--HHHH
Q 022947          189 LGVTMLDVVRANTFVAEVLGLDPREV-DVPVVGGHAGVTILPLLSQVKPSC-------------S----LTPTE--IDYL  248 (289)
Q Consensus       189 iG~t~lds~R~~~~lA~~l~v~~~~V-~~~V~G~hg~~~~vp~~S~~~v~~-------------~----~~~~~--~~~i  248 (289)
                      +|++.||++|++++||+++|+++++| +++||||||+ +|||+||++++++             +    +++.+  .+++
T Consensus       273 ig~gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeHG~-sqvpd~S~a~V~G~~~a~~~p~~~~~pl~e~i~d~~w~~~~~  351 (452)
T cd05295         273 IAVARLQENRAKALLARKLNVNSAGIKDVIVWGNIGG-NTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKWINGEF  351 (452)
T ss_pred             EEecchHHHHHHHHHHHHhCcCHHHceeeEEEEccCC-ceeeeeeEEEEcccccccccccccCccHHHHhcchhhhHHHH
Confidence            99987889999999999999999999 5799999998 9999999999854             1    23333  3678


Q ss_pred             HHHHHhhhHHHhhhcCCCCcchHHHHHHHHHHHHHHhcCC
Q 022947          249 TDRIQNGGTEVVEAKTGAGSATLSMCRHMLLPSLPMLVSE  288 (289)
Q Consensus       249 ~~~v~~~g~~i~~~k~g~g~t~~s~A~a~~~~~~ail~~~  288 (289)
                      .+.++++++   +   +|++|+||+|.|+++++++|++|+
T Consensus       352 ~~~v~~rg~---~---rkgsT~~siA~A~~~iv~ail~~t  385 (452)
T cd05295         352 VATLKSLSS---S---LNHEAAISPAHAIATTLSYWYHGS  385 (452)
T ss_pred             HHHHHHHHH---h---ccCChHHHHHHHHHHHHHHHHhCC
Confidence            889999998   3   468999999999999999999996

These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN00135 malate dehydrogenase

Probab=100.00  E-value=4e-45  Score=338.90  Aligned_cols=204  Identities=24%  Similarity=0.356  Sum_probs=180.4

Q ss_pred             EEEEEeCCC----chhHHhhhhcccC-C-ceEEEEecCCCHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHH
Q 022947           74 VLHLYDVVN----TPGVTADISHMDT-N-AVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLC  147 (289)
Q Consensus        74 eI~LvD~~~----~~g~~~DL~~~~~-~-~~v~~~~~t~d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~  147 (289)
                      .++|+|+++    ++|+++||.|+.. . ..+..   +++.+++++|||+||+|||.|+++|++|.|++..|++++++++
T Consensus        15 ~l~L~D~~~~~~~a~g~~~Dl~da~~~~~~~i~~---~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~   91 (309)
T PLN00135         15 ILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVA---TTDVVEACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQA   91 (309)
T ss_pred             EEEEecCcccccchhhHHHHHHhhhHHhcCCcEe---cCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence            899999976    5899999999862 2 23321   3453589999999999999999999999999999999999999


Q ss_pred             HHHHHh-CCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHHHHHHHHcCCCCcce-eeeEEcccCC
Q 022947          148 EGIAKC-CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREV-DVPVVGGHAG  224 (289)
Q Consensus       148 ~~i~~~-~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R~~~~lA~~l~v~~~~V-~~~V~G~hg~  224 (289)
                      +.|+++ +|+++++++|||+|+|||++    ++.+++|++|+||+ |.|||+||+++||+++++++++| +++||||||+
T Consensus        92 ~~i~~~~~p~aivivvsNPvDv~t~~~----~~~sg~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~VlGeHG~  167 (309)
T PLN00135         92 SALEKHAAPDCKVLVVANPANTNALIL----KEFAPSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHSS  167 (309)
T ss_pred             HHHHHhcCCCeEEEEeCCcHHHHHHHH----HHHcCCCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeEEEEcCCC
Confidence            999996 89999999999999999765    56789999999999 89999999999999999999999 6999999999


Q ss_pred             CeeeeecccccC----CC-C----CChhh--HHHHHHHHHhhhHHHhhhcCCCCcchHHHHHHHHHHHHHHhcC
Q 022947          225 VTILPLLSQVKP----SC-S----LTPTE--IDYLTDRIQNGGTEVVEAKTGAGSATLSMCRHMLLPSLPMLVS  287 (289)
Q Consensus       225 ~~~vp~~S~~~v----~~-~----~~~~~--~~~i~~~v~~~g~~i~~~k~g~g~t~~s~A~a~~~~~~ail~~  287 (289)
                       ++||+||++++    ++ +    +.+++  +++|.++++++|++|+++|  ||+|+||+|.++++++++|+++
T Consensus       168 -s~v~~~S~a~v~~~~~g~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii~~~--kg~t~~~ia~a~~~iv~ai~~~  238 (309)
T PLN00135        168 -TQYPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKAR--KLSSALSAASSACDHIRDWVLG  238 (309)
T ss_pred             -ceeeccccceEecCCCCcCHHHHhCchhhHHHHHHHHHHHHHHHHHHcc--CccHHHHHHHHHHHHHHHHHhC
Confidence             99999999999    43 1    23333  6899999999999999974  5799999999999999999983

>TIGR01756 LDH_protist lactate dehydrogenase

Probab=100.00  E-value=1e-43  Score=330.25  Aligned_cols=205  Identities=22%  Similarity=0.288  Sum_probs=178.1

Q ss_pred             EEEEEeCCC----chhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHH
Q 022947           74 VLHLYDVVN----TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEG  149 (289)
Q Consensus        74 eI~LvD~~~----~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~  149 (289)
                      .++|+|+++    ++|+++||.|+. .+.......+++++++++|||+||+|||.|+++|++|.|++..|+++++++++.
T Consensus        17 ~l~L~D~~~~~~~a~g~a~Dl~d~~-~~~~~~~i~~~~~~~~~~daDiVVitaG~~~k~g~tR~dll~~N~~I~~~i~~~   95 (313)
T TIGR01756        17 CLHLLEIPPALNRLEALAMELEDCA-FPNLAGTIVTTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGEA   95 (313)
T ss_pred             EEEEecCCCccchhHhHHHHHHHhc-cccCCceEecCCHHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHH
Confidence            899999977    589999999997 222211112457778999999999999999999999999999999999999999


Q ss_pred             HHHhCC-CcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHHHHHHHHcCCCCcceeee-EEcccCCCe
Q 022947          150 IAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVP-VVGGHAGVT  226 (289)
Q Consensus       150 i~~~~p-~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R~~~~lA~~l~v~~~~V~~~-V~G~hg~~~  226 (289)
                      |++++| ++++|++|||+|+|||++.   ++.+++|++ +||+ |.|||+||+++||++++++|++|+.+ ||||||+ +
T Consensus        96 i~~~a~~~~ivivvtNPvDv~t~v~~---~~~sg~p~~-vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~V~GeHG~-s  170 (313)
T TIGR01756        96 LSEYAKPTVKVLVIGNPVNTNCLVAM---LHAPKLSAE-NFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVVWGNHAE-S  170 (313)
T ss_pred             HHhhCCCCeEEEEeCCchHHHHHHHH---HHcCCCCHH-HEEecccHHHHHHHHHHHHHhCcChhheeeeEEEECCCC-c
Confidence            999995 5889999999999997652   478999999 9999 89999999999999999999999755 9999998 9


Q ss_pred             eeeecccccC--CCC-------CChh-hHHHHHHHHHhhhHHHhhhcCCCCcchHHHH-HHHHHHHHHHhcC
Q 022947          227 ILPLLSQVKP--SCS-------LTPT-EIDYLTDRIQNGGTEVVEAKTGAGSATLSMC-RHMLLPSLPMLVS  287 (289)
Q Consensus       227 ~vp~~S~~~v--~~~-------~~~~-~~~~i~~~v~~~g~~i~~~k~g~g~t~~s~A-~a~~~~~~ail~~  287 (289)
                      |||+||++++  ++.       ++++ .+++|.++++++|++|++.|   |+|+|+++ .++++++++|++|
T Consensus       171 ~vp~~S~~~V~~~G~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k---g~t~~~~~a~ai~~iv~ail~~  239 (313)
T TIGR01756       171 MVADLTHAEFTKNGKHQKVFDELCRDYPEPDFFEVIAQRAWKILEMR---GFTSAASPVKASLQHMKAWLFG  239 (313)
T ss_pred             eeecccccEEecCCeehhHhhhcCcHhHHHHHHHHHHHHHHHHHhCc---CCcchHHHHHHHHHHHHHHhcC
Confidence            9999999999  541       2332 36899999999999999954   78999988 6999999999994

This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=100.00  E-value=3.9e-41  Score=306.32  Aligned_cols=197  Identities=32%  Similarity=0.487  Sum_probs=177.6

Q ss_pred             EEEEcCCCccHHHHHHHHHhCC--CccEEEEEeCCC--chhHHhhhhcccCCc-eEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           49 VAVLGAAGGIGQPLAMLMKINP--LVSVLHLYDVVN--TPGVTADISHMDTNA-VVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~g--~~~eI~LvD~~~--~~g~~~DL~~~~~~~-~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      |+||||+|.+|+++++.|+..+  ...||+|+|+++  +++.++|+.|..... ..+.. .++|++++++|||+||+++|
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~-~~~d~~~~~~~aDiVv~t~~   79 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVS-ITDDPYEAFKDADVVIITAG   79 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEE-ECCchHHHhCCCCEEEECCC
Confidence            6899988999999999999999  778999999987  678899999876432 23332 35677799999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHH
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFV  203 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t~lds~R~~~~l  203 (289)
                      .++++|++|.+++.+|++++++++++|+++||++|++++|||+|++|+++    ++.+++|++|+||+|.+|++|+++++
T Consensus        80 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~----~~~sg~~~~kviG~~~ld~~r~~~~l  155 (263)
T cd00650          80 VGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLV----WRYSGLPKEKVIGLGTLDPIRFRRIL  155 (263)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHhCCCchhEEEeecchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999765    56679999999999669999999999


Q ss_pred             HHHcCCCCcceeeeEEcccCCCeeeeecccccCCCCCChhhHHHHHHHHHhhhHHHhhhcCCCCcchHHHHHHHHHHHHH
Q 022947          204 AEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMCRHMLLPSLP  283 (289)
Q Consensus       204 A~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~~s~A~a~~~~~~a  283 (289)
                      |+++++++++|+++|||+||+ +++|+||+++                                     +|.++++++++
T Consensus       156 a~~l~v~~~~v~~~v~G~hg~-~~~~~~s~~~-------------------------------------~a~~~~~ii~a  197 (263)
T cd00650         156 AEKLGVDPDDVKVYILGEHGG-SQVPDWSTVR-------------------------------------IATSIADLIRS  197 (263)
T ss_pred             HHHhCCCccceEEEEEEcCCC-ceEeccccch-------------------------------------HHHHHHHHHHH
Confidence            999999999999999999998 8999999864                                     78889999999


Q ss_pred             HhcCC
Q 022947          284 MLVSE  288 (289)
Q Consensus       284 il~~~  288 (289)
                      |++|+
T Consensus       198 i~~~~  202 (263)
T cd00650         198 LLNDE  202 (263)
T ss_pred             HHcCC
Confidence            99886

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=2.3e-36  Score=264.82  Aligned_cols=237  Identities=24%  Similarity=0.361  Sum_probs=208.3

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCC-----ccEEEEEeCCC----chhHHhhhhcccCCceEEEEecCCCHHhhhCC
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVN----TPGVTADISHMDTNAVVRGFLGQQQLEDALTG  114 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~-----~~eI~LvD~~~----~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~  114 (289)
                      +++.+|.|+||+|++|+++.+.++....     ...++|+|+.+    .+|..++|+++. ++.++....++|..++|+|
T Consensus         2 ~epirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a-~PlL~~Vvattd~~~afkd   80 (332)
T KOG1496|consen    2 KEPIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCA-LPLLKGVVATTDEVEAFKD   80 (332)
T ss_pred             CCceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhh-hhHHHhhhcccChhhhhcc
Confidence            3567999999999999999999886421     23799999987    589999999997 4666554456788899999


Q ss_pred             CCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeee
Q 022947          115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTM  193 (289)
Q Consensus       115 aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t~  193 (289)
                      .|+.|+.+++||++||+|.|++..|++|+++.+..+++|+ |+++|+++.||+|..+.++.   +.+..+|.+++-.+|.
T Consensus        81 v~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~~---k~ApsIP~kNfs~lTR  157 (332)
T KOG1496|consen   81 VDVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALILK---KFAPSIPEKNFSALTR  157 (332)
T ss_pred             CcEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHHh---hhCCCCchhcchhhhh
Confidence            9999999999999999999999999999999999999998 99999999999999998765   4467899999999999


Q ss_pred             ccHHHHHHHHHHHcCCCCcce-eeeEEcccCCCeeeeecccccCCC---------CCChhhH--HHHHHHHHhhhHHHhh
Q 022947          194 LDVVRANTFVAEVLGLDPREV-DVPVVGGHAGVTILPLLSQVKPSC---------SLTPTEI--DYLTDRIQNGGTEVVE  261 (289)
Q Consensus       194 lds~R~~~~lA~~l~v~~~~V-~~~V~G~hg~~~~vp~~S~~~v~~---------~~~~~~~--~~i~~~v~~~g~~i~~  261 (289)
                      ||.+|...+||.++|++.++| ++.+||+|+. ||+|+..++++..         .+++..|  .++++.|+++|..|++
T Consensus       158 LDhNRA~~QlA~klgv~~~~VkNviIWGNHSs-TQyPD~~hA~V~~~~~~~~v~e~v~d~~wL~g~Fi~tVQkRGaavi~  236 (332)
T KOG1496|consen  158 LDHNRALAQLALKLGVPVSDVKNVIIWGNHSS-TQYPDVNHATVNTNGGEKPVKEAVKDDAWLQGEFIETVQKRGAAVIK  236 (332)
T ss_pred             hchhhHHHHHHHhhCCchhhcceeEEeccccc-ccCCCccceeeeccCCcccHHHHhccchhhccchhhHHHhcchHhhh
Confidence            999999999999999999999 5899999997 9999999999852         1445555  6999999999999999


Q ss_pred             hcCCCCcchHHHHHHHHHHHHHHhcC
Q 022947          262 AKTGAGSATLSMCRHMLLPSLPMLVS  287 (289)
Q Consensus       262 ~k~g~g~t~~s~A~a~~~~~~ail~~  287 (289)
                      .+  |-|+.+|.|.++|+.++.|++-
T Consensus       237 ar--k~SSA~SaA~aacDhi~dw~~g  260 (332)
T KOG1496|consen  237 AR--KLSSAMSAAKAACDHIRDWWFG  260 (332)
T ss_pred             hh--hhhhhhhHHHhHhhhhhheecC
Confidence            75  6789999999999999998753

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=100.00  E-value=7.6e-34  Score=235.90  Aligned_cols=139  Identities=39%  Similarity=0.620  Sum_probs=123.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      |||+||||+|.||+++++.|++.++.+||+|+|+++  ++|+++||+|..............+ +++++|||+||+++|.
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~-~~~~~~aDivvitag~   79 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGD-YEALKDADIVVITAGV   79 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESS-GGGGTTESEEEETTST
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccccc-ccccccccEEEEeccc
Confidence            699999999999999999999999999999999997  7899999999875432222222345 4899999999999999


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEE
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG  190 (289)
                      |+++|++|.+++..|+++++++++++++++|+++++++|||+|+||++    +++.++|||+|+||
T Consensus        80 ~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd~~t~~----~~~~s~~~~~kviG  141 (141)
T PF00056_consen   80 PRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVDVMTYV----AQKYSGFPPNKVIG  141 (141)
T ss_dssp             SSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHHHHHHH----HHHHHTSSGGGEEE
T ss_pred             cccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHHHHHHH----HHHhhCcCcccCcC
Confidence            999999999999999999999999999999999999999999999865    46778999999998

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK15076 alpha-galactosidase; Provisional

Probab=99.92  E-value=3.2e-25  Score=214.61  Aligned_cols=166  Identities=20%  Similarity=0.252  Sum_probs=131.0

Q ss_pred             CCEEEEEcCCCccHHHHHH--HHH-hCCCc-cEEEEEeCCC--ch-hHHhhhhcccC--CceEEEEecCCCHHhhhCCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAM--LMK-INPLV-SVLHLYDVVN--TP-GVTADISHMDT--NAVVRGFLGQQQLEDALTGMD  116 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~--~L~-~~g~~-~eI~LvD~~~--~~-g~~~DL~~~~~--~~~v~~~~~t~d~~eal~~aD  116 (289)
                      ++||+|||| |.+|.+.++  .++ ..++. .||+|+|+++  .+ +..+ +.+...  ....+.. .++|++++++|||
T Consensus         1 ~~KIaIIGa-Gsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l-~~~~~~~~~~~~~i~-~ttD~~eal~dAD   77 (431)
T PRK15076          1 MPKITFIGA-GSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIV-ARKLAESLGASAKIT-ATTDRREALQGAD   77 (431)
T ss_pred             CcEEEEECC-CHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHH-HHHHHHhcCCCeEEE-EECCHHHHhCCCC
Confidence            369999999 999998876  555 34454 4999999988  22 3333 333221  2233332 3568889999999


Q ss_pred             EEEEcCCCC-CCCC--------------CchhhH--------HHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHH
Q 022947          117 IVIIPAGVP-RKPG--------------MTRDDL--------FNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIA  173 (289)
Q Consensus       117 iVIitag~~-~~~g--------------~~r~d~--------~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~  173 (289)
                      +||++++++ .+++              ++|.|.        +.+|+++++++++.|+++||+||+|++|||+|++|+.+
T Consensus        78 fVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~  157 (431)
T PRK15076         78 YVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAM  157 (431)
T ss_pred             EEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Confidence            999999887 4444              556677        89999999999999999999999999999999999653


Q ss_pred             HHHHHHhCCCCCCcEEEee--eccHHHHHHHHHHHcCCCCcceeeeEEcccCC
Q 022947          174 AEVFKKVGTYDPKRLLGVT--MLDVVRANTFVAEVLGLDPREVDVPVVGGHAG  224 (289)
Q Consensus       174 ~~~~~~~~~~~~~kviG~t--~lds~R~~~~lA~~l~v~~~~V~~~V~G~hg~  224 (289)
                          +   ++|+.||||+|  .+|+.   +.+|+.+|+++++|++++.|-+|-
T Consensus       158 ----~---~~~~~rviG~c~~~~~~~---~~ia~~l~v~~~~v~~~~~GlNH~  200 (431)
T PRK15076        158 ----N---RYPGIKTVGLCHSVQGTA---EQLARDLGVPPEELRYRCAGINHM  200 (431)
T ss_pred             ----h---cCCCCCEEEECCCHHHHH---HHHHHHhCCCHHHeEEEEEeecch
Confidence                3   68889999997  57765   789999999999999999997665

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=99.92  E-value=1.4e-24  Score=209.71  Aligned_cols=176  Identities=23%  Similarity=0.273  Sum_probs=130.6

Q ss_pred             CEEEEEcCCCccHH-HHHHHHHhCC--C-ccEEEEEeCCCc-hh----HHhhhhcccCCceEEEEecCCCHHhhhCCCCE
Q 022947           47 FKVAVLGAAGGIGQ-PLAMLMKINP--L-VSVLHLYDVVNT-PG----VTADISHMDTNAVVRGFLGQQQLEDALTGMDI  117 (289)
Q Consensus        47 ~KI~IIGaaG~VGs-~la~~L~~~g--~-~~eI~LvD~~~~-~g----~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDi  117 (289)
                      +||+|||| |+.=+ .+...|+...  + .+||+|+|+++. ..    .+..+.... ...++.. .|+|+++|++|||+
T Consensus         1 ~KI~iIGg-GS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~-g~~~~v~-~ttD~~~Al~gADf   77 (425)
T cd05197           1 VKIAIIGG-GSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEV-GADIKFE-KTMDLEDAIIDADF   77 (425)
T ss_pred             CEEEEECC-chHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhh-CCCeEEE-EeCCHHHHhCCCCE
Confidence            69999999 65411 1223444333  2 489999999982 11    122222222 2344443 36799999999999


Q ss_pred             EEEcCCC------------CCCCC---Cc-----hhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHH
Q 022947          118 VIIPAGV------------PRKPG---MT-----RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVF  177 (289)
Q Consensus       118 VIitag~------------~~~~g---~~-----r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~  177 (289)
                      ||.+.-+            |.+.|   ++     ......+|+++++++++.|+++||+||+|++|||+|+||+++    
T Consensus        78 Vi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~di~t~a~----  153 (425)
T cd05197          78 VINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAGEVTEAV----  153 (425)
T ss_pred             EEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChHHHHHHHH----
Confidence            9998532            22332   11     234567999999999999999999999999999999999765    


Q ss_pred             HHhCCCCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEEc-ccCCCeeeeecccccCC
Q 022947          178 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG-GHAGVTILPLLSQVKPS  237 (289)
Q Consensus       178 ~~~~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~G-~hg~~~~vp~~S~~~v~  237 (289)
                      ++.  +|+.||||+|.. +.|+++.+|+.+|+++++|+++|+| +||     |+||.+++.
T Consensus       154 ~~~--~p~~rviG~c~~-~~r~~~~ia~~lgv~~~~v~~~v~GlnHg-----~~~s~~~~~  206 (425)
T cd05197         154 RRY--VPPEKAVGLCNV-PIGVMEIVAKLLGESEEKVDWQYAGLNHG-----IWLNRVRYN  206 (425)
T ss_pred             HHh--CCCCcEEEECCC-HHHHHHHHHHHhCCCHHHeEEEEEeccCe-----EeeEeEEEC
Confidence            444  378999999877 9999999999999999999999999 997     678877653

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=99.91  E-value=3.8e-24  Score=206.30  Aligned_cols=167  Identities=19%  Similarity=0.269  Sum_probs=126.7

Q ss_pred             CEEEEEcCCCccHHHH-HHHHHhC-C--CccEEEEEeCC-Cc-h----hHHhhhhcccCCceEEEEecCCCHHhhhCCCC
Q 022947           47 FKVAVLGAAGGIGQPL-AMLMKIN-P--LVSVLHLYDVV-NT-P----GVTADISHMDTNAVVRGFLGQQQLEDALTGMD  116 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~l-a~~L~~~-g--~~~eI~LvD~~-~~-~----g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aD  116 (289)
                      |||+|||| |++.... ...|+.. .  ..+||+|+|++ +. .    ..+.++.... ...++.. .|+|+++|++|||
T Consensus         1 ~KI~iIGa-GS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~-~~~~~v~-~t~d~~~al~gad   77 (419)
T cd05296           1 MKLTIIGG-GSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKA-GLPIKVH-LTTDRREALEGAD   77 (419)
T ss_pred             CEEEEECC-chHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhh-CCCeEEE-EeCCHHHHhCCCC
Confidence            69999999 7653322 2344442 2  35899999999 51 1    1122222221 2344433 3678999999999


Q ss_pred             EEEEcCCCCCCCCCchhh--------------------HHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHH
Q 022947          117 IVIIPAGVPRKPGMTRDD--------------------LFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV  176 (289)
Q Consensus       117 iVIitag~~~~~g~~r~d--------------------~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~  176 (289)
                      +||+++++++.++.++.+                    ...+|+++++++++.|+++||+||+|++|||+|++|+++   
T Consensus        78 fVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~ivt~a~---  154 (419)
T cd05296          78 FVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAGIVTEAV---  154 (419)
T ss_pred             EEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHH---
Confidence            999998877666555444                    367899999999999999999999999999999998654   


Q ss_pred             HHHhCCCCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEEc-ccCC
Q 022947          177 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG-GHAG  224 (289)
Q Consensus       177 ~~~~~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~G-~hg~  224 (289)
                       ++.+   +.||||+|.. +.|+++.+|+.+|+++++|+++|+| +|-.
T Consensus       155 -~k~~---~~rviGlc~~-~~r~~~~ia~~lg~~~~~v~~~v~GlNH~~  198 (419)
T cd05296         155 -LRHT---GDRVIGLCNV-PIGLQRRIAELLGVDPEDVFIDYAGLNHLG  198 (419)
T ss_pred             -HHhc---cCCEEeeCCc-HHHHHHHHHHHhCCCHHHceEEEEecccce
Confidence             5544   7899999977 4899999999999999999999999 7643

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=99.87  E-value=2.3e-21  Score=187.69  Aligned_cols=168  Identities=21%  Similarity=0.195  Sum_probs=129.6

Q ss_pred             CEEEEEcCCCccHHHHHH--HHHhC-CCc-cEEEEEeCCC--chhHHhhhhccc--CCceEEEEecCCCHHhhhCCCCEE
Q 022947           47 FKVAVLGAAGGIGQPLAM--LMKIN-PLV-SVLHLYDVVN--TPGVTADISHMD--TNAVVRGFLGQQQLEDALTGMDIV  118 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~--~L~~~-g~~-~eI~LvD~~~--~~g~~~DL~~~~--~~~~v~~~~~t~d~~eal~~aDiV  118 (289)
                      +||+|||| |.+|++.+.  .++.. .+. .+|+|+|+++  .+....++.+..  .....+.. .++|++++++|||+|
T Consensus         1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~-~ttD~~eal~~AD~V   78 (423)
T cd05297           1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIE-ATTDRREALDGADFV   78 (423)
T ss_pred             CeEEEECC-ChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEE-EeCCHHHHhcCCCEE
Confidence            48999998 999999876  45433 332 3999999988  333334443321  11222322 356888999999999


Q ss_pred             EEcCCCCCCCCCch----------------------hhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHH
Q 022947          119 IIPAGVPRKPGMTR----------------------DDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV  176 (289)
Q Consensus       119 Iitag~~~~~g~~r----------------------~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~  176 (289)
                      |++++.+..++.++                      .....+|++++.++++.++++||++|++++|||+++||+++   
T Consensus        79 i~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t~~~---  155 (423)
T cd05297          79 INTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWAL---  155 (423)
T ss_pred             EEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHHHHH---
Confidence            99988665554443                      34567899999999999999999999999999999999654   


Q ss_pred             HHHhCCCCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEEcccCC
Q 022947          177 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG  224 (289)
Q Consensus       177 ~~~~~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~G~hg~  224 (289)
                       ++.++   .|+||+|.- +.|+++.+|+.+++++++|+++++|-+|-
T Consensus       156 -~k~~~---~rviG~c~~-~~~~~~~~a~~l~~~~~~v~~~~~GlNH~  198 (423)
T cd05297         156 -NRYTP---IKTVGLCHG-VQGTAEQLAKLLGEPPEEVDYQVAGINHM  198 (423)
T ss_pred             -HHhCC---CCEEEECCc-HHHHHHHHHHHhCCCHHHeEEEEEeeccH
Confidence             55554   799999865 88899999999999999999999996654

linked to 3D####ucture

>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=99.85  E-value=1.8e-21  Score=166.92  Aligned_cols=94  Identities=34%  Similarity=0.514  Sum_probs=87.1

Q ss_pred             eeccHHHHHHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCC-----------CCChhhHHHHHHHHHhhhHHHh
Q 022947          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-----------SLTPTEIDYLTDRIQNGGTEVV  260 (289)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~-----------~~~~~~~~~i~~~v~~~g~~i~  260 (289)
                      |.||++||+++||+++|++|++++++||||||+ ++||+||++++.+           .++++++++|.++++++|++|+
T Consensus         1 T~LDs~R~~~~la~~l~v~~~~v~~~ViGeHg~-s~~~~~S~~~v~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii   79 (174)
T PF02866_consen    1 TMLDSARFRYFLAEKLGVNPSSVNAYVIGEHGD-SQVPDWSHAKVGGVPLLSYAKPSGKLSEEELEELTERVRKAGYEII   79 (174)
T ss_dssp             THHHHHHHHHHHHHHHTSGGGGEEEEEEBSSST-TEEEEGGGEEETTEEHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHCcCccceEEEEEecCCc-ceeeeeecccccccccccccccccchhHHhhhccccccEeccceee
Confidence            679999999999999999999999999999999 9999999999852           3566778999999999999999


Q ss_pred             hhcCCCCcchHHHHHHHHHHHHHHhcCC
Q 022947          261 EAKTGAGSATLSMCRHMLLPSLPMLVSE  288 (289)
Q Consensus       261 ~~k~g~g~t~~s~A~a~~~~~~ail~~~  288 (289)
                      +.|+  |+++||+|.|+++++++|++|+
T Consensus        80 ~~k~--g~t~~s~A~a~~~~v~ail~~~  105 (174)
T PF02866_consen   80 KAKG--GSTSYSIAAAAARIVEAILKDE  105 (174)
T ss_dssp             HHHS--SSCHHHHHHHHHHHHHHHHTTH
T ss_pred             eecc--ccCcCCHHHHHHHHHHHHhhcc
Confidence            9883  8899999999999999999985

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=99.84  E-value=3.5e-20  Score=179.56  Aligned_cols=168  Identities=20%  Similarity=0.254  Sum_probs=121.9

Q ss_pred             CEEEEEcCCCccHH-HHHHHHHhC--CC-ccEEEEEeCCC-chh----HHhhhhcccCCceEEEEecCCCHHhhhCCCCE
Q 022947           47 FKVAVLGAAGGIGQ-PLAMLMKIN--PL-VSVLHLYDVVN-TPG----VTADISHMDTNAVVRGFLGQQQLEDALTGMDI  117 (289)
Q Consensus        47 ~KI~IIGaaG~VGs-~la~~L~~~--g~-~~eI~LvD~~~-~~g----~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDi  117 (289)
                      |||+|||| |++=+ .+...|++.  .+ .+||+|+|+++ ...    .+..+.... ...+++. .|+|+++|++|||+
T Consensus         1 ~KI~iIGa-GS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~-g~~~~v~-~Ttdr~eAl~gADf   77 (437)
T cd05298           1 FKIVIAGG-GSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKEN-YPEIKFV-YTTDPEEAFTDADF   77 (437)
T ss_pred             CeEEEECC-cHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhh-CCCeEEE-EECCHHHHhCCCCE
Confidence            69999999 65411 122344444  23 48999999998 211    122222221 2344443 36799999999999


Q ss_pred             EEEcCCC------------CCCCC---Cc-----hhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHH
Q 022947          118 VIIPAGV------------PRKPG---MT-----RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVF  177 (289)
Q Consensus       118 VIitag~------------~~~~g---~~-----r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~  177 (289)
                      ||.+..+            |.+.|   ++     ..-...+|+++++++++.|+++||+||+|++|||+|++|+.+    
T Consensus        78 Vi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~~vt~~~----  153 (437)
T cd05298          78 VFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAAIVAEAL----  153 (437)
T ss_pred             EEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----
Confidence            9998532            22222   11     234568999999999999999999999999999999999654    


Q ss_pred             HHhCCCCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEEcccCC
Q 022947          178 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG  224 (289)
Q Consensus       178 ~~~~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~G~hg~  224 (289)
                      ++.  +|+.||||+|+--. .++..+|+.||+++++|+..+.|-+|-
T Consensus       154 ~~~--~~~~kviGlC~~~~-~~~~~la~~lg~~~~~v~~~~~GlNH~  197 (437)
T cd05298         154 RRL--FPNARILNICDMPI-AIMDSMAAILGLDRKDLEPDYFGLNHF  197 (437)
T ss_pred             HHH--CCCCCEEEECCcHH-HHHHHHHHHhCCCHHHceEEEEeecch
Confidence            443  78899999997533 478889999999999999999996554

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=99.80  E-value=8e-19  Score=151.14  Aligned_cols=152  Identities=20%  Similarity=0.248  Sum_probs=103.0

Q ss_pred             EEEEEcCCCccHHHHHH--HHHhCC-C-ccEEEEEeCCCc-----hhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEE
Q 022947           48 KVAVLGAAGGIGQPLAM--LMKINP-L-VSVLHLYDVVNT-----PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIV  118 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~--~L~~~g-~-~~eI~LvD~~~~-----~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiV  118 (289)
                      ||+|||| |++-.+...  .+...+ + .+||+|+|+|+.     ...+..+.... ...++.. .|+|+++|++|||+|
T Consensus         1 KI~iIGa-GS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~-~~~~~v~-~ttd~~eAl~gADfV   77 (183)
T PF02056_consen    1 KITIIGA-GSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEA-GADLKVE-ATTDRREALEGADFV   77 (183)
T ss_dssp             EEEEETT-TSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHC-TTSSEEE-EESSHHHHHTTESEE
T ss_pred             CEEEECC-chHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhc-CCCeEEE-EeCCHHHHhCCCCEE
Confidence            8999999 888776542  333333 2 469999999981     11222222222 2333432 367999999999999


Q ss_pred             EEcCC------------CCCCCCCc----------hhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHH
Q 022947          119 IIPAG------------VPRKPGMT----------RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV  176 (289)
Q Consensus       119 Iitag------------~~~~~g~~----------r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~  176 (289)
                      |.+..            .|.+.|..          ......++++.+.++++.|+++|||||++++|||+..+|..+   
T Consensus        78 i~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~~~vt~a~---  154 (183)
T PF02056_consen   78 INQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPMGIVTEAL---  154 (183)
T ss_dssp             EE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHHHHHHHH---
T ss_pred             EEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChHHHHHHHH---
Confidence            99854            24444321          234567999999999999999999999999999999988543   


Q ss_pred             HHHhCCCCCCcEEEeeeccHHHHHHHHHHHcCC
Q 022947          177 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGL  209 (289)
Q Consensus       177 ~~~~~~~~~~kviG~t~lds~R~~~~lA~~l~v  209 (289)
                       .+.  +|..|++|+|+-. .-+...+|+.||+
T Consensus       155 -~r~--~~~~k~vGlCh~~-~~~~~~la~~L~~  183 (183)
T PF02056_consen  155 -SRY--TPKIKVVGLCHGP-QGTRRQLAKLLGM  183 (183)
T ss_dssp             -HHH--STTSEEEEE-SHH-HHHHHHHHHHHT-
T ss_pred             -HHh--CCCCCEEEECCCH-HHHHHHHHHHhCc
Confidence             443  4568999999753 3467889998874

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]

Probab=99.80  E-value=9.4e-19  Score=167.31  Aligned_cols=170  Identities=22%  Similarity=0.327  Sum_probs=122.3

Q ss_pred             CCCEEEEEcCCCccHHHHHH--HHHhCC--CccEEEEEeCCC-chhHH----hhhhcccCCceEEEEecCCCHHhhhCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAM--LMKINP--LVSVLHLYDVVN-TPGVT----ADISHMDTNAVVRGFLGQQQLEDALTGM  115 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~--~L~~~g--~~~eI~LvD~~~-~~g~~----~DL~~~~~~~~v~~~~~t~d~~eal~~a  115 (289)
                      ++.||+|||| |+++.+...  .|.+.+  ...||.|+|+++ .....    ..+.... ...++... ++|+++|++||
T Consensus         2 ~~~KI~iIGg-GSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~-g~~~kv~~-ttd~~eAl~gA   78 (442)
T COG1486           2 KKFKIVIIGG-GSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEA-GAPVKVEA-TTDRREALEGA   78 (442)
T ss_pred             CcceEEEECC-CccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhh-CCCeEEEE-ecCHHHHhcCC
Confidence            4579999999 888776532  333332  357999999998 22222    2222222 23355433 67899999999


Q ss_pred             CEEEEcCC------------CCCCCCCc--------hhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHH
Q 022947          116 DIVIIPAG------------VPRKPGMT--------RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE  175 (289)
Q Consensus       116 DiVIitag------------~~~~~g~~--------r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~  175 (289)
                      |||+.+.-            +|.|.|-.        ..-...++++.+.+|++.|+++||+||++++|||+.++|+.+  
T Consensus        79 dfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~~~vTeAv--  156 (442)
T COG1486          79 DFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPAAIVTEAV--  156 (442)
T ss_pred             CEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChHHHHHHHH--
Confidence            99999852            23344321        123456899999999999999999999999999999998654  


Q ss_pred             HHHHhCCCCCCcEEEeeeccHHHHHHHHHHHcCCCC-cceeeeEEcccCC
Q 022947          176 VFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDP-REVDVPVVGGHAG  224 (289)
Q Consensus       176 ~~~~~~~~~~~kviG~t~lds~R~~~~lA~~l~v~~-~~V~~~V~G~hg~  224 (289)
                        ++.  +|.-|++|+|+-. .-....+|+.||+++ ++++..+.|-+|-
T Consensus       157 --~r~--~~~~K~VGlCh~~-~g~~~~lAe~L~~~~~~~l~~~~aGlNH~  201 (442)
T COG1486         157 --RRL--YPKIKIVGLCHGP-IGIAMELAEVLGLEPREDLRYRVAGLNHM  201 (442)
T ss_pred             --HHh--CCCCcEEeeCCch-HHHHHHHHHHhCCCchhceeEEEeechhh
Confidence              443  4544999999753 346789999999975 9999999996554

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=99.05  E-value=7.2e-09  Score=98.19  Aligned_cols=115  Identities=19%  Similarity=0.303  Sum_probs=85.4

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc------hhH-------HhhhhcccC-CceEEEEecCCCHHhhh
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT------PGV-------TADISHMDT-NAVVRGFLGQQQLEDAL  112 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~------~g~-------~~DL~~~~~-~~~v~~~~~t~d~~eal  112 (289)
                      |||+|+|. |+||...+..|++.|+  +|+++|+++.      .|+       ..+|..... ..+++   .|+|+++++
T Consensus         1 MkI~viGt-GYVGLv~g~~lA~~GH--eVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~---fTtd~~~a~   74 (414)
T COG1004           1 MKITVIGT-GYVGLVTGACLAELGH--EVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLR---FTTDYEEAV   74 (414)
T ss_pred             CceEEECC-chHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEE---EEcCHHHHH
Confidence            79999998 9999999999999998  9999999872      111       112222211 22355   367999999


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEe--cCCCcccHHHH
Q 022947          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI--SNPVNSTVPIA  173 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~--tNPvd~~t~~~  173 (289)
                      +++|++|++.|+|.++..      ..++..+...++.|.++.+...++|+  |=|+.....+-
T Consensus        75 ~~adv~fIavgTP~~~dg------~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~  131 (414)
T COG1004          75 KDADVVFIAVGTPPDEDG------SADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVR  131 (414)
T ss_pred             hcCCEEEEEcCCCCCCCC------CccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHH
Confidence            999999999999987633      24678899999999988866344444  77888765543

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=98.98  E-value=6.3e-09  Score=96.60  Aligned_cols=140  Identities=24%  Similarity=0.308  Sum_probs=98.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC---chhH--Hh----hhhccc------CCceEEEEecCCCHHh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGV--TA----DISHMD------TNAVVRGFLGQQQLED  110 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~---~~g~--~~----DL~~~~------~~~~v~~~~~t~d~~e  110 (289)
                      .+||+|||| |.+|+.+|+.++..|+  +|+|+|+++   ..+.  ..    .+....      ....+..+..++++ +
T Consensus         3 i~kv~ViGa-G~MG~gIA~~~A~~G~--~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~-~   78 (307)
T COG1250           3 IKKVAVIGA-GVMGAGIAAVFALAGY--DVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDL-A   78 (307)
T ss_pred             ccEEEEEcc-cchhHHHHHHHhhcCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCch-h
Confidence            469999998 9999999999999778  999999986   1111  11    111110      01112223345676 5


Q ss_pred             hhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcc-cHHHHHHHHHHhCCCCCCcE
Q 022947          111 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS-TVPIAAEVFKKVGTYDPKRL  188 (289)
Q Consensus       111 al~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~-~t~~~~~~~~~~~~~~~~kv  188 (289)
                      ++++||+||.++              .+|.++.+++.+++.+++ |++++  .||.+.+ ++.++     ..+ -.|+|+
T Consensus        79 ~l~~~DlVIEAv--------------~E~levK~~vf~~l~~~~~~~aIl--ASNTSsl~it~ia-----~~~-~rper~  136 (307)
T COG1250          79 ALKDADLVIEAV--------------VEDLELKKQVFAELEALAKPDAIL--ASNTSSLSITELA-----EAL-KRPERF  136 (307)
T ss_pred             HhccCCEEEEec--------------cccHHHHHHHHHHHHhhcCCCcEE--eeccCCCCHHHHH-----HHh-CCchhE
Confidence            899999999984              468999999999999998 78877  8999986 44332     223 557889


Q ss_pred             EEe-------------------eeccHHHHHHHHHHHcCCCC
Q 022947          189 LGV-------------------TMLDVVRANTFVAEVLGLDP  211 (289)
Q Consensus       189 iG~-------------------t~lds~R~~~~lA~~l~v~~  211 (289)
                      +|+                   |.-++...-..+++++|..|
T Consensus       137 iG~HFfNP~~~m~LVEvI~g~~T~~e~~~~~~~~~~~igK~~  178 (307)
T COG1250         137 IGLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTP  178 (307)
T ss_pred             EEEeccCCCCcceeEEEecCCCCCHHHHHHHHHHHHHcCCCC
Confidence            998                   22355556677888888554

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=98.97  E-value=2.7e-09  Score=92.03  Aligned_cols=117  Identities=25%  Similarity=0.387  Sum_probs=77.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-----hhHHhh-hh---ccc---------CCceEEEEecCCCHH
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-----PGVTAD-IS---HMD---------TNAVVRGFLGQQQLE  109 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-----~g~~~D-L~---~~~---------~~~~v~~~~~t~d~~  109 (289)
                      ||+|||+ |.+|..+|..++..|+  +|.|+|.++.     .....+ +.   ...         ...+++.   ++|++
T Consensus         1 ~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~---~~dl~   74 (180)
T PF02737_consen    1 KVAVIGA-GTMGRGIAALFARAGY--EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF---TTDLE   74 (180)
T ss_dssp             EEEEES--SHHHHHHHHHHHHTTS--EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE---ESSGG
T ss_pred             CEEEEcC-CHHHHHHHHHHHhCCC--cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc---ccCHH
Confidence            7999998 9999999999999998  9999999871     111111 11   000         0224443   46775


Q ss_pred             hhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcE
Q 022947          110 DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRL  188 (289)
Q Consensus       110 eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kv  188 (289)
                      + +.+||+||.+.              .++.++.+++...+++++ |++++  +||....-.   +++. .... .|+|+
T Consensus        75 ~-~~~adlViEai--------------~E~l~~K~~~~~~l~~~~~~~~il--asnTSsl~i---~~la-~~~~-~p~R~  132 (180)
T PF02737_consen   75 E-AVDADLVIEAI--------------PEDLELKQELFAELDEICPPDTIL--ASNTSSLSI---SELA-AALS-RPERF  132 (180)
T ss_dssp             G-GCTESEEEE-S---------------SSHHHHHHHHHHHHCCS-TTSEE--EE--SSS-H---HHHH-TTSS-TGGGE
T ss_pred             H-Hhhhheehhhc--------------cccHHHHHHHHHHHHHHhCCCceE--EecCCCCCH---HHHH-hccC-cCceE
Confidence            5 55999999984              357899999999999998 68876  788876533   2222 2333 57788


Q ss_pred             EEee
Q 022947          189 LGVT  192 (289)
Q Consensus       189 iG~t  192 (289)
                      +|+-
T Consensus       133 ig~H  136 (180)
T PF02737_consen  133 IGMH  136 (180)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8874

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=98.94  E-value=2.8e-09  Score=92.43  Aligned_cols=125  Identities=22%  Similarity=0.310  Sum_probs=76.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc------hhH-------HhhhhcccC-CceEEEEecCCCHHhhh
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT------PGV-------TADISHMDT-NAVVRGFLGQQQLEDAL  112 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~------~g~-------~~DL~~~~~-~~~v~~~~~t~d~~eal  112 (289)
                      |||+|||. |+||..+|..|+..|+  +|+.+|+++.      .|.       ..++..... ..+++.   ++|+++++
T Consensus         1 M~I~ViGl-GyvGl~~A~~lA~~G~--~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~---t~~~~~ai   74 (185)
T PF03721_consen    1 MKIAVIGL-GYVGLPLAAALAEKGH--QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRA---TTDIEEAI   74 (185)
T ss_dssp             -EEEEE---STTHHHHHHHHHHTTS--EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEE---ESEHHHHH
T ss_pred             CEEEEECC-CcchHHHHHHHHhCCC--EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchh---hhhhhhhh
Confidence            79999998 9999999999999998  9999999871      111       011211111 345554   45788889


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEe-cCCCcccHHHHHHHHHHhCCC
Q 022947          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLI-SNPVNSTVPIAAEVFKKVGTY  183 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~-tNPvd~~t~~~~~~~~~~~~~  183 (289)
                      ++||++|+|.+.|...+.      .-+...+.+.++.|.++. ++.+|++= |=|+...-.++..++.+.++.
T Consensus        75 ~~adv~~I~VpTP~~~~~------~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~  141 (185)
T PF03721_consen   75 KDADVVFICVPTPSDEDG------SPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGK  141 (185)
T ss_dssp             HH-SEEEE----EBETTT------SBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCT
T ss_pred             hccceEEEecCCCccccC------CccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhccc
Confidence            999999999998876532      124566777777777765 44443332 667777664555566665543

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.79  E-value=6.7e-08  Score=90.63  Aligned_cols=119  Identities=16%  Similarity=0.126  Sum_probs=82.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-chhHH-------h-hhhccc-----CCceEEEEecCCCHHhh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVT-------A-DISHMD-----TNAVVRGFLGQQQLEDA  111 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~~g~~-------~-DL~~~~-----~~~~v~~~~~t~d~~ea  111 (289)
                      .+||+|||+ |.+|+.+|..++..|+  +|+++|+++ .....       + .+....     ...++.   .+++++++
T Consensus         7 i~~VaVIGa-G~MG~giA~~~a~aG~--~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~---~~~~l~~a   80 (321)
T PRK07066          7 IKTFAAIGS-GVIGSGWVARALAHGL--DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLR---FVATIEAC   80 (321)
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhce---ecCCHHHH
Confidence            358999998 9999999999999998  999999986 11110       0 011010     012333   24578889


Q ss_pred             hCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEE
Q 022947          112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (289)
Q Consensus       112 l~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p-~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG  190 (289)
                      +++||+|+.++              .+|.++.+++...+.+++| ++  |+.||.+.....   +. .... -.|+|++|
T Consensus        81 v~~aDlViEav--------------pE~l~vK~~lf~~l~~~~~~~a--IlaSnTS~l~~s---~l-a~~~-~~p~R~~g  139 (321)
T PRK07066         81 VADADFIQESA--------------PEREALKLELHERISRAAKPDA--IIASSTSGLLPT---DF-YARA-THPERCVV  139 (321)
T ss_pred             hcCCCEEEECC--------------cCCHHHHHHHHHHHHHhCCCCe--EEEECCCccCHH---HH-HHhc-CCcccEEE
Confidence            99999999984              3578889999999999985 55  447888875432   22 2233 34578888


Q ss_pred             e
Q 022947          191 V  191 (289)
Q Consensus       191 ~  191 (289)
                      +
T Consensus       140 ~  140 (321)
T PRK07066        140 G  140 (321)
T ss_pred             E
Confidence            5

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.75  E-value=2.7e-08  Score=102.52  Aligned_cols=136  Identities=18%  Similarity=0.199  Sum_probs=93.0

Q ss_pred             ccccccccccccccCCC------CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-c--hhH--Hh----hhh
Q 022947           27 EGESSGLGRMDCRAKGG------SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGV--TA----DIS   91 (289)
Q Consensus        27 ~~~~~~~~~~~~~~~~~------~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~--~g~--~~----DL~   91 (289)
                      ||-..||.+..+.....      ....||+|||| |.+|..+|..++..|+  +|+|+|+++ .  .+.  ..    .+.
T Consensus       288 egi~aF~~~~~~~~~~~~~~~~~~~i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~  364 (715)
T PRK11730        288 ALVGIFLNDQYVKGKAKKLAKDAKPVKQAAVLGA-GIMGGGIAYQSASKGV--PVIMKDINQKALDLGMTEAAKLLNKQV  364 (715)
T ss_pred             HHHHHHHHHHHhcCCCCCCCCCccccceEEEECC-chhHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence            45555666655543321      13468999998 9999999999999998  999999987 1  111  11    111


Q ss_pred             ccc---------CCceEEEEecCCCHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEE
Q 022947           92 HMD---------TNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNL  161 (289)
Q Consensus        92 ~~~---------~~~~v~~~~~t~d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv  161 (289)
                      ...         ...+++   .++|+ +++++||+||.++              .++.++.+++..++++++ |++++  
T Consensus       365 ~~g~~~~~~~~~~~~~i~---~~~~~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~il--  424 (715)
T PRK11730        365 ERGKIDGAKMAGVLSSIR---PTLDY-AGFERVDVVVEAV--------------VENPKVKAAVLAEVEQKVREDTIL--  424 (715)
T ss_pred             HcCCCChhhHHHHHhCeE---EeCCH-HHhcCCCEEEecc--------------cCcHHHHHHHHHHHHhhCCCCcEE--
Confidence            110         012344   34677 7799999999984              358899999999999999 56655  


Q ss_pred             ecCCCcc-cHHHHHHHHHHhCCCCCCcEEEe
Q 022947          162 ISNPVNS-TVPIAAEVFKKVGTYDPKRLLGV  191 (289)
Q Consensus       162 ~tNPvd~-~t~~~~~~~~~~~~~~~~kviG~  191 (289)
                      +||.+.+ ++.++    . ... .|+|++|+
T Consensus       425 asNTSsl~i~~la----~-~~~-~p~r~~g~  449 (715)
T PRK11730        425 ASNTSTISISLLA----K-ALK-RPENFCGM  449 (715)
T ss_pred             EEcCCCCCHHHHH----h-hcC-CCccEEEE
Confidence            7999885 34332    2 333 46789997

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=98.74  E-value=4.2e-08  Score=101.09  Aligned_cols=118  Identities=19%  Similarity=0.224  Sum_probs=85.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-c--hhH--Hhhhhc----cc---------CCceEEEEecCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGV--TADISH----MD---------TNAVVRGFLGQQ  106 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~--~g~--~~DL~~----~~---------~~~~v~~~~~t~  106 (289)
                      ..+||+|||| |.+|..+|..++..|+  +|+|+|+++ .  .+.  +.++.+    ..         ...+++   .++
T Consensus       312 ~i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~---~~~  385 (714)
T TIGR02437       312 DVKQAAVLGA-GIMGGGIAYQSASKGT--PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGIT---PTL  385 (714)
T ss_pred             ccceEEEECC-chHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeE---EeC
Confidence            4569999998 9999999999999998  999999987 1  111  111111    00         012333   345


Q ss_pred             CHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCccc-HHHHHHHHHHhCCCC
Q 022947          107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNST-VPIAAEVFKKVGTYD  184 (289)
Q Consensus       107 d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~-t~~~~~~~~~~~~~~  184 (289)
                      |+ +++++||+||.++              .+++++.+++..++.+++ |++++  +||.+.+- +.++    . .+ -.
T Consensus       386 ~~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~il--asnTS~l~i~~ia----~-~~-~~  442 (714)
T TIGR02437       386 SY-AGFDNVDIVVEAV--------------VENPKVKAAVLAEVEQHVREDAIL--ASNTSTISISLLA----K-AL-KR  442 (714)
T ss_pred             CH-HHhcCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHHH----h-hc-CC
Confidence            77 7799999999984              358899999999999998 67766  89998853 3332    2 33 34


Q ss_pred             CCcEEEe
Q 022947          185 PKRLLGV  191 (289)
Q Consensus       185 ~~kviG~  191 (289)
                      |+|++|+
T Consensus       443 p~r~ig~  449 (714)
T TIGR02437       443 PENFCGM  449 (714)
T ss_pred             cccEEEE
Confidence            7889998

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=98.72  E-value=5e-08  Score=100.82  Aligned_cols=118  Identities=21%  Similarity=0.247  Sum_probs=84.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-c--hhH--Hhhhhcc----c---------CCceEEEEecCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGV--TADISHM----D---------TNAVVRGFLGQQ  106 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~--~g~--~~DL~~~----~---------~~~~v~~~~~t~  106 (289)
                      ...||+|||| |.+|+.+|..++..|+  +|+|+|+++ .  .+.  ..+..+.    .         ...+++   .++
T Consensus       334 ~i~~v~ViGa-G~MG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~---~~~  407 (737)
T TIGR02441       334 PVKTLAVLGA-GLMGAGIAQVSVDKGL--KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLT---PTL  407 (737)
T ss_pred             cccEEEEECC-CHhHHHHHHHHHhCCC--cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE---EeC
Confidence            3468999999 9999999999999998  999999987 1  111  1111110    0         012343   346


Q ss_pred             CHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcc-cHHHHHHHHHHhCCCC
Q 022947          107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS-TVPIAAEVFKKVGTYD  184 (289)
Q Consensus       107 d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~-~t~~~~~~~~~~~~~~  184 (289)
                      |+ +++++||+||.++              .+|.++.+++..++.+++ |++++  +||.+.+ ++.++    . .+ -.
T Consensus       408 ~~-~~~~~aDlViEAv--------------~E~l~~K~~vf~~l~~~~~~~~il--asNTSsl~i~~la----~-~~-~~  464 (737)
T TIGR02441       408 DY-SGFKNADMVIEAV--------------FEDLSLKHKVIKEVEAVVPPHCII--ASNTSALPIKDIA----A-VS-SR  464 (737)
T ss_pred             CH-HHhccCCeehhhc--------------cccHHHHHHHHHHHHhhCCCCcEE--EEcCCCCCHHHHH----h-hc-CC
Confidence            77 6899999999984              468999999999999998 57665  7999885 33332    2 23 34


Q ss_pred             CCcEEEe
Q 022947          185 PKRLLGV  191 (289)
Q Consensus       185 ~~kviG~  191 (289)
                      |+|++|+
T Consensus       465 p~r~ig~  471 (737)
T TIGR02441       465 PEKVIGM  471 (737)
T ss_pred             ccceEEE
Confidence            6889997

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.72  E-value=1.5e-07  Score=86.97  Aligned_cols=117  Identities=19%  Similarity=0.294  Sum_probs=80.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-c--hh--HHhh----hhccc---------CCceEEEEecCCCH
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PG--VTAD----ISHMD---------TNAVVRGFLGQQQL  108 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~--~g--~~~D----L~~~~---------~~~~v~~~~~t~d~  108 (289)
                      .||+|||+ |.+|..+|..++..|+  +|+++|+++ .  .+  ...+    +.+..         ...+++   .++|+
T Consensus         6 ~~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~---~~~~~   79 (286)
T PRK07819          6 QRVGVVGA-GQMGAGIAEVCARAGV--DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR---FTTDL   79 (286)
T ss_pred             cEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE---eeCCH
Confidence            48999998 9999999999999998  999999987 1  11  1111    11110         012333   24677


Q ss_pred             HhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC--CCcEEEEecCCCcccHHHHHHHHHHhCCCCCC
Q 022947          109 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC--PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK  186 (289)
Q Consensus       109 ~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~--p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~  186 (289)
                       +++++||+||.++              .+|.++.+++...+.+++  |++++  +||....-...    +..... .|+
T Consensus        80 -~~~~~~d~ViEav--------------~E~~~~K~~l~~~l~~~~~~~~~il--~snTS~~~~~~----la~~~~-~~~  137 (286)
T PRK07819         80 -GDFADRQLVIEAV--------------VEDEAVKTEIFAELDKVVTDPDAVL--ASNTSSIPIMK----LAAATK-RPG  137 (286)
T ss_pred             -HHhCCCCEEEEec--------------ccCHHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHH----HHhhcC-CCc
Confidence             7799999999984              357888999999999997  46555  68877754322    222333 456


Q ss_pred             cEEEe
Q 022947          187 RLLGV  191 (289)
Q Consensus       187 kviG~  191 (289)
                      |++|+
T Consensus       138 r~~g~  142 (286)
T PRK07819        138 RVLGL  142 (286)
T ss_pred             cEEEE
Confidence            78877

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.71  E-value=1.8e-07  Score=86.23  Aligned_cols=119  Identities=20%  Similarity=0.309  Sum_probs=77.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHh----hhhcc-----cC---------CceEEEEecCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTA----DISHM-----DT---------NAVVRGFLGQQ  106 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~----DL~~~-----~~---------~~~v~~~~~t~  106 (289)
                      .+||+|||+ |.+|+.+|..++..|+  +|+++|+++. ...+.    .+.+.     ..         ..++.   .++
T Consensus         3 ~~kIaViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---~~~   76 (287)
T PRK08293          3 IKNVTVAGA-GVLGSQIAFQTAFHGF--DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRIT---LTT   76 (287)
T ss_pred             ccEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeE---EeC
Confidence            359999998 9999999999999998  9999999861 11111    11110     00         11333   246


Q ss_pred             CHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CcEEEEecCCCcccHHHHHHHHHHhCCCCC
Q 022947          107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (289)
Q Consensus       107 d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p-~aiviv~tNPvd~~t~~~~~~~~~~~~~~~  185 (289)
                      |+++++++||+||++..              .+.+..+++.+.+.++++ ++++  ++|.+.....   ++.. ... .+
T Consensus        77 d~~~a~~~aDlVieavp--------------e~~~~k~~~~~~l~~~~~~~~ii--~sntSt~~~~---~~~~-~~~-~~  135 (287)
T PRK08293         77 DLAEAVKDADLVIEAVP--------------EDPEIKGDFYEELAKVAPEKTIF--ATNSSTLLPS---QFAE-ATG-RP  135 (287)
T ss_pred             CHHHHhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCCEE--EECcccCCHH---HHHh-hcC-Cc
Confidence            78788999999999852              346778888888888875 5544  5677665331   2222 222 35


Q ss_pred             CcEEEe
Q 022947          186 KRLLGV  191 (289)
Q Consensus       186 ~kviG~  191 (289)
                      +|++|+
T Consensus       136 ~r~vg~  141 (287)
T PRK08293        136 EKFLAL  141 (287)
T ss_pred             ccEEEE
Confidence            677775

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=98.70  E-value=2.2e-07  Score=91.53  Aligned_cols=123  Identities=15%  Similarity=0.162  Sum_probs=80.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch------hH-------HhhhhcccCCceEEEEecCCCHHhhh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP------GV-------TADISHMDTNAVVRGFLGQQQLEDAL  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~------g~-------~~DL~~~~~~~~v~~~~~t~d~~eal  112 (289)
                      +|||+|||+ |+||..+|..|+..|..-+|+.+|+++.+      +.       ..+|........+.   .++++.+++
T Consensus         1 ~m~I~ViG~-GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~---~t~~~~~~i   76 (473)
T PLN02353          1 MVKICCIGA-GYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLF---FSTDVEKHV   76 (473)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEE---EEcCHHHHH
Confidence            579999998 99999999999988643489999998721      11       01111100011233   356777889


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEe--cCCCcccHHHH
Q 022947          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI--SNPVNSTVPIA  173 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~--tNPvd~~t~~~  173 (289)
                      ++||++|+|.++|...+....+ -.-++..+.+.++.|.++.++..+++.  |-|..+.-.+.
T Consensus        77 ~~advi~I~V~TP~~~~g~~~~-~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~  138 (473)
T PLN02353         77 AEADIVFVSVNTPTKTRGLGAG-KAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIE  138 (473)
T ss_pred             hcCCEEEEEeCCCCCCCCCcCC-CCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHH
Confidence            9999999999999754210000 023566788888888888755444443  77887754443

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.70  E-value=1.4e-07  Score=97.36  Aligned_cols=117  Identities=21%  Similarity=0.328  Sum_probs=83.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHH-hCCCccEEEEEeCCC-c--hh--HHhhhhc----cc---------CCceEEEEecCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMK-INPLVSVLHLYDVVN-T--PG--VTADISH----MD---------TNAVVRGFLGQQ  106 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~-~~g~~~eI~LvD~~~-~--~g--~~~DL~~----~~---------~~~~v~~~~~t~  106 (289)
                      .+||+|||| |.+|..+|..++ ..|+  +|+|+|+++ .  .+  .+.+..+    ..         ...+++.   ++
T Consensus       309 i~~v~ViGa-G~mG~giA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~---~~  382 (708)
T PRK11154        309 VNKVGVLGG-GLMGGGIAYVTATKAGL--PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISG---TT  382 (708)
T ss_pred             ccEEEEECC-chhhHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEE---eC
Confidence            479999998 999999999988 7798  999999986 1  11  1111111    00         0123443   46


Q ss_pred             CHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCccc-HHHHHHHHHHhCCCC
Q 022947          107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNST-VPIAAEVFKKVGTYD  184 (289)
Q Consensus       107 d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~-t~~~~~~~~~~~~~~  184 (289)
                      |+ +++++||+||.++              .+|.++.+++..++++++ |++++  +||.+.+. +.++    . .. -.
T Consensus       383 ~~-~~~~~aDlViEav--------------~E~~~~K~~v~~~le~~~~~~~il--asnTS~l~i~~la----~-~~-~~  439 (708)
T PRK11154        383 DY-RGFKHADVVIEAV--------------FEDLALKQQMVAEVEQNCAPHTIF--ASNTSSLPIGQIA----A-AA-AR  439 (708)
T ss_pred             Ch-HHhccCCEEeecc--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHHH----H-hc-Cc
Confidence            77 7899999999984              468999999999999998 67766  79998854 3332    2 23 34


Q ss_pred             CCcEEEe
Q 022947          185 PKRLLGV  191 (289)
Q Consensus       185 ~~kviG~  191 (289)
                      |+|++|+
T Consensus       440 p~r~ig~  446 (708)
T PRK11154        440 PEQVIGL  446 (708)
T ss_pred             ccceEEE
Confidence            6788887

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=98.65  E-value=1.3e-07  Score=97.23  Aligned_cols=118  Identities=19%  Similarity=0.292  Sum_probs=83.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHH-hCCCccEEEEEeCCC-c--hh--HHhh-hhcc---c---------CCceEEEEecC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMK-INPLVSVLHLYDVVN-T--PG--VTAD-ISHM---D---------TNAVVRGFLGQ  105 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~-~~g~~~eI~LvD~~~-~--~g--~~~D-L~~~---~---------~~~~v~~~~~t  105 (289)
                      +.+||+|||| |.+|+.+|..++ ..|+  +|+|+|+++ .  .+  .+.+ +...   .         ...+++   .+
T Consensus       303 ~i~~v~ViGa-G~mG~~iA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~---~~  376 (699)
T TIGR02440       303 KIKKVGILGG-GLMGGGIASVTATKAGI--PVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALIT---GT  376 (699)
T ss_pred             cccEEEEECC-cHHHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeE---Ee
Confidence            3468999998 999999999888 4798  999999987 1  11  1111 1110   0         012343   34


Q ss_pred             CCHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcc-cHHHHHHHHHHhCCC
Q 022947          106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS-TVPIAAEVFKKVGTY  183 (289)
Q Consensus       106 ~d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~-~t~~~~~~~~~~~~~  183 (289)
                      +|+ +++++||+||.++              .++.++.+++..++.+++ |++++  +||.+.+ ++.++    . .. -
T Consensus       377 ~~~-~~~~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~il--asnTS~l~i~~la----~-~~-~  433 (699)
T TIGR02440       377 TDY-RGFKDVDIVIEAV--------------FEDLALKHQMVKDIEQECAAHTIF--ASNTSSLPIGQIA----A-AA-S  433 (699)
T ss_pred             CCh-HHhccCCEEEEec--------------cccHHHHHHHHHHHHhhCCCCcEE--EeCCCCCCHHHHH----H-hc-C
Confidence            677 6899999999984              357899999999999999 56655  7999885 44332    2 22 3


Q ss_pred             CCCcEEEe
Q 022947          184 DPKRLLGV  191 (289)
Q Consensus       184 ~~~kviG~  191 (289)
                      .|+|++|+
T Consensus       434 ~p~r~~g~  441 (699)
T TIGR02440       434 RPENVIGL  441 (699)
T ss_pred             CcccEEEE
Confidence            56789987

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=98.62  E-value=2.7e-07  Score=84.93  Aligned_cols=117  Identities=17%  Similarity=0.295  Sum_probs=79.6

Q ss_pred             EEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEE-EEecCCCHHhhhCCCCEEEEcCCCCCCC
Q 022947           50 AVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLEDALTGMDIVIIPAGVPRKP  128 (289)
Q Consensus        50 ~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~-~~~~t~d~~eal~~aDiVIitag~~~~~  128 (289)
                      .|+||+||+|++++..|+.+|...+|..+|+.+......++........+. .+....++.++++++|+||++|+...-.
T Consensus         1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~~~   80 (280)
T PF01073_consen    1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVPPW   80 (280)
T ss_pred             CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCcccccc
Confidence            389999999999999999999555999999876322211222221110111 1223356889999999999998754333


Q ss_pred             C-CchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcc
Q 022947          129 G-MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS  168 (289)
Q Consensus       129 g-~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~  168 (289)
                      + ..+..+...|+...+.+++...+..-+.+  |+|..+++
T Consensus        81 ~~~~~~~~~~vNV~GT~nvl~aa~~~~Vkrl--VytSS~~v  119 (280)
T PF01073_consen   81 GDYPPEEYYKVNVDGTRNVLEAARKAGVKRL--VYTSSISV  119 (280)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHcCCCEE--EEEcCcce
Confidence            3 35667889999999999999998764433  34555444

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.60  E-value=7.7e-07  Score=81.70  Aligned_cols=118  Identities=21%  Similarity=0.366  Sum_probs=77.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc---hhH-----H-hhhhccc---------CCceEEEEecCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGV-----T-ADISHMD---------TNAVVRGFLGQQQ  107 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~---~g~-----~-~DL~~~~---------~~~~v~~~~~t~d  107 (289)
                      .+||+|||+ |.+|..++..++..|+  +|+++|+++.   .+.     . .++....         ...+++.   ++|
T Consensus         3 ~~kI~VIG~-G~mG~~ia~~la~~g~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~---~~~   76 (282)
T PRK05808          3 IQKIGVIGA-GTMGNGIAQVCAVAGY--DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG---TTD   76 (282)
T ss_pred             ccEEEEEcc-CHHHHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCC
Confidence            458999998 9999999999999998  9999999872   111     0 0111110         0113332   456


Q ss_pred             HHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CcEEEEecCCCcccHHHHHHHHHHhCCCCCC
Q 022947          108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDPK  186 (289)
Q Consensus       108 ~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p-~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~  186 (289)
                      + +++++||+||+++              ..+....+++.+.+.++++ ++++  +||-..+-...+    ....+. +.
T Consensus        77 ~-~~~~~aDlVi~av--------------~e~~~~k~~~~~~l~~~~~~~~il--~s~ts~~~~~~l----a~~~~~-~~  134 (282)
T PRK05808         77 L-DDLKDADLVIEAA--------------TENMDLKKKIFAQLDEIAKPEAIL--ATNTSSLSITEL----AAATKR-PD  134 (282)
T ss_pred             H-HHhccCCeeeecc--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHH----HHhhCC-Cc
Confidence            6 5689999999985              2356677788888998884 6655  677777544222    223333 45


Q ss_pred             cEEEe
Q 022947          187 RLLGV  191 (289)
Q Consensus       187 kviG~  191 (289)
                      |++|+
T Consensus       135 r~ig~  139 (282)
T PRK05808        135 KVIGM  139 (282)
T ss_pred             ceEEe
Confidence            78886

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=98.58  E-value=1.7e-06  Score=81.59  Aligned_cols=169  Identities=13%  Similarity=0.016  Sum_probs=102.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhc---ccCCceEEEEec----CCCHHhhhCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISH---MDTNAVVRGFLG----QQQLEDALTGM  115 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~---~~~~~~v~~~~~----t~d~~eal~~a  115 (289)
                      +++||.|+||+|++|++++..|+..|.  +|+.+|+...  .....++..   ......+..+.+    ..++.+.++++
T Consensus        14 ~~~~vlVtGatGfiG~~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~   91 (348)
T PRK15181         14 APKRWLITGVAGFIGSGLLEELLFLNQ--TVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNV   91 (348)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCC
Confidence            357999999999999999999999987  9999997541  101111110   000112222221    12344567899


Q ss_pred             CEEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCC------CcccHHHHHHHHHHhCCCCCCc
Q 022947          116 DIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP------VNSTVPIAAEVFKKVGTYDPKR  187 (289)
Q Consensus       116 DiVIitag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNP------vd~~t~~~~~~~~~~~~~~~~k  187 (289)
                      |+||++|+....+  .+...+....|+....++.+.+++....- ++.+|..      .+..  .     .+.....|..
T Consensus        92 d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~-~v~~SS~~vyg~~~~~~--~-----~e~~~~~p~~  163 (348)
T PRK15181         92 DYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSS-FTYAASSSTYGDHPDLP--K-----IEERIGRPLS  163 (348)
T ss_pred             CEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCe-EEEeechHhhCCCCCCC--C-----CCCCCCCCCC
Confidence            9999999864322  12334567889999999999998875443 3333311      1100  0     0011123445


Q ss_pred             EEEeeeccHHHHHHHHHHHcCCCCccee-eeEEcccC
Q 022947          188 LLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (289)
Q Consensus       188 viG~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg  223 (289)
                      .+|.+.+...++....++..+++...++ ..|.|.+.
T Consensus       164 ~Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~~  200 (348)
T PRK15181        164 PYAVTKYVNELYADVFARSYEFNAIGLRYFNVFGRRQ  200 (348)
T ss_pred             hhhHHHHHHHHHHHHHHHHhCCCEEEEEecceeCcCC
Confidence            6777665555555555677788888887 45889753

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=98.57  E-value=7.6e-07  Score=86.93  Aligned_cols=177  Identities=14%  Similarity=0.056  Sum_probs=103.1

Q ss_pred             cccccccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhC
Q 022947           34 GRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT  113 (289)
Q Consensus        34 ~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~  113 (289)
                      +|.+--++  .+.|||.|+||+||||++++..|+.+|+  +|+.+|+... +....+.+......+..+.. +-..+.+.
T Consensus       110 ~~~~~~~~--~~~mkILVTGatGFIGs~Lv~~Ll~~G~--~V~~ldr~~~-~~~~~~~~~~~~~~~~~~~~-Di~~~~~~  183 (436)
T PLN02166        110 GRVPVGIG--RKRLRIVVTGGAGFVGSHLVDKLIGRGD--EVIVIDNFFT-GRKENLVHLFGNPRFELIRH-DVVEPILL  183 (436)
T ss_pred             CCCCcccc--cCCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCC-ccHhHhhhhccCCceEEEEC-cccccccc
Confidence            55555555  4568999999999999999999999998  9999997531 11011111100122332221 11234578


Q ss_pred             CCCEEEEcCCCCC--CCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC------c-ccHHHHHHHHHH-hCCC
Q 022947          114 GMDIVIIPAGVPR--KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV------N-STVPIAAEVFKK-VGTY  183 (289)
Q Consensus       114 ~aDiVIitag~~~--~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPv------d-~~t~~~~~~~~~-~~~~  183 (289)
                      ++|+||++|+...  ....+..+++..|+....++++.+++.+.  .+|++|.-.      + .++    |-.+. ..-.
T Consensus       184 ~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~--r~V~~SS~~VYg~~~~~p~~----E~~~~~~~p~  257 (436)
T PLN02166        184 EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--RFLLTSTSEVYGDPLEHPQK----ETYWGNVNPI  257 (436)
T ss_pred             CCCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEECcHHHhCCCCCCCCC----ccccccCCCC
Confidence            9999999997532  11223456788999999999999988753  455554311      0 000    00000 0011


Q ss_pred             CCCcEEEeeeccHHHHHHHHHHHcCCCCcceee-eEEccc
Q 022947          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDV-PVVGGH  222 (289)
Q Consensus       184 ~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~-~V~G~h  222 (289)
                      .+...+|.+.+...++-...++..+++..-++. .|+|.+
T Consensus       258 ~p~s~Yg~SK~~aE~~~~~y~~~~~l~~~ilR~~~vYGp~  297 (436)
T PLN02166        258 GERSCYDEGKRTAETLAMDYHRGAGVEVRIARIFNTYGPR  297 (436)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHhCCCeEEEEEccccCCC
Confidence            223445655544444444455666776666663 478865

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=98.55  E-value=1e-06  Score=78.11  Aligned_cols=100  Identities=21%  Similarity=0.174  Sum_probs=64.1

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhccc----CCceEEEEecCCCHHhhhCCCCEEEE
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMD----TNAVVRGFLGQQQLEDALTGMDIVII  120 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~----~~~~v~~~~~t~d~~eal~~aDiVIi  120 (289)
                      |||+|||++|.+|++++..|+..|+  +|.++|+++.  .....+..+..    ....+..   + +.+++++++|+||+
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~--~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~---~-~~~ea~~~aDvVil   74 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGN--KIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTG---A-DNAEAAKRADVVIL   74 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCC--EEEEEEcCHHHHHHHHHHHHhhccccCCCceEEE---e-ChHHHHhcCCEEEE
Confidence            6899998449999999999999886  9999998762  22222222111    0111221   1 34578999999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcc
Q 022947          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS  168 (289)
Q Consensus       121 tag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~  168 (289)
                      +..                ...+.++++.+....++.+|+-++||.+.
T Consensus        75 avp----------------~~~~~~~l~~l~~~l~~~vvI~~~ngi~~  106 (219)
T TIGR01915        75 AVP----------------WDHVLKTLESLRDELSGKLVISPVVPLAS  106 (219)
T ss_pred             ECC----------------HHHHHHHHHHHHHhccCCEEEEeccCcee
Confidence            852                12234444455444445678888999864

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=98.54  E-value=1.1e-07  Score=84.13  Aligned_cols=120  Identities=21%  Similarity=0.323  Sum_probs=85.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-c-----hhHHhhhhccc-----------------CCceEEE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T-----PGVTADISHMD-----------------TNAVVRG  101 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~-----~g~~~DL~~~~-----------------~~~~v~~  101 (289)
                      +.+.|+|+|| |.+|+.+|+..+..|+  .|.|+|.++ .     ++...-+.+..                 ...+++ 
T Consensus        10 ~~~~V~ivGa-G~MGSGIAQv~a~sg~--~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~-   85 (298)
T KOG2304|consen   10 EIKNVAIVGA-GQMGSGIAQVAATSGL--NVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIK-   85 (298)
T ss_pred             cccceEEEcc-cccchhHHHHHHhcCC--ceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHH-
Confidence            4568999998 9999999999999999  999999987 1     11111111110                 011222 


Q ss_pred             EecCCCHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcc-cHHHHHHHHHHh
Q 022947          102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS-TVPIAAEVFKKV  180 (289)
Q Consensus       102 ~~~t~d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~-~t~~~~~~~~~~  180 (289)
                        .++|...++.|||+||.+              ..+|+++.+++.+.+.+.|+...++ .||.+.. ++.++     ..
T Consensus        86 --~~tnv~~~v~dadliiEA--------------ivEn~diK~~lF~~l~~~ak~~~il-~tNTSSl~lt~ia-----~~  143 (298)
T KOG2304|consen   86 --TSTNVSDAVSDADLIIEA--------------IVENLDIKRKLFKDLDKIAKSSTIL-ATNTSSLSLTDIA-----SA  143 (298)
T ss_pred             --HcCCHHHhhhhhHHHHHH--------------HHHhHHHHHHHHHHHHhhcccceEE-eecccceeHHHHH-----hh
Confidence              245778889999999876              4679999999999999999544333 6999875 44433     12


Q ss_pred             CCCCCCcEEEe
Q 022947          181 GTYDPKRLLGV  191 (289)
Q Consensus       181 ~~~~~~kviG~  191 (289)
                      . -+|.|+.|+
T Consensus       144 ~-~~~srf~Gl  153 (298)
T KOG2304|consen  144 T-QRPSRFAGL  153 (298)
T ss_pred             c-cChhhhcee
Confidence            2 456788888

>PLN00198 anthocyanidin reductase; Provisional

Probab=98.53  E-value=3.7e-06  Score=78.61  Aligned_cols=175  Identities=15%  Similarity=0.062  Sum_probs=98.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-chhHHhhhhcccCCceEEEEe----cCCCHHhhhCCCCEEEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFL----GQQQLEDALTGMDIVII  120 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~~g~~~DL~~~~~~~~v~~~~----~t~d~~eal~~aDiVIi  120 (289)
                      ++||.|+||+|++|++++..|+..|.  +|++++++. ......++.......++..+.    ...++.+.++++|+||+
T Consensus         9 ~~~vlItG~~GfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih   86 (338)
T PLN00198          9 KKTACVIGGTGFLASLLIKLLLQKGY--AVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDLVFH   86 (338)
T ss_pred             CCeEEEECCchHHHHHHHHHHHHCCC--EEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCEEEE
Confidence            56899999999999999999999997  887777654 211111111110011222221    12235567889999999


Q ss_pred             cCCCCCCCCCc-hhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCccc-------HHHHHHHHH-----HhCCCCCCc
Q 022947          121 PAGVPRKPGMT-RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNST-------VPIAAEVFK-----KVGTYDPKR  187 (289)
Q Consensus       121 tag~~~~~g~~-r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~-------t~~~~~~~~-----~~~~~~~~k  187 (289)
                      +|+.......+ ..+++..|+.....+++.+.+...-..++++|.-...-       .....|-.+     .....+|..
T Consensus        87 ~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~~~~~p~~  166 (338)
T PLN00198         87 VATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTSEKPPTW  166 (338)
T ss_pred             eCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhhhcCCccc
Confidence            99853221112 23456789999999999988764222444443311000       000000000     000123444


Q ss_pred             EEEeeeccHHHHHHHHHHHcCCCCccee-eeEEccc
Q 022947          188 LLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (289)
Q Consensus       188 viG~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~h  222 (289)
                      .+|.+.+...++....++..+++...++ ..|.|.+
T Consensus       167 ~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~  202 (338)
T PLN00198        167 GYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPS  202 (338)
T ss_pred             hhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCC
Confidence            5565554444555556677788777777 4488875

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=98.53  E-value=4.5e-08  Score=90.25  Aligned_cols=163  Identities=19%  Similarity=0.172  Sum_probs=93.7

Q ss_pred             EEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCceEEE--------EecCCCHHhhhC--CCC
Q 022947           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRG--------FLGQQQLEDALT--GMD  116 (289)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~--------~~~t~d~~eal~--~aD  116 (289)
                      |.|+||+|++|+.++..|+..+. .+|+++|+++  ......++.......+++.        +.+...+..+++  +.|
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p-~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pd   79 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGP-KKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPD   79 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB--SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-S
T ss_pred             CEEEccccHHHHHHHHHHHhcCC-CeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCC
Confidence            67999999999999999988875 5899999998  2223344421111111211        111123456677  999


Q ss_pred             EEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec----CCCcccHHHHHHHHHHhCCCCCCcEEE
Q 022947          117 IVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS----NPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (289)
Q Consensus       117 iVIitag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t----NPvd~~t~~~~~~~~~~~~~~~~kviG  190 (289)
                      +||++|....-+  ...-.+.+..|+-..+++++...++..+-+|.+.|    ||.++|-                    
T Consensus        80 iVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv~PtnvmG--------------------  139 (293)
T PF02719_consen   80 IVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAVNPTNVMG--------------------  139 (293)
T ss_dssp             EEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCSS--SHHH--------------------
T ss_pred             EEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCCcHHH--------------------
Confidence            999998753222  22346678899999999999999998887777775    5666653                    


Q ss_pred             eeeccHHHHHHHHHHHc---CCCCccee-eeEEcccCCCeeeeecccc
Q 022947          191 VTMLDVVRANTFVAEVL---GLDPREVD-VPVVGGHAGVTILPLLSQV  234 (289)
Q Consensus       191 ~t~lds~R~~~~lA~~l---~v~~~~V~-~~V~G~hg~~~~vp~~S~~  234 (289)
                      .|..=..++-...+...   +.....|+ +-|+|..|  |.+|.|...
T Consensus       140 atKrlaE~l~~~~~~~~~~~~t~f~~VRFGNVlgS~G--SVip~F~~Q  185 (293)
T PF02719_consen  140 ATKRLAEKLVQAANQYSGNSDTKFSSVRFGNVLGSRG--SVIPLFKKQ  185 (293)
T ss_dssp             HHHHHHHHHHHHHCCTSSSS--EEEEEEE-EETTGTT--SCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhCCCCCcEEEEEEecceecCCC--cHHHHHHHH
Confidence            22111222222222222   12234455 66999998  589988753

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.52  E-value=8.4e-07  Score=81.84  Aligned_cols=117  Identities=15%  Similarity=0.265  Sum_probs=75.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhh--------hh---cccC---------CceEEEEecC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTAD--------IS---HMDT---------NAVVRGFLGQ  105 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~D--------L~---~~~~---------~~~v~~~~~t  105 (289)
                      +||+|||+ |.+|..++..++..|+  +|+++|+++. .....+        +.   +...         ..++.   .+
T Consensus         4 ~~I~ViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~---~~   77 (291)
T PRK06035          4 KVIGVVGS-GVMGQGIAQVFARTGY--DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIR---TS   77 (291)
T ss_pred             cEEEEECc-cHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcE---ee
Confidence            58999998 9999999999999998  9999999872 111111        11   1000         01222   23


Q ss_pred             CCHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CcEEEEecCCCcccHHHHHHHHHHhCCCC
Q 022947          106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (289)
Q Consensus       106 ~d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p-~aiviv~tNPvd~~t~~~~~~~~~~~~~~  184 (289)
                      +++ +++++||+||++..              .+.+..+++.+.+.++++ ++++  +||.......   ++.. .. -.
T Consensus        78 ~~~-~~~~~aDlVieav~--------------e~~~~k~~~~~~l~~~~~~~~il--~S~tsg~~~~---~la~-~~-~~  135 (291)
T PRK06035         78 TSY-ESLSDADFIVEAVP--------------EKLDLKRKVFAELERNVSPETII--ASNTSGIMIA---EIAT-AL-ER  135 (291)
T ss_pred             CCH-HHhCCCCEEEEcCc--------------CcHHHHHHHHHHHHhhCCCCeEE--EEcCCCCCHH---HHHh-hc-CC
Confidence            466 67999999999852              245667788888888874 5655  4666654332   2222 22 23


Q ss_pred             CCcEEEe
Q 022947          185 PKRLLGV  191 (289)
Q Consensus       185 ~~kviG~  191 (289)
                      +.|++|+
T Consensus       136 ~~r~ig~  142 (291)
T PRK06035        136 KDRFIGM  142 (291)
T ss_pred             cccEEEE
Confidence            5678887

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=98.45  E-value=5.5e-06  Score=77.91  Aligned_cols=176  Identities=14%  Similarity=0.039  Sum_probs=97.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch-hHHhhhhcccCCce-EE-EEecCCCHHhhhCC--CCEEE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTNAV-VR-GFLGQQQLEDALTG--MDIVI  119 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~-g~~~DL~~~~~~~~-v~-~~~~t~d~~eal~~--aDiVI  119 (289)
                      +.++|.|+||+|++|++++..|++.|.  +|+.+|++... ....+......... +. ......++.+.+++  .|+||
T Consensus         3 ~~k~ilItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi   80 (349)
T TIGR02622         3 QGKKVLVTGHTGFKGSWLSLWLLELGA--EVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVF   80 (349)
T ss_pred             CCCEEEEECCCChhHHHHHHHHHHCCC--EEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEE
Confidence            457999999999999999999999997  89999987621 11111111110111 11 11111234445554  59999


Q ss_pred             EcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeeccHH
Q 022947          120 IPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVV  197 (289)
Q Consensus       120 itag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t~lds~  197 (289)
                      ++|+.+...  ..+....+..|+.....+++.+.+.+....++++|...-.-..-...-+.+....++...+|.+..-..
T Consensus        81 h~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~~e~~~~~p~~~Y~~sK~~~e  160 (349)
T TIGR02622        81 HLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEWVWGYRETDPLGGHDPYSSSKACAE  160 (349)
T ss_pred             ECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCCCCCCccCCCCCCCCcchhHHHHHH
Confidence            999854221  112345678899999999998877653334555554210000000000000112344556676655444


Q ss_pred             HHHHHHHHHc-------CCCCccee-eeEEccc
Q 022947          198 RANTFVAEVL-------GLDPREVD-VPVVGGH  222 (289)
Q Consensus       198 R~~~~lA~~l-------~v~~~~V~-~~V~G~h  222 (289)
                      ++-..+++.+       +++...++ ..|+|.+
T Consensus       161 ~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~  193 (349)
T TIGR02622       161 LVIASYRSSFFGVANFHGIKIASARAGNVIGGG  193 (349)
T ss_pred             HHHHHHHHHhhcccccCCCcEEEEccCcccCCC
Confidence            5555555554       56666666 4577764

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=98.45  E-value=2.5e-06  Score=79.75  Aligned_cols=120  Identities=18%  Similarity=0.117  Sum_probs=83.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-c-h--hHHhhhhcccCCceEEEE----ecCCCHHhhhCCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T-P--GVTADISHMDTNAVVRGF----LGQQQLEDALTGMD  116 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~-~--g~~~DL~~~~~~~~v~~~----~~t~d~~eal~~aD  116 (289)
                      ..++|+|+||+||||+.+...|+++|+  +|+-.=+++ . +  ....+|....  .++..+    ...+.+.+++++||
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY--~V~gtVR~~~~~k~~~~L~~l~~a~--~~l~l~~aDL~d~~sf~~ai~gcd   80 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGY--TVRGTVRDPEDEKKTEHLRKLEGAK--ERLKLFKADLLDEGSFDKAIDGCD   80 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCC--EEEEEEcCcchhhhHHHHHhcccCc--ccceEEeccccccchHHHHHhCCC
Confidence            457999999999999999999999999  676665554 1 1  2344555332  122322    22346789999999


Q ss_pred             EEEEcCCCCCCCCC-chhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCccc
Q 022947          117 IVIIPAGVPRKPGM-TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNST  169 (289)
Q Consensus       117 iVIitag~~~~~g~-~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~  169 (289)
                      .||++|....-... .-.+++.-.++..+.+.+.++++. ...=+|+|+....+
T Consensus        81 gVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~-sVkrvV~TSS~aAv  133 (327)
T KOG1502|consen   81 GVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTK-SVKRVVYTSSTAAV  133 (327)
T ss_pred             EEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccC-CcceEEEeccHHHh
Confidence            99999865322222 234688899999999999999987 44444566655433

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=98.44  E-value=7.5e-07  Score=74.99  Aligned_cols=94  Identities=26%  Similarity=0.344  Sum_probs=63.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhccc--------CCceEEEEecCCCHHhhhCCCCEEE
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--------TNAVVRGFLGQQQLEDALTGMDIVI  119 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~--------~~~~v~~~~~t~d~~eal~~aDiVI  119 (289)
                      ||+|+|| |..|.++|..|+.+|+  +|.|+++++.....+.-.+..        ....+..   ++|+++++++||+||
T Consensus         1 KI~ViGa-G~~G~AlA~~la~~g~--~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~---t~dl~~a~~~ad~Ii   74 (157)
T PF01210_consen    1 KIAVIGA-GNWGTALAALLADNGH--EVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA---TTDLEEALEDADIII   74 (157)
T ss_dssp             EEEEESS-SHHHHHHHHHHHHCTE--EEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE---ESSHHHHHTT-SEEE
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCC--EEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc---ccCHHHHhCcccEEE
Confidence            8999999 9999999999999997  999999876211111111211        0123332   568999999999999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEec
Q 022947          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS  163 (289)
Q Consensus       120 itag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~t  163 (289)
                      ++.  |              ....++++++++.+- ++..+++++
T Consensus        75 iav--P--------------s~~~~~~~~~l~~~l~~~~~ii~~~  103 (157)
T PF01210_consen   75 IAV--P--------------SQAHREVLEQLAPYLKKGQIIISAT  103 (157)
T ss_dssp             E-S-----------------GGGHHHHHHHHTTTSHTT-EEEETS
T ss_pred             ecc--c--------------HHHHHHHHHHHhhccCCCCEEEEec
Confidence            984  2              334678888888887 455555443

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.44  E-value=1.1e-06  Score=80.96  Aligned_cols=101  Identities=22%  Similarity=0.291  Sum_probs=65.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHh-----hhhc----ccC--------CceEEEEecCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTA-----DISH----MDT--------NAVVRGFLGQQQ  107 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~-----DL~~----~~~--------~~~v~~~~~t~d  107 (289)
                      .+||+|||+ |.+|..+|..++..|+  +|+++|+++. .....     .+..    ...        ..++..   +++
T Consensus         4 ~~kI~vIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~   77 (292)
T PRK07530          4 IKKVGVIGA-GQMGNGIAHVCALAGY--DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST---ATD   77 (292)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe---eCC
Confidence            468999998 9999999999999998  9999999861 11111     0100    000        012332   346


Q ss_pred             HHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCccc
Q 022947          108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNST  169 (289)
Q Consensus       108 ~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~  169 (289)
                      + +++++||+||++..              .+....+.+.+.+.+++ |++++  +||.+.+-
T Consensus        78 ~-~~~~~aD~Vieavp--------------e~~~~k~~~~~~l~~~~~~~~ii--~s~ts~~~  123 (292)
T PRK07530         78 L-EDLADCDLVIEAAT--------------EDETVKRKIFAQLCPVLKPEAIL--ATNTSSIS  123 (292)
T ss_pred             H-HHhcCCCEEEEcCc--------------CCHHHHHHHHHHHHhhCCCCcEE--EEcCCCCC
Confidence            6 57899999999852              23344556667787776 56655  36666543

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=98.43  E-value=1.2e-06  Score=87.07  Aligned_cols=120  Identities=23%  Similarity=0.313  Sum_probs=78.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc---hhH--Hh----hhhccc---------CCceEEEEecCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGV--TA----DISHMD---------TNAVVRGFLGQQ  106 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~---~g~--~~----DL~~~~---------~~~~v~~~~~t~  106 (289)
                      +.+||+|||+ |.+|+.+|..++..|+  +|+++|+++.   .+.  ..    .+....         ...+++.   ++
T Consensus         4 ~~~kV~VIGa-G~MG~gIA~~la~aG~--~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~   77 (503)
T TIGR02279         4 NVVTVAVIGA-GAMGAGIAQVAASAGH--QVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIP---VT   77 (503)
T ss_pred             CccEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEE---eC
Confidence            4468999998 9999999999999998  9999999871   110  00    111110         0122332   45


Q ss_pred             CHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCC
Q 022947          107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK  186 (289)
Q Consensus       107 d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~  186 (289)
                      ++ +++++||+||.+.              .++..+.+.+...+.+++|...+ ++||.+.+-..   +... .. -.|.
T Consensus        78 ~~-~~l~~aDlVIEav--------------~E~~~vK~~vf~~l~~~~~~~~I-lasnTStl~i~---~iA~-~~-~~p~  136 (503)
T TIGR02279        78 DL-HALADAGLVIEAI--------------VENLEVKKALFAQLEELCPADTI-IASNTSSLSIT---AIAA-GL-ARPE  136 (503)
T ss_pred             CH-HHhCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCeE-EEECCCCCCHH---HHHH-hc-Cccc
Confidence            67 6789999999984              34677888888889998854433 36888775432   1112 22 2356


Q ss_pred             cEEEe
Q 022947          187 RLLGV  191 (289)
Q Consensus       187 kviG~  191 (289)
                      |++|+
T Consensus       137 r~~G~  141 (503)
T TIGR02279       137 RVAGL  141 (503)
T ss_pred             ceEEE
Confidence            77776

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.42  E-value=1.1e-06  Score=80.98  Aligned_cols=100  Identities=20%  Similarity=0.239  Sum_probs=65.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHH----hhhhccc-------------CCceEEEEecCCCH
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVT----ADISHMD-------------TNAVVRGFLGQQQL  108 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~----~DL~~~~-------------~~~~v~~~~~t~d~  108 (289)
                      +||+|||+ |.+|..+|..|+..|+  +|+++|+++. ....    .++....             ....+.   .++++
T Consensus         2 ~~V~VIG~-G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~---~~~~~   75 (288)
T PRK09260          2 EKLVVVGA-GVMGRGIAYVFAVSGF--QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLS---YSLDL   75 (288)
T ss_pred             cEEEEECc-cHHHHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE---EeCcH
Confidence            48999999 9999999999999998  9999999871 1111    1110000             011233   24577


Q ss_pred             HhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcc
Q 022947          109 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS  168 (289)
Q Consensus       109 ~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~  168 (289)
                      ++++++||+||.+..              .+..+.+.+...+.+++ |++++  ++|.+.+
T Consensus        76 ~~~~~~aD~Vi~avp--------------e~~~~k~~~~~~l~~~~~~~~il--~~~tSt~  120 (288)
T PRK09260         76 KAAVADADLVIEAVP--------------EKLELKKAVFETADAHAPAECYI--ATNTSTM  120 (288)
T ss_pred             HHhhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCcEE--EEcCCCC
Confidence            789999999999852              23455566666777777 45544  4555543

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=98.42  E-value=1.7e-06  Score=85.43  Aligned_cols=167  Identities=20%  Similarity=0.220  Sum_probs=108.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEE----ecCCCHHhhhCC--CC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGF----LGQQQLEDALTG--MD  116 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~----~~t~d~~eal~~--aD  116 (289)
                      ..++|.|+||+|++|+.+...++..+. .+|+++|.++.  .....+|.......+++.+    .+.+.+++++++  .|
T Consensus       249 ~gK~vLVTGagGSiGsel~~qil~~~p-~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd  327 (588)
T COG1086         249 TGKTVLVTGGGGSIGSELCRQILKFNP-KEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVD  327 (588)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHhcCC-CEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCc
Confidence            356899999999999999988888764 59999999982  2233444442112233322    122345677888  99


Q ss_pred             EEEEcCCCCCCCC--CchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec----CCCcccHHHHHHHHHHhCCCCCCcEEE
Q 022947          117 IVIIPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS----NPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (289)
Q Consensus       117 iVIitag~~~~~g--~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t----NPvd~~t~~~~~~~~~~~~~~~~kviG  190 (289)
                      +|+++|....-|-  .+-.+-...|+-..+++++...++.-+.+|++.|    ||.|+|                    |
T Consensus       328 ~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~PtNvm--------------------G  387 (588)
T COG1086         328 IVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPTNVM--------------------G  387 (588)
T ss_pred             eEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccCCchHh--------------------h
Confidence            9999998654443  2345677889999999999999998787887765    666655                    3


Q ss_pred             eeeccHHHHHHHHHHHcC---CCCccee-eeEEcccCCCeeeeecccc
Q 022947          191 VTMLDVVRANTFVAEVLG---LDPREVD-VPVVGGHAGVTILPLLSQV  234 (289)
Q Consensus       191 ~t~lds~R~~~~lA~~l~---v~~~~V~-~~V~G~hg~~~~vp~~S~~  234 (289)
                      .|..-...+-...++..+   -...-|+ +-|+|..|  +.+|+|...
T Consensus       388 aTKr~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSrG--SViPlFk~Q  433 (588)
T COG1086         388 ATKRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSRG--SVIPLFKKQ  433 (588)
T ss_pred             HHHHHHHHHHHHHhhccCCCCcEEEEEEecceecCCC--CCHHHHHHH
Confidence            332111111222222121   1223344 66999998  589998753

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=98.42  E-value=2e-06  Score=81.96  Aligned_cols=170  Identities=15%  Similarity=0.091  Sum_probs=99.0

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEE--EEecCCCHHhhhCCCCEEEEc
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR--GFLGQQQLEDALTGMDIVIIP  121 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~--~~~~t~d~~eal~~aDiVIit  121 (289)
                      ...|||.|+|++|+||++++..|...|+  +|..+|+.... ...+   ........  ......++.++++++|+||++
T Consensus        19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~--~V~~v~r~~~~-~~~~---~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~   92 (370)
T PLN02695         19 SEKLRICITGAGGFIASHIARRLKAEGH--YIIASDWKKNE-HMSE---DMFCHEFHLVDLRVMENCLKVTKGVDHVFNL   92 (370)
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHhCCC--EEEEEEecccc-cccc---ccccceEEECCCCCHHHHHHHHhCCCEEEEc
Confidence            3567999999999999999999999998  99999975411 0000   00000110  011112244557899999999


Q ss_pred             CCCCCCCC---CchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC-----cccH---HHHHHHHHHhCCCCCCcEEE
Q 022947          122 AGVPRKPG---MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV-----NSTV---PIAAEVFKKVGTYDPKRLLG  190 (289)
Q Consensus       122 ag~~~~~g---~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPv-----d~~t---~~~~~~~~~~~~~~~~kviG  190 (289)
                      |+.....+   ......+..|+.....+++.+++...+.+|. +|...     ....   .+ .|  .....++|...+|
T Consensus        93 Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~-~SS~~vYg~~~~~~~~~~~-~E--~~~~p~~p~s~Yg  168 (370)
T PLN02695         93 AADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFY-ASSACIYPEFKQLETNVSL-KE--SDAWPAEPQDAYG  168 (370)
T ss_pred             ccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEE-eCchhhcCCccccCcCCCc-Cc--ccCCCCCCCCHHH
Confidence            87432111   1223346789999999999998876554443 43321     0000   00 00  0000233444566


Q ss_pred             eeeccHHHHHHHHHHHcCCCCccee-eeEEcccC
Q 022947          191 VTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (289)
Q Consensus       191 ~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg  223 (289)
                      .+.....++-...++..|++..-++ ..++|.++
T Consensus       169 ~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~  202 (370)
T PLN02695        169 LEKLATEELCKHYTKDFGIECRIGRFHNIYGPFG  202 (370)
T ss_pred             HHHHHHHHHHHHHHHHhCCCEEEEEECCccCCCC
Confidence            6555555554555677788877777 45888764

>PLN02427 UDP-apiose/xylose synthase

Probab=98.42  E-value=2.6e-06  Score=81.24  Aligned_cols=116  Identities=16%  Similarity=0.096  Sum_probs=72.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhC-CCccEEEEEeCCCch-hHHhhhhcccCCceEEEEe----cCCCHHhhhCCCCEE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGFL----GQQQLEDALTGMDIV  118 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~-g~~~eI~LvD~~~~~-g~~~DL~~~~~~~~v~~~~----~t~d~~eal~~aDiV  118 (289)
                      ++|||.|+||+||+|++++..|+.. +.  +|+.+|.+... ....+.........+..+.    ...++.++++++|+|
T Consensus        13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~--~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~V   90 (386)
T PLN02427         13 KPLTICMIGAGGFIGSHLCEKLMTETPH--KVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLT   90 (386)
T ss_pred             cCcEEEEECCcchHHHHHHHHHHhcCCC--EEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEE
Confidence            3679999999999999999999887 46  89999975421 1111110000011222221    122456778899999


Q ss_pred             EEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 022947          119 IIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       119 Iitag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      |++|+.....  .....+.+..|+.....+++..++.. . .++++|.
T Consensus        91 iHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~-~-r~v~~SS  136 (386)
T PLN02427         91 INLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN-K-RLIHFST  136 (386)
T ss_pred             EEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC-C-EEEEEee
Confidence            9999864221  11223456678888888888877665 3 4555553

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=98.41  E-value=1.3e-06  Score=86.86  Aligned_cols=118  Identities=21%  Similarity=0.273  Sum_probs=77.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc---hh--HHhhh----hccc---------CCceEEEEecCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PG--VTADI----SHMD---------TNAVVRGFLGQQQ  107 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~---~g--~~~DL----~~~~---------~~~~v~~~~~t~d  107 (289)
                      ..||+|||+ |.+|+.+|..++..|+  +|+++|+++.   .+  ...++    ....         ...++..   +++
T Consensus         7 i~~V~VIGa-G~MG~gIA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~~   80 (507)
T PRK08268          7 IATVAVIGA-GAMGAGIAQVAAQAGH--TVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRP---VEA   80 (507)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCC
Confidence            358999999 9999999999999998  9999999871   11  11111    1100         0112343   346


Q ss_pred             HHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCC
Q 022947          108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK  186 (289)
Q Consensus       108 ~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~  186 (289)
                      + +++++||+||.+.              .++.++.+.+...+.+.+ |++++  +||.+.+-..   + +.... -.|+
T Consensus        81 ~-~~~~~aDlViEav--------------~E~~~vK~~vf~~l~~~~~~~ail--asntStl~i~---~-la~~~-~~p~  138 (507)
T PRK08268         81 L-ADLADCDLVVEAI--------------VERLDVKQALFAQLEAIVSPDCIL--ATNTSSLSIT---A-IAAAL-KHPE  138 (507)
T ss_pred             H-HHhCCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHH---H-HHhhc-CCcc
Confidence            6 5689999999984              346777888888899987 56655  5676654321   1 12223 2467


Q ss_pred             cEEEe
Q 022947          187 RLLGV  191 (289)
Q Consensus       187 kviG~  191 (289)
                      |++|+
T Consensus       139 r~~G~  143 (507)
T PRK08268        139 RVAGL  143 (507)
T ss_pred             cEEEE
Confidence            88887

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=98.39  E-value=3.7e-06  Score=78.57  Aligned_cols=113  Identities=17%  Similarity=0.202  Sum_probs=74.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchh-H-HhhhhcccCCceEEEE----ecCCCHHhhhCCCCEEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-V-TADISHMDTNAVVRGF----LGQQQLEDALTGMDIVI  119 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g-~-~~DL~~~~~~~~v~~~----~~t~d~~eal~~aDiVI  119 (289)
                      .++|.|+||+|++|++++..|+..+...+|+++|++.... . ..++..    ..+..+    ....++.+++++.|+||
T Consensus         4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~----~~~~~v~~Dl~d~~~l~~~~~~iD~Vi   79 (324)
T TIGR03589         4 NKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPA----PCLRFFIGDVRDKERLTRALRGVDYVV   79 (324)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCC----CcEEEEEccCCCHHHHHHHHhcCCEEE
Confidence            4689999999999999999988876323899998765211 1 111111    122211    11234556778999999


Q ss_pred             EcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          120 IPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       120 itag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      ++||....+  ..+..+.+..|+.....+++.+.+.... .++++|
T Consensus        80 h~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~-~iV~~S  124 (324)
T TIGR03589        80 HAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVK-RVVALS  124 (324)
T ss_pred             ECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence            999864322  2234567889999999999999876543 444444

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PLN02650 dihydroflavonol-4-reductase

Probab=98.37  E-value=8.2e-06  Score=76.71  Aligned_cols=179  Identities=17%  Similarity=0.064  Sum_probs=100.6

Q ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcc-cCCceEEEE----ecCCCHHhhhCCCC
Q 022947           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHM-DTNAVVRGF----LGQQQLEDALTGMD  116 (289)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~-~~~~~v~~~----~~t~d~~eal~~aD  116 (289)
                      ++..++|.|+||+|++|++++..|+..|+  +|++++++.. .....++... .....+..+    .....+.+.++++|
T Consensus         2 ~~~~k~iLVTGatGfIGs~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d   79 (351)
T PLN02650          2 GSQKETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCT   79 (351)
T ss_pred             CCCCCEEEEeCCcHHHHHHHHHHHHHCCC--EEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCC
Confidence            34566999999999999999999999997  8888887652 1111122111 001122211    11234567788999


Q ss_pred             EEEEcCCCCCCCCCc-hhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCccc-----HHHHHHHHH---Hh--CCCCC
Q 022947          117 IVIIPAGVPRKPGMT-RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNST-----VPIAAEVFK---KV--GTYDP  185 (289)
Q Consensus       117 iVIitag~~~~~g~~-r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~-----t~~~~~~~~---~~--~~~~~  185 (289)
                      +||++|+.......+ ..+.+..|+.....+++.+.+...-..++++|.....-     .+...|-.+   ..  ...++
T Consensus        80 ~ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~  159 (351)
T PLN02650         80 GVFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRRKKMT  159 (351)
T ss_pred             EEEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCchhhhhccccc
Confidence            999998753221111 23567889999999999998865323455444321000     000000000   00  00001


Q ss_pred             CcEEEeeeccHHHHHHHHHHHcCCCCccee-eeEEcccC
Q 022947          186 KRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (289)
Q Consensus       186 ~kviG~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg  223 (289)
                      ...+|.+.+....+-...++..|++...++ ..|+|..-
T Consensus       160 ~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~  198 (351)
T PLN02650        160 GWMYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPFI  198 (351)
T ss_pred             cchHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCCC
Confidence            123455544444455556777788777776 55888753

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=98.37  E-value=8.2e-06  Score=74.51  Aligned_cols=167  Identities=15%  Similarity=0.047  Sum_probs=96.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc---hhHHhhhhcccCCceEEEE----ecCCCHHhhhCC--CCEE
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGF----LGQQQLEDALTG--MDIV  118 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~---~g~~~DL~~~~~~~~v~~~----~~t~d~~eal~~--aDiV  118 (289)
                      ||.|+||+|++|.+++..|+..+...+|+++|....   .....++...   ..+..+    ...+++.+++++  +|+|
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~d~v   77 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDN---PRYRFVKGDIGDRELVSRLFTEHQPDAV   77 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccC---CCcEEEEcCCcCHHHHHHHHhhcCCCEE
Confidence            589999999999999998887763238899986431   1111122111   112211    112245566776  8999


Q ss_pred             EEcCCCCCC--CCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC-----cccHHHHHHHHHHhCCCCCCcEEEe
Q 022947          119 IIPAGVPRK--PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV-----NSTVPIAAEVFKKVGTYDPKRLLGV  191 (289)
Q Consensus       119 Iitag~~~~--~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPv-----d~~t~~~~~~~~~~~~~~~~kviG~  191 (289)
                      |++++....  .......++..|+.....+++.+.+...+..++.+|...     ....++     .+....++...+|.
T Consensus        78 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~~-----~e~~~~~~~~~Y~~  152 (317)
T TIGR01181        78 VHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDAF-----TETTPLAPSSPYSA  152 (317)
T ss_pred             EEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCCc-----CCCCCCCCCCchHH
Confidence            999975421  112234567789999999999988875554565554311     000000     00112334445565


Q ss_pred             eeccHHHHHHHHHHHcCCCCccee-eeEEccc
Q 022947          192 TMLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (289)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~h  222 (289)
                      +.....++-..+++..+++..-++ ..++|..
T Consensus       153 sK~~~e~~~~~~~~~~~~~~~i~R~~~i~G~~  184 (317)
T TIGR01181       153 SKAASDHLVRAYHRTYGLPALITRCSNNYGPY  184 (317)
T ss_pred             HHHHHHHHHHHHHHHhCCCeEEEEeccccCCC
Confidence            544455555556677777776666 3477754

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.36  E-value=3.5e-06  Score=78.30  Aligned_cols=119  Identities=23%  Similarity=0.365  Sum_probs=71.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhh-hh---cc----c----CCceEEEEecCCCHHhhh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTAD-IS---HM----D----TNAVVRGFLGQQQLEDAL  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~D-L~---~~----~----~~~~v~~~~~t~d~~eal  112 (289)
                      .+||+|||+ |.+|..++..|+..|+  +|+++|+++. .....+ +.   ..    .    ...++.   .++++.+++
T Consensus         4 ~~~I~vIGa-G~mG~~iA~~l~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---~~~~~~~~~   77 (311)
T PRK06130          4 IQNLAIIGA-GTMGSGIAALFARKGL--QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIR---MEAGLAAAV   77 (311)
T ss_pred             ccEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceE---EeCCHHHHh
Confidence            468999998 9999999999999997  9999998761 111110 00   00    0    001122   234676789


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022947          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~  191 (289)
                      ++||+||++.-              .......++...+..++ ++++|  +||.+.+-..   ++ .+... .+.+++|+
T Consensus        78 ~~aDlVi~av~--------------~~~~~~~~v~~~l~~~~~~~~ii--~s~tsg~~~~---~l-~~~~~-~~~~~ig~  136 (311)
T PRK06130         78 SGADLVIEAVP--------------EKLELKRDVFARLDGLCDPDTIF--ATNTSGLPIT---AI-AQAVT-RPERFVGT  136 (311)
T ss_pred             ccCCEEEEecc--------------CcHHHHHHHHHHHHHhCCCCcEE--EECCCCCCHH---HH-HhhcC-CcccEEEE
Confidence            99999999852              12344556666677766 45544  4666554322   22 22221 24567776

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=98.35  E-value=4.6e-06  Score=76.16  Aligned_cols=167  Identities=19%  Similarity=0.146  Sum_probs=98.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccC-CceEEEEecCCCHHhhhCCC-CEEEEcCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT-NAVVRGFLGQQQLEDALTGM-DIVIIPAGV  124 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~-~~~v~~~~~t~d~~eal~~a-DiVIitag~  124 (289)
                      |+|.|+|++|+||++++..|++.|+  +|+.+|+........+ .+... ...+.   ......+.+++. |.||++++.
T Consensus         1 ~~ILVtG~tGfiG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~-~~~~~~~~d~~---~~~~~~~~~~~~~d~vih~aa~   74 (314)
T COG0451           1 MRILVTGGAGFIGSHLVERLLAAGH--DVRGLDRLRDGLDPLL-SGVEFVVLDLT---DRDLVDELAKGVPDAVIHLAAQ   74 (314)
T ss_pred             CeEEEEcCcccHHHHHHHHHHhCCC--eEEEEeCCCccccccc-cccceeeeccc---chHHHHHHHhcCCCEEEEcccc
Confidence            3599999999999999999999988  9999998652111111 11100 00111   112234556777 999999987


Q ss_pred             CCCCCCch---hhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccH-H----HHHHHHHHhCCCCCCcEEEeeeccH
Q 022947          125 PRKPGMTR---DDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTV-P----IAAEVFKKVGTYDPKRLLGVTMLDV  196 (289)
Q Consensus       125 ~~~~g~~r---~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t-~----~~~~~~~~~~~~~~~kviG~t~lds  196 (289)
                      ...++..+   .++...|+...+++++..++.. -..++..| .....- .    .+.|-.   +...|...+|.+.+..
T Consensus        75 ~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~-~~~~v~~s-s~~~~~~~~~~~~~~E~~---~~~~p~~~Yg~sK~~~  149 (314)
T COG0451          75 SSVPDSNASDPAEFLDVNVDGTLNLLEAARAAG-VKRFVFAS-SVSVVYGDPPPLPIDEDL---GPPRPLNPYGVSKLAA  149 (314)
T ss_pred             CchhhhhhhCHHHHHHHHHHHHHHHHHHHHHcC-CCeEEEeC-CCceECCCCCCCCccccc---CCCCCCCHHHHHHHHH
Confidence            65444332   2478899999999999999833 33333332 221110 0    000100   1112222356665555


Q ss_pred             HHHHHHHHHHcCCCCccee-eeEEcccCC
Q 022947          197 VRANTFVAEVLGLDPREVD-VPVVGGHAG  224 (289)
Q Consensus       197 ~R~~~~lA~~l~v~~~~V~-~~V~G~hg~  224 (289)
                      .+.-...++..+++..-++ ..|+|.+..
T Consensus       150 E~~~~~~~~~~~~~~~ilR~~~vyGp~~~  178 (314)
T COG0451         150 EQLLRAYARLYGLPVVILRPFNVYGPGDK  178 (314)
T ss_pred             HHHHHHHHHHhCCCeEEEeeeeeeCCCCC
Confidence            5555555556678888888 458887654

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=98.35  E-value=5.9e-06  Score=76.24  Aligned_cols=106  Identities=18%  Similarity=0.134  Sum_probs=70.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch-hHHhhhhccc-CCceEEEE----ecCCCHHhhhCCCCEEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMD-TNAVVRGF----LGQQQLEDALTGMDIVI  119 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~-g~~~DL~~~~-~~~~v~~~----~~t~d~~eal~~aDiVI  119 (289)
                      .+||.|+||+|++|++++..|+.+|+  +|++++++... .....+.... ....+..+    .....+.++++++|+||
T Consensus         4 ~~~ilVtGatGfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi   81 (322)
T PLN02662          4 GKVVCVTGASGYIASWLVKLLLQRGY--TVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVF   81 (322)
T ss_pred             CCEEEEECChHHHHHHHHHHHHHCCC--EEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEE
Confidence            36899999999999999999999998  88888876521 1111111110 01122221    12234667789999999


Q ss_pred             EcCCCCCCC-CCchhhHHHhhHHHHHHHHHHHHHh
Q 022947          120 IPAGVPRKP-GMTRDDLFNINAGIVKTLCEGIAKC  153 (289)
Q Consensus       120 itag~~~~~-g~~r~d~~~~N~~i~~~i~~~i~~~  153 (289)
                      ++|+..... .....+.+..|+.....+++.+.+.
T Consensus        82 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~  116 (322)
T PLN02662         82 HTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKV  116 (322)
T ss_pred             EeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhC
Confidence            999854221 1222356788999999999998876

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=98.35  E-value=3.1e-06  Score=78.19  Aligned_cols=121  Identities=22%  Similarity=0.348  Sum_probs=73.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch-hHH--------hhhhcccC------CceEEEEecCCCHHh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVT--------ADISHMDT------NAVVRGFLGQQQLED  110 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~-g~~--------~DL~~~~~------~~~v~~~~~t~d~~e  110 (289)
                      .+||+|||+ |.+|..+|..++..|+  +|+++|.++.. ...        .++.....      .........++++ +
T Consensus         4 ~~~V~vIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~   79 (295)
T PLN02545          4 IKKVGVVGA-GQMGSGIAQLAAAAGM--DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-E   79 (295)
T ss_pred             cCEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-H
Confidence            358999999 9999999999999997  99999997611 110        01111100      0001111123455 6


Q ss_pred             hhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEE
Q 022947          111 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLL  189 (289)
Q Consensus       111 al~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kvi  189 (289)
                      ++++||+||.+.              .++..+...+...+.++. |++++  +||-+.+-..   + +.+..+ .+.+++
T Consensus        80 ~~~~aD~Vieav--------------~e~~~~k~~v~~~l~~~~~~~~il--~s~tS~i~~~---~-l~~~~~-~~~r~~  138 (295)
T PLN02545         80 ELRDADFIIEAI--------------VESEDLKKKLFSELDRICKPSAIL--ASNTSSISIT---R-LASATQ-RPQQVI  138 (295)
T ss_pred             HhCCCCEEEEcC--------------ccCHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHH---H-HHhhcC-CCcceE
Confidence            799999999985              234556667777787776 56654  4676665321   1 222222 245677


Q ss_pred             Ee
Q 022947          190 GV  191 (289)
Q Consensus       190 G~  191 (289)
                      |+
T Consensus       139 g~  140 (295)
T PLN02545        139 GM  140 (295)
T ss_pred             EE
Confidence            76

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=98.34  E-value=1.2e-05  Score=82.32  Aligned_cols=178  Identities=15%  Similarity=0.049  Sum_probs=105.3

Q ss_pred             cccccccccCCCCCCCEEEEEcCCCccHHHHHHHHHhC-CCccEEEEEeCCCchhHHhhhhcccCCceEEEEec--C--C
Q 022947           32 GLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG--Q--Q  106 (289)
Q Consensus        32 ~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~-g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~--t--~  106 (289)
                      |-++--|..+   +.|||.|+||+||+|++++..|+.. ++  +|+.+|++...-  .++..   ...+..+.+  +  .
T Consensus       304 ~~~~~~~~~~---~~~~VLVTGatGFIGs~Lv~~Ll~~~g~--~V~~l~r~~~~~--~~~~~---~~~~~~~~gDl~d~~  373 (660)
T PRK08125        304 LNSKPACSAK---RRTRVLILGVNGFIGNHLTERLLRDDNY--EVYGLDIGSDAI--SRFLG---HPRFHFVEGDISIHS  373 (660)
T ss_pred             ecccchhhhh---cCCEEEEECCCchHHHHHHHHHHhCCCc--EEEEEeCCchhh--hhhcC---CCceEEEeccccCcH
Confidence            3445556554   6789999999999999999988874 67  999999865210  11111   111221111  1  1


Q ss_pred             C-HHhhhCCCCEEEEcCCCCCC--CCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccH----HHHHHHHHH
Q 022947          107 Q-LEDALTGMDIVIIPAGVPRK--PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTV----PIAAEVFKK  179 (289)
Q Consensus       107 d-~~eal~~aDiVIitag~~~~--~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t----~~~~~~~~~  179 (289)
                      + +.++++++|+||++|+....  ......+.+..|+....++.+.++++. . .++.+|... +..    ....|-...
T Consensus       374 ~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~-~-~~V~~SS~~-vyg~~~~~~~~E~~~~  450 (660)
T PRK08125        374 EWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN-K-RIIFPSTSE-VYGMCTDKYFDEDTSN  450 (660)
T ss_pred             HHHHHHhcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC-C-eEEEEcchh-hcCCCCCCCcCccccc
Confidence            1 34568899999999886432  122345677889999999999999876 3 444444311 100    000010000


Q ss_pred             ---hCCCCCCcEEEeeeccHHHHHHHHHHHcCCCCccee-eeEEccc
Q 022947          180 ---VGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (289)
Q Consensus       180 ---~~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~h  222 (289)
                         ...-++...+|.+.+-..++-...++..+++...++ ..|+|.+
T Consensus       451 ~~~~p~~~p~s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~  497 (660)
T PRK08125        451 LIVGPINKQRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPR  497 (660)
T ss_pred             cccCCCCCCccchHHHHHHHHHHHHHHHHhcCCceEEEEEceeeCCC
Confidence               000012235777765566666666777888888887 4488875

>PLN02206 UDP-glucuronate decarboxylase

Probab=98.31  E-value=8.3e-06  Score=79.80  Aligned_cols=112  Identities=16%  Similarity=0.045  Sum_probs=73.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      +.|||.|+||+|+||++++..|+.+|+  +|+.+|....  .....+.  .. ..++..+.. +-...++.++|+||++|
T Consensus       118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~--~V~~ld~~~~~~~~~~~~~--~~-~~~~~~i~~-D~~~~~l~~~D~ViHlA  191 (442)
T PLN02206        118 KGLRVVVTGGAGFVGSHLVDRLMARGD--SVIVVDNFFTGRKENVMHH--FS-NPNFELIRH-DVVEPILLEVDQIYHLA  191 (442)
T ss_pred             CCCEEEEECcccHHHHHHHHHHHHCcC--EEEEEeCCCccchhhhhhh--cc-CCceEEEEC-CccChhhcCCCEEEEee
Confidence            457999999999999999999999997  8999986531  1111111  11 122332211 11234578899999999


Q ss_pred             CCCCC--CCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 022947          123 GVPRK--PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       123 g~~~~--~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      +....  ...+..+.+..|+....++++.+++...  .+|++|.
T Consensus       192 a~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~--r~V~~SS  233 (442)
T PLN02206        192 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTST  233 (442)
T ss_pred             eecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEECC
Confidence            75421  1123456778999999999999988753  4555443

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=98.30  E-value=1.3e-05  Score=77.51  Aligned_cols=119  Identities=25%  Similarity=0.325  Sum_probs=75.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhccc----------------CCceEEEEecCCCHHh
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----------------TNAVVRGFLGQQQLED  110 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~----------------~~~~v~~~~~t~d~~e  110 (289)
                      |||+|||. |++|..+|..|+..|+  +|+++|+++..  +.+|....                ...+++.   ++++.+
T Consensus         1 mkI~vIGl-G~~G~~lA~~La~~G~--~V~~~d~~~~~--v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~---~~~~~~   72 (411)
T TIGR03026         1 MKIAVIGL-GYVGLPLAALLADLGH--EVTGVDIDQEK--VDKLNKGKSPIYEPGLDELLAKALAAGRLRA---TTDYED   72 (411)
T ss_pred             CEEEEECC-CchhHHHHHHHHhcCC--eEEEEECCHHH--HHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE---ECCHHH
Confidence            58999998 9999999999999998  89999998621  11111100                0112332   356777


Q ss_pred             hhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEe-cCCCcccHHHHHHHHHH
Q 022947          111 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLI-SNPVNSTVPIAAEVFKK  179 (289)
Q Consensus       111 al~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~-tNPvd~~t~~~~~~~~~  179 (289)
                      ++++||+||++.+.|.....      ..+...+.+.++.+.++. +..+++.. |-|......+...++.+
T Consensus        73 ~~~~advvii~vpt~~~~~~------~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~  137 (411)
T TIGR03026        73 AIRDADVIIICVPTPLKEDG------SPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILER  137 (411)
T ss_pred             HHhhCCEEEEEeCCCCCCCC------CcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHh
Confidence            89999999999887754321      124566666777777664 45555443 44555544444344333

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=98.30  E-value=1.9e-05  Score=74.19  Aligned_cols=169  Identities=15%  Similarity=0.066  Sum_probs=98.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEE----EecCCCHHhhhC--CCCEEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG----FLGQQQLEDALT--GMDIVI  119 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~----~~~t~d~~eal~--~aDiVI  119 (289)
                      ++||.|+||+|++|++++..|...|. ..++++|..+..+....+........+..    +...+++.+.++  +.|+||
T Consensus         1 ~~~vlVtGatGfIG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vi   79 (355)
T PRK10217          1 MRKILITGGAGFIGSALVRYIINETS-DAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVM   79 (355)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHHcCC-CEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEE
Confidence            35899999999999999999998885 24667776532111111111100111111    111123445566  389999


Q ss_pred             EcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhC-------CC-cEEEEecCCC---------cccHHHHHHHHHHh
Q 022947          120 IPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCC-------PK-AIVNLISNPV---------NSTVPIAAEVFKKV  180 (289)
Q Consensus       120 itag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~-------p~-aiviv~tNPv---------d~~t~~~~~~~~~~  180 (289)
                      ++||.....  .....+.+..|+.....+++.+.++.       +. ..++.+|...         +.++    |    .
T Consensus        80 h~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~----E----~  151 (355)
T PRK10217         80 HLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFT----E----T  151 (355)
T ss_pred             ECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCCCCCcC----C----C
Confidence            999864321  11235577889999999999887642       11 2444444321         0011    0    1


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHcCCCCccee-eeEEcccC
Q 022947          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (289)
Q Consensus       181 ~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg  223 (289)
                      ....+...+|.+.+...++...+++..+++..-++ ..|+|.+.
T Consensus       152 ~~~~p~s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~  195 (355)
T PRK10217        152 TPYAPSSPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYH  195 (355)
T ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCC
Confidence            12334445666666666666667788888777776 55888764

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.27  E-value=4.9e-06  Score=77.46  Aligned_cols=103  Identities=23%  Similarity=0.269  Sum_probs=66.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHh--------hhhcccC---------CceEEEEecCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTA--------DISHMDT---------NAVVRGFLGQQQ  107 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~--------DL~~~~~---------~~~v~~~~~t~d  107 (289)
                      .+||+|||+ |.+|++++..|+..|+  +|+++|+++. .....        .+.....         ..++..   +++
T Consensus         2 ~~~V~VIG~-G~mG~~iA~~la~~G~--~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~---~~~   75 (308)
T PRK06129          2 MGSVAIIGA-GLIGRAWAIVFARAGH--EVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRV---TDS   75 (308)
T ss_pred             CcEEEEECc-cHHHHHHHHHHHHCCC--eeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEE---ECc
Confidence            358999998 9999999999999998  9999999861 11100        1111110         112332   457


Q ss_pred             HHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCccc
Q 022947          108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNST  169 (289)
Q Consensus       108 ~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~  169 (289)
                      +.+++++||+|+.+..              .+....+.+...+.+..++..++ .||.....
T Consensus        76 ~~~a~~~ad~Vi~avp--------------e~~~~k~~~~~~l~~~~~~~~ii-~ssts~~~  122 (308)
T PRK06129         76 LADAVADADYVQESAP--------------ENLELKRALFAELDALAPPHAIL-ASSTSALL  122 (308)
T ss_pred             HHHhhCCCCEEEECCc--------------CCHHHHHHHHHHHHHhCCCcceE-EEeCCCCC
Confidence            8788999999999851              13344555666677777554444 46655433

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=98.27  E-value=7.4e-06  Score=81.26  Aligned_cols=104  Identities=13%  Similarity=0.125  Sum_probs=69.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch-hHHhh--------hh---cccC--CceEEEEecCCCHHhh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTAD--------IS---HMDT--NAVVRGFLGQQQLEDA  111 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~-g~~~D--------L~---~~~~--~~~v~~~~~t~d~~ea  111 (289)
                      .+||+|||+ |.+|+.+|..|+..|+  +|.++|+++.. ....+        +.   ....  ..++.   .++++.++
T Consensus         4 i~kIavIG~-G~MG~~iA~~la~~G~--~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~---~~~~~~ea   77 (495)
T PRK07531          4 IMKAACIGG-GVIGGGWAARFLLAGI--DVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLT---FCASLAEA   77 (495)
T ss_pred             cCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceE---eeCCHHHH
Confidence            358999998 9999999999999998  99999998621 11111        00   0000  01233   24577788


Q ss_pred             hCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccH
Q 022947          112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTV  170 (289)
Q Consensus       112 l~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t  170 (289)
                      +++||+||.+..              .+.++.+++...+.+++|+.. ++.||.+++..
T Consensus        78 ~~~aD~Vieavp--------------e~~~vk~~l~~~l~~~~~~~~-iI~SsTsgi~~  121 (495)
T PRK07531         78 VAGADWIQESVP--------------ERLDLKRRVLAEIDAAARPDA-LIGSSTSGFLP  121 (495)
T ss_pred             hcCCCEEEEcCc--------------CCHHHHHHHHHHHHhhCCCCc-EEEEcCCCCCH
Confidence            999999999841              245556667777887775443 34677777643

>CHL00194 ycf39 Ycf39; Provisional

Probab=98.24  E-value=8.2e-06  Score=75.84  Aligned_cols=105  Identities=12%  Similarity=0.062  Sum_probs=69.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEE--EEecCCCHHhhhCCCCEEEEcCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR--GFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~--~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      |||.|+||+|++|++++..|+..|+  +|+.++++....  ..+.+..  ..+.  ......++.++++++|+||++++.
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~--~V~~l~R~~~~~--~~l~~~~--v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~   74 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGY--QVRCLVRNLRKA--SFLKEWG--AELVYGDLSLPETLPPSFKGVTAIIDASTS   74 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--eEEEEEcChHHh--hhHhhcC--CEEEECCCCCHHHHHHHHCCCCEEEECCCC
Confidence            5899999999999999999999998  899998865211  1111111  1111  011123467889999999998764


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEE
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN  160 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aivi  160 (289)
                      ...   ...++...|......+++.+++.+-+-+|.
T Consensus        75 ~~~---~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~  107 (317)
T CHL00194         75 RPS---DLYNAKQIDWDGKLALIEAAKAAKIKRFIF  107 (317)
T ss_pred             CCC---CccchhhhhHHHHHHHHHHHHHcCCCEEEE
Confidence            321   122345668888888999888876554443

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=98.24  E-value=1.4e-05  Score=76.95  Aligned_cols=114  Identities=18%  Similarity=0.276  Sum_probs=69.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcc------------cCCceEEEEecCCCHHhhhCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM------------DTNAVVRGFLGQQQLEDALTG  114 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~------------~~~~~v~~~~~t~d~~eal~~  114 (289)
                      |||+|||+ |+||..+|..++. |+  +|+.+|+++.+  +..+...            ......+ +..+.+..++.++
T Consensus         1 mkI~VIGl-GyvGl~~A~~lA~-G~--~VigvD~d~~k--v~~l~~g~~~~~e~~l~~~l~~~~~~-l~~t~~~~~~~~~   73 (388)
T PRK15057          1 MKITISGT-GYVGLSNGLLIAQ-NH--EVVALDILPSR--VAMLNDRISPIVDKEIQQFLQSDKIH-FNATLDKNEAYRD   73 (388)
T ss_pred             CEEEEECC-CHHHHHHHHHHHh-CC--cEEEEECCHHH--HHHHHcCCCCCCCcCHHHHHHhCCCc-EEEecchhhhhcC
Confidence            58999998 9999999977775 76  99999998721  1111110            0001111 1123456678899


Q ss_pred             CCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEE-EecCCCcccHHH
Q 022947          115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN-LISNPVNSTVPI  172 (289)
Q Consensus       115 aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aivi-v~tNPvd~~t~~  172 (289)
                      ||+||++.+.|......     ..++..+.++++.+.+..|..+|+ -.|-|....-.+
T Consensus        74 ad~vii~Vpt~~~~k~~-----~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l  127 (388)
T PRK15057         74 ADYVIIATPTDYDPKTN-----YFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAM  127 (388)
T ss_pred             CCEEEEeCCCCCccCCC-----CcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHH
Confidence            99999998766322111     124556666666666644555544 336676665443

>PLN02572 UDP-sulfoquinovose synthase

Probab=98.21  E-value=1.8e-05  Score=77.33  Aligned_cols=176  Identities=14%  Similarity=0.116  Sum_probs=101.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc---hh------------HHhhhh---cccCCceEEEEe---
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PG------------VTADIS---HMDTNAVVRGFL---  103 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~---~g------------~~~DL~---~~~~~~~v~~~~---  103 (289)
                      +++||.|+||+|+||++++..|+..|.  +|+++|....   ..            ....+.   +.. ...+..+.   
T Consensus        46 ~~k~VLVTGatGfIGs~Lv~~L~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~v~~v~~Dl  122 (442)
T PLN02572         46 KKKKVMVIGGDGYCGWATALHLSKRGY--EVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVS-GKEIELYVGDI  122 (442)
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeccccccccccccccccccccchHHHHHHHHHhh-CCcceEEECCC
Confidence            357899999999999999999999997  8999985321   00            000010   000 01122221   


Q ss_pred             -cCCCHHhhhC--CCCEEEEcCCCCCCC-CC-ch---hhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC------CCccc
Q 022947          104 -GQQQLEDALT--GMDIVIIPAGVPRKP-GM-TR---DDLFNINAGIVKTLCEGIAKCCPKAIVNLISN------PVNST  169 (289)
Q Consensus       104 -~t~d~~eal~--~aDiVIitag~~~~~-g~-~r---~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN------Pvd~~  169 (289)
                       ...++.++++  ++|+||++|+....+ .. +.   ...+..|+.....+++.+++++....++.+|.      |-+.+
T Consensus       123 ~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~~~~  202 (442)
T PLN02572        123 CDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPNIDI  202 (442)
T ss_pred             CCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCCCCC
Confidence             1123444555  489999998653221 11 11   23356799999999999998876544544331      11000


Q ss_pred             H--HH-HHHHHHHh---CCCCCCcEEEeeeccHHHHHHHHHHHcCCCCccee-eeEEcccC
Q 022947          170 V--PI-AAEVFKKV---GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (289)
Q Consensus       170 t--~~-~~~~~~~~---~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg  223 (289)
                      .  ++ ..+.....   .-..|...+|.+.+....+....++..|++...++ ..|+|.+.
T Consensus       203 ~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~  263 (442)
T PLN02572        203 EEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRT  263 (442)
T ss_pred             cccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCC
Confidence            0  00 00000000   01234567888766555566667788899888887 55899864

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=98.21  E-value=1.4e-05  Score=73.58  Aligned_cols=111  Identities=17%  Similarity=0.193  Sum_probs=73.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEE-EEecCCCHHhhhCCCCEEEEcCCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~-~~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      |||.|+|++|++|++++..|+..|.  +|+++|++....  .++.+... ..+. ......++.++++++|+||++++..
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~--~~~~~~~~-~~~~~D~~~~~~l~~~~~~~d~vi~~a~~~   75 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGE--EVRVLVRPTSDR--RNLEGLDV-EIVEGDLRDPASLRKAVAGCRALFHVAADY   75 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCC--EEEEEEecCccc--cccccCCc-eEEEeeCCCHHHHHHHHhCCCEEEEeceec
Confidence            4899999999999999999999997  999999865211  11111110 0111 1111224567788999999998754


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      .....+..+....|+.....+++.+.+..-.- ++++|
T Consensus        76 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~v~~S  112 (328)
T TIGR03466        76 RLWAPDPEEMYAANVEGTRNLLRAALEAGVER-VVYTS  112 (328)
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHHhCCCe-EEEEe
Confidence            32233455677889999999999888765333 44444

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PLN02214 cinnamoyl-CoA reductase

Probab=98.20  E-value=2.4e-05  Score=73.67  Aligned_cols=170  Identities=15%  Similarity=0.039  Sum_probs=97.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch---hHHhhhhcccCCceEEEE----ecCCCHHhhhCCCCEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMDTNAVVRGF----LGQQQLEDALTGMDIV  118 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~---g~~~DL~~~~~~~~v~~~----~~t~d~~eal~~aDiV  118 (289)
                      +++|.|+||+|++|++++..|+.+|+  +|+.++++...   ....++...  ...+..+    ....++.++++++|+|
T Consensus        10 ~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~V   85 (342)
T PLN02214         10 GKTVCVTGAGGYIASWIVKILLERGY--TVKGTVRNPDDPKNTHLRELEGG--KERLILCKADLQDYEALKAAIDGCDGV   85 (342)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCchhhhHHHHHHhhCC--CCcEEEEecCcCChHHHHHHHhcCCEE
Confidence            46899999999999999999999998  88888876421   111112111  1122221    1223466788999999


Q ss_pred             EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccH-------HHHHHHHHHhC--CCCCCcEE
Q 022947          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTV-------PIAAEVFKKVG--TYDPKRLL  189 (289)
Q Consensus       119 Iitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t-------~~~~~~~~~~~--~~~~~kvi  189 (289)
                      |++|+...   ....+.+..|+.....+++.+.+.....+ +++|.-..+-.       ..+.|-.+...  -..+...+
T Consensus        86 ih~A~~~~---~~~~~~~~~nv~gt~~ll~aa~~~~v~r~-V~~SS~~avyg~~~~~~~~~~~E~~~~~~~~~~~p~~~Y  161 (342)
T PLN02214         86 FHTASPVT---DDPEQMVEPAVNGAKFVINAAAEAKVKRV-VITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKNTKNWY  161 (342)
T ss_pred             EEecCCCC---CCHHHHHHHHHHHHHHHHHHHHhcCCCEE-EEeccceeeeccCCCCCCcccCcccCCChhhccccccHH
Confidence            99998542   22355678899999999999988754433 33332111100       00001000000  00011223


Q ss_pred             EeeeccHHHHHHHHHHHcCCCCccee-eeEEcccC
Q 022947          190 GVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (289)
Q Consensus       190 G~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg  223 (289)
                      |.+.....++....++..|++..-++ ..|+|.+.
T Consensus       162 ~~sK~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~~  196 (342)
T PLN02214        162 CYGKMVAEQAAWETAKEKGVDLVVLNPVLVLGPPL  196 (342)
T ss_pred             HHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCC
Confidence            33433344444555666788777777 55888753

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=98.19  E-value=3.2e-05  Score=71.34  Aligned_cols=163  Identities=17%  Similarity=0.115  Sum_probs=109.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-chhHHhhhhcccC-CceEEEEecCCCHHhhh--CCCCEEEEcC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDT-NAVVRGFLGQQQLEDAL--TGMDIVIIPA  122 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~~g~~~DL~~~~~-~~~v~~~~~t~d~~eal--~~aDiVIita  122 (289)
                      |+|.|+|++|+|||+.+..|++.|+  +++.+|.-. -...+.+-..... ...++.   ..-+.+.|  ...|.||+.|
T Consensus         1 ~~iLVtGGAGYIGSHtv~~Ll~~G~--~vvV~DNL~~g~~~~v~~~~~~f~~gDi~D---~~~L~~vf~~~~idaViHFA   75 (329)
T COG1087           1 MKVLVTGGAGYIGSHTVRQLLKTGH--EVVVLDNLSNGHKIALLKLQFKFYEGDLLD---RALLTAVFEENKIDAVVHFA   75 (329)
T ss_pred             CeEEEecCcchhHHHHHHHHHHCCC--eEEEEecCCCCCHHHhhhccCceEEecccc---HHHHHHHHHhcCCCEEEECc
Confidence            6899999999999999999999998  999999865 1111111111000 011111   11122333  4789999998


Q ss_pred             CCCCCCCC---chhhHHHhhHHHHHHHHHHHHHhCCCcEEEEe-----cCCCcccHHHHHHHHHHhCCCCCCcEEEeeec
Q 022947          123 GVPRKPGM---TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI-----SNPVNSTVPIAAEVFKKVGTYDPKRLLGVTML  194 (289)
Q Consensus       123 g~~~~~g~---~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~-----tNPvd~~t~~~~~~~~~~~~~~~~kviG~t~l  194 (289)
                      |...- |+   .-+.++..|+-....+.+.|.+++.+-+|+-.     .+|..+  ++     .+..-..|.+-+|-|.|
T Consensus        76 a~~~V-gESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~--PI-----~E~~~~~p~NPYG~sKl  147 (329)
T COG1087          76 ASISV-GESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTS--PI-----SETSPLAPINPYGRSKL  147 (329)
T ss_pred             ccccc-chhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCc--cc-----CCCCCCCCCCcchhHHH
Confidence            75322 22   24678899999999999999999987776532     355441  11     11233557788999988


Q ss_pred             cHHHHHHHHHHHcCCCCcceeee-EEccc
Q 022947          195 DVVRANTFVAEVLGLDPREVDVP-VVGGH  222 (289)
Q Consensus       195 ds~R~~~~lA~~l~v~~~~V~~~-V~G~h  222 (289)
                      -+.++.+-+++..+....-.+-+ +.|-|
T Consensus       148 m~E~iL~d~~~a~~~~~v~LRYFN~aGA~  176 (329)
T COG1087         148 MSEEILRDAAKANPFKVVILRYFNVAGAC  176 (329)
T ss_pred             HHHHHHHHHHHhCCCcEEEEEecccccCC
Confidence            88888898999988766666655 77766

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=98.19  E-value=3.2e-05  Score=72.49  Aligned_cols=175  Identities=14%  Similarity=0.086  Sum_probs=98.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEE----EecCCCHHhhhC--CCCEEEE
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG----FLGQQQLEDALT--GMDIVII  120 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~----~~~t~d~~eal~--~aDiVIi  120 (289)
                      |||.|+||+|++|++++..|+..|. ..++.+|.....+....+........+..    +...+++.++++  ++|+||+
T Consensus         1 mkilITGgtG~iG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih   79 (352)
T PRK10084          1 MKILVTGGAGFIGSAVVRHIINNTQ-DSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMH   79 (352)
T ss_pred             CeEEEECCCcHHhHHHHHHHHHhCC-CeEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEE
Confidence            5899999999999999999988875 24666775431111111111100111111    111123445564  4899999


Q ss_pred             cCCCCCC--CCCchhhHHHhhHHHHHHHHHHHHHhC-------CC-cEEEEecCCCcccHHHH--H--------HHHHHh
Q 022947          121 PAGVPRK--PGMTRDDLFNINAGIVKTLCEGIAKCC-------PK-AIVNLISNPVNSTVPIA--A--------EVFKKV  180 (289)
Q Consensus       121 tag~~~~--~g~~r~d~~~~N~~i~~~i~~~i~~~~-------p~-aiviv~tNPvd~~t~~~--~--------~~~~~~  180 (289)
                      +|+....  ......+++..|+.....+++.+.++.       .. ..++.+|-.. +.....  .        ..+.+.
T Consensus        80 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~-vyg~~~~~~~~~~~~~~~~~~E~  158 (352)
T PRK10084         80 LAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDE-VYGDLPHPDEVENSEELPLFTET  158 (352)
T ss_pred             CCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchh-hcCCCCccccccccccCCCcccc
Confidence            9986422  112235678899999999999988752       11 2344443211 100000  0        000011


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHcCCCCccee-eeEEcccC
Q 022947          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (289)
Q Consensus       181 ~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg  223 (289)
                      ..+.|...+|.+.....++-..+++.++++...++ ..|+|.+.
T Consensus       159 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~~  202 (352)
T PRK10084        159 TAYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYH  202 (352)
T ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCCc
Confidence            12345567777766666666667788888777776 44888763

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=98.16  E-value=2.3e-05  Score=73.56  Aligned_cols=164  Identities=13%  Similarity=0.074  Sum_probs=91.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhC-CCccEEEEEeCCCchhHHhhhhcccCCceEEEEecC-----CCHHhhhCCCCEEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ-----QQLEDALTGMDIVI  119 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~-g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t-----~d~~eal~~aDiVI  119 (289)
                      +|||.|+||+|++|++++..|+.. ++  +|+.+|+....  ..++...   ..+..+.+.     ..+.++++++|+||
T Consensus         1 m~~ilVtGatGfiGs~l~~~L~~~~~~--~V~~~~r~~~~--~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~d~Vi   73 (347)
T PRK11908          1 MKKVLILGVNGFIGHHLSKRILETTDW--EVYGMDMQTDR--LGDLVNH---PRMHFFEGDITINKEWIEYHVKKCDVIL   73 (347)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhCCCC--eEEEEeCcHHH--HHHhccC---CCeEEEeCCCCCCHHHHHHHHcCCCEEE
Confidence            469999999999999999988875 56  89999875311  1111111   112222111     12335678999999


Q ss_pred             EcCCCCCC--CCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC------c-ccHHHHHHHHHHh---CCCCCCc
Q 022947          120 IPAGVPRK--PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV------N-STVPIAAEVFKKV---GTYDPKR  187 (289)
Q Consensus       120 itag~~~~--~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPv------d-~~t~~~~~~~~~~---~~~~~~k  187 (289)
                      ++|+....  ...+.......|+.....+++.+++..  ..++.+|...      + .++    +-....   ...+|..
T Consensus        74 H~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~--~~~v~~SS~~vyg~~~~~~~~----ee~~~~~~~~~~~p~~  147 (347)
T PRK11908         74 PLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPSTSEVYGMCPDEEFD----PEASPLVYGPINKPRW  147 (347)
T ss_pred             ECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC--CeEEEEecceeeccCCCcCcC----ccccccccCcCCCccc
Confidence            99875322  122334456778888889999888764  3555544321      1 000    000000   0001222


Q ss_pred             EEEeeeccHHHHHHHHHHHcCCCCccee-eeEEccc
Q 022947          188 LLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (289)
Q Consensus       188 viG~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~h  222 (289)
                      .+|.+...........++..+++..-++ ..++|.+
T Consensus       148 ~Y~~sK~~~e~~~~~~~~~~~~~~~ilR~~~v~Gp~  183 (347)
T PRK11908        148 IYACSKQLMDRVIWAYGMEEGLNFTLFRPFNWIGPG  183 (347)
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCCeEEEeeeeeeCCC
Confidence            4444444343344445566677777777 4478864

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=98.15  E-value=3.7e-05  Score=74.90  Aligned_cols=119  Identities=14%  Similarity=0.145  Sum_probs=72.8

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccC------------CceEEEEecCCCHHhh
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT------------NAVVRGFLGQQQLEDA  111 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~------------~~~v~~~~~t~d~~ea  111 (289)
                      ..+|||+|||. |+||..+|..|+. ++  +|+.||+++.  .+.+|.....            ...+.   .+++. ++
T Consensus         4 ~~~mkI~vIGl-GyvGlpmA~~la~-~~--~V~g~D~~~~--~ve~l~~G~~~~~e~~~~~l~~~g~l~---~t~~~-~~   73 (425)
T PRK15182          4 IDEVKIAIIGL-GYVGLPLAVEFGK-SR--QVVGFDVNKK--RILELKNGVDVNLETTEEELREARYLK---FTSEI-EK   73 (425)
T ss_pred             CCCCeEEEECc-CcchHHHHHHHhc-CC--EEEEEeCCHH--HHHHHHCcCCCCCCCCHHHHHhhCCee---EEeCH-HH
Confidence            34589999998 9999999998876 55  9999999872  1222221110            01222   23454 57


Q ss_pred             hCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CcEEEE-ecCCCcccHHHHHHHHH
Q 022947          112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNL-ISNPVNSTVPIAAEVFK  178 (289)
Q Consensus       112 l~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p-~aiviv-~tNPvd~~t~~~~~~~~  178 (289)
                      +++||++|+|.+.|.+...      ..++..+....+.|.++.+ ..+||+ .|-|....-.++...+.
T Consensus        74 ~~~advvii~Vptp~~~~~------~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~  136 (425)
T PRK15182         74 IKECNFYIITVPTPINTYK------QPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILA  136 (425)
T ss_pred             HcCCCEEEEEcCCCCCCCC------CcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHH
Confidence            9999999999998864421      1234555555666666553 344333 36666655433333333

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=98.13  E-value=4.4e-05  Score=71.54  Aligned_cols=156  Identities=13%  Similarity=0.020  Sum_probs=88.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc---hhHHhhhhc-c--cCCceEEEE----ecCCCHHhhhCC--
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISH-M--DTNAVVRGF----LGQQQLEDALTG--  114 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~---~g~~~DL~~-~--~~~~~v~~~----~~t~d~~eal~~--  114 (289)
                      +||.|+||+|++|++++..|+..|+  +|+++|++..   ......+.. .  .....+..+    .....+.+++++  
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~   78 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGY--EVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIK   78 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCC--EEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCC
Confidence            4899999999999999999999998  9999998642   111111110 0  001112211    111234455664  


Q ss_pred             CCEEEEcCCCCCCC-C-CchhhHHHhhHHHHHHHHHHHHHhC-CC-cEEEEecC------CCcccHHHHHHHHHHhCCCC
Q 022947          115 MDIVIIPAGVPRKP-G-MTRDDLFNINAGIVKTLCEGIAKCC-PK-AIVNLISN------PVNSTVPIAAEVFKKVGTYD  184 (289)
Q Consensus       115 aDiVIitag~~~~~-g-~~r~d~~~~N~~i~~~i~~~i~~~~-p~-aiviv~tN------Pvd~~t~~~~~~~~~~~~~~  184 (289)
                      .|+||++|+..... . ......+..|+.....+++.+.+.+ .+ ..++.+|.      +.+.  ++     .+...++
T Consensus        79 ~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~--~~-----~E~~~~~  151 (343)
T TIGR01472        79 PTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQEI--PQ-----NETTPFY  151 (343)
T ss_pred             CCEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCCC--CC-----CCCCCCC
Confidence            59999999864322 1 1123344567778888998888765 22 24444332      1110  00     0111234


Q ss_pred             CCcEEEeeeccHHHHHHHHHHHcCCCC
Q 022947          185 PKRLLGVTMLDVVRANTFVAEVLGLDP  211 (289)
Q Consensus       185 ~~kviG~t~lds~R~~~~lA~~l~v~~  211 (289)
                      |...+|.+.+...++....++..+++.
T Consensus       152 p~~~Y~~sK~~~e~~~~~~~~~~~~~~  178 (343)
T TIGR01472       152 PRSPYAAAKLYAHWITVNYREAYGLFA  178 (343)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHhCCce
Confidence            555666666656666666677767653

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=98.13  E-value=7.8e-06  Score=62.50  Aligned_cols=94  Identities=19%  Similarity=0.245  Sum_probs=61.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCC-CccEEEEE-eCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINP-LVSVLHLY-DVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g-~~~eI~Lv-D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      ||+|||+ |.+|+.++..|...+ ...+|.++ ++++.  ...++.... .  +..+  ..+..++++++|+||++.-  
T Consensus         1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~~--~~~~~~~~~-~--~~~~--~~~~~~~~~~advvilav~--   70 (96)
T PF03807_consen    1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSPE--KAAELAKEY-G--VQAT--ADDNEEAAQEADVVILAVK--   70 (96)
T ss_dssp             EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSHH--HHHHHHHHC-T--TEEE--SEEHHHHHHHTSEEEE-S---
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcHH--HHHHHHHhh-c--cccc--cCChHHhhccCCEEEEEEC--
Confidence            7999998 999999999999888 23388866 77652  122222211 1  1111  1246789999999999852  


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCC
Q 022947          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNP  165 (289)
                        |            ..+.++++.+....++.+++-++||
T Consensus        71 --p------------~~~~~v~~~i~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   71 --P------------QQLPEVLSEIPHLLKGKLVISIAAG   96 (96)
T ss_dssp             --G------------GGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred             --H------------HHHHHHHHHHhhccCCCEEEEeCCC
Confidence              1            2255666666445578888887776

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=98.12  E-value=8.9e-05  Score=75.98  Aligned_cols=180  Identities=13%  Similarity=0.006  Sum_probs=97.9

Q ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEec-CCC---HHhhh--CCCC
Q 022947           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL--TGMD  116 (289)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~-t~d---~~eal--~~aD  116 (289)
                      +.+++||.|+||+|+||++++..|+..+...+|+.+|..........+........+..+.+ -.|   +...+  .++|
T Consensus         3 ~~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D   82 (668)
T PLN02260          3 TYEPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGID   82 (668)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCC
Confidence            45678999999999999999999988743338999987431111111111000112322211 112   22222  6899


Q ss_pred             EEEEcCCCCCCCC--CchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHH-H--HHHhCCCCCCcEEEe
Q 022947          117 IVIIPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE-V--FKKVGTYDPKRLLGV  191 (289)
Q Consensus       117 iVIitag~~~~~g--~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~-~--~~~~~~~~~~kviG~  191 (289)
                      +||++|+......  ....++...|+.....+++.+++.+.-..+|.+|.- .+.-..-.. .  ..+.....|...+|.
T Consensus        83 ~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~-~vyg~~~~~~~~~~~E~~~~~p~~~Y~~  161 (668)
T PLN02260         83 TIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTD-EVYGETDEDADVGNHEASQLLPTNPYSA  161 (668)
T ss_pred             EEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcch-HHhCCCccccccCccccCCCCCCCCcHH
Confidence            9999998653211  122456778999999999998887632344444431 000000000 0  000011223344555


Q ss_pred             eeccHHHHHHHHHHHcCCCCccee-eeEEcccC
Q 022947          192 TMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (289)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg  223 (289)
                      +.+...++-...++..+++..-++ ..|+|.+.
T Consensus       162 sK~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~  194 (668)
T PLN02260        162 TKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQ  194 (668)
T ss_pred             HHHHHHHHHHHHHHHcCCCEEEECcccccCcCC
Confidence            555555555555666677766666 45788764

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=98.10  E-value=3.1e-05  Score=71.91  Aligned_cols=101  Identities=21%  Similarity=0.324  Sum_probs=65.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--hHHhhhhccc------CCceEEEEecCCCHHhhhCCCCE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMD------TNAVVRGFLGQQQLEDALTGMDI  117 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g~~~DL~~~~------~~~~v~~~~~t~d~~eal~~aDi  117 (289)
                      ||||+|||+ |.+|+.++..|+..|+  +|.++|+++..  ....+..+..      ....+..   ++++++.++++|+
T Consensus         1 mmkI~iiG~-G~mG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~D~   74 (325)
T PRK00094          1 MMKIAVLGA-GSWGTALAIVLARNGH--DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA---TTDLAEALADADL   74 (325)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE---eCCHHHHHhCCCE
Confidence            479999998 9999999999999988  89999987521  1111100000      0012222   3466678899999


Q ss_pred             EEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcc
Q 022947          118 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS  168 (289)
Q Consensus       118 VIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~  168 (289)
                      ||++...                ..+.++++.+..+. |+.+++..+|-++.
T Consensus        75 vi~~v~~----------------~~~~~v~~~l~~~~~~~~~vi~~~ngv~~  110 (325)
T PRK00094         75 ILVAVPS----------------QALREVLKQLKPLLPPDAPIVWATKGIEP  110 (325)
T ss_pred             EEEeCCH----------------HHHHHHHHHHHhhcCCCCEEEEEeecccC
Confidence            9998531                22455555666654 67788878776653

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=98.09  E-value=3e-05  Score=75.28  Aligned_cols=111  Identities=20%  Similarity=0.198  Sum_probs=69.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhccc--------------CCceEEEEecCCCHHhh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--------------TNAVVRGFLGQQQLEDA  111 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~--------------~~~~v~~~~~t~d~~ea  111 (289)
                      ++||+|||. |+||.++|..|+..|+  +|+.+|+++..-..+......              ....+..   +++    
T Consensus         3 ~~kI~VIGl-G~~G~~~A~~La~~G~--~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~---~~~----   72 (415)
T PRK11064          3 FETISVIGL-GYIGLPTAAAFASRQK--QVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRA---TTT----   72 (415)
T ss_pred             ccEEEEECc-chhhHHHHHHHHhCCC--EEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceee---ecc----
Confidence            579999998 9999999999999998  999999987211111100000              0111221   222    


Q ss_pred             hCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEe-cCCCcccHHH
Q 022947          112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLI-SNPVNSTVPI  172 (289)
Q Consensus       112 l~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~-tNPvd~~t~~  172 (289)
                      .++||+||+|...|.+...      ..++..+.+.++.+.++. +..+|+.- |-|....-.+
T Consensus        73 ~~~aDvvii~vptp~~~~~------~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~  129 (415)
T PRK11064         73 PEPADAFLIAVPTPFKGDH------EPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQM  129 (415)
T ss_pred             cccCCEEEEEcCCCCCCCC------CcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHH
Confidence            3589999999988754321      124566667777777765 44554443 5566654433

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.08  E-value=5.8e-05  Score=70.68  Aligned_cols=111  Identities=23%  Similarity=0.384  Sum_probs=72.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcc--c--C------CceEEEEecCCCHHhhhCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--D--T------NAVVRGFLGQQQLEDALTGM  115 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~--~--~------~~~v~~~~~t~d~~eal~~a  115 (289)
                      ++||+|+|+ |.=|.++|..|+.+++  +|.|+.+++.  .+.|+...  .  .      .+.+.   .++|+.+++++|
T Consensus         1 ~~kI~ViGa-GswGTALA~~la~ng~--~V~lw~r~~~--~~~~i~~~~~N~~yLp~i~lp~~l~---at~Dl~~a~~~a   72 (329)
T COG0240           1 MMKIAVIGA-GSWGTALAKVLARNGH--EVRLWGRDEE--IVAEINETRENPKYLPGILLPPNLK---ATTDLAEALDGA   72 (329)
T ss_pred             CceEEEEcC-ChHHHHHHHHHHhcCC--eeEEEecCHH--HHHHHHhcCcCccccCCccCCcccc---cccCHHHHHhcC
Confidence            469999998 9999999999999997  9999998762  22223322  1  1      12233   367899999999


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcc-cHHHHHHHHHHh
Q 022947          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS-TVPIAAEVFKKV  180 (289)
Q Consensus       116 DiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~-~t~~~~~~~~~~  180 (289)
                      |+||+..  |              ...+++++++++.+- ++.+++.+|-=.+. ...++++++++.
T Consensus        73 d~iv~av--P--------------s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~  123 (329)
T COG0240          73 DIIVIAV--P--------------SQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEE  123 (329)
T ss_pred             CEEEEEC--C--------------hHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHH
Confidence            9999974  2              344666666665433 56666666532221 112334555554

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=98.07  E-value=5.2e-05  Score=70.88  Aligned_cols=110  Identities=15%  Similarity=0.003  Sum_probs=68.1

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc---hhHHhhhhcc--cCCceEEEE----ecCCCHHhhhCC
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHM--DTNAVVRGF----LGQQQLEDALTG  114 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~---~g~~~DL~~~--~~~~~v~~~----~~t~d~~eal~~  114 (289)
                      .+.++|.|+||+|++|++++..|+..|.  +|+++|+.+.   ......+...  .....+..+    ....++.+.+++
T Consensus         4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~   81 (340)
T PLN02653          4 PPRKVALITGITGQDGSYLTEFLLSKGY--EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDD   81 (340)
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHCCC--EEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHH
Confidence            4456999999999999999999999998  8999987541   1111111100  001112211    111234445554


Q ss_pred             --CCEEEEcCCCCCCCC--CchhhHHHhhHHHHHHHHHHHHHhCC
Q 022947          115 --MDIVIIPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCP  155 (289)
Q Consensus       115 --aDiVIitag~~~~~g--~~r~d~~~~N~~i~~~i~~~i~~~~p  155 (289)
                        .|+||++|+......  ......+..|+.....+++.+.+...
T Consensus        82 ~~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~  126 (340)
T PLN02653         82 IKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQ  126 (340)
T ss_pred             cCCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhcc
Confidence              599999998643221  11233456788888999999888763

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=98.06  E-value=2.2e-05  Score=66.32  Aligned_cols=89  Identities=16%  Similarity=0.226  Sum_probs=58.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      |+||++||. |.+|+.++..|+..|+  +|..+|+++  ....++.+..    ...   .+++.++++++|+||.+..  
T Consensus         1 m~~Ig~IGl-G~mG~~~a~~L~~~g~--~v~~~d~~~--~~~~~~~~~g----~~~---~~s~~e~~~~~dvvi~~v~--   66 (163)
T PF03446_consen    1 MMKIGFIGL-GNMGSAMARNLAKAGY--EVTVYDRSP--EKAEALAEAG----AEV---ADSPAEAAEQADVVILCVP--   66 (163)
T ss_dssp             -BEEEEE---SHHHHHHHHHHHHTTT--EEEEEESSH--HHHHHHHHTT----EEE---ESSHHHHHHHBSEEEE-SS--
T ss_pred             CCEEEEEch-HHHHHHHHHHHHhcCC--eEEeeccch--hhhhhhHHhh----hhh---hhhhhhHhhcccceEeecc--
Confidence            579999998 9999999999999998  999999875  2223333322    222   2467899999999999842  


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHH--HHHhCCCcEEEE
Q 022947          126 RKPGMTRDDLFNINAGIVKTLCEG--IAKCCPKAIVNL  161 (289)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~--i~~~~p~aiviv  161 (289)
                                   +.+.++++...  +....+.+.+++
T Consensus        67 -------------~~~~v~~v~~~~~i~~~l~~g~iii   91 (163)
T PF03446_consen   67 -------------DDDAVEAVLFGENILAGLRPGKIII   91 (163)
T ss_dssp             -------------SHHHHHHHHHCTTHGGGS-TTEEEE
T ss_pred             -------------cchhhhhhhhhhHHhhccccceEEE
Confidence                         34556666666  555554444433

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=98.05  E-value=4.6e-05  Score=70.89  Aligned_cols=114  Identities=20%  Similarity=0.217  Sum_probs=69.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhccc-CCce-EEE-EecCCCHHhhhC--CCCEEE
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD-TNAV-VRG-FLGQQQLEDALT--GMDIVI  119 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~-~~~~-v~~-~~~t~d~~eal~--~aDiVI  119 (289)
                      |||.|+||+|++|++++..|+..|+  +|+++|+..  .......+.+.. .... +.. ......+.++++  ++|+||
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vv   78 (338)
T PRK10675          1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDHAIDTVI   78 (338)
T ss_pred             CeEEEECCCChHHHHHHHHHHHCCC--eEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcCCCCEEE
Confidence            6899999999999999999999887  899998643  111111111111 0111 111 111112334454  689999


Q ss_pred             EcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          120 IPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       120 itag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      ++|+.....  .....+.+..|+.....+++.+++..... ++.+|
T Consensus        79 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~v~~S  123 (338)
T PRK10675         79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKN-LIFSS  123 (338)
T ss_pred             ECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEec
Confidence            998764321  12235678889999999999988765333 44443

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=98.04  E-value=0.00012  Score=67.78  Aligned_cols=175  Identities=17%  Similarity=0.081  Sum_probs=97.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch-hHHhhhhcc-cCCceEEEE----ecCCCHHhhhCCCCEEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHM-DTNAVVRGF----LGQQQLEDALTGMDIVI  119 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~-g~~~DL~~~-~~~~~v~~~----~~t~d~~eal~~aDiVI  119 (289)
                      .++|.|+||+|++|++++..|+..|+  +|++++++... .....+... ....++..+    ....++.+.+++.|+||
T Consensus         5 ~k~vlVtG~~G~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi   82 (325)
T PLN02989          5 GKVVCVTGASGYIASWIVKLLLFRGY--TINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF   82 (325)
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence            46899999999999999999999998  88887766521 111111110 001122221    11234566788999999


Q ss_pred             EcCCCCCCC-C-CchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHH---H-HHHHHHhCCCC------CCc
Q 022947          120 IPAGVPRKP-G-MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPI---A-AEVFKKVGTYD------PKR  187 (289)
Q Consensus       120 itag~~~~~-g-~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~---~-~~~~~~~~~~~------~~k  187 (289)
                      ++||..... . ..-.+.+..|+.....+.+.+.+...-..|+++|.-.......   . ...+.+..-.+      +..
T Consensus        83 h~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~~  162 (325)
T PLN02989         83 HTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEERKQ  162 (325)
T ss_pred             EeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCcCCCCchhHhccccc
Confidence            999854221 1 1123566789999999999887754223444443321110000   0 00000000011      123


Q ss_pred             EEEeeeccHHHHHHHHHHHcCCCCccee-eeEEccc
Q 022947          188 LLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (289)
Q Consensus       188 viG~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~h  222 (289)
                      .+|.+.+...++...+++..+++..-++ ..|+|..
T Consensus       163 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~  198 (325)
T PLN02989        163 WYVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPI  198 (325)
T ss_pred             chHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCC
Confidence            4565555455555555667787776676 5588865

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=98.04  E-value=4.1e-05  Score=71.88  Aligned_cols=104  Identities=19%  Similarity=0.187  Sum_probs=64.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhh----hhcccCCc-eE--EEEecCCCHHhhhCCCCEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTAD----ISHMDTNA-VV--RGFLGQQQLEDALTGMDIV  118 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~D----L~~~~~~~-~v--~~~~~t~d~~eal~~aDiV  118 (289)
                      +|||+|||+ |.+|+.++..|...|+  +|.++|+++......+    +.+..... ..  ..+..+++. ++++++|+|
T Consensus         2 ~mkI~IiG~-G~mG~~~A~~L~~~G~--~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~v   77 (341)
T PRK08229          2 MARICVLGA-GSIGCYLGGRLAAAGA--DVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLV   77 (341)
T ss_pred             CceEEEECC-CHHHHHHHHHHHhcCC--cEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEE
Confidence            579999998 9999999999999997  8999998541111010    00000000 00  001123455 678999999


Q ss_pred             EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCCCccc
Q 022947          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNST  169 (289)
Q Consensus       119 Iitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~-~p~aiviv~tNPvd~~  169 (289)
                      |++...+    .            ..++++.+... .++.+|+..+|..+..
T Consensus        78 il~vk~~----~------------~~~~~~~l~~~~~~~~iii~~~nG~~~~  113 (341)
T PRK08229         78 LVTVKSA----A------------TADAAAALAGHARPGAVVVSFQNGVRNA  113 (341)
T ss_pred             EEEecCc----c------------hHHHHHHHHhhCCCCCEEEEeCCCCCcH
Confidence            9986322    1            12344555555 3677787788987653

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=98.03  E-value=5.7e-05  Score=66.44  Aligned_cols=96  Identities=20%  Similarity=0.294  Sum_probs=64.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      ||+++|+|+ |++|+.++..+...|+  ||.+-..+..+.....-..  ..+.+..   . ..++|.+.+|+||++.  |
T Consensus         1 m~~~~i~Gt-GniG~alA~~~a~ag~--eV~igs~r~~~~~~a~a~~--l~~~i~~---~-~~~dA~~~aDVVvLAV--P   69 (211)
T COG2085           1 MMIIAIIGT-GNIGSALALRLAKAGH--EVIIGSSRGPKALAAAAAA--LGPLITG---G-SNEDAAALADVVVLAV--P   69 (211)
T ss_pred             CcEEEEecc-ChHHHHHHHHHHhCCC--eEEEecCCChhHHHHHHHh--hcccccc---C-ChHHHHhcCCEEEEec--c
Confidence            579999998 9999999999999998  8888766552211110111  1223332   2 3468999999999984  2


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 022947          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV  166 (289)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPv  166 (289)
                                    .+.+.++.+.++..-.+-+||=.|||.
T Consensus        70 --------------~~a~~~v~~~l~~~~~~KIvID~tnp~   96 (211)
T COG2085          70 --------------FEAIPDVLAELRDALGGKIVIDATNPI   96 (211)
T ss_pred             --------------HHHHHhHHHHHHHHhCCeEEEecCCCc
Confidence                          233455555666544477888889995

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=98.03  E-value=8e-05  Score=63.04  Aligned_cols=93  Identities=28%  Similarity=0.315  Sum_probs=65.2

Q ss_pred             EEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEec----CCCHHhhhCCCCEEEEcCCC
Q 022947           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG----QQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~----t~d~~eal~~aDiVIitag~  124 (289)
                      |+|+||+|++|..++..|+.+++  +|+++-+++.  ...+      ...+..+.+    .+++.++++++|.||.++|.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~--~V~~~~R~~~--~~~~------~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~   70 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGH--EVTALVRSPS--KAED------SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP   70 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTS--EEEEEESSGG--GHHH------CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred             eEEECCCChHHHHHHHHHHHCCC--EEEEEecCch--hccc------ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence            78999999999999999999996  9999987652  1121      122222211    12457889999999999876


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      +.+           +....+.+++.+++.... .++++|
T Consensus        71 ~~~-----------~~~~~~~~~~a~~~~~~~-~~v~~s   97 (183)
T PF13460_consen   71 PPK-----------DVDAAKNIIEAAKKAGVK-RVVYLS   97 (183)
T ss_dssp             TTT-----------HHHHHHHHHHHHHHTTSS-EEEEEE
T ss_pred             hcc-----------cccccccccccccccccc-cceeee
Confidence            533           267788888888887644 344333

...

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=98.02  E-value=3.3e-05  Score=71.19  Aligned_cols=121  Identities=12%  Similarity=0.145  Sum_probs=72.1

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhh--hhcccCCceEEE-EecCCCHHhhhCCCCEEEEcCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTAD--ISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~D--L~~~~~~~~v~~-~~~t~d~~eal~~aDiVIitag  123 (289)
                      |||+|+|+ |.+|..++..|...|+  +|.++++.+......+  +........... ....++.++..+++|+||++..
T Consensus         1 mkI~IiG~-G~iG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk   77 (305)
T PRK12921          1 MRIAVVGA-GAVGGTFGGRLLEAGR--DVTFLVRPKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVK   77 (305)
T ss_pred             CeEEEECC-CHHHHHHHHHHHHCCC--ceEEEecHHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEec
Confidence            68999998 9999999999999887  8999998221111111  000000001100 0012355555689999999853


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEE-eee
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG-VTM  193 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~-~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG-~t~  193 (289)
                      ..                .+.++++.+..+ .++..|+.+.|.++....     +.+  .+|++++++ ++.
T Consensus        78 ~~----------------~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~-----l~~--~~~~~~v~~g~~~  126 (305)
T PRK12921         78 AY----------------QLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQ-----LEP--YFGRERVLGGVVF  126 (305)
T ss_pred             cc----------------CHHHHHHHHHhhcCCCCEEEEeeCCCChHHH-----HHH--hCCcccEEEEEEE
Confidence            21                134455555554 367788888999875432     232  266777774 443

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=98.01  E-value=8.7e-05  Score=68.78  Aligned_cols=106  Identities=17%  Similarity=0.121  Sum_probs=67.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcc-cCCceEEEEe----cCCCHHhhhCCCCEEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHM-DTNAVVRGFL----GQQQLEDALTGMDIVI  119 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~-~~~~~v~~~~----~t~d~~eal~~aDiVI  119 (289)
                      .++|.|+||+|++|++++..|+..|+  +|++..++.. ......+... .....+..+.    ....+.++++++|+||
T Consensus         5 ~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi   82 (322)
T PLN02986          5 GKLVCVTGASGYIASWIVKLLLLRGY--TVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVF   82 (322)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEE
Confidence            35899999999999999999999997  7876655442 1121222111 0011222221    1234667788999999


Q ss_pred             EcCCCCCCC-CCchhhHHHhhHHHHHHHHHHHHHh
Q 022947          120 IPAGVPRKP-GMTRDDLFNINAGIVKTLCEGIAKC  153 (289)
Q Consensus       120 itag~~~~~-g~~r~d~~~~N~~i~~~i~~~i~~~  153 (289)
                      ++|+..... .....+++..|+.....+++.+++.
T Consensus        83 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~  117 (322)
T PLN02986         83 HTASPVFFTVKDPQTELIDPALKGTINVLNTCKET  117 (322)
T ss_pred             EeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhc
Confidence            999853211 1122346778999999999988765

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=98.01  E-value=3.5e-05  Score=69.69  Aligned_cols=98  Identities=19%  Similarity=0.254  Sum_probs=67.5

Q ss_pred             EEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCCCCC
Q 022947           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKP  128 (289)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~~~~  128 (289)
                      |.|+||+|++|++++..|+..|+  +|+.++++.......  ..    ..+..... ....++++++|+||+++|.+...
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~--~~----~~~~~~~~-~~~~~~~~~~D~Vvh~a~~~~~~   71 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGH--EVTILTRSPPAGANT--KW----EGYKPWAP-LAESEALEGADAVINLAGEPIAD   71 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCC--EEEEEeCCCCCCCcc--cc----eeeecccc-cchhhhcCCCCEEEECCCCCccc
Confidence            57999999999999999999887  999999876211100  00    00111111 23357789999999999875432


Q ss_pred             C----CchhhHHHhhHHHHHHHHHHHHHhCC
Q 022947          129 G----MTRDDLFNINAGIVKTLCEGIAKCCP  155 (289)
Q Consensus       129 g----~~r~d~~~~N~~i~~~i~~~i~~~~p  155 (289)
                      +    ....++...|+...+.+++.+++...
T Consensus        72 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~  102 (292)
T TIGR01777        72 KRWTEERKQEIRDSRIDTTRALVEAIAAAEQ  102 (292)
T ss_pred             ccCCHHHHHHHHhcccHHHHHHHHHHHhcCC
Confidence            2    12345667899999999999998764

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PRK06194 hypothetical protein; Provisional

Probab=98.01  E-value=7.8e-05  Score=67.69  Aligned_cols=158  Identities=19%  Similarity=0.147  Sum_probs=86.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCC---CHHhhhC------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQ---QLEDALT------  113 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~---d~~eal~------  113 (289)
                      +++|.|+||+|++|++++..|+..|.  +|+++|++..  .....++...  ..++..+. +-+   ++++.++      
T Consensus         6 ~k~vlVtGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~   81 (287)
T PRK06194          6 GKVAVITGAASGFGLAFARIGAALGM--KLVLADVQQDALDRAVAELRAQ--GAEVLGVRTDVSDAAQVEALADAALERF   81 (287)
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999997  8999998752  2222233221  11222221 111   2223333      


Q ss_pred             -CCCEEEEcCCCCCCC---CCch---hhHHHhhHHHHH----HHHHHHHHhCCC-----cEEEEecCCCcccHHHHHHHH
Q 022947          114 -GMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVK----TLCEGIAKCCPK-----AIVNLISNPVNSTVPIAAEVF  177 (289)
Q Consensus       114 -~aDiVIitag~~~~~---g~~r---~d~~~~N~~i~~----~i~~~i~~~~p~-----aiviv~tNPvd~~t~~~~~~~  177 (289)
                       ..|+||++||.....   ..+.   ...+..|+....    .+.+.+.+.+.+     +.++++|.....         
T Consensus        82 g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~---------  152 (287)
T PRK06194         82 GAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGL---------  152 (287)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhc---------
Confidence             479999999874321   1111   223556655444    444445555432     556655543211         


Q ss_pred             HHhCCCCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          178 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       178 ~~~~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                         .+.+..-.++.+..-...+...+++.++.....+++.++
T Consensus       153 ---~~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v  191 (287)
T PRK06194        153 ---LAPPAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVL  191 (287)
T ss_pred             ---cCCCCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEE
Confidence               123333345554433344556667777665555655444

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=98.00  E-value=8.8e-05  Score=68.24  Aligned_cols=167  Identities=10%  Similarity=0.094  Sum_probs=86.2

Q ss_pred             EEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCC-HHhhh-----CCCCEEEEcC
Q 022947           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ-LEDAL-----TGMDIVIIPA  122 (289)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d-~~eal-----~~aDiVIita  122 (289)
                      |.|+||+|++|++++..|+..|+ ..+.++|..........+.+..    +.......+ +++.+     .++|+||++|
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~----~~d~~~~~~~~~~~~~~~~~~~~d~Vih~A   76 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTKFVNLVDLD----IADYMDKEDFLAQIMAGDDFGDIEAIFHEG   76 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhCCC-ceEEEecCCCcchHHHhhhhhh----hhhhhhHHHHHHHHhcccccCCccEEEECc
Confidence            78999999999999999998885 3566778654211101111111    000000011 12222     3799999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHH
Q 022947          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTF  202 (289)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t~lds~R~~~~  202 (289)
                      +.+.........++..|+....++.+.+.+...  .++.+|... +...--.....+.....|...+|.+.....++...
T Consensus        77 ~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~~--~~i~~SS~~-vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~  153 (308)
T PRK11150         77 ACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYASSAA-TYGGRTDDFIEEREYEKPLNVYGYSKFLFDEYVRQ  153 (308)
T ss_pred             eecCCcCCChHHHHHHHHHHHHHHHHHHHHcCC--cEEEEcchH-HhCcCCCCCCccCCCCCCCCHHHHHHHHHHHHHHH
Confidence            854333333445678899999999999887653  344443311 00000000000001122223344443333333334


Q ss_pred             HHHHcCCCCccee-eeEEcccC
Q 022947          203 VAEVLGLDPREVD-VPVVGGHA  223 (289)
Q Consensus       203 lA~~l~v~~~~V~-~~V~G~hg  223 (289)
                      .++..+++...++ ..++|.+.
T Consensus       154 ~~~~~~~~~~~lR~~~vyG~~~  175 (308)
T PRK11150        154 ILPEANSQICGFRYFNVYGPRE  175 (308)
T ss_pred             HHHHcCCCEEEEeeeeecCCCC
Confidence            4444566666666 55778653

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=98.00  E-value=7e-05  Score=70.49  Aligned_cols=174  Identities=17%  Similarity=0.075  Sum_probs=95.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhH--HhhhhcccCCceEEEEe----cCCCHHhhhCCCCEE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVRGFL----GQQQLEDALTGMDIV  118 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~--~~DL~~~~~~~~v~~~~----~t~d~~eal~~aDiV  118 (289)
                      ..|||.|+|++|++|++++..|+..|.  +|++++.+.....  ..++..   ...+..+.    ....+.+++++.|+|
T Consensus         9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~d~V   83 (353)
T PLN02896          9 ATGTYCVTGATGYIGSWLVKLLLQRGY--TVHATLRDPAKSLHLLSKWKE---GDRLRLFRADLQEEGSFDEAVKGCDGV   83 (353)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHhhcc---CCeEEEEECCCCCHHHHHHHHcCCCEE
Confidence            356899999999999999999999997  8888887642111  111211   11222221    112345667889999


Q ss_pred             EEcCCCCCCC---C-Cchh-----hHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccH--------HHHHHHH----
Q 022947          119 IIPAGVPRKP---G-MTRD-----DLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTV--------PIAAEVF----  177 (289)
Q Consensus       119 Iitag~~~~~---g-~~r~-----d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t--------~~~~~~~----  177 (289)
                      |++|+.....   . .+-.     ..+..|+.....+++.+.++..-..++++|.-.-...        ....|-.    
T Consensus        84 ih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~~p~  163 (353)
T PLN02896         84 FHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTPI  163 (353)
T ss_pred             EECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccCCcH
Confidence            9999864221   1 1112     2233445778888888776632224444443110000        0000000    


Q ss_pred             HH-hCCCCCCcEEEeeeccHHHHHHHHHHHcCCCCccee-eeEEcccC
Q 022947          178 KK-VGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (289)
Q Consensus       178 ~~-~~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg  223 (289)
                      .. ....++.-.+|.+.+...++....++..+++..-++ ..|+|.+.
T Consensus       164 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~  211 (353)
T PLN02896        164 DHVWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPFL  211 (353)
T ss_pred             HHhhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCCc
Confidence            00 000112225666666566666667777788777777 44788753

>PLN02778 3,5-epimerase/4-reductase

Probab=98.00  E-value=8.8e-05  Score=68.65  Aligned_cols=91  Identities=21%  Similarity=0.188  Sum_probs=63.1

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhC--CCCEEEEc
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVIIP  121 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~--~aDiVIit  121 (289)
                      ...|||.|+||+|++|++++..|..+|+  +|++...+        +.+..            .+..+++  +.|+||++
T Consensus         7 ~~~~kiLVtG~tGfiG~~l~~~L~~~g~--~V~~~~~~--------~~~~~------------~v~~~l~~~~~D~ViH~   64 (298)
T PLN02778          7 SATLKFLIYGKTGWIGGLLGKLCQEQGI--DFHYGSGR--------LENRA------------SLEADIDAVKPTHVFNA   64 (298)
T ss_pred             CCCCeEEEECCCCHHHHHHHHHHHhCCC--EEEEecCc--------cCCHH------------HHHHHHHhcCCCEEEEC
Confidence            3457999999999999999999999987  77654211        11100            0112222  68999999


Q ss_pred             CCCCCCCC-----CchhhHHHhhHHHHHHHHHHHHHhCCC
Q 022947          122 AGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK  156 (289)
Q Consensus       122 ag~~~~~g-----~~r~d~~~~N~~i~~~i~~~i~~~~p~  156 (289)
                      |+....+.     ....+.+..|+.....+++.+++....
T Consensus        65 Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~  104 (298)
T PLN02778         65 AGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLV  104 (298)
T ss_pred             CcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            98653222     234567889999999999999887543

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.99  E-value=5.6e-05  Score=70.35  Aligned_cols=80  Identities=21%  Similarity=0.302  Sum_probs=60.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      ..|||+|||+ |.+|++++..|...|+  +|.++|+++.                      .++.++++++|+||++.. 
T Consensus         3 ~~m~I~iiG~-G~~G~~lA~~l~~~G~--~V~~~~r~~~----------------------~~~~~~~~~advvi~~vp-   56 (308)
T PRK14619          3 QPKTIAILGA-GAWGSTLAGLASANGH--RVRVWSRRSG----------------------LSLAAVLADADVIVSAVS-   56 (308)
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHHCCC--EEEEEeCCCC----------------------CCHHHHHhcCCEEEEECC-
Confidence            3579999998 9999999999999998  9999998642                      134577889999999842 


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHh--CCCcEEEEecCC
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKC--CPKAIVNLISNP  165 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~--~p~aiviv~tNP  165 (289)
                                     ...++++++.+..+  .++.+++..|+.
T Consensus        57 ---------------~~~~~~v~~~l~~~~~~~~~ivi~~s~g   84 (308)
T PRK14619         57 ---------------MKGVRPVAEQVQALNLPPETIIVTATKG   84 (308)
T ss_pred             ---------------hHHHHHHHHHHHHhcCCCCcEEEEeCCc
Confidence                           12455566666653  467777777763

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=97.99  E-value=3.2e-05  Score=71.39  Aligned_cols=99  Identities=17%  Similarity=0.177  Sum_probs=65.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhC--CCCEEEEcCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVIIPAGV  124 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~--~aDiVIitag~  124 (289)
                      |||.|+||+|++|++++..|...|   +|+.+|+... ....|+.+.            ..+.+.++  +.|+||++|+.
T Consensus         1 m~iLVtG~~GfiGs~l~~~L~~~g---~V~~~~~~~~-~~~~Dl~d~------------~~~~~~~~~~~~D~Vih~Aa~   64 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALAPLG---NLIALDVHST-DYCGDFSNP------------EGVAETVRKIRPDVIVNAAAH   64 (299)
T ss_pred             CeEEEECCCCHHHHHHHHHhhccC---CEEEeccccc-cccCCCCCH------------HHHHHHHHhcCCCEEEECCcc
Confidence            589999999999999999888877   4777876431 011122221            12344555  58999999986


Q ss_pred             CCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          125 PRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       125 ~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      ....  ..........|+.....+++.+++...  .++.+|
T Consensus        65 ~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~--~~v~~S  103 (299)
T PRK09987         65 TAVDKAESEPEFAQLLNATSVEAIAKAANEVGA--WVVHYS  103 (299)
T ss_pred             CCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence            4321  112233456799999999999988753  444443

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=97.98  E-value=7.1e-05  Score=75.12  Aligned_cols=115  Identities=13%  Similarity=0.065  Sum_probs=72.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchh--HHhhhhc-----cc--CCceEEEE----ecCCCHHhh
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISH-----MD--TNAVVRGF----LGQQQLEDA  111 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g--~~~DL~~-----~~--~~~~v~~~----~~t~d~~ea  111 (289)
                      +.+.|.|+||+|++|..++..|+..|+  +|++++++....  ...++..     ..  ...++..+    ...+++.++
T Consensus        79 ~gKvVLVTGATGgIG~aLAr~LLk~G~--~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a  156 (576)
T PLN03209         79 DEDLAFVAGATGKVGSRTVRELLKLGF--RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA  156 (576)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence            456899999999999999999999997  899998876211  1111111     00  00112221    111245567


Q ss_pred             hCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEE
Q 022947          112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL  161 (289)
Q Consensus       112 l~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv  161 (289)
                      +.++|+||+++|........-...+..|......+++.+.+..-..+|++
T Consensus       157 LggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~V  206 (576)
T PLN03209        157 LGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILV  206 (576)
T ss_pred             hcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            89999999999865332111223355677888888888887654444443

>PLN02583 cinnamoyl-CoA reductase

Probab=97.95  E-value=0.00012  Score=67.39  Aligned_cols=104  Identities=17%  Similarity=0.145  Sum_probs=68.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchh----HHhhhhcccCCceEEEE----ecCCCHHhhhCCCCEE
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG----VTADISHMDTNAVVRGF----LGQQQLEDALTGMDIV  118 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g----~~~DL~~~~~~~~v~~~----~~t~d~~eal~~aDiV  118 (289)
                      ++|.|+||+|++|++++..|+.+|+  +|++++++....    ...++...  ...+..+    ....++.+++.++|.|
T Consensus         7 k~vlVTGatG~IG~~lv~~Ll~~G~--~V~~~~R~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~d~~~~~~~l~~~d~v   82 (297)
T PLN02583          7 KSVCVMDASGYVGFWLVKRLLSRGY--TVHAAVQKNGETEIEKEIRGLSCE--EERLKVFDVDPLDYHSILDALKGCSGL   82 (297)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEEcCchhhhHHHHHHhcccC--CCceEEEEecCCCHHHHHHHHcCCCEE
Confidence            4799999999999999999999998  888887643111    11222110  1122211    1123456789999999


Q ss_pred             EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC
Q 022947          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC  154 (289)
Q Consensus       119 Iitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~  154 (289)
                      +.+++.+........+++..|+.....+.+.+.+..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~  118 (297)
T PLN02583         83 FCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTD  118 (297)
T ss_pred             EEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence            987654432111234678889999999999988763

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=97.94  E-value=0.00014  Score=66.85  Aligned_cols=102  Identities=19%  Similarity=0.207  Sum_probs=63.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccC---CceEEE-EecCCCHHhhhCCCCEEEEcC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT---NAVVRG-FLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~---~~~v~~-~~~t~d~~eal~~aDiVIita  122 (289)
                      |||+|+|+ |.+|+.++..|...|+  +|.++|+++..-..  +.....   ...... ...+++..+ ++++|+||++.
T Consensus         1 m~I~IiG~-G~~G~~~a~~L~~~g~--~V~~~~r~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~d~vila~   74 (304)
T PRK06522          1 MKIAILGA-GAIGGLFGAALAQAGH--DVTLVARRGAHLDA--LNENGLRLEDGEITVPVLAADDPAE-LGPQDLVILAV   74 (304)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECChHHHHH--HHHcCCcccCCceeecccCCCChhH-cCCCCEEEEec
Confidence            58999998 9999999999999887  99999985411110  111000   001110 011334534 49999999985


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCCCcccH
Q 022947          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNSTV  170 (289)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~-~p~aiviv~tNPvd~~t  170 (289)
                      ...                -+.++++.+..+ .++..|+...|.++...
T Consensus        75 k~~----------------~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~  107 (304)
T PRK06522         75 KAY----------------QLPAALPSLAPLLGPDTPVLFLQNGVGHLE  107 (304)
T ss_pred             ccc----------------cHHHHHHHHhhhcCCCCEEEEecCCCCcHH
Confidence            321                134455555554 36778888899987654

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.92  E-value=0.00011  Score=70.32  Aligned_cols=107  Identities=16%  Similarity=0.279  Sum_probs=69.0

Q ss_pred             ccccccccccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCC-----ccEEEEEeCCCc---hhHHhhhhcc--c------
Q 022947           31 SGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVNT---PGVTADISHM--D------   94 (289)
Q Consensus        31 ~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~-----~~eI~LvD~~~~---~g~~~DL~~~--~------   94 (289)
                      |.|.+..|...      ||+|||+ |.-|+++|..|...+.     ..+|.|+.+++.   +..+.++.+.  .      
T Consensus         2 ~~~~~~~~~~~------ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~   74 (365)
T PTZ00345          2 SLFQKLRCGPL------KVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPG   74 (365)
T ss_pred             cchhhcccCCC------eEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCC
Confidence            45666666654      9999998 9999999999998761     138899988762   1223344322  1      


Q ss_pred             --CCceEEEEecCCCHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHH--hC-CCcEEEEec
Q 022947           95 --TNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAK--CC-PKAIVNLIS  163 (289)
Q Consensus        95 --~~~~v~~~~~t~d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~--~~-p~aiviv~t  163 (289)
                        ...++..   ++|+.+++++||+||++.  |              ...+++++++++.  +- ++.+++.++
T Consensus        75 ~~Lp~ni~~---tsdl~eav~~aDiIvlAV--P--------------sq~l~~vl~~l~~~~~l~~~~~iIS~a  129 (365)
T PTZ00345         75 IKLPDNIVA---VSDLKEAVEDADLLIFVI--P--------------HQFLESVLSQIKENNNLKKHARAISLT  129 (365)
T ss_pred             CcCCCceEE---ecCHHHHHhcCCEEEEEc--C--------------hHHHHHHHHHhccccccCCCCEEEEEe
Confidence              1123332   457888999999999974  2              2346666666665  32 344555443

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.90  E-value=0.00015  Score=69.52  Aligned_cols=150  Identities=20%  Similarity=0.152  Sum_probs=82.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-chhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      |+||.|||+ |+||+.+|..|++++- .+|.+.|+.. ....+.+..+.......-...+...+.+.+++.|+||.++..
T Consensus         1 m~~ilviGa-G~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~   78 (389)
T COG1748           1 MMKILVIGA-GGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPP   78 (389)
T ss_pred             CCcEEEECC-chhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCc
Confidence            579999999 9999999999999885 5999999975 222222222111111111111223456888999999999743


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe--e----eccHHH
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV--T----MLDVVR  198 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~--t----~lds~R  198 (289)
                      .            .+.    .+++.+.+..-+  ++-.|+-.+.. +-.-+.++++      .+.++  |    -++.. 
T Consensus        79 ~------------~~~----~i~ka~i~~gv~--yvDts~~~~~~-~~~~~~a~~A------git~v~~~G~dPGi~nv-  132 (389)
T COG1748          79 F------------VDL----TILKACIKTGVD--YVDTSYYEEPP-WKLDEEAKKA------GITAVLGCGFDPGITNV-  132 (389)
T ss_pred             h------------hhH----HHHHHHHHhCCC--EEEcccCCchh-hhhhHHHHHc------CeEEEcccCcCcchHHH-
Confidence            2            122    233333333322  44456555553 3333444433      22222  1    23222 


Q ss_pred             HHHHHHHHcCCCCcceeee--EEcccC
Q 022947          199 ANTFVAEVLGLDPREVDVP--VVGGHA  223 (289)
Q Consensus       199 ~~~~lA~~l~v~~~~V~~~--V~G~hg  223 (289)
                      +-...++.+.-..++++.+  -+|+|+
T Consensus       133 ~a~~a~~~~~~~i~si~iy~g~~g~~~  159 (389)
T COG1748         133 LAAYAAKELFDEIESIDIYVGGLGEHG  159 (389)
T ss_pred             HHHHHHHHhhccccEEEEEEecCCCCC
Confidence            3344455555356666655  566888

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.89  E-value=0.0001  Score=69.72  Aligned_cols=100  Identities=18%  Similarity=0.189  Sum_probs=67.6

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcc----cC-------CceEEEEecCCCHHhhh
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM----DT-------NAVVRGFLGQQQLEDAL  112 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~----~~-------~~~v~~~~~t~d~~eal  112 (289)
                      +.+|||+|+|+ |.+|+.++..|...+   +++++..++..  ..++...    ..       ...+..   ++|+.+++
T Consensus         5 ~~~mkI~IiGa-Ga~G~alA~~La~~g---~v~l~~~~~~~--~~~i~~~~~~~~~l~~~~~l~~~i~~---t~d~~~a~   75 (341)
T PRK12439          5 KREPKVVVLGG-GSWGTTVASICARRG---PTLQWVRSAET--ADDINDNHRNSRYLGNDVVLSDTLRA---TTDFAEAA   75 (341)
T ss_pred             cCCCeEEEECC-CHHHHHHHHHHHHCC---CEEEEeCCHHH--HHHHHhcCCCcccCCCCcccCCCeEE---ECCHHHHH
Confidence            34689999998 999999999999887   36777765421  1112211    00       112222   45777889


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcc
Q 022947          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS  168 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~  168 (289)
                      +++|+||++.-                ...+++++++++.+- ++..++.++|-++.
T Consensus        76 ~~aDlVilavp----------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~  116 (341)
T PRK12439         76 NCADVVVMGVP----------------SHGFRGVLTELAKELRPWVPVVSLVKGLEQ  116 (341)
T ss_pred             hcCCEEEEEeC----------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCcC
Confidence            99999999852                335667777777654 67788888998764

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.89  E-value=0.00011  Score=68.72  Aligned_cols=100  Identities=14%  Similarity=0.321  Sum_probs=65.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhc--------ccCCceEEEEecCCCHHhhh-CCCCE
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH--------MDTNAVVRGFLGQQQLEDAL-TGMDI  117 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~--------~~~~~~v~~~~~t~d~~eal-~~aDi  117 (289)
                      |||+|||+ |.+|+.++..|...|+  +|.++++++..-..+.-.+        ......++.   ++++.+++ .++|+
T Consensus         1 MkI~IiGa-Ga~G~ala~~L~~~g~--~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~Dl   74 (326)
T PRK14620          1 MKISILGA-GSFGTAIAIALSSKKI--SVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISV---KSAIDEVLSDNATC   74 (326)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCC--eEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEE---eCCHHHHHhCCCCE
Confidence            58999998 9999999999999987  8999998652111111111        001112332   34666666 58999


Q ss_pred             EEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHH-h-CCCcEEEEecCCCcc
Q 022947          118 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAK-C-CPKAIVNLISNPVNS  168 (289)
Q Consensus       118 VIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~-~-~p~aiviv~tNPvd~  168 (289)
                      ||++.-                ...+.++++.+.. + .++..++..+|=.+.
T Consensus        75 iiiavk----------------s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~  111 (326)
T PRK14620         75 IILAVP----------------TQQLRTICQQLQDCHLKKNTPILICSKGIEK  111 (326)
T ss_pred             EEEEeC----------------HHHHHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence            999851                2335566666665 4 467777778887643

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=97.86  E-value=0.00015  Score=67.64  Aligned_cols=121  Identities=16%  Similarity=0.227  Sum_probs=71.8

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHh---hhhcccCCceEEEEecCCCHHhhhCCCCEEEE
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA---DISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~---DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIi  120 (289)
                      +..|||+|+|+ |.||..++..|...|+  +|.+++++..+....   .+........+......++. ++...+|+||+
T Consensus         3 ~~~m~I~IiG~-GaiG~~lA~~L~~~g~--~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil   78 (313)
T PRK06249          3 SETPRIGIIGT-GAIGGFYGAMLARAGF--DVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLV   78 (313)
T ss_pred             CcCcEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEE
Confidence            44579999998 9999999999999887  999998865211100   01000000011000011232 45789999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022947          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (289)
Q Consensus       121 tag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~-~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~  191 (289)
                      +.-..    +            ..+.++.++.. .|++.++...|=++.--     .+.+  -+|+++|++-
T Consensus        79 avK~~----~------------~~~~~~~l~~~~~~~~~iv~lqNG~~~~e-----~l~~--~~~~~~v~~g  127 (313)
T PRK06249         79 GLKTT----A------------NALLAPLIPQVAAPDAKVLLLQNGLGVEE-----QLRE--ILPAEHLLGG  127 (313)
T ss_pred             EecCC----C------------hHhHHHHHhhhcCCCCEEEEecCCCCcHH-----HHHH--HCCCCcEEEE
Confidence            85321    1            12344444443 37888888889877542     2333  2677887753

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=97.86  E-value=9.3e-05  Score=67.11  Aligned_cols=95  Identities=22%  Similarity=0.294  Sum_probs=66.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCC--CEEEEcCCCC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGM--DIVIIPAGVP  125 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~a--DiVIitag~~  125 (289)
                      ||.|+||+|++|++++..|+..|+  +|+++++..     .|+.+.            .++.++++++  |+||++++..
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~--~v~~~~r~~-----~d~~~~------------~~~~~~~~~~~~d~vi~~a~~~   61 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGR--VVVALTSSQ-----LDLTDP------------EALERLLRAIRPDAVVNTAAYT   61 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCC--EEEEeCCcc-----cCCCCH------------HHHHHHHHhCCCCEEEECCccc
Confidence            689999999999999999998887  899887641     222221            2345566665  9999999864


Q ss_pred             CCCC--CchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          126 RKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       126 ~~~g--~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      ....  ......+..|+.....+++.+++...  .++++|
T Consensus        62 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~S   99 (287)
T TIGR01214        62 DVDGAESDPEKAFAVNALAPQNLARAAARHGA--RLVHIS   99 (287)
T ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Confidence            3221  12345677889999999998877653  344444

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.86  E-value=0.00012  Score=68.57  Aligned_cols=98  Identities=20%  Similarity=0.232  Sum_probs=62.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcc------cC--CceEEEEecCCCHHhhhCCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM------DT--NAVVRGFLGQQQLEDALTGMD  116 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~------~~--~~~v~~~~~t~d~~eal~~aD  116 (289)
                      .+|||+|||+ |.+|+.++..|+..|+  +|.++|+++.......-.+.      ..  ..++..   ++++.++++++|
T Consensus         3 ~~m~I~iIG~-G~mG~~ia~~L~~~G~--~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~---~~~~~e~~~~aD   76 (328)
T PRK14618          3 HGMRVAVLGA-GAWGTALAVLAASKGV--PVRLWARRPEFAAALAAERENREYLPGVALPAELYP---TADPEEALAGAD   76 (328)
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEE---eCCHHHHHcCCC
Confidence            3579999998 9999999999999998  99999997522111111100      00  111222   346778889999


Q ss_pred             EEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 022947          117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (289)
Q Consensus       117 iVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd  167 (289)
                      +||++....                .++++++.   ..|..+++.++|.++
T Consensus        77 ~Vi~~v~~~----------------~~~~v~~~---l~~~~~vi~~~~Gi~  108 (328)
T PRK14618         77 FAVVAVPSK----------------ALRETLAG---LPRALGYVSCAKGLA  108 (328)
T ss_pred             EEEEECchH----------------HHHHHHHh---cCcCCEEEEEeeccc
Confidence            999985211                12333333   336677787888654

>PLN02686 cinnamoyl-CoA reductase

Probab=97.86  E-value=0.00016  Score=68.92  Aligned_cols=176  Identities=14%  Similarity=0.091  Sum_probs=94.8

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch-hHHhhhhcc---c-CCceEEEE----ecCCCHHhhhCC
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHM---D-TNAVVRGF----LGQQQLEDALTG  114 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~-g~~~DL~~~---~-~~~~v~~~----~~t~d~~eal~~  114 (289)
                      .++++|.|+||+|++|++++..|+..|+  +|+++..+... ....++...   . ....+..+    ....++.+++++
T Consensus        51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~--~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~~  128 (367)
T PLN02686         51 AEARLVCVTGGVSFLGLAIVDRLLRHGY--SVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAFDG  128 (367)
T ss_pred             CCCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHHHHh
Confidence            4467999999999999999999999998  88776554311 111122110   0 00112211    112235567889


Q ss_pred             CCEEEEcCCCCCCCCC--chhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCCC-cccH--------HHHHHHHH--Hh
Q 022947          115 MDIVIIPAGVPRKPGM--TRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPV-NSTV--------PIAAEVFK--KV  180 (289)
Q Consensus       115 aDiVIitag~~~~~g~--~r~d~~~~N~~i~~~i~~~i~~~-~p~aiviv~tNPv-d~~t--------~~~~~~~~--~~  180 (289)
                      +|.||++++.....+.  ....+...|+...+.+++.+.+. ... .++.+|... .+.-        ..+.+-.+  ..
T Consensus       129 ~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~-r~V~~SS~~~~vyg~~~~~~~~~~i~E~~~~~~~  207 (367)
T PLN02686        129 CAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVR-KCVFTSSLLACVWRQNYPHDLPPVIDEESWSDES  207 (367)
T ss_pred             ccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCcc-EEEEeccHHHhcccccCCCCCCcccCCCCCCChh
Confidence            9999998875422221  12344567889999999998875 333 333333321 0000        00000000  00


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHcCCCCccee-eeEEccc
Q 022947          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (289)
Q Consensus       181 ~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~h  222 (289)
                      .-.++...+|.+.+...++-..+++..|++..-++ ..|+|..
T Consensus       208 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vyGp~  250 (367)
T PLN02686        208 FCRDNKLWYALGKLKAEKAAWRAARGKGLKLATICPALVTGPG  250 (367)
T ss_pred             hcccccchHHHHHHHHHHHHHHHHHhcCceEEEEcCCceECCC
Confidence            00011122344444445555555666788777776 5688875

>PRK07201 short chain dehydrogenase; Provisional

Probab=97.85  E-value=0.00018  Score=73.07  Aligned_cols=111  Identities=14%  Similarity=0.113  Sum_probs=69.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHHh--CCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecC----------CCHHhhhCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKI--NPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ----------QQLEDALTG  114 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~--~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t----------~d~~eal~~  114 (289)
                      |||.|+||+|++|++++..|+.  .+.  +|++++++.......++.......++..+.+.          .++ +.+++
T Consensus         1 m~ILVTGatGfIG~~lv~~Ll~~~~g~--~V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~-~~l~~   77 (657)
T PRK07201          1 MRYFVTGGTGFIGRRLVSRLLDRRREA--TVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADI-AELGD   77 (657)
T ss_pred             CeEEEeCCccHHHHHHHHHHHhcCCCC--EEEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHH-HHhcC
Confidence            5899999999999999998884  555  89999986522222222111000112221110          122 23489


Q ss_pred             CCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEE
Q 022947          115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL  161 (289)
Q Consensus       115 aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv  161 (289)
                      +|+||++|+.... .....+....|+...+.+++.+.+.....++.+
T Consensus        78 ~D~Vih~Aa~~~~-~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~~  123 (657)
T PRK07201         78 IDHVVHLAAIYDL-TADEEAQRAANVDGTRNVVELAERLQAATFHHV  123 (657)
T ss_pred             CCEEEECceeecC-CCCHHHHHHHHhHHHHHHHHHHHhcCCCeEEEE
Confidence            9999999986422 223445667899999999998887654444433

>PRK07985 oxidoreductase; Provisional

Probab=97.85  E-value=0.00077  Score=62.06  Aligned_cols=146  Identities=21%  Similarity=0.137  Sum_probs=81.1

Q ss_pred             hhcCCCcccccccccccccc-------------ccccCCC-----CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEE
Q 022947           17 AHLHPPTLQIEGESSGLGRM-------------DCRAKGG-----SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY   78 (289)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~-----~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~Lv   78 (289)
                      .||..||.|.-+-+.++.++             +|..+..     .+.+++.|+||+|.+|..++..|+..|.  +|++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vlITGas~gIG~aia~~L~~~G~--~Vi~~   79 (294)
T PRK07985          2 SHLKDPTTQYYTGEYPKQKQPTPGIQAKMTPVPDCGEKTYVGSGRLKDRKALVTGGDSGIGRAAAIAYAREGA--DVAIS   79 (294)
T ss_pred             CcccCcHHHHhccccccccccccCcccccCCcccccccccccCCccCCCEEEEECCCCcHHHHHHHHHHHCCC--EEEEe
Confidence            37777777777666555444             2332211     2236899999999999999999999997  88888


Q ss_pred             eCCCc--h-hHHhhhhcccCCceEEEEe-cCCCH----------HhhhCCCCEEEEcCCCCCC--C--CCch---hhHHH
Q 022947           79 DVVNT--P-GVTADISHMDTNAVVRGFL-GQQQL----------EDALTGMDIVIIPAGVPRK--P--GMTR---DDLFN  137 (289)
Q Consensus        79 D~~~~--~-g~~~DL~~~~~~~~v~~~~-~t~d~----------~eal~~aDiVIitag~~~~--~--g~~r---~d~~~  137 (289)
                      +.+..  . ....++.... ...+..+. +-+|.          .+.+...|++|+.+|....  +  ..+.   ...+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~  158 (294)
T PRK07985         80 YLPVEEEDAQDVKKIIEEC-GRKAVLLPGDLSDEKFARSLVHEAHKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFA  158 (294)
T ss_pred             cCCcchhhHHHHHHHHHHc-CCeEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHH
Confidence            76531  1 1111111111 11121111 11121          1223567999999986321  1  1122   23466


Q ss_pred             hhHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 022947          138 INAGIVKTLCEGIAKCC-PKAIVNLISNP  165 (289)
Q Consensus       138 ~N~~i~~~i~~~i~~~~-p~aiviv~tNP  165 (289)
                      .|+.....+.+.+..+- ..+.|+++|..
T Consensus       159 ~N~~g~~~l~~~~~~~m~~~g~iv~iSS~  187 (294)
T PRK07985        159 INVFALFWLTQEAIPLLPKGASIITTSSI  187 (294)
T ss_pred             HHhHHHHHHHHHHHHhhhcCCEEEEECCc
Confidence            77765555555554432 34667766643

>PLN02240 UDP-glucose 4-epimerase

Probab=97.80  E-value=0.00022  Score=66.61  Aligned_cols=114  Identities=19%  Similarity=0.139  Sum_probs=70.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hh---HHhhhhcccCCceEEEE----ecCCCHHhhhC--C
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PG---VTADISHMDTNAVVRGF----LGQQQLEDALT--G  114 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g---~~~DL~~~~~~~~v~~~----~~t~d~~eal~--~  114 (289)
                      .+||.|+||+|++|++++..|+..|.  +|+++|+...  ..   ...++.... ...+..+    ....++.+.++  +
T Consensus         5 ~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~l~~~~~~~~   81 (352)
T PLN02240          5 GRTILVTGGAGYIGSHTVLQLLLAGY--KVVVIDNLDNSSEEALRRVKELAGDL-GDNLVFHKVDLRDKEALEKVFASTR   81 (352)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCcchHHHHHHHHHhhccc-CccceEEecCcCCHHHHHHHHHhCC
Confidence            46999999999999999999999887  8999986431  11   111111100 1112211    11123334444  6


Q ss_pred             CCEEEEcCCCCCCC-C-CchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          115 MDIVIIPAGVPRKP-G-MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       115 aDiVIitag~~~~~-g-~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      +|+||++|+..... . ....+.+..|+.....+++.+++.....+ +.+|
T Consensus        82 ~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-v~~S  131 (352)
T PLN02240         82 FDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKL-VFSS  131 (352)
T ss_pred             CCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEE-EEEc
Confidence            89999999864221 1 22345778899999999998877654433 4444

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=97.79  E-value=0.00025  Score=67.73  Aligned_cols=115  Identities=20%  Similarity=0.251  Sum_probs=75.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc------hhHH----hhhhc----ccCCceEEEEecCCCHHhh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT------PGVT----ADISH----MDTNAVVRGFLGQQQLEDA  111 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~------~g~~----~DL~~----~~~~~~v~~~~~t~d~~ea  111 (289)
                      .++|+|||- |+||..+|..++..|.  .|+-+|+++.      .|+.    .++..    .....+++.   |+|+ +.
T Consensus         9 ~~~I~ViGL-GYVGLPlA~~fA~~G~--~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lra---Ttd~-~~   81 (436)
T COG0677           9 SATIGVIGL-GYVGLPLAAAFASAGF--KVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRA---TTDP-EE   81 (436)
T ss_pred             ceEEEEEcc-ccccHHHHHHHHHcCC--ceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceE---ecCh-hh
Confidence            379999998 9999999999999998  9999999971      2221    11111    111335554   4576 66


Q ss_pred             hCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcE--EEEecCCCcccHHHH
Q 022947          112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI--VNLISNPVNSTVPIA  173 (289)
Q Consensus       112 l~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~ai--viv~tNPvd~~t~~~  173 (289)
                      ++.||++++|.-+|.+...      +-++..+.+-++.|.++-..+-  |+=.|-|....-.++
T Consensus        82 l~~~dv~iI~VPTPl~~~~------~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~  139 (436)
T COG0677          82 LKECDVFIICVPTPLKKYR------EPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVV  139 (436)
T ss_pred             cccCCEEEEEecCCcCCCC------CCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHH
Confidence            8899999999887765421      1234556666666666654333  333477777654444

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=97.79  E-value=0.00014  Score=66.68  Aligned_cols=64  Identities=19%  Similarity=0.233  Sum_probs=45.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      |||+|||. |.+|.+++..|...|+  +|.++|+++. ...+.+...      +..  .+++. +++++||+||++.
T Consensus         1 m~I~IIG~-G~mG~sla~~L~~~g~--~V~~~d~~~~~~~~a~~~g~------~~~--~~~~~-~~~~~aDlVilav   65 (279)
T PRK07417          1 MKIGIVGL-GLIGGSLGLDLRSLGH--TVYGVSRRESTCERAIERGL------VDE--ASTDL-SLLKDCDLVILAL   65 (279)
T ss_pred             CeEEEEee-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHCCC------ccc--ccCCH-hHhcCCCEEEEcC
Confidence            58999998 9999999999998887  8999998752 112221111      111  12344 5789999999985

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=97.78  E-value=0.00017  Score=68.43  Aligned_cols=71  Identities=24%  Similarity=0.378  Sum_probs=48.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCC------CccEEEEEeCCC---chhHHhhhh--cccC--------CceEEEEecCCCH
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINP------LVSVLHLYDVVN---TPGVTADIS--HMDT--------NAVVRGFLGQQQL  108 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g------~~~eI~LvD~~~---~~g~~~DL~--~~~~--------~~~v~~~~~t~d~  108 (289)
                      ||+|||+ |..|.++|..|+.++      +..+|.|+.+++   .......+.  |...        ..++..   ++|+
T Consensus         1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~a---t~dl   76 (342)
T TIGR03376         1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVA---VPDL   76 (342)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEE---ECCH
Confidence            6999998 999999999999877      113999998844   111222222  1110        112332   4688


Q ss_pred             HhhhCCCCEEEEcC
Q 022947          109 EDALTGMDIVIIPA  122 (289)
Q Consensus       109 ~eal~~aDiVIita  122 (289)
                      ++++++||+||++.
T Consensus        77 ~eal~~ADiIIlAV   90 (342)
T TIGR03376        77 VEAAKGADILVFVI   90 (342)
T ss_pred             HHHHhcCCEEEEEC
Confidence            89999999999984

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.77  E-value=0.00011  Score=59.06  Aligned_cols=72  Identities=19%  Similarity=0.265  Sum_probs=46.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcc--cCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--DTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~--~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      ||+|+||+|++|+.+...|...+.+.-+.+++.....|+.+.-.+.  .....+....  .+. +.+.++|+||+|.
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~Dvvf~a~   74 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVED--ADP-EELSDVDVVFLAL   74 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEE--TSG-HHHTTESEEEE-S
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEee--cch-hHhhcCCEEEecC
Confidence            7999999999999999999998777667777765533332221211  1112222211  243 6789999999985

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK08643 acetoin reductase; Validated

Probab=97.76  E-value=0.0012  Score=58.74  Aligned_cols=115  Identities=21%  Similarity=0.224  Sum_probs=65.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhh-------hC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------LT  113 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------l~  113 (289)
                      +++.|+|++|.+|..++..|+..|.  +|+++|++..  .....++.+..  ..+..+. +-++   +.+.       +.
T Consensus         3 k~~lItGas~giG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   78 (256)
T PRK08643          3 KVALVTGAGQGIGFAIAKRLVEDGF--KVAIVDYNEETAQAAADKLSKDG--GKAIAVKADVSDRDQVFAAVRQVVDTFG   78 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4789999999999999999999997  8999998762  12222333211  1111111 1111   1122       24


Q ss_pred             CCCEEEEcCCCCCC-CC-C-c---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecCC
Q 022947          114 GMDIVIIPAGVPRK-PG-M-T---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       114 ~aDiVIitag~~~~-~g-~-~---r~d~~~~N~~i~----~~i~~~i~~~~p~aiviv~tNP  165 (289)
                      +.|++|+++|.... +- . +   -...+..|+...    +.+.+.+.+..+++.++++|..
T Consensus        79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~  140 (256)
T PRK08643         79 DLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQ  140 (256)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECcc
Confidence            68999999986422 11 1 1   122445565543    3344444443445677776654

>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]

Probab=97.75  E-value=9.7e-05  Score=67.68  Aligned_cols=111  Identities=16%  Similarity=0.094  Sum_probs=67.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      .+||+|+||+|||||+++-.|+..|+  +|+.+|..-. +....+.|...++...... .+-...-+..+|-|+..|...
T Consensus        27 ~lrI~itGgaGFIgSHLvdkLm~egh--~VIa~Dn~ft-g~k~n~~~~~~~~~fel~~-hdv~~pl~~evD~IyhLAapa  102 (350)
T KOG1429|consen   27 NLRILITGGAGFIGSHLVDKLMTEGH--EVIALDNYFT-GRKENLEHWIGHPNFELIR-HDVVEPLLKEVDQIYHLAAPA  102 (350)
T ss_pred             CcEEEEecCcchHHHHHHHHHHhcCC--eEEEEecccc-cchhhcchhccCcceeEEE-eechhHHHHHhhhhhhhccCC
Confidence            47999999999999999999999997  9999998652 2223344544334333221 111235689999999987643


Q ss_pred             CCCC--CchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEe
Q 022947          126 RKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI  162 (289)
Q Consensus       126 ~~~g--~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~  162 (289)
                      ..++  .+-.+.+..|.-.........++.+  +.++.+
T Consensus       103 sp~~y~~npvktIktN~igtln~lglakrv~--aR~l~a  139 (350)
T KOG1429|consen  103 SPPHYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARFLLA  139 (350)
T ss_pred             CCcccccCccceeeecchhhHHHHHHHHHhC--ceEEEe
Confidence            3222  2223334445444444444444443  455544

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=97.70  E-value=0.00046  Score=66.40  Aligned_cols=112  Identities=19%  Similarity=0.129  Sum_probs=68.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--h--HHhhhhcccCCceEE--EEecCCCHHhhhC----C
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--G--VTADISHMDTNAVVR--GFLGQQQLEDALT----G  114 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g--~~~DL~~~~~~~~v~--~~~~t~d~~eal~----~  114 (289)
                      +.+||.|+||+|++|+.++..|+.+|+  +|++++++...  .  ...++........+.  .....+++.++++    +
T Consensus        59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~~  136 (390)
T PLN02657         59 KDVTVLVVGATGYIGKFVVRELVRRGY--NVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGDP  136 (390)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCCC
Confidence            357999999999999999999999997  89999986521  1  011111100011111  1111223445566    5


Q ss_pred             CCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEE
Q 022947          115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL  161 (289)
Q Consensus       115 aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv  161 (289)
                      +|+||++++.+...   ..+.+..|....+.+++.+++..-.-+|++
T Consensus       137 ~D~Vi~~aa~~~~~---~~~~~~vn~~~~~~ll~aa~~~gv~r~V~i  180 (390)
T PLN02657        137 VDVVVSCLASRTGG---VKDSWKIDYQATKNSLDAGREVGAKHFVLL  180 (390)
T ss_pred             CcEEEECCccCCCC---CccchhhHHHHHHHHHHHHHHcCCCEEEEE
Confidence            99999988753211   123355678888888888887754434433

>PLN02253 xanthoxin dehydrogenase

Probab=97.69  E-value=0.001  Score=60.20  Aligned_cols=146  Identities=19%  Similarity=0.203  Sum_probs=79.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEE----ecCCCHHhhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGF----LGQQQLEDAL-------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~----~~t~d~~eal-------  112 (289)
                      .+++.|+|++|.+|..++..|+..|.  +|+++|+++.  .....++..   ..++..+    ....+.++++       
T Consensus        18 ~k~~lItGas~gIG~~la~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~~~   92 (280)
T PLN02253         18 GKVALVTGGATGIGESIVRLFHKHGA--KVCIVDLQDDLGQNVCDSLGG---EPNVCFFHCDVTVEDDVSRAVDFTVDKF   92 (280)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhcC---CCceEEEEeecCCHHHHHHHHHHHHHHh
Confidence            45899999999999999999999997  8999998652  111222211   1112211    1111222323       


Q ss_pred             CCCCEEEEcCCCCCCC-C----Cc---hhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecCCCcccHHHHHHHHHHhC
Q 022947          113 TGMDIVIIPAGVPRKP-G----MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (289)
Q Consensus       113 ~~aDiVIitag~~~~~-g----~~---r~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tNPvd~~t~~~~~~~~~~~  181 (289)
                      ...|++|++||..... +    .+   -...+..|+.....+.+.+.+.   ...+.+++++......            
T Consensus        93 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~~------------  160 (280)
T PLN02253         93 GTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASAI------------  160 (280)
T ss_pred             CCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhcc------------
Confidence            3689999999875321 1    11   1235666765544444433322   1345666655433211            


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHcC
Q 022947          182 TYDPKRLLGVTMLDVVRANTFVAEVLG  208 (289)
Q Consensus       182 ~~~~~kviG~t~lds~R~~~~lA~~l~  208 (289)
                      +.+....++.+..-...+-+.++++++
T Consensus       161 ~~~~~~~Y~~sK~a~~~~~~~la~e~~  187 (280)
T PLN02253        161 GGLGPHAYTGSKHAVLGLTRSVAAELG  187 (280)
T ss_pred             cCCCCcccHHHHHHHHHHHHHHHHHhh
Confidence            122223455544334455666777764

>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

Probab=97.68  E-value=0.00038  Score=63.52  Aligned_cols=150  Identities=15%  Similarity=0.130  Sum_probs=83.4

Q ss_pred             EEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhC--CCCEEEEcCCCCCC-
Q 022947           51 VLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVIIPAGVPRK-  127 (289)
Q Consensus        51 IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~--~aDiVIitag~~~~-  127 (289)
                      |+||+|+||++++..|+..|.  +++++....    ..|+.+.            .++.+.++  +.|+||++|+.... 
T Consensus         2 ItGa~GfiG~~l~~~L~~~g~--~v~~~~~~~----~~Dl~~~------------~~l~~~~~~~~~d~Vih~A~~~~~~   63 (306)
T PLN02725          2 VAGHRGLVGSAIVRKLEALGF--TNLVLRTHK----ELDLTRQ------------ADVEAFFAKEKPTYVILAAAKVGGI   63 (306)
T ss_pred             cccCCCcccHHHHHHHHhCCC--cEEEeeccc----cCCCCCH------------HHHHHHHhccCCCEEEEeeeeeccc
Confidence            899999999999999988886  555443211    1233221            12334444  57999999976421 


Q ss_pred             --CCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC------CCcccHHHHHHHHHHhCCCCCCc-EEEeeeccHHH
Q 022947          128 --PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN------PVNSTVPIAAEVFKKVGTYDPKR-LLGVTMLDVVR  198 (289)
Q Consensus       128 --~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN------Pvd~~t~~~~~~~~~~~~~~~~k-viG~t~lds~R  198 (289)
                        ......+++..|......+++.+++....-+|...|-      +...+.    |-........|.. .+|.+.....+
T Consensus        64 ~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~----E~~~~~~~~~p~~~~Y~~sK~~~e~  139 (306)
T PLN02725         64 HANMTYPADFIRENLQIQTNVIDAAYRHGVKKLLFLGSSCIYPKFAPQPIP----ETALLTGPPEPTNEWYAIAKIAGIK  139 (306)
T ss_pred             chhhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEEeCceeecCCCCCCCCC----HHHhccCCCCCCcchHHHHHHHHHH
Confidence              1123456778899999999999998764433333221      111111    1000000111211 24444333333


Q ss_pred             HHHHHHHHcCCCCccee-eeEEccc
Q 022947          199 ANTFVAEVLGLDPREVD-VPVVGGH  222 (289)
Q Consensus       199 ~~~~lA~~l~v~~~~V~-~~V~G~h  222 (289)
                      +.....+..+++...++ ..|+|.+
T Consensus       140 ~~~~~~~~~~~~~~~~R~~~vyG~~  164 (306)
T PLN02725        140 MCQAYRIQYGWDAISGMPTNLYGPH  164 (306)
T ss_pred             HHHHHHHHhCCCEEEEEecceeCCC
Confidence            33444566677777776 4588875

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=97.68  E-value=0.00071  Score=65.62  Aligned_cols=129  Identities=21%  Similarity=0.186  Sum_probs=75.4

Q ss_pred             hcCCCccccccccccccccccccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCc
Q 022947           18 HLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNA   97 (289)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~   97 (289)
                      |.+|.+-..-|-..++.+..-+... .++++|.|+||+|.+|..++..|+..|.  +|+++|+++... ...+.......
T Consensus       151 ~~~~~~~~~~~~~~~~d~~~~ta~s-l~gK~VLITGASgGIG~aLA~~La~~G~--~Vi~l~r~~~~l-~~~~~~~~~~v  226 (406)
T PRK07424        151 HFDNQNAYYCGTFTLVDKLMGTALS-LKGKTVAVTGASGTLGQALLKELHQQGA--KVVALTSNSDKI-TLEINGEDLPV  226 (406)
T ss_pred             EeccccceeeeeEEEeehhcCcccC-CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHH-HHHHhhcCCCe
Confidence            6667766666666666555433331 2356899999999999999999999997  899998865211 11111111011


Q ss_pred             e-EE-EEecCCCHHhhhCCCCEEEEcCCCCCCCCCch---hhHHHhhHHHHHHHHHHH
Q 022947           98 V-VR-GFLGQQQLEDALTGMDIVIIPAGVPRKPGMTR---DDLFNINAGIVKTLCEGI  150 (289)
Q Consensus        98 ~-v~-~~~~t~d~~eal~~aDiVIitag~~~~~g~~r---~d~~~~N~~i~~~i~~~i  150 (289)
                      . +. .....++..+.+.+.|++|+.+|.......+.   .+.+..|......+++.+
T Consensus       227 ~~v~~Dvsd~~~v~~~l~~IDiLInnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~  284 (406)
T PRK07424        227 KTLHWQVGQEAALAELLEKVDILIINHGINVHGERTPEAINKSYEVNTFSAWRLMELF  284 (406)
T ss_pred             EEEEeeCCCHHHHHHHhCCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            1 11 11111234455789999999998653322222   335566765444444443

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=97.68  E-value=0.00035  Score=64.01  Aligned_cols=109  Identities=13%  Similarity=0.119  Sum_probs=66.3

Q ss_pred             EEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhh----hCCCCEEEEcCCC
Q 022947           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDA----LTGMDIVIIPAGV  124 (289)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~ea----l~~aDiVIitag~  124 (289)
                      |.|+||+|++|++++..|...|. .+|+++|.........++........+.   ..+.++..    +.+.|+||++|+.
T Consensus         1 ilItGatG~iG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~~~~~~~~D~vvh~A~~   76 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGI-TDILVVDNLRDGHKFLNLADLVIADYID---KEDFLDRLEKGAFGKIEAIFHQGAC   76 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHcCC-ceEEEEecCCCchhhhhhhheeeeccCc---chhHHHHHHhhccCCCCEEEECccc
Confidence            57999999999999999998884 2788888654211111111100000111   01112222    2489999999986


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      ......+....+..|+.....+++.+.+...  .++++|
T Consensus        77 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~S  113 (314)
T TIGR02197        77 SDTTETDGEYMMENNYQYSKRLLDWCAEKGI--PFIYAS  113 (314)
T ss_pred             cCccccchHHHHHHHHHHHHHHHHHHHHhCC--cEEEEc
Confidence            4322223445677899999999999887653  344444

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=97.67  E-value=9.6e-05  Score=64.61  Aligned_cols=168  Identities=15%  Similarity=0.125  Sum_probs=94.4

Q ss_pred             EEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcccCCceEEEEecCCCHHhhhCCC--CEEEEcCCCC
Q 022947           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALTGM--DIVIIPAGVP  125 (289)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~a--DiVIitag~~  125 (289)
                      |.|+||+|++|+.++..|+.+|.  +++.+..... ........... .... ......++.+.+++.  |.||++|+..
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~-~~~~-dl~~~~~~~~~~~~~~~d~vi~~a~~~   76 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGH--EVIVLSRSSNSESFEEKKLNVE-FVIG-DLTDKEQLEKLLEKANIDVVIHLAAFS   76 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTT--EEEEEESCSTGGHHHHHHTTEE-EEES-ETTSHHHHHHHHHHHTESEEEEEBSSS
T ss_pred             EEEEccCCHHHHHHHHHHHHcCC--ccccccccccccccccccceEE-EEEe-eccccccccccccccCceEEEEeeccc
Confidence            78999999999999999999998  6665555442 21111100000 0000 011122455667777  9999999865


Q ss_pred             CC--CCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHH
Q 022947          126 RK--PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFV  203 (289)
Q Consensus       126 ~~--~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t~lds~R~~~~l  203 (289)
                      ..  ....-.+.+..|+...+.+.+.+.+... ..+++++. ..+--..-...+.+.+.+.+...+|.+.....++...+
T Consensus        77 ~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~~i~~sS-~~~y~~~~~~~~~e~~~~~~~~~Y~~~K~~~e~~~~~~  154 (236)
T PF01370_consen   77 SNPESFEDPEEIIEANVQGTRNLLEAAREAGV-KRFIFLSS-ASVYGDPDGEPIDEDSPINPLSPYGASKRAAEELLRDY  154 (236)
T ss_dssp             SHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEE-GGGGTSSSSSSBETTSGCCHSSHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccc-cccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            31  1123456788899999999999999876 34444443 21100000000000000111122344444445555556


Q ss_pred             HHHcCCCCccee-eeEEccc
Q 022947          204 AEVLGLDPREVD-VPVVGGH  222 (289)
Q Consensus       204 A~~l~v~~~~V~-~~V~G~h  222 (289)
                      .++.+++...++ ..|+|.+
T Consensus       155 ~~~~~~~~~~~R~~~vyG~~  174 (236)
T PF01370_consen  155 AKKYGLRVTILRPPNVYGPG  174 (236)
T ss_dssp             HHHHTSEEEEEEESEEESTT
T ss_pred             cccccccccccccccccccc
Confidence            667788888888 5588887

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=97.65  E-value=0.00038  Score=61.94  Aligned_cols=114  Identities=18%  Similarity=0.248  Sum_probs=66.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal-------  112 (289)
                      .+++.|+|++|.+|++++..|++.|.  +|+++++++.  .....++.+..  .++..+. +-+|   +++++       
T Consensus         7 ~~~vlItGasg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   82 (262)
T PRK13394          7 GKTAVVTGAASGIGKEIALELARAGA--AVAIADLNQDGANAVADEINKAG--GKAIGVAMDVTNEDAVNAGIDKVAERF   82 (262)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhcC--ceEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999998  8999998772  22222333221  1222111 1112   22222       


Q ss_pred             CCCCEEEEcCCCCCCC---C---CchhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEec
Q 022947          113 TGMDIVIIPAGVPRKP---G---MTRDDLFNINAGI----VKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       113 ~~aDiVIitag~~~~~---g---~~r~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~t  163 (289)
                      ...|+||+++|.....   .   +.-.+.+..|+..    .+.+.+.+.+..+.+.++++|
T Consensus        83 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~s  143 (262)
T PRK13394         83 GSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMG  143 (262)
T ss_pred             CCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEc
Confidence            3589999999864211   1   1122344566665    666666663334445555554

>PRK06482 short chain dehydrogenase; Provisional

Probab=97.65  E-value=0.00091  Score=60.40  Aligned_cols=113  Identities=11%  Similarity=0.011  Sum_probs=64.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEe-cCCC---HHhh-------hCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------LTGM  115 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------l~~a  115 (289)
                      ++|.|+||+|++|+.++..|+..|.  .|+++++++..  ..++.... ...+..+. +-+|   +.+.       +...
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~--~v~~~~r~~~~--~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   77 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGD--RVAATVRRPDA--LDDLKARY-GDRLWVLQLDVTDSAAVRAVVDRAFAALGRI   77 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHhc-cCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4799999999999999999999987  88898876511  11111110 01121111 1112   1122       3457


Q ss_pred             CEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 022947          116 DIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (289)
Q Consensus       116 DiVIitag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tN  164 (289)
                      |+||+++|......   .+   -...+..|+.....+.+.+.++   ...+.++++|.
T Consensus        78 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS  135 (276)
T PRK06482         78 DVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSS  135 (276)
T ss_pred             CEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcC
Confidence            99999998753221   11   1235567877777777665322   22344555543

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=97.64  E-value=0.0023  Score=57.10  Aligned_cols=118  Identities=13%  Similarity=0.168  Sum_probs=67.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhh-------hC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------LT  113 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------l~  113 (289)
                      ++|.|+|++|.+|.+++..|++.|.  +|+++|++..  .....++........+..+. +.++   ...+       +.
T Consensus         3 k~ilItG~~~~IG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~   80 (259)
T PRK12384          3 QVAVVIGGGQTLGAFLCHGLAEEGY--RVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG   80 (259)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999999997  8999998752  11112222211001222111 1112   2112       24


Q ss_pred             CCCEEEEcCCCCCCC---CCch---hhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecCCC
Q 022947          114 GMDIVIIPAGVPRKP---GMTR---DDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPV  166 (289)
Q Consensus       114 ~aDiVIitag~~~~~---g~~r---~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~tNPv  166 (289)
                      ..|+||+++|.+...   ..+.   ...+..|+..    .+.+.+.+.+..+++.++++|...
T Consensus        81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~  143 (259)
T PRK12384         81 RVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKS  143 (259)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcc
Confidence            679999999865322   1122   2234455543    455556555554456677666543

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=97.64  E-value=0.0004  Score=71.17  Aligned_cols=90  Identities=19%  Similarity=0.193  Sum_probs=61.1

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhh--CCCCEEEEc
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL--TGMDIVIIP  121 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal--~~aDiVIit  121 (289)
                      ...|||.|+||+|++|++++..|...|+  ++... .       .|+.+..            .+...+  .+.|+||++
T Consensus       378 ~~~mkiLVtGa~G~iG~~l~~~L~~~g~--~v~~~-~-------~~l~d~~------------~v~~~i~~~~pd~Vih~  435 (668)
T PLN02260        378 KPSLKFLIYGRTGWIGGLLGKLCEKQGI--AYEYG-K-------GRLEDRS------------SLLADIRNVKPTHVFNA  435 (668)
T ss_pred             CCCceEEEECCCchHHHHHHHHHHhCCC--eEEee-c-------cccccHH------------HHHHHHHhhCCCEEEEC
Confidence            4568999999999999999999988886  55211 1       1111110            111222  268999999


Q ss_pred             CCCCCCC--C---CchhhHHHhhHHHHHHHHHHHHHhCC
Q 022947          122 AGVPRKP--G---MTRDDLFNINAGIVKTLCEGIAKCCP  155 (289)
Q Consensus       122 ag~~~~~--g---~~r~d~~~~N~~i~~~i~~~i~~~~p  155 (289)
                      |+....+  +   ....+.+..|+.....+++.+++...
T Consensus       436 Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~  474 (668)
T PLN02260        436 AGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGL  474 (668)
T ss_pred             CcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCC
Confidence            9864322  1   13456678899999999999998764

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.64  E-value=0.00041  Score=62.94  Aligned_cols=96  Identities=14%  Similarity=0.175  Sum_probs=61.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCC-ccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~-~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      +|||+|||+ |.+|..++..|...+. ..+|.++|+++..  ...+....   .+..   +.+..+.+.++|+||++.. 
T Consensus         2 mm~I~iIG~-G~mG~~la~~l~~~g~~~~~v~v~~r~~~~--~~~~~~~~---g~~~---~~~~~~~~~~advVil~v~-   71 (267)
T PRK11880          2 MKKIGFIGG-GNMASAIIGGLLASGVPAKDIIVSDPSPEK--RAALAEEY---GVRA---ATDNQEAAQEADVVVLAVK-   71 (267)
T ss_pred             CCEEEEEec-hHHHHHHHHHHHhCCCCcceEEEEcCCHHH--HHHHHHhc---CCee---cCChHHHHhcCCEEEEEcC-
Confidence            679999998 9999999998888772 1378999987521  11122110   1111   2345677899999999851 


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd  167 (289)
                                     ...++++++.+..+. +..|+.++|-+.
T Consensus        72 ---------------~~~~~~v~~~l~~~~-~~~vvs~~~gi~   98 (267)
T PRK11880         72 ---------------PQVMEEVLSELKGQL-DKLVVSIAAGVT   98 (267)
T ss_pred             ---------------HHHHHHHHHHHHhhc-CCEEEEecCCCC
Confidence                           123455555555544 456777777664

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=97.63  E-value=0.00044  Score=64.23  Aligned_cols=69  Identities=23%  Similarity=0.217  Sum_probs=48.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      .+||+|||+ |.+|..++..|...|+..+|.++|+++. ...+.+.   .  .....   ..+++++++++|+||++..
T Consensus         6 ~~~I~IIG~-G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~---g--~~~~~---~~~~~~~~~~aDvViiavp   75 (307)
T PRK07502          6 FDRVALIGI-GLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL---G--LGDRV---TTSAAEAVKGADLVILCVP   75 (307)
T ss_pred             CcEEEEEee-CHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC---C--CCcee---cCCHHHHhcCCCEEEECCC
Confidence            368999998 9999999999988886558999998762 1111111   1  01111   2345678899999999964

>PRK08267 short chain dehydrogenase; Provisional

Probab=97.62  E-value=0.00043  Score=61.89  Aligned_cols=115  Identities=23%  Similarity=0.280  Sum_probs=64.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchh--HHhhhhcccCCceEE--EEecCCCHHhhh--------CC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVR--GFLGQQQLEDAL--------TG  114 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g--~~~DL~~~~~~~~v~--~~~~t~d~~eal--------~~  114 (289)
                      +++.|+||+|.+|..++..|+..|.  +|+++|++....  ...++...  .....  .+....+..+.+        ..
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~~~~   77 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGW--RVGAYDINEAGLAALAAELGAG--NAWTGALDVTDRAAWDAALADFAAATGGR   77 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCC--ceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            4799999999999999999999997  899999876211  11111110  00111  011111222222        35


Q ss_pred             CCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHH---hCCCcEEEEecCC
Q 022947          115 MDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAK---CCPKAIVNLISNP  165 (289)
Q Consensus       115 aDiVIitag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~---~~p~aiviv~tNP  165 (289)
                      .|+||+++|......   .+   -.+.+..|+.....+.+.+.+   ..+.+.+++++..
T Consensus        78 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~  137 (260)
T PRK08267         78 LDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSA  137 (260)
T ss_pred             CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCch
Confidence            699999998753221   11   233566677655555554432   2344556665543

>PRK06180 short chain dehydrogenase; Provisional

Probab=97.62  E-value=0.0014  Score=59.35  Aligned_cols=114  Identities=12%  Similarity=0.097  Sum_probs=65.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEe-cCCC---HHhhh-------CC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------TG  114 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal-------~~  114 (289)
                      +++|.|+||+|.+|++++..|+..|.  +|++++++....  .++.... ..++..+. +-+|   ..+.+       ..
T Consensus         4 ~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~--~~l~~~~-~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~   78 (277)
T PRK06180          4 MKTWLITGVSSGFGRALAQAALAAGH--RVVGTVRSEAAR--ADFEALH-PDRALARLLDVTDFDAIDAVVADAEATFGP   78 (277)
T ss_pred             CCEEEEecCCChHHHHHHHHHHhCcC--EEEEEeCCHHHH--HHHHhhc-CCCeeEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            45799999999999999999999997  899999875211  1121111 01111110 1111   22222       36


Q ss_pred             CCEEEEcCCCCCC-C--CCch---hhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 022947          115 MDIVIIPAGVPRK-P--GMTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (289)
Q Consensus       115 aDiVIitag~~~~-~--g~~r---~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tN  164 (289)
                      .|+||+++|.... +  ..+.   .+.+..|+.....+.+.+..+   ...+.++++|.
T Consensus        79 ~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS  137 (277)
T PRK06180         79 IDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITS  137 (277)
T ss_pred             CCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEec
Confidence            8999999986421 1  1122   234667777666666654332   22345665554

>PRK05865 hypothetical protein; Provisional

Probab=97.62  E-value=0.00042  Score=72.76  Aligned_cols=104  Identities=18%  Similarity=0.156  Sum_probs=70.8

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEE-EEecCCCHHhhhCCCCEEEEcCCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~-~~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      |||.|+||+|++|++++..|+..|+  +|+++|.+....    +.. . ...+. .+....++.++++++|+||++|+..
T Consensus         1 MkILVTGATGfIGs~La~~Ll~~G~--~Vv~l~R~~~~~----~~~-~-v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~   72 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLSQGH--EVVGIARHRPDS----WPS-S-ADFIAADIRDATAVESAMTGADVVAHCAWVR   72 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCchhh----ccc-C-ceEEEeeCCCHHHHHHHHhCCCEEEECCCcc
Confidence            5899999999999999999999998  999999764210    000 0 00111 1111234566789999999998753


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 022947          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV  166 (289)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPv  166 (289)
                      ..       ....|+.....+++.+++.+.. .++++|.+.
T Consensus        73 ~~-------~~~vNv~GT~nLLeAa~~~gvk-r~V~iSS~~  105 (854)
T PRK05865         73 GR-------NDHINIDGTANVLKAMAETGTG-RIVFTSSGH  105 (854)
T ss_pred             cc-------hHHHHHHHHHHHHHHHHHcCCC-eEEEECCcH
Confidence            21       3467888889999988877543 455666654

>PRK12320 hypothetical protein; Provisional

Probab=97.62  E-value=0.00033  Score=72.12  Aligned_cols=100  Identities=13%  Similarity=0.073  Sum_probs=65.8

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEE-EecCCCHHhhhCCCCEEEEcCCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      |||.|+||+|++|++++..|+..|+  +|+.+|..+..     ..+.. ...+.. +.. ..+.+++.++|+||++++..
T Consensus         1 MkILVTGAaGFIGs~La~~Ll~~G~--~Vi~ldr~~~~-----~~~~~-ve~v~~Dl~d-~~l~~al~~~D~VIHLAa~~   71 (699)
T PRK12320          1 MQILVTDATGAVGRSVTRQLIAAGH--TVSGIAQHPHD-----ALDPR-VDYVCASLRN-PVLQELAGEADAVIHLAPVD   71 (699)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCChhh-----cccCC-ceEEEccCCC-HHHHHHhcCCCEEEEcCccC
Confidence            5899999999999999999999998  99999975421     01100 001110 111 12456678999999998753


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      .  ..    ....|+....++++.+++.+.  .++++|
T Consensus        72 ~--~~----~~~vNv~Gt~nLleAA~~~Gv--RiV~~S  101 (699)
T PRK12320         72 T--SA----PGGVGITGLAHVANAAARAGA--RLLFVS  101 (699)
T ss_pred             c--cc----hhhHHHHHHHHHHHHHHHcCC--eEEEEE
Confidence            1  11    123688888889998887654  444444

>PLN02688 pyrroline-5-carboxylate reductase

Probab=97.61  E-value=0.00035  Score=63.29  Aligned_cols=95  Identities=15%  Similarity=0.258  Sum_probs=60.8

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCC--ccEEEEE-eCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPL--VSVLHLY-DVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~--~~eI~Lv-D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      |||++||. |.+|..++..|+..++  ..+|+++ |+++..  ...+...    .+..   ..+..++++++|+||++. 
T Consensus         1 ~kI~~IG~-G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~--~~~~~~~----g~~~---~~~~~e~~~~aDvVil~v-   69 (266)
T PLN02688          1 FRVGFIGA-GKMAEAIARGLVASGVVPPSRISTADDSNPAR--RDVFQSL----GVKT---AASNTEVVKSSDVIILAV-   69 (266)
T ss_pred             CeEEEECC-cHHHHHHHHHHHHCCCCCcceEEEEeCCCHHH--HHHHHHc----CCEE---eCChHHHHhcCCEEEEEE-
Confidence            68999998 9999999999988875  4578888 765422  1222221    1121   234567789999999996 


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCc
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVN  167 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd  167 (289)
                      .|               ..++++.+.+..+. |+.+++..++...
T Consensus        70 ~~---------------~~~~~vl~~l~~~~~~~~~iIs~~~g~~   99 (266)
T PLN02688         70 KP---------------QVVKDVLTELRPLLSKDKLLVSVAAGIT   99 (266)
T ss_pred             Cc---------------HHHHHHHHHHHhhcCCCCEEEEecCCCc
Confidence            12               22444545555543 6666666555553

>PRK12829 short chain dehydrogenase; Provisional

Probab=97.61  E-value=0.0016  Score=58.02  Aligned_cols=36  Identities=33%  Similarity=0.522  Sum_probs=32.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      +.+++.|+||+|.+|+.++..|+.+|.  +|+++++++
T Consensus        10 ~~~~vlItGa~g~iG~~~a~~L~~~g~--~V~~~~r~~   45 (264)
T PRK12829         10 DGLRVLVTGGASGIGRAIAEAFAEAGA--RVHVCDVSE   45 (264)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            346999999999999999999999998  899999875

>PRK07680 late competence protein ComER; Validated

Probab=97.61  E-value=0.00048  Score=62.94  Aligned_cols=97  Identities=15%  Similarity=0.229  Sum_probs=63.8

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCc--cEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~--~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      |||+|||+ |.+|..++..|...+..  .+|.++|++...  ...+.+.  ...+..   +.+..+.++++|+||++.- 
T Consensus         1 m~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~--~~~~~~~--~~g~~~---~~~~~~~~~~aDiVilav~-   71 (273)
T PRK07680          1 MNIGFIGT-GNMGTILIEAFLESGAVKPSQLTITNRTPAK--AYHIKER--YPGIHV---AKTIEEVISQSDLIFICVK-   71 (273)
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCHHH--HHHHHHH--cCCeEE---ECCHHHHHHhCCEEEEecC-
Confidence            58999998 99999999998887732  478999987521  1222221  112222   2345677899999999851 


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCc
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVN  167 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd  167 (289)
                                     -..+.++++.+..+- ++.+|+-++|++.
T Consensus        72 ---------------p~~~~~vl~~l~~~l~~~~~iis~~ag~~  100 (273)
T PRK07680         72 ---------------PLDIYPLLQKLAPHLTDEHCLVSITSPIS  100 (273)
T ss_pred             ---------------HHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence                           122445555665543 6778888898874

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=97.61  E-value=0.00014  Score=59.36  Aligned_cols=102  Identities=20%  Similarity=0.240  Sum_probs=57.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      ..+||+|||+ |.||.+++..|...|+  +|.-+-... .....++....  .....    .++.+.++++|++|++.. 
T Consensus         9 ~~l~I~iIGa-GrVG~~La~aL~~ag~--~v~~v~srs-~~sa~~a~~~~--~~~~~----~~~~~~~~~aDlv~iavp-   77 (127)
T PF10727_consen    9 ARLKIGIIGA-GRVGTALARALARAGH--EVVGVYSRS-PASAERAAAFI--GAGAI----LDLEEILRDADLVFIAVP-   77 (127)
T ss_dssp             ---EEEEECT-SCCCCHHHHHHHHTTS--EEEEESSCH-H-HHHHHHC----TT---------TTGGGCC-SEEEE-S--
T ss_pred             CccEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCC-ccccccccccc--ccccc----cccccccccCCEEEEEec-
Confidence            3579999998 9999999999999997  776664322 11112222211  11111    134577899999999952 


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHh--C-CCcEEEEe--cCCCcccHHH
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKC--C-PKAIVNLI--SNPVNSTVPI  172 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~--~-p~aiviv~--tNPvd~~t~~  172 (289)
                          +           ..+.+++++|..+  . |..+|+=.  +-+++++.++
T Consensus        78 ----D-----------daI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~  115 (127)
T PF10727_consen   78 ----D-----------DAIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPA  115 (127)
T ss_dssp             ----C-----------CHHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHH
T ss_pred             ----h-----------HHHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhH
Confidence                1           2367788888876  2 55454443  3456677654

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK05717 oxidoreductase; Validated

Probab=97.60  E-value=0.00084  Score=59.89  Aligned_cols=144  Identities=14%  Similarity=0.138  Sum_probs=80.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhH--HhhhhcccCCceEEEEe-cCCC---HHhh-------h
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVRGFL-GQQQ---LEDA-------L  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~--~~DL~~~~~~~~v~~~~-~t~d---~~ea-------l  112 (289)
                      .++|.|+|++|.+|++++..|+..|.  +|+++|+++....  ..++.     ..+..+. +..+   ..++       +
T Consensus        10 ~k~vlItG~sg~IG~~~a~~l~~~g~--~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~~~   82 (255)
T PRK05717         10 GRVALVTGAARGIGLGIAAWLIAEGW--QVVLADLDRERGSKVAKALG-----ENAWFIAMDVADEAQVAAGVAEVLGQF   82 (255)
T ss_pred             CCEEEEeCCcchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHcC-----CceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            35799999999999999999999987  8999998652211  11111     1111110 1111   1111       2


Q ss_pred             CCCCEEEEcCCCCCCCC-----Cc---hhhHHHhhHHHHHHHHHHHHHh--CCCcEEEEecCCCcccHHHHHHHHHHhCC
Q 022947          113 TGMDIVIIPAGVPRKPG-----MT---RDDLFNINAGIVKTLCEGIAKC--CPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g-----~~---r~d~~~~N~~i~~~i~~~i~~~--~p~aiviv~tNPvd~~t~~~~~~~~~~~~  182 (289)
                      ...|++|+++|......     .+   -.+.+..|+.....+.+.+.++  ...+.++++|.....            .+
T Consensus        83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~------------~~  150 (255)
T PRK05717         83 GRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRAR------------QS  150 (255)
T ss_pred             CCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhc------------CC
Confidence            35799999998653211     11   1245667777666666666543  234566666543221            12


Q ss_pred             CCCCcEEEeeeccHHHHHHHHHHHcC
Q 022947          183 YDPKRLLGVTMLDVVRANTFVAEVLG  208 (289)
Q Consensus       183 ~~~~kviG~t~lds~R~~~~lA~~l~  208 (289)
                      .+..-.+|.+..-...+-+.++++++
T Consensus       151 ~~~~~~Y~~sKaa~~~~~~~la~~~~  176 (255)
T PRK05717        151 EPDTEAYAASKGGLLALTHALAISLG  176 (255)
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHhc
Confidence            22223445543323345667777765

>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=97.59  E-value=0.00045  Score=65.76  Aligned_cols=110  Identities=22%  Similarity=0.248  Sum_probs=73.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcccCCceEEEE----ecCCCHHhhhCCCCEEE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGF----LGQQQLEDALTGMDIVI  119 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~~~~~~v~~~----~~t~d~~eal~~aDiVI  119 (289)
                      ++.++.|+||+||+|.++...|.+++...||.++|.... ...-.|.... ....++..    ....+...++.++ .|+
T Consensus         3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~-~~~~v~~~~~D~~~~~~i~~a~~~~-~Vv   80 (361)
T KOG1430|consen    3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGF-RSGRVTVILGDLLDANSISNAFQGA-VVV   80 (361)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcc-cCCceeEEecchhhhhhhhhhccCc-eEE
Confidence            456899999999999999999999886669999998762 1111111110 11222221    1223567889999 677


Q ss_pred             EcCCCCC-CCCC-chhhHHHhhHHHHHHHHHHHHHhCCC
Q 022947          120 IPAGVPR-KPGM-TRDDLFNINAGIVKTLCEGIAKCCPK  156 (289)
Q Consensus       120 itag~~~-~~g~-~r~d~~~~N~~i~~~i~~~i~~~~p~  156 (289)
                      +++..+. .-.. .|......|+...+.+.+.+.+.+-+
T Consensus        81 h~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~  119 (361)
T KOG1430|consen   81 HCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVK  119 (361)
T ss_pred             EeccccCccccccchhhheeecchhHHHHHHHHHHhCCC
Confidence            7654321 2223 36667788999999999999988644

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=97.58  E-value=0.0006  Score=61.09  Aligned_cols=111  Identities=16%  Similarity=0.122  Sum_probs=64.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEE----ec-CCCHHhhh-CCCCEE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGF----LG-QQQLEDAL-TGMDIV  118 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~----~~-t~d~~eal-~~aDiV  118 (289)
                      .++||.|+||+|++|..++..|+..|+  +|+++.++....... +..   ...+..+    .. ..++.+.+ .++|+|
T Consensus        16 ~~~~ilItGasG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~-~~~---~~~~~~~~~Dl~d~~~~l~~~~~~~~d~v   89 (251)
T PLN00141         16 KTKTVFVAGATGRTGKRIVEQLLAKGF--AVKAGVRDVDKAKTS-LPQ---DPSLQIVRADVTEGSDKLVEAIGDDSDAV   89 (251)
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHhCCC--EEEEEecCHHHHHHh-ccc---CCceEEEEeeCCCCHHHHHHHhhcCCCEE
Confidence            357999999999999999999998887  888776654211111 111   0111111    11 12344566 689999


Q ss_pred             EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       119 Iitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      |+++|.....+.  .+....|......+++.+++....-+|++.|
T Consensus        90 i~~~g~~~~~~~--~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS  132 (251)
T PLN00141         90 ICATGFRRSFDP--FAPWKVDNFGTVNLVEACRKAGVTRFILVSS  132 (251)
T ss_pred             EECCCCCcCCCC--CCceeeehHHHHHHHHHHHHcCCCEEEEEcc
Confidence            998876422111  1112345555677777777655443444333

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=97.57  E-value=0.0017  Score=57.89  Aligned_cols=116  Identities=16%  Similarity=0.195  Sum_probs=67.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEE----ecCCCHHhh-------h
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGF----LGQQQLEDA-------L  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~----~~t~d~~ea-------l  112 (289)
                      .++|.|+|++|.+|..++..|+..|.  +|+++|+++.  .....++...  ..++..+    ....++++.       +
T Consensus        10 ~k~vlItGa~g~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   85 (255)
T PRK07523         10 GRRALVTGSSQGIGYALAEGLAQAGA--EVILNGRDPAKLAAAAESLKGQ--GLSAHALAFDVTDHDAVRAAIDAFEAEI   85 (255)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhc--CceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            45899999999999999999999997  8999998762  1112222221  1112211    111122222       2


Q ss_pred             CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHhC---CCcEEEEecCC
Q 022947          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCC---PKAIVNLISNP  165 (289)
Q Consensus       113 ~~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~~---p~aiviv~tNP  165 (289)
                      ...|+||+++|.....   ..+   -.+.+..|+.....+.+.+.++.   ..+.++++|..
T Consensus        86 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~  147 (255)
T PRK07523         86 GPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASV  147 (255)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccc
Confidence            4579999999864321   111   13345677665555555555432   34566666654

>PRK09135 pteridine reductase; Provisional

Probab=97.56  E-value=0.0015  Score=57.39  Aligned_cols=147  Identities=14%  Similarity=0.114  Sum_probs=78.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC---chhHHhhhhcccCCceEEEEe-cCCC---HHhhh-------
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~---~~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal-------  112 (289)
                      ++|.|+||+|++|++++..|+..|.  +|+++++..   ......++.+.. ...+..+. +-+|   ..+++       
T Consensus         7 ~~vlItGa~g~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   83 (249)
T PRK09135          7 KVALITGGARRIGAAIARTLHAAGY--RVAIHYHRSAAEADALAAELNALR-PGSAAALQADLLDPDALPELVAACVAAF   83 (249)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhhc-CCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            5899999999999999999999997  899999754   111122232211 01111111 1112   22223       


Q ss_pred             CCCCEEEEcCCCCCC--CC-Cc---hhhHHHhhHHHHHHHHHHHHHhC--CCcEEEEecCCCcccHHHHHHHHHHhCCCC
Q 022947          113 TGMDIVIIPAGVPRK--PG-MT---RDDLFNINAGIVKTLCEGIAKCC--PKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (289)
Q Consensus       113 ~~aDiVIitag~~~~--~g-~~---r~d~~~~N~~i~~~i~~~i~~~~--p~aiviv~tNPvd~~t~~~~~~~~~~~~~~  184 (289)
                      ...|+||+++|....  .. .+   ..+.+..|+.....+.+.+.++-  ..+.++..+. .   .        ....++
T Consensus        84 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~-~---~--------~~~~~~  151 (249)
T PRK09135         84 GRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITD-I---H--------AERPLK  151 (249)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeC-h---h--------hcCCCC
Confidence            357999999985321  11 11   23456677776666666654432  1344443332 1   0        012344


Q ss_pred             CCcEEEeeeccHHHHHHHHHHHcC
Q 022947          185 PKRLLGVTMLDVVRANTFVAEVLG  208 (289)
Q Consensus       185 ~~kviG~t~lds~R~~~~lA~~l~  208 (289)
                      +...++.+......+-..++++++
T Consensus       152 ~~~~Y~~sK~~~~~~~~~l~~~~~  175 (249)
T PRK09135        152 GYPVYCAAKAALEMLTRSLALELA  175 (249)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHC
Confidence            444555554434444555666653

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=97.56  E-value=0.00064  Score=62.17  Aligned_cols=107  Identities=18%  Similarity=0.120  Sum_probs=66.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hh-HHhhhhcccCCceEEEEe----cCCCHHhhhC--CCCEEE
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PG-VTADISHMDTNAVVRGFL----GQQQLEDALT--GMDIVI  119 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g-~~~DL~~~~~~~~v~~~~----~t~d~~eal~--~aDiVI  119 (289)
                      ||.|+||+|++|..++..|...+.  +|+++|.... .. ...++...   ..+..+.    ...+++++++  +.|+||
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~g~--~V~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~d~vv   75 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLESGH--EVVVLDNLSNGSPEALKRGERI---TRVTFVEGDLRDRELLDRLFEEHKIDAVI   75 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhCCC--eEEEEeCCCccchhhhhhhccc---cceEEEECCCCCHHHHHHHHHhCCCcEEE
Confidence            689999999999999999999887  8888886431 11 11111110   0122111    1123334443  699999


Q ss_pred             EcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEE
Q 022947          120 IPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIV  159 (289)
Q Consensus       120 itag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiv  159 (289)
                      .++|.....  .....+.+..|+.....+++.+.+.....++
T Consensus        76 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v  117 (328)
T TIGR01179        76 HFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFI  117 (328)
T ss_pred             ECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEE
Confidence            999864322  1223445678999999999888876544444

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.55  E-value=0.00065  Score=63.65  Aligned_cols=110  Identities=16%  Similarity=0.181  Sum_probs=71.4

Q ss_pred             cHHHHHHHHHhCCCccEEEEEeCCCch----------hH--Hhhhhc----cc---------CCceEEEEecCCCHHhhh
Q 022947           58 IGQPLAMLMKINPLVSVLHLYDVVNTP----------GV--TADISH----MD---------TNAVVRGFLGQQQLEDAL  112 (289)
Q Consensus        58 VGs~la~~L~~~g~~~eI~LvD~~~~~----------g~--~~DL~~----~~---------~~~~v~~~~~t~d~~eal  112 (289)
                      +|+.+|..++..|+  +|+|+|+++..          +.  +.+..+    ..         ...+++... +.++++++
T Consensus         1 MG~giA~~~a~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~~a~   77 (314)
T PRK08269          1 MGQGIALAFAFAGH--DVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVA-RDGAADAL   77 (314)
T ss_pred             CcHHHHHHHHhCCC--eEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeec-CcchHHHh
Confidence            57889999999998  99999998721          11  111100    00         012444321 22466889


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022947          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~  191 (289)
                      ++||+||.++              .+|.++.+++...+.+.+ |++++  .||.+.....   ++ ..... .|+|++|+
T Consensus        78 ~~aD~ViEav--------------~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~---~l-a~~~~-~p~r~~g~  136 (314)
T PRK08269         78 ADADLVFEAV--------------PEVLDAKREALRWLGRHVDADAII--ASTTSTFLVT---DL-QRHVA-HPERFLNA  136 (314)
T ss_pred             ccCCEEEECC--------------cCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHH---HH-HhhcC-CcccEEEE
Confidence            9999999984              357888899999999987 66666  7888775442   22 22333 46788887

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.55  E-value=0.0033  Score=55.45  Aligned_cols=35  Identities=26%  Similarity=0.284  Sum_probs=32.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .++|.|+||+|.+|..++..|++.|.  +|+++++++
T Consensus         5 ~~~vlItGasg~iG~~l~~~l~~~G~--~V~~~~r~~   39 (251)
T PRK07231          5 GKVAIVTGASSGIGEGIARRFAAEGA--RVVVTDRNE   39 (251)
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            45899999999999999999999997  899999876

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=97.55  E-value=0.00061  Score=58.89  Aligned_cols=102  Identities=19%  Similarity=0.242  Sum_probs=64.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHH---hhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT---ADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~---~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      |||+||||+|.+|+.++..++.+|+  ||+.+=+++.+-.+   .-+.+.+    +  + ..+.+.+++.+-|+||-+.|
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGH--eVTAivRn~~K~~~~~~~~i~q~D----i--f-d~~~~a~~l~g~DaVIsA~~   71 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGH--EVTAIVRNASKLAARQGVTILQKD----I--F-DLTSLASDLAGHDAVISAFG   71 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCC--eeEEEEeChHhccccccceeeccc----c--c-ChhhhHhhhcCCceEEEecc
Confidence            7999999999999999999999999  99999877621111   1011111    1  1 12234578999999999977


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      .+. ++.  .   ..-.+....+...++... ...++++.-
T Consensus        72 ~~~-~~~--~---~~~~k~~~~li~~l~~ag-v~RllVVGG  105 (211)
T COG2910          72 AGA-SDN--D---ELHSKSIEALIEALKGAG-VPRLLVVGG  105 (211)
T ss_pred             CCC-CCh--h---HHHHHHHHHHHHHHhhcC-CeeEEEEcC
Confidence            553 221  1   112333555556665543 445666653

>PRK06182 short chain dehydrogenase; Validated

Probab=97.54  E-value=0.001  Score=60.11  Aligned_cols=114  Identities=14%  Similarity=0.121  Sum_probs=65.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhh-------CCCCEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL-------TGMDIV  118 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal-------~~aDiV  118 (289)
                      .++|.|+|++|.+|..++..|+..|.  +|++.++++..  ..++...............+++++.+       .+.|++
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~--l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~l   78 (273)
T PRK06182          3 KKVALVTGASSGIGKATARRLAAQGY--TVYGAARRVDK--MEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVL   78 (273)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            46899999999999999999999997  89999887521  11121111000000111112232333       378999


Q ss_pred             EEcCCCCCCC---CC---chhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 022947          119 IIPAGVPRKP---GM---TRDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       119 Iitag~~~~~---g~---~r~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      |+++|.....   ..   .....+..|...    ++.+.+.+++... +.+++++.
T Consensus        79 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~-g~iv~isS  133 (273)
T PRK06182         79 VNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRS-GRIINISS  133 (273)
T ss_pred             EECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCC-CEEEEEcc
Confidence            9999864221   11   123345556543    5666666665543 45555553

>PRK08655 prephenate dehydrogenase; Provisional

Probab=97.54  E-value=0.00069  Score=66.33  Aligned_cols=66  Identities=24%  Similarity=0.346  Sum_probs=47.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      |||+|||+.|.+|..++..|...|+  +|.++|+++...  .++....   .+..   ++++.+++.++|+||++.
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~--~V~v~~r~~~~~--~~~a~~~---gv~~---~~~~~e~~~~aDvVIlav   66 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGF--EVIVTGRDPKKG--KEVAKEL---GVEY---ANDNIDAAKDADIVIISV   66 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCC--EEEEEECChHHH--HHHHHHc---CCee---ccCHHHHhccCCEEEEec
Confidence            5899998559999999999999887  899999875221  1111110   1111   245668899999999985

>PRK07326 short chain dehydrogenase; Provisional

Probab=97.53  E-value=0.0012  Score=57.87  Aligned_cols=115  Identities=17%  Similarity=0.193  Sum_probs=64.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe----cCCCHHhhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL----GQQQLEDAL-------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~----~t~d~~eal-------  112 (289)
                      .++|.|+||+|.+|+.++..|+..|.  +|+++++++.  .....++...   ..+..+.    ...++.+.+       
T Consensus         6 ~~~ilItGatg~iG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (237)
T PRK07326          6 GKVALITGGSKGIGFAIAEALLAEGY--KVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAF   80 (237)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999998887  8999998762  1112223221   1122111    111222222       


Q ss_pred             CCCCEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHh--CCCcEEEEecCC
Q 022947          113 TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIAKC--CPKAIVNLISNP  165 (289)
Q Consensus       113 ~~aDiVIitag~~~~~---g~~r---~d~~~~N~~i~~~i~~~i~~~--~p~aiviv~tNP  165 (289)
                      ...|+||+++|.....   ..+.   .+.+..|+.....+.+.+.+.  ...+.++++|..
T Consensus        81 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~  141 (237)
T PRK07326         81 GGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSL  141 (237)
T ss_pred             CCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECCh
Confidence            3799999998864321   1111   133555655444444444332  234556666653

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=97.53  E-value=0.0015  Score=58.14  Aligned_cols=34  Identities=18%  Similarity=0.126  Sum_probs=31.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      |+|.|+||+|.+|..++..|+..|.  +|+++|+++
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~   34 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQ   34 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCH
Confidence            5899999999999999999999997  899999875

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=97.52  E-value=0.00053  Score=63.20  Aligned_cols=65  Identities=18%  Similarity=0.264  Sum_probs=47.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      ++||+|||. |.+|..++..++..|+  +|.++|+++...  ..+....    +.   ..+++++.+++||+||++.
T Consensus         2 ~~~IgviG~-G~mG~~~a~~l~~~g~--~v~~~d~~~~~~--~~~~~~g----~~---~~~~~~e~~~~~d~vi~~v   66 (296)
T PRK11559          2 TMKVGFIGL-GIMGKPMSKNLLKAGY--SLVVYDRNPEAV--AEVIAAG----AE---TASTAKAVAEQCDVIITML   66 (296)
T ss_pred             CceEEEEcc-CHHHHHHHHHHHHCCC--eEEEEcCCHHHH--HHHHHCC----Ce---ecCCHHHHHhcCCEEEEeC
Confidence            468999998 9999999999999887  899999876221  1111111    11   1245678889999999985

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=97.52  E-value=0.00075  Score=59.83  Aligned_cols=114  Identities=16%  Similarity=0.222  Sum_probs=65.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEE----ecCCCHHhhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGF----LGQQQLEDAL-------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~----~~t~d~~eal-------  112 (289)
                      .++|.|+|++|.+|.+++..|+..|.  +|++++++..  .....++...  ..++..+    ....++.+++       
T Consensus         4 ~~~vlItG~sg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   79 (258)
T PRK12429          4 GKVALVTGAASGIGLEIALALAKEGA--KVVIADLNDEAAAAAAEALQKA--GGKAIGVAMDVTDEEAINAGIDYAVETF   79 (258)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999997  9999998762  2222233221  1122211    1111222222       


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 022947          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      .+.|+||+++|......   .+   -.+.+..|+..    .+.+.+.+++... ..++++|.
T Consensus        80 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~iss  140 (258)
T PRK12429         80 GGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGG-GRIINMAS  140 (258)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCC-eEEEEEcc
Confidence            36899999998642211   11   12234445554    5666666655443 34554444

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=97.51  E-value=0.00076  Score=62.54  Aligned_cols=95  Identities=18%  Similarity=0.201  Sum_probs=61.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~~  126 (289)
                      |||+|||. |.+|+.++..|...|+  +|.++|+++..  ..++.....    .......++.+.++++|+||++..   
T Consensus         1 M~Ig~IGl-G~mG~~la~~L~~~g~--~V~~~dr~~~~--~~~l~~~g~----~~~~s~~~~~~~~~~~dvIi~~vp---   68 (298)
T TIGR00872         1 MQLGLIGL-GRMGANIVRRLAKRGH--DCVGYDHDQDA--VKAMKEDRT----TGVANLRELSQRLSAPRVVWVMVP---   68 (298)
T ss_pred             CEEEEEcc-hHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHHHcCC----cccCCHHHHHhhcCCCCEEEEEcC---
Confidence            58999998 9999999999999997  99999987622  122222110    001111233345678999999842   


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 022947          127 KPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPV  166 (289)
Q Consensus       127 ~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPv  166 (289)
                                  +- .++++++.+.... |+.+++..||..
T Consensus        69 ------------~~-~~~~v~~~l~~~l~~g~ivid~st~~   96 (298)
T TIGR00872        69 ------------HG-IVDAVLEELAPTLEKGDIVIDGGNSY   96 (298)
T ss_pred             ------------ch-HHHHHHHHHHhhCCCCCEEEECCCCC
Confidence                        11 3555556666554 667787777664

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK07102 short chain dehydrogenase; Provisional

Probab=97.51  E-value=0.0043  Score=54.80  Aligned_cols=117  Identities=18%  Similarity=0.064  Sum_probs=67.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe----cCCCHHhhh----CCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL----GQQQLEDAL----TGM  115 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~----~t~d~~eal----~~a  115 (289)
                      +++|.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++.... ..++..+.    ...++++.+    +..
T Consensus         1 ~~~vlItGas~giG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   77 (243)
T PRK07102          1 MKKILIIGATSDIARACARRYAAAGA--RLYLAARDVERLERLADDLRARG-AVAVSTHELDILDTASHAAFLDSLPALP   77 (243)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHHHHHHhhcC
Confidence            35899999999999999999999997  8999998762  22222332211 11222211    111222222    345


Q ss_pred             CEEEEcCCCCCCC---CCchh---hHHHhhHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 022947          116 DIVIIPAGVPRKP---GMTRD---DLFNINAGIVKTLCEGIAKC---CPKAIVNLISNP  165 (289)
Q Consensus       116 DiVIitag~~~~~---g~~r~---d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tNP  165 (289)
                      |++|+++|.....   ..+..   +.+..|+.....+.+.+..+   ...+.++++|-.
T Consensus        78 d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~  136 (243)
T PRK07102         78 DIVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSV  136 (243)
T ss_pred             CEEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecc
Confidence            9999998853211   22222   34566776666666555543   234566666543

>PRK06924 short chain dehydrogenase; Provisional

Probab=97.50  E-value=0.001  Score=58.98  Aligned_cols=34  Identities=15%  Similarity=0.158  Sum_probs=30.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      ++|.|+|++|.+|+.++..|+++|.  +|+++++++
T Consensus         2 k~vlItGasggiG~~ia~~l~~~g~--~V~~~~r~~   35 (251)
T PRK06924          2 RYVIITGTSQGLGEAIANQLLEKGT--HVISISRTE   35 (251)
T ss_pred             cEEEEecCCchHHHHHHHHHHhcCC--EEEEEeCCc
Confidence            4799999999999999999999997  899999865

>PRK07069 short chain dehydrogenase; Validated

Probab=97.50  E-value=0.0045  Score=54.66  Aligned_cols=114  Identities=24%  Similarity=0.305  Sum_probs=65.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCC-Cc--hhHHhhhhcccCCceE---E-EEecCCCHH-------hhhC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NT--PGVTADISHMDTNAVV---R-GFLGQQQLE-------DALT  113 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~-~~--~g~~~DL~~~~~~~~v---~-~~~~t~d~~-------eal~  113 (289)
                      ||.|+|++|.+|.+++..|+..|.  +|++++++ ..  .....++........+   . .....+++.       +.+.
T Consensus         1 ~ilVtG~~~~iG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   78 (251)
T PRK07069          1 RAFITGAAGGLGRAIARRMAEQGA--KVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMG   78 (251)
T ss_pred             CEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            488999999999999999999997  89999987 31  1122222221100111   1 111111121       2235


Q ss_pred             CCCEEEEcCCCCCCC---CCc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 022947          114 GMDIVIIPAGVPRKP---GMT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       114 ~aDiVIitag~~~~~---g~~---r~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      ..|+||.++|.....   ..+   -...+..|+.    ..+.+.+.+++... +.++++|.
T Consensus        79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~ii~~ss  138 (251)
T PRK07069         79 GLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQP-ASIVNISS  138 (251)
T ss_pred             CccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCC-cEEEEecC
Confidence            689999999865321   111   1234556666    66777777776543 45555554

>PRK06545 prephenate dehydrogenase; Validated

Probab=97.50  E-value=0.00078  Score=64.15  Aligned_cols=68  Identities=19%  Similarity=0.244  Sum_probs=46.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      +||+|||. |.+|.+++..|...|+  ++.++|.+........-....   ....  .++++++++++||+||++.
T Consensus         1 ~~I~iIG~-GliG~siA~~L~~~G~--~v~i~~~~~~~~~~~~a~~~~---~~~~--~~~~~~~~~~~aDlVilav   68 (359)
T PRK06545          1 RTVLIVGL-GLIGGSLALAIKAAGP--DVFIIGYDPSAAQLARALGFG---VIDE--LAADLQRAAAEADLIVLAV   68 (359)
T ss_pred             CeEEEEEe-CHHHHHHHHHHHhcCC--CeEEEEeCCCHHHHHHHhcCC---CCcc--cccCHHHHhcCCCEEEEeC
Confidence            37999998 9999999999999997  778888876321111100110   0000  1245678899999999985

>PRK07806 short chain dehydrogenase; Provisional

Probab=97.50  E-value=0.00092  Score=59.15  Aligned_cols=115  Identities=17%  Similarity=0.205  Sum_probs=66.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc---hhHHhhhhcccCCceEEEEe-cCCC---HHhhh------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~---~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal------  112 (289)
                      .+++.|+||+|++|.+++..|+..|.  +|++++++..   .....++....  .++..+. +-++   ....+      
T Consensus         6 ~k~vlItGasggiG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (248)
T PRK07806          6 GKTALVTGSSRGIGADTAKILAGAGA--HVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTAREE   81 (248)
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence            35899999999999999999999997  8888887641   11112222211  1121111 1112   22222      


Q ss_pred             -CCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 022947          113 -TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (289)
Q Consensus       113 -~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tN  164 (289)
                       .+.|+||+++|.......+..+.+..|......+++.+.++. ..+.++++|.
T Consensus        82 ~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS  135 (248)
T PRK07806         82 FGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTS  135 (248)
T ss_pred             CCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeC
Confidence             368999999875422111223345567777777777777654 3455555543

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=97.48  E-value=0.002  Score=57.44  Aligned_cols=114  Identities=19%  Similarity=0.237  Sum_probs=65.8

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--hHHhhhhcccCCceEE-EEecCCCHHhh-------hCCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVR-GFLGQQQLEDA-------LTGMD  116 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g~~~DL~~~~~~~~v~-~~~~t~d~~ea-------l~~aD  116 (289)
                      +++.|+|++|.+|..++..|+..|.  +|+++|++...  ....++....  ..+. ......+.+++       +...|
T Consensus         7 ~~vlItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~D~~~~~~~~~~~~~~~~~~~~id   82 (257)
T PRK07067          7 KVALLTGAASGIGEAVAERYLAEGA--RVVIADIKPARARLAALEIGPAA--IAVSLDVTRQDSIDRIVAAAVERFGGID   82 (257)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHhCCce--EEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            4799999999999999999999998  89999987621  1111221100  0011 01111122222       24689


Q ss_pred             EEEEcCCCCCC-C--CC---chhhHHHhhHHHHHHHHHHHHHh----CCCcEEEEecC
Q 022947          117 IVIIPAGVPRK-P--GM---TRDDLFNINAGIVKTLCEGIAKC----CPKAIVNLISN  164 (289)
Q Consensus       117 iVIitag~~~~-~--g~---~r~d~~~~N~~i~~~i~~~i~~~----~p~aiviv~tN  164 (289)
                      ++|+++|.... +  ..   .-.+.+..|+.....+.+.+.++    .+.+.++++|.
T Consensus        83 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS  140 (257)
T PRK07067         83 ILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMAS  140 (257)
T ss_pred             EEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            99999986421 1  11   12234666766665555555432    33456666655

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.48  E-value=0.0018  Score=59.42  Aligned_cols=100  Identities=17%  Similarity=0.117  Sum_probs=63.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCC--ccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~--~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      |+||+|||+ |.+|..++..|...+.  ..+|+++|.+... ....+...  ...+..   +.+..+.++++|+||++..
T Consensus         1 m~~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~-~~~~l~~~--~~~~~~---~~~~~e~~~~aDvVilavp   73 (277)
T PRK06928          1 MEKIGFIGY-GSMADMIATKLLETEVATPEEIILYSSSKNE-HFNQLYDK--YPTVEL---ADNEAEIFTKCDHSFICVP   73 (277)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCCCCcccEEEEeCCcHH-HHHHHHHH--cCCeEE---eCCHHHHHhhCCEEEEecC
Confidence            468999998 9999999999888772  2488999886421 11112211  111221   2355677899999999852


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcc
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS  168 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~  168 (289)
                                      ...++++++.+..+- ++..|+.+.|-++.
T Consensus        74 ----------------p~~~~~vl~~l~~~l~~~~~ivS~~aGi~~  103 (277)
T PRK06928         74 ----------------PLAVLPLLKDCAPVLTPDRHVVSIAAGVSL  103 (277)
T ss_pred             ----------------HHHHHHHHHHHHhhcCCCCEEEEECCCCCH
Confidence                            123556666666544 45667767776654

>PRK06172 short chain dehydrogenase; Provisional

Probab=97.47  E-value=0.0023  Score=56.90  Aligned_cols=114  Identities=15%  Similarity=0.090  Sum_probs=64.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCC---CHHhhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQ---QLEDAL-------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~---d~~eal-------  112 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|+++++++.  .....++....  .++..+. +-+   ++.+.+       
T Consensus         7 ~k~ilItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~   82 (253)
T PRK06172          7 GKVALVTGGAAGIGRATALAFAREGA--KVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAAY   82 (253)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            35899999999999999999999887  8999998762  22222332221  1222211 111   222223       


Q ss_pred             CCCCEEEEcCCCCCCC----CCch---hhHHHhhHHHHHHHH----HHHHHhCCCcEEEEecC
Q 022947          113 TGMDIVIIPAGVPRKP----GMTR---DDLFNINAGIVKTLC----EGIAKCCPKAIVNLISN  164 (289)
Q Consensus       113 ~~aDiVIitag~~~~~----g~~r---~d~~~~N~~i~~~i~----~~i~~~~p~aiviv~tN  164 (289)
                      ...|+||.++|.....    ..+.   .+.+..|+.....+.    +.+.+. ..+.++++|.
T Consensus        83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~ii~~sS  144 (253)
T PRK06172         83 GRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQ-GGGAIVNTAS  144 (253)
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEECc
Confidence            2459999999864221    1222   234556665554333    344333 2345555554

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.47  E-value=0.0013  Score=58.76  Aligned_cols=100  Identities=9%  Similarity=0.157  Sum_probs=59.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCC--ccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~--~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      +.+||+|||+ |.+|..++..++..+.  ..+++.++.+.. ....++.+..   .+..   +.++++.++++|+||++.
T Consensus         3 ~~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~---~~~~---~~~~~~~~~~~DiViiav   74 (245)
T PRK07634          3 KKHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRSNV-EKLDQLQARY---NVST---TTDWKQHVTSVDTIVLAM   74 (245)
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCCCH-HHHHHHHHHc---CcEE---eCChHHHHhcCCEEEEec
Confidence            3579999998 9999999998887652  334777776421 1122222211   1222   235678889999999984


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcc
Q 022947          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS  168 (289)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~  168 (289)
                      .                -...+++++.+..+-++.+|+.++.-++.
T Consensus        75 p----------------~~~~~~v~~~l~~~~~~~~vis~~~gi~~  104 (245)
T PRK07634         75 P----------------PSAHEELLAELSPLLSNQLVVTVAAGIGP  104 (245)
T ss_pred             C----------------HHHHHHHHHHHHhhccCCEEEEECCCCCH
Confidence            2                11234455555544344466655555543

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=97.47  E-value=0.00045  Score=56.98  Aligned_cols=118  Identities=18%  Similarity=0.215  Sum_probs=72.3

Q ss_pred             EEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHh-----hhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA-----DISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~-----DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      |+|+|+ |.+|..+|..|.+.+.  +|.+++..+ .....     .+........+.......+..+....+|+||+|.-
T Consensus         1 I~I~G~-GaiG~~~a~~L~~~g~--~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK   76 (151)
T PF02558_consen    1 ILIIGA-GAIGSLYAARLAQAGH--DVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK   76 (151)
T ss_dssp             EEEEST-SHHHHHHHHHHHHTTC--EEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred             CEEECc-CHHHHHHHHHHHHCCC--ceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEec
Confidence            789999 9999999999999888  999999865 11111     11111101111111111122246799999999952


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEE-eee
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG-VTM  193 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG-~t~  193 (289)
                      ..                -..+.++.++.+. |++.|+.+-|=++..-     .+.+.  +|+.+|++ ++.
T Consensus        77 a~----------------~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~-----~l~~~--~~~~~v~~g~~~  125 (151)
T PF02558_consen   77 AY----------------QLEQALQSLKPYLDPNTTIVSLQNGMGNEE-----VLAEY--FPRPRVLGGVTT  125 (151)
T ss_dssp             GG----------------GHHHHHHHHCTGEETTEEEEEESSSSSHHH-----HHHCH--STGSGEEEEEEE
T ss_pred             cc----------------chHHHHHHHhhccCCCcEEEEEeCCCCcHH-----HHHHH--cCCCcEEEEEEe
Confidence            11                1344666677776 7778888889887653     33433  56778875 444

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=97.46  E-value=0.00058  Score=62.88  Aligned_cols=63  Identities=14%  Similarity=0.261  Sum_probs=46.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      ||+|||. |.+|+.++..|+..|+  +|.++|+++..  ...+.....    .   ..++..+++++||+||++.
T Consensus         1 ~IgvIG~-G~mG~~iA~~l~~~G~--~V~~~dr~~~~--~~~~~~~g~----~---~~~~~~~~~~~aDivi~~v   63 (291)
T TIGR01505         1 KVGFIGL-GIMGSPMSINLAKAGY--QLHVTTIGPEV--ADELLAAGA----V---TAETARQVTEQADVIFTMV   63 (291)
T ss_pred             CEEEEEe-cHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHCCC----c---ccCCHHHHHhcCCEEEEec
Confidence            5999998 9999999999999998  99999987521  122222211    1   1235668899999999985

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]

Probab=97.46  E-value=0.00099  Score=61.97  Aligned_cols=106  Identities=17%  Similarity=0.257  Sum_probs=64.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--hH-----------HhhhhcccCCceEEEEecCCCHHhhh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GV-----------TADISHMDTNAVVRGFLGQQQLEDAL  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g~-----------~~DL~~~~~~~~v~~~~~t~d~~eal  112 (289)
                      ++||+-||| |+||......++..=.-.+|.++|++..+  ..           .-|........++- +  ++|.+.++
T Consensus         1 ~~kicciga-gyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlf-f--stdiekai   76 (481)
T KOG2666|consen    1 MVKICCIGA-GYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLF-F--STDIEKAI   76 (481)
T ss_pred             CceEEEecC-cccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCcee-e--ecchHHHh
Confidence            469999999 99998776544443222399999998621  00           01111111122333 2  46889999


Q ss_pred             CCCCEEEEcCCCCCCC-C--CchhhHHHhhHHHHHHHHHHHHHhCCCcEE
Q 022947          113 TGMDIVIIPAGVPRKP-G--MTRDDLFNINAGIVKTLCEGIAKCCPKAIV  159 (289)
Q Consensus       113 ~~aDiVIitag~~~~~-g--~~r~d~~~~N~~i~~~i~~~i~~~~p~aiv  159 (289)
                      +.||+||+....|.|. |  .-|    ...++.+...++.|.+++...++
T Consensus        77 ~eadlvfisvntptkt~g~gkg~----aadlky~es~ar~ia~~s~~~ki  122 (481)
T KOG2666|consen   77 KEADLVFISVNTPTKTYGLGKGK----AADLKYWESAARMIADVSVSDKI  122 (481)
T ss_pred             hhcceEEEEecCCcccccCCCCc----ccchhHHHHHHHHHHHhccCCeE
Confidence            9999999999888764 2  222    12455566666666666533333

>PRK08265 short chain dehydrogenase; Provisional

Probab=97.46  E-value=0.0024  Score=57.31  Aligned_cols=112  Identities=17%  Similarity=0.138  Sum_probs=63.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--hHHhhhhcccCCceEEEE----ecCCCHHhh-------h
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGF----LGQQQLEDA-------L  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g~~~DL~~~~~~~~v~~~----~~t~d~~ea-------l  112 (289)
                      .+++.|+|++|.+|..++..|+..|.  +|++.|++...  ....++.     .++..+    ....++++.       +
T Consensus         6 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~~~   78 (261)
T PRK08265          6 GKVAIVTGGATLIGAAVARALVAAGA--RVAIVDIDADNGAAVAASLG-----ERARFIATDITDDAAIERAVATVVARF   78 (261)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CeeEEEEecCCCHHHHHHHHHHHHHHh
Confidence            45899999999999999999999998  99999987621  1111111     111111    111112222       3


Q ss_pred             CCCCEEEEcCCCCCCC--CCch---hhHHHhhHHHHHHHHHHHHHh--CCCcEEEEecC
Q 022947          113 TGMDIVIIPAGVPRKP--GMTR---DDLFNINAGIVKTLCEGIAKC--CPKAIVNLISN  164 (289)
Q Consensus       113 ~~aDiVIitag~~~~~--g~~r---~d~~~~N~~i~~~i~~~i~~~--~p~aiviv~tN  164 (289)
                      ...|++|.++|.....  ..+.   .+.+..|+.....+.+.+..+  .+.+.+++++.
T Consensus        79 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS  137 (261)
T PRK08265         79 GRVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTS  137 (261)
T ss_pred             CCCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECc
Confidence            4679999999864322  1222   233455655444444433322  34566666654

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.45  E-value=0.0012  Score=60.50  Aligned_cols=100  Identities=14%  Similarity=0.164  Sum_probs=61.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCC--ccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~--~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      +.|||++||+ |.+|.+++..|+..+.  ..+|+++|++.. ....++....   .+..   +.+..+.+++||+||++.
T Consensus         2 ~~mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~v~~r~~~-~~~~~l~~~~---g~~~---~~~~~e~~~~aDvVilav   73 (279)
T PRK07679          2 SIQNISFLGA-GSIAEAIIGGLLHANVVKGEQITVSNRSNE-TRLQELHQKY---GVKG---THNKKELLTDANILFLAM   73 (279)
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCCH-HHHHHHHHhc---CceE---eCCHHHHHhcCCEEEEEe
Confidence            4579999998 9999999999988761  247888887541 1122222211   1222   234567789999999985


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCCCcc
Q 022947          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNS  168 (289)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~-~p~aiviv~tNPvd~  168 (289)
                      -    +            ..+.++++.+..+ .++.+|+.+.+-++.
T Consensus        74 ~----p------------~~~~~vl~~l~~~~~~~~liIs~~aGi~~  104 (279)
T PRK07679         74 K----P------------KDVAEALIPFKEYIHNNQLIISLLAGVST  104 (279)
T ss_pred             C----H------------HHHHHHHHHHHhhcCCCCEEEEECCCCCH
Confidence            2    1            1123333455544 356677666566543

>TIGR01746 Thioester-redct thioester reductase domain

Probab=97.45  E-value=0.0011  Score=61.64  Aligned_cols=111  Identities=13%  Similarity=0.051  Sum_probs=69.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHh-hhh---------cccCC-ceEEEEecC----------C
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA-DIS---------HMDTN-AVVRGFLGQ----------Q  106 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~-DL~---------~~~~~-~~v~~~~~t----------~  106 (289)
                      +|.|+||+|++|++++..|+..|...+|+++.++....... .+.         +.... .++..+.+.          .
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~   80 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA   80 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence            58899999999999999999888544799988765211110 110         00000 233332211          1


Q ss_pred             CHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEE
Q 022947          107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV  159 (289)
Q Consensus       107 d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiv  159 (289)
                      ++.+...++|+||++|+.... .....++...|+.....+++...+.....++
T Consensus        81 ~~~~~~~~~d~vih~a~~~~~-~~~~~~~~~~nv~g~~~ll~~a~~~~~~~~v  132 (367)
T TIGR01746        81 EWERLAENVDTIVHNGALVNW-VYPYSELRAANVLGTREVLRLAASGRAKPLH  132 (367)
T ss_pred             HHHHHHhhCCEEEeCCcEecc-CCcHHHHhhhhhHHHHHHHHHHhhCCCceEE
Confidence            244556899999999885432 2233456678888888888888776554433

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=97.45  E-value=0.00015  Score=66.73  Aligned_cols=96  Identities=22%  Similarity=0.247  Sum_probs=59.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhh--CCCCEEEEcCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL--TGMDIVIIPAGV  124 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal--~~aDiVIitag~  124 (289)
                      |||.|+|++|++|+.+...|...++  +++.++..+     .|+.+..            .+.+.+  .+.|+||+||+.
T Consensus         1 MriLI~GasG~lG~~l~~~l~~~~~--~v~~~~r~~-----~dl~d~~------------~~~~~~~~~~pd~Vin~aa~   61 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKERGY--EVIATSRSD-----LDLTDPE------------AVAKLLEAFKPDVVINCAAY   61 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTTSE--EEEEESTTC-----S-TTSHH------------HHHHHHHHH--SEEEE----
T ss_pred             CEEEEECCCCHHHHHHHHHHhhCCC--EEEEeCchh-----cCCCCHH------------HHHHHHHHhCCCeEecccee
Confidence            7999999999999999999988887  888886542     3333321            111222  258999999986


Q ss_pred             CCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          125 PRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       125 ~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      ....  ..+.......|+.....+++...+.+  +.+|.+|
T Consensus        62 ~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~--~~li~~S  100 (286)
T PF04321_consen   62 TNVDACEKNPEEAYAINVDATKNLAEACKERG--ARLIHIS  100 (286)
T ss_dssp             --HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT---EEEEEE
T ss_pred             ecHHhhhhChhhhHHHhhHHHHHHHHHHHHcC--CcEEEee
Confidence            4211  12344566789999999999888763  4554443

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=97.45  E-value=0.0021  Score=56.42  Aligned_cols=114  Identities=23%  Similarity=0.331  Sum_probs=64.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHh-------hh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LED-------AL  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~e-------al  112 (289)
                      .+++.|+||+|.+|..++..|+.+|.  .|++.+.+..  .....++.     .++..+. +-.+   +++       .+
T Consensus         6 ~~~vlItGa~g~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (245)
T PRK12936          6 GRKALVTGASGGIGEEIARLLHAQGA--IVGLHGTRVEKLEALAAELG-----ERVKIFPANLSDRDEVKALGQKAEADL   78 (245)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhC-----CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999997  7888877641  11111111     1111110 1111   211       13


Q ss_pred             CCCCEEEEcCCCCCCC---C---CchhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecCCC
Q 022947          113 TGMDIVIIPAGVPRKP---G---MTRDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPV  166 (289)
Q Consensus       113 ~~aDiVIitag~~~~~---g---~~r~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tNPv  166 (289)
                      ...|+||.++|.....   .   .+-.+.+..|+.....+++.+.+.   .+.+.++++|...
T Consensus        79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~  141 (245)
T PRK12936         79 EGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVV  141 (245)
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHH
Confidence            4689999999864321   1   112334566666555554444322   2445666666543

>PRK07774 short chain dehydrogenase; Provisional

Probab=97.44  E-value=0.0063  Score=53.73  Aligned_cols=114  Identities=18%  Similarity=0.161  Sum_probs=65.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEE-ecCCCHH---h-------hh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGF-LGQQQLE---D-------AL  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~-~~t~d~~---e-------al  112 (289)
                      .+++.|+|++|++|.+++..|+..|.  +|+++|+++.  .....++.+..  ..+..+ .+-++.+   +       .+
T Consensus         6 ~k~vlItGasg~iG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   81 (250)
T PRK07774          6 DKVAIVTGAAGGIGQAYAEALAREGA--SVVVADINAEGAERVAKQIVADG--GTAIAVQVDVSDPDSAKAMADATVSAF   81 (250)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            45899999999999999999999997  8999998752  11112222211  111111 1112221   1       22


Q ss_pred             CCCCEEEEcCCCCCC----C--CCch---hhHHHhhHHHHHHHHHHHHHhC---CCcEEEEec
Q 022947          113 TGMDIVIIPAGVPRK----P--GMTR---DDLFNINAGIVKTLCEGIAKCC---PKAIVNLIS  163 (289)
Q Consensus       113 ~~aDiVIitag~~~~----~--g~~r---~d~~~~N~~i~~~i~~~i~~~~---p~aiviv~t  163 (289)
                      ...|+||+++|....    +  ..+.   .+.+..|+.....+.+.+.++.   +.+.++++|
T Consensus        82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~s  144 (250)
T PRK07774         82 GGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQS  144 (250)
T ss_pred             CCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEe
Confidence            468999999986421    1  1111   2345567666555555555432   235666655

>PRK08278 short chain dehydrogenase; Provisional

Probab=97.43  E-value=0.0051  Score=55.71  Aligned_cols=158  Identities=16%  Similarity=0.171  Sum_probs=85.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch---------hHHhhhhcccCCceEEEE----ecCCCHHhhh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---------GVTADISHMDTNAVVRGF----LGQQQLEDAL  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~---------g~~~DL~~~~~~~~v~~~----~~t~d~~eal  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|++++++...         ....++....  .++..+    ....+..+.+
T Consensus         6 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~   81 (273)
T PRK08278          6 GKTLFITGASRGIGLAIALRAARDGA--NIVIAAKTAEPHPKLPGTIHTAAEEIEAAG--GQALPLVGDVRDEDQVAAAV   81 (273)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecccccccchhhHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHH
Confidence            35899999999999999999999997  89999986521         1111222111  112111    1111222222


Q ss_pred             -------CCCCEEEEcCCCCCC-C--CCch---hhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecCCCcccHHHHHHH
Q 022947          113 -------TGMDIVIIPAGVPRK-P--GMTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEV  176 (289)
Q Consensus       113 -------~~aDiVIitag~~~~-~--g~~r---~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tNPvd~~t~~~~~~  176 (289)
                             ...|++|+++|.... +  ..+.   ...+..|+.....+.+.+..+   ...+.++++|.+.....      
T Consensus        82 ~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~------  155 (273)
T PRK08278         82 AKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNLDP------  155 (273)
T ss_pred             HHHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhccc------
Confidence                   368999999986421 1  1222   223455655554555444432   23466766664432110      


Q ss_pred             HHHhCCCCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          177 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       177 ~~~~~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                          ..++....++.+..-..++-+.++++++  +..|++..+
T Consensus       156 ----~~~~~~~~Y~~sK~a~~~~~~~la~el~--~~~I~v~~i  192 (273)
T PRK08278        156 ----KWFAPHTAYTMAKYGMSLCTLGLAEEFR--DDGIAVNAL  192 (273)
T ss_pred             ----cccCCcchhHHHHHHHHHHHHHHHHHhh--hcCcEEEEE
Confidence                0123344556554444556677777775  345655544

>PRK12828 short chain dehydrogenase; Provisional

Probab=97.43  E-value=0.0013  Score=57.47  Aligned_cols=115  Identities=17%  Similarity=0.192  Sum_probs=64.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--hHHhhhhcccCCceEEE--EecCCCHHhh-------hCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRG--FLGQQQLEDA-------LTG  114 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g~~~DL~~~~~~~~v~~--~~~t~d~~ea-------l~~  114 (289)
                      .++|.|+|++|.+|..++..|+++|.  +|+++|++...  ....++....  ..+..  .....+++++       +..
T Consensus         7 ~k~vlItGatg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (239)
T PRK12828          7 GKVVAITGGFGGLGRATAAWLAARGA--RVALIGRGAAPLSQTLPGVPADA--LRIGGIDLVDPQAARRAVDEVNRQFGR   82 (239)
T ss_pred             CCEEEEECCCCcHhHHHHHHHHHCCC--eEEEEeCChHhHHHHHHHHhhcC--ceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            45899999999999999999999997  89999987621  1122222211  11111  1111122222       336


Q ss_pred             CCEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 022947          115 MDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (289)
Q Consensus       115 aDiVIitag~~~~~---g~~r---~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tN  164 (289)
                      .|+||.++|.....   ..+.   .+.+..|......+++.+.+.   .+...+++++.
T Consensus        83 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS  141 (239)
T PRK12828         83 LDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGA  141 (239)
T ss_pred             cCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECc
Confidence            89999998854211   1111   223445655555555554322   23445655554

>PRK07856 short chain dehydrogenase; Provisional

Probab=97.43  E-value=0.0027  Score=56.49  Aligned_cols=109  Identities=13%  Similarity=0.096  Sum_probs=64.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEE----ecCCCHHhhh-------CC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGF----LGQQQLEDAL-------TG  114 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~----~~t~d~~eal-------~~  114 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|++... .   ...    ..+..+    ....++++.+       ..
T Consensus         6 ~k~~lItGas~gIG~~la~~l~~~g~--~v~~~~r~~~~-~---~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   75 (252)
T PRK07856          6 GRVVLVTGGTRGIGAGIARAFLAAGA--TVVVCGRRAPE-T---VDG----RPAEFHAADVRDPDQVAALVDAIVERHGR   75 (252)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCChhh-h---hcC----CceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            45899999999999999999999997  89999986521 0   000    011111    1111222333       35


Q ss_pred             CCEEEEcCCCCCC-C--CCc---hhhHHHhhHHHHHHHHHHHHH----hCCCcEEEEecC
Q 022947          115 MDIVIIPAGVPRK-P--GMT---RDDLFNINAGIVKTLCEGIAK----CCPKAIVNLISN  164 (289)
Q Consensus       115 aDiVIitag~~~~-~--g~~---r~d~~~~N~~i~~~i~~~i~~----~~p~aiviv~tN  164 (289)
                      .|+||.++|.... +  ..+   ....+..|+.....+.+.+.+    ....+.++++|.
T Consensus        76 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS  135 (252)
T PRK07856         76 LDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGS  135 (252)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence            6999999986422 1  111   234556676666555555443    223356666664

>PRK12937 short chain dehydrogenase; Provisional

Probab=97.42  E-value=0.0032  Score=55.41  Aligned_cols=115  Identities=15%  Similarity=0.113  Sum_probs=65.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc---hhHHhhhhcccCCceEEEEe----cCCCHHhhh------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFL----GQQQLEDAL------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~---~g~~~DL~~~~~~~~v~~~~----~t~d~~eal------  112 (289)
                      .++|.|+|++|.+|+.++..|+..|.  ++++++.+..   .....++...  ..++..+.    ...++++.+      
T Consensus         5 ~~~vlItG~~~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~   80 (245)
T PRK12937          5 NKVAIVTGASRGIGAAIARRLAADGF--AVAVNYAGSAAAADELVAEIEAA--GGRAIAVQADVADAAAVTRLFDAAETA   80 (245)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999999997  7877765441   1111222221  11222211    111222333      


Q ss_pred             -CCCCEEEEcCCCCCCC---C---CchhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecC
Q 022947          113 -TGMDIVIIPAGVPRKP---G---MTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISN  164 (289)
Q Consensus       113 -~~aDiVIitag~~~~~---g---~~r~d~~~~N~~i~~~i~~~i~~~-~p~aiviv~tN  164 (289)
                       .+.|+||+++|.....   .   +.-...+..|+.....+.+.+.+. .+.+.++++|.
T Consensus        81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss  140 (245)
T PRK12937         81 FGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLST  140 (245)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEee
Confidence             3689999999864211   0   112234556766555555555443 24556666653

>PLN02996 fatty acyl-CoA reductase

Probab=97.42  E-value=0.0022  Score=63.70  Aligned_cols=121  Identities=18%  Similarity=0.121  Sum_probs=74.0

Q ss_pred             CCCCCCEEEEEcCCCccHHHHHHHHHhC-CCccEEEEEeCCCc--hh--HH-hhhhccc----------------CCceE
Q 022947           42 GGSPGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNT--PG--VT-ADISHMD----------------TNAVV   99 (289)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~-g~~~eI~LvD~~~~--~g--~~-~DL~~~~----------------~~~~v   99 (289)
                      +|-+.++|.|+||+||+|+.++..|+.. +-...|+++.+...  ..  .. .++....                ...++
T Consensus         7 ~~~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv   86 (491)
T PLN02996          7 QFLENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKV   86 (491)
T ss_pred             HHhCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCE
Confidence            4556678999999999999999877754 34567888876541  11  00 1111110                01234


Q ss_pred             EEEecCC----------C-HHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEec
Q 022947          100 RGFLGQQ----------Q-LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS  163 (289)
Q Consensus       100 ~~~~~t~----------d-~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~t  163 (289)
                      ..+.+.-          + +++.++++|+||++|+...- .....+....|+....++++.+.+.. .+.++.+.|
T Consensus        87 ~~i~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~vST  161 (491)
T PLN02996         87 TPVPGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTNF-DERYDVALGINTLGALNVLNFAKKCVKVKMLLHVST  161 (491)
T ss_pred             EEEecccCCcCCCCChHHHHHHHHhCCCEEEECccccCC-cCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEee
Confidence            4332211          1 34566899999999986432 23345567889999999998887653 344444433

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=97.41  E-value=0.00086  Score=64.31  Aligned_cols=54  Identities=19%  Similarity=0.361  Sum_probs=43.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      ..+||+|||+.|.+|.+++..|...|+  +|.++|++..                      ++.++++++||+||++.
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~--~V~~~d~~~~----------------------~~~~~~~~~aDlVilav  150 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGY--QVRILEQDDW----------------------DRAEDILADAGMVIVSV  150 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCC--eEEEeCCCcc----------------------hhHHHHHhcCCEEEEeC
Confidence            447999999559999999999999997  8999997420                      12457789999999995

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=97.41  E-value=0.0076  Score=53.25  Aligned_cols=115  Identities=19%  Similarity=0.223  Sum_probs=65.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEe-cCCC---HH-------hhhCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQ---LE-------DALTG  114 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~-~t~d---~~-------eal~~  114 (289)
                      .++|.|+||+|.+|.+++..|+..|.  +|+++++++.......+....  .++..+. +-++   +.       +.+..
T Consensus         5 ~k~vlItGas~gIG~~ia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (248)
T TIGR01832         5 GKVALVTGANTGLGQGIAVGLAEAGA--DIVGAGRSEPSETQQQVEALG--RRFLSLTADLSDIEAIKALVDSAVEEFGH   80 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCchHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            46899999999999999999999997  899999765222112222111  1122111 1111   11       22356


Q ss_pred             CCEEEEcCCCCCCCC---C---chhhHHHhhHHHHHHHHHHHH----HhCCCcEEEEecC
Q 022947          115 MDIVIIPAGVPRKPG---M---TRDDLFNINAGIVKTLCEGIA----KCCPKAIVNLISN  164 (289)
Q Consensus       115 aDiVIitag~~~~~g---~---~r~d~~~~N~~i~~~i~~~i~----~~~p~aiviv~tN  164 (289)
                      .|++|.++|......   .   .-.+.+..|+.....+.+.+.    +....+.+++++.
T Consensus        81 ~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS  140 (248)
T TIGR01832        81 IDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIAS  140 (248)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            899999998643211   1   122345667655544554443    3332456666554

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=97.39  E-value=0.018  Score=51.00  Aligned_cols=119  Identities=19%  Similarity=0.196  Sum_probs=67.2

Q ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEE--ecC----C-------C
Q 022947           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGF--LGQ----Q-------Q  107 (289)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~--~~t----~-------d  107 (289)
                      ..+.++|.|+|++|++|..++..|+..|.  +|+++|++..  .....++.+.. ...+..+  ..+    .       .
T Consensus         9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~   85 (247)
T PRK08945          9 LLKDRIILVTGAGDGIGREAALTYARHGA--TVILLGRTEEKLEAVYDEIEAAG-GPQPAIIPLDLLTATPQNYQQLADT   85 (247)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHhcC-CCCceEEEecccCCCHHHHHHHHHH
Confidence            34566899999999999999999999887  9999998762  22223333321 1111111  000    0       1


Q ss_pred             HHhhhCCCCEEEEcCCCCCC--C--CCch---hhHHHhhHHHHHHHHHHHHH---hCCCcEEEEecC
Q 022947          108 LEDALTGMDIVIIPAGVPRK--P--GMTR---DDLFNINAGIVKTLCEGIAK---CCPKAIVNLISN  164 (289)
Q Consensus       108 ~~eal~~aDiVIitag~~~~--~--g~~r---~d~~~~N~~i~~~i~~~i~~---~~p~aiviv~tN  164 (289)
                      +.+.+...|+||+++|....  +  ..+.   ...+..|+.....+.+.+.+   ..+...++++|.
T Consensus        86 ~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss  152 (247)
T PRK08945         86 IEEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSS  152 (247)
T ss_pred             HHHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEcc
Confidence            22334568999999986322  1  1122   23455666654444444332   124455666554

>PRK05875 short chain dehydrogenase; Provisional

Probab=97.38  E-value=0.0058  Score=55.06  Aligned_cols=117  Identities=15%  Similarity=0.081  Sum_probs=65.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal-------  112 (289)
                      .++|.|+|++|.+|+.++..|+..|.  +|++++++..  .....++.......++..+. +-.|   ..+.+       
T Consensus         7 ~k~vlItGasg~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (276)
T PRK05875          7 DRTYLVTGGGSGIGKGVAAGLVAAGA--AVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWH   84 (276)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999999998  8999998752  22222222111011222111 1112   22223       


Q ss_pred             CCCCEEEEcCCCCCCC----CCch---hhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 022947          113 TGMDIVIIPAGVPRKP----GMTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (289)
Q Consensus       113 ~~aDiVIitag~~~~~----g~~r---~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tN  164 (289)
                      ...|++|+++|.....    ..+.   .+.+..|+.....+.+.+.+.   ...+.++++|.
T Consensus        85 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS  146 (276)
T PRK05875         85 GRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISS  146 (276)
T ss_pred             CCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEec
Confidence            2689999999854221    1111   223455666555555444332   23456666554

>PRK08507 prephenate dehydrogenase; Validated

Probab=97.37  E-value=0.0013  Score=60.22  Aligned_cols=66  Identities=21%  Similarity=0.356  Sum_probs=44.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      |||+|||. |.+|.+++..|...|+..+|+.+|+++..  ..++.....   ...   ..++.+ +.++|+||++.
T Consensus         1 m~I~iIG~-G~mG~sla~~l~~~g~~~~v~~~d~~~~~--~~~~~~~g~---~~~---~~~~~~-~~~aD~Vilav   66 (275)
T PRK08507          1 MKIGIIGL-GLMGGSLGLALKEKGLISKVYGYDHNELH--LKKALELGL---VDE---IVSFEE-LKKCDVIFLAI   66 (275)
T ss_pred             CEEEEEcc-CHHHHHHHHHHHhcCCCCEEEEEcCCHHH--HHHHHHCCC---Ccc---cCCHHH-HhcCCEEEEeC
Confidence            58999998 99999999999988865578999987521  111111110   001   124444 45699999985

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=97.37  E-value=0.0028  Score=55.97  Aligned_cols=114  Identities=18%  Similarity=0.214  Sum_probs=64.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEec-CCC---HHhhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDAL-------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~eal-------  112 (289)
                      .++|.|+||+|++|+.++..|+..|.  +|+++|++..  .....++....  .++..+.. -.+   .++.+       
T Consensus         3 ~~~ilItGas~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~   78 (250)
T TIGR03206         3 DKTAIVTGGGGGIGGATCRRFAEEGA--KVAVFDLNREAAEKVAADIRAKG--GNAQAFACDITDRDSVDTAVAAAEQAL   78 (250)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999999997  8999998762  11122232211  12222111 111   22222       


Q ss_pred             CCCCEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHHHH----HhCCCcEEEEecC
Q 022947          113 TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIA----KCCPKAIVNLISN  164 (289)
Q Consensus       113 ~~aDiVIitag~~~~~---g~~r---~d~~~~N~~i~~~i~~~i~----~~~p~aiviv~tN  164 (289)
                      ...|++|+++|.....   ..+.   ...+..|+.....+.+.+.    +. +...+++++.
T Consensus        79 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~ii~iss  139 (250)
T TIGR03206        79 GPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVER-GAGRIVNIAS  139 (250)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCeEEEEECc
Confidence            3689999999863221   1111   2245667666655555443    33 3344555554

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.36  E-value=0.0065  Score=53.44  Aligned_cols=117  Identities=17%  Similarity=0.219  Sum_probs=65.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCC---CHHhhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQ---QLEDAL-------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~---d~~eal-------  112 (289)
                      .+++.|+|++|.+|..++..|+..|.  +|++++++..  .....++...  ..++..+. +-+   ++.+++       
T Consensus         7 ~~~vlVtG~sg~iG~~l~~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (239)
T PRK07666          7 GKNALITGAGRGIGRAVAIALAKEGV--NVGLLARTEENLKAVAEEVEAY--GVKVVIATADVSDYEEVTAAIEQLKNEL   82 (239)
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHh--CCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999997  8999998762  1112233221  11222211 111   222223       


Q ss_pred             CCCCEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecCCC
Q 022947          113 TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPV  166 (289)
Q Consensus       113 ~~aDiVIitag~~~~~---g~~r---~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tNPv  166 (289)
                      .+.|+||+++|.....   ..+.   .+.+..|+.....+.+.+.++   ...+.+++++...
T Consensus        83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~  145 (239)
T PRK07666         83 GSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTA  145 (239)
T ss_pred             CCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchh
Confidence            3799999999864321   1111   234556665444444444432   2234455555443

>PRK06914 short chain dehydrogenase; Provisional

Probab=97.36  E-value=0.007  Score=54.64  Aligned_cols=35  Identities=14%  Similarity=0.047  Sum_probs=31.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .+++.|+||+|.+|..++..|+.+|.  +|++++++.
T Consensus         3 ~k~~lItGasg~iG~~la~~l~~~G~--~V~~~~r~~   37 (280)
T PRK06914          3 KKIAIVTGASSGFGLLTTLELAKKGY--LVIATMRNP   37 (280)
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCC--EEEEEeCCH
Confidence            34689999999999999999999997  899998865

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.35  E-value=0.00072  Score=62.45  Aligned_cols=90  Identities=22%  Similarity=0.291  Sum_probs=58.4

Q ss_pred             ccccccccccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCceEEEEecCCCH
Q 022947           31 SGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQL  108 (289)
Q Consensus        31 ~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~  108 (289)
                      .+|-+.........+.+||+|+|+ |.+|.++++.|+..|. .+|+++|++.  ++..+.++.+..  +..... ..+++
T Consensus       112 ~G~~~~l~~~~~~~~~k~vlIlGa-GGaaraia~aL~~~G~-~~I~I~nR~~~ka~~la~~l~~~~--~~~~~~-~~~~~  186 (284)
T PRK12549        112 SGFAESFRRGLPDASLERVVQLGA-GGAGAAVAHALLTLGV-ERLTIFDVDPARAAALADELNARF--PAARAT-AGSDL  186 (284)
T ss_pred             HHHHHHHHhhccCccCCEEEEECC-cHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHhhC--CCeEEE-eccch
Confidence            445555433222234569999998 9999999999998884 5899999986  333444444322  112221 12344


Q ss_pred             HhhhCCCCEEEEc--CCCC
Q 022947          109 EDALTGMDIVIIP--AGVP  125 (289)
Q Consensus       109 ~eal~~aDiVIit--ag~~  125 (289)
                      ++.++++|+||.|  +|+.
T Consensus       187 ~~~~~~aDiVInaTp~Gm~  205 (284)
T PRK12549        187 AAALAAADGLVHATPTGMA  205 (284)
T ss_pred             HhhhCCCCEEEECCcCCCC
Confidence            5678999999998  5654

>PRK08263 short chain dehydrogenase; Provisional

Probab=97.34  E-value=0.0011  Score=59.98  Aligned_cols=112  Identities=13%  Similarity=-0.010  Sum_probs=62.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEe-cCCC---HHh-------hhCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQ---LED-------ALTG  114 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~-~t~d---~~e-------al~~  114 (289)
                      .++|.|+||+|.+|++++..|+.+|.  +|++.+++....  .++.+.. ...+..+. +-+|   +.+       .+..
T Consensus         3 ~k~vlItGasg~iG~~~a~~l~~~g~--~V~~~~r~~~~~--~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   77 (275)
T PRK08263          3 EKVWFITGASRGFGRAWTEAALERGD--RVVATARDTATL--ADLAEKY-GDRLLPLALDVTDRAAVFAAVETAVEHFGR   77 (275)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHHhc-cCCeeEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            34799999999999999999999997  899999875211  1111110 00111110 0111   111       2346


Q ss_pred             CCEEEEcCCCCCCC---CCc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEec
Q 022947          115 MDIVIIPAGVPRKP---GMT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       115 aDiVIitag~~~~~---g~~---r~d~~~~N~~i~----~~i~~~i~~~~p~aiviv~t  163 (289)
                      .|.||+++|.....   ..+   -.+.+..|+...    +.+.+.+++.... .++++|
T Consensus        78 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~vs  135 (275)
T PRK08263         78 LDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSG-HIIQIS  135 (275)
T ss_pred             CCEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-EEEEEc
Confidence            79999999975321   111   223455666654    4455555554444 444444

>PRK06101 short chain dehydrogenase; Provisional

Probab=97.34  E-value=0.0048  Score=54.60  Aligned_cols=114  Identities=19%  Similarity=0.180  Sum_probs=65.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCce-EE-EEecCCCHHhhhCC----CCEEEE
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAV-VR-GFLGQQQLEDALTG----MDIVII  120 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~-v~-~~~~t~d~~eal~~----aDiVIi  120 (289)
                      .++.|+||+|.+|..++..|+.+|.  +|+++|+++...  .++........ +. ..+..+++++.++.    .|.+|+
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~--~V~~~~r~~~~~--~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i~   77 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGW--QVIACGRNQSVL--DELHTQSANIFTLAFDVTDHPGTKAALSQLPFIPELWIF   77 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCC--EEEEEECCHHHH--HHHHHhcCCCeEEEeeCCCHHHHHHHHHhcccCCCEEEE
Confidence            4799999999999999999999997  899999875211  11111100001 11 11111223333333    478888


Q ss_pred             cCCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 022947          121 PAGVPRKPG---MTR---DDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (289)
Q Consensus       121 tag~~~~~g---~~r---~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tN  164 (289)
                      .+|......   .+.   .+.+..|+.....+.+.+...- +...+++++.
T Consensus        78 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS  128 (240)
T PRK06101         78 NAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGS  128 (240)
T ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEec
Confidence            887532111   121   2356778777777777766542 3445555554

>PRK07890 short chain dehydrogenase; Provisional

Probab=97.34  E-value=0.0022  Score=57.03  Aligned_cols=117  Identities=15%  Similarity=0.132  Sum_probs=67.1

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HH-------h
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LE-------D  110 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~-------e  110 (289)
                      .+.++|.|+||+|.+|.+++..|+.+|.  +|+++|+++.  .....++....  .++..+. +.+|   ++       +
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~   78 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGA--DVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALE   78 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHH
Confidence            3456899999999999999999999998  8999998762  11222222111  1111111 1112   11       1


Q ss_pred             hhCCCCEEEEcCCCCCC--C--CCch---hhHHHhhHHHHHHHHHHHHHhC--CCcEEEEecC
Q 022947          111 ALTGMDIVIIPAGVPRK--P--GMTR---DDLFNINAGIVKTLCEGIAKCC--PKAIVNLISN  164 (289)
Q Consensus       111 al~~aDiVIitag~~~~--~--g~~r---~d~~~~N~~i~~~i~~~i~~~~--p~aiviv~tN  164 (289)
                      .+...|+||+++|....  +  ..+.   .+.+..|+.....+.+.+.++-  ....++++|.
T Consensus        79 ~~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS  141 (258)
T PRK07890         79 RFGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINS  141 (258)
T ss_pred             HcCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence            23578999999986422  1  1122   2345666665555665555431  1245666554

>PRK07024 short chain dehydrogenase; Provisional

Probab=97.34  E-value=0.003  Score=56.41  Aligned_cols=35  Identities=34%  Similarity=0.341  Sum_probs=31.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      +++|.|+|++|.+|..++..|++.|.  +|+++|++.
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~--~v~~~~r~~   36 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGA--TLGLVARRT   36 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            35899999999999999999999997  899999875

>PRK05876 short chain dehydrogenase; Provisional

Probab=97.34  E-value=0.0045  Score=56.30  Aligned_cols=115  Identities=17%  Similarity=0.162  Sum_probs=65.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-c---CCCHHhh-------h
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-G---QQQLEDA-------L  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~---t~d~~ea-------l  112 (289)
                      .+.+.|+|++|.+|..++..|+..|.  +|++.|+++.  .....++....  .++..+. +   ..++.+.       +
T Consensus         6 ~k~vlVTGas~gIG~ala~~La~~G~--~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~   81 (275)
T PRK05876          6 GRGAVITGGASGIGLATGTEFARRGA--RVVLGDVDKPGLRQAVNHLRAEG--FDVHGVMCDVRHREEVTHLADEAFRLL   81 (275)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            45799999999999999999999997  8999998762  22222332211  1222111 1   1122222       2


Q ss_pred             CCCCEEEEcCCCCCCC---CCch---hhHHHhhHHHHH----HHHHHHHHhCCCcEEEEecC
Q 022947          113 TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVK----TLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       113 ~~aDiVIitag~~~~~---g~~r---~d~~~~N~~i~~----~i~~~i~~~~p~aiviv~tN  164 (289)
                      ...|++|.+||.....   ..+.   ...+..|+....    .+.+.+.+....+.+++++.
T Consensus        82 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS  143 (275)
T PRK05876         82 GHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTAS  143 (275)
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence            3579999999864211   1122   233556655444    44444444443456666654

>PLN02256 arogenate dehydrogenase

Probab=97.33  E-value=0.0019  Score=60.36  Aligned_cols=65  Identities=18%  Similarity=0.230  Sum_probs=45.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhh-CCCCEEEEcC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL-TGMDIVIIPA  122 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal-~~aDiVIita  122 (289)
                      +++||+|||+ |.+|..++..|...|.  +|+.+|.+.....+.++   .    +..   .++.++.+ .++|+||++.
T Consensus        35 ~~~kI~IIG~-G~mG~slA~~L~~~G~--~V~~~d~~~~~~~a~~~---g----v~~---~~~~~e~~~~~aDvVilav  100 (304)
T PLN02256         35 RKLKIGIVGF-GNFGQFLAKTFVKQGH--TVLATSRSDYSDIAAEL---G----VSF---FRDPDDFCEEHPDVVLLCT  100 (304)
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEECccHHHHHHHc---C----Cee---eCCHHHHhhCCCCEEEEec
Confidence            4569999998 9999999999988886  89999987522112211   1    111   13455555 4799999985

>PRK07576 short chain dehydrogenase; Provisional

Probab=97.33  E-value=0.0037  Score=56.27  Aligned_cols=117  Identities=18%  Similarity=0.179  Sum_probs=65.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEE----ecCCCHHhhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGF----LGQQQLEDAL-------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~----~~t~d~~eal-------  112 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|++..  .....++....  .++..+    ...+++.+.+       
T Consensus         9 ~k~ilItGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~~   84 (264)
T PRK07576          9 GKNVVVVGGTSGINLGIAQAFARAGA--NVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADEF   84 (264)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999997  8999998752  11222222211  111111    1111222222       


Q ss_pred             CCCCEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHh--CCCcEEEEecCCC
Q 022947          113 TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIAKC--CPKAIVNLISNPV  166 (289)
Q Consensus       113 ~~aDiVIitag~~~~~---g~~r---~d~~~~N~~i~~~i~~~i~~~--~p~aiviv~tNPv  166 (289)
                      ...|++|.++|.....   ..+.   .+.+..|+.....+.+.+...  .+++.|+++|.+.
T Consensus        85 ~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~  146 (264)
T PRK07576         85 GPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQ  146 (264)
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChh
Confidence            4579999998753211   1111   223456665555555444332  1346777776643

>PRK06841 short chain dehydrogenase; Provisional

Probab=97.32  E-value=0.0027  Score=56.33  Aligned_cols=113  Identities=21%  Similarity=0.300  Sum_probs=64.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcccCCceEEEE-ecCCC---HHhh-------hC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGF-LGQQQ---LEDA-------LT  113 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~~~~~~v~~~-~~t~d---~~ea-------l~  113 (289)
                      .++|.|+||+|.+|..++..|++.|.  +|++++++.. .....++..    ..+..+ .+..+   +++.       +.
T Consensus        15 ~k~vlItGas~~IG~~la~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   88 (255)
T PRK06841         15 GKVAVVTGGASGIGHAIAELFAAKGA--RVALLDRSEDVAEVAAQLLG----GNAKGLVCDVSDSQSVEAAVAAVISAFG   88 (255)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhhC----CceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            35899999999999999999999997  8999998762 111122211    111111 01111   2122       24


Q ss_pred             CCCEEEEcCCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 022947          114 GMDIVIIPAGVPRKPG---MTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (289)
Q Consensus       114 ~aDiVIitag~~~~~g---~~r---~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tN  164 (289)
                      ..|+||+++|......   .+.   ...+..|+.....+.+.+..+   ...+.++++|.
T Consensus        89 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  148 (255)
T PRK06841         89 RIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLAS  148 (255)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence            6799999998643211   111   224566766655555555443   22455665553

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=97.32  E-value=0.0026  Score=58.66  Aligned_cols=68  Identities=24%  Similarity=0.250  Sum_probs=43.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHH--hhhhcccCCceEEEEecCCCHHhhhCCCCEEEEc
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVT--ADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~--~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIit  121 (289)
                      ..++|+|+|. |.+|.+++..|...|+...++-+|.+.. ...+  +++.+..    .     .+...++.++||+||++
T Consensus         2 ~~~~v~IvG~-GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~----~-----~~~~~~~~~~aD~Viva   71 (279)
T COG0287           2 ASMKVGIVGL-GLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDEL----T-----VAGLAEAAAEADLVIVA   71 (279)
T ss_pred             CCcEEEEECC-chHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCccccc----c-----cchhhhhcccCCEEEEe
Confidence            3579999998 9999999999999998444444444331 1111  2222211    0     11124778999999998


Q ss_pred             C
Q 022947          122 A  122 (289)
Q Consensus       122 a  122 (289)
                      .
T Consensus        72 v   72 (279)
T COG0287          72 V   72 (279)
T ss_pred             c
Confidence            5

>PRK12367 short chain dehydrogenase; Provisional

Probab=97.32  E-value=0.008  Score=54.01  Aligned_cols=100  Identities=16%  Similarity=0.229  Sum_probs=59.8

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEE-EEecCCCHHhhhCCCCEEEEcCCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~-~~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      +++.|+||+|.+|..++..|+..|.  +|+++|+++....... .+.. ...+. ......+..+.+...|++|.+||..
T Consensus        15 k~~lITGas~gIG~ala~~l~~~G~--~Vi~~~r~~~~~~~~~-~~~~-~~~~~~D~~~~~~~~~~~~~iDilVnnAG~~   90 (245)
T PRK12367         15 KRIGITGASGALGKALTKAFRAKGA--KVIGLTHSKINNSESN-DESP-NEWIKWECGKEESLDKQLASLDVLILNHGIN   90 (245)
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEECCchhhhhhh-ccCC-CeEEEeeCCCHHHHHHhcCCCCEEEECCccC
Confidence            5899999999999999999999997  8999998751111110 1110 11111 1111123445677899999999874


Q ss_pred             CCCCCc---hhhHHHhhHHHHHHHHHHH
Q 022947          126 RKPGMT---RDDLFNINAGIVKTLCEGI  150 (289)
Q Consensus       126 ~~~g~~---r~d~~~~N~~i~~~i~~~i  150 (289)
                      .....+   -.+.+..|+.....+++.+
T Consensus        91 ~~~~~~~~~~~~~~~vN~~g~~~l~~~~  118 (245)
T PRK12367         91 PGGRQDPENINKALEINALSSWRLLELF  118 (245)
T ss_pred             CcCCCCHHHHHHHHHHHhHHHHHHHHHH
Confidence            322222   2345666765544444443

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.32  E-value=0.0016  Score=59.86  Aligned_cols=68  Identities=13%  Similarity=0.152  Sum_probs=46.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCC--ccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~--~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      .+||++||+ |.+|++++..|+..++  ..+|+.+|+++..  ...+....   .+..   .++..+.+++||+||++.
T Consensus         2 ~~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~--~~~l~~~~---g~~~---~~~~~e~~~~aDiIiLav   71 (272)
T PRK12491          2 NKQIGFIGC-GNMGIAMIGGMINKNIVSPDQIICSDLNVSN--LKNASDKY---GITI---TTNNNEVANSADILILSI   71 (272)
T ss_pred             CCeEEEECc-cHHHHHHHHHHHHCCCCCCceEEEECCCHHH--HHHHHHhc---CcEE---eCCcHHHHhhCCEEEEEe
Confidence            358999998 9999999999988874  3579999886521  22222211   1222   124457789999999985

>PRK08219 short chain dehydrogenase; Provisional

Probab=97.31  E-value=0.0019  Score=56.10  Aligned_cols=75  Identities=19%  Similarity=0.206  Sum_probs=46.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEE--EecCCCHHhhhC---CCCEEEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG--FLGQQQLEDALT---GMDIVII  120 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~--~~~t~d~~eal~---~aDiVIi  120 (289)
                      ++++.|+|++|++|..++..|+++ .  +|+++|++...  ..++.+......+..  .....+++++++   +.|+||+
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~~-~--~V~~~~r~~~~--~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~   77 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAPT-H--TLLLGGRPAER--LDELAAELPGATPFPVDLTDPEAIAAAVEQLGRLDVLVH   77 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHhh-C--CEEEEeCCHHH--HHHHHHHhccceEEecCCCCHHHHHHHHHhcCCCCEEEE
Confidence            468999999999999999988877 5  89999986521  112221110011110  111123344444   6999999


Q ss_pred             cCCCC
Q 022947          121 PAGVP  125 (289)
Q Consensus       121 tag~~  125 (289)
                      ++|..
T Consensus        78 ~ag~~   82 (227)
T PRK08219         78 NAGVA   82 (227)
T ss_pred             CCCcC
Confidence            99864

>PRK07814 short chain dehydrogenase; Provisional

Probab=97.30  E-value=0.0088  Score=53.69  Aligned_cols=116  Identities=16%  Similarity=0.146  Sum_probs=66.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCCH---Hhh-------
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL---EDA-------  111 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~---~ea-------  111 (289)
                      +.+++.|+|++|.+|.+++..|+.+|.  +|+++|++..  .....++....  ..+..+. +-++.   .++       
T Consensus         9 ~~~~vlItGasggIG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   84 (263)
T PRK07814          9 DDQVAVVTGAGRGLGAAIALAFAEAGA--DVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEA   84 (263)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999997  9999998752  12222222211  1222111 11222   111       


Q ss_pred             hCCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHH----HhCCCcEEEEecC
Q 022947          112 LTGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIA----KCCPKAIVNLISN  164 (289)
Q Consensus       112 l~~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~----~~~p~aiviv~tN  164 (289)
                      +...|+||.+||.....   ..+   -.+.+..|+.....+.+.+.    +..+.+.+++++.
T Consensus        85 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS  147 (263)
T PRK07814         85 FGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISS  147 (263)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEcc
Confidence            24789999999853221   111   22345556555555444443    3345566666665

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=97.29  E-value=0.0016  Score=61.52  Aligned_cols=92  Identities=16%  Similarity=0.199  Sum_probs=60.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      ..++|+|||. |.+|+.+|..|...|.  +|+.+|++....  .+.        +.   ...++++.+++||+|+++...
T Consensus       145 ~g~~VgIIG~-G~IG~~vA~~L~~~G~--~V~~~d~~~~~~--~~~--------~~---~~~~l~ell~~aDiVil~lP~  208 (330)
T PRK12480        145 KNMTVAIIGT-GRIGAATAKIYAGFGA--TITAYDAYPNKD--LDF--------LT---YKDSVKEAIKDADIISLHVPA  208 (330)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCChhHh--hhh--------hh---ccCCHHHHHhcCCEEEEeCCC
Confidence            3458999998 9999999999988887  999999865210  110        11   123578899999999998532


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCC
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNP  165 (289)
                      .  +         .+...+.  .+.+....|++++|+++--
T Consensus       209 t--~---------~t~~li~--~~~l~~mk~gavlIN~aRG  236 (330)
T PRK12480        209 N--K---------ESYHLFD--KAMFDHVKKGAILVNAARG  236 (330)
T ss_pred             c--H---------HHHHHHh--HHHHhcCCCCcEEEEcCCc
Confidence            1  1         1112221  1233333578899888643

>PRK07063 short chain dehydrogenase; Provisional

Probab=97.29  E-value=0.0078  Score=53.72  Aligned_cols=116  Identities=21%  Similarity=0.227  Sum_probs=64.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCC---CHHhhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQ---QLEDAL-------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~---d~~eal-------  112 (289)
                      .+++.|+|++|.+|..++..|+..|.  +|+++|+++.  .....++.......++..+. +-+   ++.+.+       
T Consensus         7 ~k~vlVtGas~gIG~~~a~~l~~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (260)
T PRK07063          7 GKVALVTGAAQGIGAAIARAFAREGA--AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF   84 (260)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            45799999999999999999999997  8999998762  22223333210111222111 111   222222       


Q ss_pred             CCCCEEEEcCCCCCCC--C-Cc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecC
Q 022947          113 TGMDIVIIPAGVPRKP--G-MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       113 ~~aDiVIitag~~~~~--g-~~---r~d~~~~N~~i~----~~i~~~i~~~~p~aiviv~tN  164 (289)
                      ...|++|.++|.....  . .+   -...+..|+...    +...+.+.+. ..+.|+++|.
T Consensus        85 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~isS  145 (260)
T PRK07063         85 GPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVER-GRGSIVNIAS  145 (260)
T ss_pred             CCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-CCeEEEEECC
Confidence            4689999999864211  1 11   122344555544    4444444433 3456666654

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=97.29  E-value=0.0028  Score=58.00  Aligned_cols=119  Identities=16%  Similarity=0.170  Sum_probs=75.5

Q ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCceEEEE----ecCCCHHh------
Q 022947           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGF----LGQQQLED------  110 (289)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~----~~t~d~~e------  110 (289)
                      .++++++.|+|||+-+|..+|..|+.+|+  +|+|+.+++  +...+.+|.+.. ...+..+    +..++.+.      
T Consensus         3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~--~liLvaR~~~kL~~la~~l~~~~-~v~v~vi~~DLs~~~~~~~l~~~l~   79 (265)
T COG0300           3 PMKGKTALITGASSGIGAELAKQLARRGY--NLILVARREDKLEALAKELEDKT-GVEVEVIPADLSDPEALERLEDELK   79 (265)
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHHHhh-CceEEEEECcCCChhHHHHHHHHHH
Confidence            45677999999999999999999999998  999999987  344555666532 1122221    11122211      


Q ss_pred             -hhCCCCEEEEcCCCCCCC------CCchhhHHHhhHHHHH----HHHHHHHHhCCCcEEEEecCC
Q 022947          111 -ALTGMDIVIIPAGVPRKP------GMTRDDLFNINAGIVK----TLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       111 -al~~aDiVIitag~~~~~------g~~r~d~~~~N~~i~~----~i~~~i~~~~p~aiviv~tNP  165 (289)
                       .....|+.|..||...-.      -++-.+++.-|+-.+.    .+.+.|.+. -.+-||+++.-
T Consensus        80 ~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~-~~G~IiNI~S~  144 (265)
T COG0300          80 ERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVER-GAGHIINIGSA  144 (265)
T ss_pred             hcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEech
Confidence             112689999999975322      1123457777765554    445555543 35667777543

>PRK05993 short chain dehydrogenase; Provisional

Probab=97.28  E-value=0.0021  Score=58.28  Aligned_cols=113  Identities=10%  Similarity=0.060  Sum_probs=64.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEE-EEecCCCHHhhh--------CCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLEDAL--------TGMD  116 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~-~~~~t~d~~eal--------~~aD  116 (289)
                      +++|.|+||+|.+|..++..|+..|.  +|++.++++...  .++..... ..+. ......++++++        ...|
T Consensus         4 ~k~vlItGasggiG~~la~~l~~~G~--~Vi~~~r~~~~~--~~l~~~~~-~~~~~Dl~d~~~~~~~~~~~~~~~~g~id   78 (277)
T PRK05993          4 KRSILITGCSSGIGAYCARALQSDGW--RVFATCRKEEDV--AALEAEGL-EAFQLDYAEPESIAALVAQVLELSGGRLD   78 (277)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHHCCc-eEEEccCCCHHHHHHHHHHHHHHcCCCcc
Confidence            35799999999999999999999997  899999875211  11211110 0011 011111121222        2579


Q ss_pred             EEEEcCCCCCCC---CCc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 022947          117 IVIIPAGVPRKP---GMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       117 iVIitag~~~~~---g~~---r~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      ++|.+||.....   ..+   -.+.+..|+..    .+.+.+.+++.. .+.|+++|.
T Consensus        79 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~-~g~iv~isS  135 (277)
T PRK05993         79 ALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQG-QGRIVQCSS  135 (277)
T ss_pred             EEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcC-CCEEEEECC
Confidence            999999864321   111   12345667655    566666666544 345555554

>PRK06181 short chain dehydrogenase; Provisional

Probab=97.27  E-value=0.0055  Score=54.70  Aligned_cols=115  Identities=17%  Similarity=0.174  Sum_probs=65.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh-------C
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------T  113 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal-------~  113 (289)
                      ++|.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++....  ..+..+. +-.|   +.+++       .
T Consensus         2 ~~vlVtGasg~iG~~la~~l~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   77 (263)
T PRK06181          2 KVVIITGASEGIGRALAVRLARAGA--QLVLAARNETRLASLAQELADHG--GEALVVPTDVSDAEACERLIEAAVARFG   77 (263)
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999998887  8999998752  11222332221  1222211 1112   22222       3


Q ss_pred             CCCEEEEcCCCCCCCC---C-ch---hhHHHhhHHHHHHHHHHHHHhC--CCcEEEEecCC
Q 022947          114 GMDIVIIPAGVPRKPG---M-TR---DDLFNINAGIVKTLCEGIAKCC--PKAIVNLISNP  165 (289)
Q Consensus       114 ~aDiVIitag~~~~~g---~-~r---~d~~~~N~~i~~~i~~~i~~~~--p~aiviv~tNP  165 (289)
                      +.|+||.++|......   . +.   .+.+..|+.....+.+.+.++.  ..+.++++|..
T Consensus        78 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~  138 (263)
T PRK06181         78 GIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSL  138 (263)
T ss_pred             CCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecc
Confidence            6899999998643211   1 11   2235666666555555554321  23455555543

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=97.27  E-value=0.0029  Score=56.73  Aligned_cols=35  Identities=23%  Similarity=0.291  Sum_probs=31.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++
T Consensus         5 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~   39 (262)
T TIGR03325         5 GEVVLVTGGASGLGRAIVDRFVAEGA--RVAVLDKSA   39 (262)
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            46899999999999999999999997  899999865

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.27  E-value=0.0033  Score=55.17  Aligned_cols=34  Identities=29%  Similarity=0.407  Sum_probs=31.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV   81 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~   81 (289)
                      ..||+|+|+ |.+|+.++..|+..|+ .+|+|+|.+
T Consensus        21 ~~~V~IvG~-GglGs~ia~~La~~Gv-g~i~lvD~D   54 (200)
T TIGR02354        21 QATVAICGL-GGLGSNVAINLARAGI-GKLILVDFD   54 (200)
T ss_pred             CCcEEEECc-CHHHHHHHHHHHHcCC-CEEEEECCC
Confidence            458999999 9999999999999996 589999998

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=97.26  E-value=0.0048  Score=55.07  Aligned_cols=115  Identities=17%  Similarity=0.156  Sum_probs=67.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--hHHhhhhcccCCceEEEEe-cCCC---HHhh-------h
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFL-GQQQ---LEDA-------L  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------l  112 (289)
                      .++|.|+|++|.+|++++..|+..|.  +|+++|.+...  ....++...  ..++..+. +-+|   +.+.       +
T Consensus        12 ~k~ilItGa~g~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~--~~~~~~~~~Dl~d~~~i~~~~~~~~~~~   87 (259)
T PRK08213         12 GKTALVTGGSRGLGLQIAEALGEAGA--RVVLSARKAEELEEAAAHLEAL--GIDALWIAADVADEADIERLAEETLERF   87 (259)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            35899999999999999999999997  89999986521  111122211  11211111 1112   2111       2


Q ss_pred             CCCCEEEEcCCCCCCCC---C---chhhHHHhhHHHHHHHHHHHHHh----CCCcEEEEecC
Q 022947          113 TGMDIVIIPAGVPRKPG---M---TRDDLFNINAGIVKTLCEGIAKC----CPKAIVNLISN  164 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g---~---~r~d~~~~N~~i~~~i~~~i~~~----~p~aiviv~tN  164 (289)
                      ...|.||+++|......   .   .-.+.+..|+.....+.+.+.++    .+.+.++++|.
T Consensus        88 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS  149 (259)
T PRK08213         88 GHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVAS  149 (259)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence            46899999998632111   1   12234667877777777766544    23456666554

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=97.25  E-value=0.0033  Score=55.37  Aligned_cols=115  Identities=20%  Similarity=0.264  Sum_probs=65.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEec----CCCHHhhh------
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG----QQQLEDAL------  112 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~~----t~d~~eal------  112 (289)
                      +.++|.|+||+|++|..++..|+.+|.  +|++++++..  .....++....  ..+..+..    ..++++.+      
T Consensus         5 ~~~~ilItGasg~iG~~l~~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   80 (251)
T PRK12826          5 EGRVALVTGAARGIGRAIAVRLAADGA--EVIVVDICGDDAAATAELVEAAG--GKARARQVDVRDRAALKAAVAAGVED   80 (251)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999997  8999998752  11222222211  12222211    11222222      


Q ss_pred             -CCCCEEEEcCCCCCC-C--CCch---hhHHHhhHHHHHHHHHHH----HHhCCCcEEEEecC
Q 022947          113 -TGMDIVIIPAGVPRK-P--GMTR---DDLFNINAGIVKTLCEGI----AKCCPKAIVNLISN  164 (289)
Q Consensus       113 -~~aDiVIitag~~~~-~--g~~r---~d~~~~N~~i~~~i~~~i----~~~~p~aiviv~tN  164 (289)
                       ...|+||+++|.... +  ..+.   .+.+..|+.....+.+.+    .+.. ...++++|.
T Consensus        81 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~ii~~ss  142 (251)
T PRK12826         81 FGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAG-GGRIVLTSS  142 (251)
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEEec
Confidence             378999999876432 1  1122   234556666555555444    3333 344555443

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=97.25  E-value=0.0065  Score=54.35  Aligned_cols=34  Identities=18%  Similarity=0.142  Sum_probs=31.4

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      |++.|+|++|.+|..++..|+..|.  +|++.|+++
T Consensus         1 m~vlItGas~gIG~aia~~l~~~G~--~V~~~~r~~   34 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKKGA--RVVISSRNE   34 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHcCC--EEEEEeCCH
Confidence            5899999999999999999999997  899999876

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.24  E-value=0.014  Score=51.76  Aligned_cols=34  Identities=24%  Similarity=0.235  Sum_probs=30.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      ++|.|+|++|++|+.++..|+..|.  +|+++|...
T Consensus         3 k~vlItG~sg~iG~~la~~L~~~g~--~vi~~~r~~   36 (256)
T PRK12745          3 PVALVTGGRRGIGLGIARALAAAGF--DLAINDRPD   36 (256)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecCc
Confidence            4789999999999999999999997  899999754

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.24  E-value=0.0019  Score=61.25  Aligned_cols=97  Identities=25%  Similarity=0.276  Sum_probs=63.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--hHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      ..++|.|+||+|++|+.++..|....-..+|+++++++..  ....++...    .      ..++++++.++|+||.++
T Consensus       154 ~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~----~------i~~l~~~l~~aDiVv~~t  223 (340)
T PRK14982        154 SKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGG----K------ILSLEEALPEADIVVWVA  223 (340)
T ss_pred             CCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccc----c------HHhHHHHHccCCEEEECC
Confidence            4568999999999999999988754224589999886521  111222111    1      124668899999999998


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCccc
Q 022947          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNST  169 (289)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~  169 (289)
                      +.+...--+..++                  .+..+++=++-|=|+-
T Consensus       224 s~~~~~~I~~~~l------------------~~~~~viDiAvPRDVd  252 (340)
T PRK14982        224 SMPKGVEIDPETL------------------KKPCLMIDGGYPKNLD  252 (340)
T ss_pred             cCCcCCcCCHHHh------------------CCCeEEEEecCCCCCC
Confidence            8764211111111                  3567777778887775

>PRK12827 short chain dehydrogenase; Provisional

Probab=97.24  E-value=0.01  Score=52.04  Aligned_cols=102  Identities=19%  Similarity=0.323  Sum_probs=60.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHH----hhhhcccCCceEEEEe-cCCC---HHhhh---
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVT----ADISHMDTNAVVRGFL-GQQQ---LEDAL---  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~----~DL~~~~~~~~v~~~~-~t~d---~~eal---  112 (289)
                      .++|.|+||+|.+|..++..|+.+|.  ++++++....  ....    .++...  ...+..+. +-.+   +++.+   
T Consensus         6 ~~~ilItGasg~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~   81 (249)
T PRK12827          6 SRRVLITGGSGGLGRAIAVRLAADGA--DVIVLDIHPMRGRAEADAVAAGIEAA--GGKALGLAFDVRDFAATRAALDAG   81 (249)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEcCcccccHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHH
Confidence            46899999999999999999999998  8999886431  1111    112111  11222111 1112   22222   


Q ss_pred             ----CCCCEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHHHH
Q 022947          113 ----TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIA  151 (289)
Q Consensus       113 ----~~aDiVIitag~~~~~---g~~r---~d~~~~N~~i~~~i~~~i~  151 (289)
                          ...|.||+++|.....   ..+.   ...+..|......+++.+.
T Consensus        82 ~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~  130 (249)
T PRK12827         82 VEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAAL  130 (249)
T ss_pred             HHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHH
Confidence                4689999999865321   1111   2345677777777777766

>PRK12939 short chain dehydrogenase; Provisional

Probab=97.23  E-value=0.011  Score=52.07  Aligned_cols=115  Identities=16%  Similarity=0.218  Sum_probs=66.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhh-------h
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------L  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------l  112 (289)
                      .++|.|+|++|.+|+.++..|+..|.  +|+++++++.  .....++....  .++..+. +..|   +++.       +
T Consensus         7 ~~~vlItGa~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   82 (250)
T PRK12939          7 GKRALVTGAARGLGAAFAEALAEAGA--TVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAAL   82 (250)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999999997  8999987652  22222332211  1222211 1112   1111       2


Q ss_pred             CCCCEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 022947          113 TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (289)
Q Consensus       113 ~~aDiVIitag~~~~~---g~~r---~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tN  164 (289)
                      .+.|+||.++|.....   ..+.   ...+..|......+.+.+.++   .+.+.++++|.
T Consensus        83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS  143 (250)
T PRK12939         83 GGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLAS  143 (250)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECc
Confidence            5789999999864321   1111   223455666555555554432   23456666554

>PRK06179 short chain dehydrogenase; Provisional

Probab=97.23  E-value=0.0028  Score=56.90  Aligned_cols=111  Identities=16%  Similarity=0.156  Sum_probs=62.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEE-EEecCCCHHhhh-------CCCCE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLEDAL-------TGMDI  117 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~-~~~~t~d~~eal-------~~aDi  117 (289)
                      .++|.|+||+|.+|.+++..|+.+|.  +|++.+++......  ....   ..+. ......++++++       ...|+
T Consensus         4 ~~~vlVtGasg~iG~~~a~~l~~~g~--~V~~~~r~~~~~~~--~~~~---~~~~~D~~d~~~~~~~~~~~~~~~g~~d~   76 (270)
T PRK06179          4 SKVALVTGASSGIGRATAEKLARAGY--RVFGTSRNPARAAP--IPGV---ELLELDVTDDASVQAAVDEVIARAGRIDV   76 (270)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCChhhccc--cCCC---eeEEeecCCHHHHHHHHHHHHHhCCCCCE
Confidence            35799999999999999999999997  89999987521110  0000   0001 111112233333       35799


Q ss_pred             EEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHH----HHHHhCCCcEEEEecC
Q 022947          118 VIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCE----GIAKCCPKAIVNLISN  164 (289)
Q Consensus       118 VIitag~~~~~g---~~---r~d~~~~N~~i~~~i~~----~i~~~~p~aiviv~tN  164 (289)
                      +|.++|......   .+   -.+.+..|......+.+    .+++.. .+.|+++|.
T Consensus        77 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~~~iv~isS  132 (270)
T PRK06179         77 LVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQG-SGRIINISS  132 (270)
T ss_pred             EEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEECC
Confidence            999998753221   11   13345556544444444    444443 345555554

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=97.23  E-value=0.0015  Score=60.53  Aligned_cols=91  Identities=15%  Similarity=0.245  Sum_probs=57.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCC---CCEEEEcCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTG---MDIVIIPAG  123 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~---aDiVIitag  123 (289)
                      |||+|||. |.+|+.++..|...++  +|+++|+++..  ..++.+..    ...   ..++++.+++   +|+||++..
T Consensus         1 m~Ig~IGl-G~mG~~mA~~L~~~g~--~v~v~dr~~~~--~~~~~~~g----~~~---~~s~~~~~~~~~~advVi~~vp   68 (299)
T PRK12490          1 MKLGLIGL-GKMGGNMAERLREDGH--EVVGYDVNQEA--VDVAGKLG----ITA---RHSLEELVSKLEAPRTIWVMVP   68 (299)
T ss_pred             CEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHH--HHHHHHCC----Cee---cCCHHHHHHhCCCCCEEEEEec
Confidence            58999998 9999999999999887  89999987522  12222211    111   2355566655   699999842


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecC
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISN  164 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~-~p~aiviv~tN  164 (289)
                      ..               +.++++++.+... .|+.++|..|+
T Consensus        69 ~~---------------~~~~~v~~~i~~~l~~g~ivid~st   95 (299)
T PRK12490         69 AG---------------EVTESVIKDLYPLLSPGDIVVDGGN   95 (299)
T ss_pred             Cc---------------hHHHHHHHHHhccCCCCCEEEECCC
Confidence            11               2334444445443 36677777643

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=97.22  E-value=0.0024  Score=58.01  Aligned_cols=90  Identities=14%  Similarity=0.185  Sum_probs=58.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCc--cEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~--~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      .|||+|||+ |.+|++++..|...+..  .+++.+|.++..     +       ....   ..+..+.++++|+||++. 
T Consensus         3 ~mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~-----~-------~~~~---~~~~~~~~~~~D~Vilav-   65 (260)
T PTZ00431          3 NIRVGFIGL-GKMGSALAYGIENSNIIGKENIYYHTPSKKN-----T-------PFVY---LQSNEELAKTCDIIVLAV-   65 (260)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHhCCCCCcceEEEECCChhc-----C-------CeEE---eCChHHHHHhCCEEEEEe-
Confidence            479999998 99999999999887643  358888875421     0       0111   124456788999999984 


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd  167 (289)
                       +              -..+.++++.+..+-++..++.+.+-+.
T Consensus        66 -k--------------p~~~~~vl~~i~~~l~~~~iIS~~aGi~   94 (260)
T PTZ00431         66 -K--------------PDLAGKVLLEIKPYLGSKLLISICGGLN   94 (260)
T ss_pred             -C--------------HHHHHHHHHHHHhhccCCEEEEEeCCcc
Confidence             1              1234555556655433345666666665

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=97.21  E-value=0.0057  Score=56.94  Aligned_cols=117  Identities=15%  Similarity=0.114  Sum_probs=70.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHH----hhhhcccCCceEEEEecCCCHHhhhCCCCEEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVT----ADISHMDTNAVVRGFLGQQQLEDALTGMDIVI  119 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~----~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVI  119 (289)
                      .|||+|+|+ |.||+.++..|...|.  +|.++++..  .+...    +.+........+...  ..+ .+.....|+||
T Consensus         2 ~m~I~IiGa-GaiG~~~a~~L~~~G~--~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~--~~~-~~~~~~~D~vi   75 (305)
T PRK05708          2 SMTWHILGA-GSLGSLWACRLARAGL--PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIP--AET-ADAAEPIHRLL   75 (305)
T ss_pred             CceEEEECC-CHHHHHHHHHHHhCCC--CeEEEEechHHHHHHhhcCCeEEeeCCcceeeccC--CCC-cccccccCEEE
Confidence            479999999 9999999999998887  899999853  11000    001100000011110  111 13356889999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022947          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (289)
Q Consensus       120 itag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~-~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~  191 (289)
                      +|.-.               . -..+.++.++.+ .+++.++.+-|=++....     +++.  ++.+++++-
T Consensus        76 v~vK~---------------~-~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~-----l~~~--~~~~~v~~g  125 (305)
T PRK05708         76 LACKA---------------Y-DAEPAVASLAHRLAPGAELLLLQNGLGSQDA-----VAAR--VPHARCIFA  125 (305)
T ss_pred             EECCH---------------H-hHHHHHHHHHhhCCCCCEEEEEeCCCCCHHH-----HHHh--CCCCcEEEE
Confidence            98521               1 133445556654 388989889999887542     3332  667777754

>PRK12742 oxidoreductase; Provisional

Probab=97.21  E-value=0.0062  Score=53.36  Aligned_cols=147  Identities=16%  Similarity=0.152  Sum_probs=74.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCC---HHhh---hCCCCEEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ---LEDA---LTGMDIVI  119 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d---~~ea---l~~aDiVI  119 (289)
                      .++|.|+||+|.||..++..|+..|.  +|++.+..... ...++.... ....... +.+|   +.+.   ....|++|
T Consensus         6 ~k~vlItGasggIG~~~a~~l~~~G~--~v~~~~~~~~~-~~~~l~~~~-~~~~~~~-D~~~~~~~~~~~~~~~~id~li   80 (237)
T PRK12742          6 GKKVLVLGGSRGIGAAIVRRFVTDGA--NVRFTYAGSKD-AAERLAQET-GATAVQT-DSADRDAVIDVVRKSGALDILV   80 (237)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCCHH-HHHHHHHHh-CCeEEec-CCCCHHHHHHHHHHhCCCcEEE
Confidence            45899999999999999999999987  78877653311 111111100 0111100 1112   2122   34589999


Q ss_pred             EcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEee
Q 022947          120 IPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT  192 (289)
Q Consensus       120 itag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~-~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t  192 (289)
                      .++|......   .+   -...+..|+.....++..+.+. .+.+.+++++.-....           ...+....++.+
T Consensus        81 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~-----------~~~~~~~~Y~~s  149 (237)
T PRK12742         81 VNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGDR-----------MPVAGMAAYAAS  149 (237)
T ss_pred             ECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEecccccc-----------CCCCCCcchHHh
Confidence            9998643211   11   1234555655444443333332 2345566555422110           012333445554


Q ss_pred             eccHHHHHHHHHHHcC
Q 022947          193 MLDVVRANTFVAEVLG  208 (289)
Q Consensus       193 ~lds~R~~~~lA~~l~  208 (289)
                      ......+-+.++++++
T Consensus       150 Kaa~~~~~~~la~~~~  165 (237)
T PRK12742        150 KSALQGMARGLARDFG  165 (237)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            4333445566777764

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=97.21  E-value=0.0025  Score=58.94  Aligned_cols=66  Identities=18%  Similarity=0.247  Sum_probs=49.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      +||++||. |.+|+.+|..|...|+  ++..+|+++.+. +..+.....  .  .   ..+..++.+++|+||.+..
T Consensus         1 ~kIafIGL-G~MG~pmA~~L~~aG~--~v~v~~r~~~ka-~~~~~~~Ga--~--~---a~s~~eaa~~aDvVitmv~   66 (286)
T COG2084           1 MKIAFIGL-GIMGSPMAANLLKAGH--EVTVYNRTPEKA-AELLAAAGA--T--V---AASPAEAAAEADVVITMLP   66 (286)
T ss_pred             CeEEEEcC-chhhHHHHHHHHHCCC--EEEEEeCChhhh-hHHHHHcCC--c--c---cCCHHHHHHhCCEEEEecC
Confidence            58999998 9999999999999999  999999986332 222222111  1  1   1245789999999999853

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=97.20  E-value=0.002  Score=57.58  Aligned_cols=71  Identities=21%  Similarity=0.222  Sum_probs=46.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch-hHHhhhhcccCCceEEEEecC--CCHHhh-hCCCCEEEEcC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGFLGQ--QQLEDA-LTGMDIVIIPA  122 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~-g~~~DL~~~~~~~~v~~~~~t--~d~~ea-l~~aDiVIita  122 (289)
                      |+|+|+|+ |.+|+++|..|...|+  +|+++|.++.. ....  .+.. ...+.....+  .-++++ +.++|++|.+-
T Consensus         1 m~iiIiG~-G~vG~~va~~L~~~g~--~Vv~Id~d~~~~~~~~--~~~~-~~~~v~gd~t~~~~L~~agi~~aD~vva~t   74 (225)
T COG0569           1 MKIIIIGA-GRVGRSVARELSEEGH--NVVLIDRDEERVEEFL--ADEL-DTHVVIGDATDEDVLEEAGIDDADAVVAAT   74 (225)
T ss_pred             CEEEEECC-cHHHHHHHHHHHhCCC--ceEEEEcCHHHHHHHh--hhhc-ceEEEEecCCCHHHHHhcCCCcCCEEEEee
Confidence            68999999 9999999999999998  99999998721 1111  1100 1111111111  123344 68999999875


Q ss_pred             C
Q 022947          123 G  123 (289)
Q Consensus       123 g  123 (289)
                      |
T Consensus        75 ~   75 (225)
T COG0569          75 G   75 (225)
T ss_pred             C
Confidence            4

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=97.20  E-value=0.0026  Score=55.67  Aligned_cols=35  Identities=29%  Similarity=0.481  Sum_probs=31.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      +++|.|+||+|.+|..++..|+.+|+  +|+++++++
T Consensus         5 ~~~ilItGasg~iG~~l~~~l~~~g~--~v~~~~r~~   39 (246)
T PRK05653          5 GKTALVTGASRGIGRAIALRLAADGA--KVVIYDSNE   39 (246)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            35899999999999999999999998  799999876

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=97.20  E-value=0.0054  Score=54.19  Aligned_cols=34  Identities=26%  Similarity=0.324  Sum_probs=31.1

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      ++|.|+|++|++|+.++..|+.+|.  +|++++++.
T Consensus         2 ~~vlItGa~g~lG~~l~~~l~~~g~--~v~~~~r~~   35 (255)
T TIGR01963         2 KTALVTGAASGIGLAIALALAAAGA--NVVVNDLGE   35 (255)
T ss_pred             CEEEEcCCcchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4799999999999999999999998  899999876

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK06500 short chain dehydrogenase; Provisional

Probab=97.19  E-value=0.0059  Score=53.80  Aligned_cols=101  Identities=19%  Similarity=0.198  Sum_probs=61.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCCH----------Hhhh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL----------EDAL  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~----------~eal  112 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|+++++++.  .....++.     .++..+. +..|.          .+.+
T Consensus         6 ~k~vlItGasg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (249)
T PRK06500          6 GKTALITGGTSGIGLETARQFLAEGA--RVAITGRDPASLEAARAELG-----ESALVIRADAGDVAAQKALAQALAEAF   78 (249)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHhC-----CceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            35899999999999999999999997  8999988752  11111111     1111110 11121          1223


Q ss_pred             CCCCEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHh
Q 022947          113 TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIAKC  153 (289)
Q Consensus       113 ~~aDiVIitag~~~~~---g~~r---~d~~~~N~~i~~~i~~~i~~~  153 (289)
                      ...|+||+++|.....   ..+.   ...+..|+.....+.+.+.++
T Consensus        79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~  125 (249)
T PRK06500         79 GRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPL  125 (249)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            5789999999864321   1111   235667777777777776653

>PRK12746 short chain dehydrogenase; Provisional

Probab=97.19  E-value=0.017  Score=51.26  Aligned_cols=115  Identities=18%  Similarity=0.189  Sum_probs=63.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEe-CCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYD-VVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD-~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal------  112 (289)
                      .++|.|+|++|.+|+.++..|+.+|.  ++++.+ ++..  .....++....  ..+..+. +-.|   +.+++      
T Consensus         6 ~~~ilItGasg~iG~~la~~l~~~G~--~v~i~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~i~~~~~~~~~~   81 (254)
T PRK12746          6 GKVALVTGASRGIGRAIAMRLANDGA--LVAIHYGRNKQAADETIREIESNG--GKAFLIEADLNSIDGVKKLVEQLKNE   81 (254)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCcCCHHHHHHHHHHHHHH
Confidence            35899999999999999999999987  776653 4331  11111222111  1121111 1112   22222      


Q ss_pred             -------CCCCEEEEcCCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 022947          113 -------TGMDIVIIPAGVPRKPG---MTR---DDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (289)
Q Consensus       113 -------~~aDiVIitag~~~~~g---~~r---~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tN  164 (289)
                             .+.|+||+++|......   .+.   ...+..|+.....+.+.+.++. ..+.++++|.
T Consensus        82 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS  147 (254)
T PRK12746         82 LQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISS  147 (254)
T ss_pred             hccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence                   26899999998643211   111   2345567776666666666543 2345555543

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=97.19  E-value=0.0022  Score=63.31  Aligned_cols=97  Identities=18%  Similarity=0.208  Sum_probs=64.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccC--CceEEEEecCCCHHhhhC---CCCEEEEc
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--NAVVRGFLGQQQLEDALT---GMDIVIIP  121 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~--~~~v~~~~~t~d~~eal~---~aDiVIit  121 (289)
                      .+|+|||. |.+|+++|..|+..|+  +|.++|+++..  +.++.....  ...+..   +.++++.++   ++|+||++
T Consensus         2 ~~IgvIGL-G~MG~~lA~nL~~~G~--~V~v~dr~~~~--~~~l~~~~~~~g~~i~~---~~s~~e~v~~l~~~d~Iil~   73 (470)
T PTZ00142          2 SDIGLIGL-AVMGQNLALNIASRGF--KISVYNRTYEK--TEEFVKKAKEGNTRVKG---YHTLEELVNSLKKPRKVILL   73 (470)
T ss_pred             CEEEEEeE-hHHHHHHHHHHHHCCC--eEEEEeCCHHH--HHHHHHhhhhcCCccee---cCCHHHHHhcCCCCCEEEEE
Confidence            48999998 9999999999999998  99999997622  122222110  111222   346666665   58988887


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCCC
Q 022947          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPV  166 (289)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~-~p~aiviv~tNPv  166 (289)
                      .-               +-+.++++++.+..+ .|+.+|+-.+|-.
T Consensus        74 v~---------------~~~~v~~vi~~l~~~L~~g~iIID~gn~~  104 (470)
T PTZ00142         74 IK---------------AGEAVDETIDNLLPLLEKGDIIIDGGNEW  104 (470)
T ss_pred             eC---------------ChHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence            42               224455555666654 3778888887753

>PRK07832 short chain dehydrogenase; Provisional

Probab=97.19  E-value=0.025  Score=50.95  Aligned_cols=118  Identities=20%  Similarity=0.184  Sum_probs=65.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEecCCCH----------HhhhCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQL----------EDALTG  114 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~~t~d~----------~eal~~  114 (289)
                      +++.|+||+|.+|..++..|+..|.  +|+++++++.  .....++.............+-.+.          .+.+..
T Consensus         1 k~vlItGas~giG~~la~~la~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   78 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGA--ELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGS   78 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            3799999999999999999999997  7999998752  2222233221111100000011111          122356


Q ss_pred             CCEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHH----HHHhCCCcEEEEecCCC
Q 022947          115 MDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEG----IAKCCPKAIVNLISNPV  166 (289)
Q Consensus       115 aDiVIitag~~~~~---g~~r---~d~~~~N~~i~~~i~~~----i~~~~p~aiviv~tNPv  166 (289)
                      .|++|+++|.....   ..+.   ...+..|+.....+++.    +.+....+.|++++...
T Consensus        79 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~  140 (272)
T PRK07832         79 MDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAA  140 (272)
T ss_pred             CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEcccc
Confidence            89999999864321   1121   23455666554444444    33333345666666543

>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=97.18  E-value=0.001  Score=59.33  Aligned_cols=108  Identities=18%  Similarity=0.238  Sum_probs=72.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc------hh---HHhhhhccc-CCceEE------EEecCCCHH
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT------PG---VTADISHMD-TNAVVR------GFLGQQQLE  109 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~------~g---~~~DL~~~~-~~~~v~------~~~~t~d~~  109 (289)
                      .-||+|+|. |.+|++.|.+++..|+  +|.|||+.+.      +.   ...+|+... ...+++      .++++++++
T Consensus         3 ~~ki~ivgS-gl~g~~WAmlFAs~Gy--qVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~   79 (313)
T KOG2305|consen    3 FGKIAIVGS-GLVGSSWAMLFASSGY--QVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLN   79 (313)
T ss_pred             ccceeEeec-ccccchHHHHHhccCc--eEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHH
Confidence            348999996 9999999999999999  9999999871      11   122333321 111221      245678888


Q ss_pred             hhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHH
Q 022947          110 DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPI  172 (289)
Q Consensus       110 eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~  172 (289)
                      |..++|=.|=.|+              .+.+...+.+.+++.+.. |+.++  .|..+..|...
T Consensus        80 E~vk~Ai~iQEcv--------------pE~L~lkk~ly~qlD~i~d~~tIl--aSSTSt~mpS~  127 (313)
T KOG2305|consen   80 ELVKGAIHIQECV--------------PEDLNLKKQLYKQLDEIADPTTIL--ASSTSTFMPSK  127 (313)
T ss_pred             HHHhhhhhHHhhc--------------hHhhHHHHHHHHHHHHhcCCceEE--eccccccChHH
Confidence            9888885544442              345667788888898876 55544  56666666543

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=97.18  E-value=0.018  Score=51.97  Aligned_cols=133  Identities=14%  Similarity=0.130  Sum_probs=84.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCceEEEEecC-------CCHHhhhCCCCE
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ-------QQLEDALTGMDI  117 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~~~t-------~d~~eal~~aDi  117 (289)
                      +-+.|+|||+-+|..+|..|+..|.  .|+|..++.  .+..+.++.+....+......+.       ..+.+.+.+.|+
T Consensus         7 kv~lITGASSGiG~A~A~~l~~~G~--~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iDi   84 (246)
T COG4221           7 KVALITGASSGIGEATARALAEAGA--KVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRIDI   84 (246)
T ss_pred             cEEEEecCcchHHHHHHHHHHHCCC--eEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCcccE
Confidence            3578999999999999999999998  999999977  44555555531111111111111       123345678999


Q ss_pred             EEEcCCCCCCCC------CchhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcE
Q 022947          118 VIIPAGVPRKPG------MTRDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRL  188 (289)
Q Consensus       118 VIitag~~~~~g------~~r~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kv  188 (289)
                      +|..||..+...      ++..+++..|++.+....+.+-..   ...+.||+++.=...-            .||...+
T Consensus        85 LvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~~------------~y~~~~v  152 (246)
T COG4221          85 LVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAGRY------------PYPGGAV  152 (246)
T ss_pred             EEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEeccccccc------------cCCCCcc
Confidence            999999754321      124457888988766555544322   2466888877544322            3777788


Q ss_pred             EEeee
Q 022947          189 LGVTM  193 (289)
Q Consensus       189 iG~t~  193 (289)
                      ++-|.
T Consensus       153 Y~ATK  157 (246)
T COG4221         153 YGATK  157 (246)
T ss_pred             chhhH
Confidence            87653

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=97.18  E-value=0.0055  Score=54.77  Aligned_cols=116  Identities=20%  Similarity=0.288  Sum_probs=65.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEE----ecCCCHHhh-------hCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGF----LGQQQLEDA-------LTG  114 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~----~~t~d~~ea-------l~~  114 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|++++.++.......+....  .++..+    ....+.++.       +..
T Consensus         8 ~k~~lItGas~gIG~aia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~   83 (251)
T PRK12481          8 GKVAIITGCNTGLGQGMAIGLAKAGA--DIVGVGVAEAPETQAQVEALG--RKFHFITADLIQQKDIDSIVSQAVEVMGH   83 (251)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence            35799999999999999999999998  899998754221111222111  122111    111122222       245


Q ss_pred             CCEEEEcCCCCCCC---CCc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecCC
Q 022947          115 MDIVIIPAGVPRKP---GMT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       115 aDiVIitag~~~~~---g~~---r~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tNP  165 (289)
                      .|++|.++|.....   ..+   -...+..|+.    +.+.+.+.+.+....+.|++++..
T Consensus        84 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~  144 (251)
T PRK12481         84 IDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASM  144 (251)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCCh
Confidence            79999999874321   111   1234555654    345555555544434667666543

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=97.17  E-value=0.0049  Score=54.80  Aligned_cols=118  Identities=14%  Similarity=0.130  Sum_probs=66.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEE----ecCCCHHhhh------
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGF----LGQQQLEDAL------  112 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~----~~t~d~~eal------  112 (289)
                      +.++|.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++....  .++..+    ....++..++      
T Consensus        10 ~~k~ilItGas~~IG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   85 (256)
T PRK06124         10 AGQVALVTGSARGLGFEIARALAGAGA--HVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAE   85 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHh
Confidence            356899999999999999999999997  8999998762  22222332211  111111    1111222222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecCCC
Q 022947          113 -TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPV  166 (289)
Q Consensus       113 -~~aDiVIitag~~~~~---g~~r---~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tNPv  166 (289)
                       ...|++|.++|.....   ..+.   .+.+..|+.....+.+.+.+.   ...+.+++++...
T Consensus        86 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~  149 (256)
T PRK06124         86 HGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIA  149 (256)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeech
Confidence             3569999999864221   1111   234566666555555444321   2345666666543

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=97.17  E-value=0.0022  Score=59.99  Aligned_cols=120  Identities=22%  Similarity=0.268  Sum_probs=73.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhH---HhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGV---TADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~---~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      |||+|+|+ |.||+.++..|.+.|.  +|.++-+.+. +..   -+.+.+........... +.+ .+....+|+||++.
T Consensus         1 mkI~IlGa-GAvG~l~g~~L~~~g~--~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~-~~~-~~~~~~~Dlviv~v   75 (307)
T COG1893           1 MKILILGA-GAIGSLLGARLAKAGH--DVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVA-ATD-AEALGPADLVIVTV   75 (307)
T ss_pred             CeEEEECC-cHHHHHHHHHHHhCCC--eEEEEecHHHHHHHHhCCeEEecCCCcccccccc-ccC-hhhcCCCCEEEEEe
Confidence            69999998 9999999999999994  6677665541 111   11222211100111111 122 46778999999985


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEE-Eeeec
Q 022947          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLL-GVTML  194 (289)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kvi-G~t~l  194 (289)
                      -.                --..+..+.+..+. |+++|+..=|=++..     |.+++  .+++++|+ |+|..
T Consensus        76 Ka----------------~q~~~al~~l~~~~~~~t~vl~lqNG~g~~-----e~l~~--~~~~~~il~G~~~~  126 (307)
T COG1893          76 KA----------------YQLEEALPSLAPLLGPNTVVLFLQNGLGHE-----EELRK--ILPKETVLGGVTTH  126 (307)
T ss_pred             cc----------------ccHHHHHHHhhhcCCCCcEEEEEeCCCcHH-----HHHHH--hCCcceEEEEEeee
Confidence            21                12455666777765 777888888888775     33443  35666555 56543

>PRK06398 aldose dehydrogenase; Validated

Probab=97.16  E-value=0.0036  Score=56.20  Aligned_cols=111  Identities=18%  Similarity=0.187  Sum_probs=62.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhH-----HhhhhcccCCceEEEEecCCCHHhhhCCCCEEEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-----TADISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~-----~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIi  120 (289)
                      .+++.|+|++|.+|..++..|+..|.  +|+++|+++....     ..|+.+..   .+...  .....+.+...|++|.
T Consensus         6 gk~vlItGas~gIG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~D~~~~~---~i~~~--~~~~~~~~~~id~li~   78 (258)
T PRK06398          6 DKVAIVTGGSQGIGKAVVNRLKEEGS--NVINFDIKEPSYNDVDYFKVDVSNKE---QVIKG--IDYVISKYGRIDILVN   78 (258)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCccccCceEEEEccCCCHH---HHHHH--HHHHHHHcCCCCEEEE
Confidence            35899999999999999999999997  8999998752111     11221110   00000  0011122357899999


Q ss_pred             cCCCCCCC---CCch---hhHHHhhHHHHH----HHHHHHHHhCCCcEEEEecC
Q 022947          121 PAGVPRKP---GMTR---DDLFNINAGIVK----TLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       121 tag~~~~~---g~~r---~d~~~~N~~i~~----~i~~~i~~~~p~aiviv~tN  164 (289)
                      ++|.....   ..+.   .+.+..|+....    .+.+.+.+. ..+.|+++|.
T Consensus        79 ~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g~iv~isS  131 (258)
T PRK06398         79 NAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQ-DKGVIINIAS  131 (258)
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCeEEEEeCc
Confidence            99874321   1111   233566655444    444444432 3456666554

>PRK07074 short chain dehydrogenase; Provisional

Probab=97.15  E-value=0.005  Score=54.78  Aligned_cols=34  Identities=35%  Similarity=0.322  Sum_probs=30.8

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      +++.|+||+|.+|..++..|+..|.  +|+++|++.
T Consensus         3 k~ilItGat~~iG~~la~~L~~~g~--~v~~~~r~~   36 (257)
T PRK07074          3 RTALVTGAAGGIGQALARRFLAAGD--RVLALDIDA   36 (257)
T ss_pred             CEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4799999999999999999999887  899999875

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=97.14  E-value=0.004  Score=57.73  Aligned_cols=64  Identities=16%  Similarity=0.252  Sum_probs=44.1

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCC---CCEEEEcC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTG---MDIVIIPA  122 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~---aDiVIita  122 (289)
                      |||+|||. |.+|+.++..|+..|+  +|.++|+++..  ..++....    +..   ..++++.++.   +|+||++.
T Consensus         1 m~Ig~IGl-G~MG~~mA~~L~~~g~--~v~v~dr~~~~--~~~~~~~g----~~~---~~~~~e~~~~~~~~dvvi~~v   67 (301)
T PRK09599          1 MQLGMIGL-GRMGGNMARRLLRGGH--EVVGYDRNPEA--VEALAEEG----ATG---ADSLEELVAKLPAPRVVWLMV   67 (301)
T ss_pred             CEEEEEcc-cHHHHHHHHHHHHCCC--eEEEEECCHHH--HHHHHHCC----Cee---cCCHHHHHhhcCCCCEEEEEe
Confidence            58999998 9999999999999987  89999987622  12222211    111   2244455554   69999874

>PRK09291 short chain dehydrogenase; Provisional

Probab=97.14  E-value=0.0079  Score=53.36  Aligned_cols=77  Identities=13%  Similarity=0.130  Sum_probs=47.4

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchh-HHhhh-hcccCCceEE--EEecCCCHHhhhC-CCCEEEEc
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADI-SHMDTNAVVR--GFLGQQQLEDALT-GMDIVIIP  121 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g-~~~DL-~~~~~~~~v~--~~~~t~d~~eal~-~aDiVIit  121 (289)
                      ++|.|+||+|.+|..++..|+..|.  +|++.+++.... ...+. ........+.  .+....++..++. +.|+||++
T Consensus         3 ~~vlVtGasg~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~   80 (257)
T PRK09291          3 KTILITGAGSGFGREVALRLARKGH--NVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNN   80 (257)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence            4799999999999999999999997  888888765211 11111 1111111111  1111123334444 89999999


Q ss_pred             CCCC
Q 022947          122 AGVP  125 (289)
Q Consensus       122 ag~~  125 (289)
                      +|..
T Consensus        81 ag~~   84 (257)
T PRK09291         81 AGIG   84 (257)
T ss_pred             CCcC
Confidence            9865

>PRK08264 short chain dehydrogenase; Validated

Probab=97.14  E-value=0.007  Score=53.13  Aligned_cols=113  Identities=15%  Similarity=0.083  Sum_probs=63.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEE----EecCCCHHhhh---CCCCEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG----FLGQQQLEDAL---TGMDIV  118 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~----~~~t~d~~eal---~~aDiV  118 (289)
                      .++|.|+||+|.+|+.++..|+..|. .+|++++++.....  +   .  ...+..    ....+++++.+   ...|+|
T Consensus         6 ~~~vlItGgsg~iG~~la~~l~~~G~-~~V~~~~r~~~~~~--~---~--~~~~~~~~~D~~~~~~~~~~~~~~~~id~v   77 (238)
T PRK08264          6 GKVVLVTGANRGIGRAFVEQLLARGA-AKVYAAARDPESVT--D---L--GPRVVPLQLDVTDPASVAAAAEAASDVTIL   77 (238)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCc-ccEEEEecChhhhh--h---c--CCceEEEEecCCCHHHHHHHHHhcCCCCEE
Confidence            35899999999999999999998884 37888988652111  1   0  011111    11112233333   358999


Q ss_pred             EEcCCCCCCC----CCch---hhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecCCC
Q 022947          119 IIPAGVPRKP----GMTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPV  166 (289)
Q Consensus       119 Iitag~~~~~----g~~r---~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tNPv  166 (289)
                      |.++|.....    ..+.   .+.+..|......+.+.+.+.   ...+.++++|...
T Consensus        78 i~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~  135 (238)
T PRK08264         78 VNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVL  135 (238)
T ss_pred             EECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChh
Confidence            9999873221    1111   223455665555555554432   2345566666543

>PRK08818 prephenate dehydrogenase; Provisional

Probab=97.14  E-value=0.0032  Score=60.31  Aligned_cols=55  Identities=25%  Similarity=0.317  Sum_probs=43.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhC-CCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~-g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      .+||+|||.+|.+|.+++..|... ++  +|+.+|.+          +.          ...+.++.+++||+||+|.
T Consensus         4 ~~~I~IIGl~GliGgslA~alk~~~~~--~V~g~D~~----------d~----------~~~~~~~~v~~aDlVilav   59 (370)
T PRK08818          4 QPVVGIVGSAGAYGRWLARFLRTRMQL--EVIGHDPA----------DP----------GSLDPATLLQRADVLIFSA   59 (370)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCC--EEEEEcCC----------cc----------ccCCHHHHhcCCCEEEEeC
Confidence            459999998899999999999865 44  89999863          11          0124567899999999995

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=97.13  E-value=0.011  Score=61.07  Aligned_cols=36  Identities=28%  Similarity=0.246  Sum_probs=32.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      ..++|.|+||+|.+|..++..|++.|.  +|+++|++.
T Consensus       413 ~gkvvLVTGasggIG~aiA~~La~~Ga--~Vvi~~r~~  448 (676)
T TIGR02632       413 ARRVAFVTGGAGGIGRETARRLAAEGA--HVVLADLNL  448 (676)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCCH
Confidence            356899999999999999999999997  999999876

>PRK06138 short chain dehydrogenase; Provisional

Probab=97.13  E-value=0.013  Score=51.70  Aligned_cols=35  Identities=29%  Similarity=0.283  Sum_probs=31.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .+++.|+||+|.+|+.++..|+..|.  +|++++++.
T Consensus         5 ~k~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~   39 (252)
T PRK06138          5 GRVAIVTGAGSGIGRATAKLFAREGA--RVVVADRDA   39 (252)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCC--eEEEecCCH
Confidence            45899999999999999999999987  899999875

>PRK05854 short chain dehydrogenase; Provisional

Probab=97.13  E-value=0.0066  Score=56.41  Aligned_cols=115  Identities=22%  Similarity=0.145  Sum_probs=64.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCCH---H-------hhh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL---E-------DAL  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~---~-------eal  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|++.+++..  .....++........+..+. +-.|+   +       +..
T Consensus        14 gk~~lITGas~GIG~~~a~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~   91 (313)
T PRK05854         14 GKRAVVTGASDGLGLGLARRLAAAGA--EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG   91 (313)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence            45899999999999999999999997  8999998762  22222332211111222111 11121   1       112


Q ss_pred             CCCCEEEEcCCCCCCCC--Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 022947          113 TGMDIVIIPAGVPRKPG--MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g--~~---r~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      ...|++|..||....+.  .+   -...+..|..    +.+.+.+.+++.  .+.|+++|.
T Consensus        92 ~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~--~~riv~vsS  150 (313)
T PRK05854         92 RPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAG--RARVTSQSS  150 (313)
T ss_pred             CCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhC--CCCeEEEec
Confidence            45899999998643211  11   1223445544    355555555443  345555554

>PLN02712 arogenate dehydrogenase

Probab=97.12  E-value=0.003  Score=64.97  Aligned_cols=91  Identities=12%  Similarity=0.092  Sum_probs=58.6

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhh-CCCCEEEEcC
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL-TGMDIVIIPA  122 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal-~~aDiVIita  122 (289)
                      .+++||+|||. |.+|..++..|...|+  +|+.+|++.....+.++       .+..   ..++.+.+ +++|+||++.
T Consensus        50 ~~~~kIgIIG~-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~A~~~-------Gv~~---~~d~~e~~~~~aDvViLav  116 (667)
T PLN02712         50 TTQLKIAIIGF-GNYGQFLAKTLISQGH--TVLAHSRSDHSLAARSL-------GVSF---FLDPHDLCERHPDVILLCT  116 (667)
T ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHc-------CCEE---eCCHHHHhhcCCCEEEEcC
Confidence            44689999998 9999999999998886  89999987422112211       1111   23455544 5799999984


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHH-Hh-CCCcEEEEec
Q 022947          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIA-KC-CPKAIVNLIS  163 (289)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~-~~-~p~aiviv~t  163 (289)
                      -                ...+.++++.+. .+ .|+++|+-++
T Consensus       117 P----------------~~~~~~vl~~l~~~~l~~g~iVvDv~  143 (667)
T PLN02712        117 S----------------IISTENVLKSLPLQRLKRNTLFVDVL  143 (667)
T ss_pred             C----------------HHHHHHHHHhhhhhcCCCCeEEEECC
Confidence            2                123455555554 23 4677776665

>PRK13243 glyoxylate reductase; Reviewed

Probab=97.12  E-value=0.0026  Score=60.08  Aligned_cols=97  Identities=21%  Similarity=0.291  Sum_probs=61.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      ..++|+|||. |.+|+.+|..|...|.  +|..+|+........  .. .    .. .   .++++.+++||+|+++...
T Consensus       149 ~gktvgIiG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~--~~-~----~~-~---~~l~ell~~aDiV~l~lP~  214 (333)
T PRK13243        149 YGKTIGIIGF-GRIGQAVARRAKGFGM--RILYYSRTRKPEAEK--EL-G----AE-Y---RPLEELLRESDFVSLHVPL  214 (333)
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCChhhHH--Hc-C----CE-e---cCHHHHHhhCCEEEEeCCC
Confidence            3569999998 9999999999988887  899999864211111  11 0    11 1   2577889999999998532


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec--CCCcc
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVNS  168 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t--NPvd~  168 (289)
                      .  + +        +..++.+  +.+....|.+++|+++  ..+|.
T Consensus       215 t--~-~--------T~~~i~~--~~~~~mk~ga~lIN~aRg~~vd~  247 (333)
T PRK13243        215 T--K-E--------TYHMINE--ERLKLMKPTAILVNTARGKVVDT  247 (333)
T ss_pred             C--h-H--------HhhccCH--HHHhcCCCCeEEEECcCchhcCH
Confidence            1  1 1        1111211  2344445889999985  44544

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=97.12  E-value=0.0013  Score=61.05  Aligned_cols=64  Identities=20%  Similarity=0.302  Sum_probs=47.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      +||+|||. |.+|..++..|+..|+  +|.++|+++..  ..++....    ..   ...++.+++++||+||++.
T Consensus         2 ~~Ig~IGl-G~mG~~mA~~l~~~G~--~V~v~d~~~~~--~~~~~~~g----~~---~~~s~~~~~~~aDvVi~~v   65 (296)
T PRK15461          2 AAIAFIGL-GQMGSPMASNLLKQGH--QLQVFDVNPQA--VDALVDKG----AT---PAASPAQAAAGAEFVITML   65 (296)
T ss_pred             CeEEEEee-CHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHcC----Cc---ccCCHHHHHhcCCEEEEec
Confidence            48999998 9999999999999997  89999987622  12222211    11   1235668889999999985

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.12  E-value=0.0071  Score=53.44  Aligned_cols=33  Identities=18%  Similarity=0.166  Sum_probs=28.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV   81 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~   81 (289)
                      ++|.|+||+|.+|..++..|+..|.  +|++.+.+
T Consensus         6 k~ilItGas~gIG~~la~~l~~~G~--~vv~~~~~   38 (253)
T PRK08642          6 QTVLVTGGSRGLGAAIARAFAREGA--RVVVNYHQ   38 (253)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCC--eEEEEcCC
Confidence            5899999999999999999999997  78776543

>PRK05650 short chain dehydrogenase; Provisional

Probab=97.12  E-value=0.0055  Score=55.14  Aligned_cols=113  Identities=19%  Similarity=0.151  Sum_probs=63.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhh-------hC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------LT  113 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------l~  113 (289)
                      ++|.|+||+|.+|..++..|+..|.  +|++.|++..  .....++....  .++..+. +..+   ..+.       +.
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~i~~~~~   76 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGW--RLALADVNEEGGEETLKLLREAG--GDGFYQRCDVRDYSQLTALAQACEEKWG   76 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999999997  8999998752  22222232221  1121111 1112   2222       24


Q ss_pred             CCCEEEEcCCCCCCC---CCch---hhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 022947          114 GMDIVIIPAGVPRKP---GMTR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       114 ~aDiVIitag~~~~~---g~~r---~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      ..|++|.++|.....   ..+.   ...+..|+.    ..+.+.+.+++.. .+.++++|.
T Consensus        77 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~vsS  136 (270)
T PRK05650         77 GIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQK-SGRIVNIAS  136 (270)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCC-CCEEEEECC
Confidence            689999999864321   1111   223455644    3444555555543 345555554

>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase

Probab=97.11  E-value=0.0066  Score=52.98  Aligned_cols=114  Identities=18%  Similarity=0.245  Sum_probs=65.7

Q ss_pred             EEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-c--hhHHhhhhcccCCceEEEE----ecCCCHHhhh-------CC
Q 022947           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGVTADISHMDTNAVVRGF----LGQQQLEDAL-------TG  114 (289)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~--~g~~~DL~~~~~~~~v~~~----~~t~d~~eal-------~~  114 (289)
                      |.|+|++|.+|+.++..|+++|+  +|++++.+. .  .....++.+..  .++..+    ....++++.+       ..
T Consensus         1 vlItG~~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   76 (239)
T TIGR01830         1 ALVTGASRGIGRAIALKLAKEGA--KVIITYRSSEEGAEEVVEELKAYG--VKALGVVCDVSDREDVKAVVEEIEEELGP   76 (239)
T ss_pred             CEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            46899999999999999999997  899998764 1  12222332221  112111    1111222223       34


Q ss_pred             CCEEEEcCCCCCCC---C---CchhhHHHhhHHHHHHHHHHHHHhC---CCcEEEEecCCC
Q 022947          115 MDIVIIPAGVPRKP---G---MTRDDLFNINAGIVKTLCEGIAKCC---PKAIVNLISNPV  166 (289)
Q Consensus       115 aDiVIitag~~~~~---g---~~r~d~~~~N~~i~~~i~~~i~~~~---p~aiviv~tNPv  166 (289)
                      .|+||+++|.....   +   ....+.+..|+.....+.+.+.++.   ..+.++++|...
T Consensus        77 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~  137 (239)
T TIGR01830        77 IDILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVV  137 (239)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCcc
Confidence            69999999864211   1   1123456677777776766665542   234566655543

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.

>PRK06197 short chain dehydrogenase; Provisional

Probab=97.11  E-value=0.008  Score=55.33  Aligned_cols=116  Identities=22%  Similarity=0.133  Sum_probs=65.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchh--HHhhhhcccCCceEEEEe-cCCC---HHhh-------h
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFL-GQQQ---LEDA-------L  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g--~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------l  112 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|++++++....  ...++........+..+. +-.|   .++.       +
T Consensus        16 ~k~vlItGas~gIG~~~a~~l~~~G~--~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~   93 (306)
T PRK06197         16 GRVAVVTGANTGLGYETAAALAAKGA--HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAY   93 (306)
T ss_pred             CCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhC
Confidence            35899999999999999999999997  899998875211  122232111011222211 1112   1111       2


Q ss_pred             CCCCEEEEcCCCCCCCC-C---chhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 022947          113 TGMDIVIIPAGVPRKPG-M---TRDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g-~---~r~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      ...|++|++||....+. .   .-...+..|...    .+.+.+.+++.. .+.|+++|.
T Consensus        94 ~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vSS  152 (306)
T PRK06197         94 PRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVP-GSRVVTVSS  152 (306)
T ss_pred             CCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCC-CCEEEEECC
Confidence            36899999998642211 1   112334556554    666666666543 345666553

>PRK08339 short chain dehydrogenase; Provisional

Probab=97.11  E-value=0.04  Score=49.59  Aligned_cols=116  Identities=15%  Similarity=0.146  Sum_probs=66.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEE----ecCCCHHhhh------C
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGF----LGQQQLEDAL------T  113 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~----~~t~d~~eal------~  113 (289)
                      .+.+.|+|++|.+|..++..|+..|.  +|+++|++..  .....++.... ..++..+    ....+.++.+      .
T Consensus         8 ~k~~lItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g   84 (263)
T PRK08339          8 GKLAFTTASSKGIGFGVARVLARAGA--DVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIG   84 (263)
T ss_pred             CCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence            34789999999999999999999997  8999998752  22222232211 1122211    1111222222      3


Q ss_pred             CCCEEEEcCCCCCCC---CCch---hhHHHhh----HHHHHHHHHHHHHhCCCcEEEEecCC
Q 022947          114 GMDIVIIPAGVPRKP---GMTR---DDLFNIN----AGIVKTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       114 ~aDiVIitag~~~~~---g~~r---~d~~~~N----~~i~~~i~~~i~~~~p~aiviv~tNP  165 (289)
                      ..|++|.++|.+...   ..+.   ...+..|    +...+.+.+.+++.. .+.|+++|..
T Consensus        85 ~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~-~g~Ii~isS~  145 (263)
T PRK08339         85 EPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKG-FGRIIYSTSV  145 (263)
T ss_pred             CCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEcCc
Confidence            589999999865321   1121   2234444    345666777766543 4566666553

>PRK06128 oxidoreductase; Provisional

Probab=97.10  E-value=0.033  Score=51.19  Aligned_cols=115  Identities=23%  Similarity=0.246  Sum_probs=67.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc----hhHHhhhhcccCCceEEEEe-cCCC---HH-------h
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTNAVVRGFL-GQQQ---LE-------D  110 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~----~g~~~DL~~~~~~~~v~~~~-~t~d---~~-------e  110 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|++.+.+..    ......+....  .++..+. +-.+   .+       +
T Consensus        55 ~k~vlITGas~gIG~~~a~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~  130 (300)
T PRK06128         55 GRKALITGADSGIGRATAIAFAREGA--DIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAVK  130 (300)
T ss_pred             CCEEEEecCCCcHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHHH
Confidence            46899999999999999999999997  8888776431    11112222211  1111111 1111   11       2


Q ss_pred             hhCCCCEEEEcCCCCC--CC--CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 022947          111 ALTGMDIVIIPAGVPR--KP--GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (289)
Q Consensus       111 al~~aDiVIitag~~~--~~--g~~---r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tN  164 (289)
                      .+...|++|++||...  .+  ..+   -.+.+..|+.....+++.+.++- +.+.|++++.
T Consensus       131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS  192 (300)
T PRK06128        131 ELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGS  192 (300)
T ss_pred             HhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECC
Confidence            2347899999998642  11  111   23456778777767777766553 3456666654

>PRK05693 short chain dehydrogenase; Provisional

Probab=97.10  E-value=0.0081  Score=54.18  Aligned_cols=34  Identities=24%  Similarity=0.219  Sum_probs=30.8

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      +++.|+||+|.+|..++..|+..|.  +|++++++.
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~   35 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGY--EVWATARKA   35 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            5799999999999999999999997  899999875

>PRK06701 short chain dehydrogenase; Provisional

Probab=97.09  E-value=0.035  Score=50.92  Aligned_cols=115  Identities=14%  Similarity=0.125  Sum_probs=68.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc---hhHHhhhhcccCCceEEEEe-cCC---CHHhhh------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFL-GQQ---QLEDAL------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~---~g~~~DL~~~~~~~~v~~~~-~t~---d~~eal------  112 (289)
                      .++|.|+||+|.+|+.++..|+..|.  +|+++++++.   ......+...  ..++..+. +-.   ++.+.+      
T Consensus        46 ~k~iLItGasggIG~~la~~l~~~G~--~V~l~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~i~~~  121 (290)
T PRK06701         46 GKVALITGGDSGIGRAVAVLFAKEGA--DIAIVYLDEHEDANETKQRVEKE--GVKCLLIPGDVSDEAFCKDAVEETVRE  121 (290)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999999997  8999988752   1111222211  11222111 111   122222      


Q ss_pred             -CCCCEEEEcCCCCCC--C--CCch---hhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecC
Q 022947          113 -TGMDIVIIPAGVPRK--P--GMTR---DDLFNINAGIVKTLCEGIAKC-CPKAIVNLISN  164 (289)
Q Consensus       113 -~~aDiVIitag~~~~--~--g~~r---~d~~~~N~~i~~~i~~~i~~~-~p~aiviv~tN  164 (289)
                       ...|+||+++|....  +  ..+.   .+.+..|+.....+.+.+.+. .+.+.++++|.
T Consensus       122 ~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS  182 (290)
T PRK06701        122 LGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS  182 (290)
T ss_pred             cCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence             357999999986321  1  1111   335677877777777777654 34556666654

>PRK08226 short chain dehydrogenase; Provisional

Probab=97.08  E-value=0.0081  Score=53.63  Aligned_cols=115  Identities=21%  Similarity=0.246  Sum_probs=64.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcccCCceEEEEe-cCCC---HHhh-------hC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------LT  113 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------l~  113 (289)
                      .+++.|+|++|.+|+.++..|+..|.  +|+++++++. .....++...  ..++..+. +-++   +++.       +.
T Consensus         6 ~~~~lItG~s~giG~~la~~l~~~G~--~Vv~~~r~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~   81 (263)
T PRK08226          6 GKTALITGALQGIGEGIARVFARHGA--NLILLDISPEIEKLADELCGR--GHRCTAVVADVRDPASVAAAIKRAKEKEG   81 (263)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHh--CCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            46899999999999999999999997  8999998752 1112222211  11221111 1112   2222       23


Q ss_pred             CCCEEEEcCCCCCCC---CC---chhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 022947          114 GMDIVIIPAGVPRKP---GM---TRDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (289)
Q Consensus       114 ~aDiVIitag~~~~~---g~---~r~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tN  164 (289)
                      ..|+||+++|.....   ..   ...+.+..|+.....+.+.+.++   ...+.++++|.
T Consensus        82 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS  141 (263)
T PRK08226         82 RIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSS  141 (263)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECc
Confidence            679999999863211   11   12234566766555555554432   23345555543

>PRK07825 short chain dehydrogenase; Provisional

Probab=97.08  E-value=0.011  Score=53.30  Aligned_cols=115  Identities=18%  Similarity=0.161  Sum_probs=63.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--hHHhhhhcccCCceEEEEecCCC-------HHhhhCCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLGQQQ-------LEDALTGMD  116 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g~~~DL~~~~~~~~v~~~~~t~d-------~~eal~~aD  116 (289)
                      .++|.|+||+|.+|..++..|+..|.  .|++.++++..  ....++....  .....+...++       ..+.+.+.|
T Consensus         5 ~~~ilVtGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~D~~~~~~~~~~~~~~~~~~~~id   80 (273)
T PRK07825          5 GKVVAITGGARGIGLATARALAALGA--RVAIGDLDEALAKETAAELGLVV--GGPLDVTDPASFAAFLDAVEADLGPID   80 (273)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhccce--EEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            45899999999999999999999997  89999987521  1111221110  00000111111       112235789


Q ss_pred             EEEEcCCCCCCC---CCc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecCC
Q 022947          117 IVIIPAGVPRKP---GMT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       117 iVIitag~~~~~---g~~---r~d~~~~N~~i~----~~i~~~i~~~~p~aiviv~tNP  165 (289)
                      ++|.++|.....   ..+   -...+..|+...    +.+.+.+.+. +.+.|+++|.-
T Consensus        81 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~g~iv~isS~  138 (273)
T PRK07825         81 VLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPR-GRGHVVNVASL  138 (273)
T ss_pred             EEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCEEEEEcCc
Confidence            999999874321   111   123455666533    4444444443 34566666643

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=97.08  E-value=0.0057  Score=49.39  Aligned_cols=72  Identities=24%  Similarity=0.331  Sum_probs=44.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccC--CceEEEEecCCCHHhhhCCCCEEEEc
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVIIP  121 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~--~~~v~~~~~t~d~~eal~~aDiVIit  121 (289)
                      |||+|+|++|.+|+.++..+...+-..=+..+|.++....-.|+.+...  ...+..   ++|+++.++.+|+||-.
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v---~~~l~~~~~~~DVvIDf   74 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPV---TDDLEELLEEADVVIDF   74 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBE---BS-HHHHTTH-SEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCccccc---chhHHHhcccCCEEEEc
Confidence            6999999999999999998888543323556676652112233332211  112222   35788889999998876

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.07  E-value=0.01  Score=51.90  Aligned_cols=35  Identities=23%  Similarity=0.254  Sum_probs=29.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      +++|.|+||+|.+|+.++..|+++|+  +++++....
T Consensus         6 ~~~vlItGasg~iG~~l~~~l~~~g~--~v~~~~~~~   40 (249)
T PRK12825          6 GRVALVTGAARGLGRAIALRLARAGA--DVVVHYRSD   40 (249)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCC
Confidence            46899999999999999999999998  666655443

>PRK08589 short chain dehydrogenase; Validated

Probab=97.07  E-value=0.011  Score=53.49  Aligned_cols=114  Identities=18%  Similarity=0.259  Sum_probs=64.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-chhHHhhhhcccCCceEEEE----ecCCCHHh-------hhC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGF----LGQQQLED-------ALT  113 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~~g~~~DL~~~~~~~~v~~~----~~t~d~~e-------al~  113 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++++++ ......++.+..  .++..+    ....+..+       .+.
T Consensus         6 ~k~vlItGas~gIG~aia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   81 (272)
T PRK08589          6 NKVAVITGASTGIGQASAIALAQEGA--YVLAVDIAEAVSETVDKIKSNG--GKAKAYHVDISDEQQVKDFASEIKEQFG   81 (272)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            45899999999999999999999997  899999874 222223332211  111111    11111212       124


Q ss_pred             CCCEEEEcCCCCCCCC----Cch---hhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecCC
Q 022947          114 GMDIVIIPAGVPRKPG----MTR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       114 ~aDiVIitag~~~~~g----~~r---~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tNP  165 (289)
                      ..|++|.++|.....+    .+.   ...+..|+.    +.+.+.+.+++.  .+.|++++..
T Consensus        82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~g~iv~isS~  142 (272)
T PRK08589         82 RVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQ--GGSIINTSSF  142 (272)
T ss_pred             CcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCEEEEeCch
Confidence            5799999998753211    111   223344544    344555555443  3677776653

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.07  E-value=0.0062  Score=53.45  Aligned_cols=103  Identities=22%  Similarity=0.287  Sum_probs=58.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEE-eCCCch--hHHhhhhcccCCceEEEEe-cCCC---HHhhh------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNTP--GVTADISHMDTNAVVRGFL-GQQQ---LEDAL------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~Lv-D~~~~~--g~~~DL~~~~~~~~v~~~~-~t~d---~~eal------  112 (289)
                      +++|.|+|++|.+|..++..|+..|.  +++++ +++...  ....++...  ...+..+. +-.|   +.+.+      
T Consensus         5 ~~~ilI~Gasg~iG~~la~~l~~~g~--~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   80 (247)
T PRK05565          5 GKVAIVTGASGGIGRAIAELLAKEGA--KVVIAYDINEEAAQELLEEIKEE--GGDAIAVKADVSSEEDVENLVEQIVEK   80 (247)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999998887  78887 876521  111122221  11222211 1112   22222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHH
Q 022947          113 -TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIAK  152 (289)
Q Consensus       113 -~~aDiVIitag~~~~~---g~~r---~d~~~~N~~i~~~i~~~i~~  152 (289)
                       ...|+||+++|.....   ..+.   .+.+..|......+.+.+..
T Consensus        81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~  127 (247)
T PRK05565         81 FGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALP  127 (247)
T ss_pred             hCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHH
Confidence             2789999999864211   1111   23455676665555554443

>PRK09009 C factor cell-cell signaling protein; Provisional

Probab=97.07  E-value=0.008  Score=52.72  Aligned_cols=71  Identities=18%  Similarity=0.291  Sum_probs=44.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEe-cCCC------HHhhhCCCCEEE
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQ------LEDALTGMDIVI  119 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~-~t~d------~~eal~~aDiVI  119 (289)
                      |+|.|+||+|.+|..++..|+.++....+++.+++....    ..    ..++..+. +-++      +.+.+...|++|
T Consensus         1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~----~~----~~~~~~~~~Dls~~~~~~~~~~~~~~id~li   72 (235)
T PRK09009          1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD----FQ----HDNVQWHALDVTDEAEIKQLSEQFTQLDWLI   72 (235)
T ss_pred             CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc----cc----cCceEEEEecCCCHHHHHHHHHhcCCCCEEE
Confidence            589999999999999999998876433677666644211    11    01111110 1111      223457899999


Q ss_pred             EcCCCC
Q 022947          120 IPAGVP  125 (289)
Q Consensus       120 itag~~  125 (289)
                      .++|..
T Consensus        73 ~~aG~~   78 (235)
T PRK09009         73 NCVGML   78 (235)
T ss_pred             ECCccc
Confidence            999975

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=97.07  E-value=0.0082  Score=53.50  Aligned_cols=35  Identities=34%  Similarity=0.373  Sum_probs=31.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .+++.|+||+|.+|.+++..|+..|.  +|+++|+++
T Consensus         8 ~k~vlVtGas~gIG~~la~~l~~~G~--~v~~~~r~~   42 (260)
T PRK12823          8 GKVVVVTGAAQGIGRGVALRAAAEGA--RVVLVDRSE   42 (260)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCch
Confidence            46899999999999999999999997  899999875

>PRK08251 short chain dehydrogenase; Provisional

Probab=97.07  E-value=0.012  Score=51.99  Aligned_cols=115  Identities=21%  Similarity=0.222  Sum_probs=63.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCCH----------HhhhC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL----------EDALT  113 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~----------~eal~  113 (289)
                      +++.|+||+|.+|..++..|+..|.  +|++.+++..  .....++........+..+. +.++.          .+.+.
T Consensus         3 k~vlItGas~giG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   80 (248)
T PRK08251          3 QKILITGASSGLGAGMAREFAAKGR--DLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG   80 (248)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999999886  8999998762  11222222211111222211 11222          12235


Q ss_pred             CCCEEEEcCCCCCCCCC---c---hhhHHHhhHHHHHHHHHHH----HHhCCCcEEEEecC
Q 022947          114 GMDIVIIPAGVPRKPGM---T---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISN  164 (289)
Q Consensus       114 ~aDiVIitag~~~~~g~---~---r~d~~~~N~~i~~~i~~~i----~~~~p~aiviv~tN  164 (289)
                      ..|++|+++|.......   +   -.+.+..|+.....+.+.+    ++... ..++++|.
T Consensus        81 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~~sS  140 (248)
T PRK08251         81 GLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGS-GHLVLISS  140 (248)
T ss_pred             CCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CeEEEEec
Confidence            78999999987432211   1   1223456665544444443    33333 34554443

>PRK06196 oxidoreductase; Provisional

Probab=97.06  E-value=0.0072  Score=55.96  Aligned_cols=113  Identities=21%  Similarity=0.167  Sum_probs=64.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchh--HHhhhhcccCCceEE-EEecCCCHHh-------hhCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVR-GFLGQQQLED-------ALTGM  115 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g--~~~DL~~~~~~~~v~-~~~~t~d~~e-------al~~a  115 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|++++++....  ...++....   .+. .+....+.++       .+...
T Consensus        26 ~k~vlITGasggIG~~~a~~L~~~G~--~Vv~~~R~~~~~~~~~~~l~~v~---~~~~Dl~d~~~v~~~~~~~~~~~~~i  100 (315)
T PRK06196         26 GKTAIVTGGYSGLGLETTRALAQAGA--HVIVPARRPDVAREALAGIDGVE---VVMLDLADLESVRAFAERFLDSGRRI  100 (315)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhCe---EEEccCCCHHHHHHHHHHHHhcCCCC
Confidence            35899999999999999999999997  899999875211  112221110   000 0111111111       12578


Q ss_pred             CEEEEcCCCCCCCC----CchhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 022947          116 DIVIIPAGVPRKPG----MTRDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       116 DiVIitag~~~~~g----~~r~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      |++|++||....+.    +.....+..|...    .+.+.+.+++.. .+.|+++|.
T Consensus       101 D~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vSS  156 (315)
T PRK06196        101 DILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGA-GARVVALSS  156 (315)
T ss_pred             CEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCeEEEECC
Confidence            99999998643221    1122334556544    555666665543 356666653

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=97.06  E-value=0.032  Score=49.73  Aligned_cols=115  Identities=17%  Similarity=0.223  Sum_probs=65.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEe-cCCC---HHhh-------hCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------LTG  114 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------l~~  114 (289)
                      .+.+.|+|++|.+|..++..|+..|.  +|+++|..+......++....  ..+..+. +-+|   +.+.       +..
T Consensus        10 ~k~~lItG~~~gIG~a~a~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   85 (253)
T PRK08993         10 GKVAVVTGCDTGLGQGMALGLAEAGC--DIVGINIVEPTETIEQVTALG--RRFLSLTADLRKIDGIPALLERAVAEFGH   85 (253)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEecCcchHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            34799999999999999999999997  888888765322222222111  1111111 1112   2222       246


Q ss_pred             CCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHH----HHHHHHHHhCCCcEEEEecC
Q 022947          115 MDIVIIPAGVPRKP---GMT---RDDLFNINAGIVK----TLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       115 aDiVIitag~~~~~---g~~---r~d~~~~N~~i~~----~i~~~i~~~~p~aiviv~tN  164 (289)
                      .|++|.+||.....   ..+   -.+.+..|+....    .+.+.+.+..+.+.++++|.
T Consensus        86 ~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS  145 (253)
T PRK08993         86 IDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIAS  145 (253)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECc
Confidence            89999999874321   111   2234566665444    44444444344567766654

>PRK06523 short chain dehydrogenase; Provisional

Probab=97.06  E-value=0.0022  Score=57.22  Aligned_cols=112  Identities=19%  Similarity=0.271  Sum_probs=63.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhH-------HhhhhcccCCceEEEEecCCCHHhhhCCCCEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-------TADISHMDTNAVVRGFLGQQQLEDALTGMDIV  118 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~-------~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiV  118 (289)
                      .++|.|+|++|.+|..++..|+..|.  +|+++++++....       ..|+.+..   .+...  .....+.+...|+|
T Consensus         9 ~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~D~~~~~---~~~~~--~~~~~~~~~~id~v   81 (260)
T PRK06523          9 GKRALVTGGTKGIGAATVARLLEAGA--RVVTTARSRPDDLPEGVEFVAADLTTAE---GCAAV--ARAVLERLGGVDIL   81 (260)
T ss_pred             CCEEEEECCCCchhHHHHHHHHHCCC--EEEEEeCChhhhcCCceeEEecCCCCHH---HHHHH--HHHHHHHcCCCCEE
Confidence            35899999999999999999999997  8999998652110       01111100   00000  00112334678999


Q ss_pred             EEcCCCCCCC-C----Cc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecCC
Q 022947          119 IIPAGVPRKP-G----MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       119 Iitag~~~~~-g----~~---r~d~~~~N~~i~----~~i~~~i~~~~p~aiviv~tNP  165 (289)
                      |.++|..... +    .+   -.+.+..|+...    +.+.+.+++.. .+.++++|..
T Consensus        82 i~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~ii~isS~  139 (260)
T PRK06523         82 VHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARG-SGVIIHVTSI  139 (260)
T ss_pred             EECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CcEEEEEecc
Confidence            9999854211 1    11   223345565433    44555555543 3556666654

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=97.06  E-value=0.018  Score=50.85  Aligned_cols=115  Identities=15%  Similarity=0.201  Sum_probs=63.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC---chhHHhhhhcccCCceEEEEe-cCCC---HHhhh------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFL-GQQQ---LEDAL------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~---~~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal------  112 (289)
                      .+++.|+|++|.+|+.++..|+..|.  ++++.+...   ......++.+..  .++..+. +..+   +.+++      
T Consensus         6 ~~~~lItG~s~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (247)
T PRK12935          6 GKVAIVTGGAKGIGKAITVALAQEGA--KVVINYNSSKEAAENLVNELGKEG--HDVYAVQADVSKVEDANRLVEEAVNH   81 (247)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCC--EEEEEcCCcHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999999887  777665432   111222332211  1222211 1112   22222      


Q ss_pred             -CCCCEEEEcCCCCCCCC------CchhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 022947          113 -TGMDIVIIPAGVPRKPG------MTRDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (289)
Q Consensus       113 -~~aDiVIitag~~~~~g------~~r~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tN  164 (289)
                       ...|+||+++|......      +.-.+.+..|+.....+.+.+..+   ...+.+++++.
T Consensus        82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  143 (247)
T PRK12935         82 FGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISS  143 (247)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence             34799999998743221      112334566766655555555433   23455666554

>PRK05866 short chain dehydrogenase; Provisional

Probab=97.05  E-value=0.0082  Score=55.24  Aligned_cols=35  Identities=20%  Similarity=0.250  Sum_probs=31.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|++.
T Consensus        40 ~k~vlItGasggIG~~la~~La~~G~--~Vi~~~R~~   74 (293)
T PRK05866         40 GKRILLTGASSGIGEAAAEQFARRGA--TVVAVARRE   74 (293)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            36899999999999999999999997  999999876

>PRK06198 short chain dehydrogenase; Provisional

Probab=97.05  E-value=0.036  Score=49.26  Aligned_cols=115  Identities=15%  Similarity=0.163  Sum_probs=63.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccE-EEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSV-LHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------  111 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~e-I~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------  111 (289)
                      .++|.|+||+|.+|..++..|+..|.  + |+++|++..  .....++...  ...+..+. +-.+   +.+.       
T Consensus         6 ~k~vlItGa~g~iG~~la~~l~~~G~--~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (260)
T PRK06198          6 GKVALVTGGTQGLGAAIARAFAERGA--AGLVICGRNAEKGEAQAAELEAL--GAKAVFVQADLSDVEDCRRVVAAADEA   81 (260)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCC--CeEEEEcCCHHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999998886  5 999998752  1111222111  11222111 1112   2222       


Q ss_pred             hCCCCEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHH----HHHHHHhCCCcEEEEecC
Q 022947          112 LTGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTL----CEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       112 l~~aDiVIitag~~~~~---g~~r---~d~~~~N~~i~~~i----~~~i~~~~p~aiviv~tN  164 (289)
                      +.+.|++|.++|.....   ..+.   ...+..|+.....+    .+.+.+....+.++++|.
T Consensus        82 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss  144 (260)
T PRK06198         82 FGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGS  144 (260)
T ss_pred             hCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECC
Confidence            23689999999875322   1122   12345555444443    444444333455665554

>PLN00016 RNA-binding protein; Provisional

Probab=97.05  E-value=0.0062  Score=58.03  Aligned_cols=37  Identities=22%  Similarity=0.115  Sum_probs=33.1

Q ss_pred             CCCCEEEEE----cCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           44 SPGFKVAVL----GAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        44 ~~~~KI~II----GaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .+++||.|+    ||+|++|++++..|+..|+  +|++++++.
T Consensus        50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~--~V~~l~R~~   90 (378)
T PLN00016         50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGH--EVTLFTRGK   90 (378)
T ss_pred             cccceEEEEeccCCCceeEhHHHHHHHHHCCC--EEEEEecCC
Confidence            345789999    9999999999999999998  999999876

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=97.04  E-value=0.0097  Score=52.60  Aligned_cols=35  Identities=31%  Similarity=0.289  Sum_probs=31.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .+++.|+|++|.+|+.++..|+..|.  +|+++|.+.
T Consensus         8 ~k~vlItGas~~iG~~la~~l~~~G~--~v~~~~~~~   42 (252)
T PRK08220          8 GKTVWVTGAAQGIGYAVALAFVEAGA--KVIGFDQAF   42 (252)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecch
Confidence            45899999999999999999999997  899998865

>PRK07454 short chain dehydrogenase; Provisional

Probab=97.04  E-value=0.0062  Score=53.63  Aligned_cols=36  Identities=22%  Similarity=0.241  Sum_probs=32.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      +++++.|+|++|.+|..++..|+.+|.  +|+++++++
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~   40 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKAGW--DLALVARSQ   40 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            356899999999999999999999997  899999875

>PRK08177 short chain dehydrogenase; Provisional

Probab=97.04  E-value=0.0086  Score=52.37  Aligned_cols=34  Identities=15%  Similarity=0.064  Sum_probs=31.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      +++.|+|++|.+|+.++..|+..|.  +|+++|+++
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~   35 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGW--QVTATVRGP   35 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCC--EEEEEeCCC
Confidence            4799999999999999999999997  899999876

>PRK12747 short chain dehydrogenase; Provisional

Probab=97.04  E-value=0.037  Score=49.07  Aligned_cols=33  Identities=24%  Similarity=0.290  Sum_probs=28.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV   80 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~   80 (289)
                      .+++.|+|++|.+|.+++..|+..|.  +|++.+.
T Consensus         4 ~k~~lItGas~gIG~~ia~~l~~~G~--~v~~~~~   36 (252)
T PRK12747          4 GKVALVTGASRGIGRAIAKRLANDGA--LVAIHYG   36 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcC
Confidence            45899999999999999999999997  7888754

>PRK12743 oxidoreductase; Provisional

Probab=97.04  E-value=0.038  Score=49.29  Aligned_cols=115  Identities=15%  Similarity=0.137  Sum_probs=63.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-ch--hHHhhhhcccCCceEEEEe-cCCCH---Hh-------h
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TP--GVTADISHMDTNAVVRGFL-GQQQL---ED-------A  111 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~~--g~~~DL~~~~~~~~v~~~~-~t~d~---~e-------a  111 (289)
                      +++|.|+||+|.+|..++..|+..|.  +|++++... ..  ....++....  ..+..+. +-++.   ++       .
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   77 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQQGF--DIGITWHSDEEGAKETAEEVRSHG--VRAEIRQLDLSDLPEGAQALDKLIQR   77 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHH
Confidence            34899999999999999999999997  888776433 11  1122222211  1222111 11121   11       1


Q ss_pred             hCCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHH----HhCCCcEEEEecC
Q 022947          112 LTGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIA----KCCPKAIVNLISN  164 (289)
Q Consensus       112 l~~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~----~~~p~aiviv~tN  164 (289)
                      +...|++|+++|.....   ..+   -.+.+..|+.....+.+.+.    +....+.++++|.
T Consensus        78 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS  140 (256)
T PRK12743         78 LGRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITS  140 (256)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEee
Confidence            24689999999864321   111   12345566555555544433    3333456766665

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=97.03  E-value=0.013  Score=52.51  Aligned_cols=116  Identities=17%  Similarity=0.240  Sum_probs=64.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCCH---Hh-------hh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL---ED-------AL  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~---~e-------al  112 (289)
                      .+++.|+|++|.+|..++..|+..|.  +|++.|.++.  .....++....  .++..+. +-++.   ++       .+
T Consensus        10 ~k~~lItGa~~~iG~~ia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   85 (265)
T PRK07097         10 GKIALITGASYGIGFAIAKAYAKAGA--TIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIEKEV   85 (265)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            35799999999999999999999997  8999987652  11222232211  1222111 11121   11       22


Q ss_pred             CCCCEEEEcCCCCCC-C--CCc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecCCC
Q 022947          113 TGMDIVIIPAGVPRK-P--GMT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPV  166 (289)
Q Consensus       113 ~~aDiVIitag~~~~-~--g~~---r~d~~~~N~~i~----~~i~~~i~~~~p~aiviv~tNPv  166 (289)
                      ...|++|.++|.... +  ..+   -...+..|+...    +.+.+.+.+ ...+.|++++...
T Consensus        86 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~g~iv~isS~~  148 (265)
T PRK07097         86 GVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIK-KGHGKIINICSMM  148 (265)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHh-cCCcEEEEEcCcc
Confidence            457999999986421 1  111   122344555433    344444443 3456677766644

>PRK06057 short chain dehydrogenase; Provisional

Probab=97.02  E-value=0.0069  Score=53.96  Aligned_cols=35  Identities=20%  Similarity=0.250  Sum_probs=31.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .++|.|+||+|.+|..++..+++.|.  +|+++|+++
T Consensus         7 ~~~vlItGasggIG~~~a~~l~~~G~--~v~~~~r~~   41 (255)
T PRK06057          7 GRVAVITGGGSGIGLATARRLAAEGA--TVVVGDIDP   41 (255)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCH
Confidence            46899999999999999999999997  899999876

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=97.02  E-value=0.0037  Score=55.98  Aligned_cols=35  Identities=23%  Similarity=0.271  Sum_probs=31.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .+++.|+|++|.+|..++..|+..|.  +|++.|+++
T Consensus         9 ~k~vlItG~s~gIG~~la~~l~~~G~--~v~~~~~~~   43 (266)
T PRK06171          9 GKIIIVTGGSSGIGLAIVKELLANGA--NVVNADIHG   43 (266)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            35899999999999999999999997  899999876

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=97.02  E-value=0.0057  Score=56.05  Aligned_cols=98  Identities=24%  Similarity=0.292  Sum_probs=62.4

Q ss_pred             EEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhC-CCCEEEEcCCCCCC
Q 022947           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT-GMDIVIIPAGVPRK  127 (289)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~-~aDiVIitag~~~~  127 (289)
                      |+|+|++|+||+++...|...|+  +|..+-+++......  .+.    .+...   +.+.+... ++|+||..||.|--
T Consensus         1 IliTGgTGlIG~~L~~~L~~~gh--~v~iltR~~~~~~~~--~~~----~v~~~---~~~~~~~~~~~DavINLAG~~I~   69 (297)
T COG1090           1 ILITGGTGLIGRALTARLRKGGH--QVTILTRRPPKASQN--LHP----NVTLW---EGLADALTLGIDAVINLAGEPIA   69 (297)
T ss_pred             CeEeccccchhHHHHHHHHhCCC--eEEEEEcCCcchhhh--cCc----ccccc---chhhhcccCCCCEEEECCCCccc
Confidence            67999999999999999999998  899988766221111  111    11111   11223333 79999999997643


Q ss_pred             CC---Cc-hhhHHHhhHHHHHHHHHHHHHhCCCc
Q 022947          128 PG---MT-RDDLFNINAGIVKTLCEGIAKCCPKA  157 (289)
Q Consensus       128 ~g---~~-r~d~~~~N~~i~~~i~~~i~~~~p~a  157 (289)
                      ..   .. ...+..--+...+.+.+.|.+.....
T Consensus        70 ~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P  103 (297)
T COG1090          70 ERRWTEKQKEEIRQSRINTTEKLVELIAASETKP  103 (297)
T ss_pred             cccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCC
Confidence            21   11 23344445677788888888765333

>PRK07478 short chain dehydrogenase; Provisional

Probab=97.02  E-value=0.023  Score=50.44  Aligned_cols=154  Identities=16%  Similarity=0.171  Sum_probs=81.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhh-------h
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------L  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------l  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|++.++++.  .....++....  .++..+. +..+   .++.       +
T Consensus         6 ~k~~lItGas~giG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (254)
T PRK07478          6 GKVAIITGASSGIGRAAAKLFAREGA--KVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVERF   81 (254)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence            35899999999999999999999997  8999998762  22222333221  1122111 1112   2222       2


Q ss_pred             CCCCEEEEcCCCCC--CC--CCc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhC
Q 022947          113 TGMDIVIIPAGVPR--KP--GMT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (289)
Q Consensus       113 ~~aDiVIitag~~~--~~--g~~---r~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~  181 (289)
                      ...|++|.++|...  .+  ..+   -...+..|+.    ..+.+.+.+.+. ..+.+++++......           .
T Consensus        82 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~-~~~~iv~~sS~~~~~-----------~  149 (254)
T PRK07478         82 GGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLAR-GGGSLIFTSTFVGHT-----------A  149 (254)
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCceEEEEechHhhc-----------c
Confidence            36899999998632  12  112   1234566664    444555555543 334555555422110           1


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeee
Q 022947          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVP  217 (289)
Q Consensus       182 ~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~  217 (289)
                      +.+..-.++.+..-...+-+.++++++  +..|++.
T Consensus       150 ~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~  183 (254)
T PRK07478        150 GFPGMAAYAASKAGLIGLTQVLAAEYG--AQGIRVN  183 (254)
T ss_pred             CCCCcchhHHHHHHHHHHHHHHHHHHh--hcCEEEE
Confidence            233333344443333345566666664  3345444

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=97.02  E-value=0.014  Score=51.97  Aligned_cols=115  Identities=19%  Similarity=0.274  Sum_probs=64.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHh-------hh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LED-------AL  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~e-------al  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+++.  .....++.+..  ..+..+. +-.|   .++       .+
T Consensus         9 ~k~~lItGas~giG~~ia~~L~~~G~--~vvl~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (254)
T PRK08085          9 GKNILITGSAQGIGFLLATGLAEYGA--EIIINDITAERAELAVAKLRQEG--IKAHAAPFNVTHKQEVEAAIEHIEKDI   84 (254)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence            45899999999999999999999997  9999998752  22222333221  1111110 1112   111       12


Q ss_pred             CCCCEEEEcCCCCCC-C--CCc---hhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 022947          113 TGMDIVIIPAGVPRK-P--GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (289)
Q Consensus       113 ~~aDiVIitag~~~~-~--g~~---r~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tN  164 (289)
                      ...|+||.++|.... +  ..+   -...+..|+.....+.+.+.++   ...+.++++|.
T Consensus        85 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS  145 (254)
T PRK08085         85 GPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICS  145 (254)
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence            457999999986421 1  111   2234566655544444444432   23355666553

>PRK08628 short chain dehydrogenase; Provisional

Probab=97.01  E-value=0.017  Score=51.33  Aligned_cols=114  Identities=16%  Similarity=0.140  Sum_probs=64.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcccCCceEEEEe-cCC---CHHhhh-------C
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFL-GQQ---QLEDAL-------T  113 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~~~~~~v~~~~-~t~---d~~eal-------~  113 (289)
                      .+++.|+||+|.+|..++..|+..|.  +++++++++. .....++....  .++..+. +-+   ++.+.+       .
T Consensus         7 ~~~ilItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (258)
T PRK08628          7 DKVVIVTGGASGIGAAISLRLAEEGA--IPVIFGRSAPDDEFAEELRALQ--PRAEFVQVDLTDDAQCRDAVEQTVAKFG   82 (258)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHcCC--cEEEEcCChhhHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            35899999999999999999999997  7888888762 21222332211  1222111 111   222223       3


Q ss_pred             CCCEEEEcCCCCCCCCC-----chhhHHHhhHHHHHHHHHHHHHhC--CCcEEEEec
Q 022947          114 GMDIVIIPAGVPRKPGM-----TRDDLFNINAGIVKTLCEGIAKCC--PKAIVNLIS  163 (289)
Q Consensus       114 ~aDiVIitag~~~~~g~-----~r~d~~~~N~~i~~~i~~~i~~~~--p~aiviv~t  163 (289)
                      ..|+||+++|.......     +-.+.+..|+.....+.+.+.++.  ..+.++++|
T Consensus        83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~s  139 (258)
T PRK08628         83 RIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNIS  139 (258)
T ss_pred             CCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEEC
Confidence            67999999986432211     112345666665555555444321  234455444

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=97.01  E-value=0.012  Score=52.49  Aligned_cols=35  Identities=20%  Similarity=0.189  Sum_probs=31.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .++|.|+||+|.+|..++..|+..|.  .|++++.++
T Consensus        15 ~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~~~   49 (258)
T PRK06935         15 GKVAIVTGGNTGLGQGYAVALAKAGA--DIIITTHGT   49 (258)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            46899999999999999999999997  899998864

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.01  E-value=0.0031  Score=51.62  Aligned_cols=76  Identities=21%  Similarity=0.267  Sum_probs=51.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      +..|+.|+|| |-+|..++..|...|. .+|.+++++..+  +.+|........+.... .+++.+.+.++|+||.+.+.
T Consensus        11 ~~~~vlviGa-Gg~ar~v~~~L~~~g~-~~i~i~nRt~~r--a~~l~~~~~~~~~~~~~-~~~~~~~~~~~DivI~aT~~   85 (135)
T PF01488_consen   11 KGKRVLVIGA-GGAARAVAAALAALGA-KEITIVNRTPER--AEALAEEFGGVNIEAIP-LEDLEEALQEADIVINATPS   85 (135)
T ss_dssp             TTSEEEEESS-SHHHHHHHHHHHHTTS-SEEEEEESSHHH--HHHHHHHHTGCSEEEEE-GGGHCHHHHTESEEEE-SST
T ss_pred             CCCEEEEECC-HHHHHHHHHHHHHcCC-CEEEEEECCHHH--HHHHHHHcCccccceee-HHHHHHHHhhCCeEEEecCC
Confidence            4569999998 9999999999999985 579999987522  22222221122333332 24566788999999998655


Q ss_pred             C
Q 022947          125 P  125 (289)
Q Consensus       125 ~  125 (289)
                      +
T Consensus        86 ~   86 (135)
T PF01488_consen   86 G   86 (135)
T ss_dssp             T
T ss_pred             C
Confidence            4

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK09242 tropinone reductase; Provisional

Probab=97.01  E-value=0.027  Score=50.09  Aligned_cols=116  Identities=17%  Similarity=0.175  Sum_probs=64.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC----------HHhhh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ----------LEDAL  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d----------~~eal  112 (289)
                      .+++.|+|++|.+|..++..|+..|.  +|++++++..  .....++.......++..+. +-.+          ..+.+
T Consensus         9 ~k~~lItGa~~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   86 (257)
T PRK09242          9 GQTALITGASKGIGLAIAREFLGLGA--DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW   86 (257)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999997  8999998762  22222332221011222111 1111          12234


Q ss_pred             CCCCEEEEcCCCCCC-C--CCch---hhHHHhhHHHHHHH----HHHHHHhCCCcEEEEecC
Q 022947          113 TGMDIVIIPAGVPRK-P--GMTR---DDLFNINAGIVKTL----CEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       113 ~~aDiVIitag~~~~-~--g~~r---~d~~~~N~~i~~~i----~~~i~~~~p~aiviv~tN  164 (289)
                      ...|+||.++|.... +  ..+.   ...+..|+.....+    .+.+++. +.+.++++|.
T Consensus        87 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~ii~~sS  147 (257)
T PRK09242         87 DGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQH-ASSAIVNIGS  147 (257)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCceEEEECc
Confidence            578999999986321 1  1111   22345565544444    4444433 3455655554

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=97.00  E-value=0.0029  Score=55.87  Aligned_cols=94  Identities=17%  Similarity=0.165  Sum_probs=59.2

Q ss_pred             EEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEE--EecCCCHHhhhCCCCEEEEcCCCCC
Q 022947           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG--FLGQQQLEDALTGMDIVIIPAGVPR  126 (289)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~--~~~t~d~~eal~~aDiVIitag~~~  126 (289)
                      |+|+||+|.+|++++..|+..++  +|..+=++........|.+..  ..+..  +....++.++++|+|.||++.+...
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~--~V~~l~R~~~~~~~~~l~~~g--~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~   76 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGF--SVRALVRDPSSDRAQQLQALG--AEVVEADYDDPESLVAALKGVDAVFSVTPPSH   76 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTG--CEEEEESSSHHHHHHHHHHTT--TEEEES-TT-HHHHHHHHTTCSEEEEESSCSC
T ss_pred             CEEECCccHHHHHHHHHHHhCCC--CcEEEEeccchhhhhhhhccc--ceEeecccCCHHHHHHHHcCCceEEeecCcch
Confidence            78999999999999999998776  777776665222233333322  11111  1112356778999999999866432


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHHhCCC
Q 022947          127 KPGMTRDDLFNINAGIVKTLCEGIAKCCPK  156 (289)
Q Consensus       127 ~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~  156 (289)
                         .       .-.+..+.+++..++.+-+
T Consensus        77 ---~-------~~~~~~~~li~Aa~~agVk   96 (233)
T PF05368_consen   77 ---P-------SELEQQKNLIDAAKAAGVK   96 (233)
T ss_dssp             ---C-------CHHHHHHHHHHHHHHHT-S
T ss_pred             ---h-------hhhhhhhhHHHhhhccccc
Confidence               1       1234456677777776633

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=97.00  E-value=0.0064  Score=56.42  Aligned_cols=114  Identities=12%  Similarity=0.037  Sum_probs=64.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal-------  112 (289)
                      +++|.|+||+|.+|..++..|+..|.  +|++++++..  .....++...  ...+..+. +-.|   .++.+       
T Consensus         6 ~k~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   81 (322)
T PRK07453          6 KGTVIITGASSGVGLYAAKALAKRGW--HVIMACRNLKKAEAAAQELGIP--PDSYTIIHIDLGDLDSVRRFVDDFRALG   81 (322)
T ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhcc--CCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence            45799999999999999999999996  8999998752  2222223211  11222111 1112   22222       


Q ss_pred             CCCCEEEEcCCCCCC----CCCc---hhhHHHhhHHH----HHHHHHHHHHhCC-CcEEEEec
Q 022947          113 TGMDIVIIPAGVPRK----PGMT---RDDLFNINAGI----VKTLCEGIAKCCP-KAIVNLIS  163 (289)
Q Consensus       113 ~~aDiVIitag~~~~----~g~~---r~d~~~~N~~i----~~~i~~~i~~~~p-~aiviv~t  163 (289)
                      ...|++|..||....    ...+   -...+..|...    .+.+.+.+++... .+.|+++|
T Consensus        82 ~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vs  144 (322)
T PRK07453         82 KPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILG  144 (322)
T ss_pred             CCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEc
Confidence            248999999986321    1112   12345666654    4444555544432 24555554

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=97.00  E-value=0.0041  Score=56.49  Aligned_cols=69  Identities=12%  Similarity=0.251  Sum_probs=44.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhh------CC-CCEEEE
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL------TG-MDIVII  120 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal------~~-aDiVIi  120 (289)
                      ||.|+||+|++|+.++..|+..|+  +|..+.++...........    ... .+...+++.+++      ++ +|.|++
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~--~V~~~~R~~~~~~~~~~~~----~~~-d~~d~~~l~~a~~~~~~~~g~~d~v~~   73 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASV--PFLVASRSSSSSAGPNEKH----VKF-DWLDEDTWDNPFSSDDGMEPEISAVYL   73 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCC--cEEEEeCCCccccCCCCcc----ccc-cCCCHHHHHHHHhcccCcCCceeEEEE
Confidence            589999999999999999999887  8999988762111000000    000 111223455666      67 999998


Q ss_pred             cCC
Q 022947          121 PAG  123 (289)
Q Consensus       121 tag  123 (289)
                      +++
T Consensus        74 ~~~   76 (285)
T TIGR03649        74 VAP   76 (285)
T ss_pred             eCC
Confidence            865

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=97.00  E-value=0.0031  Score=58.42  Aligned_cols=63  Identities=17%  Similarity=0.318  Sum_probs=46.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      |||++||. |.+|+.++..|...|+  +|.++|+++.   ..++....    ...   ..+..++.++||+||++.
T Consensus         1 m~Ig~IGl-G~MG~~ma~~L~~~G~--~v~v~~~~~~---~~~~~~~g----~~~---~~s~~~~~~~advVi~~v   63 (292)
T PRK15059          1 MKLGFIGL-GIMGTPMAINLARAGH--QLHVTTIGPV---ADELLSLG----AVS---VETARQVTEASDIIFIMV   63 (292)
T ss_pred             CeEEEEcc-CHHHHHHHHHHHHCCC--eEEEEeCCHh---HHHHHHcC----Cee---cCCHHHHHhcCCEEEEeC
Confidence            58999998 9999999999999997  8889998652   12222211    111   124567789999999985

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=96.99  E-value=0.013  Score=51.14  Aligned_cols=115  Identities=23%  Similarity=0.293  Sum_probs=64.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc---hhHHhhhhcccCCceEEEEe-cCCC---HHhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------  111 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~---~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------  111 (289)
                      .++|.|+|++|++|+.++..|+..|.  +|+++..+..   .....++....  ..+..+. +-.+   +.++       
T Consensus         5 ~~~vlItG~sg~iG~~l~~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   80 (248)
T PRK05557          5 GKVALVTGASRGIGRAIAERLAAQGA--NVVINYASSEAGAEALVAEIGALG--GKALAVQGDVSDAESVERAVDEAKAE   80 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999999987  7867765542   11112222111  1222111 1111   2122       


Q ss_pred             hCCCCEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHhC---CCcEEEEecC
Q 022947          112 LTGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIAKCC---PKAIVNLISN  164 (289)
Q Consensus       112 l~~aDiVIitag~~~~~---g~~r---~d~~~~N~~i~~~i~~~i~~~~---p~aiviv~tN  164 (289)
                      +.+.|.||+++|.....   ..+.   ...+..|+.....+.+.+.++.   +...++++|.
T Consensus        81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss  142 (248)
T PRK05557         81 FGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISS  142 (248)
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence            24689999999864321   1111   1234566666666666665542   2345555554

>TIGR02415 23BDH acetoin reductases

Probab=96.99  E-value=0.019  Score=50.81  Aligned_cols=112  Identities=18%  Similarity=0.283  Sum_probs=63.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhh-------hCC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------LTG  114 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------l~~  114 (289)
                      ++.|+|++|.+|..++..|++.|.  +|++++.++.  .....++....  ..+..+. +-.|   +.+.       +..
T Consensus         2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~   77 (254)
T TIGR02415         2 VALVTGGAQGIGKGIAERLAKDGF--AVAVADLNEETAKETAKEINQAG--GKAVAYKLDVSDKDQVFSAIDQAAEKFGG   77 (254)
T ss_pred             EEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            689999999999999999999997  8999988652  11222232211  1222111 1112   2122       235


Q ss_pred             CCEEEEcCCCCCC-C--CCchh---hHHHhhHH----HHHHHHHHHHHhCCCcEEEEec
Q 022947          115 MDIVIIPAGVPRK-P--GMTRD---DLFNINAG----IVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       115 aDiVIitag~~~~-~--g~~r~---d~~~~N~~----i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      .|+||+++|.... +  +.+..   ..+..|+.    +++.+.+.+++....+.++++|
T Consensus        78 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~s  136 (254)
T TIGR02415        78 FDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAA  136 (254)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence            7999999986421 1  22222   23455554    3344555555555445666554

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=96.98  E-value=0.041  Score=48.92  Aligned_cols=115  Identities=18%  Similarity=0.200  Sum_probs=64.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HH-------hhh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LE-------DAL  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~-------eal  112 (289)
                      .++|.|+|++|.+|..++..|+..|.  +++++|.+..  .....++.+..  .++..+. +-.+   ..       +.+
T Consensus        11 ~k~vlVtG~s~gIG~~la~~l~~~G~--~vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~   86 (255)
T PRK06113         11 GKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFALSKL   86 (255)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999999997  8999987652  11222332211  1111110 1111   11       223


Q ss_pred             CCCCEEEEcCCCCCC--CCCchh---hHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 022947          113 TGMDIVIIPAGVPRK--PGMTRD---DLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (289)
Q Consensus       113 ~~aDiVIitag~~~~--~g~~r~---d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tN  164 (289)
                      ...|++|+++|....  ...+..   +.+..|+.....+.+.+..+   ...+.++++|.
T Consensus        87 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS  146 (255)
T PRK06113         87 GKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITS  146 (255)
T ss_pred             CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEec
Confidence            467999999986321  122222   23566766555555554422   22345555554

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=96.98  E-value=0.0076  Score=56.46  Aligned_cols=91  Identities=18%  Similarity=0.259  Sum_probs=60.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      .++|+|+|. |.+|+.++..|...|.  +|..+|......  ....      .   +....++++.+++||+|+++....
T Consensus       136 g~tvgIvG~-G~IG~~vA~~l~afG~--~V~~~~~~~~~~--~~~~------~---~~~~~~l~e~l~~aDvvv~~lPlt  201 (312)
T PRK15469        136 DFTIGILGA-GVLGSKVAQSLQTWGF--PLRCWSRSRKSW--PGVQ------S---FAGREELSAFLSQTRVLINLLPNT  201 (312)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCCCCC--CCce------e---ecccccHHHHHhcCCEEEECCCCC
Confidence            469999998 9999999999998887  899999754110  0000      0   001235789999999999985311


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                                 ..+..++.  .+.+.+..|.+++|+++
T Consensus       202 -----------~~T~~li~--~~~l~~mk~ga~lIN~a  226 (312)
T PRK15469        202 -----------PETVGIIN--QQLLEQLPDGAYLLNLA  226 (312)
T ss_pred             -----------HHHHHHhH--HHHHhcCCCCcEEEECC
Confidence                       11222222  33455556899999985

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=96.98  E-value=0.0065  Score=54.14  Aligned_cols=96  Identities=19%  Similarity=0.302  Sum_probs=66.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCC-CccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g-~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      +||+|||+ |.+|..+...+.... -+.-+.++|.+..+  +.++......+.      .+++.+.+.+.|++|.+|+  
T Consensus         1 l~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~ek--~~~~~~~~~~~~------~s~ide~~~~~DlvVEaAS--   69 (255)
T COG1712           1 LKVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDEEK--AKELEASVGRRC------VSDIDELIAEVDLVVEAAS--   69 (255)
T ss_pred             CeEEEEec-cHHHHHHHHHHhcCCcceeEEEEecCCHHH--HHHHHhhcCCCc------cccHHHHhhccceeeeeCC--
Confidence            58999998 999999987776553 35667888887532  233333221111      1356677799999999974  


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 022947          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (289)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd  167 (289)
                                    .+.+++++.++-+.+.|.+|+-++-=+|
T Consensus        70 --------------~~Av~e~~~~~L~~g~d~iV~SVGALad   97 (255)
T COG1712          70 --------------PEAVREYVPKILKAGIDVIVMSVGALAD   97 (255)
T ss_pred             --------------HHHHHHHhHHHHhcCCCEEEEechhccC
Confidence                          5678888888888888888876654444

>PRK07035 short chain dehydrogenase; Provisional

Probab=96.98  E-value=0.012  Score=52.14  Aligned_cols=34  Identities=24%  Similarity=0.212  Sum_probs=31.1

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      ++|.|+|++|.+|..++..|+..|.  .|+++|++.
T Consensus         9 k~vlItGas~gIG~~l~~~l~~~G~--~Vi~~~r~~   42 (252)
T PRK07035          9 KIALVTGASRGIGEAIAKLLAQQGA--HVIVSSRKL   42 (252)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4799999999999999999999997  899999875

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=96.98  E-value=0.0043  Score=57.20  Aligned_cols=203  Identities=18%  Similarity=0.196  Sum_probs=110.1

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhC--CCCEEEEcCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVIIPAGV  124 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~--~aDiVIitag~  124 (289)
                      |||.|+|++|++|+.+...|. .+.  +|+-.|..+     +|+.+..            .+.+.++  .-|+||.||..
T Consensus         1 M~iLi~G~~GqLG~~L~~~l~-~~~--~v~a~~~~~-----~Ditd~~------------~v~~~i~~~~PDvVIn~AAy   60 (281)
T COG1091           1 MKILITGANGQLGTELRRALP-GEF--EVIATDRAE-----LDITDPD------------AVLEVIRETRPDVVINAAAY   60 (281)
T ss_pred             CcEEEEcCCChHHHHHHHHhC-CCc--eEEeccCcc-----ccccChH------------HHHHHHHhhCCCEEEECccc
Confidence            579999999999999988776 444  777777643     4444432            1334455  45999999986


Q ss_pred             CCC--CCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec-CCC--ccc-HHHHHHHHHHhCCCCCCcEEEeeeccHHH
Q 022947          125 PRK--PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS-NPV--NST-VPIAAEVFKKVGTYDPKRLLGVTMLDVVR  198 (289)
Q Consensus       125 ~~~--~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t-NPv--d~~-t~~~~~~~~~~~~~~~~kviG~t~lds~R  198 (289)
                      ..-  ...+++.-+..|......+++...+++  +++|.+| --|  ..- .+     +++.---.|-.+.|-+.+-...
T Consensus        61 t~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~g--a~lVhiSTDyVFDG~~~~~-----Y~E~D~~~P~nvYG~sKl~GE~  133 (281)
T COG1091          61 TAVDKAESEPELAFAVNATGAENLARAAAEVG--ARLVHISTDYVFDGEKGGP-----YKETDTPNPLNVYGRSKLAGEE  133 (281)
T ss_pred             cccccccCCHHHHHHhHHHHHHHHHHHHHHhC--CeEEEeecceEecCCCCCC-----CCCCCCCCChhhhhHHHHHHHH
Confidence            432  233456667889999999999988874  4444443 222  000 00     0000013345566665443221


Q ss_pred             HHHHHHHHcCCCCccee-eeEEcccCCCeeeeecccccCCC-----------CCChhhHHHHHHHHHhhhHH--HhhhcC
Q 022947          199 ANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPSC-----------SLTPTEIDYLTDRIQNGGTE--VVEAKT  264 (289)
Q Consensus       199 ~~~~lA~~l~v~~~~V~-~~V~G~hg~~~~vp~~S~~~v~~-----------~~~~~~~~~i~~~v~~~g~~--i~~~k~  264 (289)
                          ..+..+-..-=++ .+|.|++|.+...+.+..+.-+.           +.+-.++.+.+.++-....+  ++.+- 
T Consensus       134 ----~v~~~~~~~~I~Rtswv~g~~g~nFv~tml~la~~~~~l~vv~Dq~gsPt~~~dlA~~i~~ll~~~~~~~~yH~~-  208 (281)
T COG1091         134 ----AVRAAGPRHLILRTSWVYGEYGNNFVKTMLRLAKEGKELKVVDDQYGSPTYTEDLADAILELLEKEKEGGVYHLV-  208 (281)
T ss_pred             ----HHHHhCCCEEEEEeeeeecCCCCCHHHHHHHHhhcCCceEEECCeeeCCccHHHHHHHHHHHHhccccCcEEEEe-
Confidence                1222221222224 88999999732234455444321           22333443333332222211  33321 


Q ss_pred             CCC-cchHHHHHHHHHHH
Q 022947          265 GAG-SATLSMCRHMLLPS  281 (289)
Q Consensus       265 g~g-~t~~s~A~a~~~~~  281 (289)
                      +.| ++.|-.|..+.+..
T Consensus       209 ~~g~~Swydfa~~I~~~~  226 (281)
T COG1091         209 NSGECSWYEFAKAIFEEA  226 (281)
T ss_pred             CCCcccHHHHHHHHHHHh
Confidence            333 36777777777654

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=96.97  E-value=0.0086  Score=54.87  Aligned_cols=97  Identities=16%  Similarity=0.228  Sum_probs=64.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCC-C-ccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINP-L-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g-~-~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      ++||++||+ |.+|..++..|...+ + ..+|+..|+++...  .++....  . +..   +++..++...+|+||++. 
T Consensus         1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~--~~l~~~~--g-~~~---~~~~~~~~~~advv~Lav-   70 (266)
T COG0345           1 MMKIGFIGA-GNMGEAILSGLLKSGALPPEEIIVTNRSEEKR--AALAAEY--G-VVT---TTDNQEAVEEADVVFLAV-   70 (266)
T ss_pred             CceEEEEcc-CHHHHHHHHHHHhcCCCCcceEEEeCCCHHHH--HHHHHHc--C-Ccc---cCcHHHHHhhCCEEEEEe-
Confidence            479999999 999999999999888 2 35888887765221  1233221  1 111   235568889999999986 


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd  167 (289)
                         ||            ..+.++++.++...++-+||-+.=.+.
T Consensus        71 ---KP------------q~~~~vl~~l~~~~~~~lvISiaAGv~   99 (266)
T COG0345          71 ---KP------------QDLEEVLSKLKPLTKDKLVISIAAGVS   99 (266)
T ss_pred             ---Ch------------HhHHHHHHHhhcccCCCEEEEEeCCCC
Confidence               33            236667777776445666666555553

>PRK07577 short chain dehydrogenase; Provisional

Probab=96.97  E-value=0.0052  Score=53.71  Aligned_cols=35  Identities=23%  Similarity=0.137  Sum_probs=31.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .++|.|+|++|.+|..++..|+..|.  +|++++++.
T Consensus         3 ~k~vlItG~s~~iG~~ia~~l~~~G~--~v~~~~r~~   37 (234)
T PRK07577          3 SRTVLVTGATKGIGLALSLRLANLGH--QVIGIARSA   37 (234)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            35899999999999999999999997  899999875

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=96.96  E-value=0.028  Score=50.67  Aligned_cols=35  Identities=17%  Similarity=0.234  Sum_probs=31.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|++.
T Consensus        10 ~k~vlVtGas~giG~~ia~~l~~~G~--~V~~~~r~~   44 (278)
T PRK08277         10 GKVAVITGGGGVLGGAMAKELARAGA--KVAILDRNQ   44 (278)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            45899999999999999999999998  899999875

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=96.96  E-value=0.019  Score=50.70  Aligned_cols=33  Identities=24%  Similarity=0.274  Sum_probs=28.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV   80 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~   80 (289)
                      +++|.|+||+|.+|+.++..|+..|.  +|++.+.
T Consensus         2 ~k~ilItGas~giG~~la~~l~~~g~--~v~~~~~   34 (248)
T PRK06947          2 RKVVLITGASRGIGRATAVLAAARGW--SVGINYA   34 (248)
T ss_pred             CcEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeC
Confidence            45899999999999999999999987  7777653

>PLN02780 ketoreductase/ oxidoreductase

Probab=96.96  E-value=0.0093  Score=55.80  Aligned_cols=116  Identities=18%  Similarity=0.228  Sum_probs=65.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCceEEEE--ecCCC-------HHhhhC-
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGF--LGQQQ-------LEDALT-  113 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~--~~t~d-------~~eal~-  113 (289)
                      .+.+.|+||+|.+|..++..|+..|.  +|+++++++  .+....++........+..+  ..+++       +.+.+. 
T Consensus        53 g~~~lITGAs~GIG~alA~~La~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~  130 (320)
T PLN02780         53 GSWALVTGPTDGIGKGFAFQLARKGL--NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEG  130 (320)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcC
Confidence            35899999999999999999999997  899999986  22223334321101122111  11111       122333 


Q ss_pred             -CCCEEEEcCCCCCC---C--CCch---hhHHHhhHHHHHHHH----HHHHHhCCCcEEEEecC
Q 022947          114 -GMDIVIIPAGVPRK---P--GMTR---DDLFNINAGIVKTLC----EGIAKCCPKAIVNLISN  164 (289)
Q Consensus       114 -~aDiVIitag~~~~---~--g~~r---~d~~~~N~~i~~~i~----~~i~~~~p~aiviv~tN  164 (289)
                       +.|++|..||....   +  ..+.   .+.+..|+.....+.    +.+.+. ..+.|+++|.
T Consensus       131 ~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~-~~g~IV~iSS  193 (320)
T PLN02780        131 LDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKR-KKGAIINIGS  193 (320)
T ss_pred             CCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhc-CCcEEEEEec
Confidence             45599999987421   1  1111   234566665444444    444433 3455666554

>PRK12744 short chain dehydrogenase; Provisional

Probab=96.96  E-value=0.029  Score=49.97  Aligned_cols=152  Identities=14%  Similarity=0.113  Sum_probs=77.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhH----HhhhhcccCCceEEEEe-cCCC---HHhh-----
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGV----TADISHMDTNAVVRGFL-GQQQ---LEDA-----  111 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~----~~DL~~~~~~~~v~~~~-~t~d---~~ea-----  111 (289)
                      +++.|+|++|.+|..++..|+..|.  ++++++.+.  ....    ..++....  .++..+. +-++   .++.     
T Consensus         9 k~vlItGa~~gIG~~~a~~l~~~G~--~vv~i~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~   84 (257)
T PRK12744          9 KVVLIAGGAKNLGGLIARDLAAQGA--KAVAIHYNSAASKADAEETVAAVKAAG--AKAVAFQADLTTAAAVEKLFDDAK   84 (257)
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCC--cEEEEecCCccchHHHHHHHHHHHHhC--CcEEEEecCcCCHHHHHHHHHHHH
Confidence            5899999999999999999999887  766666432  1111    11222111  1222111 1112   2222     


Q ss_pred             --hCCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEe-cCCCcccHHHHHHHHHHhC
Q 022947          112 --LTGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLI-SNPVNSTVPIAAEVFKKVG  181 (289)
Q Consensus       112 --l~~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~-tNPvd~~t~~~~~~~~~~~  181 (289)
                        +...|++|+++|.....   ..+   -...+..|+.....+++.+.+.. +.+.++++ +......            
T Consensus        85 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~~------------  152 (257)
T PRK12744         85 AAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGAF------------  152 (257)
T ss_pred             HhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhccc------------
Confidence              24689999999864211   111   22345567665555555554332 33444433 3222110            


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeee
Q 022947          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVP  217 (289)
Q Consensus       182 ~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~  217 (289)
                       .|....++.+......+-+.++++++  +..|++.
T Consensus       153 -~~~~~~Y~~sK~a~~~~~~~la~e~~--~~~i~v~  185 (257)
T PRK12744        153 -TPFYSAYAGSKAPVEHFTRAASKEFG--ARGISVT  185 (257)
T ss_pred             -CCCcccchhhHHHHHHHHHHHHHHhC--cCceEEE
Confidence             12223345544334456677788775  3344433

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.95  E-value=0.013  Score=51.23  Aligned_cols=108  Identities=20%  Similarity=0.183  Sum_probs=62.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEec-C----CCHHhhhCCCCEEEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-Q----QQLEDALTGMDIVII  120 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~-t----~d~~eal~~aDiVIi  120 (289)
                      .+++.|+|++|.+|..++..|++.|.  +|+++|++....    ..     ..+..+.. -    ....+.+...|++|.
T Consensus         5 ~k~~lVtGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~----~~-----~~~~~~~~D~~~~~~~~~~~~~~id~lv~   73 (235)
T PRK06550          5 TKTVLITGAASGIGLAQARAFLAQGA--QVYGVDKQDKPD----LS-----GNFHFLQLDLSDDLEPLFDWVPSVDILCN   73 (235)
T ss_pred             CCEEEEcCCCchHHHHHHHHHHHCCC--EEEEEeCCcccc----cC-----CcEEEEECChHHHHHHHHHhhCCCCEEEE
Confidence            35899999999999999999999997  899999865211    00     01111100 0    111233567899999


Q ss_pred             cCCCCCC--C--CCch---hhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 022947          121 PAGVPRK--P--GMTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (289)
Q Consensus       121 tag~~~~--~--g~~r---~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tN  164 (289)
                      ++|....  +  ..+.   ...+..|+.....+.+.+...   .+.+.+++++.
T Consensus        74 ~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  127 (235)
T PRK06550         74 TAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCS  127 (235)
T ss_pred             CCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcC
Confidence            9986421  1  1111   234566665544444444322   23355655553

>PRK09186 flagellin modification protein A; Provisional

Probab=96.95  E-value=0.015  Score=51.55  Aligned_cols=36  Identities=22%  Similarity=0.253  Sum_probs=32.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      +.++|.|+||+|.+|..++..|+..|.  +|++.++++
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~~g~--~v~~~~r~~   38 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILEAGG--IVIAADIDK   38 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecCh
Confidence            346899999999999999999999997  899998865

>PRK07060 short chain dehydrogenase; Provisional

Probab=96.94  E-value=0.0088  Score=52.56  Aligned_cols=115  Identities=19%  Similarity=0.191  Sum_probs=64.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEE-EEecCCCHHhhh---CCCCEEEEc
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLEDAL---TGMDIVIIP  121 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~-~~~~t~d~~eal---~~aDiVIit  121 (289)
                      .+++.|+|++|.+|..++..|+..|.  +|++++++...  ..++........+. ......++.+.+   ...|+||.+
T Consensus         9 ~~~~lItGa~g~iG~~~a~~l~~~g~--~V~~~~r~~~~--~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~vi~~   84 (245)
T PRK07060          9 GKSVLVTGASSGIGRACAVALAQRGA--RVVAAARNAAA--LDRLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGLVNC   84 (245)
T ss_pred             CCEEEEeCCcchHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEEEEC
Confidence            45899999999999999999999997  89999986521  11121110000111 111111222333   358999999


Q ss_pred             CCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHh----CCCcEEEEecC
Q 022947          122 AGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKC----CPKAIVNLISN  164 (289)
Q Consensus       122 ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~----~p~aiviv~tN  164 (289)
                      +|.....   ..+   -.+.+..|+.....+.+.+.+.    +..+.++++|.
T Consensus        85 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS  137 (245)
T PRK07060         85 AGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSS  137 (245)
T ss_pred             CCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEcc
Confidence            9864321   111   1234456766665565555543    22356666553

>PRK05855 short chain dehydrogenase; Validated

Probab=96.94  E-value=0.012  Score=58.32  Aligned_cols=117  Identities=19%  Similarity=0.187  Sum_probs=67.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCCH---Hhh-------
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL---EDA-------  111 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~---~ea-------  111 (289)
                      +.+++.|+||+|.+|..++..|+..|.  +|++++++..  .....++....  ..+..+. +-+|.   ++.       
T Consensus       314 ~~~~~lv~G~s~giG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~  389 (582)
T PRK05855        314 SGKLVVVTGAGSGIGRETALAFAREGA--EVVASDIDEAAAERTAELIRAAG--AVAHAYRVDVSDADAMEAFAEWVRAE  389 (582)
T ss_pred             CCCEEEEECCcCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHh
Confidence            356899999999999999999999998  8999998762  22222232211  1111111 11121   111       


Q ss_pred             hCCCCEEEEcCCCCCCC---CCch---hhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecCC
Q 022947          112 LTGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       112 l~~aDiVIitag~~~~~---g~~r---~d~~~~N~~i~----~~i~~~i~~~~p~aiviv~tNP  165 (289)
                      +...|++|.+||.....   ..+.   ...+..|+...    +.+.+.+.+....+.|+++|.-
T Consensus       390 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~  453 (582)
T PRK05855        390 HGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASA  453 (582)
T ss_pred             cCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECCh
Confidence            23579999999975321   1111   22345665444    4445555555555677776643

>PRK05867 short chain dehydrogenase; Provisional

Probab=96.93  E-value=0.01  Score=52.87  Aligned_cols=114  Identities=19%  Similarity=0.220  Sum_probs=64.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHh-------hh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LED-------AL  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~e-------al  112 (289)
                      .+++.|+|++|.+|..++..|+..|.  +|++.+++..  +....++....  .++..+. +-+|   ..+       .+
T Consensus         9 ~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (253)
T PRK05867          9 GKRALITGASTGIGKRVALAYVEAGA--QVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAEL   84 (253)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            35799999999999999999999997  8999998762  22222222211  1222111 1112   212       23


Q ss_pred             CCCCEEEEcCCCCCCC---CCch---hhHHHhhHHHH----HHHHHHHHHhCCCcEEEEec
Q 022947          113 TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIV----KTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       113 ~~aDiVIitag~~~~~---g~~r---~d~~~~N~~i~----~~i~~~i~~~~p~aiviv~t  163 (289)
                      ...|++|+++|.....   ..+.   .+.+..|+...    +.+.+.+.+....+.+++++
T Consensus        85 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~s  145 (253)
T PRK05867         85 GGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTA  145 (253)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence            4789999999864321   1111   22345565544    34444444433345566554

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=96.92  E-value=0.007  Score=62.83  Aligned_cols=92  Identities=21%  Similarity=0.341  Sum_probs=60.4

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch-hHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~-g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      +||+|||+ |.+|..++..+...|+..+|+.+|+++.. ..+.++.   .  ...   ..+++.++++++|+||++... 
T Consensus         4 ~~I~IIG~-G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g---~--~~~---~~~~~~~~~~~aDvVilavp~-   73 (735)
T PRK14806          4 GRVVVIGL-GLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLG---V--IDR---GEEDLAEAVSGADVIVLAVPV-   73 (735)
T ss_pred             cEEEEEee-CHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCC---C--CCc---ccCCHHHHhcCCCEEEECCCH-
Confidence            58999998 99999999999988854479999987622 1122211   0  000   123566789999999998531 


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEec
Q 022947          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS  163 (289)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~t  163 (289)
                                     ..+.++++.+.++. ++.+|+.++
T Consensus        74 ---------------~~~~~vl~~l~~~~~~~~ii~d~~   97 (735)
T PRK14806         74 ---------------LAMEKVLADLKPLLSEHAIVTDVG   97 (735)
T ss_pred             ---------------HHHHHHHHHHHHhcCCCcEEEEcC
Confidence                           23456666666654 555554443

>PRK05884 short chain dehydrogenase; Provisional

Probab=96.92  E-value=0.0053  Score=54.01  Aligned_cols=34  Identities=18%  Similarity=0.223  Sum_probs=31.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      ||+.|+||+|.+|..++..|+..|.  +|+++++++
T Consensus         1 m~vlItGas~giG~~ia~~l~~~g~--~v~~~~r~~   34 (223)
T PRK05884          1 VEVLVTGGDTDLGRTIAEGFRNDGH--KVTLVGARR   34 (223)
T ss_pred             CeEEEEeCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            5899999999999999999999997  899999875

>PRK06949 short chain dehydrogenase; Provisional

Probab=96.91  E-value=0.012  Score=52.17  Aligned_cols=35  Identities=23%  Similarity=0.238  Sum_probs=31.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .++|.|+||+|.+|+.++..|+..|.  +|+++++++
T Consensus         9 ~k~ilItGasg~IG~~~a~~l~~~G~--~Vi~~~r~~   43 (258)
T PRK06949          9 GKVALVTGASSGLGARFAQVLAQAGA--KVVLASRRV   43 (258)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            46899999999999999999999887  899998875

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.90  E-value=0.0074  Score=52.87  Aligned_cols=35  Identities=23%  Similarity=0.350  Sum_probs=31.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .++|.|+|++|.+|+.++..|+..|.  +|+++++++
T Consensus         5 ~~~vlItGa~g~iG~~~a~~l~~~G~--~V~~~~r~~   39 (238)
T PRK05786          5 GKKVAIIGVSEGLGYAVAYFALKEGA--QVCINSRNE   39 (238)
T ss_pred             CcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            35899999999999999999999998  899999876

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=96.90  E-value=0.0083  Score=56.63  Aligned_cols=67  Identities=18%  Similarity=0.164  Sum_probs=46.6

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      .+.+||+|||. |.+|.+++..|...|+  +|+..+.+....  .+.....   .+..    .+..+++++||+|+++.
T Consensus        15 L~gktIgIIG~-GsmG~AlA~~L~~sG~--~Vvv~~r~~~~s--~~~A~~~---G~~~----~s~~eaa~~ADVVvLaV   81 (330)
T PRK05479         15 IKGKKVAIIGY-GSQGHAHALNLRDSGV--DVVVGLREGSKS--WKKAEAD---GFEV----LTVAEAAKWADVIMILL   81 (330)
T ss_pred             hCCCEEEEEee-HHHHHHHHHHHHHCCC--EEEEEECCchhh--HHHHHHC---CCee----CCHHHHHhcCCEEEEcC
Confidence            34568999998 9999999999999998  888877654211  1111111   1111    25678999999999985

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=96.89  E-value=0.073  Score=47.48  Aligned_cols=115  Identities=15%  Similarity=0.153  Sum_probs=64.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc---hhHHhhhhcccCCceEEEE-ecCCCH---Hhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGF-LGQQQL---EDA-------  111 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~---~g~~~DL~~~~~~~~v~~~-~~t~d~---~ea-------  111 (289)
                      .+++.|+||+|.+|..++..|+..|.  .+++...+..   .....++....  .++..+ .+.+|.   .+.       
T Consensus         7 ~k~~lItGa~~gIG~~ia~~l~~~G~--~vvi~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~~   82 (261)
T PRK08936          7 GKVVVITGGSTGLGRAMAVRFGKEKA--KVVINYRSDEEEANDVAEEIKKAG--GEAIAVKGDVTVESDVVNLIQTAVKE   82 (261)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CeEEEEEecCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999999997  7777766431   11122232211  122111 011222   111       


Q ss_pred             hCCCCEEEEcCCCCCCC---CCchh---hHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 022947          112 LTGMDIVIIPAGVPRKP---GMTRD---DLFNINAG----IVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       112 l~~aDiVIitag~~~~~---g~~r~---d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      +...|++|+.+|.....   ..+..   ..+..|+.    ..+.+.+.+.+....+.++++|.
T Consensus        83 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS  145 (261)
T PRK08936         83 FGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSS  145 (261)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence            23579999999864321   11111   23556644    33455566665555566666654

>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]

Probab=96.89  E-value=0.011  Score=54.75  Aligned_cols=168  Identities=17%  Similarity=0.134  Sum_probs=95.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhH---HhhhhcccCCceEEE-EecCCCHHhhhC--CCCEEEE
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV---TADISHMDTNAVVRG-FLGQQQLEDALT--GMDIVII  120 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~---~~DL~~~~~~~~v~~-~~~t~d~~eal~--~aDiVIi  120 (289)
                      |++.|+|++||+|+++...+.....-.+|+.+|.-.-.|.   ..++.+.....-++. +.....+.+.++  +.|.|+.
T Consensus         1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~Vvh   80 (340)
T COG1088           1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVH   80 (340)
T ss_pred             CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCCCceEEeccccCHHHHHHHHHhcCCCeEEE
Confidence            5899999999999999987777665467888987551222   233444321112222 111122334455  6899999


Q ss_pred             cCCCCC--CCCCchhhHHHhhHHHHHHHHHHHHHhCCC-cEEEEecCCCc-ccHHHHHHHHHHhCCCCCCcEEEeeeccH
Q 022947          121 PAGVPR--KPGMTRDDLFNINAGIVKTLCEGIAKCCPK-AIVNLISNPVN-STVPIAAEVFKKVGTYDPKRLLGVTMLDV  196 (289)
Q Consensus       121 tag~~~--~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~-aiviv~tNPvd-~~t~~~~~~~~~~~~~~~~kviG~t~lds  196 (289)
                      .|.-.-  +.=..-.++++.|+-....+.+.++++... -++-+.|.-|= -+..- -..+-+.+.+.|+.-..-+.-.+
T Consensus        81 fAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~-~~~FtE~tp~~PsSPYSASKAas  159 (340)
T COG1088          81 FAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLD-DDAFTETTPYNPSSPYSASKAAS  159 (340)
T ss_pred             echhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCC-CCCcccCCCCCCCCCcchhhhhH
Confidence            875321  000112568889999999999999999754 34444443220 00000 00011234577776666543333


Q ss_pred             HHHHHHHHHHcCCCCccee
Q 022947          197 VRANTFVAEVLGLDPREVD  215 (289)
Q Consensus       197 ~R~~~~lA~~l~v~~~~V~  215 (289)
                      --|-+...+-+|++..-.+
T Consensus       160 D~lVray~~TYglp~~Itr  178 (340)
T COG1088         160 DLLVRAYVRTYGLPATITR  178 (340)
T ss_pred             HHHHHHHHHHcCCceEEec
Confidence            3345555677787654444

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.88  E-value=0.011  Score=52.66  Aligned_cols=115  Identities=11%  Similarity=0.141  Sum_probs=63.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhh-------hCCCCEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDA-------LTGMDIV  118 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~ea-------l~~aDiV  118 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|++.+.... ....++.+..............+.+++       +...|++
T Consensus         7 ~k~~lItGas~gIG~~~a~~l~~~G~--~v~~~~~~~~-~~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~l   83 (255)
T PRK06463          7 GKVALITGGTRGIGRAIAEAFLREGA--KVAVLYNSAE-NEAKELREKGVFTIKCDVGNRDQVKKSKEVVEKEFGRVDVL   83 (255)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCcH-HHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            35899999999999999999999997  7888765431 111122211100000001111112222       3468999


Q ss_pred             EEcCCCCCCC---CCch---hhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 022947          119 IIPAGVPRKP---GMTR---DDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       119 Iitag~~~~~---g~~r---~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      |.++|.....   ..+.   ...+..|+..    .+.+.+.+++. ..+.|+++|.
T Consensus        84 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~-~~g~iv~isS  138 (255)
T PRK06463         84 VNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLS-KNGAIVNIAS  138 (255)
T ss_pred             EECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcC
Confidence            9999874321   1121   2334556554    56666666543 3455666554

>PRK07904 short chain dehydrogenase; Provisional

Probab=96.88  E-value=0.016  Score=52.02  Aligned_cols=116  Identities=16%  Similarity=0.147  Sum_probs=65.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCC-CccEEEEEeCCCch---hHHhhhhcccCCceEEEE----ecCCCHHhhh----
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTP---GVTADISHMDTNAVVRGF----LGQQQLEDAL----  112 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g-~~~eI~LvD~~~~~---g~~~DL~~~~~~~~v~~~----~~t~d~~eal----  112 (289)
                      +.++|.|+||+|.+|..++..|+..| .  .|+++++++..   ....++.... ..++..+    ....+.++.+    
T Consensus         7 ~~~~vlItGas~giG~~la~~l~~~gg~--~V~~~~r~~~~~~~~~~~~l~~~~-~~~v~~~~~D~~~~~~~~~~~~~~~   83 (253)
T PRK07904          7 NPQTILLLGGTSEIGLAICERYLKNAPA--RVVLAALPDDPRRDAAVAQMKAAG-ASSVEVIDFDALDTDSHPKVIDAAF   83 (253)
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHHhcCCC--eEEEEeCCcchhHHHHHHHHHhcC-CCceEEEEecCCChHHHHHHHHHHH
Confidence            45689999999999999999988875 5  89999987621   1223333211 1122221    1111211112    


Q ss_pred             --CCCCEEEEcCCCCCCCCCch------hhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 022947          113 --TGMDIVIIPAGVPRKPGMTR------DDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       113 --~~aDiVIitag~~~~~g~~r------~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~tN  164 (289)
                        .+.|++|.++|.........      .+.+..|+..    .+.+.+.+.+... +.++++|.
T Consensus        84 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~-~~iv~isS  146 (253)
T PRK07904         84 AGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGF-GQIIAMSS  146 (253)
T ss_pred             hcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCC-ceEEEEec
Confidence              37999999988753221111      1235666543    3456666665543 45555543

>PRK09072 short chain dehydrogenase; Provisional

Probab=96.88  E-value=0.024  Score=50.72  Aligned_cols=115  Identities=22%  Similarity=0.256  Sum_probs=65.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCCHH---hh------hC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQLE---DA------LT  113 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~~---ea------l~  113 (289)
                      .++|.|+||+|.+|..++..|+.+|.  +|+++++++.  .....++..   ..++..+. +-.|.+   +.      +.
T Consensus         5 ~~~vlItG~s~~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~d~~~~~~~~~~~~~~~   79 (263)
T PRK09072          5 DKRVLLTGASGGIGQALAEALAAAGA--RLLLVGRNAEKLEALAARLPY---PGRHRWVVADLTSEAGREAVLARAREMG   79 (263)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHhc---CCceEEEEccCCCHHHHHHHHHHHHhcC
Confidence            45899999999999999999999997  8999998752  111122211   11222211 111221   11      35


Q ss_pred             CCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 022947          114 GMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNP  165 (289)
Q Consensus       114 ~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tNP  165 (289)
                      ..|++|.++|.....   ..+   -.+.+..|+.....+.+.+.++   .+.+.+++++..
T Consensus        80 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~  140 (263)
T PRK09072         80 GINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGST  140 (263)
T ss_pred             CCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecCh
Confidence            689999999864321   111   1234556766555555555432   233556665553

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=96.87  E-value=0.0028  Score=57.51  Aligned_cols=124  Identities=18%  Similarity=0.163  Sum_probs=79.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCc---------cEEEEEeCCCc--hhHHhhhhcc--c--CCceEEEEecCCCHHh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLV---------SVLHLYDVVNT--PGVTADISHM--D--TNAVVRGFLGQQQLED  110 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~---------~eI~LvD~~~~--~g~~~DL~~~--~--~~~~v~~~~~t~d~~e  110 (289)
                      ..||.|.|| |.-|..++..|...+.-         .+++++|..-.  .+. .|+...  .  .+.+-.  ....++.|
T Consensus        25 d~riv~~GA-GsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r-~~l~~~~~~~~~~~~~~--~~~~~L~e  100 (254)
T cd00762          25 EHKVLFNGA-GAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNR-KETCPNEYHLARFANPE--RESGDLED  100 (254)
T ss_pred             hcEEEEECc-CHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCC-CccCHHHHHHHHHcCcc--cccCCHHH
Confidence            359999999 99999999877654321         38999998651  111 111110  0  000101  11247899


Q ss_pred             hhC--CCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCc--ccHHHHHHHHHHhCCCCCC
Q 022947          111 ALT--GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN--STVPIAAEVFKKVGTYDPK  186 (289)
Q Consensus       111 al~--~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd--~~t~~~~~~~~~~~~~~~~  186 (289)
                      +++  ++|++|=+.+.+   |           -+.+++.+.|.+++++.+|+-.|||..  -+++   +..++.+  +-+
T Consensus       101 av~~~kptvlIG~S~~~---g-----------~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tp---e~a~~~t--~G~  161 (254)
T cd00762         101 AVEAAKPDFLIGVSRVG---G-----------AFTPEVIRAXAEINERPVIFALSNPTSKAECTA---EEAYTAT--EGR  161 (254)
T ss_pred             HHHhhCCCEEEEeCCCC---C-----------CCCHHHHHHHhhcCCCCEEEECCCcCCccccCH---HHHHhhc--CCC
Confidence            999  999988765544   2           235678889999999999999999987  5554   3344433  124


Q ss_pred             cEEEee
Q 022947          187 RLLGVT  192 (289)
Q Consensus       187 kviG~t  192 (289)
                      .+|++.
T Consensus       162 ai~AtG  167 (254)
T cd00762         162 AIFASG  167 (254)
T ss_pred             EEEEEC
Confidence            677774

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PRK07109 short chain dehydrogenase; Provisional

Probab=96.86  E-value=0.021  Score=53.60  Aligned_cols=114  Identities=13%  Similarity=0.095  Sum_probs=64.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhh-------h
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------L  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------l  112 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|+++++++.  .....++....  .++..+. +-+|   .+++       +
T Consensus         8 ~k~vlITGas~gIG~~la~~la~~G~--~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~~   83 (334)
T PRK07109          8 RQVVVITGASAGVGRATARAFARRGA--KVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEEL   83 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence            45899999999999999999999997  8999998752  22222332211  1221111 1112   2222       2


Q ss_pred             CCCCEEEEcCCCCCCC---CCch---hhHHHhh----HHHHHHHHHHHHHhCCCcEEEEecC
Q 022947          113 TGMDIVIIPAGVPRKP---GMTR---DDLFNIN----AGIVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       113 ~~aDiVIitag~~~~~---g~~r---~d~~~~N----~~i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      ...|++|.++|.....   ..+.   ...+..|    +...+.+.+.+.+.. .+.|++++.
T Consensus        84 g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~-~g~iV~isS  144 (334)
T PRK07109         84 GPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRD-RGAIIQVGS  144 (334)
T ss_pred             CCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEeCC
Confidence            4689999999864211   1111   1223344    344555666665542 355666554

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.86  E-value=0.0061  Score=55.12  Aligned_cols=68  Identities=18%  Similarity=0.250  Sum_probs=44.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCC-ccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~-~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      |||+|||+ |.+|+.++..|...++ ..++.++|++...  ..++....  ..+..   .++..+.++++|+||++.
T Consensus         1 m~IgiIG~-G~mG~aia~~L~~~g~~~~~i~v~~r~~~~--~~~l~~~~--~~~~~---~~~~~~~~~~aDvVilav   69 (258)
T PRK06476          1 MKIGFIGT-GAITEAMVTGLLTSPADVSEIIVSPRNAQI--AARLAERF--PKVRI---AKDNQAVVDRSDVVFLAV   69 (258)
T ss_pred             CeEEEECc-CHHHHHHHHHHHhCCCChheEEEECCCHHH--HHHHHHHc--CCceE---eCCHHHHHHhCCEEEEEe
Confidence            58999998 9999999999988774 3456777765422  22222211  11222   235567789999999985

>PLN02503 fatty acyl-CoA reductase 2

Probab=96.86  E-value=0.014  Score=59.46  Aligned_cols=112  Identities=15%  Similarity=0.078  Sum_probs=69.8

Q ss_pred             CCCCCCEEEEEcCCCccHHHHHHHHHhCC-CccEEEEEeCCCc----hhHH-hhhhccc----------------CCceE
Q 022947           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNT----PGVT-ADISHMD----------------TNAVV   99 (289)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~g-~~~eI~LvD~~~~----~g~~-~DL~~~~----------------~~~~v   99 (289)
                      +|-+.++|.|+||+||+|..++..|+..+ -..+|+++.+...    .... .++.+..                ...++
T Consensus       115 ~f~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki  194 (605)
T PLN02503        115 EFLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKL  194 (605)
T ss_pred             hhhcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccE
Confidence            34567899999999999999998888654 3568888877541    1111 1111100                01233


Q ss_pred             EEEecC----------CCHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC
Q 022947          100 RGFLGQ----------QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC  154 (289)
Q Consensus       100 ~~~~~t----------~d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~  154 (289)
                      ..+.+.          .+++...++.|+||++|+... ...+..+....|+...+++++.+++..
T Consensus       195 ~~v~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~-f~~~~~~a~~vNV~GT~nLLelA~~~~  258 (605)
T PLN02503        195 VPVVGNVCESNLGLEPDLADEIAKEVDVIINSAANTT-FDERYDVAIDINTRGPCHLMSFAKKCK  258 (605)
T ss_pred             EEEEeeCCCcccCCCHHHHHHHHhcCCEEEECccccc-cccCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            332211          123333467999999997643 233445567889999999999887653

>PRK07831 short chain dehydrogenase; Provisional

Probab=96.86  E-value=0.083  Score=47.17  Aligned_cols=35  Identities=31%  Similarity=0.294  Sum_probs=30.5

Q ss_pred             CCEEEEEcCCC-ccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAG-GIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG-~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .+++.|+|++| -+|..++..|+..|.  +|++.|++.
T Consensus        17 ~k~vlItG~sg~gIG~~ia~~l~~~G~--~V~~~~~~~   52 (262)
T PRK07831         17 GKVVLVTAAAGTGIGSATARRALEEGA--RVVISDIHE   52 (262)
T ss_pred             CCEEEEECCCcccHHHHHHHHHHHcCC--EEEEEeCCH
Confidence            45899999977 599999999999997  799999865

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=96.84  E-value=0.0059  Score=57.42  Aligned_cols=73  Identities=27%  Similarity=0.350  Sum_probs=48.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCC-CccEEEEEeCCCchhHH-hhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVT-ADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g-~~~eI~LvD~~~~~g~~-~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      ++||+|+||+|.||+.+...|..+. .+.++.++-..+..|+. .++.....  .+..  ...|. .+++++|+||+++|
T Consensus         1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~--~v~~--~~~~~-~~~~~~Divf~~ag   75 (334)
T COG0136           1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSI--GVPE--DAADE-FVFSDVDIVFFAAG   75 (334)
T ss_pred             CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccc--cCcc--ccccc-cccccCCEEEEeCc
Confidence            4699999999999999999998854 56677887665544443 43333211  1111  01132 45789999999986

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=96.82  E-value=0.014  Score=52.16  Aligned_cols=36  Identities=17%  Similarity=0.241  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|+++
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~   40 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLAEGA--RVAVLERSA   40 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            346899999999999999999999997  899999875

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.82  E-value=0.0065  Score=58.18  Aligned_cols=72  Identities=22%  Similarity=0.204  Sum_probs=44.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHh-CCC-ccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKI-NPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~-~g~-~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      |+||+|+||+|+||..+...++. ..+ ..+++++......+....+...    ...... ..+. +.++++|+||+++|
T Consensus         1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~----~~~v~~-~~~~-~~~~~~Divf~a~~   74 (369)
T PRK06598          1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGK----EGTLQD-AFDI-DALKKLDIIITCQG   74 (369)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCC----cceEEe-cCCh-hHhcCCCEEEECCC
Confidence            36999999999999999974554 444 4568887654322232222221    112121 1222 56899999999875

>PRK06953 short chain dehydrogenase; Provisional

Probab=96.81  E-value=0.018  Score=50.18  Aligned_cols=113  Identities=16%  Similarity=0.187  Sum_probs=63.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEE-EEecCCCHHh---hhC--CCCEEEE
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLED---ALT--GMDIVII  120 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~-~~~~t~d~~e---al~--~aDiVIi  120 (289)
                      +++.|+|++|.+|+.++..|+..|.  +|+++|++....  .++...... .+. ..+...++++   .+.  ..|+||+
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~--~v~~~~r~~~~~--~~~~~~~~~-~~~~D~~~~~~v~~~~~~~~~~~~d~vi~   76 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGW--RVIATARDAAAL--AALQALGAE-ALALDVADPASVAGLAWKLDGEALDAAVY   76 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCC--EEEEEECCHHHH--HHHHhccce-EEEecCCCHHHHHHHHHHhcCCCCCEEEE
Confidence            4799999999999999999998887  899999875211  112211100 011 0111112222   133  4799999


Q ss_pred             cCCCCCC---C--CCch---hhHHHhhHHHHHHHHHHHHHhC--CCcEEEEecC
Q 022947          121 PAGVPRK---P--GMTR---DDLFNINAGIVKTLCEGIAKCC--PKAIVNLISN  164 (289)
Q Consensus       121 tag~~~~---~--g~~r---~d~~~~N~~i~~~i~~~i~~~~--p~aiviv~tN  164 (289)
                      ++|....   +  ..+.   ...+..|+.....+.+.+.++-  ..+.+++++.
T Consensus        77 ~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS  130 (222)
T PRK06953         77 VAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSS  130 (222)
T ss_pred             CCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcC
Confidence            9987521   1  1122   3356677766666665555432  2345555544

>PRK08605 D-lactate dehydrogenase; Validated

Probab=96.81  E-value=0.0055  Score=57.86  Aligned_cols=62  Identities=29%  Similarity=0.416  Sum_probs=44.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHh-CCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~-~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      .+||+|||. |.+|+.+|..|+. .|.  +|+.+|.......    ..     .+.   ...++++.+++||+|+++.
T Consensus       146 g~~VgIIG~-G~IG~~vA~~L~~~~g~--~V~~~d~~~~~~~----~~-----~~~---~~~~l~ell~~aDvIvl~l  208 (332)
T PRK08605        146 DLKVAVIGT-GRIGLAVAKIFAKGYGS--DVVAYDPFPNAKA----AT-----YVD---YKDTIEEAVEGADIVTLHM  208 (332)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCC--EEEEECCCccHhH----Hh-----hcc---ccCCHHHHHHhCCEEEEeC
Confidence            568999998 9999999998843 355  8999987642111    10     011   1236788999999999986

>PLN02712 arogenate dehydrogenase

Probab=96.79  E-value=0.01  Score=61.09  Aligned_cols=66  Identities=18%  Similarity=0.257  Sum_probs=46.2

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhC-CCCEEEEcC
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT-GMDIVIIPA  122 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~-~aDiVIita  122 (289)
                      .+++||+|||. |.+|.+++..|...|.  +|+.+|.+.....+.++   .    +..   ..++++.+. ++|+||++.
T Consensus       367 ~~~~kIgIIGl-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~a~~~---G----v~~---~~~~~el~~~~aDvVILav  433 (667)
T PLN02712        367 GSKLKIAIVGF-GNFGQFLAKTMVKQGH--TVLAYSRSDYSDEAQKL---G----VSY---FSDADDLCEEHPEVILLCT  433 (667)
T ss_pred             CCCCEEEEEec-CHHHHHHHHHHHHCcC--EEEEEECChHHHHHHHc---C----CeE---eCCHHHHHhcCCCEEEECC
Confidence            35679999998 9999999999988886  89999987521111211   1    111   235556565 599999985

>PRK07574 formate dehydrogenase; Provisional

Probab=96.79  E-value=0.01  Score=57.15  Aligned_cols=94  Identities=17%  Similarity=0.229  Sum_probs=60.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      ..++|+|||. |.||+.+|..|...|.  +|..+|+......   .....   .+..   ..++++.++.||+|+++...
T Consensus       191 ~gktVGIvG~-G~IG~~vA~~l~~fG~--~V~~~dr~~~~~~---~~~~~---g~~~---~~~l~ell~~aDvV~l~lPl  258 (385)
T PRK07574        191 EGMTVGIVGA-GRIGLAVLRRLKPFDV--KLHYTDRHRLPEE---VEQEL---GLTY---HVSFDSLVSVCDVVTIHCPL  258 (385)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCCchh---hHhhc---Ccee---cCCHHHHhhcCCEEEEcCCC
Confidence            4568999998 9999999999988887  9999998652111   11100   1111   13578889999999998532


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      .  +         .+-.++.  .+.+....|.+++|+++
T Consensus       259 t--~---------~T~~li~--~~~l~~mk~ga~lIN~a  284 (385)
T PRK07574        259 H--P---------ETEHLFD--ADVLSRMKRGSYLVNTA  284 (385)
T ss_pred             C--H---------HHHHHhC--HHHHhcCCCCcEEEECC
Confidence            1  1         1111221  23344456789999875

>PRK08703 short chain dehydrogenase; Provisional

Probab=96.77  E-value=0.089  Score=46.21  Aligned_cols=35  Identities=20%  Similarity=0.226  Sum_probs=31.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .++|.|+|++|.+|.+++..|+..|.  +|+++++++
T Consensus         6 ~k~vlItG~sggiG~~la~~l~~~g~--~V~~~~r~~   40 (239)
T PRK08703          6 DKTILVTGASQGLGEQVAKAYAAAGA--TVILVARHQ   40 (239)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCh
Confidence            45899999999999999999999997  899999876

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=96.77  E-value=0.0087  Score=54.65  Aligned_cols=69  Identities=13%  Similarity=0.285  Sum_probs=44.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCC-CccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g-~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      +|||+|||+ |.+|..++..+...+ -..-+.++|.+...  +.++.... .  ...+   +++++.+.++|+|++++.
T Consensus         1 mmrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~~~~--a~~~a~~~-~--~~~~---~~~~ell~~~DvVvi~a~   70 (265)
T PRK13304          1 MLKIGIVGC-GAIASLITKAILSGRINAELYAFYDRNLEK--AENLASKT-G--AKAC---LSIDELVEDVDLVVECAS   70 (265)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCCHHH--HHHHHHhc-C--CeeE---CCHHHHhcCCCEEEEcCC
Confidence            479999998 999999998887654 22235678876521  12222211 1  1222   356676799999999964

>PRK07578 short chain dehydrogenase; Provisional

Probab=96.77  E-value=0.017  Score=49.56  Aligned_cols=104  Identities=21%  Similarity=0.186  Sum_probs=59.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~~  126 (289)
                      |++.|+|++|.+|..++..|++. .  +|++++++.. ....|+.+...   +.      ...+.+...|++|.++|...
T Consensus         1 ~~vlItGas~giG~~la~~l~~~-~--~vi~~~r~~~-~~~~D~~~~~~---~~------~~~~~~~~id~lv~~ag~~~   67 (199)
T PRK07578          1 MKILVIGASGTIGRAVVAELSKR-H--EVITAGRSSG-DVQVDITDPAS---IR------ALFEKVGKVDAVVSAAGKVH   67 (199)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhc-C--cEEEEecCCC-ceEecCCChHH---HH------HHHHhcCCCCEEEECCCCCC
Confidence            48999999999999999998877 4  8999987642 11123332210   00      01122347899999998642


Q ss_pred             C-C--CCchh---hHHHhhHHHHHHHHHHHHHh-CCCcEEEEec
Q 022947          127 K-P--GMTRD---DLFNINAGIVKTLCEGIAKC-CPKAIVNLIS  163 (289)
Q Consensus       127 ~-~--g~~r~---d~~~~N~~i~~~i~~~i~~~-~p~aiviv~t  163 (289)
                      . +  ..+..   +.+..|+.....+.+...++ .+.+.++++|
T Consensus        68 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is  111 (199)
T PRK07578         68 FAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTS  111 (199)
T ss_pred             CCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEc
Confidence            1 1  12222   23445555444444444332 1345555555

>PRK07775 short chain dehydrogenase; Provisional

Probab=96.76  E-value=0.046  Score=49.39  Aligned_cols=35  Identities=23%  Similarity=0.186  Sum_probs=30.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      ++.+.|+||+|.+|.+++..|+.+|.  +|++++++.
T Consensus        10 ~~~vlVtGa~g~iG~~la~~L~~~G~--~V~~~~r~~   44 (274)
T PRK07775         10 RRPALVAGASSGIGAATAIELAAAGF--PVALGARRV   44 (274)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            35799999999999999999999997  888888765

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=96.76  E-value=0.0074  Score=57.66  Aligned_cols=71  Identities=18%  Similarity=0.274  Sum_probs=47.1

Q ss_pred             CEEEEEcCCCccHHHHHHHHH-hCCC-ccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMK-INPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~-~~g~-~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      +||+|+||+|.||+.+...|. ++.+ ..+++++...+..|........  ...+..   .++. +++++.|+||+++|
T Consensus         1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~--~~~v~~---~~~~-~~~~~vDivffa~g   73 (366)
T TIGR01745         1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGT--TGTLQD---AFDI-DALKALDIIITCQG   73 (366)
T ss_pred             CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCC--cceEEc---Cccc-ccccCCCEEEEcCC
Confidence            489999999999999998888 5554 3688888765533333322221  112222   1221 47899999999986

>PRK06123 short chain dehydrogenase; Provisional

Probab=96.76  E-value=0.056  Score=47.56  Aligned_cols=34  Identities=26%  Similarity=0.303  Sum_probs=28.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      +.+.|+|++|.+|+.++..|+..|.  .+++.+.+.
T Consensus         3 ~~~lVtG~~~~iG~~~a~~l~~~G~--~vv~~~~~~   36 (248)
T PRK06123          3 KVMIITGASRGIGAATALLAAERGY--AVCLNYLRN   36 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--eEEEecCCC
Confidence            3689999999999999999999886  777777543

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.76  E-value=0.012  Score=55.04  Aligned_cols=100  Identities=21%  Similarity=0.298  Sum_probs=63.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--hHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      ..+||+|+|+ |.+|..++..|...+. .+|.++|++..+  ..+.++.     ..+..   .+++.+.+.++|+||.+.
T Consensus       177 ~~~~V~ViGa-G~iG~~~a~~L~~~g~-~~V~v~~r~~~ra~~la~~~g-----~~~~~---~~~~~~~l~~aDvVi~at  246 (311)
T cd05213         177 KGKKVLVIGA-GEMGELAAKHLAAKGV-AEITIANRTYERAEELAKELG-----GNAVP---LDELLELLNEADVVISAT  246 (311)
T ss_pred             cCCEEEEECc-HHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHcC-----CeEEe---HHHHHHHHhcCCEEEECC
Confidence            4679999998 9999999988877553 489999987522  2222221     11111   135667889999999997


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCCCccc
Q 022947          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNST  169 (289)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~-~p~aiviv~tNPvd~~  169 (289)
                      +.+..            ...+.+.   ++.. ....+++=+++|-|+=
T Consensus       247 ~~~~~------------~~~~~~~---~~~~~~~~~~viDlavPrdi~  279 (311)
T cd05213         247 GAPHY------------AKIVERA---MKKRSGKPRLIVDLAVPRDIE  279 (311)
T ss_pred             CCCch------------HHHHHHH---HhhCCCCCeEEEEeCCCCCCc
Confidence            65521            1111222   1112 2456888889998864

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=96.75  E-value=0.026  Score=49.51  Aligned_cols=115  Identities=21%  Similarity=0.148  Sum_probs=63.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcc--cCCceEEEEe-cCCC---HHhh-------hC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--DTNAVVRGFL-GQQQ---LEDA-------LT  113 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~--~~~~~v~~~~-~t~d---~~ea-------l~  113 (289)
                      +++.|+|++|.+|+.++..|+..|.  .|++.|++.. ....++...  ....++..+. +-.+   ..++       +.
T Consensus         3 k~vlItG~s~~iG~~la~~l~~~g~--~vi~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~   79 (245)
T PRK12824          3 KIALVTGAKRGIGSAIARELLNDGY--RVIATYFSGN-DCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEG   79 (245)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCcH-HHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4889999999999999999999886  8999998742 111111111  0011222211 1111   2222       23


Q ss_pred             CCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHH----HHHHHHhCCCcEEEEecCC
Q 022947          114 GMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTL----CEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       114 ~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~~~i----~~~i~~~~p~aiviv~tNP  165 (289)
                      ..|++|+++|.....   ..+   -...+..|+.....+    .+.+++. +.+.++++|..
T Consensus        80 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~iss~  140 (245)
T PRK12824         80 PVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQ-GYGRIINISSV  140 (245)
T ss_pred             CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-CCeEEEEECCh
Confidence            589999999864211   111   123445666554444    4444443 34566666643

>PRK06139 short chain dehydrogenase; Provisional

Probab=96.75  E-value=0.026  Score=53.12  Aligned_cols=114  Identities=18%  Similarity=0.112  Sum_probs=64.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEE----EecCCCHHhh-------h
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRG----FLGQQQLEDA-------L  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~----~~~t~d~~ea-------l  112 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|+++++++.  +....++....  ..+..    .+..++.++.       +
T Consensus         7 ~k~vlITGAs~GIG~aia~~la~~G~--~Vvl~~R~~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~~~~~~   82 (330)
T PRK06139          7 GAVVVITGASSGIGQATAEAFARRGA--RLVLAARDEEALQAVAEECRALG--AEVLVVPTDVTDADQVKALATQAASFG   82 (330)
T ss_pred             CCEEEEcCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHhc
Confidence            45899999999999999999999997  8999998762  22222332211  11111    1111122222       2


Q ss_pred             CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecC
Q 022947          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       113 ~~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~----~~i~~~i~~~~p~aiviv~tN  164 (289)
                      ...|++|.++|.....   ..+   -.+.+..|+...    +...+.+.+.. .+.+++++.
T Consensus        83 g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~-~g~iV~isS  143 (330)
T PRK06139         83 GRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQG-HGIFINMIS  143 (330)
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcC-CCEEEEEcC
Confidence            4689999999864321   111   123455555433    33444444432 456666553

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=96.74  E-value=0.0057  Score=50.43  Aligned_cols=73  Identities=21%  Similarity=0.308  Sum_probs=48.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--hHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      +.++|+|+|+ |.+|..++..|...+ ..+|.++|++...  ..+.++...  .....    ..+.++.++++|+||.+.
T Consensus        18 ~~~~i~iiG~-G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~Dvvi~~~   89 (155)
T cd01065          18 KGKKVLILGA-GGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGEL--GIAIA----YLDLEELLAEADLIINTT   89 (155)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhhc--cccee----ecchhhccccCCEEEeCc
Confidence            3569999998 999999999998876 3489999987622  222222211  00111    124556689999999997


Q ss_pred             CCC
Q 022947          123 GVP  125 (289)
Q Consensus       123 g~~  125 (289)
                      ...
T Consensus        90 ~~~   92 (155)
T cd01065          90 PVG   92 (155)
T ss_pred             CCC
Confidence            544

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK09134 short chain dehydrogenase; Provisional

Probab=96.73  E-value=0.011  Score=52.64  Aligned_cols=113  Identities=14%  Similarity=0.152  Sum_probs=62.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-c--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal------  112 (289)
                      .+++.|+||+|.+|.+++..|+..|.  .+++.+... .  .....++...  ...+..+. +-+|   +.+++      
T Consensus         9 ~k~vlItGas~giG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~~~~   84 (258)
T PRK09134          9 PRAALVTGAARRIGRAIALDLAAHGF--DVAVHYNRSRDEAEALAAEIRAL--GRRAVALQADLADEAEVRALVARASAA   84 (258)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999999887  787776543 1  1111122211  11222211 1112   22222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHhC---CCcEEEEe
Q 022947          113 -TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCC---PKAIVNLI  162 (289)
Q Consensus       113 -~~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~~---p~aiviv~  162 (289)
                       ...|+||+++|.....   ..+   -...+..|+.....+.+.+.++.   ..+.++++
T Consensus        85 ~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~  144 (258)
T PRK09134         85 LGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNM  144 (258)
T ss_pred             cCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEE
Confidence             3479999999864321   112   13356677765555555555432   23455544

>PRK07023 short chain dehydrogenase; Provisional

Probab=96.73  E-value=0.0058  Score=53.97  Aligned_cols=35  Identities=17%  Similarity=0.193  Sum_probs=31.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      +|+|.|+||+|.+|..++..|+..|.  +|++++++.
T Consensus         1 ~~~vlItGasggiG~~ia~~l~~~G~--~v~~~~r~~   35 (243)
T PRK07023          1 AVRAIVTGHSRGLGAALAEQLLQPGI--AVLGVARSR   35 (243)
T ss_pred             CceEEEecCCcchHHHHHHHHHhCCC--EEEEEecCc
Confidence            46899999999999999999999997  899998865

>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]

Probab=96.72  E-value=0.016  Score=54.26  Aligned_cols=105  Identities=19%  Similarity=0.109  Sum_probs=67.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC---c--hhHHhhhhcccCCceEEEEecC-CC---HHhhh--CC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---T--PGVTADISHMDTNAVVRGFLGQ-QQ---LEDAL--TG  114 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~---~--~g~~~DL~~~~~~~~v~~~~~t-~d---~~eal--~~  114 (289)
                      .++|.|+||+|++|++.+..|+.+|+  +|+++|.-.   .  -..+..+.+.  ...+....+. .|   +++.+  ..
T Consensus         2 ~~~VLVtGgaGyiGsht~l~L~~~gy--~v~~vDNl~n~~~~sl~r~~~l~~~--~~~v~f~~~Dl~D~~~L~kvF~~~~   77 (343)
T KOG1371|consen    2 GKHVLVTGGAGYIGSHTVLALLKRGY--GVVIVDNLNNSYLESLKRVRQLLGE--GKSVFFVEGDLNDAEALEKLFSEVK   77 (343)
T ss_pred             CcEEEEecCCcceehHHHHHHHhCCC--cEEEEecccccchhHHHHHHHhcCC--CCceEEEEeccCCHHHHHHHHhhcC
Confidence            45899999999999999999999998  999999754   1  1122222221  1223322111 12   22222  34


Q ss_pred             CCEEEEcCCCCCC-C-CCchhhHHHhhHHHHHHHHHHHHHhC
Q 022947          115 MDIVIIPAGVPRK-P-GMTRDDLFNINAGIVKTLCEGIAKCC  154 (289)
Q Consensus       115 aDiVIitag~~~~-~-g~~r~d~~~~N~~i~~~i~~~i~~~~  154 (289)
                      -|-|++.|+...- + =+.+..+...|+-....+.+.+++++
T Consensus        78 fd~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~  119 (343)
T KOG1371|consen   78 FDAVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHN  119 (343)
T ss_pred             CceEEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcC
Confidence            6778887764321 1 12345667788999999999999987

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=96.71  E-value=0.0093  Score=58.93  Aligned_cols=97  Identities=14%  Similarity=0.195  Sum_probs=59.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcc-cCCceEEEEecCCCHHhhhCCCCEEEEcCCCCC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-DTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~-~~~~~v~~~~~t~d~~eal~~aDiVIitag~~~  126 (289)
                      +|+|||. |.+|.++|..|+..|+  +|.++|+++..  ..++... .....+.......++.+.++++|+||++.-.  
T Consensus         1 ~IG~IGL-G~MG~~mA~nL~~~G~--~V~v~drt~~~--~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~--   73 (467)
T TIGR00873         1 DIGVIGL-AVMGSNLALNMADHGF--TVSVYNRTPEK--TDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKA--   73 (467)
T ss_pred             CEEEEee-HHHHHHHHHHHHhcCC--eEEEEeCCHHH--HHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCC--
Confidence            4899998 9999999999999998  99999987622  2222221 0000122211111233345689999998521  


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 022947          127 KPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (289)
Q Consensus       127 ~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tN  164 (289)
                        +           +.+.++++.+..+- ++.+||-.||
T Consensus        74 --~-----------~~v~~Vi~~l~~~L~~g~iIID~gn   99 (467)
T TIGR00873        74 --G-----------APVDAVINQLLPLLEKGDIIIDGGN   99 (467)
T ss_pred             --c-----------HHHHHHHHHHHhhCCCCCEEEECCC
Confidence              1           23444555665553 6778887776

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.71  E-value=0.046  Score=48.18  Aligned_cols=114  Identities=15%  Similarity=0.175  Sum_probs=60.8

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEE-eCCCc--hhHHhhhhcccCCceEEEEe-c---CCCHHhhh-------
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNT--PGVTADISHMDTNAVVRGFL-G---QQQLEDAL-------  112 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~Lv-D~~~~--~g~~~DL~~~~~~~~v~~~~-~---t~d~~eal-------  112 (289)
                      +++.|+||+|.+|..++..|+..|.  +|++. +++..  .....++....  ..+..+. +   ..++.+++       
T Consensus         5 ~~vlItGa~g~iG~~~a~~l~~~g~--~v~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (250)
T PRK08063          5 KVALVTGSSRGIGKAIALRLAEEGY--DIAVNYARSRKAAEETAEEIEALG--RKALAVKANVGDVEKIKEMFAQIDEEF   80 (250)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            5899999999999999999999987  76654 44432  11112222211  1222111 1   11222222       


Q ss_pred             CCCCEEEEcCCCCCC-C--CCchh---hHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 022947          113 TGMDIVIIPAGVPRK-P--GMTRD---DLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (289)
Q Consensus       113 ~~aDiVIitag~~~~-~--g~~r~---d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tN  164 (289)
                      ...|+||..+|.... +  ..+..   ..+..|......+++.+.++   .+.+.|+++|.
T Consensus        81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS  141 (250)
T PRK08063         81 GRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSS  141 (250)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence            368999999885321 1  11111   13445655555555554443   23456666654

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=96.70  E-value=0.11  Score=46.51  Aligned_cols=33  Identities=15%  Similarity=0.276  Sum_probs=29.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV   80 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~   80 (289)
                      .+++.|+||++.+|..++..|+..|.  .|++.+.
T Consensus         8 ~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~   40 (260)
T PRK08416          8 GKTLVISGGTRGIGKAIVYEFAQSGV--NIAFTYN   40 (260)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcC
Confidence            45899999999999999999999997  7888754

>PRK07062 short chain dehydrogenase; Provisional

Probab=96.70  E-value=0.046  Score=48.86  Aligned_cols=116  Identities=15%  Similarity=0.152  Sum_probs=64.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCCH---H-------hhh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL---E-------DAL  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~---~-------eal  112 (289)
                      .+.+.|+||+|.+|..++..|+..|.  +|+++++++.  .....++.......++..+. +-.|.   .       +.+
T Consensus         8 ~k~~lItGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   85 (265)
T PRK07062          8 GRVAVVTGGSSGIGLATVELLLEAGA--SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF   85 (265)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence            35799999999999999999999997  8999998762  22222232211111222111 11222   1       123


Q ss_pred             CCCCEEEEcCCCCCCC---CCch---hhHHHhh----HHHHHHHHHHHHHhCCCcEEEEecC
Q 022947          113 TGMDIVIIPAGVPRKP---GMTR---DDLFNIN----AGIVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       113 ~~aDiVIitag~~~~~---g~~r---~d~~~~N----~~i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      ...|++|.+||.....   ..+.   ...+..|    +...+.+.+.+++. ..+.|+++|.
T Consensus        86 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~isS  146 (265)
T PRK07062         86 GGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRAS-AAASIVCVNS  146 (265)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-CCcEEEEecc
Confidence            4679999999864321   1111   1223334    33455555656543 3456666554

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=96.69  E-value=0.0058  Score=52.82  Aligned_cols=75  Identities=20%  Similarity=0.213  Sum_probs=47.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--hHHhhhhcccCCceEEEE--ecCCCHHhhhCCCCEEEEc
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGF--LGQQQLEDALTGMDIVIIP  121 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g~~~DL~~~~~~~~v~~~--~~t~d~~eal~~aDiVIit  121 (289)
                      .+++.|+|++|.+|..++..|+..+.  +|.+++++..+  ....++.+.. ...+...  ....++.++++++|+||.+
T Consensus        28 ~~~vlVlGgtG~iG~~~a~~l~~~g~--~V~l~~R~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~diVi~a  104 (194)
T cd01078          28 GKTAVVLGGTGPVGQRAAVLLAREGA--RVVLVGRDLERAQKAADSLRARF-GEGVGAVETSDDAARAAAIKGADVVFAA  104 (194)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhhc-CCcEEEeeCCCHHHHHHHHhcCCEEEEC
Confidence            35899999889999999999988875  89999876521  1222222111 1122211  1112345788999998887


Q ss_pred             CC
Q 022947          122 AG  123 (289)
Q Consensus       122 ag  123 (289)
                      ..
T Consensus       105 t~  106 (194)
T cd01078         105 GA  106 (194)
T ss_pred             CC
Confidence            43

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=96.69  E-value=0.0074  Score=54.89  Aligned_cols=121  Identities=21%  Similarity=0.307  Sum_probs=77.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhC----CCc-----cEEEEEeCCC--chhHHhhhhccc-----CCceEEEEecCCCHH
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKIN----PLV-----SVLHLYDVVN--TPGVTADISHMD-----TNAVVRGFLGQQQLE  109 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~----g~~-----~eI~LvD~~~--~~g~~~DL~~~~-----~~~~v~~~~~t~d~~  109 (289)
                      ..||.+.|| |.-|..++..|...    |+-     ++++++|.+-  ..+. .||.+..     .......   ..++.
T Consensus        25 d~riv~~GA-GsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r-~~l~~~~~~~a~~~~~~~~---~~~L~   99 (255)
T PF03949_consen   25 DQRIVFFGA-GSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDR-EDLNPHKKPFARKTNPEKD---WGSLL   99 (255)
T ss_dssp             G-EEEEEB--SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTT-SSHSHHHHHHHBSSSTTT-----SSHH
T ss_pred             HcEEEEeCC-ChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccC-ccCChhhhhhhccCccccc---ccCHH
Confidence            358999999 99999999877654    763     7899999875  1111 2222110     0011110   13788


Q ss_pred             hhhCCC--CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCc--ccHHHHHHHHHHhCCCCC
Q 022947          110 DALTGM--DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN--STVPIAAEVFKKVGTYDP  185 (289)
Q Consensus       110 eal~~a--DiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd--~~t~~~~~~~~~~~~~~~  185 (289)
                      |+++++  |++|=+.|.+   |           -+.+++.+.|.+++++.+|+-.|||..  -+++   +-.++   |..
T Consensus       100 eav~~~kPtvLIG~S~~~---g-----------~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~p---eda~~---~t~  159 (255)
T PF03949_consen  100 EAVKGAKPTVLIGLSGQG---G-----------AFTEEVVRAMAKHNERPIIFPLSNPTPKAECTP---EDAYE---WTD  159 (255)
T ss_dssp             HHHHCH--SEEEECSSST---T-----------SS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-H---HHHHH---TTT
T ss_pred             HHHHhcCCCEEEEecCCC---C-----------cCCHHHHHHHhccCCCCEEEECCCCCCcccCCH---HHHHh---hCC
Confidence            999999  9998776643   2           135778899999999999999999987  6664   33443   444


Q ss_pred             CcE-EEe
Q 022947          186 KRL-LGV  191 (289)
Q Consensus       186 ~kv-iG~  191 (289)
                      .|+ |++
T Consensus       160 g~ai~At  166 (255)
T PF03949_consen  160 GRAIFAT  166 (255)
T ss_dssp             SEEEEEE
T ss_pred             ceEEEec
Confidence            554 465

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>PLN03139 formate dehydrogenase; Provisional

Probab=96.68  E-value=0.013  Score=56.54  Aligned_cols=94  Identities=22%  Similarity=0.223  Sum_probs=60.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      ..++|+|||. |.||..++..|..-|.  +|..+|.........  ...    .+..   ..++++.+++||+|+++...
T Consensus       198 ~gktVGIVG~-G~IG~~vA~~L~afG~--~V~~~d~~~~~~~~~--~~~----g~~~---~~~l~ell~~sDvV~l~lPl  265 (386)
T PLN03139        198 EGKTVGTVGA-GRIGRLLLQRLKPFNC--NLLYHDRLKMDPELE--KET----GAKF---EEDLDAMLPKCDVVVINTPL  265 (386)
T ss_pred             CCCEEEEEee-cHHHHHHHHHHHHCCC--EEEEECCCCcchhhH--hhc----Ccee---cCCHHHHHhhCCEEEEeCCC
Confidence            4569999998 9999999999988787  899999764211111  011    1111   13678889999999998521


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      .  +         .+-.++.  .+.+....|.+++|+++
T Consensus       266 t--~---------~T~~li~--~~~l~~mk~ga~lIN~a  291 (386)
T PLN03139        266 T--E---------KTRGMFN--KERIAKMKKGVLIVNNA  291 (386)
T ss_pred             C--H---------HHHHHhC--HHHHhhCCCCeEEEECC
Confidence            1  1         1122221  23455556889999875

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.66  E-value=0.04  Score=48.57  Aligned_cols=33  Identities=21%  Similarity=0.294  Sum_probs=28.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV   80 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~   80 (289)
                      .++|.|+||+|++|++++..|+..|.  ++++...
T Consensus         6 ~~~vlitGasg~iG~~l~~~l~~~g~--~v~~~~~   38 (252)
T PRK06077          6 DKVVVVTGSGRGIGRAIAVRLAKEGS--LVVVNAK   38 (252)
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeC
Confidence            35899999999999999999999997  7766543

>PLN02928 oxidoreductase family protein

Probab=96.65  E-value=0.0089  Score=56.84  Aligned_cols=104  Identities=23%  Similarity=0.207  Sum_probs=61.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhh--hcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADI--SHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL--~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      ..++|+|+|. |.+|+.+|..|...|.  +|+.+|+.........+  ................++++.++.||+|+++.
T Consensus       158 ~gktvGIiG~-G~IG~~vA~~l~afG~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~l  234 (347)
T PLN02928        158 FGKTVFILGY-GAIGIELAKRLRPFGV--KLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCC  234 (347)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHhhCCC--EEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECC
Confidence            3569999998 9999999999988887  99999975311111110  00000000000001236889999999999985


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 022947          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      ...  + +        +-.++.  .+.+.+..|.+++|+++=
T Consensus       235 Plt--~-~--------T~~li~--~~~l~~Mk~ga~lINvaR  263 (347)
T PLN02928        235 TLT--K-E--------TAGIVN--DEFLSSMKKGALLVNIAR  263 (347)
T ss_pred             CCC--h-H--------hhcccC--HHHHhcCCCCeEEEECCC
Confidence            321  1 1        111121  244555568999999863

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.65  E-value=0.022  Score=52.60  Aligned_cols=121  Identities=18%  Similarity=0.240  Sum_probs=79.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCceEEEE----ecCCCHH-------hhh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGF----LGQQQLE-------DAL  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~----~~t~d~~-------eal  112 (289)
                      .+.|.|+|||.-+|.++|+.++..|.  .++++....  .+-...++.......++...    +..++.+       .-+
T Consensus        12 ~kvVvITGASsGIG~~lA~~la~~G~--~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~f   89 (282)
T KOG1205|consen   12 GKVVLITGASSGIGEALAYELAKRGA--KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHF   89 (282)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHhCCC--ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhc
Confidence            34789999999999999999999997  778887655  22222444443211112211    1112222       346


Q ss_pred             CCCCEEEEcCCCCCCCCC-c------hhhHHHhh----HHHHHHHHHHHHHhCCCcEEEEecCCCcccH
Q 022947          113 TGMDIVIIPAGVPRKPGM-T------RDDLFNIN----AGIVKTLCEGIAKCCPKAIVNLISNPVNSTV  170 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g~-~------r~d~~~~N----~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t  170 (289)
                      .+.|+.|.-||+.+ .+. +      ..+.+..|    +-..+...+.|++.+ ++.|+++++....++
T Consensus        90 g~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~-~GhIVvisSiaG~~~  156 (282)
T KOG1205|consen   90 GRVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN-DGHIVVISSIAGKMP  156 (282)
T ss_pred             CCCCEEEecCcccc-ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC-CCeEEEEeccccccC
Confidence            79999999999877 321 1      12234444    678899999999887 899998887776543

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=96.64  E-value=0.024  Score=48.49  Aligned_cols=33  Identities=36%  Similarity=0.578  Sum_probs=29.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      ||+|+|+ |.+|+.++..|+..|. .++.|+|.+.
T Consensus         1 ~VlViG~-GglGs~ia~~La~~Gv-g~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGA-GGLGSNIAVLLARSGV-GNLKLVDFDV   33 (174)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence            6899998 9999999999999986 5899999875

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.64  E-value=0.015  Score=50.97  Aligned_cols=35  Identities=26%  Similarity=0.482  Sum_probs=31.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      ..||.|+|+ |.+|+.++..|+..|. .+|.++|.+.
T Consensus        21 ~~~VlviG~-GglGs~ia~~La~~Gv-~~i~lvD~d~   55 (202)
T TIGR02356        21 NSHVLIIGA-GGLGSPAALYLAGAGV-GTIVIVDDDH   55 (202)
T ss_pred             CCCEEEECC-CHHHHHHHHHHHHcCC-CeEEEecCCE
Confidence            458999998 9999999999999995 6999999874

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.64  E-value=0.0054  Score=57.92  Aligned_cols=71  Identities=24%  Similarity=0.441  Sum_probs=46.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCC-ccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~-~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      ++||+|+||+|++|..+...|..+++ ..||..+-.++..++..++..    ..+... .. + ..+++++|+||++.|
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g----~~i~v~-d~-~-~~~~~~vDvVf~A~g   72 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKG----KELKVE-DL-T-TFDFSGVDIALFSAG   72 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCC----ceeEEe-eC-C-HHHHcCCCEEEECCC
Confidence            46999999999999999999988653 247777755443344333321    122221 11 2 245789999999875

>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila

Probab=96.63  E-value=0.0084  Score=53.79  Aligned_cols=112  Identities=15%  Similarity=0.118  Sum_probs=59.1

Q ss_pred             EEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--h--HH-hhhhccc--------CCceEEEEecC----------CC
Q 022947           51 VLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--G--VT-ADISHMD--------TNAVVRGFLGQ----------QQ  107 (289)
Q Consensus        51 IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g--~~-~DL~~~~--------~~~~v~~~~~t----------~d  107 (289)
                      |+||+||+|+++...|+..+...+|+++-+....  +  .. ..+.+..        ...+++.+.+.          .+
T Consensus         1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~   80 (249)
T PF07993_consen    1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED   80 (249)
T ss_dssp             EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred             CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence            6899999999999888877642288888776511  1  11 1111110        02345544321          13


Q ss_pred             HHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 022947          108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       108 ~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      +.+-.+.+|+||++|+.-. ...+..++...|+...+++++-..+.... .++.+|.
T Consensus        81 ~~~L~~~v~~IiH~Aa~v~-~~~~~~~~~~~NV~gt~~ll~la~~~~~~-~~~~iST  135 (249)
T PF07993_consen   81 YQELAEEVDVIIHCAASVN-FNAPYSELRAVNVDGTRNLLRLAAQGKRK-RFHYIST  135 (249)
T ss_dssp             HHHHHHH--EEEE--SS-S-BS-S--EEHHHHHHHHHHHHHHHTSSS----EEEEEE
T ss_pred             hhccccccceeeecchhhh-hcccchhhhhhHHHHHHHHHHHHHhccCc-ceEEecc
Confidence            4344489999999987532 12234456788999999999988854434 4444443

A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.

>PRK07677 short chain dehydrogenase; Provisional

Probab=96.62  E-value=0.053  Score=48.12  Aligned_cols=114  Identities=11%  Similarity=0.081  Sum_probs=64.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHh-------hhC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LED-------ALT  113 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~e-------al~  113 (289)
                      +++.|+|++|.+|..++..|+..|.  .|++.|++..  .....++....  ..+..+. +-+|   .++       .+.
T Consensus         2 k~~lItG~s~giG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   77 (252)
T PRK07677          2 KVVIITGGSSGMGKAMAKRFAEEGA--NVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFG   77 (252)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4789999999999999999999997  8999998762  22222232211  1222111 1112   212       124


Q ss_pred             CCCEEEEcCCCCCC-C--CCch---hhHHHhhHHHHHHHH----HHHHHhCCCcEEEEecC
Q 022947          114 GMDIVIIPAGVPRK-P--GMTR---DDLFNINAGIVKTLC----EGIAKCCPKAIVNLISN  164 (289)
Q Consensus       114 ~aDiVIitag~~~~-~--g~~r---~d~~~~N~~i~~~i~----~~i~~~~p~aiviv~tN  164 (289)
                      ..|++|.++|.... +  ..+.   ...+..|+.....+.    +.+.+..+.+.++++|.
T Consensus        78 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS  138 (252)
T PRK07677         78 RIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVA  138 (252)
T ss_pred             CccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcC
Confidence            67999999885321 1  2222   234555655444444    44443334567777663

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=96.61  E-value=0.071  Score=47.85  Aligned_cols=32  Identities=25%  Similarity=0.227  Sum_probs=28.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV   81 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~   81 (289)
                      .+.|+||+|.+|..++..|+..|.  +|++.+.+
T Consensus         3 ~~lITGas~gIG~~~a~~l~~~G~--~V~~~~~~   34 (267)
T TIGR02685         3 AAVVTGAAKRIGSSIAVALHQEGY--RVVLHYHR   34 (267)
T ss_pred             EEEEeCCCCcHHHHHHHHHHhCCC--eEEEEcCC
Confidence            688999999999999999999997  88887543

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=96.60  E-value=0.0087  Score=48.73  Aligned_cols=34  Identities=26%  Similarity=0.395  Sum_probs=30.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .||+|+|+ |.+|+.++..|+..|. .++.|+|.+.
T Consensus         3 ~~v~iiG~-G~vGs~va~~L~~~Gv-~~i~lvD~d~   36 (135)
T PF00899_consen    3 KRVLIIGA-GGVGSEVAKNLARSGV-GKITLVDDDI   36 (135)
T ss_dssp             -EEEEEST-SHHHHHHHHHHHHHTT-SEEEEEESSB
T ss_pred             CEEEEECc-CHHHHHHHHHHHHhCC-CceeecCCcc
Confidence            59999998 9999999999999886 6999999875

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.58  E-value=0.0067  Score=57.43  Aligned_cols=72  Identities=21%  Similarity=0.370  Sum_probs=45.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCC-ccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~-~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      +++||+|+||+|++|.-+...|..+++ ..++.++-..+..|+.+.+..    ..+... .. +. ++++++|+||++.+
T Consensus         3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~----~~l~~~-~~-~~-~~~~~vD~vFla~p   75 (336)
T PRK05671          3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAG----KNLRVR-EV-DS-FDFSQVQLAFFAAG   75 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCC----cceEEe-eC-Ch-HHhcCCCEEEEcCC
Confidence            347999999999999999998886542 357777755443343333222    122221 11 22 34789999999864

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.58  E-value=0.047  Score=50.47  Aligned_cols=35  Identities=29%  Similarity=0.336  Sum_probs=31.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .+++.|+||+|.+|..++..|+..|.  .|++.|...
T Consensus        12 ~k~~lVTGas~gIG~~ia~~L~~~Ga--~Vv~~~~~~   46 (306)
T PRK07792         12 GKVAVVTGAAAGLGRAEALGLARLGA--TVVVNDVAS   46 (306)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCc
Confidence            45899999999999999999999997  899998754

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=96.58  E-value=0.0055  Score=59.01  Aligned_cols=77  Identities=14%  Similarity=0.172  Sum_probs=46.8

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhccc-CCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-TNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~-~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      .+++||+|+||+|++|..+...|..++. .||.++..+...|+...-.+.. ....+..+. ..+ .+.++++|+||++.
T Consensus        36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~-~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~-~~~-~~~~~~~DvVf~Al  112 (381)
T PLN02968         36 EEKKRIFVLGASGYTGAEVRRLLANHPD-FEITVMTADRKAGQSFGSVFPHLITQDLPNLV-AVK-DADFSDVDAVFCCL  112 (381)
T ss_pred             ccccEEEEECCCChHHHHHHHHHHhCCC-CeEEEEEChhhcCCCchhhCccccCcccccee-cCC-HHHhcCCCEEEEcC
Confidence            3567999999999999999998888853 3888887654333322111110 001111011 112 23479999999986


Q ss_pred             C
Q 022947          123 G  123 (289)
Q Consensus       123 g  123 (289)
                      +
T Consensus       113 p  113 (381)
T PLN02968        113 P  113 (381)
T ss_pred             C
Confidence            4

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=96.57  E-value=0.0099  Score=59.07  Aligned_cols=96  Identities=16%  Similarity=0.166  Sum_probs=60.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcc----cCCceEEEEecCCCHHhhhCC---CCEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM----DTNAVVRGFLGQQQLEDALTG---MDIV  118 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~----~~~~~v~~~~~t~d~~eal~~---aDiV  118 (289)
                      .++|++||. |.+|+.+|..|+..|+  +|..+|+...+  +.++.+.    .. ..+.   ...++++..+.   +|+|
T Consensus         6 ~~~IG~IGL-G~MG~~mA~nL~~~G~--~V~V~NRt~~k--~~~l~~~~~~~Ga-~~~~---~a~s~~e~v~~l~~~dvI   76 (493)
T PLN02350          6 LSRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSK--VDETVERAKKEGN-LPLY---GFKDPEDFVLSIQKPRSV   76 (493)
T ss_pred             CCCEEEEee-HHHHHHHHHHHHhCCC--eEEEECCCHHH--HHHHHHhhhhcCC-cccc---cCCCHHHHHhcCCCCCEE
Confidence            458999998 9999999999999998  99999987522  2222221    10 1111   12345555554   9999


Q ss_pred             EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCC
Q 022947          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNP  165 (289)
Q Consensus       119 Iitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~-~p~aiviv~tNP  165 (289)
                      |++..               +-+.++++...+... .|..++|-.||-
T Consensus        77 i~~v~---------------~~~aV~~Vi~gl~~~l~~G~iiID~sT~  109 (493)
T PLN02350         77 IILVK---------------AGAPVDQTIKALSEYMEPGDCIIDGGNE  109 (493)
T ss_pred             EEECC---------------CcHHHHHHHHHHHhhcCCCCEEEECCCC
Confidence            99852               123344444444444 367777776654

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=96.56  E-value=0.0065  Score=57.69  Aligned_cols=74  Identities=23%  Similarity=0.271  Sum_probs=44.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEE-EEeCCCchhHHhhhhcc--cCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLH-LYDVVNTPGVTADISHM--DTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~-LvD~~~~~g~~~DL~~~--~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      +||+|+||+|++|..++..|...+.. +++ +++.++..++...-.+.  .....+. +. ..+.++.++++|+||++.+
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~-el~~l~~s~~sagk~~~~~~~~l~~~~~~~-~~-~~~~~~~~~~~DvVf~alP   77 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEV-EITYLVSSRESAGKPVSEVHPHLRGLVDLN-LE-PIDEEEIAEDADVVFLALP   77 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEeccchhcCCChHHhCccccccCCce-ee-cCCHHHhhcCCCEEEECCC
Confidence            58999999999999999988877543 666 66765423332211111  0000111 11 1244444469999999864

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=96.55  E-value=0.068  Score=47.05  Aligned_cols=31  Identities=19%  Similarity=0.206  Sum_probs=26.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEe
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYD   79 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD   79 (289)
                      +.+.|+|++|.+|..++..|+..|.  ++++..
T Consensus         4 k~~lVtG~s~giG~~~a~~l~~~G~--~vv~~~   34 (246)
T PRK12938          4 RIAYVTGGMGGIGTSICQRLHKDGF--KVVAGC   34 (246)
T ss_pred             CEEEEECCCChHHHHHHHHHHHcCC--EEEEEc
Confidence            4689999999999999999999997  777753

>PRK05872 short chain dehydrogenase; Provisional

Probab=96.55  E-value=0.014  Score=53.53  Aligned_cols=114  Identities=23%  Similarity=0.269  Sum_probs=64.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEE-ecCCCH---H-------hhh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGF-LGQQQL---E-------DAL  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~-~~t~d~---~-------eal  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++++++.  .....++...   ..+..+ .+-+|.   +       +.+
T Consensus         9 gk~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~l~~~~~~l~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~~   83 (296)
T PRK05872          9 GKVVVVTGAARGIGAELARRLHARGA--KLALVDLEEAELAALAAELGGD---DRVLTVVADVTDLAAMQAAAEEAVERF   83 (296)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcCC---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999997  8999998762  2222223211   111110 111121   1       123


Q ss_pred             CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHhC--CCcEEEEecC
Q 022947          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCC--PKAIVNLISN  164 (289)
Q Consensus       113 ~~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~~--p~aiviv~tN  164 (289)
                      ...|+||.++|.....   ..+   -.+.+..|+.....+++.+..+-  ..+.|+++|.
T Consensus        84 g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS  143 (296)
T PRK05872         84 GGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSS  143 (296)
T ss_pred             CCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence            5689999999964311   111   12345566655555554443321  3456666654

>PRK06484 short chain dehydrogenase; Validated

Probab=96.53  E-value=0.023  Score=56.16  Aligned_cols=147  Identities=16%  Similarity=0.184  Sum_probs=80.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--hHHhhhhcccCCceEEE-EecCCCHHhh-------hCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRG-FLGQQQLEDA-------LTGM  115 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g~~~DL~~~~~~~~v~~-~~~t~d~~ea-------l~~a  115 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++..  ....++....  ..+.. .....++++.       +...
T Consensus       269 ~k~~lItGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~D~~~~~~~~~~~~~~~~~~g~i  344 (520)
T PRK06484        269 PRVVAITGGARGIGRAVADRFAAAGD--RLLIIDRDAEGAKKLAEALGDEH--LSVQADITDEAAVESAFAQIQARWGRL  344 (520)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCCce--eEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            46899999999999999999999997  89999987521  1111111100  00110 1111112222       2457


Q ss_pred             CEEEEcCCCCC--CC--CCc---hhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCc
Q 022947          116 DIVIIPAGVPR--KP--GMT---RDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR  187 (289)
Q Consensus       116 DiVIitag~~~--~~--g~~---r~d~~~~N~~i~~~i~~~i~~~-~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~k  187 (289)
                      |++|.+||...  .+  ..+   ....+..|+.....+.+.+..+ ...+.|+++|......            +.+..-
T Consensus       345 d~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------~~~~~~  412 (520)
T PRK06484        345 DVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLL------------ALPPRN  412 (520)
T ss_pred             CEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcC------------CCCCCc
Confidence            99999999742  11  112   2334566766555555554443 2356777776543221            233333


Q ss_pred             EEEeeeccHHHHHHHHHHHcC
Q 022947          188 LLGVTMLDVVRANTFVAEVLG  208 (289)
Q Consensus       188 viG~t~lds~R~~~~lA~~l~  208 (289)
                      .++.+..--..+-+.+++.++
T Consensus       413 ~Y~asKaal~~l~~~la~e~~  433 (520)
T PRK06484        413 AYCASKAAVTMLSRSLACEWA  433 (520)
T ss_pred             hhHHHHHHHHHHHHHHHHHhh
Confidence            444433223345566666663

>PRK08324 short chain dehydrogenase; Validated

Probab=96.53  E-value=0.02  Score=59.09  Aligned_cols=114  Identities=22%  Similarity=0.256  Sum_probs=64.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal-------  112 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|++..  .....++...   ..+..+. +-+|   .++++       
T Consensus       422 gk~vLVTGasggIG~~la~~L~~~Ga--~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~  496 (681)
T PRK08324        422 GKVALVTGAAGGIGKATAKRLAAEGA--CVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAF  496 (681)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999999997  8999998762  1112222221   1111110 1112   22222       


Q ss_pred             CCCCEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHH----HHHHHHhCCCcEEEEecC
Q 022947          113 TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTL----CEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       113 ~~aDiVIitag~~~~~---g~~r---~d~~~~N~~i~~~i----~~~i~~~~p~aiviv~tN  164 (289)
                      .+.|+||.++|.....   ..+.   ...+..|+.....+    .+.+++....+.+++++.
T Consensus       497 g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS  558 (681)
T PRK08324        497 GGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIAS  558 (681)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence            3789999999864321   1111   12344555544444    444444333356666553

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=96.52  E-value=0.0028  Score=60.66  Aligned_cols=73  Identities=25%  Similarity=0.305  Sum_probs=44.4

Q ss_pred             EEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--hHHhhhhcccCCceEEEE--ecCCCHHhhhCCCCEEEEcCCC
Q 022947           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGF--LGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g~~~DL~~~~~~~~v~~~--~~t~d~~eal~~aDiVIitag~  124 (289)
                      |.|+|+ |.||+.++..|++.+...+|++.|++...  ....++ ... .......  ....++.+.++++|+||.|+|.
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~-~~~-~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp   77 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL-LGD-RVEAVQVDVNDPESLAELLRGCDVVINCAGP   77 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT---TTT-TEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc-ccc-ceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence            789999 99999999999988765699999998632  222211 111 1111111  1112356778999999999874

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=96.51  E-value=0.011  Score=54.73  Aligned_cols=95  Identities=23%  Similarity=0.257  Sum_probs=59.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      ..||+|+|+ |.+|..++..|...|.  +|.++|+++...  ..+....    ...+. ..++.+.++++|+||.+....
T Consensus       151 gk~v~IiG~-G~iG~avA~~L~~~G~--~V~v~~R~~~~~--~~~~~~g----~~~~~-~~~l~~~l~~aDiVint~P~~  220 (287)
T TIGR02853       151 GSNVMVLGF-GRTGMTIARTFSALGA--RVFVGARSSADL--ARITEMG----LIPFP-LNKLEEKVAEIDIVINTIPAL  220 (287)
T ss_pred             CCEEEEEcC-hHHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHHCC----Ceeec-HHHHHHHhccCCEEEECCChH
Confidence            458999998 9999999999998886  899999875211  1111111    11111 134667889999999985211


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEe-cCCCcc
Q 022947          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI-SNPVNS  168 (289)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~-tNPvd~  168 (289)
                               ++  +    .+   .+....|+++++.+ ++|-.+
T Consensus       221 ---------ii--~----~~---~l~~~k~~aliIDlas~Pg~t  246 (287)
T TIGR02853       221 ---------VL--T----AD---VLSKLPKHAVIIDLASKPGGT  246 (287)
T ss_pred             ---------Hh--C----HH---HHhcCCCCeEEEEeCcCCCCC
Confidence                     11  1    11   23334567888766 677654

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK06114 short chain dehydrogenase; Provisional

Probab=96.51  E-value=0.027  Score=50.17  Aligned_cols=35  Identities=31%  Similarity=0.420  Sum_probs=31.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .+++.|+|++|.+|..++..|+..|.  +|++.|++.
T Consensus         8 ~k~~lVtG~s~gIG~~ia~~l~~~G~--~v~~~~r~~   42 (254)
T PRK06114          8 GQVAFVTGAGSGIGQRIAIGLAQAGA--DVALFDLRT   42 (254)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            34899999999999999999999997  899999865

>PRK06483 dihydromonapterin reductase; Provisional

Probab=96.50  E-value=0.07  Score=46.77  Aligned_cols=35  Identities=17%  Similarity=0.107  Sum_probs=31.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      ++++.|+|++|.+|..++..|+..|.  +|++.|+++
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~   36 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQ--PVIVSYRTH   36 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCc
Confidence            35799999999999999999999997  899999876

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.50  E-value=0.024  Score=50.17  Aligned_cols=35  Identities=31%  Similarity=0.464  Sum_probs=31.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      ..||+|+|+ |.+|+.++..|+..|. .++.++|.+.
T Consensus        28 ~~~V~ViG~-GglGs~ia~~La~~Gv-g~i~lvD~D~   62 (212)
T PRK08644         28 KAKVGIAGA-GGLGSNIAVALARSGV-GNLKLVDFDV   62 (212)
T ss_pred             CCCEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence            458999998 9999999999999986 5899999884

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=96.49  E-value=0.0042  Score=57.21  Aligned_cols=107  Identities=21%  Similarity=0.316  Sum_probs=71.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhC----CCc-----cEEEEEeCCC--chhHHhhhhccc---C-CceEEEEecCCCHHh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKIN----PLV-----SVLHLYDVVN--TPGVTADISHMD---T-NAVVRGFLGQQQLED  110 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~----g~~-----~eI~LvD~~~--~~g~~~DL~~~~---~-~~~v~~~~~t~d~~e  110 (289)
                      ..||.|.|| |.-|..++..|...    |+-     ..++++|.+-  .... .||.+..   . ...-.   ...++.|
T Consensus        25 d~~iv~~GA-GsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r-~~l~~~~~~~a~~~~~~---~~~~L~e   99 (279)
T cd05312          25 DQRILFLGA-GSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDR-KDLTPFKKPFARKDEEK---EGKSLLE   99 (279)
T ss_pred             hcEEEEECc-CHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCC-CcchHHHHHHHhhcCcc---cCCCHHH
Confidence            459999999 99999999777653    652     5899999875  1111 1121110   0 00001   1247899


Q ss_pred             hhC--CCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCc--ccHH
Q 022947          111 ALT--GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN--STVP  171 (289)
Q Consensus       111 al~--~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd--~~t~  171 (289)
                      +++  ++|++|=+.+.+   |           -+.+++.+.|.+++++.+|+-.|||..  -+++
T Consensus       100 ~i~~v~ptvlIG~S~~~---g-----------~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~p  150 (279)
T cd05312         100 VVKAVKPTVLIGLSGVG---G-----------AFTEEVVRAMAKSNERPIIFALSNPTSKAECTA  150 (279)
T ss_pred             HHHhcCCCEEEEeCCCC---C-----------CCCHHHHHHHHhcCCCCEEEECCCcCCccccCH
Confidence            999  999988765433   2           124678889999999999999999986  4554

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.49  E-value=0.058  Score=48.80  Aligned_cols=35  Identities=23%  Similarity=0.209  Sum_probs=29.3

Q ss_pred             CCEEEEEcCCC--ccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG--~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .+.+.|+||++  -+|..++..|++.|.  .|++.|++.
T Consensus         6 ~k~~lITGas~~~GIG~aia~~la~~G~--~vil~~r~~   42 (262)
T PRK07984          6 GKRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQND   42 (262)
T ss_pred             CCEEEEeCCCCCccHHHHHHHHHHHCCC--EEEEEecch
Confidence            45789999953  699999999999997  889988764

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=96.49  E-value=0.087  Score=46.02  Aligned_cols=31  Identities=19%  Similarity=0.220  Sum_probs=27.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV   80 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~   80 (289)
                      .+.|+|++|.+|..++..|+..|.  +++++..
T Consensus         2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r   32 (242)
T TIGR01829         2 IALVTGGMGGIGTAICQRLAKDGY--RVAANCG   32 (242)
T ss_pred             EEEEECCCChHHHHHHHHHHHCCC--EEEEEeC
Confidence            578999999999999999999997  7888876

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=96.49  E-value=0.0082  Score=57.03  Aligned_cols=72  Identities=24%  Similarity=0.390  Sum_probs=46.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCC-ccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~-~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      .++||+|+||+|++|..+...|..+++ ..++..+...+..|+..+...    ..+..-  ..+ .+++.++|+||++++
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~----~~~~v~--~~~-~~~~~~~D~vf~a~p   78 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEG----RDYTVE--ELT-EDSFDGVDIALFSAG   78 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecC----ceeEEE--eCC-HHHHcCCCEEEECCC
Confidence            457999999999999999988887543 357777755443333332211    122221  113 256799999999875

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=96.48  E-value=0.041  Score=51.69  Aligned_cols=96  Identities=16%  Similarity=0.135  Sum_probs=59.0

Q ss_pred             CEEEEEcCCCc--------------------cHHHHHHHHHhCCCccEEEEEeCCCc---hhHHhhhhcccCCceEEEEe
Q 022947           47 FKVAVLGAAGG--------------------IGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFL  103 (289)
Q Consensus        47 ~KI~IIGaaG~--------------------VGs~la~~L~~~g~~~eI~LvD~~~~---~g~~~DL~~~~~~~~v~~~~  103 (289)
                      |||+|-|| |+                    =|+.+|..|+..|+  +|+++|+++.   ......+.+...    ..  
T Consensus         1 ~~~~~~g~-gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGh--eV~V~Drnrsa~e~e~~e~LaeaGA----~~--   71 (341)
T TIGR01724         1 MKVSVYGA-GNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGH--DVVLAEPNREFMSDDLWKKVEDAGV----KV--   71 (341)
T ss_pred             CeeEEecC-cchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhHHHHHCCC----ee--
Confidence            57888887 74                    47889999999998  9999998762   122233333221    11  


Q ss_pred             cCCCHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 022947          104 GQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (289)
Q Consensus       104 ~t~d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd  167 (289)
                       .++..++.+++|+||++..               |-+.++++++.+....+.+.+++-+-.++
T Consensus        72 -AaS~aEAAa~ADVVIL~LP---------------d~aaV~eVl~GLaa~L~~GaIVID~STIs  119 (341)
T TIGR01724        72 -VSDDKEAAKHGEIHVLFTP---------------FGKGTFSIARTIIEHVPENAVICNTCTVS  119 (341)
T ss_pred             -cCCHHHHHhCCCEEEEecC---------------CHHHHHHHHHHHHhcCCCCCEEEECCCCC
Confidence             2356789999999999853               33444555555555554433333333333

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.48  E-value=0.023  Score=50.01  Aligned_cols=35  Identities=23%  Similarity=0.362  Sum_probs=31.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .+++.|+|++|.+|..++..|+..|.  .|+++|.++
T Consensus         5 ~~~~lItG~~g~iG~~~a~~l~~~G~--~vi~~~r~~   39 (253)
T PRK08217          5 DKVIVITGGAQGLGRAMAEYLAQKGA--KLALIDLNQ   39 (253)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            45899999999999999999999887  899999876

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=96.47  E-value=0.022  Score=52.30  Aligned_cols=70  Identities=26%  Similarity=0.250  Sum_probs=45.2

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhC--CCccEEE-EEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEE
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKIN--PLVSVLH-LYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~--g~~~eI~-LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIi  120 (289)
                      ++++||+|||. |.+|..++..|...  ++  +|+ ++|.++..  +.++.... . ....   .+++++.+.++|+|++
T Consensus         4 m~~irIGIIG~-G~IG~~~a~~L~~~~~~~--el~aV~dr~~~~--a~~~a~~~-g-~~~~---~~~~eell~~~D~Vvi   73 (271)
T PRK13302          4 RPELRVAIAGL-GAIGKAIAQALDRGLPGL--TLSAVAVRDPQR--HADFIWGL-R-RPPP---VVPLDQLATHADIVVE   73 (271)
T ss_pred             CCeeEEEEECc-cHHHHHHHHHHHhcCCCe--EEEEEECCCHHH--HHHHHHhc-C-CCcc---cCCHHHHhcCCCEEEE
Confidence            45679999998 99999999888763  43  554 77876522  12222110 0 0011   2356777899999999


Q ss_pred             cCC
Q 022947          121 PAG  123 (289)
Q Consensus       121 tag  123 (289)
                      +++
T Consensus        74 ~tp   76 (271)
T PRK13302         74 AAP   76 (271)
T ss_pred             CCC
Confidence            975

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=96.44  E-value=0.14  Score=46.44  Aligned_cols=68  Identities=26%  Similarity=0.276  Sum_probs=43.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      ++||+|+|++|.+|+.++..+...+-..-+.++|.+.......  .    ...+.   ..+|+++.++++|+||.+.
T Consensus         1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~--~----~~~i~---~~~dl~~ll~~~DvVid~t   68 (257)
T PRK00048          1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ--G----ALGVA---ITDDLEAVLADADVLIDFT   68 (257)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc--C----CCCcc---ccCCHHHhccCCCEEEECC
Confidence            4799999988999999998777654333344577765211111  1    11222   1357777788999999664

>PRK06940 short chain dehydrogenase; Provisional

Probab=96.43  E-value=0.029  Score=50.96  Aligned_cols=112  Identities=19%  Similarity=0.205  Sum_probs=61.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhh------hCCC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDA------LTGM  115 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea------l~~a  115 (289)
                      .+.|+|+ |.+|..++..|. .|.  +|++.|+++.  .....++...  ..++..+. +-.|   .++.      +...
T Consensus         4 ~~lItGa-~gIG~~la~~l~-~G~--~Vv~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~i   77 (275)
T PRK06940          4 VVVVIGA-GGIGQAIARRVG-AGK--KVLLADYNEENLEAAAKTLREA--GFDVSTQEVDVSSRESVKALAATAQTLGPV   77 (275)
T ss_pred             EEEEECC-ChHHHHHHHHHh-CCC--EEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEeecCCHHHHHHHHHHHHhcCCC
Confidence            4666776 899999999886 676  8999998752  1112223221  11222111 1112   2222      2468


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCCC
Q 022947          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPV  166 (289)
Q Consensus       116 DiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~-~p~aiviv~tNPv  166 (289)
                      |++|.+||.... ..+-.+.+..|+.....+++.+.+. .+++.+++++...
T Consensus        78 d~li~nAG~~~~-~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~  128 (275)
T PRK06940         78 TGLVHTAGVSPS-QASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQS  128 (275)
T ss_pred             CEEEECCCcCCc-hhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecc
Confidence            999999997532 2233456677776665555555443 1334445554433

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.42  E-value=0.031  Score=49.93  Aligned_cols=35  Identities=23%  Similarity=0.159  Sum_probs=30.1

Q ss_pred             CCEEEEEcCC--CccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaa--G~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .+.+.|+||+  +-+|..++..|+..|.  +|++.++++
T Consensus         7 ~k~~lItGas~~~gIG~a~a~~la~~G~--~Vi~~~r~~   43 (252)
T PRK06079          7 GKKIVVMGVANKRSIAWGCAQAIKDQGA--TVIYTYQND   43 (252)
T ss_pred             CCEEEEeCCCCCCchHHHHHHHHHHCCC--EEEEecCch
Confidence            3579999997  5899999999999997  899998764

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.41  E-value=0.049  Score=53.01  Aligned_cols=118  Identities=20%  Similarity=0.240  Sum_probs=68.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEE-EEecCCCHHhh-------hCCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLEDA-------LTGMD  116 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~-~~~~t~d~~ea-------l~~aD  116 (289)
                      +.+++.|+|++|.+|..++..|+..|.  +|+++|.........++........+. ......+.++.       +...|
T Consensus       209 ~g~~vlItGasggIG~~la~~l~~~Ga--~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id  286 (450)
T PRK08261        209 AGKVALVTGAARGIGAAIAEVLARDGA--HVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLD  286 (450)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCC
Confidence            346899999999999999999999997  899998854221112221110000111 11111111111       23689


Q ss_pred             EEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 022947          117 IVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (289)
Q Consensus       117 iVIitag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tN  164 (289)
                      +||+++|.....   ..+   ....+..|+.....+.+.+...   .+.+.|+++|.
T Consensus       287 ~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS  343 (450)
T PRK08261        287 IVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSS  343 (450)
T ss_pred             EEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECC
Confidence            999999865321   111   2234567777777777766552   24566776664

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=96.41  E-value=0.014  Score=58.59  Aligned_cols=92  Identities=25%  Similarity=0.345  Sum_probs=59.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      .++|+|+|. |.+|+.+|..|...|.  +|+.+|.........++.       +..   .+++++.+++||+|+++....
T Consensus       138 gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~g-------~~~---~~~l~ell~~aDvV~l~lPlt  204 (525)
T TIGR01327       138 GKTLGVIGL-GRIGSIVAKRAKAFGM--KVLAYDPYISPERAEQLG-------VEL---VDDLDELLARADFITVHTPLT  204 (525)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhcC-------CEE---cCCHHHHHhhCCEEEEccCCC
Confidence            468999998 9999999999988887  999999753221222211       111   135788899999999985321


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                        + +++. ++  |       .+.+....|.+++++++
T Consensus       205 --~-~T~~-li--~-------~~~l~~mk~ga~lIN~a  229 (525)
T TIGR01327       205 --P-ETRG-LI--G-------AEELAKMKKGVIIVNCA  229 (525)
T ss_pred             --h-hhcc-Cc--C-------HHHHhcCCCCeEEEEcC
Confidence              1 1111 11  1       13344445788888875

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.41  E-value=0.024  Score=53.69  Aligned_cols=35  Identities=23%  Similarity=0.253  Sum_probs=31.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      ..||.|||+ |.+|+.++..|+..|+ .+|.++|.+.
T Consensus        24 ~~~VlIiG~-GglGs~va~~La~aGv-g~i~lvD~D~   58 (338)
T PRK12475         24 EKHVLIVGA-GALGAANAEALVRAGI-GKLTIADRDY   58 (338)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCc
Confidence            458999998 9999999999999995 5999999875

>PRK06484 short chain dehydrogenase; Validated

Probab=96.41  E-value=0.034  Score=54.95  Aligned_cols=35  Identities=29%  Similarity=0.211  Sum_probs=31.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .+.+.|+|+++.+|..++..|+..|.  .|+++|++.
T Consensus         5 ~k~~lITGas~gIG~aia~~l~~~G~--~V~~~~r~~   39 (520)
T PRK06484          5 SRVVLVTGAAGGIGRAACQRFARAGD--QVVVADRNV   39 (520)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            35788999999999999999999997  899999875

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=96.39  E-value=0.015  Score=53.58  Aligned_cols=61  Identities=18%  Similarity=0.294  Sum_probs=44.1

Q ss_pred             EEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           51 VLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        51 IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      |||. |.+|..++..|+..|+  +|.++|+++..  ..++....    ..   .+.++.++++++|+||++..
T Consensus         1 ~IGl-G~mG~~mA~~L~~~G~--~V~v~dr~~~~--~~~l~~~g----~~---~~~s~~~~~~~advVil~vp   61 (288)
T TIGR01692         1 FIGL-GNMGGPMAANLLKAGH--PVRVFDLFPDA--VEEAVAAG----AQ---AAASPAEAAEGADRVITMLP   61 (288)
T ss_pred             CCcc-cHhHHHHHHHHHhCCC--eEEEEeCCHHH--HHHHHHcC----Ce---ecCCHHHHHhcCCEEEEeCC
Confidence            5798 9999999999999998  89999987622  22222211    11   12356788999999999863

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK08017 oxidoreductase; Provisional

Probab=96.38  E-value=0.048  Score=48.23  Aligned_cols=34  Identities=21%  Similarity=0.146  Sum_probs=30.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      ++|.|+||+|.+|..++..|+..|.  +|++++++.
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~--~v~~~~r~~   36 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGY--RVLAACRKP   36 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4799999999999999999999887  889998865

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=96.37  E-value=0.0091  Score=56.53  Aligned_cols=72  Identities=24%  Similarity=0.287  Sum_probs=46.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCC-CccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g-~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      +.+||+|+||+|++|..+...|..+. ...+|.++-.....|+...+...    .+.... . + +.++.++|+||++++
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~----~~~v~~-~-~-~~~~~~~Dvvf~a~p   75 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGK----SVTVQD-A-A-EFDWSQAQLAFFVAG   75 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCc----ceEEEe-C-c-hhhccCCCEEEECCC
Confidence            45799999999999999999888742 23488888554434443332211    223211 1 2 244589999999864

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=96.37  E-value=0.025  Score=53.03  Aligned_cols=65  Identities=17%  Similarity=0.199  Sum_probs=43.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      .+||+|||+ |.+|.+++..|...|+  +++..+....... ..+....    +..   . +..+++++||+|+++.
T Consensus         3 ~kkIgiIG~-G~mG~AiA~~L~~sG~--~Viv~~~~~~~~~-~~a~~~G----v~~---~-s~~ea~~~ADiVvLaV   67 (314)
T TIGR00465         3 GKTVAIIGY-GSQGHAQALNLRDSGL--NVIVGLRKGGASW-KKATEDG----FKV---G-TVEEAIPQADLIMNLL   67 (314)
T ss_pred             cCEEEEEeE-cHHHHHHHHHHHHCCC--eEEEEECcChhhH-HHHHHCC----CEE---C-CHHHHHhcCCEEEEeC
Confidence            468999998 9999999999999887  6666554331111 1111111    111   1 3567899999999985

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=96.35  E-value=0.039  Score=45.23  Aligned_cols=33  Identities=24%  Similarity=0.498  Sum_probs=29.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      ||.|+|+ |.+|+.++..|+..|. .++.++|.+.
T Consensus         1 ~VliiG~-GglGs~ia~~L~~~Gv-~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGL-GGLGSEIALNLARSGV-GKITLIDFDT   33 (143)
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC-CEEEEEcCCC
Confidence            6899998 9999999999999996 6899999874

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.33  E-value=0.018  Score=53.44  Aligned_cols=67  Identities=19%  Similarity=0.185  Sum_probs=47.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      ...||.|+|+ |.+|..++..|...|.  +|..+|++.. ...+.++   .  ....   ...++.+.++++|+||.|.
T Consensus       151 ~g~kvlViG~-G~iG~~~a~~L~~~Ga--~V~v~~r~~~~~~~~~~~---G--~~~~---~~~~l~~~l~~aDiVI~t~  218 (296)
T PRK08306        151 HGSNVLVLGF-GRTGMTLARTLKALGA--NVTVGARKSAHLARITEM---G--LSPF---HLSELAEEVGKIDIIFNTI  218 (296)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHc---C--Ceee---cHHHHHHHhCCCCEEEECC
Confidence            3569999998 9999999999988886  9999998752 2222211   1  1111   1135667889999999985

>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative

Probab=96.32  E-value=0.05  Score=47.66  Aligned_cols=114  Identities=15%  Similarity=0.154  Sum_probs=62.2

Q ss_pred             EEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-c--hhHHhhhhcccCCceEEEEe-cCCC---HHhh-------hCC
Q 022947           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------LTG  114 (289)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------l~~  114 (289)
                      |.|+||+|.+|..++..|++.|.  ++++++... .  .....++.+..  .++..+. +-++   .++.       +..
T Consensus         1 vlItGas~giG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   76 (239)
T TIGR01831         1 VLVTGASRGIGRAIANRLAADGF--EICVHYHSGRSDAESVVSAIQAQG--GNARLLQFDVADRVACRTLLEADIAEHGA   76 (239)
T ss_pred             CEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CeEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            46999999999999999999997  788887643 1  11122232211  1222211 1111   1122       235


Q ss_pred             CCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHH----HHhCCCcEEEEecCCC
Q 022947          115 MDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNPV  166 (289)
Q Consensus       115 aDiVIitag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i----~~~~p~aiviv~tNPv  166 (289)
                      .|.+|.++|......   .+   -...+..|+.....+.+.+    .+..+.+.++++|.+.
T Consensus        77 i~~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~  138 (239)
T TIGR01831        77 YYGVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVS  138 (239)
T ss_pred             CCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchh
Confidence            689999988643221   11   2335566665544444432    2223456666666544

This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=96.32  E-value=0.021  Score=50.96  Aligned_cols=98  Identities=23%  Similarity=0.336  Sum_probs=62.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCcc--EEEEEeCCC----chh-----HHhhhhcccCCceEEEEecCCCHHhhhCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVS--VLHLYDVVN----TPG-----VTADISHMDTNAVVRGFLGQQQLEDALTG  114 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~--eI~LvD~~~----~~g-----~~~DL~~~~~~~~v~~~~~t~d~~eal~~  114 (289)
                      .+||.|+|| |..|..++..|...|. .  +|+++|++.    .+.     ...++.+......   .  ..++.+++++
T Consensus        25 ~~rvlvlGA-GgAg~aiA~~L~~~G~-~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~---~--~~~l~~~l~~   97 (226)
T cd05311          25 EVKIVINGA-GAAGIAIARLLLAAGA-KPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK---T--GGTLKEALKG   97 (226)
T ss_pred             CCEEEEECc-hHHHHHHHHHHHHcCc-CcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc---c--cCCHHHHHhc
Confidence            459999999 9999999999988875 4  899999983    111     1122222110001   1  1256688999


Q ss_pred             CCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcc
Q 022947          115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS  168 (289)
Q Consensus       115 aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~  168 (289)
                      +|++|-+.+    +|+     +  +    .+..+.|   ++..+++..+||...
T Consensus        98 ~dvlIgaT~----~G~-----~--~----~~~l~~m---~~~~ivf~lsnP~~e  133 (226)
T cd05311          98 ADVFIGVSR----PGV-----V--K----KEMIKKM---AKDPIVFALANPVPE  133 (226)
T ss_pred             CCEEEeCCC----CCC-----C--C----HHHHHhh---CCCCEEEEeCCCCCc
Confidence            999998864    233     1  1    2333333   367788888999753

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=96.31  E-value=0.011  Score=50.63  Aligned_cols=93  Identities=29%  Similarity=0.391  Sum_probs=58.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC-
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV-  124 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~-  124 (289)
                      .++|+|+|. |.+|+.+|..+..-|.  +|+.+|+......  ...+.    .+.    ..++++.++.||+|+++... 
T Consensus        36 g~tvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~--~~~~~----~~~----~~~l~ell~~aDiv~~~~plt  102 (178)
T PF02826_consen   36 GKTVGIIGY-GRIGRAVARRLKAFGM--RVIGYDRSPKPEE--GADEF----GVE----YVSLDELLAQADIVSLHLPLT  102 (178)
T ss_dssp             TSEEEEEST-SHHHHHHHHHHHHTT---EEEEEESSCHHHH--HHHHT----TEE----ESSHHHHHHH-SEEEE-SSSS
T ss_pred             CCEEEEEEE-cCCcCeEeeeeecCCc--eeEEecccCChhh--hcccc----cce----eeehhhhcchhhhhhhhhccc
Confidence            459999998 9999999999998887  9999998763221  01111    111    13678899999999998632 


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCC
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNP  165 (289)
                      +...+.       -|.       +.+++..|.+++|+++--
T Consensus       103 ~~T~~l-------i~~-------~~l~~mk~ga~lvN~aRG  129 (178)
T PF02826_consen  103 PETRGL-------INA-------EFLAKMKPGAVLVNVARG  129 (178)
T ss_dssp             TTTTTS-------BSH-------HHHHTSTTTEEEEESSSG
T ss_pred             ccccee-------eee-------eeeeccccceEEEeccch
Confidence            211121       121       223445578899998643

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=96.30  E-value=0.01  Score=55.99  Aligned_cols=75  Identities=24%  Similarity=0.208  Sum_probs=46.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccC--CceEEEEecCCCHHh-hhCCCCEEEEc
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--NAVVRGFLGQQQLED-ALTGMDIVIIP  121 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~--~~~v~~~~~t~d~~e-al~~aDiVIit  121 (289)
                      +++||+|+||+|+.|.-+..+|...+.. |+.++...+..|+...-.+...  ...+...  +.|.++ ...+||+||++
T Consensus         1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~v-e~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~--~~~~~~~~~~~~DvvFla   77 (349)
T COG0002           1 MMIKVGIVGASGYTGLELLRLLAGHPDV-ELILISSRERAGKPVSDVHPNLRGLVDLPFQ--TIDPEKIELDECDVVFLA   77 (349)
T ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCe-EEEEeechhhcCCchHHhCcccccccccccc--cCChhhhhcccCCEEEEe
Confidence            3679999999999999999999888754 6888876553444332222211  1112221  112222 24569999998


Q ss_pred             C
Q 022947          122 A  122 (289)
Q Consensus       122 a  122 (289)
                      -
T Consensus        78 l   78 (349)
T COG0002          78 L   78 (349)
T ss_pred             c
Confidence            3

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=96.29  E-value=0.038  Score=56.33  Aligned_cols=138  Identities=14%  Similarity=0.194  Sum_probs=81.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCH---H-hhhCCCCEEEEc
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQL---E-DALTGMDIVIIP  121 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~---~-eal~~aDiVIit  121 (289)
                      .++|.|+|. |.+|+.++..|...++  +++++|.|+..  +..+.+.. .+-+.+  +.++.   + ..+++||.+|++
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~~--v~~~~~~g-~~v~~G--Dat~~~~L~~agi~~A~~vv~~  471 (601)
T PRK03659        400 KPQVIIVGF-GRFGQVIGRLLMANKM--RITVLERDISA--VNLMRKYG-YKVYYG--DATQLELLRAAGAEKAEAIVIT  471 (601)
T ss_pred             cCCEEEecC-chHHHHHHHHHHhCCC--CEEEEECCHHH--HHHHHhCC-CeEEEe--eCCCHHHHHhcCCccCCEEEEE
Confidence            458999998 9999999999998888  89999998732  12222221 111111  11221   1 235799999998


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEe-cCCCcccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHH
Q 022947          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI-SNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRAN  200 (289)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~-tNPvd~~t~~~~~~~~~~~~~~~~kviG~t~lds~R~~  200 (289)
                      .+..           ..|    ..++..+++..|+..++.- .||.+.      +.+++. |  .+.|+=-+..-+.++-
T Consensus       472 ~~d~-----------~~n----~~i~~~~r~~~p~~~IiaRa~~~~~~------~~L~~~-G--a~~vv~e~~es~l~l~  527 (601)
T PRK03659        472 CNEP-----------EDT----MKIVELCQQHFPHLHILARARGRVEA------HELLQA-G--VTQFSRETFSSALELG  527 (601)
T ss_pred             eCCH-----------HHH----HHHHHHHHHHCCCCeEEEEeCCHHHH------HHHHhC-C--CCEEEccHHHHHHHHH
Confidence            4311           223    3356667788898776654 455433      233433 2  3455443433344444


Q ss_pred             HHHHHHcCCCCccee
Q 022947          201 TFVAEVLGLDPREVD  215 (289)
Q Consensus       201 ~~lA~~l~v~~~~V~  215 (289)
                      ...=..+|+++++++
T Consensus       528 ~~~L~~lg~~~~~~~  542 (601)
T PRK03659        528 RKTLVSLGMHPHQAQ  542 (601)
T ss_pred             HHHHHHcCCCHHHHH
Confidence            455566788887774

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.28  E-value=0.22  Score=45.15  Aligned_cols=35  Identities=17%  Similarity=0.134  Sum_probs=29.7

Q ss_pred             CCEEEEEcCCC--ccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG--~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .+.+.|+||++  -+|..++..|+..|.  .|++.++++
T Consensus         7 ~k~~lVTGas~~~GIG~aiA~~la~~Ga--~V~~~~r~~   43 (271)
T PRK06505          7 GKRGLIMGVANDHSIAWGIAKQLAAQGA--ELAFTYQGE   43 (271)
T ss_pred             CCEEEEeCCCCCCcHHHHHHHHHHhCCC--EEEEecCch
Confidence            35788999964  799999999999997  899998765

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.27  E-value=0.011  Score=56.31  Aligned_cols=71  Identities=25%  Similarity=0.482  Sum_probs=47.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCC-C-ccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINP-L-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g-~-~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      .+||+|+||+|+||..+...|...+ + ..+|.++......|+...+..    ..+....  .+. +.++++|+||++++
T Consensus         5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~----~~l~v~~--~~~-~~~~~~Divf~a~~   77 (347)
T PRK06728          5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKG----REIIIQE--AKI-NSFEGVDIAFFSAG   77 (347)
T ss_pred             CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCC----cceEEEe--CCH-HHhcCCCEEEECCC
Confidence            4699999999999999999888544 3 345888876554444443322    1233221  233 56799999999865

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.24  E-value=0.016  Score=53.98  Aligned_cols=56  Identities=21%  Similarity=0.353  Sum_probs=46.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      ..++|+|||.+|.||..++..|...|.  .|.+++...                       .++++.++.||+||.+.|.
T Consensus       158 ~Gk~V~vIG~s~ivG~PmA~~L~~~ga--tVtv~~~~t-----------------------~~l~e~~~~ADIVIsavg~  212 (301)
T PRK14194        158 TGKHAVVIGRSNIVGKPMAALLLQAHC--SVTVVHSRS-----------------------TDAKALCRQADIVVAAVGR  212 (301)
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHCCC--EEEEECCCC-----------------------CCHHHHHhcCCEEEEecCC
Confidence            367999999966999999999999987  888885421                       2466889999999999886


Q ss_pred             C
Q 022947          125 P  125 (289)
Q Consensus       125 ~  125 (289)
                      +
T Consensus       213 ~  213 (301)
T PRK14194        213 P  213 (301)
T ss_pred             h
Confidence            5

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.22  E-value=0.034  Score=52.75  Aligned_cols=35  Identities=20%  Similarity=0.283  Sum_probs=31.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      ..||.|+|+ |.+|+.++..|+..|+ .+|.++|.+.
T Consensus        24 ~~~VlVvG~-GglGs~va~~La~aGv-g~i~lvD~D~   58 (339)
T PRK07688         24 EKHVLIIGA-GALGTANAEMLVRAGV-GKVTIVDRDY   58 (339)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCCc
Confidence            458999999 9999999999999996 6999999874

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=96.22  E-value=0.019  Score=57.58  Aligned_cols=93  Identities=25%  Similarity=0.329  Sum_probs=60.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      ..++|+|+|. |.+|+.+|..+...|.  +|+.+|.........++       .+..   . ++++.++.||+|+++...
T Consensus       139 ~gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~-------g~~~---~-~l~ell~~aDiV~l~lP~  204 (526)
T PRK13581        139 YGKTLGIIGL-GRIGSEVAKRAKAFGM--KVIAYDPYISPERAAQL-------GVEL---V-SLDELLARADFITLHTPL  204 (526)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhc-------CCEE---E-cHHHHHhhCCEEEEccCC
Confidence            3568999998 9999999999988887  99999975422121111       1111   1 467889999999998532


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      .  + +++. ++  |       .+.+....|.+++++++-
T Consensus       205 t--~-~t~~-li--~-------~~~l~~mk~ga~lIN~aR  231 (526)
T PRK13581        205 T--P-ETRG-LI--G-------AEELAKMKPGVRIINCAR  231 (526)
T ss_pred             C--h-Hhhc-Cc--C-------HHHHhcCCCCeEEEECCC
Confidence            2  1 1111 11  2       133444458889988863

>PRK06125 short chain dehydrogenase; Provisional

Probab=96.20  E-value=0.18  Score=44.87  Aligned_cols=115  Identities=17%  Similarity=0.152  Sum_probs=64.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCCH---H---hhhCCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL---E---DALTGMD  116 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~---~---eal~~aD  116 (289)
                      .+++.|+|++|.+|..++..|+..|.  +|+++|+++.  .....++.... ..++..+. +-++.   .   +.+...|
T Consensus         7 ~k~vlItG~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~id   83 (259)
T PRK06125          7 GKRVLITGASKGIGAAAAEAFAAEGC--HLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDID   83 (259)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCCC
Confidence            35899999999999999999999987  8999998762  11122232211 11121111 11121   1   2246799


Q ss_pred             EEEEcCCCCCC-C--CCch---hhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 022947          117 IVIIPAGVPRK-P--GMTR---DDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       117 iVIitag~~~~-~--g~~r---~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      ++|.++|.... +  ..+.   ...+..|+..    .+.+.+.+.+.. .+.++++|.
T Consensus        84 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~iss  140 (259)
T PRK06125         84 ILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARG-SGVIVNVIG  140 (259)
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEecC
Confidence            99999986421 1  1111   2234556553    444444554432 345555543

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=96.19  E-value=0.02  Score=49.99  Aligned_cols=75  Identities=21%  Similarity=0.259  Sum_probs=50.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      ..++|+|||-|.-||..++.+|+.++-  .|.++|++.-  ......+.|...  ....  -+.++.+.++.||+||.++
T Consensus        61 ~GK~vvVIGrS~iVGkPla~lL~~~~A--tVti~~~~~~~~~~~~~~~~hs~t--~~~~--~~~~l~~~~~~ADIVIsAv  134 (197)
T cd01079          61 YGKTITIINRSEVVGRPLAALLANDGA--RVYSVDINGIQVFTRGESIRHEKH--HVTD--EEAMTLDCLSQSDVVITGV  134 (197)
T ss_pred             CCCEEEEECCCccchHHHHHHHHHCCC--EEEEEecCcccccccccccccccc--cccc--hhhHHHHHhhhCCEEEEcc
Confidence            356999999999999999999998885  8999988651  111111122211  0000  0112567889999999999


Q ss_pred             CCC
Q 022947          123 GVP  125 (289)
Q Consensus       123 g~~  125 (289)
                      |.+
T Consensus       135 G~~  137 (197)
T cd01079         135 PSP  137 (197)
T ss_pred             CCC
Confidence            866

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=96.18  E-value=0.024  Score=55.94  Aligned_cols=90  Identities=23%  Similarity=0.223  Sum_probs=60.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchh-HHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g-~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      ..++|+|+|. |.||..+|..+...|.  +|+.+|+++... .+..  +.   ..+      .+++++++.+|+||.+.|
T Consensus       253 aGKtVgVIG~-G~IGr~vA~rL~a~Ga--~ViV~e~dp~~a~~A~~--~G---~~~------~~leell~~ADIVI~atG  318 (476)
T PTZ00075        253 AGKTVVVCGY-GDVGKGCAQALRGFGA--RVVVTEIDPICALQAAM--EG---YQV------VTLEDVVETADIFVTATG  318 (476)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHh--cC---cee------ccHHHHHhcCCEEEECCC
Confidence            3568999998 9999999999988887  899998876322 1111  11   111      146788999999999865


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCC
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNP  165 (289)
                      .+               .++.  .+.+....|.+++++++-.
T Consensus       319 t~---------------~iI~--~e~~~~MKpGAiLINvGr~  343 (476)
T PTZ00075        319 NK---------------DIIT--LEHMRRMKNNAIVGNIGHF  343 (476)
T ss_pred             cc---------------cccC--HHHHhccCCCcEEEEcCCC
Confidence            32               1111  1234445688999998755

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=96.17  E-value=0.029  Score=47.58  Aligned_cols=55  Identities=31%  Similarity=0.498  Sum_probs=40.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      .++|+|||.++.||..++.+|..++-  .|.+.+.+                       |.++++.++.||+||.++|.|
T Consensus        36 Gk~v~VvGrs~~VG~Pla~lL~~~~a--tVt~~h~~-----------------------T~~l~~~~~~ADIVVsa~G~~   90 (160)
T PF02882_consen   36 GKKVVVVGRSNIVGKPLAMLLLNKGA--TVTICHSK-----------------------TKNLQEITRRADIVVSAVGKP   90 (160)
T ss_dssp             T-EEEEE-TTTTTHHHHHHHHHHTT---EEEEE-TT-----------------------SSSHHHHHTTSSEEEE-SSST
T ss_pred             CCEEEEECCcCCCChHHHHHHHhCCC--eEEeccCC-----------------------CCcccceeeeccEEeeeeccc
Confidence            45999999988999999999998875  55555321                       235678899999999999866

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=96.17  E-value=0.047  Score=55.91  Aligned_cols=139  Identities=17%  Similarity=0.215  Sum_probs=82.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCH---H-hhhCCCCEEEEc
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQL---E-DALTGMDIVIIP  121 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~---~-eal~~aDiVIit  121 (289)
                      .++|.|+|. |.+|+.++..|...+.  +++++|.|+.+  +..+....  .++- +.+.++.   + ..+.+||.+|++
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~~--v~~~~~~g--~~v~-~GDat~~~~L~~agi~~A~~vvv~  471 (621)
T PRK03562        400 QPRVIIAGF-GRFGQIVGRLLLSSGV--KMTVLDHDPDH--IETLRKFG--MKVF-YGDATRMDLLESAGAAKAEVLINA  471 (621)
T ss_pred             cCcEEEEec-ChHHHHHHHHHHhCCC--CEEEEECCHHH--HHHHHhcC--CeEE-EEeCCCHHHHHhcCCCcCCEEEEE
Confidence            358999999 9999999999998887  89999998732  12222211  1221 1112222   1 235799999988


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHH
Q 022947          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANT  201 (289)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t~lds~R~~~  201 (289)
                      ...+           +.|    ..++..+++..|+..+++-++-..-.     +.+++. |  -+.++--+...+.++-+
T Consensus       472 ~~d~-----------~~n----~~i~~~ar~~~p~~~iiaRa~d~~~~-----~~L~~~-G--ad~v~~e~~e~sl~l~~  528 (621)
T PRK03562        472 IDDP-----------QTS----LQLVELVKEHFPHLQIIARARDVDHY-----IRLRQA-G--VEKPERETFEGALKSGR  528 (621)
T ss_pred             eCCH-----------HHH----HHHHHHHHHhCCCCeEEEEECCHHHH-----HHHHHC-C--CCEEehhhHhHHHHHHH
Confidence            4211           234    34555667778987766544332221     223332 3  34454445444556666


Q ss_pred             HHHHHcCCCCccee
Q 022947          202 FVAEVLGLDPREVD  215 (289)
Q Consensus       202 ~lA~~l~v~~~~V~  215 (289)
                      .+-+.+|+++++++
T Consensus       529 ~~L~~lg~~~~~~~  542 (621)
T PRK03562        529 LVLESLGLGPYEAR  542 (621)
T ss_pred             HHHHHcCCCHHHHH
Confidence            66677888876664

>PRK07201 short chain dehydrogenase; Provisional

Probab=96.16  E-value=0.058  Score=54.87  Aligned_cols=115  Identities=16%  Similarity=0.159  Sum_probs=65.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEE----ecCCCHHhhh------
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGF----LGQQQLEDAL------  112 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~----~~t~d~~eal------  112 (289)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++++++.  .....++....  .++..+    ....+.++++      
T Consensus       370 ~~k~vlItGas~giG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~  445 (657)
T PRK07201        370 VGKVVLITGASSGIGRATAIKVAEAGA--TVFLVARNGEALDELVAEIRAKG--GTAHAYTCDLTDSAAVDHTVKDILAE  445 (657)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHh
Confidence            346899999999999999999999997  8999998762  11222222211  122211    1111222233      


Q ss_pred             -CCCCEEEEcCCCCCCCC----C----chhhHHHhhHHHHH----HHHHHHHHhCCCcEEEEecC
Q 022947          113 -TGMDIVIIPAGVPRKPG----M----TRDDLFNINAGIVK----TLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       113 -~~aDiVIitag~~~~~g----~----~r~d~~~~N~~i~~----~i~~~i~~~~p~aiviv~tN  164 (289)
                       ...|++|.+||......    .    +-...+..|+....    .+.+.+++. ..+.|+++|.
T Consensus       446 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~isS  509 (657)
T PRK07201        446 HGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRER-RFGHVVNVSS  509 (657)
T ss_pred             cCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCCEEEEECC
Confidence             36899999998642211    0    11234556655444    444444433 3455666553

>PRK05599 hypothetical protein; Provisional

Probab=96.15  E-value=0.31  Score=43.26  Aligned_cols=116  Identities=11%  Similarity=0.202  Sum_probs=63.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCceEEEE----ecCCCH-------HhhhC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGF----LGQQQL-------EDALT  113 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~----~~t~d~-------~eal~  113 (289)
                      |.+.|+||++.+|..++..|+ +|.  .|++.++++  .+....++..... ..+..+    ....+.       .+.+.
T Consensus         1 ~~vlItGas~GIG~aia~~l~-~g~--~Vil~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   76 (246)
T PRK05599          1 MSILILGGTSDIAGEIATLLC-HGE--DVVLAARRPEAAQGLASDLRQRGA-TSVHVLSFDAQDLDTHRELVKQTQELAG   76 (246)
T ss_pred             CeEEEEeCccHHHHHHHHHHh-CCC--EEEEEeCCHHHHHHHHHHHHhccC-CceEEEEcccCCHHHHHHHHHHHHHhcC
Confidence            468899999999999999888 465  899999876  2222333432211 111111    111111       12235


Q ss_pred             CCCEEEEcCCCCCCCC---Cch---hhHHHhhH----HHHHHHHHHHHHhCCCcEEEEecCCC
Q 022947          114 GMDIVIIPAGVPRKPG---MTR---DDLFNINA----GIVKTLCEGIAKCCPKAIVNLISNPV  166 (289)
Q Consensus       114 ~aDiVIitag~~~~~g---~~r---~d~~~~N~----~i~~~i~~~i~~~~p~aiviv~tNPv  166 (289)
                      ..|++|+++|......   .+.   .+....|.    ...+.+.+.+.+...++.|+++|.-.
T Consensus        77 ~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~  139 (246)
T PRK05599         77 EISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIA  139 (246)
T ss_pred             CCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence            7899999998743211   111   12233333    33345556665544457777776544

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=96.12  E-value=0.046  Score=53.20  Aligned_cols=90  Identities=22%  Similarity=0.169  Sum_probs=60.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch-hHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~-g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      ...+|+|+|+ |.+|..++..+...|.  +|+.+|+++.+ ..+.++.     ..+      .+.+++++++|+||.+.|
T Consensus       201 ~GktVvViG~-G~IG~~va~~ak~~Ga--~ViV~d~d~~R~~~A~~~G-----~~~------~~~~e~v~~aDVVI~atG  266 (413)
T cd00401         201 AGKVAVVAGY-GDVGKGCAQSLRGQGA--RVIVTEVDPICALQAAMEG-----YEV------MTMEEAVKEGDIFVTTTG  266 (413)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEECChhhHHHHHhcC-----CEE------ccHHHHHcCCCEEEECCC
Confidence            4569999999 9999999999988886  78889998732 2222211     111      123577899999999865


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCC
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNP  165 (289)
                      .+               ..+..  ..+....|.+++++++.+
T Consensus       267 ~~---------------~~i~~--~~l~~mk~GgilvnvG~~  291 (413)
T cd00401         267 NK---------------DIITG--EHFEQMKDGAIVCNIGHF  291 (413)
T ss_pred             CH---------------HHHHH--HHHhcCCCCcEEEEeCCC
Confidence            32               11221  113334578999999875

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=96.11  E-value=0.053  Score=49.44  Aligned_cols=75  Identities=20%  Similarity=0.224  Sum_probs=43.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIi  120 (289)
                      +++||+|.|++|.+|+.+...+.+.+...=+..+|.......-.|.........+... .++|+.....++|++|=
T Consensus         1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~-v~~~~~~~~~~~DV~ID   75 (266)
T COG0289           1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVP-VTDDLLLVKADADVLID   75 (266)
T ss_pred             CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCce-eecchhhcccCCCEEEE
Confidence            3689999999999999999988887744344556665421111122221111111111 12344566788888775

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=96.11  E-value=0.023  Score=53.51  Aligned_cols=71  Identities=15%  Similarity=0.180  Sum_probs=49.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      ..+++|||+ |..|...+..+.......+|.++|++..  +..+.++.+.  ...+..   ..+.++++++||+|+.+.
T Consensus       128 ~~~lgiiG~-G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~--g~~v~~---~~~~~eav~~aDiVitaT  200 (325)
T TIGR02371       128 SSVLGIIGA-GRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDY--EVPVRA---ATDPREAVEGCDILVTTT  200 (325)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhh--CCcEEE---eCCHHHHhccCCEEEEec
Confidence            468999998 9999987766655445689999999872  2333334321  122332   246789999999999874

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK08862 short chain dehydrogenase; Provisional

Probab=96.10  E-value=0.37  Score=42.56  Aligned_cols=115  Identities=13%  Similarity=0.136  Sum_probs=64.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEE----ecCCCHH-------hhh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGF----LGQQQLE-------DAL  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~----~~t~d~~-------eal  112 (289)
                      .+.+.|+|+++-+|..++..|++.|.  +|+++++++.  +....++....  ..+..+    ....+++       +.+
T Consensus         5 ~k~~lVtGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (227)
T PRK08862          5 SSIILITSAGSVLGRTISCHFARLGA--TLILCDQDQSALKDTYEQCSALT--DNVYSFQLKDFSQESIRHLFDAIEQQF   80 (227)
T ss_pred             CeEEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CCeEEEEccCCCHHHHHHHHHHHHHHh
Confidence            35899999999999999999999997  8999988762  11222222211  111111    0111121       122


Q ss_pred             C-CCCEEEEcCCCCCCC----CCchhh---HHHhhH----HHHHHHHHHHHHhCCCcEEEEecC
Q 022947          113 T-GMDIVIIPAGVPRKP----GMTRDD---LFNINA----GIVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       113 ~-~aDiVIitag~~~~~----g~~r~d---~~~~N~----~i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      . ..|++|.++|....+    ..+..+   .+..|.    ...+...+.+.+....+.|+++|.
T Consensus        81 g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS  144 (227)
T PRK08862         81 NRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVIS  144 (227)
T ss_pred             CCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEec
Confidence            3 689999999743221    112111   223343    334455566655444567777764

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.09  E-value=0.39  Score=43.05  Aligned_cols=156  Identities=13%  Similarity=0.130  Sum_probs=78.7

Q ss_pred             CCEEEEEcCCC--ccHHHHHHHHHhCCCccEEEEEeCCC-chhHHhhhhcc-cCCceEE-EEecCCCH-------HhhhC
Q 022947           46 GFKVAVLGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHM-DTNAVVR-GFLGQQQL-------EDALT  113 (289)
Q Consensus        46 ~~KI~IIGaaG--~VGs~la~~L~~~g~~~eI~LvD~~~-~~g~~~DL~~~-~~~~~v~-~~~~t~d~-------~eal~  113 (289)
                      .+.+.|+||++  -+|..++..|+..|.  .|++.++++ ......++... .....+. ..+...+.       .+.+.
T Consensus         8 ~k~~lITGas~~~GIG~a~a~~la~~G~--~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~g   85 (260)
T PRK06603          8 GKKGLITGIANNMSISWAIAQLAKKHGA--ELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKWG   85 (260)
T ss_pred             CcEEEEECCCCCcchHHHHHHHHHHcCC--EEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHcC
Confidence            45788999965  599999999999997  888888764 11222333221 1000011 01111111       12245


Q ss_pred             CCCEEEEcCCCCCC-----C--CCch---hhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCCCcccHHHHHHHHHHhCC
Q 022947          114 GMDIVIIPAGVPRK-----P--GMTR---DDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (289)
Q Consensus       114 ~aDiVIitag~~~~-----~--g~~r---~d~~~~N~~i~~~i~~~i~~~-~p~aiviv~tNPvd~~t~~~~~~~~~~~~  182 (289)
                      ..|++|..+|....     +  ..+.   ...+..|+.....+.+.+... ...+.|++++......            +
T Consensus        86 ~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~------------~  153 (260)
T PRK06603         86 SFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAEK------------V  153 (260)
T ss_pred             CccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCcccc------------C
Confidence            68999999886421     1  1111   223455554444444333222 1346777776533211            1


Q ss_pred             CCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeee
Q 022947          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVP  217 (289)
Q Consensus       183 ~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~  217 (289)
                      .|..-.++.+..--..|-+.+|.+++  +..|++.
T Consensus       154 ~~~~~~Y~asKaal~~l~~~la~el~--~~gIrVn  186 (260)
T PRK06603        154 IPNYNVMGVAKAALEASVKYLANDMG--ENNIRVN  186 (260)
T ss_pred             CCcccchhhHHHHHHHHHHHHHHHhh--hcCeEEE
Confidence            22223344443333445667777764  3445544

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=96.07  E-value=0.027  Score=53.11  Aligned_cols=92  Identities=32%  Similarity=0.399  Sum_probs=58.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      .++|+|||. |.+|+.++..+..-|.  +|..||.........  .+     ...   ...++++-++.||+|++..  |
T Consensus       142 gkTvGIiG~-G~IG~~va~~l~afgm--~v~~~d~~~~~~~~~--~~-----~~~---~~~~Ld~lL~~sDiv~lh~--P  206 (324)
T COG0111         142 GKTVGIIGL-GRIGRAVAKRLKAFGM--KVIGYDPYSPRERAG--VD-----GVV---GVDSLDELLAEADILTLHL--P  206 (324)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEECCCCchhhhc--cc-----cce---ecccHHHHHhhCCEEEEcC--C
Confidence            569999998 9999999999999998  999999843211111  01     011   1235788899999999974  2


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      ..+ ++|.   .-|.       +.+++..|.+++||++
T Consensus       207 lT~-eT~g---~i~~-------~~~a~MK~gailIN~a  233 (324)
T COG0111         207 LTP-ETRG---LINA-------EELAKMKPGAILINAA  233 (324)
T ss_pred             CCc-chhc---ccCH-------HHHhhCCCCeEEEECC
Confidence            221 1221   0121       2233444788888875

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=96.05  E-value=0.047  Score=53.60  Aligned_cols=128  Identities=16%  Similarity=0.219  Sum_probs=73.3

Q ss_pred             CCCCCCEEEEEcCCCccHHH-HHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEE
Q 022947           42 GGSPGFKVAVLGAAGGIGQP-LAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (289)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~-la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIi  120 (289)
                      ...+.+||.|+|. |..|.+ +|..|...|.  +|...|.+... ...+|...    .+..+.+ .+ .+.+.++|+||.
T Consensus         3 ~~~~~~~v~viG~-G~sG~s~~a~~L~~~G~--~V~~~D~~~~~-~~~~l~~~----gi~~~~~-~~-~~~~~~~d~vv~   72 (461)
T PRK00421          3 ELRRIKRIHFVGI-GGIGMSGLAEVLLNLGY--KVSGSDLKESA-VTQRLLEL----GAIIFIG-HD-AENIKDADVVVY   72 (461)
T ss_pred             CcCCCCEEEEEEE-chhhHHHHHHHHHhCCC--eEEEECCCCCh-HHHHHHHC----CCEEeCC-CC-HHHCCCCCEEEE
Confidence            3445678999999 999999 7989999998  99999987632 12233322    1222212 12 356889999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHH--HHHHHHHhCCCcEEEEecCCCc--ccHHHHHHHHHHhCCCC
Q 022947          121 PAGVPRKPGMTRDDLFNINAGIVKT--LCEGIAKCCPKAIVNLISNPVN--STVPIAAEVFKKVGTYD  184 (289)
Q Consensus       121 tag~~~~~g~~r~d~~~~N~~i~~~--i~~~i~~~~p~aiviv~tNPvd--~~t~~~~~~~~~~~~~~  184 (289)
                      +.|+|...- ........+++++-+  ++..+   .++..+|-+|=...  +.|.++.++++.. |++
T Consensus        73 spgi~~~~~-~~~~a~~~~i~i~~~~e~~~~~---~~~~~~I~ITGTnGKTTTt~ll~~iL~~~-g~~  135 (461)
T PRK00421         73 SSAIPDDNP-ELVAARELGIPVVRRAEMLAEL---MRFRTSIAVAGTHGKTTTTSLLAHVLAEA-GLD  135 (461)
T ss_pred             CCCCCCCCH-HHHHHHHCCCcEEeHHHHHHHH---HccCcEEEEECCCCHHHHHHHHHHHHHhc-CCC
Confidence            999875321 111122334444322  22222   21223444544433  5666666666543 443

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=96.05  E-value=0.025  Score=55.10  Aligned_cols=140  Identities=19%  Similarity=0.234  Sum_probs=77.2

Q ss_pred             hhhHHHHHhhcCCCcccc-cccccc-ccccc--cccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch
Q 022947            9 NQRIARIAAHLHPPTLQI-EGESSG-LGRMD--CRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP   84 (289)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~--~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~   84 (289)
                      -|+.-+.+..++..| .| .+..|. +.-..  ....+.....+|+|+|+ |.+|..++..|...|. .+|+++|++...
T Consensus       140 f~~a~~~~k~vr~~t-~i~~~~vSv~~~Av~la~~~~~~l~~~~VlViGa-G~iG~~~a~~L~~~G~-~~V~v~~rs~~r  216 (417)
T TIGR01035       140 FQKAFSVGKRVRTET-DISAGAVSISSAAVELAERIFGSLKGKKALLIGA-GEMGELVAKHLLRKGV-GKILIANRTYER  216 (417)
T ss_pred             HHHHHHHhhhhhhhc-CCCCCCcCHHHHHHHHHHHHhCCccCCEEEEECC-hHHHHHHHHHHHHCCC-CEEEEEeCCHHH
Confidence            345555666666655 44 333332 11110  11112234569999998 9999999998888773 489999987522


Q ss_pred             hHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 022947           85 GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus        85 g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      .  .++.... ...  .+. ..++.+++.++|+||.+.+.+..-         -+.+.++..   +..-....+++=+++
T Consensus       217 a--~~la~~~-g~~--~i~-~~~l~~~l~~aDvVi~aT~s~~~i---------i~~e~l~~~---~~~~~~~~~viDla~  278 (417)
T TIGR01035       217 A--EDLAKEL-GGE--AVK-FEDLEEYLAEADIVISSTGAPHPI---------VSKEDVERA---LRERTRPLFIIDIAV  278 (417)
T ss_pred             H--HHHHHHc-CCe--Eee-HHHHHHHHhhCCEEEECCCCCCce---------EcHHHHHHH---HhcCCCCeEEEEeCC
Confidence            1  1122111 011  111 135668899999999987654211         011222211   111113458888899


Q ss_pred             CCccc
Q 022947          165 PVNST  169 (289)
Q Consensus       165 Pvd~~  169 (289)
                      |-|+=
T Consensus       279 Prdid  283 (417)
T TIGR01035       279 PRDVD  283 (417)
T ss_pred             CCCCC
Confidence            98774

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>TIGR00518 alaDH alanine dehydrogenase

Probab=96.03  E-value=0.027  Score=53.97  Aligned_cols=83  Identities=16%  Similarity=0.169  Sum_probs=54.1

Q ss_pred             ccccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEE-EecCCCHHhhhCCC
Q 022947           37 DCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGM  115 (289)
Q Consensus        37 ~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~eal~~a  115 (289)
                      ..+..++..+.||.|+|+ |.+|...+..+...|.  +|..+|++.....  .+.... ...+.. .....++.+.++++
T Consensus       158 ~~~~~~~l~~~~VlViGa-G~vG~~aa~~a~~lGa--~V~v~d~~~~~~~--~l~~~~-g~~v~~~~~~~~~l~~~l~~a  231 (370)
T TIGR00518       158 LLGGVPGVEPGDVTIIGG-GVVGTNAAKMANGLGA--TVTILDINIDRLR--QLDAEF-GGRIHTRYSNAYEIEDAVKRA  231 (370)
T ss_pred             eecCCCCCCCceEEEEcC-CHHHHHHHHHHHHCCC--eEEEEECCHHHHH--HHHHhc-CceeEeccCCHHHHHHHHccC
Confidence            344444556778999998 9999999999988886  7999998752211  111110 011111 11123466788999


Q ss_pred             CEEEEcCCCC
Q 022947          116 DIVIIPAGVP  125 (289)
Q Consensus       116 DiVIitag~~  125 (289)
                      |+||.+++.+
T Consensus       232 DvVI~a~~~~  241 (370)
T TIGR00518       232 DLLIGAVLIP  241 (370)
T ss_pred             CEEEEccccC
Confidence            9999998654

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=96.03  E-value=0.019  Score=54.40  Aligned_cols=33  Identities=30%  Similarity=0.401  Sum_probs=26.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEE-EEEe
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVL-HLYD   79 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI-~LvD   79 (289)
                      ++||+|+||+|.+|..++..|...+.. ++ .+.|
T Consensus         2 m~kVaIiGAtG~vG~~l~~~L~~~p~~-elv~v~~   35 (343)
T PRK00436          2 MIKVGIVGASGYTGGELLRLLLNHPEV-EIVAVTS   35 (343)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEEC
Confidence            579999999999999999888876544 55 5565

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=96.02  E-value=0.032  Score=53.72  Aligned_cols=61  Identities=16%  Similarity=0.240  Sum_probs=45.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      ..++|+|||. |.||+.++..+..-|.  +|..+|.....   .  ..     ...    ..++++.++.||+|++..
T Consensus       115 ~gktvGIIG~-G~IG~~vA~~l~a~G~--~V~~~dp~~~~---~--~~-----~~~----~~~L~ell~~sDiI~lh~  175 (378)
T PRK15438        115 HDRTVGIVGV-GNVGRRLQARLEALGI--KTLLCDPPRAD---R--GD-----EGD----FRSLDELVQEADILTFHT  175 (378)
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCcccc---c--cc-----ccc----cCCHHHHHhhCCEEEEeC
Confidence            4569999998 9999999999988887  99999863211   0  00     001    125778889999999875

>PLN02494 adenosylhomocysteinase

Probab=96.01  E-value=0.043  Score=54.13  Aligned_cols=91  Identities=23%  Similarity=0.198  Sum_probs=61.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch-hHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~-g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      .++|+|+|. |.+|..++..+...|.  +|+.+|+++.+ ..+.+  +..   .+      .+++++++.+|+||.+.|.
T Consensus       254 GKtVvViGy-G~IGr~vA~~aka~Ga--~VIV~e~dp~r~~eA~~--~G~---~v------v~leEal~~ADVVI~tTGt  319 (477)
T PLN02494        254 GKVAVICGY-GDVGKGCAAAMKAAGA--RVIVTEIDPICALQALM--EGY---QV------LTLEDVVSEADIFVTTTGN  319 (477)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhhHHHHh--cCC---ee------ccHHHHHhhCCEEEECCCC
Confidence            569999998 9999999999988887  89999987622 22221  111   11      1356789999999987653


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd  167 (289)
                      .               .++.  .+.+....|.+++++++-+-+
T Consensus       320 ~---------------~vI~--~e~L~~MK~GAiLiNvGr~~~  345 (477)
T PLN02494        320 K---------------DIIM--VDHMRKMKNNAIVCNIGHFDN  345 (477)
T ss_pred             c---------------cchH--HHHHhcCCCCCEEEEcCCCCC
Confidence            2               1110  233444558999999988643

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=96.01  E-value=0.065  Score=52.35  Aligned_cols=91  Identities=21%  Similarity=0.158  Sum_probs=60.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchh-HHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g-~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      ..++|+|+|. |.+|..++..+...|.  +|+.+|+++.+. .+..  + .  ..+      .+++++++++|+||.+.|
T Consensus       211 ~Gk~VlViG~-G~IG~~vA~~lr~~Ga--~ViV~d~dp~ra~~A~~--~-G--~~v------~~l~eal~~aDVVI~aTG  276 (425)
T PRK05476        211 AGKVVVVAGY-GDVGKGCAQRLRGLGA--RVIVTEVDPICALQAAM--D-G--FRV------MTMEEAAELGDIFVTATG  276 (425)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCCchhhHHHHh--c-C--CEe------cCHHHHHhCCCEEEECCC
Confidence            4569999998 9999999999988887  899999987321 1111  1 1  111      135688999999998764


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV  166 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPv  166 (289)
                      .+               .++.  .+.+....+.+++++++-+-
T Consensus       277 ~~---------------~vI~--~~~~~~mK~GailiNvG~~d  302 (425)
T PRK05476        277 NK---------------DVIT--AEHMEAMKDGAILANIGHFD  302 (425)
T ss_pred             CH---------------HHHH--HHHHhcCCCCCEEEEcCCCC
Confidence            21               1222  12233345788999887554

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.00  E-value=0.037  Score=53.82  Aligned_cols=71  Identities=20%  Similarity=0.198  Sum_probs=44.8

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEE-EecCCCHHhh-hCCCCEEEEcC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDA-LTGMDIVIIPA  122 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~ea-l~~aDiVIita  122 (289)
                      |||.|+|+ |.+|..++..|...|.  +++++|.++...  ..+.......-+.+ ......++++ +.++|.||++.
T Consensus         1 m~viIiG~-G~ig~~~a~~L~~~g~--~v~vid~~~~~~--~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~   73 (453)
T PRK09496          1 MKIIIVGA-GQVGYTLAENLSGENN--DVTVIDTDEERL--RRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVT   73 (453)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--cEEEEECCHHHH--HHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEec
Confidence            58999998 9999999999988887  899999876221  11111000001111 0011124444 78999999985

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.00  E-value=0.051  Score=48.42  Aligned_cols=35  Identities=34%  Similarity=0.469  Sum_probs=31.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      ..||.|+|+ |.+|+.++..|+..|. .++.++|.+.
T Consensus        21 ~~~VlivG~-GglGs~va~~La~~Gv-g~i~lvD~D~   55 (228)
T cd00757          21 NARVLVVGA-GGLGSPAAEYLAAAGV-GKLGLVDDDV   55 (228)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence            458999998 9999999999999995 6999999875

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.99  E-value=0.34  Score=43.47  Aligned_cols=34  Identities=18%  Similarity=0.050  Sum_probs=29.1

Q ss_pred             CEEEEEcCC--CccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           47 FKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        47 ~KI~IIGaa--G~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      +.+.|+||+  +-+|..++..|++.|.  +|++.+++.
T Consensus         8 k~~lItGa~~s~GIG~aia~~la~~G~--~v~~~~r~~   43 (257)
T PRK08594          8 KTYVVMGVANKRSIAWGIARSLHNAGA--KLVFTYAGE   43 (257)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHCCC--EEEEecCcc
Confidence            478999985  6899999999999997  889887653

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=95.99  E-value=0.15  Score=48.25  Aligned_cols=127  Identities=20%  Similarity=0.222  Sum_probs=73.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcccCCceEEEEecCCCHHhhhCC-CCEEEEcC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALTG-MDIVIIPA  122 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~-aDiVIita  122 (289)
                      +..+|+|+|+ |-+|....+.++..+.  +|+.+|+++. ...+.+|.-.   .-+. .. ..|..+++++ +|+|+.|+
T Consensus       166 pG~~V~I~G~-GGlGh~avQ~Aka~ga--~Via~~~~~~K~e~a~~lGAd---~~i~-~~-~~~~~~~~~~~~d~ii~tv  237 (339)
T COG1064         166 PGKWVAVVGA-GGLGHMAVQYAKAMGA--EVIAITRSEEKLELAKKLGAD---HVIN-SS-DSDALEAVKEIADAIIDTV  237 (339)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHcCC--eEEEEeCChHHHHHHHHhCCc---EEEE-cC-CchhhHHhHhhCcEEEECC
Confidence            3569999999 9888777777776774  9999999873 2334444211   1111 11 1233344443 99999997


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC-cccHHH-HHHHHHHhCCCCCCcEEEe---eeccHH
Q 022947          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV-NSTVPI-AAEVFKKVGTYDPKRLLGV---TMLDVV  197 (289)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPv-d~~t~~-~~~~~~~~~~~~~~kviG~---t~lds~  197 (289)
                      + +               .-+...   ++-..+.+.++.+.+|- ..+..+ +..+     -+...+|.|.   +.-|+.
T Consensus       238 ~-~---------------~~~~~~---l~~l~~~G~~v~vG~~~~~~~~~~~~~~l-----i~~~~~i~GS~~g~~~d~~  293 (339)
T COG1064         238 G-P---------------ATLEPS---LKALRRGGTLVLVGLPGGGPIPLLPAFLL-----ILKEISIVGSLVGTRADLE  293 (339)
T ss_pred             C-h---------------hhHHHH---HHHHhcCCEEEEECCCCCcccCCCCHHHh-----hhcCeEEEEEecCCHHHHH
Confidence            6 3               112223   33345789999999994 432211 1111     1345688888   455555


Q ss_pred             HHHHHH
Q 022947          198 RANTFV  203 (289)
Q Consensus       198 R~~~~l  203 (289)
                      .+..+.
T Consensus       294 e~l~f~  299 (339)
T COG1064         294 EALDFA  299 (339)
T ss_pred             HHHHHH
Confidence            444444

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=95.99  E-value=0.038  Score=52.04  Aligned_cols=93  Identities=18%  Similarity=0.147  Sum_probs=57.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHH-hCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~-~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      ..++|+|||. |.+|..++..+. --|.  +|+.+|.........++       .+. +   .++++.++.||+|+++..
T Consensus       144 ~gktvGIiG~-G~IG~~va~~l~~~fgm--~V~~~~~~~~~~~~~~~-------~~~-~---~~l~ell~~sDvv~lh~p  209 (323)
T PRK15409        144 HHKTLGIVGM-GRIGMALAQRAHFGFNM--PILYNARRHHKEAEERF-------NAR-Y---CDLDTLLQESDFVCIILP  209 (323)
T ss_pred             CCCEEEEEcc-cHHHHHHHHHHHhcCCC--EEEEECCCCchhhHHhc-------CcE-e---cCHHHHHHhCCEEEEeCC
Confidence            3569999998 999999998886 5566  88888865321111111       111 1   257788999999999853


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      ..  + +        +-.++.  .+.++...|.+++||++-
T Consensus       210 lt--~-~--------T~~li~--~~~l~~mk~ga~lIN~aR  237 (323)
T PRK15409        210 LT--D-E--------THHLFG--AEQFAKMKSSAIFINAGR  237 (323)
T ss_pred             CC--h-H--------HhhccC--HHHHhcCCCCeEEEECCC
Confidence            21  1 1        111111  123444568999999863

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=95.98  E-value=0.069  Score=46.85  Aligned_cols=70  Identities=11%  Similarity=0.079  Sum_probs=45.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      .+||.|||+ |.||...+..|...|.  +|++++.... ....++.+..   .+......-+ ++.+.++|+||.+.+
T Consensus        10 ~k~vLVIGg-G~va~~ka~~Ll~~ga--~V~VIs~~~~-~~l~~l~~~~---~i~~~~~~~~-~~~l~~adlViaaT~   79 (202)
T PRK06718         10 NKRVVIVGG-GKVAGRRAITLLKYGA--HIVVISPELT-ENLVKLVEEG---KIRWKQKEFE-PSDIVDAFLVIAATN   79 (202)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEcCCCC-HHHHHHHhCC---CEEEEecCCC-hhhcCCceEEEEcCC
Confidence            459999999 9999999999988885  8999975432 1222333221   1222111112 356899999888743

>TIGR00936 ahcY adenosylhomocysteinase

Probab=95.98  E-value=0.063  Score=52.14  Aligned_cols=90  Identities=24%  Similarity=0.184  Sum_probs=58.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchh-HHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g-~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      ...+|+|+|. |.+|..++..+...|.  +|+.+|+++.+. .+.  .+.   ..+      .+.+++++++|+||.+.|
T Consensus       194 ~Gk~VvViG~-G~IG~~vA~~ak~~Ga--~ViV~d~dp~r~~~A~--~~G---~~v------~~leeal~~aDVVItaTG  259 (406)
T TIGR00936       194 AGKTVVVAGY-GWCGKGIAMRARGMGA--RVIVTEVDPIRALEAA--MDG---FRV------MTMEEAAKIGDIFITATG  259 (406)
T ss_pred             CcCEEEEECC-CHHHHHHHHHHhhCcC--EEEEEeCChhhHHHHH--hcC---CEe------CCHHHHHhcCCEEEECCC
Confidence            4569999998 9999999999988886  899999887321 111  111   111      134578999999998754


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCC
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNP  165 (289)
                      .+               .++..  +.+....+.+++++++-.
T Consensus       260 ~~---------------~vI~~--~~~~~mK~GailiN~G~~  284 (406)
T TIGR00936       260 NK---------------DVIRG--EHFENMKDGAIVANIGHF  284 (406)
T ss_pred             CH---------------HHHHH--HHHhcCCCCcEEEEECCC
Confidence            21               22221  123334477888888764

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK08291 ectoine utilization protein EutC; Validated

Probab=95.97  E-value=0.033  Score=52.50  Aligned_cols=73  Identities=16%  Similarity=0.238  Sum_probs=48.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      .++|+|+|+ |..|...+..+....-+.+|.+++++..  +..+.++.+.. ...+..   .+|+++++++||+||.+..
T Consensus       132 ~~~v~IiGa-G~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~-g~~v~~---~~d~~~al~~aDiVi~aT~  206 (330)
T PRK08291        132 ASRAAVIGA-GEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL-GIPVTV---ARDVHEAVAGADIIVTTTP  206 (330)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc-CceEEE---eCCHHHHHccCCEEEEeeC
Confidence            468999998 9999988777765333579999998762  23333333211 122222   3477899999999988743

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=95.97  E-value=0.093  Score=46.16  Aligned_cols=70  Identities=19%  Similarity=0.140  Sum_probs=47.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      .+||.|||+ |.||..-+..|+..|-  +|++++.+.. ....++...   .++....+..+ .+.+.++|+||.+-+
T Consensus         9 gk~vlVvGg-G~va~rk~~~Ll~~ga--~VtVvsp~~~-~~l~~l~~~---~~i~~~~~~~~-~~dl~~~~lVi~at~   78 (205)
T TIGR01470         9 GRAVLVVGG-GDVALRKARLLLKAGA--QLRVIAEELE-SELTLLAEQ---GGITWLARCFD-ADILEGAFLVIAATD   78 (205)
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHCCC--EEEEEcCCCC-HHHHHHHHc---CCEEEEeCCCC-HHHhCCcEEEEECCC
Confidence            358999999 9999999999998886  8999987542 122233322   23433322223 367899999998744

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=95.96  E-value=0.032  Score=53.80  Aligned_cols=61  Identities=21%  Similarity=0.231  Sum_probs=45.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      .++|+|||. |.||+.++..+...|.  +|+.+|.....   .  ..     ... +   .++++.+++||+|++...
T Consensus       116 gktvGIIG~-G~IG~~va~~l~a~G~--~V~~~Dp~~~~---~--~~-----~~~-~---~~l~ell~~aDiV~lh~P  176 (381)
T PRK00257        116 ERTYGVVGA-GHVGGRLVRVLRGLGW--KVLVCDPPRQE---A--EG-----DGD-F---VSLERILEECDVISLHTP  176 (381)
T ss_pred             cCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCcccc---c--cc-----Ccc-c---cCHHHHHhhCCEEEEeCc
Confidence            468999998 9999999999988888  99999974321   0  00     011 1   257788899999999753

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.95  E-value=0.35  Score=43.95  Aligned_cols=35  Identities=20%  Similarity=0.090  Sum_probs=30.0

Q ss_pred             CCEEEEEcCC--CccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaa--G~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .+.+.|+||+  +-+|..++..|+..|.  .|++.|+++
T Consensus         5 ~k~~lItGas~~~GIG~aiA~~la~~G~--~Vil~~r~~   41 (274)
T PRK08415          5 GKKGLIVGVANNKSIAYGIAKACFEQGA--ELAFTYLNE   41 (274)
T ss_pred             CcEEEEECCCCCCCHHHHHHHHHHHCCC--EEEEEecCH
Confidence            3578999985  5799999999999997  899999874

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.95  E-value=0.53  Score=42.20  Aligned_cols=35  Identities=23%  Similarity=0.229  Sum_probs=28.8

Q ss_pred             CCEEEEEcC--CCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGA--AGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGa--aG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .+.+.|+||  ++-+|..++..|+..|.  .|++.++++
T Consensus         6 ~k~~lITGa~~~~GIG~a~a~~l~~~G~--~v~~~~~~~   42 (261)
T PRK08690          6 GKKILITGMISERSIAYGIAKACREQGA--ELAFTYVVD   42 (261)
T ss_pred             CcEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEcCcH
Confidence            457999996  46899999999999997  888877654

>PRK08618 ornithine cyclodeaminase; Validated

Probab=95.95  E-value=0.031  Score=52.55  Aligned_cols=73  Identities=12%  Similarity=0.179  Sum_probs=48.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      ..+++|||+ |..|...+..++...-+.+|.++|+++.  ...+.++.+.. ...+..+   ++++++++++|+||.+-.
T Consensus       127 ~~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~-~~~~~~~---~~~~~~~~~aDiVi~aT~  201 (325)
T PRK08618        127 AKTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKF-NTEIYVV---NSADEAIEEADIIVTVTN  201 (325)
T ss_pred             CcEEEEECC-cHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc-CCcEEEe---CCHHHHHhcCCEEEEccC
Confidence            458999998 9999877766554333579999999862  22233333211 1233322   467889999999998743

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=95.93  E-value=0.068  Score=50.39  Aligned_cols=93  Identities=28%  Similarity=0.328  Sum_probs=59.8

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      ...++++|+|. |.||+.+|..+.--|.  +|+-+|+.+. .+..+...      .+.   . ++++.++.||+|++.+.
T Consensus       144 l~gktvGIiG~-GrIG~avA~r~~~Fgm--~v~y~~~~~~-~~~~~~~~------~~y---~-~l~ell~~sDii~l~~P  209 (324)
T COG1052         144 LRGKTLGIIGL-GRIGQAVARRLKGFGM--KVLYYDRSPN-PEAEKELG------ARY---V-DLDELLAESDIISLHCP  209 (324)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHhcCCC--EEEEECCCCC-hHHHhhcC------cee---c-cHHHHHHhCCEEEEeCC
Confidence            34679999998 9999999998884455  9999998763 11111111      111   1 26788999999999753


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      ..  + ++|.   ..|       .+.+++..|.+++||++
T Consensus       210 lt--~-~T~h---Lin-------~~~l~~mk~ga~lVNta  236 (324)
T COG1052         210 LT--P-ETRH---LIN-------AEELAKMKPGAILVNTA  236 (324)
T ss_pred             CC--h-HHhh---hcC-------HHHHHhCCCCeEEEECC
Confidence            21  1 1221   112       23355566889998875

>PRK06436 glycerate dehydrogenase; Provisional

Probab=95.91  E-value=0.036  Score=51.78  Aligned_cols=95  Identities=20%  Similarity=0.247  Sum_probs=61.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      ..++|+|+|. |.+|+.+|..+...|.  +|+.+|+....       . .  .. ..   ..++++.++.||+|+++...
T Consensus       121 ~gktvgIiG~-G~IG~~vA~~l~afG~--~V~~~~r~~~~-------~-~--~~-~~---~~~l~ell~~aDiv~~~lp~  183 (303)
T PRK06436        121 YNKSLGILGY-GGIGRRVALLAKAFGM--NIYAYTRSYVN-------D-G--IS-SI---YMEPEDIMKKSDFVLISLPL  183 (303)
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcc-------c-C--cc-cc---cCCHHHHHhhCCEEEECCCC
Confidence            3569999998 9999999988877787  99999975311       0 0  00 00   12577889999999998532


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec--CCCccc
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVNST  169 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t--NPvd~~  169 (289)
                      .  + +++. ++  |       .+.+....|.+++|+++  .++|.-
T Consensus       184 t--~-~T~~-li--~-------~~~l~~mk~ga~lIN~sRG~~vd~~  217 (303)
T PRK06436        184 T--D-ETRG-MI--N-------SKMLSLFRKGLAIINVARADVVDKN  217 (303)
T ss_pred             C--c-hhhc-Cc--C-------HHHHhcCCCCeEEEECCCccccCHH
Confidence            1  1 1111 11  1       23344446889999985  556653

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.85  E-value=0.068  Score=52.04  Aligned_cols=123  Identities=24%  Similarity=0.310  Sum_probs=70.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhH---HhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV---TADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~---~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      .++|.|+|+ |.+|..+|..|+..|.  +|+++|.+.....   ..+|...    .+..+.+. ...+...++|+||.++
T Consensus         5 ~k~v~iiG~-g~~G~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~~l~~~----~~~~~~~~-~~~~~~~~~d~vv~~~   76 (450)
T PRK14106          5 GKKVLVVGA-GVSGLALAKFLKKLGA--KVILTDEKEEDQLKEALEELGEL----GIELVLGE-YPEEFLEGVDLVVVSP   76 (450)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhc----CCEEEeCC-cchhHhhcCCEEEECC
Confidence            458999998 8899999999999998  9999999752111   1222211    12222211 1224567899999998


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCc--ccHHHHHHHHHH
Q 022947          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN--STVPIAAEVFKK  179 (289)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd--~~t~~~~~~~~~  179 (289)
                      |.+.... .....-..+++++.......... + ..+|-+|=...  +.+.++..++..
T Consensus        77 g~~~~~~-~~~~a~~~~i~~~~~~~~~~~~~-~-~~vI~ITGS~GKTTt~~~l~~iL~~  132 (450)
T PRK14106         77 GVPLDSP-PVVQAHKKGIEVIGEVELAYRFS-K-APIVAITGTNGKTTTTTLLGEIFKN  132 (450)
T ss_pred             CCCCCCH-HHHHHHHCCCcEEeHHHHHHhhc-C-CCEEEEeCCCchHHHHHHHHHHHHH
Confidence            8753211 11111234555555444433322 2 34555555544  555566666654

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=95.84  E-value=0.14  Score=43.51  Aligned_cols=65  Identities=17%  Similarity=0.206  Sum_probs=41.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      .++|+|||. |.-|...|..|...|+  +|+.-.+........  ...+.+ .      ..++.|+.+.||+|+++.
T Consensus         4 ~k~IAViGy-GsQG~a~AlNLrDSG~--~V~Vglr~~s~s~~~--A~~~Gf-~------v~~~~eAv~~aDvV~~L~   68 (165)
T PF07991_consen    4 GKTIAVIGY-GSQGHAHALNLRDSGV--NVIVGLREGSASWEK--AKADGF-E------VMSVAEAVKKADVVMLLL   68 (165)
T ss_dssp             TSEEEEES--SHHHHHHHHHHHHCC---EEEEEE-TTCHHHHH--HHHTT--E------CCEHHHHHHC-SEEEE-S
T ss_pred             CCEEEEECC-ChHHHHHHHHHHhCCC--CEEEEecCCCcCHHH--HHHCCC-e------eccHHHHHhhCCEEEEeC
Confidence            469999999 9999999999999998  777666544322111  111111 1      124679999999999984

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=95.83  E-value=0.024  Score=50.49  Aligned_cols=74  Identities=16%  Similarity=0.175  Sum_probs=49.1

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      |+|.|+||+|++|+++...|+..++  +|+..-++......+.   .........+.....+..++++.|.++++.+..
T Consensus         1 ~~ilV~GatG~~G~~~~~~L~~~~~--~v~~~~r~~~~~~~~~---~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~~~   74 (275)
T COG0702           1 MKILVTGATGFVGGAVVRELLARGH--EVRAAVRNPEAAAALA---GGVEVVLGDLRDPKSLVAGAKGVDGVLLISGLL   74 (275)
T ss_pred             CeEEEEecccchHHHHHHHHHhCCC--EEEEEEeCHHHHHhhc---CCcEEEEeccCCHhHHHHHhccccEEEEEeccc
Confidence            5899999999999999999998887  7777766542222222   111111112223345678889999999986643

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.83  E-value=0.031  Score=47.70  Aligned_cols=55  Identities=31%  Similarity=0.524  Sum_probs=43.3

Q ss_pred             CCCEEEEEcCCCc-cHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           45 PGFKVAVLGAAGG-IGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        45 ~~~KI~IIGaaG~-VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      ...||.|+|+ |. +|..++..|...|.  +|.+++++.                       .++.+.+++||+||.+.+
T Consensus        43 ~gk~vlViG~-G~~~G~~~a~~L~~~g~--~V~v~~r~~-----------------------~~l~~~l~~aDiVIsat~   96 (168)
T cd01080          43 AGKKVVVVGR-SNIVGKPLAALLLNRNA--TVTVCHSKT-----------------------KNLKEHTKQADIVIVAVG   96 (168)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHhhCCC--EEEEEECCc-----------------------hhHHHHHhhCCEEEEcCC
Confidence            4569999999 86 58889999988886  788887531                       245678999999999987


Q ss_pred             CC
Q 022947          124 VP  125 (289)
Q Consensus       124 ~~  125 (289)
                      .|
T Consensus        97 ~~   98 (168)
T cd01080          97 KP   98 (168)
T ss_pred             CC
Confidence            65

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=95.83  E-value=0.077  Score=46.35  Aligned_cols=35  Identities=23%  Similarity=0.394  Sum_probs=31.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      ..||+|+|+ |.+|+.++..|+..|. .++.++|.+.
T Consensus        19 ~s~VlviG~-gglGsevak~L~~~GV-g~i~lvD~d~   53 (198)
T cd01485          19 SAKVLIIGA-GALGAEIAKNLVLAGI-DSITIVDHRL   53 (198)
T ss_pred             hCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence            468999999 8899999999999996 6899999874

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=95.83  E-value=0.028  Score=52.59  Aligned_cols=69  Identities=19%  Similarity=0.294  Sum_probs=44.8

Q ss_pred             CEEEEEcCCCccHHHHHHHHHh-CCCccEEEEEeCCC--chhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~-~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      .+++|+|+ |..+...+..+.. .+ +.+|.++|++.  .+..+.++.+ . ...+...   ++.++++++||+|+.+-
T Consensus       129 ~~l~viGa-G~QA~~~~~a~~~~~~-i~~v~v~~r~~~~~~~~~~~~~~-~-~~~v~~~---~~~~~av~~aDii~taT  200 (313)
T PF02423_consen  129 RTLGVIGA-GVQARWHLRALAAVRP-IKEVRVYSRSPERAEAFAARLRD-L-GVPVVAV---DSAEEAVRGADIIVTAT  200 (313)
T ss_dssp             -EEEEE---SHHHHHHHHHHHHHS---SEEEEE-SSHHHHHHHHHHHHC-C-CTCEEEE---SSHHHHHTTSSEEEE--
T ss_pred             ceEEEECC-CHHHHHHHHHHHHhCC-ceEEEEEccChhHHHHHHHhhcc-c-cccceec---cchhhhcccCCEEEEcc
Confidence            48999998 9999888776654 55 78999999987  3444555555 2 3344432   46889999999998763

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=95.81  E-value=0.069  Score=48.15  Aligned_cols=35  Identities=23%  Similarity=0.402  Sum_probs=31.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      ..||.|+|+ |-+|+.++..|+..|. .++.++|.+.
T Consensus        24 ~~~VlvvG~-GglGs~va~~La~~Gv-g~i~lvD~D~   58 (240)
T TIGR02355        24 ASRVLIVGL-GGLGCAASQYLAAAGV-GNLTLLDFDT   58 (240)
T ss_pred             CCcEEEECc-CHHHHHHHHHHHHcCC-CEEEEEeCCc
Confidence            458999998 9999999999999985 6999999876

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.81  E-value=0.43  Score=42.69  Aligned_cols=34  Identities=18%  Similarity=0.040  Sum_probs=29.3

Q ss_pred             CEEEEEcCC--CccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           47 FKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        47 ~KI~IIGaa--G~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      +.+.|+||+  +-+|..++..|+..|.  .|++.|+++
T Consensus        11 k~~lItGas~g~GIG~a~a~~la~~G~--~v~l~~r~~   46 (258)
T PRK07533         11 KRGLVVGIANEQSIAWGCARAFRALGA--ELAVTYLND   46 (258)
T ss_pred             CEEEEECCCCCCcHHHHHHHHHHHcCC--EEEEEeCCh
Confidence            478899986  3799999999999997  899999875

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=95.80  E-value=0.039  Score=51.43  Aligned_cols=73  Identities=14%  Similarity=0.047  Sum_probs=51.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      ...+++|||+ |..|...+..+..-..+++|.++|++.  ....+.++.+.. ...+...   ++.++++++||+|+.+-
T Consensus       116 da~~l~iiGa-G~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~-~~~v~~~---~~~~eav~~aDIV~taT  190 (301)
T PRK06407        116 NVENFTIIGS-GFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF-GVDIRPV---DNAEAALRDADTITSIT  190 (301)
T ss_pred             CCcEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc-CCcEEEe---CCHHHHHhcCCEEEEec
Confidence            3568999998 999998877666544578999999987  333344444321 2234432   46789999999999763

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.76  E-value=0.083  Score=52.00  Aligned_cols=124  Identities=15%  Similarity=0.088  Sum_probs=68.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-h-hH-HhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-P-GV-TADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~-g~-~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      .+||.|+|+ |.+|..+|..|...|.  +|.++|..+. . .. ...|...    .+..+.+. +. +...++|+||++.
T Consensus        16 ~~~v~viG~-G~~G~~~A~~L~~~G~--~V~~~d~~~~~~~~~~~~~l~~~----gv~~~~~~-~~-~~~~~~D~Vv~s~   86 (480)
T PRK01438         16 GLRVVVAGL-GVSGFAAADALLELGA--RVTVVDDGDDERHRALAAILEAL----GATVRLGP-GP-TLPEDTDLVVTSP   86 (480)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhhhHHHHHHHHHc----CCEEEECC-Cc-cccCCCCEEEECC
Confidence            348999998 9999999999999997  8999997651 1 11 1123222    22222222 11 2356799999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHH--HHHHHHHhCCCcEEEEecCCCc--ccHHHHHHHHHH
Q 022947          123 GVPRKPGMTRDDLFNINAGIVKT--LCEGIAKCCPKAIVNLISNPVN--STVPIAAEVFKK  179 (289)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~--i~~~i~~~~p~aiviv~tNPvd--~~t~~~~~~~~~  179 (289)
                      |++..... .......+++++.+  ++..+.+...+..+|-+|=...  +.+.+++.+++.
T Consensus        87 Gi~~~~~~-~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~  146 (480)
T PRK01438         87 GWRPDAPL-LAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRA  146 (480)
T ss_pred             CcCCCCHH-HHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence            98643211 11112334444432  2222221112334555655555  566677666654

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=95.75  E-value=0.034  Score=52.81  Aligned_cols=74  Identities=23%  Similarity=0.308  Sum_probs=44.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-chhHHhh-hh-c-----ccC-CceEEEEecCCCHHhhhCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTAD-IS-H-----MDT-NAVVRGFLGQQQLEDALTGM  115 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~~g~~~D-L~-~-----~~~-~~~v~~~~~t~d~~eal~~a  115 (289)
                      +++||+|+||+|++|+.++..|...+.. ||++++..+ ..|+... +. .     ... ...+...  ..+. +.+.++
T Consensus         2 ~~~~V~I~GatG~iG~~l~~~L~~~p~~-el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~-~~~~~~   77 (349)
T PRK08664          2 MKLKVGILGATGMVGQRFVQLLANHPWF-EVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVV--STDP-EAVDDV   77 (349)
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEEcChhhcCCcccccccccccccccccccceEEE--eCCH-HHhcCC
Confidence            4579999999999999999988876643 888884433 2332221 10 0     000 0122221  1243 557899


Q ss_pred             CEEEEcC
Q 022947          116 DIVIIPA  122 (289)
Q Consensus       116 DiVIita  122 (289)
                      |+||.+.
T Consensus        78 DvVf~a~   84 (349)
T PRK08664         78 DIVFSAL   84 (349)
T ss_pred             CEEEEeC
Confidence            9998864

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=95.74  E-value=0.074  Score=53.13  Aligned_cols=109  Identities=17%  Similarity=0.236  Sum_probs=65.8

Q ss_pred             ccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-chhHHhhhhccc--CCc-e--------EEEEecCC
Q 022947           39 RAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMD--TNA-V--------VRGFLGQQ  106 (289)
Q Consensus        39 ~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~~g~~~DL~~~~--~~~-~--------v~~~~~t~  106 (289)
                      |+.+...+.||+|+|+ |.+|...+..+...|-  +|+.+|+++ ....+..+....  ... .        .+..  +.
T Consensus       158 taaG~~pg~kVlViGa-G~iGL~Ai~~Ak~lGA--~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~--s~  232 (509)
T PRK09424        158 TAAGKVPPAKVLVIGA-GVAGLAAIGAAGSLGA--IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVM--SE  232 (509)
T ss_pred             eccCCcCCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhc--ch
Confidence            4445666889999999 9999998888888885  799999987 222333222110  000 0        0000  11


Q ss_pred             CH--------HhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHH-HHHHHHHHHHhCCCcEEEEecCC
Q 022947          107 QL--------EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGI-VKTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       107 d~--------~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i-~~~i~~~i~~~~p~aiviv~tNP  165 (289)
                      ++        .+.++++|+||.|+|.|.++..          .. .++..+.   ..|.+.|+.++-+
T Consensus       233 ~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP----------~lit~~~v~~---mkpGgvIVdvg~~  287 (509)
T PRK09424        233 EFIKAEMALFAEQAKEVDIIITTALIPGKPAP----------KLITAEMVAS---MKPGSVIVDLAAE  287 (509)
T ss_pred             hHHHHHHHHHHhccCCCCEEEECCCCCcccCc----------chHHHHHHHh---cCCCCEEEEEccC
Confidence            21        2224789999999998754321          12 2444433   3478888878764

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=95.74  E-value=0.019  Score=54.46  Aligned_cols=70  Identities=21%  Similarity=0.398  Sum_probs=44.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCC-ccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~-~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      ||+|+||+|++|..++..|..+++ ..+++++......|+...+..    ..+...  ..+ .++++++|+||++.|.
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~----~~~~~~--~~~-~~~~~~~D~v~~a~g~   71 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKG----KELEVN--EAK-IESFEGIDIALFSAGG   71 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCC----eeEEEE--eCC-hHHhcCCCEEEECCCH
Confidence            699999999999999998887543 346666655443333332221    122221  112 2567999999999763

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.73  E-value=0.09  Score=41.09  Aligned_cols=93  Identities=17%  Similarity=0.200  Sum_probs=55.1

Q ss_pred             EEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCC---H-HhhhCCCCEEEEcCCC
Q 022947           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ---L-EDALTGMDIVIIPAGV  124 (289)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d---~-~eal~~aDiVIitag~  124 (289)
                      |.|+|. |.+|..++..|...+.  +++++|.++..  ...+.... ..-+.+  ..++   + +..+.+||.||++.+ 
T Consensus         1 vvI~G~-g~~~~~i~~~L~~~~~--~vvvid~d~~~--~~~~~~~~-~~~i~g--d~~~~~~l~~a~i~~a~~vv~~~~-   71 (116)
T PF02254_consen    1 VVIIGY-GRIGREIAEQLKEGGI--DVVVIDRDPER--VEELREEG-VEVIYG--DATDPEVLERAGIEKADAVVILTD-   71 (116)
T ss_dssp             EEEES--SHHHHHHHHHHHHTTS--EEEEEESSHHH--HHHHHHTT-SEEEES---TTSHHHHHHTTGGCESEEEEESS-
T ss_pred             eEEEcC-CHHHHHHHHHHHhCCC--EEEEEECCcHH--HHHHHhcc-cccccc--cchhhhHHhhcCccccCEEEEccC-
Confidence            679998 9999999999998764  89999998621  12122211 011111  1112   1 123689999988743 


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                                    |-..-..++..+++..|+..++...+
T Consensus        72 --------------~d~~n~~~~~~~r~~~~~~~ii~~~~   97 (116)
T PF02254_consen   72 --------------DDEENLLIALLARELNPDIRIIARVN   97 (116)
T ss_dssp             --------------SHHHHHHHHHHHHHHTTTSEEEEEES
T ss_pred             --------------CHHHHHHHHHHHHHHCCCCeEEEEEC
Confidence                          11223345566677788777666544

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK07340 ornithine cyclodeaminase; Validated

Probab=95.69  E-value=0.046  Score=50.99  Aligned_cols=71  Identities=13%  Similarity=0.153  Sum_probs=49.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHh-CCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEc
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~-~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIit  121 (289)
                      ...+|+|+|+ |..|...+..+.. .+ ..+|.++|++..  +..+.++...  ...+.    ..+.++++.++|+||.+
T Consensus       124 ~~~~v~IiGa-G~qa~~~~~al~~~~~-~~~v~v~~r~~~~a~~~a~~~~~~--~~~~~----~~~~~~av~~aDiVita  195 (304)
T PRK07340        124 PPGDLLLIGT-GVQARAHLEAFAAGLP-VRRVWVRGRTAASAAAFCAHARAL--GPTAE----PLDGEAIPEAVDLVVTA  195 (304)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhc--CCeeE----ECCHHHHhhcCCEEEEc
Confidence            3458999998 9999999887765 45 469999999862  3333334321  11222    24577899999999987


Q ss_pred             CC
Q 022947          122 AG  123 (289)
Q Consensus       122 ag  123 (289)
                      -.
T Consensus       196 T~  197 (304)
T PRK07340        196 TT  197 (304)
T ss_pred             cC
Confidence            43

>PLN02306 hydroxypyruvate reductase

Probab=95.69  E-value=0.074  Score=51.35  Aligned_cols=101  Identities=21%  Similarity=0.275  Sum_probs=58.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHH-hCCCccEEEEEeCCCchhHH---hhhhcc---cCCceEEEEecCCCHHhhhCCCCEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTPGVT---ADISHM---DTNAVVRGFLGQQQLEDALTGMDIV  118 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~-~~g~~~eI~LvD~~~~~g~~---~DL~~~---~~~~~v~~~~~t~d~~eal~~aDiV  118 (289)
                      .++|+|||. |.||+.+|..+. .-|.  +|..+|........   ..+...   ........ ....++++.++.||+|
T Consensus       165 gktvGIiG~-G~IG~~vA~~l~~~fGm--~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~L~ell~~sDiV  240 (386)
T PLN02306        165 GQTVGVIGA-GRIGSAYARMMVEGFKM--NLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTW-KRASSMEEVLREADVI  240 (386)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCC--EEEEECCCCchhhhhhhhhhcccccccccccccc-cccCCHHHHHhhCCEE
Confidence            458999998 999999998875 4566  89999976421110   011100   00001110 0123688999999999


Q ss_pred             EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       119 Iitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      ++..-.  .+ +        +-.++.  .+.++...|.+++|+++
T Consensus       241 ~lh~Pl--t~-~--------T~~lin--~~~l~~MK~ga~lIN~a  272 (386)
T PLN02306        241 SLHPVL--DK-T--------TYHLIN--KERLALMKKEAVLVNAS  272 (386)
T ss_pred             EEeCCC--Ch-h--------hhhhcC--HHHHHhCCCCeEEEECC
Confidence            997432  11 1        111111  13344455899999986

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=95.67  E-value=0.052  Score=52.89  Aligned_cols=106  Identities=21%  Similarity=0.280  Sum_probs=64.4

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      ...++|+|+|+ |.+|..++..|...|. .+|+++|++....  .++.... ...+..   ..++.+.+.++|+||.+.|
T Consensus       180 ~~~~~vlViGa-G~iG~~~a~~L~~~G~-~~V~v~~r~~~ra--~~la~~~-g~~~~~---~~~~~~~l~~aDvVI~aT~  251 (423)
T PRK00045        180 LSGKKVLVIGA-GEMGELVAKHLAEKGV-RKITVANRTLERA--EELAEEF-GGEAIP---LDELPEALAEADIVISSTG  251 (423)
T ss_pred             ccCCEEEEECc-hHHHHHHHHHHHHCCC-CeEEEEeCCHHHH--HHHHHHc-CCcEee---HHHHHHHhccCCEEEECCC
Confidence            34579999998 9999999988887774 5899999875221  1122111 011111   1355677899999999876


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCCCccc
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNST  169 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~-~p~aiviv~tNPvd~~  169 (289)
                      .+...         .+.+.++..   +..- ....+++=+++|-|+=
T Consensus       252 s~~~~---------i~~~~l~~~---~~~~~~~~~vviDla~Prdid  286 (423)
T PRK00045        252 APHPI---------IGKGMVERA---LKARRHRPLLLVDLAVPRDIE  286 (423)
T ss_pred             CCCcE---------EcHHHHHHH---HhhccCCCeEEEEeCCCCCCc
Confidence            54211         011122221   1111 3467888889998774

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=95.66  E-value=0.83  Score=42.68  Aligned_cols=37  Identities=22%  Similarity=0.336  Sum_probs=28.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      +++||+|||. |.+|..++..+...+.+.=+.++|+++
T Consensus         3 ~klrVAIIGt-G~IGt~hm~~l~~~~~velvAVvdid~   39 (302)
T PRK08300          3 SKLKVAIIGS-GNIGTDLMIKILRSEHLEPGAMVGIDP   39 (302)
T ss_pred             CCCeEEEEcC-cHHHHHHHHHHhcCCCcEEEEEEeCCh
Confidence            4679999997 999999887777655444456788876

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=95.65  E-value=0.11  Score=47.06  Aligned_cols=35  Identities=26%  Similarity=0.420  Sum_probs=31.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      ..||+|+|+ |.+|+.++..|+..|. .++.++|-+.
T Consensus        32 ~~~VliiG~-GglGs~va~~La~~Gv-g~i~lvD~D~   66 (245)
T PRK05690         32 AARVLVVGL-GGLGCAASQYLAAAGV-GTLTLVDFDT   66 (245)
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence            458999999 9999999999999995 6999999875

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=95.63  E-value=0.14  Score=40.73  Aligned_cols=72  Identities=25%  Similarity=0.314  Sum_probs=39.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEE-eCCCchhHHhhhhcccCC-ceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNTPGVTADISHMDTN-AVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~Lv-D~~~~~g~~~DL~~~~~~-~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      ||+|+|++|.+|..++..+...+.+ +++.+ +.++..+......+.... .....+. ..+++  ..++|+||++.+
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~-~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~DvV~~~~~   74 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDF-EVVALAASARSAGKRVSEAGPHLKGEVVLELE-PEDFE--ELAVDIVFLALP   74 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCc-eEEEEEechhhcCcCHHHHCcccccccccccc-cCChh--hcCCCEEEEcCC
Confidence            6899997799999998888875433 45444 654322222211221100 0011111 12332  359999999853

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK07791 short chain dehydrogenase; Provisional

Probab=95.62  E-value=0.34  Score=44.21  Aligned_cols=35  Identities=31%  Similarity=0.407  Sum_probs=30.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .+.+.|+||++.+|..++..|+..|.  +|+++|.+.
T Consensus         6 ~k~~lITGas~GIG~aia~~la~~G~--~vii~~~~~   40 (286)
T PRK07791          6 GRVVIVTGAGGGIGRAHALAFAAEGA--RVVVNDIGV   40 (286)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEeeCCc
Confidence            45899999999999999999999997  889988753

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.59  E-value=0.1  Score=50.02  Aligned_cols=34  Identities=29%  Similarity=0.548  Sum_probs=30.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV   81 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~   81 (289)
                      ..||.|+|+ |-+|+.++..|+..|. .+|.++|.+
T Consensus       135 ~~~VlvvG~-GG~Gs~ia~~La~~Gv-g~i~lvD~d  168 (376)
T PRK08762        135 EARVLLIGA-GGLGSPAALYLAAAGV-GTLGIVDHD  168 (376)
T ss_pred             cCcEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence            458999998 9999999999999995 689999987

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.59  E-value=0.041  Score=50.88  Aligned_cols=56  Identities=21%  Similarity=0.374  Sum_probs=45.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      ..++|+|||.||.||..++..|+..|.  .|.++.             ..          +.++++.+++||+||.+.|.
T Consensus       157 ~Gk~v~vIG~S~ivG~Pla~lL~~~ga--tVtv~~-------------s~----------t~~l~~~~~~ADIVI~avg~  211 (284)
T PRK14179        157 EGKHAVVIGRSNIVGKPMAQLLLDKNA--TVTLTH-------------SR----------TRNLAEVARKADILVVAIGR  211 (284)
T ss_pred             CCCEEEEECCCCcCcHHHHHHHHHCCC--EEEEEC-------------CC----------CCCHHHHHhhCCEEEEecCc
Confidence            357999999999999999999998886  776652             11          22466789999999999886


Q ss_pred             C
Q 022947          125 P  125 (289)
Q Consensus       125 ~  125 (289)
                      |
T Consensus       212 ~  212 (284)
T PRK14179        212 G  212 (284)
T ss_pred             c
Confidence            6

>PRK07041 short chain dehydrogenase; Provisional

Probab=95.58  E-value=0.078  Score=46.16  Aligned_cols=107  Identities=16%  Similarity=0.199  Sum_probs=59.8

Q ss_pred             EEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEE----ecCCCHHhhh---CCCCEEEEc
Q 022947           51 VLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGF----LGQQQLEDAL---TGMDIVIIP  121 (289)
Q Consensus        51 IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~----~~t~d~~eal---~~aDiVIit  121 (289)
                      |+||+|.+|..++..|++.|.  +|+++++++.  .....++..   ...+..+    ....++.+++   ...|++|..
T Consensus         2 ItGas~~iG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~   76 (230)
T PRK07041          2 VVGGSSGIGLALARAFAAEGA--RVTIASRSRDRLAAAARALGG---GAPVRTAALDITDEAAVDAFFAEAGPFDHVVIT   76 (230)
T ss_pred             eecCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhc---CCceEEEEccCCCHHHHHHHHHhcCCCCEEEEC
Confidence            899999999999999999997  8999998752  111222221   1112211    1112233333   347999999


Q ss_pred             CCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          122 AGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       122 ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      +|.....   ..+   -.+.+..|+.....+.+ +....+.+.+++++
T Consensus        77 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~-~~~~~~~g~iv~~s  123 (230)
T PRK07041         77 AADTPGGPVRALPLAAAQAAMDSKFWGAYRVAR-AARIAPGGSLTFVS  123 (230)
T ss_pred             CCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHh-hhhhcCCeEEEEEC
Confidence            9864321   111   22345566665555555 22233445555543

>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional

Probab=95.58  E-value=0.11  Score=45.50  Aligned_cols=33  Identities=21%  Similarity=0.295  Sum_probs=27.4

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEE-eCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVV   81 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~Lv-D~~   81 (289)
                      +.+.|+||+|++|..++..|+..|.  +|++. +.+
T Consensus         2 ~~~lItGa~g~iG~~l~~~l~~~g~--~v~~~~~~~   35 (247)
T PRK09730          2 AIALVTGGSRGIGRATALLLAQEGY--TVAVNYQQN   35 (247)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCC
Confidence            3689999999999999999999987  77664 443

>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]

Probab=95.57  E-value=0.066  Score=46.33  Aligned_cols=114  Identities=22%  Similarity=0.215  Sum_probs=74.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCc----eEEEEecCCCHHhhhCCCCEEEE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNA----VVRGFLGQQQLEDALTGMDIVII  120 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~----~v~~~~~t~d~~eal~~aDiVIi  120 (289)
                      ++|...|+||+|.+|..+...++..+.++.|+++-+.+.       -+..+..    ....+..-+++.+++.+-|+.|.
T Consensus        17 q~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~-------~d~at~k~v~q~~vDf~Kl~~~a~~~qg~dV~Fc   89 (238)
T KOG4039|consen   17 QNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRREL-------PDPATDKVVAQVEVDFSKLSQLATNEQGPDVLFC   89 (238)
T ss_pred             hccceEEEeccccccHHHHHHHHhcccceeEEEEEeccC-------CCccccceeeeEEechHHHHHHHhhhcCCceEEE
Confidence            467889999999999999999999999999999987641       1111111    11112222456788999999999


Q ss_pred             cCCCCC-CCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 022947          121 PAGVPR-KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (289)
Q Consensus       121 tag~~~-~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd  167 (289)
                      +-|.-| +.|-+  .+....-+.+.+.++..++.+-+-++++.|--.|
T Consensus        90 aLgTTRgkaGad--gfykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd  135 (238)
T KOG4039|consen   90 ALGTTRGKAGAD--GFYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGAD  135 (238)
T ss_pred             eecccccccccC--ceEeechHHHHHHHHHHHhCCCeEEEEEeccCCC
Confidence            877654 33322  1223344566677777776666777777654333

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.57  E-value=0.06  Score=44.63  Aligned_cols=55  Identities=29%  Similarity=0.452  Sum_probs=44.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      .++|.|+|.+..+|..++..|..++.  .+.+++.+                       +.++++++++||+||.+.|.+
T Consensus        28 gk~v~VvGrs~~vG~pla~lL~~~ga--tV~~~~~~-----------------------t~~l~~~v~~ADIVvsAtg~~   82 (140)
T cd05212          28 GKKVLVVGRSGIVGAPLQCLLQRDGA--TVYSCDWK-----------------------TIQLQSKVHDADVVVVGSPKP   82 (140)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEeCCC-----------------------CcCHHHHHhhCCEEEEecCCC
Confidence            45999999999999999999988876  77777532                       124668899999999998865

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>TIGR01500 sepiapter_red sepiapterin reductase

Probab=95.57  E-value=0.24  Score=44.17  Aligned_cols=33  Identities=27%  Similarity=0.268  Sum_probs=28.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHh----CCCccEEEEEeCCC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKI----NPLVSVLHLYDVVN   82 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~----~g~~~eI~LvD~~~   82 (289)
                      .+.|+||++.+|..++..|+.    .|.  .|++.++++
T Consensus         2 ~vlItGas~GIG~~~a~~la~~~~~~g~--~V~~~~r~~   38 (256)
T TIGR01500         2 VCLVTGASRGFGRTIAQELAKCLKSPGS--VLVLSARND   38 (256)
T ss_pred             EEEEecCCCchHHHHHHHHHHhhccCCc--EEEEEEcCH
Confidence            478999999999999998886    565  899999876

This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=95.54  E-value=0.1  Score=48.39  Aligned_cols=115  Identities=10%  Similarity=0.024  Sum_probs=65.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCC-CccEEEEEeCCCch--hHHhhhhcccCCceEEEEe-cCCC---HHhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFL-GQQQ---LEDA-------  111 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g-~~~eI~LvD~~~~~--g~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------  111 (289)
                      .+.+.|+||++.+|..++..|+..| .  .|++.++++..  ....++...  ...+..+. +-++   .++.       
T Consensus         3 ~k~vlITGas~GIG~aia~~L~~~G~~--~V~l~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~   78 (314)
T TIGR01289         3 KPTVIITGASSGLGLYAAKALAATGEW--HVIMACRDFLKAEQAAKSLGMP--KDSYTIMHLDLGSLDSVRQFVQQFRES   78 (314)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCCC--EEEEEeCCHHHHHHHHHHhcCC--CCeEEEEEcCCCCHHHHHHHHHHHHHh
Confidence            3478999999999999999999988 6  89999887621  112222211  11121110 1111   1111       


Q ss_pred             hCCCCEEEEcCCCCCCC----CCch---hhHHHhhHH----HHHHHHHHHHHhCC-CcEEEEecC
Q 022947          112 LTGMDIVIIPAGVPRKP----GMTR---DDLFNINAG----IVKTLCEGIAKCCP-KAIVNLISN  164 (289)
Q Consensus       112 l~~aDiVIitag~~~~~----g~~r---~d~~~~N~~----i~~~i~~~i~~~~p-~aiviv~tN  164 (289)
                      +...|++|..||.....    ..+.   ...+..|+.    +++.+.+.+++... .+.|+++|.
T Consensus        79 ~~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS  143 (314)
T TIGR01289        79 GRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGS  143 (314)
T ss_pred             CCCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEec
Confidence            24689999999964221    1121   223455543    45666666665432 356666653

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=95.52  E-value=0.06  Score=50.64  Aligned_cols=73  Identities=15%  Similarity=0.205  Sum_probs=49.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      ..+++|||+ |..+...+..|.....+.+|.+++++..  +..+.++.+.. ...+..   .+++++++++||+||.+-.
T Consensus       129 ~~~v~iiGa-G~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~-g~~v~~---~~~~~~av~~aDiVvtaT~  203 (326)
T TIGR02992       129 SSVVAIFGA-GMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL-GIDVTA---ATDPRAAMSGADIIVTTTP  203 (326)
T ss_pred             CcEEEEECC-CHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc-CceEEE---eCCHHHHhccCCEEEEecC
Confidence            358999998 9999988887764333578999999863  33333343211 122222   2467889999999998743

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK06141 ornithine cyclodeaminase; Validated

Probab=95.48  E-value=0.065  Score=50.15  Aligned_cols=71  Identities=17%  Similarity=0.266  Sum_probs=47.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHh-CCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEc
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~-~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIit  121 (289)
                      ...+|+|||+ |.+|...+..+.. .+ ..+|.++++++.  +..+.++.+.  ...+..   ..+.++++++||+|+.+
T Consensus       124 ~~~~v~iiG~-G~~a~~~~~al~~~~~-~~~V~V~~Rs~~~a~~~a~~~~~~--g~~~~~---~~~~~~av~~aDIVi~a  196 (314)
T PRK06141        124 DASRLLVVGT-GRLASLLALAHASVRP-IKQVRVWGRDPAKAEALAAELRAQ--GFDAEV---VTDLEAAVRQADIISCA  196 (314)
T ss_pred             CCceEEEECC-cHHHHHHHHHHHhcCC-CCEEEEEcCCHHHHHHHHHHHHhc--CCceEE---eCCHHHHHhcCCEEEEe
Confidence            3568999998 9999999875554 44 569999998762  3333333321  112332   24567889999999665


Q ss_pred             C
Q 022947          122 A  122 (289)
Q Consensus       122 a  122 (289)
                      .
T Consensus       197 T  197 (314)
T PRK06141        197 T  197 (314)
T ss_pred             e
Confidence            3

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=95.44  E-value=0.18  Score=55.85  Aligned_cols=117  Identities=13%  Similarity=0.039  Sum_probs=69.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCC--CccEEEEEeCCCchhH-Hhhhhcc---------cCCceEEEEec---------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINP--LVSVLHLYDVVNTPGV-TADISHM---------DTNAVVRGFLG---------  104 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g--~~~eI~LvD~~~~~g~-~~DL~~~---------~~~~~v~~~~~---------  104 (289)
                      .++|.|+|++|++|++++..|+..+  ...+|++..+...... ...+.+.         ....++..+.+         
T Consensus       971 ~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lgl 1050 (1389)
T TIGR03443       971 PITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFGL 1050 (1389)
T ss_pred             CceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCccCCc
Confidence            5799999999999999998888766  3336776666541111 1111110         00012332211         


Q ss_pred             -CCCHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          105 -QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       105 -t~d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                       ...+.+...++|+||++|+... ......++...|+...+++++...+.....++.+.|
T Consensus      1051 ~~~~~~~l~~~~d~iiH~Aa~~~-~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~vSS 1109 (1389)
T TIGR03443      1051 SDEKWSDLTNEVDVIIHNGALVH-WVYPYSKLRDANVIGTINVLNLCAEGKAKQFSFVSS 1109 (1389)
T ss_pred             CHHHHHHHHhcCCEEEECCcEec-CccCHHHHHHhHHHHHHHHHHHHHhCCCceEEEEeC
Confidence             1124455678999999987542 222334444569999999999887765444444434

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=95.43  E-value=0.13  Score=42.24  Aligned_cols=116  Identities=18%  Similarity=0.178  Sum_probs=70.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC----chhHHhhhhcccCCceEEEEec-CCC----------HHhhh
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTNAVVRGFLG-QQQ----------LEDAL  112 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~----~~g~~~DL~~~~~~~~v~~~~~-t~d----------~~eal  112 (289)
                      .+.|+||+|-+|..++..|+..|- ..|+++++++    ......++...  ..++..+.. ..+          ..+..
T Consensus         2 ~~lItGa~~giG~~~a~~l~~~g~-~~v~~~~r~~~~~~~~~l~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (167)
T PF00106_consen    2 TVLITGASSGIGRALARALARRGA-RVVILTSRSEDSEGAQELIQELKAP--GAKITFIECDLSDPESIRALIEEVIKRF   78 (167)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTT-EEEEEEESSCHHHHHHHHHHHHHHT--TSEEEEEESETTSHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCc-eEEEEeeeccccccccccccccccc--cccccccccccccccccccccccccccc
Confidence            688999999999999999998852 4789998872    11122223321  122332210 111          11234


Q ss_pred             CCCCEEEEcCCCCCCCCC---c---hhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 022947          113 TGMDIVIIPAGVPRKPGM---T---RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g~---~---r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd  167 (289)
                      ...|++|.++|.......   +   -.+.+..|+.....+.+.+.. .+.+.|+++|....
T Consensus        79 ~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~g~iv~~sS~~~  138 (167)
T PF00106_consen   79 GPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLP-QGGGKIVNISSIAG  138 (167)
T ss_dssp             SSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH-HTTEEEEEEEEGGG
T ss_pred             ccccccccccccccccccccccchhhhhccccccceeeeeeehhee-ccccceEEecchhh
Confidence            589999999998652211   1   123566676666666666666 55788888775543

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK07589 ornithine cyclodeaminase; Validated

Probab=95.43  E-value=0.06  Score=51.22  Aligned_cols=71  Identities=18%  Similarity=0.287  Sum_probs=49.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      ..+++|||+ |..+...+..+..-..+.+|.++|++.  .+..+.++.+.  ..++..   .++.++++++||+|+.+-
T Consensus       129 a~~l~iiGa-G~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~--~~~v~~---~~~~~~av~~ADIIvtaT  201 (346)
T PRK07589        129 SRTMALIGN-GAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGP--GLRIVA---CRSVAEAVEGADIITTVT  201 (346)
T ss_pred             CcEEEEECC-cHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhc--CCcEEE---eCCHHHHHhcCCEEEEec
Confidence            458999998 999988776555433468999999987  23344444431  123333   246889999999999864

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=95.42  E-value=0.13  Score=47.18  Aligned_cols=67  Identities=18%  Similarity=0.190  Sum_probs=40.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCC-ccEEE-EEeCCCchhHHhhhhcccCCceEEEEecCCCHHhh-hCCCCEEEEcC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPL-VSVLH-LYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDA-LTGMDIVIIPA  122 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~-~~eI~-LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~ea-l~~aDiVIita  122 (289)
                      .+||+|||. |.+|..++..|..... .-+++ ++|.+.  ....++...   +.  .   .+++++- ....|+||.||
T Consensus         2 ~~rvgiIG~-GaIG~~va~~l~~~~~~~~~l~~V~~~~~--~~~~~~~~~---~~--~---~~~l~~ll~~~~DlVVE~A   70 (267)
T PRK13301          2 THRIAFIGL-GAIASDVAAGLLADAAQPCQLAALTRNAA--DLPPALAGR---VA--L---LDGLPGLLAWRPDLVVEAA   70 (267)
T ss_pred             ceEEEEECc-cHHHHHHHHHHhcCCCCceEEEEEecCCH--HHHHHhhcc---Cc--c---cCCHHHHhhcCCCEEEECC
Confidence            469999998 9999999988865432 11443 344432  122222221   11  1   1356442 37899999998


Q ss_pred             C
Q 022947          123 G  123 (289)
Q Consensus       123 g  123 (289)
                      +
T Consensus        71 ~   71 (267)
T PRK13301         71 G   71 (267)
T ss_pred             C
Confidence            6

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.42  E-value=0.055  Score=50.13  Aligned_cols=57  Identities=19%  Similarity=0.382  Sum_probs=44.6

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      -+.++|+|||.++.||..++..|...+-  .|..++..                       |.++++.+++||+||.+.|
T Consensus       156 l~Gk~vvVIGrs~~VG~pla~lL~~~ga--tVtv~~s~-----------------------t~~l~~~~~~ADIVIsAvg  210 (286)
T PRK14175        156 LEGKNAVVIGRSHIVGQPVSKLLLQKNA--SVTILHSR-----------------------SKDMASYLKDADVIVSAVG  210 (286)
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHHCCC--eEEEEeCC-----------------------chhHHHHHhhCCEEEECCC
Confidence            3467999999955599999999988875  77766531                       1256688999999999988


Q ss_pred             CC
Q 022947          124 VP  125 (289)
Q Consensus       124 ~~  125 (289)
                      .|
T Consensus       211 ~p  212 (286)
T PRK14175        211 KP  212 (286)
T ss_pred             CC
Confidence            76

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.41  E-value=0.05  Score=50.35  Aligned_cols=55  Identities=24%  Similarity=0.436  Sum_probs=43.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      .++|+|+|++|.+|..+++.|+..+.  +|.+++..                       +.++.+.+++||+||.+.|.|
T Consensus       159 Gk~vvViG~gg~vGkpia~~L~~~ga--tVtv~~~~-----------------------t~~L~~~~~~aDIvI~AtG~~  213 (283)
T PRK14192        159 GKHAVVVGRSAILGKPMAMMLLNANA--TVTICHSR-----------------------TQNLPELVKQADIIVGAVGKP  213 (283)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhCCC--EEEEEeCC-----------------------chhHHHHhccCCEEEEccCCC
Confidence            57999999944599999999988885  88887531                       124567789999999998744

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=95.40  E-value=0.051  Score=50.44  Aligned_cols=96  Identities=17%  Similarity=0.293  Sum_probs=65.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      .++|+.||- |.+|++.+..|+..|+  .|+.||++.  .+..++....  .++.     ..+.|..++||+||.+.+.|
T Consensus        35 ~~~iGFIGL-G~MG~~M~~nLik~G~--kVtV~dr~~--~k~~~f~~~G--a~v~-----~sPaeVae~sDvvitmv~~~  102 (327)
T KOG0409|consen   35 KTRIGFIGL-GNMGSAMVSNLIKAGY--KVTVYDRTK--DKCKEFQEAG--ARVA-----NSPAEVAEDSDVVITMVPNP  102 (327)
T ss_pred             cceeeEEee-ccchHHHHHHHHHcCC--EEEEEeCcH--HHHHHHHHhc--hhhh-----CCHHHHHhhcCEEEEEcCCh
Confidence            569999998 9999999999999999  999999874  3344555543  2222     24568899999999987644


Q ss_pred             CC----------------CCCch-hhHHHhhHHHHHHHHHHHHHh
Q 022947          126 RK----------------PGMTR-DDLFNINAGIVKTLCEGIAKC  153 (289)
Q Consensus       126 ~~----------------~g~~r-~d~~~~N~~i~~~i~~~i~~~  153 (289)
                      ..                +|..- .|.-...-...+++.+.+..-
T Consensus       103 ~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~  147 (327)
T KOG0409|consen  103 KDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNK  147 (327)
T ss_pred             HhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhC
Confidence            21                12111 233333445667777777643

>PRK08223 hypothetical protein; Validated

Probab=95.35  E-value=0.078  Score=49.12  Aligned_cols=35  Identities=20%  Similarity=0.287  Sum_probs=31.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      ..||.|+|+ |-+|+.++..|+..|+ .+|.|+|-+.
T Consensus        27 ~s~VlIvG~-GGLGs~va~~LA~aGV-G~i~lvD~D~   61 (287)
T PRK08223         27 NSRVAIAGL-GGVGGIHLLTLARLGI-GKFTIADFDV   61 (287)
T ss_pred             cCCEEEECC-CHHHHHHHHHHHHhCC-CeEEEEeCCC
Confidence            458999999 9999999999999996 5999999875

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=95.32  E-value=0.049  Score=46.27  Aligned_cols=66  Identities=24%  Similarity=0.315  Sum_probs=42.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      .+++.|+|- |.+|..+|..|...|.  .|..+|+++...... ..+.   ..+.      .++++++.+|++|.+-|.
T Consensus        23 Gk~vvV~GY-G~vG~g~A~~lr~~Ga--~V~V~e~DPi~alqA-~~dG---f~v~------~~~~a~~~adi~vtaTG~   88 (162)
T PF00670_consen   23 GKRVVVIGY-GKVGKGIARALRGLGA--RVTVTEIDPIRALQA-AMDG---FEVM------TLEEALRDADIFVTATGN   88 (162)
T ss_dssp             TSEEEEE---SHHHHHHHHHHHHTT---EEEEE-SSHHHHHHH-HHTT----EEE-------HHHHTTT-SEEEE-SSS
T ss_pred             CCEEEEeCC-CcccHHHHHHHhhCCC--EEEEEECChHHHHHh-hhcC---cEec------CHHHHHhhCCEEEECCCC
Confidence            358999999 9999999999998886  999999988221111 1121   1222      357899999998887653

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=95.30  E-value=0.25  Score=41.63  Aligned_cols=66  Identities=11%  Similarity=0.089  Sum_probs=43.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      .+||.|||+ |.||...+..|+..|.  +|++++..... ...++..    ..+.  ...-. ++.+.++|+||.+.
T Consensus        13 ~~~vlVvGG-G~va~rka~~Ll~~ga--~V~VIsp~~~~-~l~~l~~----i~~~--~~~~~-~~dl~~a~lViaaT   78 (157)
T PRK06719         13 NKVVVIIGG-GKIAYRKASGLKDTGA--FVTVVSPEICK-EMKELPY----ITWK--QKTFS-NDDIKDAHLIYAAT   78 (157)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCccCH-HHHhccC----cEEE--ecccC-hhcCCCceEEEECC
Confidence            358999999 9999999999999887  89999643221 2222211    1111  11111 35689999999873

>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional

Probab=95.30  E-value=0.021  Score=53.58  Aligned_cols=69  Identities=13%  Similarity=0.204  Sum_probs=48.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCC-ccEEEEEeCC-CchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVV-NTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~-~~eI~LvD~~-~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      .++|+| ||+|.||..+...|.++++ .+++.|++.. ...|+...+..    ..+....-+   ++++++.|++|+ +|
T Consensus         3 ~~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i~f~g----~~~~V~~l~---~~~f~~vDia~f-ag   73 (322)
T PRK06901          3 TLNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGIRFNN----KAVEQIAPE---EVEWADFNYVFF-AG   73 (322)
T ss_pred             cceEEE-ecCcHHHHHHHHHHHhcCCchhheeecccccccCCCEEEECC----EEEEEEECC---ccCcccCCEEEE-cC
Confidence            468999 9999999999999988874 6889999876 44443333321    223322111   256899999999 65

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.29  E-value=0.065  Score=49.64  Aligned_cols=56  Identities=27%  Similarity=0.451  Sum_probs=44.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      ..++|+|||.|..||..++.+|..++-  .|.+..             .          .|.|+++.++.||+||.++|.
T Consensus       154 ~Gk~vvViGrS~iVGkPla~lL~~~~a--TVtich-------------s----------~T~~l~~~~~~ADIvIsAvGk  208 (287)
T PRK14173        154 AGKEVVVVGRSNIVGKPLAALLLREDA--TVTLAH-------------S----------KTQDLPAVTRRADVLVVAVGR  208 (287)
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHCCC--EEEEeC-------------C----------CCCCHHHHHhhCCEEEEecCC
Confidence            357999999999999999999987774  555542             1          134677889999999999987


Q ss_pred             C
Q 022947          125 P  125 (289)
Q Consensus       125 ~  125 (289)
                      |
T Consensus       209 p  209 (287)
T PRK14173        209 P  209 (287)
T ss_pred             c
Confidence            6

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	289
1sev_A	362	Mature And Translocatable Forms Of Glyoxysomal Mala		1e-137
1smk_A	326	Mature And Translocatable Forms Of Glyoxysomal Mala		1e-123
2dfd_A	342	Crystal Structure Of Human Malate Dehydrogenase Typ		4e-82
1mld_A	314	Refined Structure Of Mitochondrial Malate Dehydroge		2e-81
2pwz_A	312	Crystal Structure Of The Apo Form Of E.Coli Malate		7e-73
1emd_A	312	Crystal Structure Of A Ternary Complex Of Escherich		1e-72
1ib6_A	312	Crystal Structure Of R153c E. Coli Malate Dehydroge		2e-71
4e0b_A	313	2.17 Angstrom Resolution Crystal Structure Of Malat		6e-70
2hjr_A	328	Crystal Structure Of Cryptosporidium Parvum Malate		2e-21
1guz_A	310	Structural Basis For Thermophilic Protein Stability		4e-20
1gv1_A	310	Structural Basis For Thermophilic Protein Stability		8e-20
3tl2_A	315	Crystal Structure Of Bacillus Anthracis Str. Ames M		8e-20
3p7m_A	321	Structure Of Putative Lactate Dehydrogenase From Fr		8e-20
3gvh_A	324	Crystal Structure Of LactateMALATE DEHYDROGENASE FR		1e-18
1pze_A	331	T.gondii Ldh1 Apo Form Length = 331		3e-18
3om9_A	329	T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex		3e-18
1pzg_A	331	T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.		3e-18
1gv0_A	310	Structural Basis For Thermophilic Protein Stability		8e-17
1uxi_A	309	Large Improvement In The Thermal Stability Of A Tet		9e-17
1uxh_A	309	Large Improvement In The Thermal Stability Of A Tet		1e-16
1guy_A	309	Structural Basis For Thermophilic Protein Stability		2e-16
1ur5_A	309	Stabilization Of A Tetrameric Malate Dehydrogenase		2e-16
1a5z_A	319	Lactate Dehydrogenase From Thermotoga Maritima (tml		2e-16
2fm3_A	321	Crystal Structure Of The Lactate Dehydrogenase From		2e-15
3czm_A	326	T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex		2e-15
1sov_A	328	Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Ap		2e-15
2ewd_A	317	Crystal Structure Of The Lactate Dehydrogenase From		2e-15
1hyg_A	313	Crystal Structure Of Mj0490 Gene Product, The Famil		3e-15
2d4a_A	308	Structure Of The Malate Dehydrogenase From Aeropyru		4e-14
1t24_A	322	Plasmodium Falciparum Lactate Dehydrogenase Complex		1e-13
1xiv_A	323	Plasmodium Falciparum Lactate Dehydrogenase Complex		1e-13
1u4o_A	321	Plasmodium Falciparum Lactate Dehydrogenase Complex		1e-13
1ceq_A	316	Chloroquine Binds In The Cofactor Binding Site Of P		1e-13
1t2e_A	322	Plasmodium Falciparum Lactate Dehydrogenase S245a,		2e-13
1y6j_A	318	L-Lactate Dehydrogenase From Clostridium Thermocell		2e-13
2a92_A	321	Crystal Structure Of Lactate Dehydrogenase From Pla		4e-13
3nep_X	314	1.55a Resolution Structure Of Malate Dehydrogenase		6e-13
1oc4_A	322	Lactate Dehydrogenase From Plasmodium Berghei Lengt		9e-13
1cet_A	316	Chloroquine Binds In The Cofactor Binding Site Of P		2e-12
3fi9_A	343	Crystal Structure Of Malate Dehydrogenase From Porp		4e-11
2zqy_A	326	T-State Structure Of Allosteric L-Lactate Dehydroge		6e-10
4a73_A	310	Single Point Mutant Of Thermus Thermophilus Lactate		6e-10
2e37_A	310	Structure Of Tt0471 Protein From Thermus Thermophil		8e-10
2v6m_A	310	Crystal Structure Of Lactate Dehydrogenase From The		1e-09
3vku_A	326	Penta Mutant Of Lactobacillus Casei Lactate Dehydro		2e-09
1llc_A	325	Structure Determination Of The Allosteric L-Lactate		2e-09
2xxb_A	310	Penta-Mutant Of Thermus Thermophilus Lactate Dehydr		3e-09
4h7p_A	345	Crystal Structure Of A Putative Cytosolic Malate De		5e-09
1ez4_A	318	Crystal Structure Of Non-Allosteric L-Lactate Dehyd		5e-09
3pqd_A	326	Crystal Structure Of L-Lactate Dehydrogenase From B		7e-09
3pqe_A	326	Crystal Structure Of L-Lactate Dehydrogenase From B		2e-08
2hlp_A	303	Crystal Structure Of The E267r Mutant Of A Halophil		2e-08
3d0o_A	317	Crystal Structure Of Lactate Dehydrogenase From Sta		2e-08
2j5k_A	304	2.0 A Resolution Structure Of The Wild Type Malate		2e-08
1hlp_A	303	Structural Features Stabilizing Halophilic Malate D		2e-08
3h3j_A	317	Crystal Structure Of Lactate Dehydrogenase Mutant (		2e-08
2x0i_A	294	2.9 A Resolution Structure Of Malate Dehydrogenase		3e-08
2x0r_A	304	R207s,R292s Mutant Of Malate Dehydrogenase From The		4e-08
1o6z_A	303	1.95 A Resolution Structure Of (r207s,r292s) Mutant		4e-08
1lld_A	319	Molecular Basis Of Allosteric Activation Of Bacteri		5e-08
1ldn_A	316	Structure Of A Ternary Complex Of An Allosteric Lac		7e-08
1ldb_A	317	Structure Determination And Refinement Of Bacillus		8e-08
4mdh_A	334	Refined Crystal Structure Of Cytoplasmic Malate Deh		1e-07
5mdh_A	333	Crystal Structure Of Ternary Complex Of Porcine Cyt		1e-07
1bmd_A	327	Determinants Of Protein Thermostability Observed In		1e-07
1iz9_A	327	Crystal Structure Of Malate Dehydrogenase From Ther		1e-07
2v6b_A	304	Crystal Structure Of Lactate Dehydrogenase From Dei		3e-07
1wze_A	327	Structural Basis For Alteration Of Cofactor Specifi		3e-07
1i10_A	331	Human Muscle L-Lactate Dehydrogenase M Chain, Terna		4e-07
4ajp_A	337	Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-		4e-07
1bdm_A	327	The Structure At 1.8 Angstroms Resolution Of A Sing		7e-07
2v65_A	331	Apo Ldh From The Psychrophile C. Gunnari Length = 3		7e-07
4aj1_A	331	Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Be		6e-06
4aj4_A	332	Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Be		6e-06
2ldx_A	331	Characterization Of The Antigenic Sites On The Refi		7e-06
9ldt_A	332	Design And Synthesis Of New Enzymes Based On The La		8e-06
1v6a_A	332	Crystal Structure Of L-Lactate Dehydrogenase From C		9e-06
1i0z_A	333	Human Heart L-Lactate Dehydrogenase H Chain, Ternar		1e-05
1t2f_A	333	Human B Lactate Dehydrogenase Complexed With Nad+ A		1e-05
5ldh_A	334	Structure Of The Active Ternary Complex Of Pig Hear		5e-05
3h3f_A	331	Rabbit Muscle L-Lactate Dehydrogenase In Complex Wi		6e-05
6ldh_A	330	Refined Crystal Structure Of Dogfish M4 Apo-Lactate		9e-05
1ldm_A	329	Refined Crystal Structure Of Dogfish M4 Apo-Lactate		9e-05

>pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 362

Iteration: 1
 Score =  482 bits (1241), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 238/271 (87%), Positives = 249/271 (91%), Gaps = 1/271 (0%)
Query: 3   QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPL 62
           QP    NQRIARI+AHLHPP  Q+E ESS L R +CRAKGG+PGFKVA+LGAAGGIGQPL
Sbjct: 2   QPIPDVNQRIARISAHLHPPKSQME-ESSALRRANCRAKGGAPGFKVAILGAAGGIGQPL 60
Query: 63  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQQQLE ALTGMD++I+PA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPA 120
Query: 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT 182
           GVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP+AIVNLISNPVNSTVPIAAEVFKK GT
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGT 180
Query: 183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP 242
           YDPKRLLGVTMLDVVRANTFVAEVLGLDPR+VDVPVVGGHAGVTILPLLSQVKP  S T 
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQ 240
Query: 243 TEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
            EI YLTDRIQNGGTEVVEAK GAGSATLSM
Sbjct: 241 EEISYLTDRIQNGGTEVVEAKAGAGSATLSM 271

>pdb|1SMK|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 326

Iteration: 1
 Score =  438 bits (1127), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 215/235 (91%), Positives = 223/235 (94%)
Query: 39  RAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAV 98
           RAKGG+PGFKVA+LGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AV
Sbjct: 1   RAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAV 60
Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
           VRGFLGQQQLE ALTGMD++I+PAGVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP+AI
Sbjct: 61  VRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAI 120
Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPV 218
           VNLISNPVNSTVPIAAEVFKK GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPR+VDVPV
Sbjct: 121 VNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV 180
Query: 219 VGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
           VGGHAGVTILPLLSQVKP  S T  EI YLTDRIQNGGTEVVEAK GAGSATLSM
Sbjct: 181 VGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSM 235

>pdb|2DFD|A Chain A, Crystal Structure Of Human Malate Dehydrogenase Type 2 Length = 342

Iteration: 1
 Score =  301 bits (770), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 146/226 (64%), Positives = 180/226 (79%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
           KVAVLGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG +Q
Sbjct: 30  KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKAAVKGYLGPEQ 89
Query: 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
           L D L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP+A++ +I+NPVN
Sbjct: 90  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICVIANPVN 149
Query: 168 STVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
           ST+PI AEVFKK G Y+P ++ GVT LD+VRANTFVAE+ GLDP  V+VPV+GGHAG TI
Sbjct: 150 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTI 209
Query: 228 LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
           +PL+SQ  P       ++  LT RIQ  GTEVV+AK GAGSATLSM
Sbjct: 210 IPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSATLSM 255

>pdb|1MLD|A Chain A, Refined Structure Of Mitochondrial Malate Dehydrogenase From Porcine Heart And The Consensus Structure For Dicarboxylic Acid Oxidoreductases Length = 314

Iteration: 1
 Score =  298 bits (764), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 146/226 (64%), Positives = 177/226 (78%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
           KVAVLGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG +Q
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61
Query: 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
           L D L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP A++ +ISNPVN
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121
Query: 168 STVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
           ST+PI AEVFKK G Y+P ++ GVT LD+VRAN FVAE+ GLDP  V VPV+GGHAG TI
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 181
Query: 228 LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
           +PL+SQ  P       ++  LT RIQ  GTEVV+AK GAGSATLSM
Sbjct: 182 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSM 227

>pdb|2PWZ|A Chain A, Crystal Structure Of The Apo Form Of E.Coli Malate Dehydrogenase Length = 312

Iteration: 1
 Score =  270 bits (690), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 143/228 (62%), Positives = 169/228 (74%), Gaps = 4/228 (1%)
Query: 48  KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVV-NTPGVTADISHMDTNAVVRGFLGQ 105
           KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61
Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
                AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I+NP
Sbjct: 62  DA-TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120
Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGV 225
           VN+TV IAAEV KK G YD  +L GVT LD++R+NTFVAE+ G  P EV+VPV+GGH+GV
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGV 180
Query: 226 TILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
           TILPLLSQV P  S T  E+  LT RIQN GTEVVEAK G GSATLSM
Sbjct: 181 TILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSM 227

>pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Escherichia Coli Malate Dehydrogenase, Citrate And Nad At 1.9 Angstroms Resolution Length = 312

Iteration: 1
 Score =  269 bits (688), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 143/228 (62%), Positives = 169/228 (74%), Gaps = 4/228 (1%)
Query: 48  KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVV-NTPGVTADISHMDTNAVVRGFLGQ 105
           KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61
Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
                AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I+NP
Sbjct: 62  DA-TPALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120
Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGV 225
           VN+TV IAAEV KK G YD  +L GVT LD++R+NTFVAE+ G  P EV+VPV+GGH+GV
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGV 180
Query: 226 TILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
           TILPLLSQV P  S T  E+  LT RIQN GTEVVEAK G GSATLSM
Sbjct: 181 TILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSM 227

>pdb|1IB6|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase Length = 312

Iteration: 1
 Score =  265 bits (678), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 142/228 (62%), Positives = 168/228 (73%), Gaps = 4/228 (1%)
Query: 48  KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVV-NTPGVTADISHMDTNAVVRGFLGQ 105
           KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61
Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
                AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I+NP
Sbjct: 62  DA-TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120
Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGV 225
           VN+TV IAAEV KK G YD  +L GVT LD++ +NTFVAE+ G  P EV+VPV+GGH+GV
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIICSNTFVAELKGKQPGEVEVPVIGGHSGV 180
Query: 226 TILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
           TILPLLSQV P  S T  E+  LT RIQN GTEVVEAK G GSATLSM
Sbjct: 181 TILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSM 227

>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate Dehydrogenase From Vibrio Vulnificus Cmcp6 Length = 313

Iteration: 1
 Score =  260 bits (664), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 144/241 (59%), Positives = 172/241 (71%), Gaps = 8/241 (3%)
Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRG 101
           S   KVAV+GAAGGIGQ LA+L+K   P  S L LYD+   TPGV AD+SH+ T+  ++G
Sbjct: 1   SNAXKVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTHVSIKG 60
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
           + G+     AL G D+V+I AGV RKPG  R DLFN+NAGIVK+L E IA  CP A + +
Sbjct: 61  YAGEDPTP-ALEGADVVLISAGVARKPGXDRADLFNVNAGIVKSLAERIAVVCPNACIGI 119
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG 221
           I+NPVN+TVPIAAEV KK G YD ++L GVT LDV+R+ TFVAE+ G DP EV VPV+GG
Sbjct: 120 ITNPVNTTVPIAAEVLKKAGVYDKRKLFGVTTLDVIRSETFVAELKGQDPGEVRVPVIGG 179
Query: 222 HAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM----CRHM 277
           H+GVTILPLLSQV+     +  EI  LT RIQN GTEVVEAK G GSATLS     CR  
Sbjct: 180 HSGVTILPLLSQVE-GVEFSDEEIAALTKRIQNAGTEVVEAKAGGGSATLSXGQAACRFG 238
Query: 278 L 278
           L
Sbjct: 239 L 239

>pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate Dehydrogenase Length = 328

Iteration: 1
 Score = 99.4 bits (246), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 122/234 (52%), Gaps = 23/234 (9%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISH-MDTNAVVRGFLG 104
           K++++GA G IG  +A+L+    L  V +++D++     G   D++H M          G
Sbjct: 16  KISIIGA-GQIGSTIALLLGQKDLGDV-YMFDIIEGVPQGKALDLNHCMALIGSPAKIFG 73
Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
           +   E  L   D+VII AGVPRKP MTR DL  +NA IV ++ E + K CP A V  I+N
Sbjct: 74  ENNYE-YLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITN 132
Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHA 223
           P+++ V      FK+       ++ G++ +LD  R    ++  LG+ P +V   VVGGH 
Sbjct: 133 PLDAMV----YYFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSDVSAIVVGGH- 187
Query: 224 GVTILP----------LLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE-AKTGA 266
           G  ++P          LLS       +T ++I+ +  +   GG E+VE  KTG+
Sbjct: 188 GDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELLKTGS 241

>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 95.1 bits (235), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/230 (35%), Positives = 117/230 (50%), Gaps = 28/230 (12%)
Query: 47  FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISH------MDTNAV 98
            K+ V+GA G +G   A  +    L   L L DVV     G   D+         DT   
Sbjct: 1   MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVT 59
Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
                G     D     DIVII AG+PRKPGMTR+DL   NAGIVK + + I K     I
Sbjct: 60  -----GSNDYADTANS-DIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPI 113
Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPK-RLLGVT-MLDVVRANTFVAEVLGLDPREVDV 216
           + ++SNP++    +A   + + G   PK R++G+  +LD  R  +F+A  LG+  ++++ 
Sbjct: 114 IIVVSNPLDIMTHVA---WVRSGL--PKERVIGMAGVLDAARFRSFIAMELGVSMQDINA 168
Query: 217 PVVGGHAGVTILPLLSQVK----PSCSLTPTE-IDYLTDRIQNGGTEVVE 261
            V+GGH G  ++P++        P   L P E ID L +R +NGG E+VE
Sbjct: 169 CVLGGH-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVE 217

>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 94.0 bits (232), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 47  FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL--- 103
            K+ V+GA G +G   A  +    L   L L DVV        +   +T  V  G     
Sbjct: 1   MKITVIGA-GNVGATTAFRIADKKLARELVLLDVVEGIPQGKGLDMYETGPV--GLFDTK 57
Query: 104 --GQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
             G     D     DIVII AG+PRKPGMTR+DL   NAGIVK + + I K     I+ +
Sbjct: 58  ITGSNDYADTADS-DIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIV 116
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPK-RLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVV 219
           +SNP++    +A   + + G   PK R++G+  +LD  R  +F+A  LG+  ++++  V+
Sbjct: 117 VSNPLDIMTHVA---WVRSGL--PKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVL 171
Query: 220 GGHAGVTILPLLSQVK----PSCSLTPTE-IDYLTDRIQNGGTEVVE 261
           GGH G  ++P++        P   L P E ID L +R +NGG E+VE
Sbjct: 172 GGH-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVE 217

>pdb|3TL2|A Chain A, Crystal Structure Of Bacillus Anthracis Str. Ames Malate Dehydrogenase In Closed Conformation Length = 315

Iteration: 1
 Score = 94.0 bits (232), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 79/234 (33%), Positives = 129/234 (55%), Gaps = 22/234 (9%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV--VNTPGVTADISHMDTNAVVRGF--- 102
           KV+V+GA G  G   A L+    L  V+ L D+  +  P     +  ++ + V +GF   
Sbjct: 10  KVSVIGA-GFTGATTAFLLAQKELADVV-LVDIPQLENPTKGKALDMLEASPV-QGFDAN 66
Query: 103 -LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
            +G     D     D+V+I AG+ RKPGM+RDDL   N+ I+K++   IAK  P AI+ +
Sbjct: 67  IIGTSDYADTADS-DVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVV 125
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVG 220
           ++NPV++   +   VFK+ G +  +R++G + +LD  R  TF+A+ L L  +++   V+G
Sbjct: 126 LTNPVDA---MTYSVFKEAG-FPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFVLG 181
Query: 221 GHAGVTILPLLSQVK----PSCSLTPTE-IDYLTDRIQNGGTEVVEAKTGAGSA 269
           GH G  ++PL+        P  +L P E ++ + +R + GG E+V    G GSA
Sbjct: 182 GH-GDDMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIV-GLLGNGSA 233

>pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From Francisella Tularensis Subsp. Tularensis Schu S4 Length = 321

Iteration: 1
 Score = 94.0 bits (232), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 79/237 (33%), Positives = 118/237 (49%), Gaps = 29/237 (12%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT------NAVVRG 101
           K+ ++GA G IG  LA L  I  L  V+ L+D+         +  + T      +  VRG
Sbjct: 7   KITLVGA-GNIGGTLAHLALIKQLGDVV-LFDIAQGXPNGKALDLLQTCPIEGVDFKVRG 64
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
               + LE++    D+VI+ AGVPRKPG +RDDL  IN  + +T+ EGI   CP A V  
Sbjct: 65  TNDYKDLENS----DVVIVTAGVPRKPGXSRDDLLGINIKVXQTVGEGIKHNCPNAFVIC 120
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVG 220
           I+NP++    I     +K       +++G   +LD  R  TF+A+ L +  ++V   V G
Sbjct: 121 ITNPLD----IXVNXLQKFSGVPDNKIVGXAGVLDSARFRTFLADELNVSVQQVQAYVXG 176
Query: 221 GHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE-AKTGA 266
           GH G T +PL          L Q+     L    +D +  R ++GG E+V   KTG+
Sbjct: 177 GH-GDTXVPLTKXSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALLKTGS 232

>pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM Brucella Melitensis Length = 324

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 118/226 (52%), Gaps = 20/226 (8%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TP-GVTADISHMD-TNAVVRGFLG 104
           K+A++G+ G IG  LA L  +  L  V+ L+D+   TP G   DI+     +     F G
Sbjct: 9   KIALIGS-GMIGGTLAHLAGLKELGDVV-LFDIAEGTPQGKGLDIAESSPVDGFDAKFTG 66
Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
                 A+ G D+VI+ AGVPRKPGM+RDDL  IN  +++ +  GI K  P+A V  I+N
Sbjct: 67  ANDYA-AIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITN 125
Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGH-- 222
           P+++ V  A + F  +  +    + GV  LD  R   F++E   +   +V V V+GGH  
Sbjct: 126 PLDAMV-WALQKFSGLPAHKVVGMAGV--LDSARFRYFLSEEFNVSVEDVTVFVLGGHGD 182
Query: 223 --------AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVV 260
                   + V  +PL   VK   + +  ++D +  R ++GG E+V
Sbjct: 183 SMVPLARYSTVAGIPLPDLVKMGWT-SQDKLDKIIQRTRDGGAEIV 227

>pdb|1PZE|A Chain A, T.gondii Ldh1 Apo Form Length = 331

Iteration: 1
 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 105/200 (52%), Gaps = 24/200 (12%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHM----DTNAVVRG 101
           KVA++G+ G IG  +  L  +  L  V+ LYDVV     G   D+SH+    DTN  VR 
Sbjct: 11  KVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNVSVRA 68
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
              +   E ALTG D VI+ AG+ + PG      +R+DL   N+ I++ + + I K CPK
Sbjct: 69  ---EYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 125
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG--VTMLDVVRANTFVAEVLGLDPREV 214
             + +++NP++  V +  E      +  P  ++     MLD  R   +VA+ L + PR+V
Sbjct: 126 TFIIVVTNPLDCMVKVMCE-----ASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDV 180
Query: 215 DVPVVGGHAGVTILPLLSQV 234
              V+G H G  ++PL+  +
Sbjct: 181 QATVIGTH-GDCMVPLVRYI 199

>pdb|3OM9|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With Nad And Oxq Length = 329

Iteration: 1
 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 105/200 (52%), Gaps = 24/200 (12%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHM----DTNAVVRG 101
           KVA++G+ G IG  +  L  +  L  V+ LYDVV     G   D+SH+    DTN  VR 
Sbjct: 9   KVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNVSVRA 66
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
              +   E ALTG D VI+ AG+ + PG      +R+DL   N+ I++ + + I K CPK
Sbjct: 67  ---EYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 123
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG--VTMLDVVRANTFVAEVLGLDPREV 214
             + +++NP++  V +  E      +  P  ++     MLD  R   +VA+ L + PR+V
Sbjct: 124 TFIIVVTNPLDCMVKVMCE-----ASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDV 178
Query: 215 DVPVVGGHAGVTILPLLSQV 234
              V+G H G  ++PL+  +
Sbjct: 179 QATVIGTH-GDCMVPLVRYI 197

>pdb|1PZG|A Chain A, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6 Angstroms Length = 331

Iteration: 1
 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 105/200 (52%), Gaps = 24/200 (12%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHM----DTNAVVRG 101
           KVA++G+ G IG  +  L  +  L  V+ LYDVV     G   D+SH+    DTN  VR 
Sbjct: 11  KVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNVSVRA 68
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
              +   E ALTG D VI+ AG+ + PG      +R+DL   N+ I++ + + I K CPK
Sbjct: 69  ---EYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 125
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG--VTMLDVVRANTFVAEVLGLDPREV 214
             + +++NP++  V +  E      +  P  ++     MLD  R   +VA+ L + PR+V
Sbjct: 126 TFIIVVTNPLDCMVKVMXE-----ASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDV 180
Query: 215 DVPVVGGHAGVTILPLLSQV 234
              V+G H G  ++PL+  +
Sbjct: 181 QATVIGTH-GDCMVPLVRYI 199

>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 84.0 bits (206), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 114/229 (49%), Gaps = 28/229 (12%)
Query: 47  FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISH------MDTNAV 98
            K+ V+GA G +G   A  +    L   L L DVV     G   D+         DT   
Sbjct: 1   MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVT 59
Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
                G     D     DIV+I AG+PRKPGMTR+DL ++NAGIV+ +   I +     I
Sbjct: 60  -----GSNDYADTANS-DIVVITAGLPRKPGMTREDLLSMNAGIVREVTGRIMEHSKNPI 113
Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPK-RLLGVT-MLDVVRANTFVAEVLGLDPREVDV 216
           + ++SNP++    +A   ++K G   PK R++G+  +LD  R  +F+A  LG+  ++V  
Sbjct: 114 IVVVSNPLDIMTHVA---WQKSGL--PKERVIGMAGVLDSARFRSFIAMELGVSMQDVTA 168
Query: 217 PVVGGHAGVTILPLLSQVK----PSCSLTPTE-IDYLTDRIQNGGTEVV 260
            V+GGH G  ++P++        P   L   E I  L +R + GG E+V
Sbjct: 169 CVLGGH-GDAMVPVVKYTTVAGIPVADLISAERIAELVERTRTGGAEIV 216

>pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309

Iteration: 1
 Score = 84.0 bits (206), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 90/158 (56%), Gaps = 12/158 (7%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D++++ +G PRKPGM+R+DL  +NA I +      A   P A++ +++NP+++   +AAE
Sbjct: 72  DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 176 VFKKVGTYDPKRLLG-VTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL---- 230
               V  +  +R++G   +LD  R  TF+A   G+  ++V   ++GGH G  ++PL    
Sbjct: 132 ----VSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVKDVQAMLMGGH-GDEMVPLPRFS 186
Query: 231 -LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE-AKTGA 266
            +S +  S  + P  +  + +R + GG E+V   KTG+
Sbjct: 187 TISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLKTGS 224

>pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 90/158 (56%), Gaps = 12/158 (7%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D++++ +G PRKPGM+R+DL  +NA I +      A   P A++ +++NP+++   +AAE
Sbjct: 72  DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 176 VFKKVGTYDPKRLLG-VTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL---- 230
               V  +  +R++G   +LD  R  TF+A   G+  ++V   ++GGH G  ++PL    
Sbjct: 132 ----VSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVQDVQAMLMGGH-GDEMVPLPRFS 186
Query: 231 -LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE-AKTGA 266
            +S +  S  + P  +  + +R + GG E+V   KTG+
Sbjct: 187 TISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLKTGS 224

>pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 309

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 89/158 (56%), Gaps = 12/158 (7%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D++++ +G PRKPGM+R+DL  +NA I +      A   P A++ +++NP+++   +AAE
Sbjct: 72  DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 176 VFKKVGTYDPKRLLG-VTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL---- 230
               V  +  +R++G   +LD  R  TF+A   G+   +V   ++GGH G  ++PL    
Sbjct: 132 ----VSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGH-GDEMVPLPRFS 186
Query: 231 -LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE-AKTGA 266
            +S +  S  + P  +  + +R + GG E+V   KTG+
Sbjct: 187 TISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLKTGS 224

>pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By Introduction Of A Disulfide Bridge At The DimerDIMER Interface Length = 309

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 89/158 (56%), Gaps = 12/158 (7%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D++++ +G PRKPGM+R+DL  +NA I +      A   P A++ +++NP+++   +AAE
Sbjct: 72  DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 176 VFKKVGTYDPKRLLG-VTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL---- 230
               V  +  +R++G   +LD  R  TF+A   G+   +V   ++GGH G  ++PL    
Sbjct: 132 ----VSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGH-GDEMVPLPRFS 186
Query: 231 -LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE-AKTGA 266
            +S +  S  + P  +  + +R + GG E+V   KTG+
Sbjct: 187 CISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLKTGS 224

>pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh) Length = 319

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 19/165 (11%)
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 171
           L G D+VI+ AGVP+KPG TR  L   NA ++K +   ++K  P +IV +++NPV+    
Sbjct: 65  LKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD---- 120
Query: 172 IAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH-------- 222
           +    F K    DP+++ G  T+LD  R  T +A+  G  PR V V V+G H        
Sbjct: 121 VLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGDSEVPVW 180
Query: 223 AGVTI--LPL--LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAK 263
           +G  I  +PL  + QV   C      ++   ++ +    E++E K
Sbjct: 181 SGAMIGGIPLQNMCQVCQKCD--SKILENFAEKTKRAAYEIIERK 223

>pdb|2FM3|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From Cryptosporidium Parvum Complexed With Substrate (Pyruvic Acid) And Cofactor (B- Nicotinamide Adenine Dinucleotide) Length = 321

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 101/191 (52%), Gaps = 12/191 (6%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISH-MDTNAVVRGFLG 104
           K+AV+G+ G IG  +A ++  + L  V+ L+D+      G   DI+H M         +G
Sbjct: 6   KIAVIGS-GQIGGNIAYIVGKDNLADVV-LFDIAEGIPQGKALDITHSMVMFGSTSKVIG 63
Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
                D ++G D+VII A +P +P   R +L   NA I+ ++ EG+ K CP A V  I+N
Sbjct: 64  TNDYAD-ISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITN 122
Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHA 223
           P++    +    F+KV      ++ G+  +LD  R  TF+A+  G++  +V   V+GGH 
Sbjct: 123 PLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGGH- 177
Query: 224 GVTILPLLSQV 234
           G  ++P  S V
Sbjct: 178 GDGMVPATSSV 188

>pdb|3CZM|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With Nad And Oxq Length = 326

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 118/248 (47%), Gaps = 36/248 (14%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHM----DTNAVVRG 101
           K+A++G+ G IG  +  L  +  L  V+ L+DVV     G   D S      DTN  V  
Sbjct: 10  KIAMIGS-GMIGGTMGYLCVLRELADVV-LFDVVTGMPEGKALDDSQATSIADTNVSV-- 65
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
                Q E  + G D+VII AG+ + PG      +R+DL   NA I++ + +G+ K CP 
Sbjct: 66  -TSANQYEK-IAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPL 123
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG--VTMLDVVRANTFVAEVLGLDPREV 214
           A V +++NP++  V    E      +  PK ++     +LD  R   F+A+ L + PR++
Sbjct: 124 AFVIVVTNPLDCMVKCFHE-----ASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDI 178
Query: 215 DVPVVGGHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKT 264
              V+G H G  +LPL          L +      +T  ++  + +R +  G E+V    
Sbjct: 179 QATVIGTH-GDHMLPLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRL-L 236
Query: 265 GAGSATLS 272
           G GSA  +
Sbjct: 237 GQGSAYYA 244

>pdb|1SOV|A Chain A, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form Length = 328

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 118/247 (47%), Gaps = 34/247 (13%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHM----DTNAVVRG 101
           K+A++G+ G IG  +  L  +  L  V+ L+DVV     G   D S      DTN  V  
Sbjct: 10  KIAMIGS-GMIGGTMGYLCVLRELADVV-LFDVVTGMPEGKALDDSQATSIADTNVSV-- 65
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
                Q E  + G D+VII AG+ + PG      +R+DL   NA I++ + +G+ K CP 
Sbjct: 66  -TSANQYEK-IAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPL 123
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
           A V +++NP++  V    + F +        + G+  +LD  R   F+A+ L + PR++ 
Sbjct: 124 AFVIVVTNPLDCMV----KCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDIQ 179
Query: 216 VPVVGGHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTG 265
             V+G H G  +LPL          L +      +T  ++  + +R +  G E+V    G
Sbjct: 180 ATVIGTH-GDHMLPLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRL-LG 237
Query: 266 AGSATLS 272
            GSA  +
Sbjct: 238 QGSAYYA 244

>pdb|2EWD|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From Cryptosporidium Parvum Complexed With Substrate (Pyruvic Acid) And Cofactor Analog (3-Acetylpyridine Adenine Dinucleotide). Length = 317

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 101/191 (52%), Gaps = 12/191 (6%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISH-MDTNAVVRGFLG 104
           K+AV+G+ G IG  +A ++  + L  V+ L+D+      G   DI+H M         +G
Sbjct: 6   KIAVIGS-GQIGGNIAYIVGKDNLADVV-LFDIAEGIPQGKALDITHSMVMFGSTSKVIG 63
Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
                D ++G D+VII A +P +P   R +L   NA I+ ++ EG+ K CP A V  I+N
Sbjct: 64  TDDYAD-ISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITN 122
Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHA 223
           P++    +    F+KV      ++ G+  +LD  R  TF+A+  G++  +V   V+GGH 
Sbjct: 123 PLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGGH- 177
Query: 224 GVTILPLLSQV 234
           G  ++P  S V
Sbjct: 178 GDGMVPATSSV 188

>pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of LactateMALATE DEHYDROGENASE Length = 313

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 122/250 (48%), Gaps = 32/250 (12%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHL----YDVVNTPGVTADI------SHMDTNA 97
           KV ++GA+G +G   A+L+   P +  L L    + +    G+  DI      +  D N 
Sbjct: 2   KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61
Query: 98  VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA 157
            V      + ++++    D+VII +GVPRK GM+R DL   NA IV    + IA+ C   
Sbjct: 62  YVESDENLRIIDES----DVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTK 117
Query: 158 IVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDV 216
           I  +I+NPV+  +   A V  K   ++  ++ G+ T LD +R    +A+  G+   EV  
Sbjct: 118 IF-VITNPVD-VMTYKALVDSK---FERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRT 172
Query: 217 PVVGGHAGVTILPLLSQ-------VKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGA--- 266
            ++G H G +++PLLS        ++         ID + + ++  G +++  K G+   
Sbjct: 173 RIIGEH-GDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLKGGSEFG 231
Query: 267 -GSATLSMCR 275
             +A L++ R
Sbjct: 232 PAAAILNVVR 241

>pdb|2D4A|A Chain A, Structure Of The Malate Dehydrogenase From Aeropyrum Pernix Length = 308

Iteration: 1
 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 109/222 (49%), Gaps = 13/222 (5%)
Query: 49  VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTN-AVVRGFLGQQ 106
           + +LGA G +G   A+++ +     +L +      P G   D++H      V     G  
Sbjct: 2   ITILGA-GKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSN 60
Query: 107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 166
             ED + G DIV++ AG+ RKPGMTR+ L   NA  +  L E I      AIV + +NPV
Sbjct: 61  SYED-MRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNPV 119
Query: 167 NSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGV 225
           ++   +   ++KK G +  +R++G + +LD  R   ++++ LG+  + V+  V+G H   
Sbjct: 120 DAMTYV---MYKKTG-FPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGMHGQK 175
Query: 226 TI-LPLLSQVKP---SCSLTPTEIDYLTDRIQNGGTEVVEAK 263
              +P LS V        ++  EI+ +     N G ++ E +
Sbjct: 176 MFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITELR 217

>pdb|1T24|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid Length = 322

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 112/235 (47%), Gaps = 25/235 (10%)
Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
           +P  K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A    
Sbjct: 2   APKAKIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNC 59
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
            +      D L G D+VI+ AG  + PG       RDDL  +N  I+  +   I K CP 
Sbjct: 60  KVSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPN 119
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
           A + +++NPV+  V    ++  +       +++G+  +LD  R   ++++ L + PR+V+
Sbjct: 120 AFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN 175
Query: 216 VPVVGGHAGVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVV 260
             +VG H    +L          PL   +     ++  E++ + DR  N   E+V
Sbjct: 176 AHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIV 229

>pdb|1XIV|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With 2-({4- Chloro-[hydroxy(Methoxy)methyl]cyclohexyl}amino)ethane- 1,1,2-Triol Length = 323

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 112/235 (47%), Gaps = 25/235 (10%)
Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
           +P  K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A    
Sbjct: 1   APKAKIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNC 58
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
            +      D L G D+VI+ AG  + PG       RDDL  +N  I+  +   I K CP 
Sbjct: 59  KVSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPN 118
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
           A + +++NPV+  V    ++  +       +++G+  +LD  R   ++++ L + PR+V+
Sbjct: 119 AFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN 174
Query: 216 VPVVGGHAGVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVV 260
             +VG H    +L          PL   +     ++  E++ + DR  N   E+V
Sbjct: 175 AHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIV 228

>pdb|1U4O|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With 2,6- Naphthalenedicarboxylic Acid Length = 321

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 112/235 (47%), Gaps = 25/235 (10%)
Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
           +P  K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A    
Sbjct: 1   APKAKIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNC 58
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
            +      D L G D+VI+ AG  + PG       RDDL  +N  I+  +   I K CP 
Sbjct: 59  KVSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPN 118
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
           A + +++NPV+  V    ++  +       +++G+  +LD  R   ++++ L + PR+V+
Sbjct: 119 AFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN 174
Query: 216 VPVVGGHAGVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVV 260
             +VG H    +L          PL   +     ++  E++ + DR  N   E+V
Sbjct: 175 AHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIV 228

>pdb|1CEQ|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of Plasmodium Falciparum Lactate Dehydrogenase Length = 316

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 112/235 (47%), Gaps = 25/235 (10%)
Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
           +P  K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A    
Sbjct: 2   APKAKIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNC 59
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
            +      D L G D+VI+ AG  + PG       RDDL  +N  I+  +   I K CP 
Sbjct: 60  KVSGSNTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPN 119
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
           A + +++NPV+  V    ++  +       +++G+  +LD  R   ++++ L + PR+V+
Sbjct: 120 AFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN 175
Query: 216 VPVVGGHAGVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVV 260
             +VG H    +L          PL   +     ++  E++ + DR  N   E+V
Sbjct: 176 AHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIV 229

>pdb|1T2E|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase S245a, A327p Mutant Complexed With Nadh And Oxamate Length = 322

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 112/235 (47%), Gaps = 25/235 (10%)
Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
           +P  K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A    
Sbjct: 2   APKAKIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNC 59
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
            +      D L G D+VI+ AG  + PG       RDDL  +N  I+  +   I K CP 
Sbjct: 60  KVSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPN 119
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
           A + +++NPV+    +  ++  +       +++G+  +LD  R   ++++ L + PR+V+
Sbjct: 120 AFIIVVTNPVD----VMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN 175
Query: 216 VPVVGGHAGVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVV 260
             +VG H    +L          PL   +     ++  E++ + DR  N   E+V
Sbjct: 176 AHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIV 229

>pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum Cth-1135 Length = 318

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 118/256 (46%), Gaps = 36/256 (14%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRG--FL 103
           KVA++GA G +G   A  M +    + L L DV      G   DI+H        G  F+
Sbjct: 9   KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINH--------GLPFM 59
Query: 104 GQQQLE----DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV 159
           GQ  L       +   D++++ AG  RKPG TR DL   N  I K + + I K     ++
Sbjct: 60  GQMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVI 119
Query: 160 NLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPV 218
            ++SNPV+    I   + +K       +++G  T+LD +R    ++E LG+D + V   +
Sbjct: 120 LVVSNPVD----IITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYI 175
Query: 219 VGGHAGVTILPLLSQVK------------PSCSLTPTEIDYLTDRIQNGGTEVVEAKTGA 266
           +G H G + LPL S               P C+ T  +   + + ++  G  +++ K GA
Sbjct: 176 IGEH-GDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIKNK-GA 233
Query: 267 GSATLSMCRHMLLPSL 282
               +++  + ++ +L
Sbjct: 234 TYYGIAVSINTIVETL 249

>pdb|2A92|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Plasmodium Vivax: Complex With Nadh Length = 321

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 110/228 (48%), Gaps = 24/228 (10%)
Query: 51  VLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRGFLGQQQL 108
           VL  +G IG  +A L+    L  V+ ++DVV N P G   D SH +  A     +     
Sbjct: 7   VLVGSGMIGGVMATLIVQKNLGDVV-MFDVVKNMPQGKALDTSHSNVMAYSNCKVTGSNS 65
Query: 109 EDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163
            D L G D+VI+ AG  + PG       RDDL  +N  I+  +   I   CP A + +++
Sbjct: 66  YDDLKGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNLCPNAFIIVVT 125
Query: 164 NPVNSTVPIAAEVFKKVGTYDPK-RLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGG 221
           NPV+  V +   +F+  G   PK +++G+  +LD  R   ++++ L + PR+V+  +VG 
Sbjct: 126 NPVDVMVQL---LFEHSGV--PKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNALIVGA 180
Query: 222 HAGVTILPL---------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVV 260
           H    +L           L +   +  +T  E++ + DR  N   E+V
Sbjct: 181 HGNKMVLLKRYITVGGIPLQEFINNKKITDEEVEGIFDRTVNTALEIV 228

>pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From Salinibacter Ruber Length = 314

Iteration: 1
 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 12/159 (7%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D+ II AG+PR PGM+RDDL   N  IV  + E   +  P + + +++NP++    +A E
Sbjct: 71  DVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLDVMTYVAYE 130
Query: 176 VFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 234
                  +   R++G+  +LD  R  +F+AE L +  R+V   ++GGH G T++PL    
Sbjct: 131 ----ASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMGGH-GDTMVPLPRYT 185
Query: 235 KPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
                  P  ID    RI+    E+VE   GAG   + +
Sbjct: 186 TVGGIPVPQLIDDA--RIE----EIVERTKGAGGEIVDL 218

>pdb|1OC4|A Chain A, Lactate Dehydrogenase From Plasmodium Berghei Length = 322

Iteration: 1
 Score = 70.5 bits (171), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 110/235 (46%), Gaps = 23/235 (9%)
Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
           +P  K+ ++G+ G IG  +A L+    L  V+ ++D+V N P G   D SH +  A    
Sbjct: 2   APKAKIVLVGS-GMIGGVMATLIVQKNLGDVV-MFDIVKNMPHGKALDTSHTNVMAYSNC 59
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
            +      D L   D+VI+ AG  + PG       RDDL  +N  I+  +   I   CP 
Sbjct: 60  KVSGSNTYDDLKDADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNNCPN 119
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
           A + +++NPV+  V    ++  +       +++G+  +LD  R   ++++ L + PR+V+
Sbjct: 120 AFIIVVTNPVDVMV----QLLHQHSGVPKNKIVGLGGVLDTSRLKYYISQKLNVCPRDVN 175
Query: 216 VPVVGGHAGVTILPL---------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE 261
             +VG H    +L           L +   +  +T  E+D + DR  N   E+V 
Sbjct: 176 AHIVGAHGNKMVLLKRYITVGGIPLQEFINNKKITDQELDAIFDRTINTALEIVN 230

>pdb|1CET|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of Plasmodium Falciparum Lactate Dehydrogenase. Length = 316

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 111/235 (47%), Gaps = 25/235 (10%)
Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
           +P  K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A    
Sbjct: 2   APKAKIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNC 59
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
            +      D L G D+VI+ AG  + PG       R DL  +N  I+  +   I K CP 
Sbjct: 60  KVSGSNTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRLDLLPLNNKIMIEIGGHIKKNCPN 119
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
           A + +++NPV+  V    ++  +       +++G+  +LD  R   ++++ L + PR+V+
Sbjct: 120 AFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN 175
Query: 216 VPVVGGHAGVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVV 260
             +VG H    +L          PL   +     ++  E++ + DR  N   E+V
Sbjct: 176 AHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIV 229

>pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Porphyromonas Gingivalis Length = 343

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 99/230 (43%), Gaps = 21/230 (9%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYD--VVNTPGVTADISHMDTNAVVRGFLGQ 105
           K+ ++GAAG IG  +A    +  L   L LYD   V   GV  +I H     +   F   
Sbjct: 10  KLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTF--T 67
Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI-VNLISN 164
             +++ALT    ++   G PRK GMTR+DL   NA I   L + I   CP    V +I N
Sbjct: 68  SDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFN 127
Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREV-DVPVVGGH- 222
           P + T  +   ++  +    P ++  +  LD  R  + +A+  G+    V +    GGH 
Sbjct: 128 PADIT-GLVTLIYSGL---KPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGHG 183
Query: 223 ---------AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAK 263
                    A V   PL   +     LT  +   L  R+  GG  +++ +
Sbjct: 184 EQMAVFASTAKVNGTPLTDLIGTD-KLTNEQWAELKQRVVKGGANIIKLR 232

>pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei Length = 326

Iteration: 1
 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 6/119 (5%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D+V+I AG P+KPG TR DL N N  I+K++ + I       I  + +NPV+    I   
Sbjct: 78  DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVD----ILTY 133
Query: 176 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ 233
              K+  +   R++G  T LD  R    +AE++ +D R V   ++G H G T  P+ S 
Sbjct: 134 ATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEH-GDTEFPVWSH 191

>pdb|4A73|A Chain A, Single Point Mutant Of Thermus Thermophilus Lactate Dehydrogenase Length = 310

Iteration: 1
 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 86/183 (46%), Gaps = 20/183 (10%)
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 171
           L G   V++ AGV ++PG TR  L + NA +   +   + +  P+A++ + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD---- 120
Query: 172 IAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL-- 228
           +  +V  ++    P R++G  T+LD  R    +AE L + P+ V   V+G H    +L  
Sbjct: 121 VMTQVAYRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 229 --------PLLSQVKPS-CSLTPTEIDYLTDRIQNGGTEVVEAK----TGAGSATLSMCR 275
                   PLL   +    +L+P +   + + ++     ++E K     G G+    + R
Sbjct: 181 SSAQVGGVPLLEFAEARGAALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVR 240
Query: 276 HML 278
            +L
Sbjct: 241 AIL 243

>pdb|2E37|A Chain A, Structure Of Tt0471 Protein From Thermus Thermophilus Length = 310

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 86/183 (46%), Gaps = 20/183 (10%)
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 171
           L G   V++ AGV ++PG TR  L + NA +   +   + +  P+A++ + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD---- 120
Query: 172 IAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL-- 228
           +  +V  ++    P R++G  T+LD  R    +AE L + P+ V   V+G H    +L  
Sbjct: 121 VXTQVAYRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 229 --------PLLSQVKPSC-SLTPTEIDYLTDRIQNGGTEVVEAK----TGAGSATLSMCR 275
                   PLL   +    +L+P +   + + ++     ++E K     G G+    + R
Sbjct: 181 SSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVR 240
Query: 276 HML 278
            +L
Sbjct: 241 AIL 243

>pdb|2V6M|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus Thermophilus Hb8 (Apo Form) Length = 310

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 86/183 (46%), Gaps = 20/183 (10%)
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 171
           L G   V++ AGV ++PG TR  L + NA +   +   + +  P+A++ + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD---- 120
Query: 172 IAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL-- 228
           +  +V  ++    P R++G  T+LD  R    +AE L + P+ V   V+G H    +L  
Sbjct: 121 VMTQVAYRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 229 --------PLLSQVKPSC-SLTPTEIDYLTDRIQNGGTEVVEAK----TGAGSATLSMCR 275
                   PLL   +    +L+P +   + + ++     ++E K     G G+    + R
Sbjct: 181 SSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVR 240
Query: 276 HML 278
            +L
Sbjct: 241 AIL 243

>pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase Length = 326

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 17/160 (10%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D+V+I AG P+KPG TR DL N N  I+K++ + I       I  + +NPV+    I   
Sbjct: 78  DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVD----ILTY 133
Query: 176 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ- 233
              K+  +   R++G  T LD  R    +A+++ +D R V   ++G H G T  P+ S  
Sbjct: 134 ATWKLSGFPKNRVVGSGTSLDTARFRQSIAKMVNVDARSVHAYIMGEH-GDTEFPVWSHA 192
Query: 234 ----------VKPSCSLTPTEIDYLTDRIQNGGTEVVEAK 263
                     VK    +   ++  + + ++N   E+++ K
Sbjct: 193 NIGGVTIAEWVKAHPEIKEDKLVKMFEDVRNKAYEIIKLK 232

>pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms Resolution Length = 325

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 6/119 (5%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D+V+I AG P++PG TR DL N N  I+K++ + I       I  + +NPV+    I   
Sbjct: 77  DLVVITAGAPKQPGETRLDLVNKNLKILKSIVDPIVDSGFNLIFLVAANPVD----ILTY 132
Query: 176 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ 233
              K+  +   R++G  T LD  R    +AE++ +D R V   ++G H G T  P+ S 
Sbjct: 133 ATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEH-GDTEFPVWSH 190

>pdb|2XXB|A Chain A, Penta-Mutant Of Thermus Thermophilus Lactate Dehydrogenase, Complex With Amp Length = 310

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 20/183 (10%)
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 171
           L G   V++ AGV ++PG TR  L + NA +   +   + +  P+A++ + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD---- 120
Query: 172 IAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL-- 228
           +  +V   +    P R++G  T+LD  R    +AE L + P+ V   V+G H    +L  
Sbjct: 121 VMTQVAYALSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 229 --------PLLSQVKPSC-SLTPTEIDYLTDRIQNGGTEVVEAK----TGAGSATLSMCR 275
                   PLL   +    +L+P +   + + ++     ++E K     G G+    + R
Sbjct: 181 SSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVR 240
Query: 276 HML 278
            +L
Sbjct: 241 AIL 243

>pdb|4H7P|A Chain A, Crystal Structure Of A Putative Cytosolic Malate Dehydrogenase From Leishmania Major Friedlin Length = 345

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 92/223 (41%), Gaps = 39/223 (17%)
Query: 26  IEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG 85
           +E ++ G G M           KVAV GAAG IG  L  L+    L+           P 
Sbjct: 12  LEAQTQGPGSMSA--------VKVAVTGAAGQIGYALVPLIARGALLG----------PT 53
Query: 86  VTADISHMDTNAVVRGFLG-QQQLED-----------------ALTGMDIVIIPAGVPRK 127
              ++  +D    ++   G + +LED                 A  G+ I I+    PRK
Sbjct: 54  TPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFDGVAIAIMCGAFPRK 113
Query: 128 PGMTRDDLFNINAGIVKTLCEGIAK-CCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK 186
            GM R DL  +NA I K   E IA        V ++ NP N+   I  +  +  G  +P+
Sbjct: 114 AGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALILLKSAQ--GKLNPR 171
Query: 187 RLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILP 229
            +  +T LD  RA + +A   G+   +V   ++ G+   T +P
Sbjct: 172 HVTAMTRLDHNRALSLLARKAGVPVSQVRNVIIWGNHSSTQVP 214

>pdb|1EZ4|A Chain A, Crystal Structure Of Non-Allosteric L-Lactate Dehydrogenase From Lactobacillus Pentosus At 2.3 Angstrom Resolution Length = 318

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 105/252 (41%), Gaps = 26/252 (10%)
Query: 45  PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRG 101
           P  +  VL   G +G   A  M    +     + DVV   T G   D+       A  + 
Sbjct: 3   PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKI 62
Query: 102 FLGQ-QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN 160
           + G+    +DA    D+V+I AG P+KPG +R DL N N  I+ ++ + +       I  
Sbjct: 63  YSGEYSDCKDA----DLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFL 118
Query: 161 LISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVV 219
           + +NPV+    I      K   +  +R++G  T LD  R    + +   +DPR VD  ++
Sbjct: 119 VAANPVD----ILTYATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIM 174
Query: 220 GGHAGVTILPL---------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAK----TGA 266
           G H                 +  V     ++  ++  L D ++N   +++  K     G 
Sbjct: 175 GEHGDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIINLKGATFYGI 234
Query: 267 GSATLSMCRHML 278
           G+A + + + +L
Sbjct: 235 GTALMRISKAIL 246

>pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis Complexed With Fbp And Nad+ Length = 326

Iteration: 1
 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 99/233 (42%), Gaps = 27/233 (11%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNA---VVRGF 102
           KVA++GA G +G   A  +    +   L + DV      G   D++H    A   V   +
Sbjct: 7   KVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSY 65
Query: 103 LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 162
              +  +DA    DIV I AG  +KPG TR +L   N  I K +   +       I  + 
Sbjct: 66  GTYEDCKDA----DIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVA 121
Query: 163 SNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGG 221
           +NPV+    I      K      +R++G  T LD  R    ++E  G  P+ V   ++G 
Sbjct: 122 TNPVD----ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVHAHIIGE 177
Query: 222 HAGVTILPLLSQ-----------VKPSCSLTPTEIDYLTDRIQNGGTEVVEAK 263
           H G T LP+ S            V+ + +    E+D + D ++N    ++E K
Sbjct: 178 H-GDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKK 229

>pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis With H171c Mutation Length = 326

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 99/233 (42%), Gaps = 27/233 (11%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNA---VVRGF 102
           KVA++GA G +G   A  +    +   L + DV      G   D++H    A   V   +
Sbjct: 7   KVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSY 65
Query: 103 LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 162
              +  +DA    DIV I AG  +KPG TR +L   N  I K +   +       I  + 
Sbjct: 66  GTYEDCKDA----DIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVA 121
Query: 163 SNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGG 221
           +NPV+    I      K      +R++G  T LD  R    ++E  G  P+ V   ++G 
Sbjct: 122 TNPVD----ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHIIGE 177
Query: 222 HAGVTILPLLSQ-----------VKPSCSLTPTEIDYLTDRIQNGGTEVVEAK 263
           H G T LP+ S            V+ + +    E+D + D ++N    ++E K
Sbjct: 178 H-GDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKK 229

>pdb|2HLP|A Chain A, Crystal Structure Of The E267r Mutant Of A Halophilic Malate Dehydrogenase In The Apo Form Length = 303

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 17/204 (8%)
Query: 82  NTPGVTADISH---MDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNI 138
           +T G  AD +H    D+N  VR    Q   ED   G D+V+I AG+PR+PG TR DL   
Sbjct: 40  DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 94
Query: 139 NAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVV 197
           NA I++ +   + +     I    SNPV+    +      + G    ++++G    LD  
Sbjct: 95  NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 150
Query: 198 RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS---LTPTEIDYLTDRIQN 254
           R    ++E      + V+  ++G H G   +P+ S+V+   +    +  E + L   +Q 
Sbjct: 151 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDLQE 209
Query: 255 GGTEVVEAKTGAGSATLSMCRHML 278
              +V+E K            HM+
Sbjct: 210 SAMDVIERKGATEWGPARGVAHMV 233

>pdb|3D0O|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Staphylococcus Aureus Length = 317

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 6/119 (5%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D+V+I AG  +KPG TR DL + N  I K++   +       I  + +NPV+    I A 
Sbjct: 76  DLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVD----ILAY 131
Query: 176 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ 233
              K      +R++G  T+LD  R    ++E   + PR VD  ++G H G T LP+ S 
Sbjct: 132 ATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEH-GDTELPVWSH 189

>pdb|2J5K|A Chain A, 2.0 A Resolution Structure Of The Wild Type Malate Dehydrogenase From Haloarcula Marismortui (radiation Damage Series) Length = 304

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 17/204 (8%)
Query: 82  NTPGVTADISH---MDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNI 138
           +T G  AD +H    D+N  VR    Q   ED   G D+V+I AG+PR+PG TR DL   
Sbjct: 41  DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 95
Query: 139 NAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVV 197
           NA I++ +   + +     I    SNPV+    +      + G    ++++G    LD  
Sbjct: 96  NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 151
Query: 198 RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS---LTPTEIDYLTDRIQN 254
           R    ++E      + V+  ++G H G   +P+ S+V+   +    +  E + L   +Q 
Sbjct: 152 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDLQE 210
Query: 255 GGTEVVEAKTGAGSATLSMCRHML 278
              +V+E K            HM+
Sbjct: 211 SAMDVIERKGATEWGPARGVAHMV 234

>pdb|1HLP|A Chain A, Structural Features Stabilizing Halophilic Malate Dehydrogenase From An Archaebacterium Length = 303

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 17/204 (8%)
Query: 82  NTPGVTADISH---MDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNI 138
           +T G  AD +H    D+N  VR    Q   ED   G D+V+I AG+PR+PG TR DL   
Sbjct: 40  DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 94
Query: 139 NAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVV 197
           NA I++ +   + +     I    SNPV+    +      + G    ++++G    LD  
Sbjct: 95  NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 150
Query: 198 RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS---LTPTEIDYLTDRIQN 254
           R    ++E      + V+  ++G H G   +P+ S+V+   +    +  E + L   +Q 
Sbjct: 151 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDLQE 209
Query: 255 GGTEVVEAKTGAGSATLSMCRHML 278
              +V+E K            HM+
Sbjct: 210 SAMDVIERKGATEWGPARGVAHMV 233

>pdb|3H3J|A Chain A, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r) Fro Staphylococcus Aureus Complexed With Nad And Pyruvate Length = 317

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 6/119 (5%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D+V+I AG  +KPG TR DL + N  I K++   +       I  + +NPV+    I A 
Sbjct: 76  DLVVICAGARQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVD----ILAY 131
Query: 176 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ 233
              K      +R++G  T+LD  R    ++E   + PR VD  ++G H G T LP+ S 
Sbjct: 132 ATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEH-GDTELPVWSH 189

>pdb|2X0I|A Chain A, 2.9 A Resolution Structure Of Malate Dehydrogenase From Archaeoglobus Fulgidus In Complex With Nadh Length = 294

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 8/85 (9%)
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 171
           L G +I+++ AG+ RKPGMTR DL + NAGI+K + + I +  P++ + +++NP++    
Sbjct: 67  LKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTY 126
Query: 172 IAA--------EVFKKVGTYDPKRL 188
           I          EVF      D +RL
Sbjct: 127 IMWKESGKPRNEVFGMGNQLDSQRL 151

>pdb|2X0R|A Chain A, R207s,R292s Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (Holo Form) Length = 304

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 90/204 (44%), Gaps = 17/204 (8%)
Query: 82  NTPGVTADISH---MDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNI 138
           +T G  AD +H    D+N  VR    Q   ED   G D+V+I AG+PR+PG TR DL   
Sbjct: 41  DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 95
Query: 139 NAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVV 197
           NA I++ +   + +     I    SNPV+    +      + G    ++++G    LD  
Sbjct: 96  NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 151
Query: 198 RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS---LTPTEIDYLTDRIQN 254
           R    ++E      + V+  ++G H G   +P+ S+V    +    +  E + L   +Q 
Sbjct: 152 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQE 210
Query: 255 GGTEVVEAKTGAGSATLSMCRHML 278
              +V+E K            HM+
Sbjct: 211 SAMDVIERKGATEWGPARGVAHMV 234

>pdb|1O6Z|A Chain A, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (holo Form) Length = 303

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 90/204 (44%), Gaps = 17/204 (8%)
Query: 82  NTPGVTADISH---MDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNI 138
           +T G  AD +H    D+N  VR    Q   ED   G D+V+I AG+PR+PG TR DL   
Sbjct: 40  DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 94
Query: 139 NAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVV 197
           NA I++ +   + +     I    SNPV+    +      + G    ++++G    LD  
Sbjct: 95  NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 150
Query: 198 RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS---LTPTEIDYLTDRIQN 254
           R    ++E      + V+  ++G H G   +P+ S+V    +    +  E + L   +Q 
Sbjct: 151 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQE 209
Query: 255 GGTEVVEAKTGAGSATLSMCRHML 278
              +V+E K            HM+
Sbjct: 210 SAMDVIERKGATEWGPARGVAHMV 233

>pdb|1LLD|A Chain A, Molecular Basis Of Allosteric Activation Of Bacterial L-Lactate Dehydrogenase Length = 319

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 89/202 (44%), Gaps = 14/202 (6%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
           K+AV+GA G +G  LA       +   + L D+     V A++  M   +     +    
Sbjct: 9   KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKER-VEAEVLDMQHGSSFYPTVSIDG 66
Query: 108 LED--ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
            +D       D+V+I AG  +KPG +R +L      I+K +   + K  P AI  LI+NP
Sbjct: 67  SDDPEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNP 126
Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
           V+    IA  V +K+      ++ G  T LD  R    +A+  G++ + V   + G H G
Sbjct: 127 VD----IATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNVHAYIAGEH-G 181
Query: 225 VTILPLLSQVK----PSCSLTP 242
            + +PL         P    TP
Sbjct: 182 DSEVPLWESATIGGVPMSDWTP 203

>pdb|1LDN|A Chain A, Structure Of A Ternary Complex Of An Allosteric Lactate Dehydrogenase From Bacillus Stearothermophilus At 2.5 Angstroms Resolution Length = 316

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 6/119 (5%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D+V+I AG  +KPG TR DL + N  I +++ E +     + +  + +NPV+    I   
Sbjct: 76  DLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD----ILTY 131
Query: 176 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ 233
              K      +R++G  T+LD  R    + E   + P+ V   ++G H G T LP+ SQ
Sbjct: 132 ATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH-GDTELPVWSQ 189

>pdb|1LDB|A Chain A, Structure Determination And Refinement Of Bacillus Stearothermophilus Lactate Dehydrogenase Length = 317

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 6/119 (5%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D+V+I AG  +KPG TR DL + N  I +++ E +     + +  + +NPV+    I   
Sbjct: 76  DLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD----ILTY 131
Query: 176 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ 233
              K      +R++G  T+LD  R    + E   + P+ V   ++G H G T LP+ SQ
Sbjct: 132 ATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH-GDTELPVWSQ 189

>pdb|4MDH|A Chain A, Refined Crystal Structure Of Cytoplasmic Malate Dehydrogenase At 2.5-Angstroms Resolution Length = 334

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 109/245 (44%), Gaps = 37/245 (15%)
Query: 53  GAAGGIGQPLAM-LMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDA 111
           G+  G  QP+ + L+ I P++ VL         GV  ++       +++  +   + E A
Sbjct: 27  GSVFGKDQPIILVLLDITPMMGVLD--------GVLMELQDC-ALPLLKDVIATDKEEIA 77
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIA--KCCPKAI-VNLISNPVNS 168
              +D+ I+   +PR+ GM R DL   N  I K  C+G A  K   K++ V ++ NP N+
Sbjct: 78  FKDLDVAILVGSMPRRDGMERKDLLKANVKIFK--CQGAALDKYAKKSVKVIVVGNPANT 135
Query: 169 TVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL 228
               A+   K   +   +    +T LD  RA   +A  LG+   +V   ++ G+   T  
Sbjct: 136 NCLTAS---KSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQY 192
Query: 229 PLLSQVKPSCSLTPTEI--------------DYLTDRIQNGGTEVVEAK--TGAGSATLS 272
           P ++  K    L   E+              +++T  +Q  G  V++A+  + A SA  +
Sbjct: 193 PDVNHAK--VKLQAKEVGVYEAVKDDSWLKGEFIT-TVQQRGAAVIKARKLSSAMSAAKA 249
Query: 273 MCRHM 277
           +C H+
Sbjct: 250 ICDHV 254

>pdb|5MDH|A Chain A, Crystal Structure Of Ternary Complex Of Porcine Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And Tnad At 2.4 Angstroms Resolution Length = 333

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 109/245 (44%), Gaps = 37/245 (15%)
Query: 53  GAAGGIGQPLAM-LMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDA 111
           G+  G  QP+ + L+ I P++ VL         GV  ++       +++  +   + E A
Sbjct: 26  GSVFGKDQPIILVLLDITPMMGVLD--------GVLMELQDC-ALPLLKDVIATDKEEIA 76
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIA--KCCPKAI-VNLISNPVNS 168
              +D+ I+   +PR+ GM R DL   N  I K  C+G A  K   K++ V ++ NP N+
Sbjct: 77  FKDLDVAILVGSMPRRDGMERKDLLKANVKIFK--CQGAALDKYAKKSVKVIVVGNPANT 134
Query: 169 TVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL 228
               A+   K   +   +    +T LD  RA   +A  LG+   +V   ++ G+   T  
Sbjct: 135 NCLTAS---KSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQY 191
Query: 229 PLLSQVKPSCSLTPTEI--------------DYLTDRIQNGGTEVVEAK--TGAGSATLS 272
           P ++  K    L   E+              +++T  +Q  G  V++A+  + A SA  +
Sbjct: 192 PDVNHAK--VKLQAKEVGVYEAVKDDSWLKGEFIT-TVQQRGAAVIKARKLSSAMSAAKA 248
Query: 273 MCRHM 277
           +C H+
Sbjct: 249 ICDHV 253

>pdb|1BMD|A Chain A, Determinants Of Protein Thermostability Observed In The 1.9 Angstroms Crystal Structure Of Malate Dehydrogenase From The Thermophilic Bacterium Thermus Flavus Length = 327

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 86/213 (40%), Gaps = 22/213 (10%)
Query: 48  KVAVLGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTN 96
           +VAV GAAG IG  L        ML K  P+  +L L ++        GV  ++      
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPV--ILQLLEIPQAMKALEGVVMELEDC-AF 62
Query: 97  AVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPK 156
            ++ G       + A    D  ++    PRK GM R DL  +N  I       +A+   K
Sbjct: 63  PLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKK 122
Query: 157 AI-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD 215
            + V ++ NP N+   IA   +K     +P+    +T LD  RA   +A+  G     + 
Sbjct: 123 DVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIR 179
Query: 216 VPVVGGHAGVTILPLLSQV----KPSCSLTPTE 244
              V G+   T+ P L       +P+  L   E
Sbjct: 180 RMTVWGNHSSTMFPDLFHAEVDGRPALELVDME 212

>pdb|1IZ9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Thermus Thermophilus Hb8 Length = 327

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 84/212 (39%), Gaps = 20/212 (9%)
Query: 48  KVAVLGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR 100
           +VAV GAAG IG  L        ML K  P+  +L L ++         +     +    
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPV--ILQLLEIPQAMKALEGVVMELEDCAFP 63
Query: 101 GFLGQQQLED---ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA 157
              G +  +D   A    D  ++    PRK GM R DL  +N  I       +A+   K 
Sbjct: 64  LLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKD 123
Query: 158 I-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDV 216
           + V ++ NP N+   IA   +K     +P+    +T LD  RA   +A+  G     +  
Sbjct: 124 VKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRR 180
Query: 217 PVVGGHAGVTILPLLSQV----KPSCSLTPTE 244
             V G+   T+ P L       +P+  L   E
Sbjct: 181 MTVWGNHSSTMFPDLFHAEVDGRPALELVDME 212

>pdb|2V6B|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Deinococcus Radiodurans (Apo Form) Length = 304

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 11/130 (8%)
Query: 104 GQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163
           G  +L DA     +VI+ AG  +KPG +R DL   NA I + L   I +  P A++ + S
Sbjct: 61  GHSELADA----QVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTS 116
Query: 164 NPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH 222
           NPV+    +A ++         + ++G  T+LD  R    +A+  G+D       V+G H
Sbjct: 117 NPVDLLTDLATQLAPG------QPVIGSGTVLDSARFRHLMAQHAGVDGTHAHGYVLGEH 170
Query: 223 AGVTILPLLS 232
               +L   S
Sbjct: 171 GDSEVLAWSS 180

>pdb|1WZE|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of Malate Dehydrogenase From Thermus Flavus Length = 327

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 86/211 (40%), Gaps = 18/211 (8%)
Query: 48  KVAVLGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNA--V 98
           +VAV GAAG IG  L        ML K  P++  L L    +   +   +  ++  A  +
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQL-LGSERSFQALEGVVMELEDCAFPL 64
Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
           + G       + A    D  ++    PRK GM R DL  +N  I       +A+   K +
Sbjct: 65  LAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDV 124
Query: 159 -VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVP 217
            V ++ NP N+   IA   +K     +P+    +T LD  RA   +A+  G     +   
Sbjct: 125 KVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 218 VVGGHAGVTILPLLSQV----KPSCSLTPTE 244
            V G+   T+ P L       +P+  L   E
Sbjct: 182 TVWGNHSSTMFPDLFHAEVDGRPALELVDME 212

>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary Complex With Nadh And Oxamate Length = 331

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 98/224 (43%), Gaps = 19/224 (8%)
Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNA 97
           +P  K+ V+G  G +G   A+ + +  L   L L DV+     G   D+ H    + T  
Sbjct: 17  TPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLRTPK 75
Query: 98  VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA 157
           +V G     +  +      +VII AG  ++ G +R +L   N  I K +   + K  P  
Sbjct: 76  IVSG-----KDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNC 130
Query: 158 IVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDV 216
            + ++SNPV+    I   V  K+  +   R++G    LD  R    + E LG+ P     
Sbjct: 131 KLLIVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHG 186
Query: 217 PVVGGHAGVTILPLLSQVKPS-CSLTPTEIDYLTDRIQNGGTEV 259
            V+G H G + +P+ S +  +  SL     D  TD+ +    EV
Sbjct: 187 WVLGEH-GDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKEV 229

>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3- Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl) Phenyl)methyl)propanedioic Acid Length = 337

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 98/224 (43%), Gaps = 19/224 (8%)
Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNA 97
           +P  K+ V+G  G +G   A+ + +  L   L L DV+     G   D+ H    + T  
Sbjct: 17  TPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLRTPK 75
Query: 98  VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA 157
           +V G     +  +      +VII AG  ++ G +R +L   N  I K +   + K  P  
Sbjct: 76  IVSG-----KDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNC 130
Query: 158 IVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDV 216
            + ++SNPV+    I   V  K+  +   R++G    LD  R    + E LG+ P     
Sbjct: 131 KLLIVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHG 186
Query: 217 PVVGGHAGVTILPLLSQVKPS-CSLTPTEIDYLTDRIQNGGTEV 259
            V+G H G + +P+ S +  +  SL     D  TD+ +    EV
Sbjct: 187 WVLGEH-GDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKEV 229

>pdb|1BDM|A Chain A, The Structure At 1.8 Angstroms Resolution Of A Single Site Mutant (T189i) Of Malate Dehydrogenase From Thermus Flavus With Increased Enzymatic Activity Length = 327

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 85/213 (39%), Gaps = 22/213 (10%)
Query: 48  KVAVLGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTN 96
           +VAV GAAG IG  L        ML K  P+  +L L ++        GV  ++      
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPV--ILQLLEIPQAMKALEGVVMELEDC-AF 62
Query: 97  AVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPK 156
            ++ G       + A    D  ++    PRK GM R DL  +N  I       +A+   K
Sbjct: 63  PLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKK 122
Query: 157 AI-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD 215
            + V ++ NP N+   IA   +K     +P+    +T LD  RA   +A+  G     + 
Sbjct: 123 DVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIR 179
Query: 216 VPVVGGHAGVTILPLLSQV----KPSCSLTPTE 244
              V G+    + P L       +P+  L   E
Sbjct: 180 RMTVWGNHSSIMFPDLFHAEVDGRPALELVDME 212

>pdb|2V65|A Chain A, Apo Ldh From The Psychrophile C. Gunnari Length = 331

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 6/119 (5%)
Query: 117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 176
           +V++ AG  ++ G +R +L   N  I K +   I K  P  I+ ++SNPV+    I   V
Sbjct: 90  VVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCILMVVSNPVD----ILTYV 145
Query: 177 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 234
             K+  +   R++G  T LD  R    + E L L P      +VG H G + +P+ S V
Sbjct: 146 AWKLSGFPRHRVIGSGTNLDSARFRHLIGEKLHLHPSSCHAWIVGEH-GDSSVPVWSGV 203

>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Benzothiazol-6-Yl)acetamide Length = 331

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 86/197 (43%), Gaps = 18/197 (9%)
Query: 45  PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNAV 98
           P  K+ V+G  G +G   A+ + +  L   L L DV+     G   D+ H    + T  +
Sbjct: 18  PQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKI 76
Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
           V       +         +VII AG  ++ G +R +L   N  I K +   + K  P+  
Sbjct: 77  V-----SSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCK 131
Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVP 217
           + ++SNPV+    I   V  K+  +   R++G    LD  R    + E LG+ P      
Sbjct: 132 LLIVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGW 187
Query: 218 VVGGHAGVTILPLLSQV 234
           V+G H G + +P+ S V
Sbjct: 188 VLGEH-GDSSVPVWSGV 203

>pdb|4AJ4|A Chain A, Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl) Amino)-4-Oxo-Butanoic Acid Length = 332

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 86/197 (43%), Gaps = 18/197 (9%)
Query: 45  PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNAV 98
           P  K+ V+G  G +G   A+ + +  L   L L DV+     G   D+ H    + T  +
Sbjct: 19  PQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKI 77
Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
           V       +         +VII AG  ++ G +R +L   N  I K +   + K  P+  
Sbjct: 78  V-----SSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCK 132
Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVP 217
           + ++SNPV+    I   V  K+  +   R++G    LD  R    + E LG+ P      
Sbjct: 133 LLIVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGW 188
Query: 218 VVGGHAGVTILPLLSQV 234
           V+G H G + +P+ S V
Sbjct: 189 VLGEH-GDSSVPVWSGV 204

>pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On The Refined 3- Angstroms Resolution Structure Of Mouse Testicular Lactate Dehydrogenase C4 Length = 331

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 6/119 (5%)
Query: 117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 176
           +VII AG     G TR DL   N  I+K +  G+ +  P   + +++NPV+    I   V
Sbjct: 90  LVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNPVD----ILTYV 145
Query: 177 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 234
             K+  +   R++G    LD  R    + E LG++P      V+G H G + +P+ S V
Sbjct: 146 VWKISGFPVGRVIGSGCNLDSARFRYLIGEKLGVNPTSCHGWVLGEH-GDSSVPIWSGV 203

>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate Dehydrogenase Framework Length = 332

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 87/197 (44%), Gaps = 18/197 (9%)
Query: 45  PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNAV 98
           P  K+ V+G  G +G   A+ + +  L   + L DV+     G   D+ H    + T  +
Sbjct: 19  PHNKITVVGV-GAVGMACAISILMKELADEIALVDVMEDKLKGEMMDLQHGSLFLRTPKI 77
Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
           V G     +  +      +V+I AG  ++ G +R +L   N  I K +   I K  P   
Sbjct: 78  VSG-----KDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCK 132
Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVP 217
           + ++SNPV+    I   V  K+  +   R++G    LD  R    + E LG+ P      
Sbjct: 133 LLVVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGW 188
Query: 218 VVGGHAGVTILPLLSQV 234
           ++G H G + +P+ S V
Sbjct: 189 ILGEH-GDSSVPVWSGV 204

>pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus Carpio Length = 332

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 6/119 (5%)
Query: 117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 176
           +V++ AG  ++ G +R +L   N  I K +   I K  P  I+ ++SNPV+    I   V
Sbjct: 91  VVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIIKYSPNCILLVVSNPVD----ILTYV 146
Query: 177 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 234
             K+      R++G  T LD  R    + E LG+ P      V+G H G + +P+ S V
Sbjct: 147 AWKLSGLPRNRVIGSGTNLDSARFRHLMGEKLGIHPSNCHGWVIGEH-GDSSVPVWSGV 204

>pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary Complex With Nadh And Oxamate Length = 333

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 176
           IV++ AGV ++ G +R +L   N  + K +   I K  P  I+ ++SNPV+    I   V
Sbjct: 91  IVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVD----ILTYV 146
Query: 177 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
             K+      R++G    LD  R    +AE LG+ P      ++G H   ++
Sbjct: 147 TWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSV 198

>pdb|1T2F|A Chain A, Human B Lactate Dehydrogenase Complexed With Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid Length = 333

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 176
           IV++ AGV ++ G +R +L   N  + K +   I K  P  I+ ++SNPV+    I   V
Sbjct: 91  IVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVD----ILTYV 146
Query: 177 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
             K+      R++G    LD  R    +AE LG+ P      ++G H   ++
Sbjct: 147 TWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSV 198

>pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms Resolution Length = 334

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 176
           IV++ AGV ++ G +R +L   N  + K +   I K  P  I+ ++SNPV+    I   V
Sbjct: 92  IVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPNCIIIVVSNPVD----ILTYV 147
Query: 177 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
             K+      R++G    LD  R    + E LG+ P      ++G H   ++
Sbjct: 148 AWKLSGLPKHRVIGSGCNLDSARFRYLMGEKLGVHPSSCHGWILGEHGDSSV 199

>pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh And Oxamate Length = 331

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 84/195 (43%), Gaps = 18/195 (9%)
Query: 45  PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNAV 98
           P  K+ V+G  G +G   A+ + +  L   L L DV+     G   D+ H    + T  +
Sbjct: 18  PQNKITVVGV-GAVGMACAISILMKDLADELALVDVMEDKLKGEMMDLQHGSLFLRTPKI 76
Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
           V G     +         +VII AG  ++ G +R +L   N  I K +   + K  P   
Sbjct: 77  VSG-----KDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPHCK 131
Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVP 217
           + ++SNPV+    I   V  K+  +   R++G    LD  R    + E LG+        
Sbjct: 132 LLVVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHALSCHGW 187
Query: 218 VVGGHAGVTILPLLS 232
           ++G H G + +P+ S
Sbjct: 188 ILGEH-GDSSVPVWS 201

>pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 330

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 78/182 (42%), Gaps = 17/182 (9%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNAVVRG 101
           K+ V+G  G +G   A+ + +  L   + L DV+     G   D+ H    + T  +V G
Sbjct: 23  KITVVGV-GAVGMACAISILMKDLADEVALVDVMEDKLKGEMMDLQHGSLFLHTAKIVSG 81
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                +      G  +V+I AG  ++ G +R +L   N  I K +   I K  P  I+ +
Sbjct: 82  -----KDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCIILV 136
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           +SNPV+    +A     K+      R++G    LD  R    + E LG+        V+G
Sbjct: 137 VSNPVDVLTYVAW----KLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCSCHGWVIG 192
Query: 221 GH 222
            H
Sbjct: 193 EH 194

>pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 329

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 78/182 (42%), Gaps = 17/182 (9%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNAVVRG 101
           K+ V+G  G +G   A+ + +  L   + L DV+     G   D+ H    + T  +V G
Sbjct: 22  KITVVGV-GAVGMACAISILMKDLADEVALVDVMEDKLKGEMMDLQHGSLFLHTAKIVSG 80
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                +      G  +V+I AG  ++ G +R +L   N  I K +   I K  P  I+ +
Sbjct: 81  -----KDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCIILV 135
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           +SNPV+    +A     K+      R++G    LD  R    + E LG+        V+G
Sbjct: 136 VSNPVDVLTYVAW----KLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCSCHGWVIG 191
Query: 221 GH 222
            H
Sbjct: 192 EH 193

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	289
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	1e-140
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	1e-136
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	1e-129
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	3e-42
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	2e-40
3tl2_A	315	Malate dehydrogenase; center for structural genomi	2e-39
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	5e-39
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	7e-39
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	8e-39
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	2e-38
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	2e-38
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	2e-38
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	4e-38
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	5e-38
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	1e-37
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	2e-36
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	3e-36
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	2e-34
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	3e-34
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	3e-34
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	4e-34
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	8e-34
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	3e-33
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	4e-33
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	2e-32
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	2e-32
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	3e-32
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	3e-32
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	3e-32
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	4e-32
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	1e-31
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	3e-31
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	3e-30
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	7e-30
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	7e-29
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	8e-28
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	4e-08
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	1e-07
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	3e-06
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A Length = 326

 Score =  397 bits (1022), Expect = e-140
 Identities = 215/235 (91%), Positives = 223/235 (94%)

Query: 39  RAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAV 98
           RAKGG+PGFKVA+LGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AV
Sbjct: 1   RAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAV 60

Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
           VRGFLGQQQLE ALTGMD++I+PAGVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP+AI
Sbjct: 61  VRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAI 120

Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPV 218
           VNLISNPVNSTVPIAAEVFKK GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPR+VDVPV
Sbjct: 121 VNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV 180

Query: 219 VGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
           VGGHAGVTILPLLSQVKP  S T  EI YLTDRIQNGGTEVVEAK GAGSATLSM
Sbjct: 181 VGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSM 235

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* Length = 314

 Score =  387 bits (996), Expect = e-136
 Identities = 146/226 (64%), Positives = 177/226 (78%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
           KVAVLGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG +Q
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61

Query: 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
           L D L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP A++ +ISNPVN
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121

Query: 168 STVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
           ST+PI AEVFKK G Y+P ++ GVT LD+VRAN FVAE+ GLDP  V VPV+GGHAG TI
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 181

Query: 228 LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
           +PL+SQ  P       ++  LT RIQ  GTEVV+AK GAGSATLSM
Sbjct: 182 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSM 227

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* Length = 312

 Score =  368 bits (946), Expect = e-129
 Identities = 143/228 (62%), Positives = 169/228 (74%), Gaps = 4/228 (1%)

Query: 48  KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQ 105
           KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
                AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I+NP
Sbjct: 62  DATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGV 225
           VN+TV IAAEV KK G YD  +L GVT LD++R+NTFVAE+ G  P EV+VPV+GGH+GV
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGV 180

Query: 226 TILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
           TILPLLSQV P  S T  E+  LT RIQN GTEVVEAK G GSATLSM
Sbjct: 181 TILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSM 227

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} Length = 343

 Score =  147 bits (372), Expect = 3e-42
 Identities = 62/261 (23%), Positives = 100/261 (38%), Gaps = 26/261 (9%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRGFLGQ 105
           K+ ++GAAG IG  +A    +  L   L LYD       GV  +I H     +       
Sbjct: 10  KLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGL--NLTFT 67

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI-VNLISN 164
             +++ALT    ++   G PRK GMTR+DL   NA I   L + I   CP    V +I N
Sbjct: 68  SDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFN 127

Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA 223
           P + T  +            P ++  +  LD  R  + +A+  G+    V      GGH 
Sbjct: 128 PADITGLVTL----IYSGLKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGH- 182

Query: 224 GVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTG-----AGS 268
           G  +             L+ +  +  LT  +   L  R+  GG  +++ +          
Sbjct: 183 GEQMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLRGRSSFQSPSY 242

Query: 269 ATLSMCRHMLLPSLPMLVSEA 289
            ++ M R  +        +  
Sbjct: 243 VSIEMIRAAMGGEAFRWPAGC 263

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* Length = 313

 Score =  141 bits (359), Expect = 2e-40
 Identities = 67/253 (26%), Positives = 117/253 (46%), Gaps = 32/253 (12%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHM------DTNA 97
           KV ++GA+G +G   A+L+   P +  L L    +      G+  DI         D N 
Sbjct: 2   KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61

Query: 98  VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA 157
            V      + ++++    D+VII +GVPRK GM+R DL   NA IV    + IA+ C   
Sbjct: 62  YVESDENLRIIDES----DVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTK 117

Query: 158 IVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDV 216
           I  +I+NPV+    +          ++  ++ G+ T LD +R    +A+  G+   EV  
Sbjct: 118 IF-VITNPVD----VMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRT 172

Query: 217 PVVGGHAGVTILPLLSQVKPS-------CSLTPTEIDYLTDRIQNGGTEVVEAKTGA--- 266
            ++G H G +++PLLS                   ID + + ++  G +++  K G+   
Sbjct: 173 RIIGEH-GDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLKGGSEFG 231

Query: 267 -GSATLSMCRHML 278
             +A L++ R ++
Sbjct: 232 PAAAILNVVRCIV 244

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} Length = 315

 Score =  139 bits (352), Expect = 2e-39
 Identities = 71/248 (28%), Positives = 118/248 (47%), Gaps = 31/248 (12%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA----DISHM----DTNAVV 99
           KV+V+GA G  G   A L+    L  V+ L D+      T     D+         +A +
Sbjct: 10  KVSVIGA-GFTGATTAFLLAQKELADVV-LVDIPQLENPTKGKALDMLEASPVQGFDANI 67

Query: 100 RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV 159
            G        D+    D+V+I AG+ RKPGM+RDDL   N+ I+K++   IAK  P AI+
Sbjct: 68  IGTSDYADTADS----DVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAII 123

Query: 160 NLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPV 218
            +++NPV+           K   +  +R++G   +LD  R  TF+A+ L L  +++   V
Sbjct: 124 VVLTNPVD----AMTYSVFKEAGFPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFV 179

Query: 219 VGGHAGVTILPLLSQV----KPSCSL-TPTEIDYLTDRIQNGGTEVVE-AKTGA-----G 267
           +GGH G  ++PL+        P  +L     ++ + +R + GG E+V     G+      
Sbjct: 180 LGGH-GDDMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIVGLLGNGSAYYAPA 238

Query: 268 SATLSMCR 275
           ++ + M  
Sbjct: 239 ASLVEMTE 246

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} Length = 321

 Score =  138 bits (349), Expect = 5e-39
 Identities = 83/251 (33%), Positives = 128/251 (50%), Gaps = 34/251 (13%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
           K+ ++GA G IG  LA L  I  L  V+ L+D+      G   D+         +  VRG
Sbjct: 7   KITLVGA-GNIGGTLAHLALIKQLGDVV-LFDIAQGMPNGKALDLLQTCPIEGVDFKVRG 64

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
               + LE++    D+VI+ AGVPRKPGM+RDDL  IN  +++T+ EGI   CP A V  
Sbjct: 65  TNDYKDLENS----DVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVIC 120

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           I+NP++    I   + +K       +++G+  +LD  R  TF+A+ L +  ++V   V+G
Sbjct: 121 ITNPLD----IMVNMLQKFSGVPDNKIVGMAGVLDSARFRTFLADELNVSVQQVQAYVMG 176

Query: 221 GHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE-AKTGA--- 266
           GH G T++PL          L Q+     L    +D +  R ++GG E+V   KTG+   
Sbjct: 177 GH-GDTMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALLKTGSAYY 235

Query: 267 --GSATLSMCR 275
              +A + M  
Sbjct: 236 APAAAGIQMAE 246

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* Length = 309

 Score =  137 bits (348), Expect = 7e-39
 Identities = 63/246 (25%), Positives = 113/246 (45%), Gaps = 29/246 (11%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
           K++++GA G +G   A  +    L  ++ L D+V     G   D+         +  V G
Sbjct: 4   KISIIGA-GFVGSTTAHWLAAKELGDIV-LLDIVEGVPQGKALDLYEASPIEGFDVRVTG 61

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                   ++    D++++ +G PRKPGM+R+DL  +NA I +      A   P A++ +
Sbjct: 62  TNNYADTANS----DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIM 117

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           ++NP++        +  +V  +  +R++G   +LD  R  TF+A   G+   +V   ++G
Sbjct: 118 VNNPLD----AMTYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMG 173

Query: 221 GHAGVTILPLLSQV----KPSCSL-TPTEIDYLTDRIQNGGTEVVEA-KTGA-----GSA 269
           GH G  ++PL         P      P  +  + +R + GG E+V   KTG+      +A
Sbjct: 174 GH-GDEMVPLPRFSCISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLKTGSAYYAPAAA 232

Query: 270 TLSMCR 275
           T  M  
Sbjct: 233 TAQMVE 238

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A Length = 303

 Score =  137 bits (347), Expect = 8e-39
 Identities = 64/247 (25%), Positives = 106/247 (42%), Gaps = 27/247 (10%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT----ADISHM---DTNAVVR 100
           KV+V+GAAG +G      + +  +   +   D+ +    T    AD +H    D+N  V 
Sbjct: 2   KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRV- 60

Query: 101 GFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN 160
               Q   ED   G D+V+I AG+PR+PG TR DL   NA I++ +   + +     I  
Sbjct: 61  ---RQGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISL 116

Query: 161 LISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVV 219
             SNPV+    +      + G    ++++G    LD  R    ++E      + V+  ++
Sbjct: 117 TTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTIL 172

Query: 220 GGHAGVTILPLLSQVKPSC---SLTPTEIDYLTDRIQNGGTEVVEAKTGA-----GSATL 271
           G H G   +P+ S+V         +  E + L   +Q    +V+E K GA          
Sbjct: 173 GEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIERK-GATEWGPARGVA 230

Query: 272 SMCRHML 278
            M   +L
Sbjct: 231 HMVEAIL 237

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A Length = 317

 Score =  136 bits (346), Expect = 2e-38
 Identities = 70/251 (27%), Positives = 117/251 (46%), Gaps = 34/251 (13%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
           K+AV+G+ G IG  +A ++  + L  V+ L+D+      G   DI+H      + + V G
Sbjct: 6   KIAVIGS-GQIGGNIAYIVGKDNLADVV-LFDIAEGIPQGKALDITHSMVMFGSTSKVIG 63

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                 +  +    D+VII A +P +P   R +L   NA I+ ++ EG+ K CP A V  
Sbjct: 64  TDDYADISGS----DVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVIC 119

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           I+NP++    +    F+KV      ++ G+  +LD  R  TF+A+  G++  +V   V+G
Sbjct: 120 ITNPLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIG 175

Query: 221 GHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEA-KTGA--- 266
           GH G  ++P           LS       +T  +ID +    +    EV +  KTG    
Sbjct: 176 GH-GDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVADNLKTGTAYF 234

Query: 267 --GSATLSMCR 275
              +A + M  
Sbjct: 235 APAAAAVKMAE 245

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* Length = 310

 Score =  136 bits (345), Expect = 2e-38
 Identities = 83/249 (33%), Positives = 122/249 (48%), Gaps = 28/249 (11%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGF--- 102
           K+ V+GA G +G   A  +    L   L L DVV     G   D+        V  F   
Sbjct: 2   KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYES---GPVGLFDTK 57

Query: 103 -LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
             G     D     DIVII AG+PRKPGMTR+DL   NAGIVK + + I K     I+ +
Sbjct: 58  VTGSNDYAD-TANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIV 116

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           +SNP++    I   V         +R++G+  +LD  R  +F+A  LG+  ++++  V+G
Sbjct: 117 VSNPLD----IMTHVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLG 172

Query: 221 GHAGVTILPLLSQV----KPSCSLTPTE-IDYLTDRIQNGGTEVVEA-KTGA-----GSA 269
           GH G  ++P++        P   L P E ID L +R +NGG E+VE  K G+      S+
Sbjct: 173 GH-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEHLKQGSAFYAPASS 231

Query: 270 TLSMCRHML 278
            + M   ++
Sbjct: 232 VVEMVESIV 240

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} Length = 328

 Score =  136 bits (346), Expect = 2e-38
 Identities = 77/251 (30%), Positives = 128/251 (50%), Gaps = 34/251 (13%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
           K++++GA G IG  +A+L+    L  V  ++D++     G   D++H      + A + G
Sbjct: 16  KISIIGA-GQIGSTIALLLGQKDLGDVY-MFDIIEGVPQGKALDLNHCMALIGSPAKIFG 73

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
               + L+++    D+VII AGVPRKP MTR DL  +NA IV ++ E + K CP A V  
Sbjct: 74  ENNYEYLQNS----DVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVIC 129

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           I+NP++         FK+       ++ G+  +LD  R    ++  LG+ P +V   VVG
Sbjct: 130 ITNPLD----AMVYYFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSDVSAIVVG 185

Query: 221 GHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEA-KTGA--- 266
           GH G  ++PL          LS       +T ++I+ +  +   GG E+VE  KTG+   
Sbjct: 186 GH-GDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELLKTGSAFY 244

Query: 267 --GSATLSMCR 275
              ++ ++M +
Sbjct: 245 APAASAVAMAQ 255

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} Length = 308

 Score =  135 bits (343), Expect = 4e-38
 Identities = 56/244 (22%), Positives = 104/244 (42%), Gaps = 28/244 (11%)

Query: 49  VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRGF 102
           + +LGA G +G   A+++ +     +L L         G   D++H       +  + G 
Sbjct: 2   ITILGA-GKVGMATAVMLMMRGYDDLL-LIARTPGKPQGEALDLAHAAAELGVDIRISGS 59

Query: 103 LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 162
              + +  +    DIV++ AG+ RKPGMTR+ L   NA  +  L E I      AIV + 
Sbjct: 60  NSYEDMRGS----DIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVIT 115

Query: 163 SNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGG 221
           +NPV+        V  K   +  +R++G   +LD  R   ++++ LG+  + V+  V+G 
Sbjct: 116 TNPVD----AMTYVMYKKTGFPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGM 171

Query: 222 HAGVTILPLLSQVKPSCS-----LTPTEIDYLTDRIQNGGTEVVEAKTGA-----GSATL 271
           H G  + P+              ++  EI+ +     N G ++ E +  +      +  +
Sbjct: 172 H-GQKMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITELRGYSSNYGPAAGLV 230

Query: 272 SMCR 275
               
Sbjct: 231 LTVE 234

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} Length = 314

 Score =  135 bits (342), Expect = 5e-38
 Identities = 67/245 (27%), Positives = 113/245 (46%), Gaps = 27/245 (11%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
           KV V+GA G +G  +A  +    +   + + D+ +    G   D+         +  V G
Sbjct: 2   KVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTG 60

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                  ED+    D+ II AG+PR PGM+RDDL   N  IV  + E   +  P + + +
Sbjct: 61  TNDYGPTEDS----DVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIV 116

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           ++NP++    +   V  +   +   R++G+  +LD  R  +F+AE L +  R+V   ++G
Sbjct: 117 VANPLD----VMTYVAYEASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMG 172

Query: 221 GHAGVTILPLLSQV----KPSCSLTPTE-IDYLTDRIQNGGTEVVEAK-TGA----GSAT 270
           GH G T++PL         P   L     I+ + +R +  G E+V+   T A    G+A 
Sbjct: 173 GH-GDTMVPLPRYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVDLMGTSAWYAPGAAA 231

Query: 271 LSMCR 275
             M  
Sbjct: 232 AEMTE 236

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* Length = 324

 Score =  134 bits (340), Expect = 1e-37
 Identities = 74/251 (29%), Positives = 122/251 (48%), Gaps = 34/251 (13%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
           K+A++G+ G IG  LA L  +  L  V+ L+D+      G   DI+        +A   G
Sbjct: 9   KIALIGS-GMIGGTLAHLAGLKELGDVV-LFDIAEGTPQGKGLDIAESSPVDGFDAKFTG 66

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                 +E A    D+VI+ AGVPRKPGM+RDDL  IN  +++ +  GI K  P+A V  
Sbjct: 67  ANDYAAIEGA----DVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVIC 122

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           I+NP++          +K       +++G+  +LD  R   F++E   +   +V V V+G
Sbjct: 123 ITNPLD----AMVWALQKFSGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVTVFVLG 178

Query: 221 GHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE-AKTGA--- 266
           GH G +++PL          L  +      +  ++D +  R ++GG E+V   KTG+   
Sbjct: 179 GH-GDSMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIVGLLKTGSAFY 237

Query: 267 --GSATLSMCR 275
              ++ + M  
Sbjct: 238 APAASAIQMAE 248

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* Length = 331

 Score =  131 bits (332), Expect = 2e-36
 Identities = 68/256 (26%), Positives = 119/256 (46%), Gaps = 38/256 (14%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGF--- 102
           KVA++G+ G IG  +  L  +  L  V+ LYDVV     G   D+SH+     V      
Sbjct: 11  KVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHV---TSVVDTNVS 65

Query: 103 -LGQQQLEDALTGMDIVIIPAGVPRKPGM-----TRDDLFNINAGIVKTLCEGIAKCCPK 156
              +   E ALTG D VI+ AG+ + PG      +R+DL   N+ I++ + + I K CPK
Sbjct: 66  VRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 125

Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
             + +++NP++       +V  +        + G+  MLD  R   +VA+ L + PR+V 
Sbjct: 126 TFIIVVTNPLD----CMVKVMCEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQ 181

Query: 216 VPVVGGHAGVTILPLLSQVK----------PSCSLTPTEIDYLTDRIQNGGTEVVE-AKT 264
             V+G H G  ++PL+  +               +T  +++ + +  +  G E+V     
Sbjct: 182 ATVIGTH-GDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVRFLGQ 240

Query: 265 GA-----GSATLSMCR 275
           G+      ++ ++M  
Sbjct: 241 GSAYYAPAASAVAMAT 256

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* Length = 322

 Score =  131 bits (331), Expect = 3e-36
 Identities = 64/254 (25%), Positives = 115/254 (45%), Gaps = 37/254 (14%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
           K+ ++G+ G IG  +A L+    L  V+ L+D+V     G   D SH      +N  V G
Sbjct: 6   KIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNCKVSG 63

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMT-----RDDLFNINAGIVKTLCEGIAKCCPK 156
                 L  A    D+VI+ AG  + PG +     RDDL  +N  I+  +   I K CP 
Sbjct: 64  SNTYDDLAGA----DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPN 119

Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
           A + +++NPV+    +  ++  +       +++G+  +LD  R   ++++ L + PR+V+
Sbjct: 120 AFIIVVTNPVD----VMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN 175

Query: 216 VPVVGGHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTG 265
             +VG H G  ++ L          L +   +  ++  E++ + DR  N   E+V     
Sbjct: 176 AHIVGAH-GNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNLHAS 234

Query: 266 A----GSATLSMCR 275
                 +A + M  
Sbjct: 235 PYVAPAAAIIEMAE 248

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 Length = 318

 Score =  126 bits (318), Expect = 2e-34
 Identities = 60/253 (23%), Positives = 104/253 (41%), Gaps = 35/253 (13%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH----MDTNAVVRG 101
           KV ++G  G +G   A  M    +     + DVV   T G   D+           +  G
Sbjct: 7   KVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSG 65

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                +  D     D+V+I AG P+KPG +R DL N N  I+ ++ + +       I  +
Sbjct: 66  -----EYSD-CKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLV 119

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
            +NPV+    I      K   +  +R++G  T LD  R    + +   +DPR VD  ++G
Sbjct: 120 AANPVD----ILTYATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIMG 175

Query: 221 GHAGVTILPLLSQVK----------PSCSLTPTEIDYLTDRIQNGGTEVVEAKTGA---- 266
            H G +     S                 ++  ++  L D ++N   +++  K GA    
Sbjct: 176 EH-GDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIINLK-GATFYG 233

Query: 267 -GSATLSMCRHML 278
            G+A + + + +L
Sbjct: 234 IGTALMRISKAIL 246

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* Length = 317

 Score =  125 bits (317), Expect = 3e-34
 Identities = 60/253 (23%), Positives = 102/253 (40%), Gaps = 34/253 (13%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH----MDTNAVVRG 101
           KV ++G  G +G   A  +    +V  L + D+      G   D+ H      T   V+ 
Sbjct: 8   KVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA 66

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                +  D     D+V+I AG  +KPG TR DL + N  I K++   +       I  +
Sbjct: 67  ----GEYSD-CHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLV 121

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
            +NPV+    I A    K      +R++G  T+LD  R    ++E   + PR VD  ++G
Sbjct: 122 ATNPVD----ILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIG 177

Query: 221 GHAGVTILPLLSQVK----------PSCSLTPTEIDYLTDRIQNGGTEVVEAKTGA---- 266
            H G T LP+ S                     +I+ +  + ++   ++++AK GA    
Sbjct: 178 EH-GDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAK-GATYYG 235

Query: 267 -GSATLSMCRHML 278
                  +   + 
Sbjct: 236 VAMGLARITEAIF 248

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* Length = 316

 Score =  125 bits (316), Expect = 3e-34
 Identities = 53/249 (21%), Positives = 100/249 (40%), Gaps = 25/249 (10%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ 105
           +V V+GA G +G      +    +   + L D       G   D +H    A     +  
Sbjct: 8   RVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH 66

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
              +D     D+V+I AG  +KPG TR DL + N  I +++ E +     + +  + +NP
Sbjct: 67  GDYDD-CRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNP 125

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH-- 222
           V+    I      K      +R++G  T+LD  R    + E   + P+ V   ++G H  
Sbjct: 126 VD----ILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEHGD 181

Query: 223 ------AGVTI--LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGA-----GSA 269
                 +   I  +P+   V+        +++ +   +++   +++E K GA        
Sbjct: 182 TELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKK-GATYYGIAMG 240

Query: 270 TLSMCRHML 278
              + R +L
Sbjct: 241 LARVTRAIL 249

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* Length = 326

 Score =  125 bits (316), Expect = 4e-34
 Identities = 59/253 (23%), Positives = 109/253 (43%), Gaps = 34/253 (13%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH----MDTNAVVRG 101
           KV ++G  G +G   A  M +  +   + + D+    T G   D+S+         +   
Sbjct: 11  KVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSA 69

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                +  D     D+V+I AG P+KPG TR DL N N  I+K++ + I       I  +
Sbjct: 70  -----EYSD-AKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLV 123

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
            +NPV+    I      K+  +   R++G  T LD  R    +AE++ +D R V   ++G
Sbjct: 124 AANPVD----ILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMG 179

Query: 221 GH--------AGVTI--LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGA---- 266
            H        +   I  + +   VK    +   ++  + + +++   E+++ K GA    
Sbjct: 180 EHGDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLK-GATFYG 238

Query: 267 -GSATLSMCRHML 278
             +A   + + +L
Sbjct: 239 IATALARISKAIL 251

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* Length = 326

 Score =  124 bits (314), Expect = 8e-34
 Identities = 60/253 (23%), Positives = 100/253 (39%), Gaps = 33/253 (13%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH----MDTNAVVRG 101
           KVA++GA G +G   A  +    +   L + DV      G   D++H             
Sbjct: 7   KVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSY 65

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                  ED     DIV I AG  +KPG TR +L   N  I K +   +       I  +
Sbjct: 66  ----GTYED-CKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLV 120

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
            +NPV+    I      K      +R++G  T LD  R    ++E  G  P+ V   ++G
Sbjct: 121 ATNPVD----ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHIIG 176

Query: 221 GH--------AGVTI--LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGA---- 266
            H        +   +  +P+   V+ + +    E+D + D ++N    ++E K GA    
Sbjct: 177 EHGDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKK-GATYYG 235

Query: 267 -GSATLSMCRHML 278
              +   + + +L
Sbjct: 236 VAMSLARITKAIL 248

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 Length = 319

 Score =  122 bits (310), Expect = 3e-33
 Identities = 66/253 (26%), Positives = 110/253 (43%), Gaps = 34/253 (13%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ 105
           K+ ++G  G +G   A  + +      + L DV      G   D+ H         F  +
Sbjct: 2   KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTP------FTRR 54

Query: 106 QQLE----DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
             +       L G D+VI+ AGVP+KPG TR  L   NA ++K +   ++K  P +IV +
Sbjct: 55  ANIYAGDYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIV 114

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           ++NPV+    +    F K    DP+++ G  T+LD  R  T +A+  G  PR V V V+G
Sbjct: 115 VTNPVD----VLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIG 170

Query: 221 GH--------AGVTI--LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGA---- 266
            H        +G  I  +PL +  +         ++   ++ +    E++E K GA    
Sbjct: 171 EHGDSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIERK-GATHYA 229

Query: 267 -GSATLSMCRHML 278
              A   +   + 
Sbjct: 230 IALAVADIVESIF 242

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* Length = 319

 Score =  122 bits (309), Expect = 4e-33
 Identities = 60/256 (23%), Positives = 103/256 (40%), Gaps = 37/256 (14%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH----MDTNAVVRG 101
           K+AV+GA G +G  LA       +   + L D+          D+ H      T ++   
Sbjct: 9   KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS 67

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                  E      D+V+I AG  +KPG +R +L      I+K +   + K  P AI  L
Sbjct: 68  ----DDPEI-CRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYML 122

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           I+NPV+    IA  V +K+      ++ G  T LD  R    +A+  G++ + V   + G
Sbjct: 123 ITNPVD----IATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNVHAYIAG 178

Query: 221 GHAGVTILPLLSQV-------------KPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGA- 266
            H G + +PL                      L   + + +   ++N   +++  K GA 
Sbjct: 179 EH-GDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIINGK-GAT 236

Query: 267 ----GSATLSMCRHML 278
               G + + +   +L
Sbjct: 237 NYAIGMSGVDIIEAVL 252

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* Length = 333

 Score =  121 bits (305), Expect = 2e-32
 Identities = 59/256 (23%), Positives = 102/256 (39%), Gaps = 33/256 (12%)

Query: 48  KVAVLGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTP----GVTADISHMDTN 96
           +V V GAAG I   L        +  K  P++  L L D+        GV  ++   D  
Sbjct: 5   RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPII--LVLLDITPMMGVLDGVLMEL--QDCA 60

Query: 97  AV-VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP 155
              ++  +   + E A   +D+ I+   +PR+ GM R DL   N  I K     + K   
Sbjct: 61  LPLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAK 120

Query: 156 KAI-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREV 214
           K++ V ++ NP N+    A+   K   +   +    +T LD  RA   +A  LG+   +V
Sbjct: 121 KSVKVIVVGNPANTNCLTAS---KSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDV 177

Query: 215 DVPVVGGHAGVTILPLLSQV----KPSCSLTPTEI-------DYLTDRIQNGGTEVVEA- 262
              ++ G+   T  P ++      +         +             +Q  G  V++A 
Sbjct: 178 KNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKAR 237

Query: 263 -KTGAGSATLSMCRHM 277
             + A SA  ++C H+
Sbjct: 238 KLSSAMSAAKAICDHV 253

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A Length = 310

 Score =  120 bits (303), Expect = 2e-32
 Identities = 56/254 (22%), Positives = 106/254 (41%), Gaps = 35/254 (13%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ 105
           KV ++G+ G +G   A  + +  +   + L D+          DI H         F   
Sbjct: 2   KVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATP------FAHP 54

Query: 106 QQLE----DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
             +       L G   V++ AGV ++PG TR  L + NA +   +   + +  P+A++ +
Sbjct: 55  VWVWAGSYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLV 114

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
            +NPV+    +  +V   +    P R++G  T+LD  R    +AE L + P+ V   V+G
Sbjct: 115 ATNPVD----VMTQVAYALSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLG 170

Query: 221 GHAGVTILPLLSQV------------KPSCSLTPTEIDYLTDRIQNGGTEVVEAK----T 264
            H G + + + S                  +L+P +   + + ++     ++E K     
Sbjct: 171 EH-GDSEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYY 229

Query: 265 GAGSATLSMCRHML 278
           G G+    + R +L
Sbjct: 230 GIGAGLARLVRAIL 243

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 Length = 318

 Score =  120 bits (303), Expect = 3e-32
 Identities = 63/256 (24%), Positives = 111/256 (43%), Gaps = 39/256 (15%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH----MDTNAVVRG 101
           KVA++GA G +G   A  M +    + L L DV      G   DI+H    M   ++  G
Sbjct: 9   KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAG 67

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                   D +   D++++ AG  RKPG TR DL   N  I K + + I K     ++ +
Sbjct: 68  -----DYSD-VKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILV 121

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           +SNPV+    I   + +K       +++G  T+LD +R    ++E LG+D + V   ++G
Sbjct: 122 VSNPVD----IITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYIIG 177

Query: 221 GH-------------AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGA- 266
            H             AG  I   +   K + +    +   + + ++  G  +++ K GA 
Sbjct: 178 EHGDSQLPLWSCTHIAGKNINEYIDDPKCNFT--EEDKKKIAEDVKTAGATIIKNK-GAT 234

Query: 267 ----GSATLSMCRHML 278
                 +  ++   +L
Sbjct: 235 YYGIAVSINTIVETLL 250

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A Length = 303

 Score =  120 bits (302), Expect = 3e-32
 Identities = 43/237 (18%), Positives = 79/237 (33%), Gaps = 24/237 (10%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTPGVTADISHMDTNAVVRGFLGQQ 106
           K+ V+G  G +G    + +    +   L L D+   T G T D+   +   V       +
Sbjct: 16  KITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVE----ISK 70

Query: 107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 166
            L        +VI           +  D+   N  + + L   +      +++ + S P 
Sbjct: 71  DLSA-SAHSKVVIFTVN-SLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQP- 127

Query: 167 NSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGV 225
              V I   V  K+ T+   R++G+   LD  R    +  VL       +V V+G   G 
Sbjct: 128 ---VEIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQ-GE 183

Query: 226 TILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAK----TGAGSATLSMCRHML 278
             +   S                  ++ N   E++  K       G +   M   ++
Sbjct: 184 DKVLTWSGQ------EEVVSHTSQVQLSNRAMELLRVKGQRSWSVGLSVADMVDSIV 234

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... Length = 331

 Score =  120 bits (303), Expect = 3e-32
 Identities = 54/250 (21%), Positives = 98/250 (39%), Gaps = 26/250 (10%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ 105
           K+ V+G  G +G   A+ + +  L   L L DV+     G   D+ H          +  
Sbjct: 21  KITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSS 79

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
           +          +VII AG  ++ G +R +L   N  I K +   + K  P+  + ++SNP
Sbjct: 80  KDYSV-TANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNP 138

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
           V+    I   V  K+  +   R++G    LD  R    + E LG+ P      V+G H G
Sbjct: 139 VD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEH-G 193

Query: 225 VTILPLLSQV------------KPSCSLTPTEIDYLTDRIQNGGTEVVEAK----TGAGS 268
            + +P+ S V            +        +   +  ++ +   EV++ K       G 
Sbjct: 194 DSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLKGYTSWAIGL 253

Query: 269 ATLSMCRHML 278
           +   +   ++
Sbjct: 254 SVADLAESIM 263

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A* Length = 294

 Score =  119 bits (301), Expect = 4e-32
 Identities = 52/247 (21%), Positives = 105/247 (42%), Gaps = 36/247 (14%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH----MDTNAVVRG 101
           K+  +GA G +G   A    +N  V  + L D+      G   D++H    +D    + G
Sbjct: 2   KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG 60

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                 L+ +    +I+++ AG+ RKPGMTR DL + NAGI+K + + I +  P++ + +
Sbjct: 61  GADYSLLKGS----EIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILV 116

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           ++NP++    +   +  K        + G+   LD  R    +      +       ++G
Sbjct: 117 VTNPMD----VMTYIMWKESGKPRNEVFGMGNQLDSQRLKERLYNAGARNI--RRAWIIG 170

Query: 221 GHAGVTILPLLSQV----KPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGA-----GSATL 271
            H G ++    S      +        + + + + ++    EV++ + GA       A  
Sbjct: 171 EH-GDSMFVAKSLADFDGEV-------DWEAVENDVRFVAAEVIK-RKGATIFGPAVAIY 221

Query: 272 SMCRHML 278
            M + ++
Sbjct: 222 RMVKAVV 228

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* Length = 327

 Score =  118 bits (299), Expect = 1e-31
 Identities = 61/250 (24%), Positives = 97/250 (38%), Gaps = 26/250 (10%)

Query: 48  KVAVLGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTPGVTADISHMDT----N 96
           +VAV GAAG IG  L        ML K  P++  L L ++        +   M+      
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVI--LQLLEIPQAMKA-LEGVVMELEDCAF 62

Query: 97  AVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPK 156
            ++ G       + A    D  ++    PRK GM R DL  +N  I       +A+   K
Sbjct: 63  PLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKK 122

Query: 157 AI-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD 215
            + V ++ NP N+   IA    K     +P+    +T LD  RA   +A+  G     + 
Sbjct: 123 DVKVLVVGNPANTNALIAY---KNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIR 179

Query: 216 VPVVGGHAGVTILPLLSQV----KPSCSLTPTE--IDYLTDRIQNGGTEVVEA--KTGAG 267
              V G+   T+ P L       +P+  L   E         +   G  +++A   + A 
Sbjct: 180 RMTVWGNHSSTMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQARGASSAA 239

Query: 268 SATLSMCRHM 277
           SA  +   H+
Sbjct: 240 SAANAAIEHI 249

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A Length = 329

 Score =  117 bits (296), Expect = 3e-31
 Identities = 59/254 (23%), Positives = 91/254 (35%), Gaps = 31/254 (12%)

Query: 48  KVAVLGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTP------GVTADISHMD 94
           +VAV GAAG I   L        ML K  P++  L L ++ N        GV  +I   D
Sbjct: 7   RVAVTGAAGQICYSLLFRIANGDMLGKDQPVI--LQLLEIPNEKAQKALQGVMMEI--DD 62

Query: 95  TNA-VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC 153
               ++ G         A    D+ ++    PR PGM R DL   NA I     + I   
Sbjct: 63  CAFPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAV 122

Query: 154 CPK-AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPR 212
             +   V ++ NP N+   IA    K   +   K    +  LD  RA + +A   G    
Sbjct: 123 ASRNIKVLVVGNPANTNAYIAM---KSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVS 179

Query: 213 EVDVPVVGGHAGVTILPLLSQV----KPSCSLTPTE---IDYLTDRIQNGGTEVVEA-KT 264
            ++   V G+   T+                +   +    D     +   G  +++A   
Sbjct: 180 SIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDARGV 239

Query: 265 G-AGSATLSMCRHM 277
             A SA  +   H+
Sbjct: 240 SSAASAANAAIDHI 253

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 Length = 330

 Score =  115 bits (289), Expect = 3e-30
 Identities = 45/194 (23%), Positives = 76/194 (39%), Gaps = 18/194 (9%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH----MDTNAVVRG 101
           K+ V+G    +G   A+ + +  L   + L DV+     G   D+ H    + T  +V G
Sbjct: 23  KITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSG 81

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
               +       G  +V+I AG  ++ G +R +L   N  I K +   I K  P  +  L
Sbjct: 82  ----KDYSV-SAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKEL 136

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
                        +   K+      R++G    LD  R    + E LG+    V   V+G
Sbjct: 137 HPELGT----DKNKQDWKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCLVIGWVIG 192

Query: 221 GHAGVTILPLLSQV 234
            H G ++  + S +
Sbjct: 193 QH-GDSVPSVWSGM 205

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* Length = 375

 Score =  114 bits (288), Expect = 7e-30
 Identities = 53/252 (21%), Positives = 90/252 (35%), Gaps = 29/252 (11%)

Query: 48  KVAVLGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTP----GVTADISHMDTN 96
            +AV GAAG I   L        +  +  P+   L L     +     GV  ++   D+ 
Sbjct: 34  NIAVSGAAGMISNHLLFKLASGEVFGQDQPIA--LKLLGSERSFQALEGVAMEL--EDSL 89

Query: 97  AV-VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP 155
              +R         +    +D  ++    PR PGM R  L +IN  I     + +     
Sbjct: 90  YPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVAS 149

Query: 156 KAI-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREV 214
           K + V ++ NP N+   I     K       K    +T LD  RA   +A   G+   +V
Sbjct: 150 KNVKVLVVGNPCNTNALICL---KNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKV 206

Query: 215 DVPVVGGHAGVTILPLLSQVKPSCSLTPTEI-------DYLTDRIQNGGTEVVEA--KTG 265
               + G+   T +P     K         I       +  T  +Q  G  +++   ++ 
Sbjct: 207 SNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKWGRSS 266

Query: 266 AGSATLSMCRHM 277
           A S  +S+   +
Sbjct: 267 AASTAVSIADAI 278

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} Length = 304

 Score =  111 bits (279), Expect = 7e-29
 Identities = 59/257 (22%), Positives = 97/257 (37%), Gaps = 43/257 (16%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHM-----DTNAVVR 100
           KV V+G  G +G   A  + +    S L L D           DI+H       T     
Sbjct: 2   KVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHG 60

Query: 101 GFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN 160
           G          L    +VI+ AG  +KPG +R DL   NA I + L   I +  P A++ 
Sbjct: 61  GH-------SELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLL 113

Query: 161 LISNPVNSTVPIAAEVFKKVGTYDPK-RLLGV-TMLDVVRANTFVAEVLGLDPREVDVPV 218
           + SNPV+    +  ++  ++    P   ++G  T+LD  R    +A+  G+D       V
Sbjct: 114 VTSNPVD----LLTDLATQL---APGQPVIGSGTVLDSARFRHLMAQHAGVDGTHAHGYV 166

Query: 219 VGGH-------------AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAK-- 263
           +G H             AG+ +   +                + +  +N    ++E K  
Sbjct: 167 LGEHGDSEVLAWSSAMVAGMPVADFMQAQNL--PWNEQVRAKIDEGTRNAAASIIEGKRA 224

Query: 264 --TGAGSATLSMCRHML 278
              G G+A   +   +L
Sbjct: 225 TYYGIGAALARITEAVL 241

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 Length = 309

 Score =  108 bits (272), Expect = 8e-28
 Identities = 48/249 (19%), Positives = 94/249 (37%), Gaps = 25/249 (10%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLGQ 105
           K+ ++G  G +G  +A  +    +       D           D      N    G +  
Sbjct: 3   KIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI 61

Query: 106 QQLEDALTGMDIVIIPAGVPR----KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                 L   D+VI   G  +     P   R       + +V+++   + +     ++ +
Sbjct: 62  NDWAA-LADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVV 120

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           ISNPV+    +   +F+ V  +   +++G  T+LD  R    V E   LDPR V    +G
Sbjct: 121 ISNPVD----VITALFQHVTGFPAHKVIGTGTLLDTARMQRAVGEAFDLDPRSVSGYNLG 176

Query: 221 GHAGVTILPLLSQV----KPSCSLTPT---EIDYLTDRIQNGGTEVVEAK----TGAGSA 269
            H G +     S V    +P  +L      ++  + +  + GG  V+  K     G  ++
Sbjct: 177 EH-GNSQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNGKGYTSYGVATS 235

Query: 270 TLSMCRHML 278
            + + + ++
Sbjct: 236 AIRIAKAVM 244

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 Length = 480

 Score = 53.0 bits (126), Expect = 4e-08
 Identities = 40/210 (19%), Positives = 64/210 (30%), Gaps = 45/210 (21%)

Query: 45  PGFKVAVLGAAGGIGQP---LAMLMKINPL-VSVLHLYDV----VNTPGVTADISHMDTN 96
           P  K+ ++GA G        ++ L K   L  S + L D+    ++     A     +  
Sbjct: 2   PSVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVG 60

Query: 97  AVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGI-------------- 142
           A ++ F     L+D +   D VI  A V     + +        G               
Sbjct: 61  ADLK-FEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSD 119

Query: 143 ------------VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG 190
                          +   I K  PKA     +NP+             V    P + +G
Sbjct: 120 YYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPI-FEGTTL------VTRTVPIKAVG 172

Query: 191 VTMLDVVRANTFVAEVLGLDPREVDVPVVG 220
                       + E LGL+  +VD  V G
Sbjct: 173 FC--HGHYGVMEIVEKLGLEEEKVDWQVAG 200

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} Length = 450

 Score = 51.6 bits (123), Expect = 1e-07
 Identities = 36/202 (17%), Positives = 67/202 (33%), Gaps = 28/202 (13%)

Query: 47  FKVAVLGAAGGIG---QPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGF 102
            K+A +G  G  G     ++ L     +   + LYD+          I +   N   R +
Sbjct: 6   IKIAYIGG-GSQGWARSLMSDLSIDERMSGTVALYDLDFEAAQKNEVIGNHSGNGRWR-Y 63

Query: 103 LGQQQLEDALTGMDIVIIPAGV------------PRKPGMTRDDLFNINAG--------- 141
                L+ AL+  DIVII                P + G+ +     +  G         
Sbjct: 64  EAVSTLKKALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAV 123

Query: 142 -IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRAN 200
            I   +   I    P++ V   +NP++    +  +VF  +        +  T   +    
Sbjct: 124 PIFAEIARAIRDYAPESWVINYTNPMSVCTRVLYKVFPGIKAIGCCHEVFGTQKLLAEMV 183

Query: 201 TFVAEVLGLDPREVDVPVVGGH 222
           T    +      ++ V V+G +
Sbjct: 184 TERLGIEVPRREDIRVNVLGIN 205

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 Length = 472

 Score = 47.5 bits (112), Expect = 3e-06
 Identities = 35/218 (16%), Positives = 70/218 (32%), Gaps = 40/218 (18%)

Query: 46  GFKVAVLGAAGGIGQP---LAMLMKINPL-VSVLHLYDV----VNTPGVTADISHMDTNA 97
            F + + G  G    P   L +L  +    +  L LYD      +      D+   +   
Sbjct: 28  SFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAP 86

Query: 98  VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGI--------------- 142
            +  F      E+A T +D V+    V +      D+   +  G+               
Sbjct: 87  DIE-FAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGM 145

Query: 143 -----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVV 197
                V  + + + K  P A +   SNP          +          ++L +  +  V
Sbjct: 146 RSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPNS------KILNICDM-PV 198

Query: 198 RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK 235
                +A++LGL  R+    +   + G+      + ++
Sbjct: 199 GIEDRMAQILGLSSRKE---MKVRYYGLNHFGWWTSIQ 233

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 Length = 450

 Score = 44.0 bits (103), Expect = 3e-05
 Identities = 40/242 (16%), Positives = 74/242 (30%), Gaps = 40/242 (16%)

Query: 46  GFKVAVLGA----AGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-----DTN 96
             K+A +G        + + L       P V  L L D+         +  +     +  
Sbjct: 7   RLKIATIGGGSSYTPELVEGLIKRYHELP-VGELWLVDIPEGKEKLEIVGALAKRMVEKA 65

Query: 97  AVVRGFLGQQQLEDALTGMDIVIIPAGV------------PRKPGMTRDDLFNI------ 138
            V            AL G D V     V            P K G+   +          
Sbjct: 66  GVPIEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKG 125

Query: 139 --NAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDV 196
                ++  +   + + CP A +   +NP            K+       +++G+  +  
Sbjct: 126 LRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRYTKQE------KVVGLCNV-P 178

Query: 197 VRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGG 256
           +     VA++LG+D   V +   G +  V  L +         +T   ID +    ++G 
Sbjct: 179 IGMRMGVAKLLGVDADRVHIDFAGLNHMVFGLHVYLDGV---EVTEKVIDLVAHPDRSGV 235

Query: 257 TE 258
           T 
Sbjct: 236 TM 237

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 33/245 (13%), Positives = 66/245 (26%), Gaps = 78/245 (31%)

Query: 28  GESSGLGRMDCRAKG--GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG 85
           G++  +    C +        FK+  L        P  +L  +  L+  +        P 
Sbjct: 162 GKTW-VALDVCLSYKVQCKMDFKIFWLNL-KNCNSPETVLEMLQKLLYQI-------DPN 212

Query: 86  VTADISHM--------DTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFN 137
            T+   H            A +R  L  +  E+ L    +V+              ++  
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL----LVL-------------LNVQ- 254

Query: 138 INAGIVKTLCEGIAKCCPKAIV----NLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTM 193
            NA         +  C  K ++      +++ +++       +     T  P  +  +  
Sbjct: 255 -NAKAWNAF--NL-SC--KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-- 306

Query: 194 LDVVRANTFVAEVLGLD----PREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLT 249
                    + + L       PREV          +T  P         S+    I    
Sbjct: 307 ---------LLKYLDCRPQDLPREV----------LTTNPRR------LSIIAESIRDGL 341

Query: 250 DRIQN 254
               N
Sbjct: 342 ATWDN 346

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	289
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	100.0
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	100.0
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	100.0
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	100.0
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	100.0
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	100.0
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	100.0
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	100.0
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	100.0
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	100.0
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	100.0
3tl2_A	315	Malate dehydrogenase; center for structural genomi	100.0
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	100.0
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	100.0
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	100.0
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	100.0
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	100.0
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	100.0
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	100.0
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	100.0
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	100.0
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	100.0
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	100.0
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	100.0
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	100.0
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	100.0
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	100.0
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	100.0
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	100.0
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	100.0
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	100.0
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	100.0
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	100.0
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	100.0
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	100.0
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	100.0
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	100.0
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	100.0
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	100.0
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	100.0
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	100.0
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	100.0
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	99.93
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	99.92
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	99.92
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	98.96
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	98.9
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	98.82
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	98.77
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	98.73
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	98.73
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	98.69
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	98.68
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	98.68
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	98.67
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	98.65
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	98.61
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	98.6
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	98.59
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	98.59
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	98.58
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	98.58
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	98.58
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	98.57
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	98.57
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	98.57
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	98.57
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	98.57
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	98.56
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	98.56
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	98.56
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	98.55
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	98.54
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	98.54
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	98.54
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	98.53
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	98.5
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	98.5
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	98.5
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	98.49
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	98.49
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	98.48
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	98.47
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	98.47
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	98.47
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	98.46
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	98.45
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	98.45
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	98.44
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	98.43
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	98.42
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	98.41
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	98.39
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	98.39
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	98.39
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	98.38
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	98.38
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	98.38
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	98.38
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	98.38
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	98.38
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	98.37
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	98.37
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	98.35
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	98.35
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	98.35
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	98.35
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	98.34
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	98.34
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	98.33
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	98.33
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	98.32
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	98.31
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	98.29
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	98.29
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	98.28
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	98.28
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	98.28
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	98.27
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	98.25
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	98.25
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	98.23
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	98.23
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	98.23
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	98.23
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	98.23
1xq6_A	253	Unknown protein; structural genomics, protein stru	98.21
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	98.21
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	98.21
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	98.2
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	98.2
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	98.19
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	98.19
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	98.19
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	98.18
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	98.17
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	98.17
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	98.17
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	98.16
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	98.16
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	98.16
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	98.15
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	98.15
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	98.15
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	98.13
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	98.13
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	98.13
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	98.11
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	98.11
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	98.11
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	98.1
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	98.08
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	98.08
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	98.06
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	98.06
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	98.06
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	98.06
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	98.06
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	98.05
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	98.05
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	98.05
3qha_A	296	Putative oxidoreductase; seattle structural genomi	98.04
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	98.04
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	98.04
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	98.03
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	98.02
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	98.02
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	98.02
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	98.02
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	98.02
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	98.02
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	98.01
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	98.0
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	98.0
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	97.99
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	97.99
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.99
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	97.98
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	97.98
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	97.98
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	97.96
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	97.95
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	97.95
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.94
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	97.93
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	97.93
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	97.92
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	97.92
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	97.92
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	97.91
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	97.91
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	97.91
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	97.91
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	97.9
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	97.89
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	97.89
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	97.89
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	97.89
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	97.89
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	97.89
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	97.89
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	97.89
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	97.89
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	97.88
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	97.88
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	97.87
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	97.87
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	97.87
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	97.87
4f6c_A	427	AUSA reductase domain protein; thioester reductase	97.85
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	97.85
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	97.85
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	97.85
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.84
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	97.84
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	97.84
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	97.84
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	97.83
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	97.83
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	97.83
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.83
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	97.83
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	97.83
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	97.83
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	97.82
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	97.82
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	97.81
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	97.81
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	97.81
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	97.81
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	97.8
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.8
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	97.79
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	97.79
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	97.79
1xq1_A	266	Putative tropinone reducatse; structural genomics,	97.79
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	97.78
4ezb_A	317	Uncharacterized conserved protein; structural geno	97.78
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	97.78
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	97.77
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	97.77
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	97.77
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	97.77
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	97.76
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	97.76
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	97.76
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	97.76
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	97.76
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.76
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	97.75
1spx_A	278	Short-chain reductase family member (5L265); paral	97.75
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	97.74
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	97.74
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	97.73
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.72
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	97.72
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	97.72
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.72
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	97.72
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	97.72
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.71
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	97.71
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	97.71
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	97.71
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	97.71
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	97.71
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	97.71
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.7
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	97.7
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	97.7
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	97.7
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	97.7
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	97.69
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	97.69
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	97.69
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	97.69
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	97.69
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	97.69
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	97.69
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	97.68
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	97.68
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	97.68
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	97.68
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	97.68
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	97.68
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	97.66
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	97.66
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	97.66
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	97.65
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	97.65
4f6l_B	508	AUSA reductase domain protein; thioester reductase	97.65
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	97.65
3rih_A	293	Short chain dehydrogenase or reductase; structural	97.64
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	97.64
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	97.64
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	97.63
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	97.63
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	97.63
3cxt_A	291	Dehydrogenase with different specificities; rossma	97.63
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	97.62
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	97.62
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	97.62
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	97.62
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	97.62
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	97.62
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	97.62
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	97.62
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	97.62
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	97.61
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	97.61
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	97.61
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	97.6
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	97.6
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	97.6
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	97.6
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	97.6
4dqx_A	277	Probable oxidoreductase protein; structural genomi	97.6
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.6
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	97.6
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.59
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.59
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	97.58
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	97.58
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	97.58
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	97.58
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	97.57
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	97.57
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	97.57
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	97.57
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	97.57
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	97.57
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	97.56
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	97.56
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	97.56
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	97.55
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	97.55
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	97.55
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	97.55
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	97.55
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	97.54
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	97.54
3imf_A	257	Short chain dehydrogenase; structural genomics, in	97.53
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	97.53
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	97.53
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	97.53
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	97.53
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	97.53
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	97.53
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	97.53
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	97.53
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	97.53
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	97.52
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	97.52
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	97.51
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	97.5
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	97.49
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	97.49
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	97.49
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	97.49
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	97.49
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	97.47
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	97.47
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	97.46
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	97.46
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	97.45
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	97.45
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	97.44
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	97.44
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	97.44
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	97.43
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	97.42
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.42
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	97.41
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	97.41
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	97.41
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	97.41
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	97.41
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	97.41
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	97.4
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	97.4
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	97.4
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.39
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	97.39
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	97.38
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	97.38
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	97.38
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	97.37
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	97.37
1xkq_A	280	Short-chain reductase family member (5D234); parra	97.37
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	97.37
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	97.36
1xhl_A	297	Short-chain dehydrogenase/reductase family member	97.36
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	97.35
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.34
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	97.33
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	97.33
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	97.33
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.33
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	97.32
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	97.32
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	97.32
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	97.29
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	97.29
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	97.28
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	97.28
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	97.28
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	97.28
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	97.27
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	97.27
3uw3_A	377	Aspartate-semialdehyde dehydrogenase; structural g	97.27
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	97.26
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	97.26
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	97.25
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	97.24
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	97.24
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	97.22
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	97.21
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	97.17
4e4y_A	244	Short chain dehydrogenase family protein; structur	97.17
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	97.16
3pzr_A	370	Aspartate-semialdehyde dehydrogenase; NADP, oxidor	97.15
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	97.12
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	97.07
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.05
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	97.04
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	96.1
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	97.02
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.02
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	97.01
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	97.01
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	97.01
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	97.0
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	97.0
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	96.96
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	96.96
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	96.91
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	96.9
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	96.87
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	96.86
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	96.85
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	96.84
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	96.84
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	96.83
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.82
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	96.81
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	96.8
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	96.79
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.78
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	96.78
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	96.77
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	96.77
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	96.76
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	96.75
3tz6_A	344	Aspartate-semialdehyde dehydrogenase; asadh, ASD,	96.74
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	96.72
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	96.69
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	96.67
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	96.66
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	96.66
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	96.65
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	96.65
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	96.63
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	96.63
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.62
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	96.57
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	96.56
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	96.54
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	96.54
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	96.53
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	96.51
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	96.5
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	96.5
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	96.5
4dpk_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	96.49
4dpl_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	96.49
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	96.49
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	96.49
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	96.49
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	96.48
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	96.47
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.47
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	96.44
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	96.44
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	96.43
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	96.38
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	96.37
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.37
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	96.36
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	96.36
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	96.35
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	96.35
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	96.34
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	96.33
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	96.32
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	96.32
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.28
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	96.27
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	96.27
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	96.26
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	96.26

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=100.00  E-value=4.3e-55  Score=405.73  Aligned_cols=239  Identities=60%  Similarity=0.916  Sum_probs=214.8

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhC-CCccEEEEEeCCC-chhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~-g~~~eI~LvD~~~-~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      |||+||||+|+||+++++.|+.+ ++.+||+|+|+++ ..|+++||.|......+..+.++++ +++++|||+||+++|.
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~~~~~~-~~~~~~aDivii~ag~   79 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDA-TPALEGADVVLISAGV   79 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTSCSSEEEEEECSSCC-HHHHTTCSEEEECCSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCCCCCceEEEecCCCc-HHHhCCCCEEEEeCCC
Confidence            69999996699999999999887 7888999999997 6799999999864345554432334 5899999999999999


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCC-CCCcEEEeeeccHHHHHHHH
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY-DPKRLLGVTMLDVVRANTFV  203 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~-~~~kviG~t~lds~R~~~~l  203 (289)
                      |++|||+|.|++..|+++++++++.|+++||+++++++|||+|++||+++++++ .+|+ |++||+|+|.||++|++++|
T Consensus        80 ~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtNPvd~~t~~a~~~~k-~sg~~p~~rv~G~~~LD~~R~~~~l  158 (312)
T 3hhp_A           80 ARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLK-KAGVYDKNKLFGVTTLDIIRSNTFV  158 (312)
T ss_dssp             SCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHH-HTTCCCTTSEEECCHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecCcchhHHHHHHHHHH-HcCCCCcceEEEEechhHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999776654 5676 99999999999999999999


Q ss_pred             HHHcCCCCcceeeeEEcccCCCeeeeecccccCCCCCChhhHHHHHHHHHhhhHHHhhhcCCCCcchHHHHHHHHHHHHH
Q 022947          204 AEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMCRHMLLPSLP  283 (289)
Q Consensus       204 A~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~~s~A~a~~~~~~a  283 (289)
                      |+++|+++++|+++|||||+++|+||+||++ -+..+++++|++|.++|+++|++|++.|.|+|+++||+|.|+++++++
T Consensus       159 a~~lgv~~~~v~~~V~G~Hsg~t~vp~~S~~-~g~~~~~~~~~~i~~~v~~~g~eIi~~k~g~gst~~s~a~a~~~~~~a  237 (312)
T 3hhp_A          159 AELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLS  237 (312)
T ss_dssp             HHHHTCCGGGCCCCEEECSSGGGEEECGGGC-TTCCCCHHHHHHHHHHHHTHHHHHHHHTTTSCCCCHHHHHHHHHHHHH
T ss_pred             HHHhCcChhHcceeEEeccCCCceeeecccC-CCCCCCHHHHHHHHHHHHhhhHHHHhhccCCCCchhHHHHHHHHHHHH
Confidence            9999999999999999999444999999998 333578889999999999999999998878899999999999999999


Q ss_pred             H---hcCC
Q 022947          284 M---LVSE  288 (289)
Q Consensus       284 i---l~~~  288 (289)
                      |   ++|+
T Consensus       238 i~~~l~~~  245 (312)
T 3hhp_A          238 LVRALQGE  245 (312)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHcCCC
Confidence            9   7775

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=100.00  E-value=9.9e-55  Score=406.07  Aligned_cols=236  Identities=22%  Similarity=0.346  Sum_probs=211.4

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEc
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIit  121 (289)
                      ...+||+|||+ |.||+++++.|+..++++||+|+|+++  ++|+++||.|...+.....+..++|| ++++|||+||++
T Consensus        17 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~-~~~~~aDiVvi~   94 (331)
T 4aj2_A           17 VPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDY-SVTANSKLVIIT   94 (331)
T ss_dssp             CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSG-GGGTTEEEEEEC
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCH-HHhCCCCEEEEc
Confidence            45679999998 999999999999999999999999987  68999999998532222112224577 689999999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHH
Q 022947          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRAN  200 (289)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R~~  200 (289)
                      +|.|++|||+|.|++.+|+++++++++.|+++||+++++++|||+|++|+++    ++.+++|++||||+ |.||++|++
T Consensus        95 aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtNPvdi~t~~~----~k~sg~p~~rviG~gt~LD~~R~~  170 (331)
T 4aj2_A           95 AGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPVDILTYVA----WKISGFPKNRVIGSGCNLDSARFR  170 (331)
T ss_dssp             CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH----HHHHCCCGGGEEECTTHHHHHHHH
T ss_pred             cCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHH----HHHhCCCHHHEEeeccccHHHHHH
Confidence            9999999999999999999999999999999999999999999999998654    66779999999999 999999999


Q ss_pred             HHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCC------------CCChhhHHHHHHHHHhhhHHHhhhcCCCCc
Q 022947          201 TFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC------------SLTPTEIDYLTDRIQNGGTEVVEAKTGAGS  268 (289)
Q Consensus       201 ~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~------------~~~~~~~~~i~~~v~~~g~~i~~~k~g~g~  268 (289)
                      +++|+++|++|++|+++||||||+ ++||+||++++++            .+++++|++|.++|+++|++|++.|   |+
T Consensus       171 ~~la~~lgv~~~~V~~~ViGeHG~-s~vp~~S~~~v~G~p~~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~k---g~  246 (331)
T 4aj2_A          171 YLMGERLGVHPLSCHGWVLGEHGD-SSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLK---GY  246 (331)
T ss_dssp             HHHHHHHTSCGGGCBCCEEBCSST-TCEECGGGCEETTEEHHHHCTTTTSTTCTTCTHHHHHHHHHHHHHHHHHH---SS
T ss_pred             HHHHHHhCCCHHHCEEeEEecCCC-ceeEeeecCeECCEEHHHHHhhccCCCCHHHHHHHHHHHHHhHHHHhhcC---CC
Confidence            999999999999999999999998 8999999998753            1356779999999999999999976   67


Q ss_pred             chHHHHHHHHHHHHHHhcCCC
Q 022947          269 ATLSMCRHMLLPSLPMLVSEA  289 (289)
Q Consensus       269 t~~s~A~a~~~~~~ail~~~~  289 (289)
                      |+||+|.++++++++|++|+.
T Consensus       247 t~~a~a~a~a~~~~ail~d~~  267 (331)
T 4aj2_A          247 TSWAIGLSVADLAESIMKNLR  267 (331)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCC
T ss_pred             CchhHHHHHHHHHHHHHhCCC
Confidence            899999999999999999963

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=100.00  E-value=1.5e-54  Score=398.69  Aligned_cols=225  Identities=23%  Similarity=0.361  Sum_probs=203.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccC----CceEEEEecCCCHHhhhCCCCEEEE
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----NAVVRGFLGQQQLEDALTGMDIVII  120 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~----~~~v~~~~~t~d~~eal~~aDiVIi  120 (289)
                      |||+|||| |+||+++|+.|+.+++++||+|+|+++  ++|+++||+|+..    .+++.   +++|| ++++|||+||+
T Consensus         1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~---~~~d~-~~~~~aDvVvi   75 (294)
T 2x0j_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIV---GGADY-SLLKGSEIIVV   75 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEE---EESCG-GGGTTCSEEEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEe---cCCCH-HHhCCCCEEEE
Confidence            79999998 999999999999999999999999988  7899999999753    23333   24566 78999999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHH
Q 022947          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRA  199 (289)
Q Consensus       121 tag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R~  199 (289)
                      +||.||+|||+|+|++..|+++++++++++.++||+++++++|||+|+|||++    ++.+|+|++|+||+ |.||++||
T Consensus        76 tAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsNPvd~~t~i~----~k~sg~p~~rvig~gT~LDs~R~  151 (294)
T 2x0j_A           76 TAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYIM----WKESGKPRNEVFGMGNQLDSQRL  151 (294)
T ss_dssp             CCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHHHHH----HHHSSCCTTSEEECCHHHHHHHH
T ss_pred             ecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecCcchhhHHhh----HHHcCCChhhEEEeeeEEeHHHH
Confidence            99999999999999999999999999999999999999999999999999864    66789999999999 89999999


Q ss_pred             HHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCCCCChhhHHHHHHHHHhhhHHHhhhcCCCCcchHHHHHHHHH
Q 022947          200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMCRHMLL  279 (289)
Q Consensus       200 ~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~~s~A~a~~~  279 (289)
                      +++|++.+++++.  +++||||||+ ||||+||++++.+.   .+++++.++++++|++|++.|   |+|+||+|.++++
T Consensus       152 ~~~l~~~~~~~~~--~~~V~G~HGd-t~vp~~S~~~v~g~---~~~~~i~~~~~~~g~eIi~~k---Gst~~a~a~a~~~  222 (294)
T 2x0j_A          152 KERLYNAGARNIR--RAWIIGEHGD-SMFVAKSLADFDGE---VDWEAVENDVRFVAAEVIKRK---GATIFGPAVAIYR  222 (294)
T ss_dssp             HHHHHHTTCEEEC--CCCEEBCSST-TCEECGGGCCEESC---CCHHHHHHHHHTHHHHHHHHH---SSCCHHHHHHHHH
T ss_pred             HHHHhhcccCCcc--eeEEEecCCC-cEEEeeeccCCCCc---hhHHHHHHHHhhhheEEEecC---cccchhHHHHHHH
Confidence            9999999876543  6999999998 99999999998542   357889999999999999976   7899999999999


Q ss_pred             HHHHHhcCCC
Q 022947          280 PSLPMLVSEA  289 (289)
Q Consensus       280 ~~~ail~~~~  289 (289)
                      ++++|++|+.
T Consensus       223 ~~~ail~d~~  232 (294)
T 2x0j_A          223 MVKAVVEDTG  232 (294)
T ss_dssp             HHHHHHTTCC
T ss_pred             HHHHHHcCCC
Confidence            9999999974

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=100.00  E-value=4.2e-53  Score=392.88  Aligned_cols=240  Identities=60%  Similarity=0.964  Sum_probs=222.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~~  126 (289)
                      |||+||||+|+||++++..|+..++..||+|+|+++.+++++||.|.....+++.+.+++|++++++|||+||+++|.|+
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~~   80 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR   80 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcCC
Confidence            69999998899999999999999988899999999877889999997644456654344688889999999999999999


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHH
Q 022947          127 KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEV  206 (289)
Q Consensus       127 ~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t~lds~R~~~~lA~~  206 (289)
                      ++|++|.|++.+|+++++++++.|++++|+++++++|||+|++|+++++++++.++||++||||+|.||+.|+++++|++
T Consensus        81 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~~~~~~~~~~~p~~rvig~t~Ld~~r~~~~la~~  160 (314)
T 1mld_A           81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAEL  160 (314)
T ss_dssp             CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEECCHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCCcchhHHHHHHHHHHcCCCCcceEEEeecccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999898999999999999999999999999999999


Q ss_pred             cCCCCcceeeeEEccc-CCCeeeeecccccCCCCCChhhHHHHHHHHHhhhHHHhhhcCCCCcchHHHHHHHHHHHHHHh
Q 022947          207 LGLDPREVDVPVVGGH-AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMCRHMLLPSLPML  285 (289)
Q Consensus       207 l~v~~~~V~~~V~G~h-g~~~~vp~~S~~~v~~~~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~~s~A~a~~~~~~ail  285 (289)
                      +|++|++|+++||||| |+ +++|+||++++...+++++++++.++++++|++|++.|.|+|+++|++|.++++++++|+
T Consensus       161 l~v~~~~v~~~v~G~H~G~-~~~p~~s~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k~~~g~t~~~~a~a~~~~~~ai~  239 (314)
T 1mld_A          161 KGLDPARVSVPVIGGHAGK-TIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLV  239 (314)
T ss_dssp             TTCCGGGCBCCEEECSSGG-GEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCCHHHHHHHHHHHHHHH
T ss_pred             hCcChHhEEEEEccCCCCC-cEeeecccCCCcccCCHHHHHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHHH
Confidence            9999999999999999 67 899999999865558888899999999999999999887889999999999999999999


Q ss_pred             cC
Q 022947          286 VS  287 (289)
Q Consensus       286 ~~  287 (289)
                      +|
T Consensus       240 ~~  241 (314)
T 1mld_A          240 DA  241 (314)
T ss_dssp             HH
T ss_pred             cC
Confidence            98

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=100.00  E-value=6.5e-54  Score=402.33  Aligned_cols=238  Identities=27%  Similarity=0.358  Sum_probs=206.9

Q ss_pred             CCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCC-ceEEEEecCCCHHhhhCCCCEE
Q 022947           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN-AVVRGFLGQQQLEDALTGMDIV  118 (289)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~-~~v~~~~~t~d~~eal~~aDiV  118 (289)
                      .|++++||+|||++|+||+++++.++..|+..||+|+|+++  ++|+++||.|.... .++..   ++|++++++|||+|
T Consensus         4 ~~~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~---t~d~~~al~dADvV   80 (343)
T 3fi9_A            4 SYLTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTF---TSDIKEALTDAKYI   80 (343)
T ss_dssp             CCSCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEE---ESCHHHHHTTEEEE
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEE---cCCHHHHhCCCCEE
Confidence            46778899999977999999999999999888999999987  58899999998531 23442   45778999999999


Q ss_pred             EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcE-EEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeeccHH
Q 022947          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVV  197 (289)
Q Consensus       119 Iitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~ai-viv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t~lds~  197 (289)
                      |+++|.|+++|++|.|++..|+++++++++.++++||+++ ++++|||+|++||++    ++.++||++||+|+|.||++
T Consensus        81 vitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsNPvd~~t~i~----~k~sg~p~~rv~g~t~LDs~  156 (343)
T 3fi9_A           81 VSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNPADITGLVT----LIYSGLKPSQVTTLAGLDST  156 (343)
T ss_dssp             EECCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSSSHHHHHHHH----HHHHTCCGGGEEEECCHHHH
T ss_pred             EEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecCchHHHHHHH----HHHcCCCcceEEEecCcHHH
Confidence            9999999999999999999999999999999999999996 899999999999875    45668999999999999999


Q ss_pred             HHHHHHHHHcCCCCccee-eeEEcccCCCeeeeecccccCCC----------CCChhhHHHHHHHHHhhhHHHhhhcCCC
Q 022947          198 RANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPSC----------SLTPTEIDYLTDRIQNGGTEVVEAKTGA  266 (289)
Q Consensus       198 R~~~~lA~~l~v~~~~V~-~~V~G~hg~~~~vp~~S~~~v~~----------~~~~~~~~~i~~~v~~~g~~i~~~k~g~  266 (289)
                      |++++||+++|++|++|+ ++||||||+ ++||+||++++++          .+++++|++|.++|+++|++|+++|+  
T Consensus       157 R~~~~la~~l~v~~~~v~~~~ViGeHgd-s~vp~~S~a~v~G~pl~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~kg--  233 (343)
T 3fi9_A          157 RLQSELAKHFGIKQSLVTNTRTYGGHGE-QMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLRG--  233 (343)
T ss_dssp             HHHHHHHHHHTSCGGGEECCCEEESSGG-GEEECGGGCEETTEEGGGTTTBTTBCHHHHHHHHHHHHTHHHHHHHHHS--
T ss_pred             HHHHHHHHHhCcCHHHcccceEEEcCCC-ceeeeeecceECCEEhhHhccccCCCHHHHHHHHHHHHhhhHHHHHccC--
Confidence            999999999999999997 899999998 9999999998853          14667899999999999999999883  


Q ss_pred             CcchHHHHHHHHHHHHHHhcCCC
Q 022947          267 GSATLSMCRHMLLPSLPMLVSEA  289 (289)
Q Consensus       267 g~t~~s~A~a~~~~~~ail~~~~  289 (289)
                      +++++|+|.|+++++++|++|+.
T Consensus       234 ~ss~~s~A~a~~~~~~ail~d~~  256 (343)
T 3fi9_A          234 RSSFQSPSYVSIEMIRAAMGGEA  256 (343)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTSSC
T ss_pred             CCcHHhHHHHHHHHHHHHHhCCC
Confidence            35678999999999999999973

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=100.00  E-value=1.5e-53  Score=395.67  Aligned_cols=233  Identities=26%  Similarity=0.443  Sum_probs=203.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccC--CceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~--~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      |||+|||+ |.||+++++.|+..+++++|+|+|+++  ++|+++||.|...  ....+.. .+++ +++++|||+||+++
T Consensus         1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~-~~~~-~~a~~~aDvVii~a   77 (314)
T 3nep_X            1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVT-GTND-YGPTEDSDVCIITA   77 (314)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEE-EESS-SGGGTTCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEE-ECCC-HHHhCCCCEEEECC
Confidence            79999998 999999999999999889999999988  6889999999752  1122222 1234 48999999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEee-eccHHHHHH
Q 022947          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANT  201 (289)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t-~lds~R~~~  201 (289)
                      |.|++||++|.|++..|+++++++++.|+++||+++++++|||+|++||++    ++.++||++||||+| .||++|+++
T Consensus        78 g~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd~~t~~~----~k~~g~p~~rviG~~t~LD~~R~~~  153 (314)
T 3nep_X           78 GLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLDVMTYVA----YEASGFPTNRVMGMAGVLDTGRFRS  153 (314)
T ss_dssp             CC-------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCSSHHHHHHHH----HHHHTCCGGGEEECCHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCCchhHHHHHH----HHhcCCChHHEEeecCchHHHHHHH
Confidence            999999999999999999999999999999999999999999999999875    456789999999996 999999999


Q ss_pred             HHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCC-----CCChhhHHHHHHHHHhhhHHHhhhcCCCCcchHHHHHH
Q 022947          202 FVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-----SLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMCRH  276 (289)
Q Consensus       202 ~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~-----~~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~~s~A~a  276 (289)
                      ++|+++|++|++|+++||||||+ |+||+||++++.+     .++++++++|.++|+++|++|+++| |+ +++||+|.+
T Consensus       154 ~la~~lgv~~~~v~~~ViG~Hg~-t~vp~~S~~~v~g~p~~~~~~~~~~~~i~~~v~~~g~eIi~~k-g~-sa~~a~a~a  230 (314)
T 3nep_X          154 FIAEELDVSVRDVQALLMGGHGD-TMVPLPRYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVDLM-GT-SAWYAPGAA  230 (314)
T ss_dssp             HHHHHHTCCGGGEEEEEEESSGG-GEEEEEEEEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHH-SS-CCCHHHHHH
T ss_pred             HHHHHhCcCHHHeEEEEECCCCC-cEEeeeecCeECcEehhhccCHHHHHHHHHHHHHhHHHHHhcc-CC-cHHHHHHHH
Confidence            99999999999999999999998 9999999999864     2567778999999999999999998 55 899999999


Q ss_pred             HHHHHHHHhcCCC
Q 022947          277 MLLPSLPMLVSEA  289 (289)
Q Consensus       277 ~~~~~~ail~~~~  289 (289)
                      +++|+++|++|+.
T Consensus       231 ~~~~~~ail~~~~  243 (314)
T 3nep_X          231 AAEMTEAILKDNK  243 (314)
T ss_dssp             HHHHHHHHHHTCC
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999999863

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=100.00  E-value=8.4e-54  Score=399.04  Aligned_cols=233  Identities=24%  Similarity=0.380  Sum_probs=194.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCC-ceEEEEecCCCHHhhhCCCCEEEEc
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN-AVVRGFLGQQQLEDALTGMDIVIIP  121 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~-~~v~~~~~t~d~~eal~~aDiVIit  121 (289)
                      .++||+|||+ |+||+++++.|+..++++||+|+|+++  ++|+++||.|.... ..++..  ++++ ++++|||+||++
T Consensus         8 ~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~--~~~~-~a~~~aDiVvi~   83 (326)
T 3vku_A            8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIY--SAEY-SDAKDADLVVIT   83 (326)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEE--ECCG-GGGTTCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEE--ECcH-HHhcCCCEEEEC
Confidence            4579999998 999999999999999999999999987  68899999997532 244433  2354 889999999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHH
Q 022947          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRAN  200 (289)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R~~  200 (289)
                      +|.|++||++|.|++.+|+++++++++.|+++||+++++++|||+|++|+++    ++.++||++||||+ |.||++|++
T Consensus        84 ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtNPvdi~t~~~----~k~~g~p~~rviG~gt~LD~~R~~  159 (326)
T 3vku_A           84 AGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDILTYAT----WKLSGFPKNRVVGSGTSLDTARFR  159 (326)
T ss_dssp             CCCC----------------CHHHHHHHHHTTTCCSEEEECSSSHHHHHHHH----HHHHCCCGGGEEECTTHHHHHHHH
T ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccCchHHHHHHH----HHhcCCCHHHeeeecccCcHHHHH
Confidence            9999999999999999999999999999999999999999999999998654    66789999999999 999999999


Q ss_pred             HHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCCC-C----------ChhhHHHHHHHHHhhhHHHhhhcCCCCcc
Q 022947          201 TFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS-L----------TPTEIDYLTDRIQNGGTEVVEAKTGAGSA  269 (289)
Q Consensus       201 ~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~-~----------~~~~~~~i~~~v~~~g~~i~~~k~g~g~t  269 (289)
                      +++|+++|++|++|+++||||||+ |+||+||++++.+. +          +++++++|.++|+++|++|++.|   |+|
T Consensus       160 ~~la~~lgv~~~~V~~~ViGeHGd-t~vp~~S~a~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~k---G~t  235 (326)
T 3vku_A          160 QSIAKMVNVDARSVHAYIMGEHGD-TEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRNKAYEIIKLK---GAT  235 (326)
T ss_dssp             HHHHHHHTSCGGGEECCEEBSSST-TCEECGGGCEETTEEHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHH---SCC
T ss_pred             HHHHHHhCCCHHHCeEEEEcCCCC-eeEEeeeccccCCEEHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhcC---CCc
Confidence            999999999999999999999998 99999999998641 1          45678999999999999999966   789


Q ss_pred             hHHHHHHHHHHHHHHhcCCC
Q 022947          270 TLSMCRHMLLPSLPMLVSEA  289 (289)
Q Consensus       270 ~~s~A~a~~~~~~ail~~~~  289 (289)
                      +||+|.|+++|+++|++|+.
T Consensus       236 ~~a~a~a~~~~~~ail~~~~  255 (326)
T 3vku_A          236 FYGIATALARISKAILNDEN  255 (326)
T ss_dssp             CHHHHHHHHHHHHHHHTTCC
T ss_pred             hHHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999863

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=100.00  E-value=5.4e-53  Score=393.49  Aligned_cols=237  Identities=31%  Similarity=0.510  Sum_probs=207.4

Q ss_pred             CCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccC----CceEEEEecCCCHHhhhCC
Q 022947           41 KGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----NAVVRGFLGQQQLEDALTG  114 (289)
Q Consensus        41 ~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~----~~~v~~~~~t~d~~eal~~  114 (289)
                      |+.++++||+|||| |.||+++++.|+..++. +|+|+|+++  .+++++||.|...    ..++..   ++|+ ++++|
T Consensus         2 ~~~m~~~kI~viGa-G~vG~~~a~~l~~~~~~-~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~---t~d~-~a~~~   75 (324)
T 3gvi_A            2 PGSMARNKIALIGS-GMIGGTLAHLAGLKELG-DVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTG---ANDY-AAIEG   75 (324)
T ss_dssp             ----CCCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE---ESSG-GGGTT
T ss_pred             CCCCcCCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEE---eCCH-HHHCC
Confidence            45566789999998 99999999999999986 999999988  5788999999742    234443   3576 89999


Q ss_pred             CCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEee-e
Q 022947          115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-M  193 (289)
Q Consensus       115 aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t-~  193 (289)
                      ||+||+++|.|+++|++|.|++.+|+++++++++.|+++||+++++++|||+|++|+++    ++.+++|++||||+| .
T Consensus        76 aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtNPvd~~t~~~----~k~sg~p~~rviG~~~~  151 (324)
T 3gvi_A           76 ADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNPLDAMVWAL----QKFSGLPAHKVVGMAGV  151 (324)
T ss_dssp             CSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEECCHH
T ss_pred             CCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCCCcHHHHHHH----HHhcCCCHHHEEeecCc
Confidence            99999999999999999999999999999999999999999999999999999999764    567799999999997 8


Q ss_pred             ccHHHHHHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCC----------CCChhhHHHHHHHHHhhhHHHhhhc
Q 022947          194 LDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----------SLTPTEIDYLTDRIQNGGTEVVEAK  263 (289)
Q Consensus       194 lds~R~~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~----------~~~~~~~~~i~~~v~~~g~~i~~~k  263 (289)
                      ||++|++++||+++|+++++|+++||||||+ ++||+||++++.+          .++++++++|.++++++|++|+++|
T Consensus       152 LD~~R~~~~la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~~  230 (324)
T 3gvi_A          152 LDSARFRYFLSEEFNVSVEDVTVFVLGGHGD-SMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIVGLL  230 (324)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGEECCEEECSGG-GEEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhCcCHHHCeEEEEcCCCC-ceeeehhhCeECCEEHHHhhhccCCCHHHHHHHHHHHHHhHHHHHHhc
Confidence            9999999999999999999999999999998 9999999999854          1366778999999999999999988


Q ss_pred             CCCCcchHHHHHHHHHHHHHHhcCCC
Q 022947          264 TGAGSATLSMCRHMLLPSLPMLVSEA  289 (289)
Q Consensus       264 ~g~g~t~~s~A~a~~~~~~ail~~~~  289 (289)
                       |+|+++||+|.|+++++++|++|+.
T Consensus       231 -gkgsa~~~~a~a~~~~~~ail~~~~  255 (324)
T 3gvi_A          231 -KTGSAFYAPAASAIQMAESYLKDKK  255 (324)
T ss_dssp             -SSCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred             -CCCcHHHHHHHHHHHHHHHHHcCCC
Confidence             8899999999999999999999973

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=100.00  E-value=4.2e-53  Score=394.53  Aligned_cols=233  Identities=26%  Similarity=0.345  Sum_probs=210.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCC--ceEEEEecCCCHHhhhCCCCEEEE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIVII  120 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~--~~v~~~~~t~d~~eal~~aDiVIi  120 (289)
                      +++||+|||+ |+||+++++.|+..+++++|+|+|+++  ++++++||.|....  ..++.+  ++++ ++++|||+||+
T Consensus         4 ~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~--~~~~-~a~~~aDvVvi   79 (326)
T 3pqe_A            4 HVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTS--YGTY-EDCKDADIVCI   79 (326)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEE--EECG-GGGTTCSEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEE--eCcH-HHhCCCCEEEE
Confidence            4679999998 999999999999999889999999987  68899999997422  244443  3355 79999999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHH
Q 022947          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRA  199 (289)
Q Consensus       121 tag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R~  199 (289)
                      ++|.|+++|++|.|++..|+++++++++.++++||+++++++|||+|++|+++    ++.++||++||||+ |.||++|+
T Consensus        80 ~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtNPvd~~t~~~----~k~~g~p~~rviG~gt~LD~~R~  155 (326)
T 3pqe_A           80 CAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPVDILTYAT----WKFSGLPKERVIGSGTTLDSARF  155 (326)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH----HHHHCCCGGGEEECTTHHHHHHH
T ss_pred             ecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCChHHHHHHHH----HHhcCCCHHHEEeeccccHHHHH
Confidence            99999999999999999999999999999999999999999999999999764    56679999999999 99999999


Q ss_pred             HHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCCC-----------CChhhHHHHHHHHHhhhHHHhhhcCCCCc
Q 022947          200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS-----------LTPTEIDYLTDRIQNGGTEVVEAKTGAGS  268 (289)
Q Consensus       200 ~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~-----------~~~~~~~~i~~~v~~~g~~i~~~k~g~g~  268 (289)
                      ++++|+++|++|++|+++||||||+ |+||+||++++.+.           ++++++++|.++|+++|++|++.|   |+
T Consensus       156 ~~~la~~lgv~~~~V~~~V~GeHG~-t~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~k---G~  231 (326)
T 3pqe_A          156 RFMLSEYFGAAPQNVCAHIIGEHGD-TELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKK---GA  231 (326)
T ss_dssp             HHHHHHHHTCCGGGEECCEEBSSST-TCEECGGGCEETTEEHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHHH---SC
T ss_pred             HHHHHHHhCCCHHHceeeeeecCCC-ceeeeeeeeeECCEEHHHHhhcccCCCHHHHHHHHHHHHhhhheeeeCC---CC
Confidence            9999999999999999999999998 99999999998641           156678999999999999999976   78


Q ss_pred             chHHHHHHHHHHHHHHhcCCC
Q 022947          269 ATLSMCRHMLLPSLPMLVSEA  289 (289)
Q Consensus       269 t~~s~A~a~~~~~~ail~~~~  289 (289)
                      |+||+|.|+++++++|++|+.
T Consensus       232 t~~a~a~a~~~~~~ail~~~~  252 (326)
T 3pqe_A          232 TYYGVAMSLARITKAILHNEN  252 (326)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCC
T ss_pred             cHHHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999863

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=100.00  E-value=8.8e-53  Score=387.34  Aligned_cols=225  Identities=23%  Similarity=0.352  Sum_probs=205.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccC----CceEEEEecCCCHHhhhCCCCEEEE
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----NAVVRGFLGQQQLEDALTGMDIVII  120 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~----~~~v~~~~~t~d~~eal~~aDiVIi  120 (289)
                      |||+|||| |.+|+++++.|+..+++++|+|+|+++  ++++++|+.|...    ..++..   ++| +++++|||+||+
T Consensus         1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~---t~d-~~a~~~aDiVVi   75 (294)
T 1oju_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG---GAD-YSLLKGSEIIVV   75 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEE---ESC-GGGGTTCSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEE---eCC-HHHhCCCCEEEE
Confidence            69999999 999999999999999889999999988  5778899998752    223432   346 589999999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHH
Q 022947          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRA  199 (289)
Q Consensus       121 tag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R~  199 (289)
                      ++|.|+++|++|.|++.+|+++++++++.|+++||+++++++|||+|++|+++    ++.++||++||||+ |.||++|+
T Consensus        76 aag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsNPvd~~t~~~----~k~~g~p~~rviG~gt~LD~~R~  151 (294)
T 1oju_A           76 TAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYIM----WKESGKPRNEVFGMGNQLDSQRL  151 (294)
T ss_dssp             CCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHHHHH----HHHSCCCTTSEEECSHHHHHHHH
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcchHHHHHH----HHhcCCCHHHEeecccccHHHHH
Confidence            99999999999999999999999999999999999999999999999999654    66789999999999 79999999


Q ss_pred             HHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCCCCChhhHHHHHHHHHhhhHHHhhhcCCCCcchHHHHHHHHH
Q 022947          200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMCRHMLL  279 (289)
Q Consensus       200 ~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~~s~A~a~~~  279 (289)
                      +++|| ++|++|++ +++||||||+ ++||+||++++.+ .+  ++++|.++|+++|++|++.|   |+++||+|.|+++
T Consensus       152 ~~~la-~l~v~~~~-~~~V~G~Hg~-t~vp~~s~~~v~g-~~--~~~~~~~~v~~~g~eii~~k---G~t~~~~a~a~~~  222 (294)
T 1oju_A          152 KERLY-NAGARNIR-RAWIIGEHGD-SMFVAKSLADFDG-EV--DWEAVENDVRFVAAEVIKRK---GATIFGPAVAIYR  222 (294)
T ss_dssp             HHHHH-HTTCBSCC-CCCEEBCSST-TCEECGGGCCCBS-CC--CHHHHHHHHHTTHHHHHHHH---SSCCHHHHHHHHH
T ss_pred             HHHHH-HhCCCccC-ceEEEecCCC-ceeeecccceECC-cC--hHHHHHHHHHHHHHHHHHhc---CCcchHHHHHHHH
Confidence            99999 99999999 9999999998 9999999999854 22  68999999999999999976   6899999999999


Q ss_pred             HHHHHhcCCC
Q 022947          280 PSLPMLVSEA  289 (289)
Q Consensus       280 ~~~ail~~~~  289 (289)
                      |+++|++|+.
T Consensus       223 ~~~ail~~~~  232 (294)
T 1oju_A          223 MVKAVVEDTG  232 (294)
T ss_dssp             HHHHHHTTCC
T ss_pred             HHHHHHcCCC
Confidence            9999999863

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=100.00  E-value=1.6e-52  Score=390.07  Aligned_cols=234  Identities=33%  Similarity=0.535  Sum_probs=211.9

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccC----CceEEEEecCCCHHhhhCCCCE
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----NAVVRGFLGQQQLEDALTGMDI  117 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~----~~~v~~~~~t~d~~eal~~aDi  117 (289)
                      ++++||+|||+ |.||+++++.|+..++. +|+|+|+++  ++++++||.|...    ...+..   ++|+ ++++|||+
T Consensus         3 m~~~kI~iiGa-G~vG~~~a~~l~~~~~~-~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~---t~d~-~a~~~aDv   76 (321)
T 3p7m_A            3 MARKKITLVGA-GNIGGTLAHLALIKQLG-DVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRG---TNDY-KDLENSDV   76 (321)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEE---ESCG-GGGTTCSE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCc-eEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEE---cCCH-HHHCCCCE
Confidence            34679999998 99999999999999987 999999998  5788999999742    234442   3465 89999999


Q ss_pred             EEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEee-eccH
Q 022947          118 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDV  196 (289)
Q Consensus       118 VIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t-~lds  196 (289)
                      ||+++|.|+++|++|.|++.+|+++++++++.|+++||+++++++|||+|++|+++    ++.+++|++||||+| .||+
T Consensus        77 VIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd~~t~~~----~k~sg~p~~rviG~~~~LD~  152 (321)
T 3p7m_A           77 VIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITNPLDIMVNML----QKFSGVPDNKIVGMAGVLDS  152 (321)
T ss_dssp             EEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEEECHHHHH
T ss_pred             EEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecCchHHHHHHH----HHhcCCCHHHEEeeccchHH
Confidence            99999999999999999999999999999999999999999999999999999654    667899999999997 9999


Q ss_pred             HHHHHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCCC----------CChhhHHHHHHHHHhhhHHHhhhcCCC
Q 022947          197 VRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS----------LTPTEIDYLTDRIQNGGTEVVEAKTGA  266 (289)
Q Consensus       197 ~R~~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~----------~~~~~~~~i~~~v~~~g~~i~~~k~g~  266 (289)
                      +|++++||+++|++|++|+++||||||+ ++||+||++++.+.          +++++++++.++++++|++|+++| |+
T Consensus       153 ~R~~~~la~~l~v~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~~-g~  230 (321)
T 3p7m_A          153 ARFRTFLADELNVSVQQVQAYVMGGHGD-TMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALL-KT  230 (321)
T ss_dssp             HHHHHHHHHHHTCCGGGEECCEEECSGG-GEEECTTTCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHH-SS
T ss_pred             HHHHHHHHHHhCcCHHHceEeeecCcCC-ceeeeeeeceECCEehhhhccccCCCHHHHHHHHHHHHhhhHHHHHhc-CC
Confidence            9999999999999999999999999998 99999999998541          367788999999999999999988 78


Q ss_pred             CcchHHHHHHHHHHHHHHhcCCC
Q 022947          267 GSATLSMCRHMLLPSLPMLVSEA  289 (289)
Q Consensus       267 g~t~~s~A~a~~~~~~ail~~~~  289 (289)
                      |+++||+|.|+++++++|++|+.
T Consensus       231 gsa~~~~a~a~~~~~~ail~~~~  253 (321)
T 3p7m_A          231 GSAYYAPAAAGIQMAESFLKDKK  253 (321)
T ss_dssp             SCCCHHHHHHHHHHHHHHHTTCC
T ss_pred             CChHHHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999973

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=100.00  E-value=1e-52  Score=390.27  Aligned_cols=233  Identities=30%  Similarity=0.486  Sum_probs=211.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCC--C--chhHHhhhhccc----CCceEEEEecCCCHHhhhCCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV--N--TPGVTADISHMD----TNAVVRGFLGQQQLEDALTGMD  116 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~--~--~~g~~~DL~~~~----~~~~v~~~~~t~d~~eal~~aD  116 (289)
                      +.+||+|||+ |.+|+++++.|+..++ ++|+|+|++  +  .+|+++||.|..    ...++..   ++|+ ++++|||
T Consensus         7 ~~~kv~ViGa-G~vG~~ia~~l~~~g~-~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~---t~d~-~a~~~aD   80 (315)
T 3tl2_A            7 KRKKVSVIGA-GFTGATTAFLLAQKEL-ADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIG---TSDY-ADTADSD   80 (315)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC-CEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEE---ESCG-GGGTTCS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEE---cCCH-HHhCCCC
Confidence            3569999998 9999999999999998 899999998  4  578889999874    2234443   3465 8999999


Q ss_pred             EEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eecc
Q 022947          117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLD  195 (289)
Q Consensus       117 iVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~ld  195 (289)
                      +||+++|.|++||++|.|++.+|+++++++++.++++||+++++++|||+|++||++    ++.+|||++||||+ |.||
T Consensus        81 vVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsNPvd~~t~~~----~k~sg~p~~rviG~gt~LD  156 (315)
T 3tl2_A           81 VVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNPVDAMTYSV----FKEAGFPKERVIGQSGVLD  156 (315)
T ss_dssp             EEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEECCHHHH
T ss_pred             EEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCChHHHHHHHH----HHhcCCChHHEEeeccCcH
Confidence            999999999999999999999999999999999999999999999999999999875    45679999999999 9999


Q ss_pred             HHHHHHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCC-----CCChhhHHHHHHHHHhhhHHHhhhcCCCCcch
Q 022947          196 VVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-----SLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT  270 (289)
Q Consensus       196 s~R~~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~-----~~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~  270 (289)
                      ++|+++++|+++|+++++|+++||||||+ ++||+||++++.+     .++++++++|.++|+++|++|++++ |||+++
T Consensus       157 ~~R~~~~la~~lgv~~~~v~~~viG~Hg~-t~vp~~S~~~v~g~p~~~~~~~~~~~~i~~~v~~~g~eii~~~-~kgst~  234 (315)
T 3tl2_A          157 TARFRTFIAQELNLSVKDITGFVLGGHGD-DMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIVGLL-GNGSAY  234 (315)
T ss_dssp             HHHHHHHHHHHHTCCGGGEECCEEBCSGG-GCEECGGGCEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHH-SSSCCC
T ss_pred             HHHHHHHHHHHhCcCHHHceeeEecCCCC-cceeecccCeECCEEHHHhCCHHHHHHHHHHHHHHHHHHHHhc-CCCcch
Confidence            99999999999999999999999999998 9999999999864     2577788999999999999999974 679999


Q ss_pred             HHHHHHHHHHHHHHhcCCC
Q 022947          271 LSMCRHMLLPSLPMLVSEA  289 (289)
Q Consensus       271 ~s~A~a~~~~~~ail~~~~  289 (289)
                      ||+|.|+++|+++|++|+.
T Consensus       235 ~a~a~a~~~~~~ail~~~~  253 (315)
T 3tl2_A          235 YAPAASLVEMTEAILKDQR  253 (315)
T ss_dssp             HHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999863

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=100.00  E-value=1.6e-51  Score=384.05  Aligned_cols=244  Identities=85%  Similarity=1.264  Sum_probs=222.9

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      .++|||+||||+|+||++++..|+..+++.||+|+|+++..++++||.+......+..+.+++|++++++|||+||+++|
T Consensus         6 ~~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag   85 (326)
T 1smk_A            6 APGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAG   85 (326)
T ss_dssp             --CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCC
Confidence            45689999996699999999999998877899999998767788999986543355544445678899999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHH
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFV  203 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t~lds~R~~~~l  203 (289)
                      .|+++|++|.+++..|+++++++++.+++++|+++++++|||+|++|+++++++++.++||++||||+|.||+.|++++|
T Consensus        86 ~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~SNPv~~~~~~~t~~~~~~~~~p~~rviG~~~Ld~~r~~~~l  165 (326)
T 1smk_A           86 VPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFV  165 (326)
T ss_dssp             CCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHHHHHTCCCTTSEEECCHHHHHHHHHHH
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCchHHHHHHHHHHHHHccCCCcccEEEEeehHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCcceeeeEEccc-CCCeeeeecccccCCCCCChhhHHHHHHHHHhhhHHHhhhcCCCCcchHHHHHHHHHHHH
Q 022947          204 AEVLGLDPREVDVPVVGGH-AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMCRHMLLPSL  282 (289)
Q Consensus       204 A~~l~v~~~~V~~~V~G~h-g~~~~vp~~S~~~v~~~~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~~s~A~a~~~~~~  282 (289)
                      |+++|++|++|+++||||| |+ +++|+||++++...+++++++++.++++++|++|++.|.|+|+++||+|.+++++++
T Consensus       166 a~~l~v~~~~v~~~v~G~H~G~-~~~p~~s~~~v~~~~~~~~~~~~~~~v~~~g~eii~~k~~~gs~~~~~a~a~~~~~~  244 (326)
T 1smk_A          166 AEVLGLDPRDVDVPVVGGHAGV-TILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFAD  244 (326)
T ss_dssp             HHHHTCCGGGCBCCEEECSSGG-GEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHH
T ss_pred             HHHhCcChhheEEEEecccCCc-eEEEecccCeecCcCCHHHHHHHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHH
Confidence            9999999999999999999 76 999999999986668888899999999999999999887789999999999999999


Q ss_pred             HH---hcCC
Q 022947          283 PM---LVSE  288 (289)
Q Consensus       283 ai---l~~~  288 (289)
                      +|   ++|+
T Consensus       245 ai~~~~~~~  253 (326)
T 1smk_A          245 ACLRGLRGD  253 (326)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHhCCC
Confidence            99   8886

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=100.00  E-value=9.1e-52  Score=387.75  Aligned_cols=244  Identities=26%  Similarity=0.351  Sum_probs=203.8

Q ss_pred             cccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCCcc-----EEEEEeCCC----chhHHhhhhcccCCceEEEEecCCCH
Q 022947           38 CRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDTNAVVRGFLGQQQL  108 (289)
Q Consensus        38 ~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~-----eI~LvD~~~----~~g~~~DL~~~~~~~~v~~~~~t~d~  108 (289)
                      ++-++.+++.||+|+||+|.||++++++|++.+++.     ||+|+|+++    .+|.++||+|+........+. +++.
T Consensus        16 ~~~~~s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~-~~~~   94 (345)
T 4h7p_A           16 TQGPGSMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVV-TADP   94 (345)
T ss_dssp             ------CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEE-ESCH
T ss_pred             ccCCCCCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEE-cCCh
Confidence            455556667799999988999999999999987764     999999987    368899999987544444433 3466


Q ss_pred             HhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCc
Q 022947          109 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR  187 (289)
Q Consensus       109 ~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~k  187 (289)
                      +++++|||+||++||.||+|||+|+|++..|+++++++++.|.+++ |+++|+++|||+|++||++.   ++.+|+++.|
T Consensus        95 ~~a~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~~~~i~~---~~~~g~~~~r  171 (345)
T 4h7p_A           95 RVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALILL---KSAQGKLNPR  171 (345)
T ss_dssp             HHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHH---HHTTTCSCGG
T ss_pred             HHHhCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcchHHHHHH---HHccCCCCcc
Confidence            7999999999999999999999999999999999999999999997 89999999999999998753   4466776666


Q ss_pred             EEEe-eeccHHHHHHHHHHHcCCCCccee-eeEEcccCCCeeeeecccccCCCC-----CChhhH-HHHHHHHHhhhHHH
Q 022947          188 LLGV-TMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPSCS-----LTPTEI-DYLTDRIQNGGTEV  259 (289)
Q Consensus       188 viG~-t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg~~~~vp~~S~~~v~~~-----~~~~~~-~~i~~~v~~~g~~i  259 (289)
                      +||. |.||++|++++||+++|++|++|+ .+||||||+ ++||+||++++++.     ++++.+ +++.++++++|++|
T Consensus       172 ~i~~~t~LDs~R~~~~la~~~~v~~~~V~~~~V~G~HG~-t~vp~~s~a~v~g~~~~~~~~~~~~~~~~~~~v~~~g~eI  250 (345)
T 4h7p_A          172 HVTAMTRLDHNRALSLLARKAGVPVSQVRNVIIWGNHSS-TQVPDTDSAVIGTTPAREAIKDDALDDDFVQVVRGRGAEI  250 (345)
T ss_dssp             GEEECCHHHHHHHHHHHHHHHTSCGGGEECCEEEBCSST-TCEEECTTCEETTEEGGGGCCC------HHHHHHHHHHHH
T ss_pred             eeeeccchhHHHHHHHHHHHHCcChhheecceeecCCCC-eEEeeeccceECCccHHHhcchhhHHHHHHHHHHhhhhhh
Confidence            6655 999999999999999999999998 558999998 99999999998642     333333 58999999999999


Q ss_pred             hhhcCCCCcchHHHHHHHHHHHHHHhcCC
Q 022947          260 VEAKTGAGSATLSMCRHMLLPSLPMLVSE  288 (289)
Q Consensus       260 ~~~k~g~g~t~~s~A~a~~~~~~ail~~~  288 (289)
                      ++.|+  ++++||+|.|+++++++|++|+
T Consensus       251 i~~kg--~ss~~s~a~a~~~~~~~~l~~~  277 (345)
T 4h7p_A          251 IQLRG--LSSAMSAAKAAVDHVHDWIHGT  277 (345)
T ss_dssp             HHHHS--SCCCHHHHHHHHHHHHHHHHCC
T ss_pred             hhcCC--CcchhhHHHHHHHHHHHHhcCC
Confidence            99983  5788999999999999999985

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=100.00  E-value=3.6e-52  Score=388.03  Aligned_cols=225  Identities=20%  Similarity=0.258  Sum_probs=201.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      ..+||+|||+ |.||+++++.++..++++||+|+|+++  .+|+++||.|...+.....+..++|| ++++|||+||+++
T Consensus        20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~-~~~~daDiVIita   97 (330)
T 3ldh_A           20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDY-SVSAGSKLVVITA   97 (330)
T ss_dssp             CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSS-CSCSSCSEEEECC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCH-HHhCCCCEEEEeC
Confidence            4579999999 999999999999999999999999987  68899999997432211111224577 5699999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHHH
Q 022947          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANT  201 (289)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R~~~  201 (289)
                      |.|+++|++|.|++.+|+++++++++.+++++|+++++++|||+|++|+++    ++.++||++||||+ |.||++|+++
T Consensus        98 G~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtNPvdi~t~~~----~k~sg~p~~rViG~gt~LDs~R~~~  173 (330)
T 3ldh_A           98 GARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPELGTDKNKQD----WKLSGLPMHRIIGSGCNLDSARFRY  173 (330)
T ss_dssp             SCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH----HHHHCCCGGGEECCTTHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCCccHHHHHHH----HHHhCCCHHHeecccCchhHHHHHH
Confidence            999999999999999999999999999999999999999999999999765    55679999999999 6999999999


Q ss_pred             HHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCCCCChhhH-HHHHHHHHhhhHHHhhhcCCCCcchHHHHH-----
Q 022947          202 FVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEI-DYLTDRIQNGGTEVVEAKTGAGSATLSMCR-----  275 (289)
Q Consensus       202 ~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~~~~~~~-~~i~~~v~~~g~~i~~~k~g~g~t~~s~A~-----  275 (289)
                      ++|+++|++|++|+++||||||+ ++||+||+          +| ++|.++|+++|++|+++|   |+++||+|.     
T Consensus       174 ~lA~~lgv~~~~V~~~V~G~Hg~-t~vp~~S~----------~~~~~~~~~v~~~g~eii~~k---g~t~~a~a~~~~~~  239 (330)
T 3ldh_A          174 LMGERLGVHSCLVIGWVIGQHGD-SVPSVWSG----------MWDAKLHKDVVDSAYEVIKLK---GYTSWAIGLVVSNP  239 (330)
T ss_dssp             HHHHHHTSCTTTCCEEECSSSST-TCCEEEEE----------EEETTEEHHHHHCCCTTSTTC---HHHHHHHHHTTHHH
T ss_pred             HHHHHhCCCHHHeEEEEEcCCCC-ceeeechh----------hHHHHHHHHHHHHHHHHHHcc---CCcceeeeeeccCc
Confidence            99999999999999999999998 99999998          23 688999999999999965   789999999     


Q ss_pred             ------------HHHHHHHHHhcCCC
Q 022947          276 ------------HMLLPSLPMLVSEA  289 (289)
Q Consensus       276 ------------a~~~~~~ail~~~~  289 (289)
                                  ++++|+++|++|+.
T Consensus       240 ~~~~~~~~~~~~a~~~~~~ail~~~~  265 (330)
T 3ldh_A          240 VDVLTYVAWKGCSVADLAQTIMKDLC  265 (330)
T ss_dssp             HTTSSSCSCTHHHHHHHHHHHHHTCC
T ss_pred             cchhhhhhhHHHHHHHHHHHHHcCCC
Confidence                        99999999999973

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=2.1e-50  Score=375.36  Aligned_cols=232  Identities=24%  Similarity=0.385  Sum_probs=198.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccC-CceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~-~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      ++||+|||| |+||+++++.|+..++++||+|+|+++  +++.++||.|... ...++...  ++ +++++|||+||+++
T Consensus         5 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~--~~-~~a~~~aDvVii~a   80 (318)
T 1ez4_A            5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS--GE-YSDCKDADLVVITA   80 (318)
T ss_dssp             BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE--CC-GGGGTTCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEE--CC-HHHhCCCCEEEECC
Confidence            479999999 999999999999999999999999987  6788999999752 23333332  34 58899999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHHH
Q 022947          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANT  201 (289)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R~~~  201 (289)
                      |.|+++|++|.|++.+|+++++++++.|+++||++|++++|||+|++|++    +++.+++|++||||+ |.||++|+++
T Consensus        81 g~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~----~~k~s~~p~~rviG~gt~LD~~R~~~  156 (318)
T 1ez4_A           81 GAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYA----TWKFSGFPKERVIGSGTSLDSSRLRV  156 (318)
T ss_dssp             CC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHH----HHHHHCCCGGGEEECTTHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCcHHHHHHH----HHHHcCCCHHHEEeccccchHHHHHH
Confidence            99999999999999999999999999999999999999999999999865    466779999999999 9999999999


Q ss_pred             HHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCCC----------CChhhHHHHHHHHHhhhHHHhhhcCCCCcchH
Q 022947          202 FVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS----------LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATL  271 (289)
Q Consensus       202 ~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~----------~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~~  271 (289)
                      ++|+++|++|++|+++||||||+ +++|+||++++.+.          +++++++++.++++++|++|++.|   |+++|
T Consensus       157 ~la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k---g~t~~  232 (318)
T 1ez4_A          157 ALGKQFNVDPRSVDAYIMGEHGD-SEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIINLK---GATFY  232 (318)
T ss_dssp             HHHHHHTCCGGGEECCEESSSSS-SCEECGGGCEETTEEHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH---SCCCH
T ss_pred             HHHHHhCcChhHEEEEEecccCC-ceEEEehhhcCCCeeHHHHhhccCCCHHHHHHHHHHHHHhhhhheeCC---CcchH
Confidence            99999999999999999999998 99999999987531          556678999999999999999965   68999


Q ss_pred             HHHHHHHHHHHHHhcCCC
Q 022947          272 SMCRHMLLPSLPMLVSEA  289 (289)
Q Consensus       272 s~A~a~~~~~~ail~~~~  289 (289)
                      ++|.++++++++|++|+.
T Consensus       233 ~~a~a~~~~~~ai~~~~~  250 (318)
T 1ez4_A          233 GIGTALMRISKAILRDEN  250 (318)
T ss_dssp             HHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHhCCC
Confidence            999999999999999863

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=100.00  E-value=4.4e-50  Score=372.02  Aligned_cols=231  Identities=23%  Similarity=0.393  Sum_probs=207.8

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccC-CceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~-~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      |||+|||| |+||+++++.|+..++++||+|+|+++  ++++++||.|... ...++...  ++ +++++|||+||+++|
T Consensus         1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~--~~-~~a~~~aD~Vii~ag   76 (310)
T 2xxj_A            1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWA--GS-YGDLEGARAVVLAAG   76 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEE--CC-GGGGTTEEEEEECCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEE--CC-HHHhCCCCEEEECCC
Confidence            69999998 999999999999999999999999987  6788999999752 12333332  35 488999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHHHH
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTF  202 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R~~~~  202 (289)
                      .|+++|++|.|++.+|+++++++++.|+++||++|++++|||+|++|+++    ++.+++|++||||+ |.||++|++++
T Consensus        77 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~----~k~s~~p~~rviG~gt~LD~~R~~~~  152 (310)
T 2xxj_A           77 VAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQVA----YALSGLPPGRVVGSGTILDTARFRAL  152 (310)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH----HHHHTCCGGGEEECTTHHHHHHHHHH
T ss_pred             CCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecCchHHHHHHH----HHHcCCCHHHEEecCcchhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999764    56679999999999 99999999999


Q ss_pred             HHHHcCCCCcceeeeEEcccCCCeeeeecccccCCCC------------CChhhHHHHHHHHHhhhHHHhhhcCCCCcch
Q 022947          203 VAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS------------LTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT  270 (289)
Q Consensus       203 lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~------------~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~  270 (289)
                      +|+++|+++++|+++||||||+ +++|+||++++.+.            ++++.++++.++++++|++|++.|   |+++
T Consensus       153 la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k---g~t~  228 (310)
T 2xxj_A          153 LAEYLRVAPQSVHAYVLGEHGD-SEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGK---GATY  228 (310)
T ss_dssp             HHHHHTSCGGGEEEEEEBCSST-TCEEEEEEEEETTEEHHHHHHHTTCCCCHHHHHHHHHHHHTHHHHHHHHH---SCCC
T ss_pred             HHHHhCcCHHHeEEEEecccCC-ccccchhhccCCCEEHHHHhhhcccCCCHHHHHHHHHHHHHhhHHHHhcc---CCcH
Confidence            9999999999999999999998 99999999987531            356678999999999999999965   6899


Q ss_pred             HHHHHHHHHHHHHHhcCCC
Q 022947          271 LSMCRHMLLPSLPMLVSEA  289 (289)
Q Consensus       271 ~s~A~a~~~~~~ail~~~~  289 (289)
                      |++|.++++++++|++|+.
T Consensus       229 ~~~a~a~~~~~~ai~~~~~  247 (310)
T 2xxj_A          229 YGIGAGLARLVRAILTDEK  247 (310)
T ss_dssp             HHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999863

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=100.00  E-value=4.4e-50  Score=374.35  Aligned_cols=233  Identities=24%  Similarity=0.382  Sum_probs=203.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccC-CceEEEEecCCCHHhhhCCCCEEEEc
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIP  121 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~-~~~v~~~~~t~d~~eal~~aDiVIit  121 (289)
                      +++||+|||| |+||+++++.|+..++++||+|+|+++  +++.++||.|... ...++...  ++ +++++|||+||++
T Consensus         8 ~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~--~~-~~a~~~aDvVii~   83 (326)
T 2zqz_A            8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYS--AE-YSDAKDADLVVIT   83 (326)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE--CC-GGGGGGCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEE--CC-HHHhCCCCEEEEc
Confidence            3479999999 999999999999999999999999987  6788999999752 22333332  34 5889999999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHH
Q 022947          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRAN  200 (289)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R~~  200 (289)
                      +|.|+++|++|.|++.+|+++++++++.|+++||++|++++|||+|++|++    +++.+++|++||||+ |.||++|++
T Consensus        84 ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~----~~k~s~~p~~rviG~gt~LD~~R~~  159 (326)
T 2zqz_A           84 AGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDILTYA----TWKLSGFPKNRVVGSGTSLDTARFR  159 (326)
T ss_dssp             CCCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHH----HHHHHCCCGGGEEECTTHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHH----HHHHcCCCHHHEEEccccchHHHHH
Confidence            999999999999999999999999999999999999999999999999865    466779999999999 999999999


Q ss_pred             HHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCCC-----------CChhhHHHHHHHHHhhhHHHhhhcCCCCcc
Q 022947          201 TFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS-----------LTPTEIDYLTDRIQNGGTEVVEAKTGAGSA  269 (289)
Q Consensus       201 ~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~-----------~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t  269 (289)
                      +++|+++|++|++|+++||||||+ +++|+||++++.+.           +++++++++.++++++|++|++.|   |++
T Consensus       160 ~~la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~e~~~~~~~~~~~~~~~i~~~v~~~g~eii~~k---G~t  235 (326)
T 2zqz_A          160 QSIAEMVNVDARSVHAYIMGEHGD-TEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLK---GAT  235 (326)
T ss_dssp             HHHHHHHTCCGGGEECCEEBSSST-TCEECGGGCEETTEEHHHHHHHCTTSCHHHHHHHHHHHHTHHHHHHHHH---SCC
T ss_pred             HHHHHHhCCChhheEEEEecccCC-ceEeehhhceECCEEHHHhhcccccCCHHHHHHHHHHHHHhHHHHHHcC---CCc
Confidence            999999999999999999999998 99999999987531           455667899999999999999965   689


Q ss_pred             hHHHHHHHHHHHHHHhcCCC
Q 022947          270 TLSMCRHMLLPSLPMLVSEA  289 (289)
Q Consensus       270 ~~s~A~a~~~~~~ail~~~~  289 (289)
                      +|++|.++++++++|++|+.
T Consensus       236 ~~~~a~aa~~~~~ai~~~~~  255 (326)
T 2zqz_A          236 FYGIATALARISKAILNDEN  255 (326)
T ss_dssp             CHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999863

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=100.00  E-value=1.5e-49  Score=375.49  Aligned_cols=228  Identities=21%  Similarity=0.225  Sum_probs=192.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccE---EEEEeCCC------chhHHhhhhcccC-C-ceEEEEecCCCHHhhhC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSV---LHLYDVVN------TPGVTADISHMDT-N-AVVRGFLGQQQLEDALT  113 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~e---I~LvD~~~------~~g~~~DL~~~~~-~-~~v~~~~~t~d~~eal~  113 (289)
                      +++||+||||+|+||+++++.|+.+++++|   |+|+|.+.      ++|+++||+|+.. . ..+...  + +.+++++
T Consensus        31 ~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~--~-~~y~~~~  107 (375)
T 7mdh_A           31 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIG--I-DPYEVFE  107 (375)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEE--S-CHHHHTT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEe--c-CCHHHhC
Confidence            467999999779999999999999999877   77766543      4789999999873 1 233432  3 3458999


Q ss_pred             CCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-
Q 022947          114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-  191 (289)
Q Consensus       114 ~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~-~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-  191 (289)
                      |||+||+++|.|++|||+|+|++..|+++++++++.|.++ +|+++++++|||+|+|||++    ++.++++|+|+||. 
T Consensus       108 daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD~~t~ia----~k~sg~~~~rvig~g  183 (375)
T 7mdh_A          108 DVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALIC----LKNAPDIPAKNFHAL  183 (375)
T ss_dssp             TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH----HHTCTTSCGGGEEEC
T ss_pred             CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhHHHHHH----HHHcCCCCccEEEee
Confidence            9999999999999999999999999999999999999998 79999999999999999875    55666777788887 


Q ss_pred             eeccHHHHHHHHHHHcCCCCcceee-eEEcccCCCeeeeecccccCCC-----CCChhhH--HHHHHHHHhhhHHHhhhc
Q 022947          192 TMLDVVRANTFVAEVLGLDPREVDV-PVVGGHAGVTILPLLSQVKPSC-----SLTPTEI--DYLTDRIQNGGTEVVEAK  263 (289)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~V~~-~V~G~hg~~~~vp~~S~~~v~~-----~~~~~~~--~~i~~~v~~~g~~i~~~k  263 (289)
                      |.||++||+++||+++|++|++|+. +||||||+ |+||+||++++++     .+.+++|  ++|.++|+++|++|+++|
T Consensus       184 T~LDsaR~r~~lA~~lgv~~~~V~~v~V~GeHgd-t~vp~~S~a~V~G~pl~~~~~~~~~~~~~i~~~v~~~g~eII~~k  262 (375)
T 7mdh_A          184 TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST-TQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW  262 (375)
T ss_dssp             CHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSST-TCEEECSSCEETTEEGGGTCCCHHHHHHHHHHHHHTHHHHHHHHT
T ss_pred             ehHHHHHHHHHHHHHhCcChhhcccceEEecCCC-ceeeeeecccCCCEEhhHhccchhhHHHHHHHHHHHHHHHHHHhc
Confidence            8999999999999999999999985 89999998 9999999999864     1333444  789999999999999987


Q ss_pred             CCCCcchHHHHHHHHHHHHHHh
Q 022947          264 TGAGSATLSMCRHMLLPSLPML  285 (289)
Q Consensus       264 ~g~g~t~~s~A~a~~~~~~ail  285 (289)
                         |.+++  |.++++++++|+
T Consensus       263 ---G~ts~--a~aa~~i~~~i~  279 (375)
T 7mdh_A          263 ---GRSSA--ASTAVSIADAIK  279 (375)
T ss_dssp             ---SSCCH--HHHHHHHHHHHH
T ss_pred             ---CCCch--HHHHHHHHHHHH
Confidence               34444  566666666665

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=100.00  E-value=1.6e-49  Score=367.88  Aligned_cols=228  Identities=25%  Similarity=0.457  Sum_probs=206.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccC----CceEEEEecCCCHHhhhCCCCEEEEc
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----NAVVRGFLGQQQLEDALTGMDIVIIP  121 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~----~~~v~~~~~t~d~~eal~~aDiVIit  121 (289)
                      ||+|||| |+||+++++.++..++ +||+|+|+++  +++.++|+.|...    ..++..   ++|+ ++++|||+||++
T Consensus         1 KI~IiGa-G~vG~~~a~~l~~~~l-~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~---t~d~-~a~~~aD~Vi~~   74 (308)
T 2d4a_B            1 MITILGA-GKVGMATAVMLMMRGY-DDLLLIARTPGKPQGEALDLAHAAAELGVDIRISG---SNSY-EDMRGSDIVLVT   74 (308)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHHTC-SCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEE---ESCG-GGGTTCSEEEEC
T ss_pred             CEEEECc-CHHHHHHHHHHHhCCC-CEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEE---CCCH-HHhCCCCEEEEe
Confidence            7999999 9999999999998888 8999999998  6788999998631    234443   3566 899999999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHH
Q 022947          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRAN  200 (289)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R~~  200 (289)
                      +|.|+++|++|.|++.+|+++++++++.++++||+++++++|||+|++|+++    ++.+++||+||||+ |.||++|++
T Consensus        75 ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~----~k~~~~p~~rviG~gt~LD~~R~~  150 (308)
T 2d4a_B           75 AGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNPVDAMTYVM----YKKTGFPRERVIGFSGILDSARMA  150 (308)
T ss_dssp             CSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEECCHHHHHHHHH
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH----HHhcCCChhhEEEecccchHHHHH
Confidence            9999999999999999999999999999999999999999999999999654    66679999999999 999999999


Q ss_pred             HHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCCC-----CChhhHHHHHHHHHhhhHHHhhhcCCCC-cchHHHH
Q 022947          201 TFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS-----LTPTEIDYLTDRIQNGGTEVVEAKTGAG-SATLSMC  274 (289)
Q Consensus       201 ~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~-----~~~~~~~~i~~~v~~~g~~i~~~k~g~g-~t~~s~A  274 (289)
                      +++|+++|+++++|+++||||||+ +++|+||++++.+.     +++++++++.++++++|++|++.|   | +++|++|
T Consensus       151 ~~la~~lgv~~~~v~~~v~G~Hg~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~eii~~k---g~s~~~~~a  226 (308)
T 2d4a_B          151 YYISQKLGVSFKSVNAIVLGMHGQ-KMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITELR---GYSSNYGPA  226 (308)
T ss_dssp             HHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHHHH---SSCCCHHHH
T ss_pred             HHHHHHhCcChhHeEEEEEeccCC-ceeeeehhccCCCEEHHHHcCHHHHHHHHHHHHHhhHhhhhCC---CCccHHHHH
Confidence            999999999999999999999998 99999999988541     567789999999999999999965   6 8999999


Q ss_pred             HHHHHHHHHHhcCCC
Q 022947          275 RHMLLPSLPMLVSEA  289 (289)
Q Consensus       275 ~a~~~~~~ail~~~~  289 (289)
                      .++++++++|++|+.
T Consensus       227 ~a~~~~~~ai~~~~~  241 (308)
T 2d4a_B          227 AGLVLTVEAIKRDSK  241 (308)
T ss_dssp             HHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHhCCC
Confidence            999999999999863

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=100.00  E-value=1.4e-49  Score=371.93  Aligned_cols=236  Identities=24%  Similarity=0.345  Sum_probs=201.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccE-----EEEEeCCC----chhHHhhhhcccCCceEEEEecCCCHHhhhCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSV-----LHLYDVVN----TPGVTADISHMDTNAVVRGFLGQQQLEDALTGM  115 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~e-----I~LvD~~~----~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~a  115 (289)
                      +++||+|+||+|+||+++++.|+.++++++     |+|+|+++    ++|+++||.|+.. +.+..+..+++.+++++||
T Consensus         2 ~~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~-~~~~~~~~~~~~~~~~~da   80 (333)
T 5mdh_A            2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL-PLLKDVIATDKEEIAFKDL   80 (333)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCC-TTEEEEEEESCHHHHTTTC
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhh-cccCCEEEcCCcHHHhCCC
Confidence            468999999779999999999999998888     99999974    5799999999753 2223332344567899999


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCc-EEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-ee
Q 022947          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA-IVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TM  193 (289)
Q Consensus       116 DiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~a-iviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~  193 (289)
                      |+||++||.|+++|++|.|++..|+++++++++.+++++|++ +++++|||+|++||++    ++.++++|+++||. |.
T Consensus        81 DvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNPvd~~t~~~----~~~~~~~p~~~ig~~t~  156 (333)
T 5mdh_A           81 DVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTA----SKSAPSIPKENFSCLTR  156 (333)
T ss_dssp             SEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH----HHTCTTSCGGGEEECCH
T ss_pred             CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCchHHHHHHH----HHHcCCCCcCEEEEEEh
Confidence            999999999999999999999999999999999999999997 6999999999999875    55665445555765 99


Q ss_pred             ccHHHHHHHHHHHcCCCCcceeee-EEcccCCCeeeeecccccC--CC-CC------ChhhH--HHHHHHHHhhhHHHhh
Q 022947          194 LDVVRANTFVAEVLGLDPREVDVP-VVGGHAGVTILPLLSQVKP--SC-SL------TPTEI--DYLTDRIQNGGTEVVE  261 (289)
Q Consensus       194 lds~R~~~~lA~~l~v~~~~V~~~-V~G~hg~~~~vp~~S~~~v--~~-~~------~~~~~--~~i~~~v~~~g~~i~~  261 (289)
                      ||++|++++||+++|++|++|+++ ||||||+ ++||+||++++  ++ .+      ++++|  +++.++|+++|++|++
T Consensus       157 LDs~R~~~~la~~l~v~~~~v~~~vV~GeHgd-s~vp~~S~a~v~i~g~~~~~~~~~~~~~~~~~~~~~~v~~~g~eIi~  235 (333)
T 5mdh_A          157 LDHNRAKAQIALKLGVTSDDVKNVIIWGNHSS-TQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIK  235 (333)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGEECCEEEBCSST-TCEEECTTCEEECSSCEEEHHHHHCCHHHHHTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCHHHeeecEEEEcCCC-CEEEeeeccEeccCCeeccHHHhhccccccHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999988 5999999 99999999975  33 12      22333  5899999999999999


Q ss_pred             hcCCCCcchHHHHHHHHHHHHHHhcCC
Q 022947          262 AKTGAGSATLSMCRHMLLPSLPMLVSE  288 (289)
Q Consensus       262 ~k~g~g~t~~s~A~a~~~~~~ail~~~  288 (289)
                      +|  ++++.|++|.++++++++|++|+
T Consensus       236 ~k--~~ssa~~~a~~~~~~~~~il~~~  260 (333)
T 5mdh_A          236 AR--KLSSAMSAAKAICDHVRDIWFGT  260 (333)
T ss_dssp             HH--SSCCCHHHHHHHHHHHHHHHHCC
T ss_pred             cc--CchHHHHHHHHHHHHHHHHhcCC
Confidence            87  35688999999999999999985

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=100.00  E-value=2.9e-49  Score=367.44  Aligned_cols=233  Identities=24%  Similarity=0.367  Sum_probs=207.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCC--ceEEEEecCCCHHhhhCCCCEEEE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIVII  120 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~--~~v~~~~~t~d~~eal~~aDiVIi  120 (289)
                      +++||+|||| |+||+++++.|+..++++||+|+|+++  +++.++||.|....  ..++...  ++ +++++|||+||+
T Consensus         5 ~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~--~~-~~a~~~aDvVvi   80 (317)
T 3d0o_A            5 KGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA--GE-YSDCHDADLVVI   80 (317)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE--CC-GGGGTTCSEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe--CC-HHHhCCCCEEEE
Confidence            4679999999 999999999999989889999999987  56788999886321  2334332  34 588999999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHH
Q 022947          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRA  199 (289)
Q Consensus       121 tag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R~  199 (289)
                      ++|.|+++|++|.|++.+|+++++++++.|+++||++|++++|||+|++|++    +++.+++|++||||+ |.||++|+
T Consensus        81 ~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~----~~k~~~~p~~rviG~gt~lD~~r~  156 (317)
T 3d0o_A           81 CAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVDILAYA----TWKFSGLPKERVIGSGTILDSARF  156 (317)
T ss_dssp             CCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHH----HHHHHCCCGGGEEECTTHHHHHHH
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHH----HHHHhCCCHHHEEecCccccHHHH
Confidence            9999999999999999999999999999999999999999999999999865    466779999999999 99999999


Q ss_pred             HHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCCC----------CChhhHHHHHHHHHhhhHHHhhhcCCCCcc
Q 022947          200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS----------LTPTEIDYLTDRIQNGGTEVVEAKTGAGSA  269 (289)
Q Consensus       200 ~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~----------~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t  269 (289)
                      ++++|+++|+++++|+++||||||+ +++|+||++++.+.          ++++.++++.++++++|++|++.|   |++
T Consensus       157 ~~~la~~l~v~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k---g~~  232 (317)
T 3d0o_A          157 RLLLSEAFDVAPRSVDAQIIGEHGD-TELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAK---GAT  232 (317)
T ss_dssp             HHHHHHHHTSCGGGCBCCEEBCSST-TCEECTTTCEETTEEHHHHHHTSTTHHHHHHHHHHHHHTHHHHHHHHH---SCC
T ss_pred             HHHHHHHhCcChhhEEEEEEecCCC-CeeEeeeccccCCEEHHHHhhccCCCHHHHHHHHHHHHhhhhEEEeCC---CCc
Confidence            9999999999999999999999998 99999999987531          345567899999999999999965   689


Q ss_pred             hHHHHHHHHHHHHHHhcCCC
Q 022947          270 TLSMCRHMLLPSLPMLVSEA  289 (289)
Q Consensus       270 ~~s~A~a~~~~~~ail~~~~  289 (289)
                      +|++|.|+++++++|++|+.
T Consensus       233 ~~~~a~a~~~~~~ai~~~~~  252 (317)
T 3d0o_A          233 YYGVAMGLARITEAIFRNED  252 (317)
T ss_dssp             CHHHHHHHHHHHHHHHTTCC
T ss_pred             hHhHHHHHHHHHHHHHcCCC
Confidence            99999999999999999863

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=3.7e-49  Score=366.98  Aligned_cols=233  Identities=25%  Similarity=0.390  Sum_probs=198.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccC-CceEEEEecCCCHHhhhCCCCEEEEc
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIP  121 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~-~~~v~~~~~t~d~~eal~~aDiVIit  121 (289)
                      +++||+|||+ |+||+++++.|+..++++||+|+|+++  .+++++||.|... ...++...  ++ +++++|||+||++
T Consensus         6 ~~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~--~~-~~a~~~aDvVii~   81 (318)
T 1y6j_A            6 SRSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYA--GD-YSDVKDCDVIVVT   81 (318)
T ss_dssp             -CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC----C-GGGGTTCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEE--CC-HHHhCCCCEEEEc
Confidence            4579999998 999999999999999999999999988  6788999999752 23444332  35 4889999999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHH
Q 022947          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRAN  200 (289)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R~~  200 (289)
                      +|.|+++|++|.|++.+|+++++++++.|++++|+++++++|||+|++|+++    ++.+++|++||||+ |.||++|++
T Consensus        82 ~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~~~~~----~k~s~~p~~rviG~gt~Ld~~r~~  157 (318)
T 1y6j_A           82 AGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDIITYMI----QKWSGLPVGKVIGSGTVLDSIRFR  157 (318)
T ss_dssp             CCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHHHHHHH----HHHHTCCTTTEEECTTHHHHHHHH
T ss_pred             CCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHHH----HHHcCCCHHHEeccCCchHHHHHH
Confidence            9999999999999999999999999999999999999999999999999764    56679999999999 999999999


Q ss_pred             HHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCC----C--------CChhhHHHHHHHHHhhhHHHhhhcCCCCc
Q 022947          201 TFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----S--------LTPTEIDYLTDRIQNGGTEVVEAKTGAGS  268 (289)
Q Consensus       201 ~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~----~--------~~~~~~~~i~~~v~~~g~~i~~~k~g~g~  268 (289)
                      +++|+++|+++++|+++||||||+ +++|+||++++.+    .        +++++++++.++++++|++|++.|   |+
T Consensus       158 ~~la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k---g~  233 (318)
T 1y6j_A          158 YLLSEKLGVDVKNVHGYIIGEHGD-SQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIKNK---GA  233 (318)
T ss_dssp             HHHHTTTTCCTTTEECCEEBCSSS-SCEECCTTCEETTBCSCCC-----------CCHHHHHHHHHHHHHHHHHT---SC
T ss_pred             HHHHHHhCCCHHHeEEEEecccCC-cEeeeehhceECCEEHHHHhhhhcccCCHHHHHHHHHHHHHhhHhHhhCC---Cc
Confidence            999999999999999999999998 9999999998743    1        134446899999999999999965   78


Q ss_pred             chHHHHHHHHHHHHHHhcCCC
Q 022947          269 ATLSMCRHMLLPSLPMLVSEA  289 (289)
Q Consensus       269 t~~s~A~a~~~~~~ail~~~~  289 (289)
                      ++|++|.++++++++|++|+.
T Consensus       234 t~~~~a~a~~~~~~ai~~~~~  254 (318)
T 1y6j_A          234 TYYGIAVSINTIVETLLKNQN  254 (318)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCC
T ss_pred             cHHHHHHHHHHHHHHHHcCCC
Confidence            999999999999999999863

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=100.00  E-value=3.4e-48  Score=358.16  Aligned_cols=232  Identities=25%  Similarity=0.344  Sum_probs=206.8

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeC--CC--chhHHhhhhcccC-CceEEEEecCCCHHhhhCCCCEEEEc
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV--VN--TPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIP  121 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~--~~--~~g~~~DL~~~~~-~~~v~~~~~t~d~~eal~~aDiVIit  121 (289)
                      |||+||||+|+||+++++.|+..++..|++|+|+  ++  .++.++||.|... ...++...  ++ +++++|||+||++
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~--~~-~~a~~~aDvVi~~   77 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ--GG-YEDTAGSDVVVIT   77 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE--CC-GGGGTTCSEEEEC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEe--CC-HHHhCCCCEEEEc
Confidence            6999999669999999999999898889999999  66  4677889998642 22333332  24 5889999999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHH
Q 022947          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRAN  200 (289)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R~~  200 (289)
                      +|.++++|++|.|++.+|+++++++++.+++++|+++++++|||+|++|++    +++.+++|++||||+ |.||++|++
T Consensus        78 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SNPv~~~~~~----~~~~~~~p~~rviG~gt~Ld~~r~~  153 (303)
T 1o6z_A           78 AGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLNRH----LYEAGDRSREQVIGFGGRLDSARFR  153 (303)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHHHHHHH----HHHHSSSCGGGEEECCHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHH----HHHHcCCCHHHeeecccchhHHHHH
Confidence            999999999999999999999999999999999999999999999999865    467789999999999 999999999


Q ss_pred             HHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCC--CC-ChhhHHHHHHHHHhhhHHHhhhcCCCCcchHHHHHHH
Q 022947          201 TFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC--SL-TPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMCRHM  277 (289)
Q Consensus       201 ~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~--~~-~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~~s~A~a~  277 (289)
                      +++|+++|+++++|+++||||||+ +++|+||++++.+  .+ ++++++++.++++++|++|++.   +|+++||+|.++
T Consensus       154 ~~la~~l~v~~~~v~~~v~G~HG~-~~~p~~s~~~v~g~p~~~~~~~~~~~~~~v~~~g~eii~~---kg~~~~~~a~a~  229 (303)
T 1o6z_A          154 YVLSEEFDAPVQNVEGTILGEHGD-AQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIER---KGATEWGPARGV  229 (303)
T ss_dssp             HHHHHHHTCCGGGEECCEEECSST-TEEECGGGCEETTBCCCCCHHHHHHHHHHHHHHHHHHHTT---TSSCCHHHHHHH
T ss_pred             HHHHHHhCcCHHHeEEEEEeCCCC-ccccCCcccccCCcCccCCHHHHHHHHHHHHHHhHHHHhc---CCChHHHHHHHH
Confidence            999999999999999999999998 8999999988632  33 6778999999999999999995   478999999999


Q ss_pred             HHHHHHHhcCCC
Q 022947          278 LLPSLPMLVSEA  289 (289)
Q Consensus       278 ~~~~~ail~~~~  289 (289)
                      ++++++|++|+.
T Consensus       230 ~~~~~ai~~~~~  241 (303)
T 1o6z_A          230 AHMVEAILHDTG  241 (303)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             HHHHHHHHhCCC
Confidence            999999999863

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=100.00  E-value=1.7e-48  Score=361.08  Aligned_cols=232  Identities=26%  Similarity=0.468  Sum_probs=199.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhccc----CCceEEEEecCCCHHhhhCCCCEEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TNAVVRGFLGQQQLEDALTGMDIVI  119 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~----~~~~v~~~~~t~d~~eal~~aDiVI  119 (289)
                      ++||+|||| |+||+++++.|+..|+++ |+|+|+++  .++.++||.|..    ...++..   ++|+ ++++|||+||
T Consensus         2 ~~kI~VIGa-G~vG~~~a~~la~~g~~~-v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~---t~d~-~a~~~aD~Vi   75 (309)
T 1ur5_A            2 RKKISIIGA-GFVGSTTAHWLAAKELGD-IVLLDIVEGVPQGKALDLYEASPIEGFDVRVTG---TNNY-ADTANSDVIV   75 (309)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCSE-EEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEE---ESCG-GGGTTCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCCe-EEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEE---CCCH-HHHCCCCEEE
Confidence            469999999 999999999999999764 99999988  567788999863    1234443   3577 8999999999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHH
Q 022947          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVR  198 (289)
Q Consensus       120 itag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R  198 (289)
                      +++|.|+++|++|.|++.+|+++++++++.+++++|+++++++|||+|++|+++    ++.+++||+||||+ |.||++|
T Consensus        76 ~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNPv~~~t~~~----~~~~~~~~~rviG~gt~LD~~r  151 (309)
T 1ur5_A           76 VTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLA----AEVSGFPKERVIGQAGVLDAAR  151 (309)
T ss_dssp             ECCCC--------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEECCHHHHHHH
T ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCCchHHHHHHH----HHHcCCCHHHEEECCcchHHHH
Confidence            999999999999999999999999999999999999999999999999998654    56679999999999 9999999


Q ss_pred             HHHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCC-----CCChhhHHHHHHHHHhhhHHHhhhcCCCCcchHHH
Q 022947          199 ANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-----SLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM  273 (289)
Q Consensus       199 ~~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~-----~~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~~s~  273 (289)
                      +++++|+++|+++++|+++||||||+ +++|+||++++.+     .+++++++++.++++++|++|++. .++|+++|++
T Consensus       152 ~~~~la~~lgv~~~~v~~~v~G~Hg~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~eii~~-~~kgs~~~~~  229 (309)
T 1ur5_A          152 YRTFIAMEAGVSVEDVQAMLMGGHGD-EMVPLPRFSCISGIPVSEFIAPDRLAQIVERTRKGGGEIVNL-LKTGSAYYAP  229 (309)
T ss_dssp             HHHHHHHHHTCCGGGEEECCEECSGG-GEECCGGGEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHH-HSSCCCCHHH
T ss_pred             HHHHHHHHhCCChhheeEEEecCcCC-ceeeeeecceeCCEeHHHHcCHhHHHHHHHHHHhhhHHhhhh-ccCCCcHHHH
Confidence            99999999999999999999999997 9999999998753     256778999999999999999995 2457899999


Q ss_pred             HHHHHHHHHHHhcCCC
Q 022947          274 CRHMLLPSLPMLVSEA  289 (289)
Q Consensus       274 A~a~~~~~~ail~~~~  289 (289)
                      |.++++++++|++|+.
T Consensus       230 a~a~~~~~~ai~~~~~  245 (309)
T 1ur5_A          230 AAATAQMVEAVLKDKK  245 (309)
T ss_dssp             HHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHcCCC
Confidence            9999999999999873

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=100.00  E-value=5e-48  Score=358.97  Aligned_cols=233  Identities=23%  Similarity=0.354  Sum_probs=206.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCC--ceEEEEecCCCHHhhhCCCCEEEE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIVII  120 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~--~~v~~~~~t~d~~eal~~aDiVIi  120 (289)
                      +++||+|||+ |.||+++++.|+..++.+||+|+|+++  .++.++|+.|....  ..++...  ++ +++++|||+||+
T Consensus         5 ~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~--~~-~~al~~aDvVii   80 (316)
T 1ldn_A            5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH--GD-YDDCRDADLVVI   80 (316)
T ss_dssp             TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE--CC-GGGTTTCSEEEE
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEc--Cc-HHHhCCCCEEEE
Confidence            4579999999 999999999999888889999999987  56778999986431  1344332  34 488999999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHH
Q 022947          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRA  199 (289)
Q Consensus       121 tag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R~  199 (289)
                      ++|.++++|++|.|++.+|.++++++++.+++++|+++++++|||+|++|+++    ++.+++|++||||+ |.||++|+
T Consensus        81 a~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tNPv~~~~~~~----~~~s~~p~~rviG~gt~lD~~r~  156 (316)
T 1ldn_A           81 CAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYAT----WKFSGLPHERVIGSGTILDTARF  156 (316)
T ss_dssp             CCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHH----HHHHTCCGGGEEECTTHHHHHHH
T ss_pred             cCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHHH----HHHhCCCHHHEEecccchHHHHH
Confidence            99999999999999999999999999999999999999999999999999764    56679999999999 99999999


Q ss_pred             HHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCC----C-------CChhhHHHHHHHHHhhhHHHhhhcCCCCc
Q 022947          200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----S-------LTPTEIDYLTDRIQNGGTEVVEAKTGAGS  268 (289)
Q Consensus       200 ~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~----~-------~~~~~~~~i~~~v~~~g~~i~~~k~g~g~  268 (289)
                      ++++|+++|+++++|+++||||||+ +++|+||++++.+    .       +++++++++.++++++|++|++.|   |+
T Consensus       157 ~~~la~~l~v~~~~v~~~v~G~HG~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k---g~  232 (316)
T 1ldn_A          157 RFLLGEYFSVAPQNVHAYIIGEHGD-TELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKK---GA  232 (316)
T ss_dssp             HHHHHHHHTSCGGGEEEEEEBCSST-TCEEEEEEEEETTEESTTTSGGGTTTHHHHHHHHHHHHHHHHHHHHHHH---SC
T ss_pred             HHHHHHHhCCCHHHeEEEEecccCC-ceeeeehhccCCCEEHHHHhhccccCCHHHHHHHHHHHHHhHHHHHhcc---CC
Confidence            9999999999999999999999998 9999999988743    1       334457899999999999999965   67


Q ss_pred             chHHHHHHHHHHHHHHhcCCC
Q 022947          269 ATLSMCRHMLLPSLPMLVSEA  289 (289)
Q Consensus       269 t~~s~A~a~~~~~~ail~~~~  289 (289)
                      ++|++|.++++++++|++|+.
T Consensus       233 ~~~~~a~a~~~~~~ai~~~~~  253 (316)
T 1ldn_A          233 TYYGIAMGLARVTRAILHNEN  253 (316)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCC
T ss_pred             cHHHHHHHHHHHHHHHHhCCC
Confidence            999999999999999999863

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=100.00  E-value=3.1e-48  Score=359.80  Aligned_cols=234  Identities=26%  Similarity=0.430  Sum_probs=202.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeC--CC--chhHHhhhhcccC-C-ceEEEEecCCCHHhhhCCCCEEEE
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV--VN--TPGVTADISHMDT-N-AVVRGFLGQQQLEDALTGMDIVII  120 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~--~~--~~g~~~DL~~~~~-~-~~v~~~~~t~d~~eal~~aDiVIi  120 (289)
                      |||+||||+|+||+++++.|+..++..|++|+|+  ++  .++.++|+.|... . ..+.....+++++++++|||+||+
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~gaD~Vi~   80 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCCCEEEE
Confidence            5999999999999999999999998889999999  65  4678899988642 1 223332222225689999999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHH
Q 022947          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRA  199 (289)
Q Consensus       121 tag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R~  199 (289)
                      +||.|+++|++|.+++.+|+++++++++.+++++ +++++++|||+|++|+++    ++.+++|++|+||+ |.||++|+
T Consensus        81 ~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-~~~vlv~SNPv~~~t~~~----~k~~~~p~~rviG~gt~LD~~r~  155 (313)
T 1hye_A           81 TSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFVITNPVDVMTYKA----LVDSKFERNQVFGLGTHLDSLRF  155 (313)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECSSSHHHHHHHH----HHHHCCCTTSEEECTTHHHHHHH
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecCcHHHHHHHH----HHhhCcChhcEEEeCccHHHHHH
Confidence            9999999999999999999999999999999999 999999999999999764    56679999999999 99999999


Q ss_pred             HHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCC----C---CChhhHHHHHHHHHhhhHHHhhhcCCCCcchHH
Q 022947          200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----S---LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLS  272 (289)
Q Consensus       200 ~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~----~---~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~~s  272 (289)
                      ++++|+++|+++++|+++||||||+ +++|+||++++.+    .   +++++++++.++++++|++|++.   +|+++|+
T Consensus       156 ~~~la~~lgv~~~~v~~~v~G~Hg~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~---kgs~~~~  231 (313)
T 1hye_A          156 KVAIAKFFGVHIDEVRTRIIGEHGD-SMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRL---KGGSEFG  231 (313)
T ss_dssp             HHHHHHHHTCCGGGEECCEEECSST-TEEECGGGCEETTEEGGGCGGGGGCCHHHHHHHHHHHTTSCCC---------CC
T ss_pred             HHHHHHHhCcCHHHeEEEEeeccCC-cccceeeccccCCEEHHHHhcCCHHHHHHHHHHHHhccceeecC---CCCcHHH
Confidence            9999999999999999999999998 9999999998754    1   25667899999999999999995   4789999


Q ss_pred             HHHHHHHHHHHHhcCCC
Q 022947          273 MCRHMLLPSLPMLVSEA  289 (289)
Q Consensus       273 ~A~a~~~~~~ail~~~~  289 (289)
                      +|.++++++++|++|+.
T Consensus       232 ~a~a~~~~~~ai~~~~~  248 (313)
T 1hye_A          232 PAAAILNVVRCIVNNEK  248 (313)
T ss_dssp             HHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHcCCC
Confidence            99999999999999863

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=100.00  E-value=7.4e-48  Score=355.99  Aligned_cols=224  Identities=18%  Similarity=0.243  Sum_probs=194.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-chhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      +++||+|||| |+||+++++.++..++++||+|+|+++ ..++++|+.|.. .+++..   ++|+ ++++|||+||+++|
T Consensus        13 ~~~kV~ViGa-G~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~-~~~i~~---t~d~-~~l~~aD~Vi~aag   86 (303)
T 2i6t_A           13 TVNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFN-LPNVEI---SKDL-SASAHSKVVIFTVN   86 (303)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHT-CTTEEE---ESCG-GGGTTCSEEEECCC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhc-CCCeEE---eCCH-HHHCCCCEEEEcCC
Confidence            3569999998 999999999999999999999999988 678889999854 235554   3577 88999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHHHH
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTF  202 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R~~~~  202 (289)
                      .+ ++|++|.|++.+|++++++++++++++||+++++++|||+|++|++    +++.++|||+||||+ |.||++|++++
T Consensus        87 ~~-~pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sNP~~~~t~~----~~~~~~~p~~rviG~gt~Ld~~R~~~~  161 (303)
T 2i6t_A           87 SL-GSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVEIMTYV----TWKLSTFPANRVIGIGCNLDSQRLQYI  161 (303)
T ss_dssp             C-----CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSSSHHHHHHH----HHHHHCCCGGGEEECTTHHHHHHHHHH
T ss_pred             CC-CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCChHHHHHHH----HHHhcCCCHHHeeCCCCCchHHHHHHH
Confidence            96 8999999999999999999999999999999999999999999865    466789999999999 99999999999


Q ss_pred             HHHHcCCCCcceeeeEEcccCCCeeeeecccccCCCCCChhhHHHHHHHHHhhhHHHhhhcCCCCcchHHHHHHHHHHHH
Q 022947          203 VAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMCRHMLLPSL  282 (289)
Q Consensus       203 lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~~s~A~a~~~~~~  282 (289)
                      +|+++|+++++|+++||||||+ +++|+||+...   +   ..+++.++++++|++|++.   +|+++||+|.+++++++
T Consensus       162 la~~lgv~~~~v~~~v~G~Hg~-s~~p~~s~~~~---~---~~~~~~~~~~~~g~eii~~---kGst~~~~a~a~~~i~~  231 (303)
T 2i6t_A          162 ITNVLKAQTSGKEVWVIGEQGE-DKVLTWSGQEE---V---VSHTSQVQLSNRAMELLRV---KGQRSWSVGLSVADMVD  231 (303)
T ss_dssp             HHHTSCCTTGGGGEEEEBSCSS-SCEEEEBCSSC---C---CCHHHHHHHHHHHHTTSSS---CCCCHHHHHHHHHHHHH
T ss_pred             HHHHcCCChHHeEEEEecCCCC-Ccccccccccc---c---cHHHHHHHHHHHHHHHHHc---cCchHHhHHHHHHHHHH
Confidence            9999999999999999999998 89999999631   1   2357888899999999984   57899999999999999


Q ss_pred             HHhcCCC
Q 022947          283 PMLVSEA  289 (289)
Q Consensus       283 ail~~~~  289 (289)
                      +|++|+.
T Consensus       232 ai~~~~~  238 (303)
T 2i6t_A          232 SIVNNKK  238 (303)
T ss_dssp             HHHTTCC
T ss_pred             HHHcCCC
Confidence            9999873

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=100.00  E-value=1.7e-46  Score=350.43  Aligned_cols=233  Identities=32%  Similarity=0.532  Sum_probs=206.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccC----CceEEEEecCCCHHhhhCCCCEE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----NAVVRGFLGQQQLEDALTGMDIV  118 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~----~~~v~~~~~t~d~~eal~~aDiV  118 (289)
                      +++||+|||| |.+|++++..|+..|++ +|+|+|+++  .++.++|+.+...    ..++..   ++|+ +++++||+|
T Consensus        13 ~~~kI~ViGa-G~vG~~iA~~la~~g~~-~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~---t~d~-~al~~aD~V   86 (328)
T 2hjr_A           13 MRKKISIIGA-GQIGSTIALLLGQKDLG-DVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFG---ENNY-EYLQNSDVV   86 (328)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEE---ESCG-GGGTTCSEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEE---CCCH-HHHCCCCEE
Confidence            4479999998 99999999999999986 499999998  4666778877531    234443   4577 899999999


Q ss_pred             EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEee-eccHH
Q 022947          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVV  197 (289)
Q Consensus       119 Iitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t-~lds~  197 (289)
                      |+++|.|+++|++|.|++.+|++++++++++|+++||+++++++|||+|++|+++    ++.++|||+||+|+| .||++
T Consensus        87 I~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~----~~~~~~~~~rviG~~t~Ld~~  162 (328)
T 2hjr_A           87 IITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITNPLDAMVYYF----KEKSGIPANKVCGMSGVLDSA  162 (328)
T ss_dssp             EECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEESCHHHHHH
T ss_pred             EEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHH----HHhcCCChhhEEEeCcHHHHH
Confidence            9999999999999999999999999999999999999999999999999998654    556789999999995 99999


Q ss_pred             HHHHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCCC----------CChhhHHHHHHHHHhhhHHHhhhcCCCC
Q 022947          198 RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS----------LTPTEIDYLTDRIQNGGTEVVEAKTGAG  267 (289)
Q Consensus       198 R~~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~----------~~~~~~~~i~~~v~~~g~~i~~~k~g~g  267 (289)
                      |+++++|+++|+++++|+++|||+||+ +++|+||++++.+.          +++++++++.++++++|++|++.. ++|
T Consensus       163 R~~~~la~~lgv~~~~v~~~v~G~Hg~-t~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~~-~~g  240 (328)
T 2hjr_A          163 RFRCNLSRALGVKPSDVSAIVVGGHGD-EMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELL-KTG  240 (328)
T ss_dssp             HHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHH-SSC
T ss_pred             HHHHHHHHHhCCCHHHeeEEEecCCCC-ceeeeeeeceECCEEHHHHhhccCCCHHHHHHHHHHHHhhHHHHHhhh-CCC
Confidence            999999999999999999999999998 99999999987541          456677899999999999999963 568


Q ss_pred             cchHHHHHHHHHHHHHHhcCCC
Q 022947          268 SATLSMCRHMLLPSLPMLVSEA  289 (289)
Q Consensus       268 ~t~~s~A~a~~~~~~ail~~~~  289 (289)
                      +++||+|.++++++++|++|+.
T Consensus       241 s~~~~~a~a~~~i~~ai~~~~~  262 (328)
T 2hjr_A          241 SAFYAPAASAVAMAQAYLKDSK  262 (328)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCC
T ss_pred             chHHHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999873

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=100.00  E-value=2.5e-46  Score=348.44  Aligned_cols=230  Identities=27%  Similarity=0.486  Sum_probs=204.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhccc----CCceEEEEecCCCHHhhhCCCCEEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TNAVVRGFLGQQQLEDALTGMDIVI  119 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~----~~~~v~~~~~t~d~~eal~~aDiVI  119 (289)
                      ++||+|||| |+||++++..|+..++++ |+|+|+++  .++.++|+.+..    ...++..   ++|+ ++++|||+||
T Consensus         4 ~~kI~VIGa-G~vG~~ia~~la~~g~~~-v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~---t~d~-~al~~aD~Vi   77 (322)
T 1t2d_A            4 KAKIVLVGS-GMIGGVMATLIVQKNLGD-VVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSG---SNTY-DDLAGADVVI   77 (322)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCE-EEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEE---ECCG-GGGTTCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEE---CCCH-HHhCCCCEEE
Confidence            569999998 999999999999999864 99999988  567778888752    1234443   4577 8999999999


Q ss_pred             EcCCCCCCCCCc-----hhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-ee
Q 022947          120 IPAGVPRKPGMT-----RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TM  193 (289)
Q Consensus       120 itag~~~~~g~~-----r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~  193 (289)
                      +++|.|+++|++     |.|++.+|+++++++++.|+++||+++++++|||+|++|+++    ++.++|||+||+|+ |.
T Consensus        78 ~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNP~~~~t~~~----~~~~g~~~~rviG~gt~  153 (322)
T 1t2d_A           78 VTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMVQLL----HQHSGVPKNKIIGLGGV  153 (322)
T ss_dssp             ECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHH----HHHHCCCGGGEEECCHH
T ss_pred             EeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHHH----HHhcCCChHHEEeccCc
Confidence            999999999999     999999999999999999999999999999999999998664    55678999999999 69


Q ss_pred             ccHHHHHHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCC----------CCChhhHHHHHHHHHhhhHHHhhhc
Q 022947          194 LDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----------SLTPTEIDYLTDRIQNGGTEVVEAK  263 (289)
Q Consensus       194 lds~R~~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~----------~~~~~~~~~i~~~v~~~g~~i~~~k  263 (289)
                      ||++|+++++|+++|+++++|+++||||||+ +++|+||++++.+          .+++++++++.++++++|++|++.|
T Consensus       154 ld~~R~~~~la~~lgv~~~~v~~~v~G~HG~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k  232 (322)
T 1t2d_A          154 LDTSRLKYYISQKLNVCPRDVNAHIVGAHGN-KMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNLH  232 (322)
T ss_dssp             HHHHHHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHhCCCHHHeEEEEEcCCCC-cEEeeHHHceECcEeHHHhccccCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999998 9999999988743          1466668999999999999999975


Q ss_pred             CCCCcchHHHHHHHHHHHHHHhcCCC
Q 022947          264 TGAGSATLSMCRHMLLPSLPMLVSEA  289 (289)
Q Consensus       264 ~g~g~t~~s~A~a~~~~~~ail~~~~  289 (289)
                         |+++||+|.++++++++|++|+.
T Consensus       233 ---gs~~~~~a~a~~~~~~ai~~~~~  255 (322)
T 1t2d_A          233 ---ASPYVAPAAAIIEMAESYLKDLK  255 (322)
T ss_dssp             ---SSCCHHHHHHHHHHHHHHHTTCC
T ss_pred             ---CchHHHHHHHHHHHHHHHHhCCC
Confidence               68999999999999999999863

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=100.00  E-value=4e-46  Score=348.30  Aligned_cols=233  Identities=31%  Similarity=0.544  Sum_probs=205.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhccc----CCceEEEEecCCCHHhhhCCCCEE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TNAVVRGFLGQQQLEDALTGMDIV  118 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~----~~~~v~~~~~t~d~~eal~~aDiV  118 (289)
                      ++|||+|||| |.+|++++..|+..+++ +|+|+|+++  .++.++|+.|..    ...++..   ++|+++++++||+|
T Consensus         8 ~~~kI~VIGa-G~vG~~lA~~la~~g~~-~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~---t~d~~ea~~~aDiV   82 (331)
T 1pzg_A            8 RRKKVAMIGS-GMIGGTMGYLCALRELA-DVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA---EYSYEAALTGADCV   82 (331)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCC-EEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE---ECSHHHHHTTCSEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEECChhHHHHHHHHHHhhhhccCCCCEEEE---eCCHHHHhCCCCEE
Confidence            3579999998 99999999999998875 599999998  456567777752    1234443   46887799999999


Q ss_pred             EEcCCCCCCCCC-----chhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-e
Q 022947          119 IIPAGVPRKPGM-----TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-T  192 (289)
Q Consensus       119 Iitag~~~~~g~-----~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t  192 (289)
                      |+++|.|+++|+     +|.|++.+|+++++++++.|+++||+++++++|||+|++|+++    ++.++|||+||+|+ |
T Consensus        83 i~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNP~~~~t~~~----~~~~~~~~~rviG~gt  158 (331)
T 1pzg_A           83 IVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKVM----CEASGVPTNMICGMAC  158 (331)
T ss_dssp             EECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEECCH
T ss_pred             EEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCchHHHHHHH----HHhcCCChhcEEeccc
Confidence            999999999999     9999999999999999999999999999999999999998664    55678999999999 6


Q ss_pred             eccHHHHHHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCCC----------CChhhHHHHHHHHHhhhHHHhhh
Q 022947          193 MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS----------LTPTEIDYLTDRIQNGGTEVVEA  262 (289)
Q Consensus       193 ~lds~R~~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~----------~~~~~~~~i~~~v~~~g~~i~~~  262 (289)
                      .||++|++++||+++|+++++|+++|||+||+ +++|+||++++.+.          +++++++++.++++++|++|++.
T Consensus       159 ~LD~~R~~~~la~~lgv~~~~v~~~v~G~Hg~-~~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~eii~~  237 (331)
T 1pzg_A          159 MLDSGRFRRYVADALSVSPRDVQATVIGTHGD-CMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVRF  237 (331)
T ss_dssp             HHHHHHHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCHHHceEEEecCCCC-CEeeeeecceECCEEHHHHhhcccCCHHHHHHHHHHHHhccHHHHHh
Confidence            99999999999999999999999999999998 99999999987541          45566889999999999999995


Q ss_pred             cCCCCcchHHHHHHHHHHHHHHhcCC
Q 022947          263 KTGAGSATLSMCRHMLLPSLPMLVSE  288 (289)
Q Consensus       263 k~g~g~t~~s~A~a~~~~~~ail~~~  288 (289)
                      . ++|+++||+|.++++++++|++|+
T Consensus       238 ~-~kgst~~~~a~a~~~ii~ai~~~~  262 (331)
T 1pzg_A          238 L-GQGSAYYAPAASAVAMATSFLNDE  262 (331)
T ss_dssp             H-SSSCCCHHHHHHHHHHHHHHHTTC
T ss_pred             h-cCCCccchHHHHHHHHHHHHHhCC
Confidence            2 457899999999999999999987

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=100.00  E-value=2.3e-45  Score=342.77  Aligned_cols=235  Identities=23%  Similarity=0.317  Sum_probs=202.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCc-----cEEEEEeCC----C--chhHHhhhhcccCCceEEEEecCCCHHhhhC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLV-----SVLHLYDVV----N--TPGVTADISHMDTNAVVRGFLGQQQLEDALT  113 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~-----~eI~LvD~~----~--~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~  113 (289)
                      ++|||+||||+|+||+++++.|+..+++     .||+|+|++    +  ..++++||.|..... ...+..+++++++++
T Consensus         4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~-~~~i~~~~~~~~al~   82 (329)
T 1b8p_A            4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPL-LAGMTAHADPMTAFK   82 (329)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTT-EEEEEEESSHHHHTT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccc-cCcEEEecCcHHHhC
Confidence            4689999998899999999999988865     499999998    5  468899999963211 222333467889999


Q ss_pred             CCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhC-CCCCCcEEEe
Q 022947          114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVG-TYDPKRLLGV  191 (289)
Q Consensus       114 ~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~-~~~~~kviG~  191 (289)
                      |||+||++||.++++|++|.|++.+|+++++++++.++++| |+++++++|||+|++|+++    ++.+ +||++|++|+
T Consensus        83 ~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~t~~~----~~~~~~~p~~~v~g~  158 (329)
T 1b8p_A           83 DADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAYIA----MKSAPSLPAKNFTAM  158 (329)
T ss_dssp             TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH----HHTCTTSCGGGEEEC
T ss_pred             CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHHHHHH----HHHcCCCCHHHEEEe
Confidence            99999999999999999999999999999999999999997 9999999999999999765    5556 8999999999


Q ss_pred             eeccHHHHHHHHHHHcCCCCcceee-eEEcccCCCeeeeecccccCCCC-----CChhh--HHHHHHHHHhhhHHHhhhc
Q 022947          192 TMLDVVRANTFVAEVLGLDPREVDV-PVVGGHAGVTILPLLSQVKPSCS-----LTPTE--IDYLTDRIQNGGTEVVEAK  263 (289)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~V~~-~V~G~hg~~~~vp~~S~~~v~~~-----~~~~~--~~~i~~~v~~~g~~i~~~k  263 (289)
                      |.||+.|+++++|+++|+++++|+. +|||+||+ +++|+||++++.+.     +++++  .+++.++++++|++|++.|
T Consensus       159 t~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~Hg~-s~~p~~s~~~v~g~~~~~~~~~~~~~~~~i~~~v~~~g~eii~~k  237 (329)
T 1b8p_A          159 LRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSP-TMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDAR  237 (329)
T ss_dssp             CHHHHHHHHHHHHHHHTCCGGGEESCEEEBCSST-TCEEECSSCEETTEEHHHHHCCHHHHHHTHHHHHHTHHHHHHHHH
T ss_pred             ecHHHHHHHHHHHHHhCcCHHHceEEEEEeccCC-cEeeehHHCeECCeeHHHHhccchhhHHHHHHHHHHHHHhhhhcc
Confidence            9999999999999999999999995 68999998 89999999998642     23334  4799999999999999998


Q ss_pred             CCCCcchHHHHHHHHHHHHHHhcC
Q 022947          264 TGAGSATLSMCRHMLLPSLPMLVS  287 (289)
Q Consensus       264 ~g~g~t~~s~A~a~~~~~~ail~~  287 (289)
                       |. +++++.|.++++++++|++|
T Consensus       238 -g~-~~~~~~a~a~~~~~~ai~~~  259 (329)
T 1b8p_A          238 -GV-SSAASAANAAIDHIHDWVLG  259 (329)
T ss_dssp             -SS-CCHHHHHHHHHHHHHHHHHC
T ss_pred             -CC-ChHHHHHHHHHHHHHHHhcC
Confidence             43 34455677999999999988

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=100.00  E-value=1.7e-45  Score=340.22  Aligned_cols=229  Identities=23%  Similarity=0.327  Sum_probs=181.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccC-CceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~-~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      |||+|||+ |.+|+++++.|+..|+.++|+|+|+++  .++.++|+.|... ....+...  +++ +++++||+||+++|
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~--~~~-~a~~~aDvVIi~~~   76 (304)
T 2v6b_A            1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWH--GGH-SELADAQVVILTAG   76 (304)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEE--ECG-GGGTTCSEEEECC-
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEE--CCH-HHhCCCCEEEEcCC
Confidence            59999998 999999999999999889999999987  4677888887642 12223222  355 78999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHHHH
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTF  202 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R~~~~  202 (289)
                      .|+++|++|.|++.+|+++++++++.+++++|+++++++|||+|++++++    ++.+  ||+||||+ |.||+.|++++
T Consensus        77 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~~~~~~~----~~~~--~~~rviG~gt~Ld~~r~~~~  150 (304)
T 2v6b_A           77 ANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLA----TQLA--PGQPVIGSGTVLDSARFRHL  150 (304)
T ss_dssp             -----------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHHHHHHHH----HHHS--CSSCEEECTTHHHHHHHHHH
T ss_pred             CCCCCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHH----HHhC--ChhcEEeCCcCchHHHHHHH
Confidence            99999999999999999999999999999999999999999999998654    4454  89999999 99999999999


Q ss_pred             HHHHcCCCCcceeeeEEcccCCCeeeeecccccCCCC------------CChhhHHHHHHHHHhhhHHHhhhcCCCCcch
Q 022947          203 VAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS------------LTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT  270 (289)
Q Consensus       203 lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~------------~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~  270 (289)
                      +|+++|+++++|+++|||+||+ +++|+||++++.+.            +++++++++.++++++|++|++.   +|+++
T Consensus       151 la~~l~v~~~~v~~~v~G~Hg~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~eii~~---kg~t~  226 (304)
T 2v6b_A          151 MAQHAGVDGTHAHGYVLGEHGD-SEVLAWSSAMVAGMPVADFMQAQNLPWNEQVRAKIDEGTRNAAASIIEG---KRATY  226 (304)
T ss_dssp             HHHHHTSCGGGEECCEEESSST-TEEECGGGCEETTEEHHHHHHHHTCCCSHHHHHHHHHHHTC--------------CC
T ss_pred             HHHHhCcCHHHceEEEecCCCC-ceeeehhHccCCCEEHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhc---cCCcH
Confidence            9999999999999999999998 99999999998541            35667899999999999999995   47899


Q ss_pred             HHHHHHHHHHHHHHhcCCC
Q 022947          271 LSMCRHMLLPSLPMLVSEA  289 (289)
Q Consensus       271 ~s~A~a~~~~~~ail~~~~  289 (289)
                      |++|.++++++++|++|+.
T Consensus       227 ~~~a~a~~~~~~ai~~~~~  245 (304)
T 2v6b_A          227 YGIGAALARITEAVLRDRR  245 (304)
T ss_dssp             HHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHhCCC
Confidence            9999999999999999863

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=100.00  E-value=1.8e-44  Score=334.09  Aligned_cols=232  Identities=32%  Similarity=0.526  Sum_probs=203.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhccc----CCceEEEEecCCCHHhhhCCCCEEEE
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TNAVVRGFLGQQQLEDALTGMDIVII  120 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~----~~~~v~~~~~t~d~~eal~~aDiVIi  120 (289)
                      |||+|||+ |.+|++++..|+..+...+|+|+|+++  .++..+|+.+..    ...++..   ++|+ +++++||+||+
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~---t~d~-~~l~~aDvVii   75 (310)
T 1guz_A            1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG---SNDY-ADTANSDIVII   75 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEE---ESCG-GGGTTCSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEE---CCCH-HHHCCCCEEEE
Confidence            69999999 999999999999876556999999988  456666777642    1223442   3577 45999999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHH
Q 022947          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRA  199 (289)
Q Consensus       121 tag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R~  199 (289)
                      +++.|+++|++|.|++.+|+++++++++.+++++|+++++++|||+|++++++    ++.+++|++|+||+ |.||++|+
T Consensus        76 av~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~~~~~~~~----~~~~~~~~~rviG~gt~ld~~r~  151 (310)
T 1guz_A           76 TAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHVA----WVRSGLPKERVIGMAGVLDAARF  151 (310)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHHHHHHHH----HHHHCSCGGGEEEECHHHHHHHH
T ss_pred             eCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchHHHHHHH----HHhcCCChHHEEECCCchHHHHH
Confidence            99999999999999999999999999999999999999999999999998654    55679999999999 99999999


Q ss_pred             HHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCCC-----CChhhHHHHHHHHHhhhHHHhhhcCCCCcchHHHH
Q 022947          200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS-----LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMC  274 (289)
Q Consensus       200 ~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~-----~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~~s~A  274 (289)
                      ++++|+++|+++++|+++|||+||+ +++|+||++++.+.     +++++++++.++++++|++|++. .++|+++|++|
T Consensus       152 ~~~la~~l~v~~~~v~~~v~G~Hg~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~-~~kgs~~~~~a  229 (310)
T 1guz_A          152 RSFIAMELGVSMQDINACVLGGHGD-AMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEH-LKQGSAFYAPA  229 (310)
T ss_dssp             HHHHHHHHTCCGGGEECCEEECSGG-GEEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHHH-HSSSCCCHHHH
T ss_pred             HHHHHHHhCCCHHHeEEEEEcccCC-cEeeeeecccCCCEEHHHHCCHHHHHHHHHHHHHhHHHHHhh-cCCCCcHHHHH
Confidence            9999999999999999999999997 99999999988541     56778899999999999999995 24578999999


Q ss_pred             HHHHHHHHHHhcCCC
Q 022947          275 RHMLLPSLPMLVSEA  289 (289)
Q Consensus       275 ~a~~~~~~ail~~~~  289 (289)
                      .++++++++|++|+.
T Consensus       230 ~a~~~~~~ai~~~~~  244 (310)
T 1guz_A          230 SSVVEMVESIVLDRK  244 (310)
T ss_dssp             HHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHcCCC
Confidence            999999999999863

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=6.3e-42  Score=318.16  Aligned_cols=230  Identities=27%  Similarity=0.459  Sum_probs=199.8

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccC-CceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~-~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      |||+|||+ |.+|++++..|+..|+.++|+|+|+++  .++...|+.+... ....+... + |+ +++++||+||++++
T Consensus         1 mkI~VIGa-G~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~-~-d~-~~~~~aDvViiav~   76 (319)
T 1a5z_A            1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYA-G-DY-ADLKGSDVVIVAAG   76 (319)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEE-C-CG-GGGTTCSEEEECCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEe-C-CH-HHhCCCCEEEEccC
Confidence            69999998 999999999999888888999999986  4555566655421 11122222 2 54 78999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHHHH
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTF  202 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R~~~~  202 (289)
                      .++++|++|.|++.+|+++++++++.|++++|+++++++|||++++++++    ++.++||++||+|+ |.||+.|++++
T Consensus        77 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~~~~~~~----~~~~~~~~~rviG~~t~ld~~r~~~~  152 (319)
T 1a5z_A           77 VPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDVLTYFF----LKESGMDPRKVFGSGTVLDTARLRTL  152 (319)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH----HHHHTCCTTTEEECTTHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcHHHHHHHH----HHHhCCChhhEEeeCccHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998654    45568999999999 78999999999


Q ss_pred             HHHHcCCCCcceeeeEEcccCCCeeeeecccccCCCC-----------CChhhHHHHHHHHHhhhHHHhhhcCCCCcchH
Q 022947          203 VAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS-----------LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATL  271 (289)
Q Consensus       203 lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~-----------~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~~  271 (289)
                      +|+++|+++++|+++||||||+ +++|+||++++.+.           ++++.++++.++++++|++|++.|   |+++|
T Consensus       153 la~~lgv~~~~v~~~v~G~hg~-~~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k---g~~~~  228 (319)
T 1a5z_A          153 IAQHCGFSPRSVHVYVIGEHGD-SEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIERK---GATHY  228 (319)
T ss_dssp             HHHHHTCCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHHH---SCCCH
T ss_pred             HHHHhCcCHHHceEEEEeCCCC-CcccchhhceECCEEHHHHhhcccccCHHHHHHHHHHHHHhhhhhhccC---CchHH
Confidence            9999999999999999999998 89999999987531           455668899999999999999965   68899


Q ss_pred             HHHHHHHHHHHHHhcCC
Q 022947          272 SMCRHMLLPSLPMLVSE  288 (289)
Q Consensus       272 s~A~a~~~~~~ail~~~  288 (289)
                      ++|.++++++++|++|+
T Consensus       229 ~~a~a~~~~~~ai~~~~  245 (319)
T 1a5z_A          229 AIALAVADIVESIFFDE  245 (319)
T ss_dssp             HHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHhCC
Confidence            99999999999999986

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=1e-40  Score=308.27  Aligned_cols=232  Identities=19%  Similarity=0.308  Sum_probs=195.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccC--CceEEEEecCCCHHhhhCCCCEEEEc
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVIIP  121 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~--~~~v~~~~~t~d~~eal~~aDiVIit  121 (289)
                      +|||+|||+ |.+|++++..|+..|+..+|+|+|+++  .++...|+.|...  ...++..  ++|+ +++++||+||++
T Consensus         1 m~kI~VIGa-G~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~d~-~~~~~aDvViia   76 (309)
T 1hyh_A            1 ARKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIV--INDW-AALADADVVIST   76 (309)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEE--ESCG-GGGTTCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEE--eCCH-HHhCCCCEEEEe
Confidence            369999998 999999999999888556999999987  4555666665431  1123332  2466 889999999999


Q ss_pred             CCCCCC----CCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccH
Q 022947          122 AGVPRK----PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDV  196 (289)
Q Consensus       122 ag~~~~----~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds  196 (289)
                      ++.+++    +|++|.|++.+|+++++++++.+++++|+++++++|||+|+++++    +++.+++|++||+|+ |.||+
T Consensus        77 v~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~~~~~~----~~~~~~~~~~rvig~gt~ld~  152 (309)
T 1hyh_A           77 LGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVDVITAL----FQHVTGFPAHKVIGTGTLLDT  152 (309)
T ss_dssp             CSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHH----HHHHHCCCGGGEEECTTHHHH
T ss_pred             cCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCcHHHHHHH----HHHhcCCCHHHEeecCccchH
Confidence            999988    999999999999999999999999999999999999999998865    456678999999999 99999


Q ss_pred             HHHHHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCC-C------CChhhHHHHHHHHHhhhHHHhhhcCCCCcc
Q 022947          197 VRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S------LTPTEIDYLTDRIQNGGTEVVEAKTGAGSA  269 (289)
Q Consensus       197 ~R~~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~-~------~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t  269 (289)
                      .|+++++++.+++++++|+++++|+||+ +++|+||++.+.+ .      +++++|+++.++++++|++|++.|   |++
T Consensus       153 ~r~~~~~a~~l~~~~~~v~~~v~G~hg~-~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~k---g~~  228 (309)
T 1hyh_A          153 ARMQRAVGEAFDLDPRSVSGYNLGEHGN-SQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNGK---GYT  228 (309)
T ss_dssp             HHHHHHHHHHHTCCGGGCBCCEEBCTTT-TCEECTTTCEETTEEGGGC-----CCHHHHHHHHHHHHHHHHHHH---SSC
T ss_pred             HHHHHHHHHHhCCChhheEEEEEeCCCC-cEeeccccceECCEEHHHhccCCHHHHHHHHHHHHHhHHHHHhcc---CCc
Confidence            9999999999999999999999999998 9999999998753 1      456678999999999999999976   678


Q ss_pred             hHHHHHHHHHHHHHHhcCCC
Q 022947          270 TLSMCRHMLLPSLPMLVSEA  289 (289)
Q Consensus       270 ~~s~A~a~~~~~~ail~~~~  289 (289)
                      +|++|.++++++++|++|+.
T Consensus       229 ~~~~a~a~~~~~~ai~~~~~  248 (309)
T 1hyh_A          229 SYGVATSAIRIAKAVMADAH  248 (309)
T ss_dssp             CHHHHHHHHHHHHHHHTTCC
T ss_pred             hHHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999873

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=100.00  E-value=1e-39  Score=302.75  Aligned_cols=233  Identities=29%  Similarity=0.468  Sum_probs=203.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccC----CceEEEEecCCCHHhhhCCCCEE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----NAVVRGFLGQQQLEDALTGMDIV  118 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~----~~~v~~~~~t~d~~eal~~aDiV  118 (289)
                      +++||+|||+ |.+|+.++..|+..|+. +|+|+|+++  .++..+|+.+...    ..++..   ++|+ +++++||+|
T Consensus         3 ~~~kI~VIGa-G~~G~~ia~~la~~g~~-~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~---t~d~-~a~~~aDiV   76 (317)
T 2ewd_A            3 ERRKIAVIGS-GQIGGNIAYIVGKDNLA-DVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIG---TDDY-ADISGSDVV   76 (317)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCC-EEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE---ESCG-GGGTTCSEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCc-eEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEE---CCCH-HHhCCCCEE
Confidence            3579999998 99999999999988864 699999987  3455567666421    223443   3577 889999999


Q ss_pred             EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHH
Q 022947          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVV  197 (289)
Q Consensus       119 Iitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~  197 (289)
                      |+++|.|+++|++|.|++.+|.++++++++.+++++|+++++++|||++++++.+    ++.+++||+||+|+ |.+|+.
T Consensus        77 i~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp~~~~~~~~----~~~~~~~~~rviG~~t~ld~~  152 (317)
T 2ewd_A           77 IITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLDVMVSHF----QKVSGLPHNKVCGMAGVLDSS  152 (317)
T ss_dssp             EECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHH----HHHHCCCGGGEEESCHHHHHH
T ss_pred             EEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHH----HHhhCCCHHHEEeccCcHHHH
Confidence            9999999999999999999999999999999999999999999999999998654    55678999999999 699999


Q ss_pred             HHHHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCC----------CCChhhHHHHHHHHHhhhHHHhhhcCCCC
Q 022947          198 RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----------SLTPTEIDYLTDRIQNGGTEVVEAKTGAG  267 (289)
Q Consensus       198 R~~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~----------~~~~~~~~~i~~~v~~~g~~i~~~k~g~g  267 (289)
                      |+++++|+++|+++++++++|+|+||+ +++|+||.+++.+          .+++++++++.++++.++++++++. |+|
T Consensus       153 r~~~~la~~lg~~~~~v~~~v~g~Hg~-~~~~~~~~a~v~g~~~~~~~~~g~~~~~~id~~~~~~~~~~~ei~~~~-g~g  230 (317)
T 2ewd_A          153 RFRTFIAQHFGVNASDVSANVIGGHGD-GMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVADNL-KTG  230 (317)
T ss_dssp             HHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHH-SSS
T ss_pred             HHHHHHHHHhCcChhhceEEEEecCCC-ceeEEeeccccCCEEHHHHHhccCCCHHHHHHHHHHHHhhHHHHHHhh-cCC
Confidence            999999999999999999999999998 8999999997643          2567778999999999999999974 678


Q ss_pred             cchHHHHHHHHHHHHHHhcCCC
Q 022947          268 SATLSMCRHMLLPSLPMLVSEA  289 (289)
Q Consensus       268 ~t~~s~A~a~~~~~~ail~~~~  289 (289)
                      +++|++|.++++++++|++|+.
T Consensus       231 ~~~~~~a~a~~~~~~ai~~~~~  252 (317)
T 2ewd_A          231 TAYFAPAAAAVKMAEAYLKDKK  252 (317)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCC
T ss_pred             chHHHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999863

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=100.00  E-value=2.3e-36  Score=281.00  Aligned_cols=235  Identities=23%  Similarity=0.360  Sum_probs=197.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCc-----cEEEEEeCCC----chhHHhhhhcccCCceEEEEecCCCHHhhhCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLV-----SVLHLYDVVN----TPGVTADISHMDTNAVVRGFLGQQQLEDALTGM  115 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~-----~eI~LvD~~~----~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~a  115 (289)
                      ++|||+|+||+|+||++++..|+..|+.     .+|+++|+++    ..+.++|+.|.... .+..+..+.+++++++++
T Consensus         3 ~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~-~~~di~~~~~~~~a~~~~   81 (327)
T 1y7t_A            3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFP-LLAGLEATDDPKVAFKDA   81 (327)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCT-TEEEEEEESCHHHHTTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhccccc-ccCCeEeccChHHHhCCC
Confidence            4579999999999999999999988864     4999999874    35667888875321 122222335677899999


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhC-CCCCCcEEEeee
Q 022947          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVG-TYDPKRLLGVTM  193 (289)
Q Consensus       116 DiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~-~~~~~kviG~t~  193 (289)
                      |+||++||.+++++++|.+++..|+++++++++.+++++ |+++++++|||+|.++++.    ++.+ ++||.+++|.|.
T Consensus        82 D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~~~~----~~~~~~~~p~~~yg~tk  157 (327)
T 1y7t_A           82 DYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIA----YKNAPGLNPRNFTAMTR  157 (327)
T ss_dssp             SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH----HHTCTTSCGGGEEECCH
T ss_pred             CEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhHHHH----HHHcCCCChhheeccch
Confidence            999999999998999999999999999999999999998 9999999999999888754    3445 699999999999


Q ss_pred             ccHHHHHHHHHHHcCCCCccee-eeEEcccCCCeeeeecccccCCCC-----CChhh-HHHHHHHHHhhhHHHhhhcCCC
Q 022947          194 LDVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPSCS-----LTPTE-IDYLTDRIQNGGTEVVEAKTGA  266 (289)
Q Consensus       194 lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg~~~~vp~~S~~~v~~~-----~~~~~-~~~i~~~v~~~g~~i~~~k~g~  266 (289)
                      +|+.|+++.+++.+|+++..++ .+|+|+|++ +++|.|+++.+.+.     ++++. ++++.++++++|++|++.| | 
T Consensus       158 l~~er~~~~~a~~~g~~~~~vr~~~V~G~h~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~v~~~g~~ii~~k-g-  234 (327)
T 1y7t_A          158 LDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSS-TMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQAR-G-  234 (327)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGEECCEEEBCSST-TCEEECSSCEETTEEGGGTSCHHHHHHTHHHHHHHHHHHHHHHH-S-
T ss_pred             HHHHHHHHHHHHHhCcChhheeeeEEEcCCCC-eEEEEeeeeeeCCeeHHHhccchhHHHHHHHHHHHHHHHHHHcc-C-
Confidence            9999999999999999999999 579999997 89999999877531     23332 4899999999999999998 3 


Q ss_pred             CcchHHHHHHHHHHHHHHhcC
Q 022947          267 GSATLSMCRHMLLPSLPMLVS  287 (289)
Q Consensus       267 g~t~~s~A~a~~~~~~ail~~  287 (289)
                      +++++++|.|+++++++|++|
T Consensus       235 ~~~~~~~a~a~~~~~~~i~~~  255 (327)
T 1y7t_A          235 ASSAASAANAAIEHIRDWALG  255 (327)
T ss_dssp             SCCHHHHHHHHHHHHHHHHTB
T ss_pred             CCchHHHHHHHHHHHHHHHcC
Confidence            344567889999999999998

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=100.00  E-value=5.8e-35  Score=280.29  Aligned_cols=228  Identities=14%  Similarity=0.123  Sum_probs=174.3

Q ss_pred             CCEEEEEcCCCccHHHHH--HHHHh--CCC-ccEEEEEeCCC--chhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEE
Q 022947           46 GFKVAVLGAAGGIGQPLA--MLMKI--NPL-VSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIV  118 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la--~~L~~--~g~-~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiV  118 (289)
                      ++||+|||| |++ .+..  ..|+.  .++ .+||+|+|+++  .++ +.|+.+.......+.. .++|++++++|||+|
T Consensus         2 ~~KI~IIGa-G~v-~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~-~~~~~~~~~~~~~~v~-~t~d~~~al~~AD~V   77 (417)
T 1up7_A            2 HMRIAVIGG-GSS-YTPELVKGLLDISEDVRIDEVIFYDIDEEKQKI-VVDFVKRLVKDRFKVL-ISDTFEGAVVDAKYV   77 (417)
T ss_dssp             CCEEEEETT-TCT-THHHHHHHHHHHTTTSCCCEEEEECSCHHHHHH-HHHHHHHHHTTSSEEE-ECSSHHHHHTTCSEE
T ss_pred             CCEEEEECC-CHH-HHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHH-HHHHHHHHhhCCeEEE-EeCCHHHHhCCCCEE
Confidence            579999999 887 3332  34455  666 88999999987  222 4555553211112322 356888999999999


Q ss_pred             EEcCCCCCCCCCchhh--------------------HHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHH
Q 022947          119 IIPAGVPRKPGMTRDD--------------------LFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFK  178 (289)
Q Consensus       119 Iitag~~~~~g~~r~d--------------------~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~  178 (289)
                      |+++|++++++++|.+                    +..+|+++++++++.|+++| |||+|++|||+|++|++    ++
T Consensus        78 iitagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~~-~A~lin~TNPvdi~t~a----~~  152 (417)
T 1up7_A           78 IFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTS-NATIVNFTNPSGHITEF----VR  152 (417)
T ss_dssp             EECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTT-CCEEEECSSSHHHHHHH----HH
T ss_pred             EEcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHHC-CEEEEEeCChHHHHHHH----HH
Confidence            9999999988888742                    35899999999999999999 99999999999999865    46


Q ss_pred             HhCCCCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEEc-----------ccCCCeeeeecccc---cCCC----CC
Q 022947          179 KVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG-----------GHAGVTILPLLSQV---KPSC----SL  240 (289)
Q Consensus       179 ~~~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~G-----------~hg~~~~vp~~S~~---~v~~----~~  240 (289)
                      +.+  |++||||+|..- .|+++.+|+.+|+++++|+++|+|           +||+ +++|.||..   ++.+    .+
T Consensus       153 k~~--p~~rviG~c~~~-~r~~~~la~~lgv~~~~v~~~v~GlNH~~w~~~~~~hG~-d~~p~~~~~~~~~~~~~~~~~~  228 (417)
T 1up7_A          153 NYL--EYEKFIGLCNVP-INFIREIAEMFSARLEDVFLKYYGLNHLSFIEKVFVKGE-DVTEKVFENLKLKLSNIPDEDF  228 (417)
T ss_dssp             HTT--CCSSEEECCSHH-HHHHHHHHHHTTCCGGGEEEEEEEETTEEEEEEEEETTE-ECHHHHHHHHTTC---CCTTSC
T ss_pred             HhC--CCCCEEEeCCCH-HHHHHHHHHHhCCCHHHCeEEEEeecceeeEEEeecCCc-EehhhHHHHHHHhhCCCcCCch
Confidence            654  778999998542 499999999999999999999999           9998 899999985   3321    22


Q ss_pred             ---------------------ChhhHHHH---------HHHHHhhhHHHh--------hhcCCCCcchHHHHHHHHHHHH
Q 022947          241 ---------------------TPTEIDYL---------TDRIQNGGTEVV--------EAKTGAGSATLSMCRHMLLPSL  282 (289)
Q Consensus       241 ---------------------~~~~~~~i---------~~~v~~~g~~i~--------~~k~g~g~t~~s~A~a~~~~~~  282 (289)
                                           +++.++++         .+++++++++++        ++. ++|++.|  +.+++++++
T Consensus       229 ~~~~~~~~g~~p~~y~~~y~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~~~~~~~~~l~-~kg~t~~--~~~a~~ii~  305 (417)
T 1up7_A          229 PTWFYDSVRLIVNPYLRYYLMEKKMFKKISTHELRAREVMKIEKELFEKYRTAVEIPEELT-KRGGSMY--STAAAHLIR  305 (417)
T ss_dssp             CHHHHHHHCSEECGGGHHHHTHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTTCSSCCGGGG-GSTTTTH--HHHHHHHHH
T ss_pred             HHHHHHhcCCCccchhhhccCCHHHHHhccccchHHHHHHHHHHHHHHHHHhhcccchhhh-hcCCcHH--HHHHHHHHH
Confidence                                 12333444         578888899998        322 3456644  999999999


Q ss_pred             HHhcCCC
Q 022947          283 PMLVSEA  289 (289)
Q Consensus       283 ail~~~~  289 (289)
                      ||++|+.
T Consensus       306 AI~~d~~  312 (417)
T 1up7_A          306 DLETDEG  312 (417)
T ss_dssp             HHHSSSC
T ss_pred             HHHcCCC
Confidence            9999973

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=100.00  E-value=1.1e-33  Score=261.04  Aligned_cols=231  Identities=23%  Similarity=0.393  Sum_probs=197.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccC---CceEEEEecCCCHHhhhCCCCEEE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT---NAVVRGFLGQQQLEDALTGMDIVI  119 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~---~~~v~~~~~t~d~~eal~~aDiVI  119 (289)
                      ++|||+|||+ |.||+.++..|+..|+.++|+|+|+++  .++.++|+.+...   ...+..   ++++ +++++||+||
T Consensus         6 ~~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~~-~~~~~aD~Vi   80 (319)
T 1lld_A            6 KPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDG---SDDP-EICRDADMVV   80 (319)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEE---ESCG-GGGTTCSEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEe---CCCH-HHhCCCCEEE
Confidence            4579999998 999999999999999878999999986  3445666665431   123332   2354 7899999999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHH
Q 022947          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVR  198 (289)
Q Consensus       120 itag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R  198 (289)
                      ++++.++++|++|.|++.+|+++++++++.+++++|+++|++++||++.+++++    ++.+++|++||+|. |.+|+.|
T Consensus        81 i~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np~~~~~~~~----~~~~~~~~~~vig~~~~l~~~r  156 (319)
T 1lld_A           81 ITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDIATHVA----QKLTGLPENQIFGSGTNLDSAR  156 (319)
T ss_dssp             ECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHH----HHHHTCCTTSEEECTTHHHHHH
T ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCchHHHHHHH----HHhcCCCHHHEeeccccHhHHH
Confidence            999999999999999999999999999999999999999999999999988654    44568999999998 8999999


Q ss_pred             HHHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCCC-------------CChhhHHHHHHHHHhhhHHHhhhcCC
Q 022947          199 ANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS-------------LTPTEIDYLTDRIQNGGTEVVEAKTG  265 (289)
Q Consensus       199 ~~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~-------------~~~~~~~~i~~~v~~~g~~i~~~k~g  265 (289)
                      ++..+++++++++.+++.+++|+||+ +++|+||.+.+++.             .+++.++++.+++++.+++|++.|  
T Consensus       157 ~~~~~a~~~~v~~~~v~~~~~G~~g~-~~~~~w~k~~in~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~v~~~~--  233 (319)
T 1lld_A          157 LRFLIAQQTGVNVKNVHAYIAGEHGD-SEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIINGK--  233 (319)
T ss_dssp             HHHHHHHHHTCCGGGEECCEEBSSST-TCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHTSC--
T ss_pred             HHHHHHHHhCCCHHHeEEEEEeCCCC-ceeeeeecceECCccHHHHHhccccccCCHHHHHHHHHHHHHhhHhhhhCC--
Confidence            99999999999999999999999998 89999999876421             123347899999999999999965  


Q ss_pred             CCcchHHHHHHHHHHHHHHhcCC
Q 022947          266 AGSATLSMCRHMLLPSLPMLVSE  288 (289)
Q Consensus       266 ~g~t~~s~A~a~~~~~~ail~~~  288 (289)
                       |++.++++.+.++|+++|++|.
T Consensus       234 -G~~~~~~a~~~~sm~~di~~~~  255 (319)
T 1lld_A          234 -GATNYAIGMSGVDIIEAVLHDT  255 (319)
T ss_dssp             -CSCCHHHHHHHHHHHHHHHTTC
T ss_pred             -CCchHHHHHHHHHHHHHHHcCC
Confidence             5678999999999999999875

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=100.00  E-value=2.8e-34  Score=277.92  Aligned_cols=232  Identities=14%  Similarity=0.145  Sum_probs=176.1

Q ss_pred             CCEEEEEcCCCcc-HHHHHHHHHh--CCC-ccEEEEEeCCC--chhH-Hhhhhcc-----cCCceEEEEecCCCHHhhhC
Q 022947           46 GFKVAVLGAAGGI-GQPLAMLMKI--NPL-VSVLHLYDVVN--TPGV-TADISHM-----DTNAVVRGFLGQQQLEDALT  113 (289)
Q Consensus        46 ~~KI~IIGaaG~V-Gs~la~~L~~--~g~-~~eI~LvD~~~--~~g~-~~DL~~~-----~~~~~v~~~~~t~d~~eal~  113 (289)
                      ++||+|||| |++ |..++..|+.  .++ .+||+|+|+++  .+.. ..|+.+.     ....++..   ++|++++++
T Consensus         7 ~~KIaVIGa-Gsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~---t~D~~eal~   82 (450)
T 1s6y_A            7 RLKIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHL---TLDRRRALD   82 (450)
T ss_dssp             CEEEEEETT-TCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEE---ESCHHHHHT
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEE---eCCHHHHhC
Confidence            479999999 998 7777766776  566 78999999987  3221 1233221     12234443   468889999


Q ss_pred             CCCEEEEcCCCCCCCCCchhhH--------------------HHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHH
Q 022947          114 GMDIVIIPAGVPRKPGMTRDDL--------------------FNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIA  173 (289)
Q Consensus       114 ~aDiVIitag~~~~~g~~r~d~--------------------~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~  173 (289)
                      |||+||+++|.++++|++|+++                    +.+|+++++++++.|+++||+||+|++|||+|++|++ 
T Consensus        83 gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~a~ii~~tNPvdivT~a-  161 (450)
T 1s6y_A           83 GADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEA-  161 (450)
T ss_dssp             TCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHH-
T ss_pred             CCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHH-
Confidence            9999999999999888888644                    7899999999999999999999999999999999865 


Q ss_pred             HHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEEc-----------ccCCCeeeeecccccCC----C
Q 022947          174 AEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG-----------GHAGVTILPLLSQVKPS----C  238 (289)
Q Consensus       174 ~~~~~~~~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~G-----------~hg~~~~vp~~S~~~v~----~  238 (289)
                         +++.+  |++||||+|... .|+++.+|+.||+++++|+++|+|           +||+ +++|.|+.....    +
T Consensus       162 ---~~k~~--p~~rViG~c~~~-~r~~~~la~~lgv~~~~v~~~v~GlNH~~w~~~v~~~G~-d~~p~~~~~~~~~~~~g  234 (450)
T 1s6y_A          162 ---VLRYT--KQEKVVGLCNVP-IGMRMGVAKLLGVDADRVHIDFAGLNHMVFGLHVYLDGV-EVTEKVIDLVAHPDRSG  234 (450)
T ss_dssp             ---HHHHC--CCCCEEECCSHH-HHHHHHHHHHHTSCGGGEEEEEEEETTEEEEEEEEETTE-ECHHHHHHHHSCC----
T ss_pred             ---HHHhC--CCCCEEEeCCcH-HHHHHHHHHHhCCCHHHcEEEEEeeecceeEEEeeeCCc-CchHhHHHHHhhhcccc
Confidence               46664  778999998653 599999999999999999999999           9998 899999874321    0


Q ss_pred             ---------CCC---------------------hh-------------hHHHHHHHHHhhhHHHh-----hhcCCC--Cc
Q 022947          239 ---------SLT---------------------PT-------------EIDYLTDRIQNGGTEVV-----EAKTGA--GS  268 (289)
Q Consensus       239 ---------~~~---------------------~~-------------~~~~i~~~v~~~g~~i~-----~~k~g~--g~  268 (289)
                               .+.                     ++             .+.++.+++++.+++|+     +.|...  +.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~g~~p~~y~~yy~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ei~~~~~~~~k~~~~~~~  314 (450)
T 1s6y_A          235 VTMKNIVDLGWEPDFLKGLKVLPCPYHRYYFQTDKMLAEELEAAKTKGTRAEVVQQLEKELFELYKDPNLAIKPPQLEKR  314 (450)
T ss_dssp             --------CCCCHHHHHHHCSBCCGGGHHHHSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTCC-----------C
T ss_pred             ccccccccCccHHHHHHhcCCccchhhhhhcCCHHHHHhhhccccccchHHHHHHHHHHHHHHHHhhhccccccchhhcc
Confidence                     111                     12             12356778889999999     544200  02


Q ss_pred             chHHHHHHHHHHHHHHhcCCC
Q 022947          269 ATLSMCRHMLLPSLPMLVSEA  289 (289)
Q Consensus       269 t~~s~A~a~~~~~~ail~~~~  289 (289)
                      +++++|.+++++++||++|+.
T Consensus       315 ~~~~~~~~a~~ii~AI~~d~~  335 (450)
T 1s6y_A          315 GGAYYSDAACSLISSIYNDKR  335 (450)
T ss_dssp             CSCCHHHHHHHHHHHHHHTCC
T ss_pred             cchHHHHHHHHHHHHHHcCCC
Confidence            333567999999999999973

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=100.00  E-value=2.1e-33  Score=273.09  Aligned_cols=176  Identities=19%  Similarity=0.288  Sum_probs=144.7

Q ss_pred             CCEEEEEcCCCcc-HHHHHHHHHhC--CC-ccEEEEEeCCC--chhHHhhhhccc-----CCceEEEEecCCCHHhhhCC
Q 022947           46 GFKVAVLGAAGGI-GQPLAMLMKIN--PL-VSVLHLYDVVN--TPGVTADISHMD-----TNAVVRGFLGQQQLEDALTG  114 (289)
Q Consensus        46 ~~KI~IIGaaG~V-Gs~la~~L~~~--g~-~~eI~LvD~~~--~~g~~~DL~~~~-----~~~~v~~~~~t~d~~eal~~  114 (289)
                      ++||+|||| |++ |..++..|+.+  ++ ..||+|+|+++  .++ ..|+.+..     ...++..   ++|++++++|
T Consensus        28 ~~KIaVIGa-Gsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~-~~~~~~~~l~~~~~~~~I~~---t~D~~eal~~  102 (472)
T 1u8x_X           28 SFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDR-IAGACDVFIREKAPDIEFAA---TTDPEEAFTD  102 (472)
T ss_dssp             CEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHH-HHHHHHHHHHHHCTTSEEEE---ESCHHHHHSS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHH-HHHHHHHHhccCCCCCEEEE---ECCHHHHHcC
Confidence            469999999 998 55567777776  66 78999999987  233 23444321     2334543   4688899999


Q ss_pred             CCEEEEcCCCCCCCCCchhhH--------------------HHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHH
Q 022947          115 MDIVIIPAGVPRKPGMTRDDL--------------------FNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAA  174 (289)
Q Consensus       115 aDiVIitag~~~~~g~~r~d~--------------------~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~  174 (289)
                      ||+||+++|.+++++++|+++                    +.+|+++++++++.|+++||+||+|++|||+|++|++  
T Consensus       103 AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~T~~--  180 (472)
T 1u8x_X          103 VDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEA--  180 (472)
T ss_dssp             CSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHH--
T ss_pred             CCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHH--
Confidence            999999999988888777444                    7899999999999999999999999999999999865  


Q ss_pred             HHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHcCCCC-cceeeeEEc-----------c-cCCCeeeeecccc
Q 022947          175 EVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDP-REVDVPVVG-----------G-HAGVTILPLLSQV  234 (289)
Q Consensus       175 ~~~~~~~~~~~~kviG~t~lds~R~~~~lA~~l~v~~-~~V~~~V~G-----------~-hg~~~~vp~~S~~  234 (289)
                        +++.+  |++||||+|... .|+++.+|+.||+++ ++|+++|+|           + ||+ +++|.||..
T Consensus       181 --~~k~~--p~~rViG~c~~~-~r~~~~la~~lgv~~~~~v~~~v~GlNH~~W~~~~~~~hG~-d~~p~~~~~  247 (472)
T 1u8x_X          181 --TRRLR--PNSKILNICDMP-VGIEDRMAQILGLSSRKEMKVRYYGLNHFGWWTSIQDQEGN-DLMPKLKEH  247 (472)
T ss_dssp             --HHHHS--TTCCEEECCSHH-HHHHHHHHHHHTCSCGGGEEEEEEEETTEEEEEEEEETTCC-BCHHHHHHH
T ss_pred             --HHHhC--CCCCEEEeCCcH-HHHHHHHHHHhCcCchhceeEEEeccchhhheeeeEeCCCC-EehHhHHHH
Confidence              46664  888999998653 499999999999998 999999999           8 998 899999874

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=99.93  E-value=5.1e-26  Score=221.28  Aligned_cols=166  Identities=25%  Similarity=0.283  Sum_probs=126.9

Q ss_pred             CCCEEEEEcCCCccHHHH--HHHHHhC-CC-ccEEEEEeCCC--chhHHhhhhcc-----cCCceEEEEecCCCHHhhhC
Q 022947           45 PGFKVAVLGAAGGIGQPL--AMLMKIN-PL-VSVLHLYDVVN--TPGVTADISHM-----DTNAVVRGFLGQQQLEDALT  113 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~l--a~~L~~~-g~-~~eI~LvD~~~--~~g~~~DL~~~-----~~~~~v~~~~~t~d~~eal~  113 (289)
                      +++||+|||| |.||++.  +..|+.. ++ ..||+|+|+++  .++ +.++.+.     ....+++.   ++|++++++
T Consensus         2 ~~~KIaVIGA-GsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~-~~~~~~~~l~~~~~~~~I~~---ttD~~eal~   76 (480)
T 1obb_A            2 PSVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDA-ILTIAKKYVEEVGADLKFEK---TMNLDDVII   76 (480)
T ss_dssp             CCCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHH-HHHHHHHHHHHTTCCCEEEE---ESCHHHHHT
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHH-HHHHHHHHhccCCCCcEEEE---ECCHHHHhC
Confidence            3579999998 9987655  5567643 33 56999999987  222 2222221     12234443   468889999


Q ss_pred             CCCEEEEcCCC------------CCCCCCch--hh------------HHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 022947          114 GMDIVIIPAGV------------PRKPGMTR--DD------------LFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (289)
Q Consensus       114 ~aDiVIitag~------------~~~~g~~r--~d------------~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd  167 (289)
                      |||+||+++|.            |.|+|..|  .|            ++.+|+++++++++.|+++||+||+|++|||+|
T Consensus        77 dAD~VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvd  156 (480)
T 1obb_A           77 DADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIF  156 (480)
T ss_dssp             TCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHH
T ss_pred             CCCEEEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHH
Confidence            99999999986            44555544  33            478999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEEcccCC
Q 022947          168 STVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG  224 (289)
Q Consensus       168 ~~t~~~~~~~~~~~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~G~hg~  224 (289)
                      ++|+++    ++   +|++||||+|.++. ++++++ +.+|+++++|+++|+|-+|-
T Consensus       157 i~t~~~----~k---~p~~rviG~c~~~~-~~~~~l-~~lgv~~~~v~~~v~GlNH~  204 (480)
T 1obb_A          157 EGTTLV----TR---TVPIKAVGFCHGHY-GVMEIV-EKLGLEEEKVDWQVAGVNHG  204 (480)
T ss_dssp             HHHHHH----HH---HSCSEEEEECSGGG-HHHHHH-HHTTCCGGGEEEEEEEETTE
T ss_pred             HHHHHH----HH---CCCCcEEecCCCHH-HHHHHH-HHhCCCHHHceEEEEeecch
Confidence            998654    54   78999999985443 378999 99999999999999995543

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=99.92  E-value=6.5e-25  Score=211.99  Aligned_cols=176  Identities=23%  Similarity=0.339  Sum_probs=135.8

Q ss_pred             CCCEEEEEcCCCccH--HHHHHHHHhCC-CccEEEEEeCCCch----hHHhhhhcccCCceEEEEecCCCHHhhhCCCCE
Q 022947           45 PGFKVAVLGAAGGIG--QPLAMLMKINP-LVSVLHLYDVVNTP----GVTADISHMDTNAVVRGFLGQQQLEDALTGMDI  117 (289)
Q Consensus        45 ~~~KI~IIGaaG~VG--s~la~~L~~~g-~~~eI~LvD~~~~~----g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDi  117 (289)
                      +++||+|||| |++|  ..++..|+... +..+|+|+|+++..    ....+....   ...+. ..|+|+++|++|||+
T Consensus         4 ~~~KIaVIGa-Gs~g~g~~la~~l~~~~~~~geV~L~Di~~e~le~~~~~~~~l~~---~~~~I-~~TtD~~eAl~dADf   78 (450)
T 3fef_A            4 DQIKIAYIGG-GSQGWARSLMSDLSIDERMSGTVALYDLDFEAAQKNEVIGNHSGN---GRWRY-EAVSTLKKALSAADI   78 (450)
T ss_dssp             CCEEEEEETT-TCSSHHHHHHHHHHHCSSCCEEEEEECSSHHHHHHHHHHHTTSTT---SCEEE-EEESSHHHHHTTCSE
T ss_pred             CCCEEEEECC-ChhHhHHHHHHHHHhccccCCeEEEEeCCHHHHHHHHHHHHHHhc---cCCeE-EEECCHHHHhcCCCE
Confidence            4579999998 9985  56666666533 33599999998721    222222111   22332 236789999999999


Q ss_pred             EEEcCC------------CCCCCCCchh--hHH--------HhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHH
Q 022947          118 VIIPAG------------VPRKPGMTRD--DLF--------NINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE  175 (289)
Q Consensus       118 VIitag------------~~~~~g~~r~--d~~--------~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~  175 (289)
                      ||+++.            .|+|+|..|.  |..        .+|+++++++++.|+++||+||+|++|||+|++|+++  
T Consensus        79 VI~airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p~a~~i~~tNPvdi~t~~~--  156 (450)
T 3fef_A           79 VIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVL--  156 (450)
T ss_dssp             EEECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHH--
T ss_pred             EEeccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHH--
Confidence            999985            5888888776  544        4999999999999999999999999999999998654  


Q ss_pred             HHHHhCCCCCCcEEEeeeccHHHHHHHHHHHc----C---CCCcceeeeEEc-ccCCCeeeeecccccCC
Q 022947          176 VFKKVGTYDPKRLLGVTMLDVVRANTFVAEVL----G---LDPREVDVPVVG-GHAGVTILPLLSQVKPS  237 (289)
Q Consensus       176 ~~~~~~~~~~~kviG~t~lds~R~~~~lA~~l----~---v~~~~V~~~V~G-~hg~~~~vp~~S~~~v~  237 (289)
                        ++.  +|+.||||+|..- .++++.+|+.|    |   +++++|+..++| +|     +.+|+.++..
T Consensus       157 --~k~--~p~~rviG~C~~~-~~~~~~~a~~l~~~lg~~~~~~~~v~~~~~GlNH-----~~w~~~~~~~  216 (450)
T 3fef_A          157 --YKV--FPGIKAIGCCHEV-FGTQKLLAEMVTERLGIEVPRREDIRVNVLGINH-----FTWITKASYR  216 (450)
T ss_dssp             --HHH--CTTCEEEECCSHH-HHHHHHHHHHHHHHHCCCCSCGGGEEEEEEEETT-----EEEEEEEEET
T ss_pred             --HHH--CCCCCEEEeCCcH-HHHHHHHHHHHHhhcCCCCCChhHeEEEEeeecC-----eEeEEEEEEC
Confidence              444  7889999999764 78999999999    5   779999999999 55     5566666553

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=99.92  E-value=2.7e-25  Score=216.59  Aligned_cols=175  Identities=24%  Similarity=0.250  Sum_probs=131.5

Q ss_pred             CEEEEEcCCCccHHHHH--HHHHhCC----CccEEEEEeCCC--chhHHhhhhcccC--CceEEEEecCCCHHhhhCCCC
Q 022947           47 FKVAVLGAAGGIGQPLA--MLMKINP----LVSVLHLYDVVN--TPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMD  116 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la--~~L~~~g----~~~eI~LvD~~~--~~g~~~DL~~~~~--~~~v~~~~~t~d~~eal~~aD  116 (289)
                      |||+|||| |++|.+..  ..++...    ...||+|+|+++  +++...++.+...  ....+.. .|+|+++|++|||
T Consensus         1 mKI~iIGa-Gs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~~~~~~i~-~t~d~~eAl~gAD   78 (477)
T 3u95_A            1 MKISIVGA-GSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEELNSPVKVV-KTESLDEAIEGAD   78 (477)
T ss_dssp             CEEEEETT-TSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHHHTCCCEEE-EESCHHHHHTTCS
T ss_pred             CEEEEECC-CchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHHcCCCeEEE-EeCCHHHHhCCCC
Confidence            69999999 99998753  2344432    346999999998  4555555555421  2233332 3578999999999


Q ss_pred             EEEEcCCC-------------------CCCCCCchhhHH---------------HhhHHHHHHHHHHHHHhCCCcEEEEe
Q 022947          117 IVIIPAGV-------------------PRKPGMTRDDLF---------------NINAGIVKTLCEGIAKCCPKAIVNLI  162 (289)
Q Consensus       117 iVIitag~-------------------~~~~g~~r~d~~---------------~~N~~i~~~i~~~i~~~~p~aiviv~  162 (289)
                      +||+++|.                   |+|+|++|.++.               .+|++++.++++.|+++|||||+|++
T Consensus        79 ~Vi~~~g~~~~Rvg~~~~r~~de~~~ip~k~G~~~~~l~qet~g~gG~~~~lR~~~~i~v~~~i~~~i~~~~P~A~~in~  158 (477)
T 3u95_A           79 FIINTAYPYDPRYHDSGSQRWDEVTKVGEKHGYYRGIDSQELNMVSTYTYVLSSYPDVKLALEIAEKMKKMAPKAYLMQT  158 (477)
T ss_dssp             EEEECCCCCCTTTCSSHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTSCSTTTTHHHHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred             EEEECcccccccccccccccceeeeccCcccceeecccccccCCccchhHHHhhhhhHHHHHHHHHHHHhhCCCeEEEEe
Confidence            99999875                   336676665542               35899999999999999999999999


Q ss_pred             cCCCcccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEEcccCCCeeeeeccc
Q 022947          163 SNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ  233 (289)
Q Consensus       163 tNPvd~~t~~~~~~~~~~~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~  233 (289)
                      |||++++|+.+    ++.++   .|++|+|+--  +....+++.||+++++|+..+.|.||. +.+..|+.
T Consensus       159 tNP~~i~t~a~----~~~~~---~k~vGlC~~~--~~~~~~~~~Lg~~~~~v~~~~~GlNH~-~w~~~~~~  219 (477)
T 3u95_A          159 ANPVFEITQAV----RRWTG---ANIIGFCHGV--AGVYEVFERLGLDPEEVDWQVAGVNHG-IWLNRFRY  219 (477)
T ss_dssp             SSCHHHHHHHH----HHHHC---CCEEEECCGG--GHHHHHHHHTTCCGGGEEEEEEEETTE-EEEEEEEE
T ss_pred             cChHHHHHHHH----HHhCC---CCeEEECCCH--HHHHHHHHHhCCCHHHcEEEEeecCCC-eeeeeeee
Confidence            99999999654    44444   6899999632  334567788999999999999999997 77666553

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=98.96  E-value=6.5e-10  Score=102.83  Aligned_cols=119  Identities=13%  Similarity=0.185  Sum_probs=86.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-c--hhH--H----hhhhcccC----------CceEEEEecCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGV--T----ADISHMDT----------NAVVRGFLGQQ  106 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~--~g~--~----~DL~~~~~----------~~~v~~~~~t~  106 (289)
                      ..||+|||| |.+|+.+|..++..|+  +|+|+|+++ .  .+.  +    ..+.....          ..++.   .++
T Consensus         6 ~~~VaViGa-G~MG~giA~~~a~~G~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~---~~~   79 (319)
T 3ado_A            6 AGDVLIVGS-GLVGRSWAMLFASGGF--RVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLIS---SCT   79 (319)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEE---EEC
T ss_pred             CCeEEEECC-cHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcc---ccc
Confidence            358999998 9999999999999999  999999987 1  111  1    11111100          11233   346


Q ss_pred             CHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCC
Q 022947          107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (289)
Q Consensus       107 d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~  185 (289)
                      |+.+++++||+||.++              .+|+++.+++.++|.+++ |++++  +||.+.+...   +. ...+ -.|
T Consensus        80 ~l~~a~~~ad~ViEav--------------~E~l~iK~~lf~~l~~~~~~~aIl--aSNTSsl~is---~i-a~~~-~~p  138 (319)
T 3ado_A           80 NLAEAVEGVVHIQECV--------------PENLDLKRKIFAQLDSIVDDRVVL--SSSSSCLLPS---KL-FTGL-AHV  138 (319)
T ss_dssp             CHHHHTTTEEEEEECC--------------CSCHHHHHHHHHHHHTTCCSSSEE--EECCSSCCHH---HH-HTTC-TTG
T ss_pred             chHhHhccCcEEeecc--------------ccHHHHHHHHHHHHHHHhhhccee--ehhhhhccch---hh-hhhc-cCC
Confidence            8888999999999984              358899999999999999 67766  8999886542   22 2233 347


Q ss_pred             CcEEEe
Q 022947          186 KRLLGV  191 (289)
Q Consensus       186 ~kviG~  191 (289)
                      +|++|+
T Consensus       139 ~r~ig~  144 (319)
T 3ado_A          139 KQCIVA  144 (319)
T ss_dssp             GGEEEE
T ss_pred             CcEEEe
Confidence            899997

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=98.90  E-value=9.5e-09  Score=94.06  Aligned_cols=189  Identities=14%  Similarity=0.091  Sum_probs=101.3

Q ss_pred             hcCCCccccccccccccccccccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCc
Q 022947           18 HLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNA   97 (289)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~   97 (289)
                      |-|||+..-.-..+.+.         .++|||.|+||+|++|++++..|+..|...+|+.+|+.........+.......
T Consensus         5 ~~~~~~~~~~~~n~~~~---------~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~   75 (346)
T 4egb_A            5 HHHSSGVDLGTENLYFQ---------SNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHP   75 (346)
T ss_dssp             ----------------------------CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTTCT
T ss_pred             cccccccccCccccccc---------cCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhccCC
Confidence            66888776544444332         345799999999999999999999888444888888765222112222221122


Q ss_pred             eEEEEec----CCCHHhhhCC--CCEEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCC----
Q 022947           98 VVRGFLG----QQQLEDALTG--MDIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP----  165 (289)
Q Consensus        98 ~v~~~~~----t~d~~eal~~--aDiVIitag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNP----  165 (289)
                      .+..+.+    ..++.+++++  +|+||++||.....  ..+..+.+..|+.....+++.+.+....-+|.+.|--    
T Consensus        76 ~~~~~~~Dl~d~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vy~~  155 (346)
T 4egb_A           76 NYYFVKGEIQNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVSTDEVYGS  155 (346)
T ss_dssp             TEEEEECCTTCHHHHHHHHHHHTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEEGGGGCC
T ss_pred             CeEEEEcCCCCHHHHHHHHhhcCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCchHHhCC
Confidence            3333221    1234556666  99999999865321  1234567788999999999999987654444443310    


Q ss_pred             ---CcccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHcCCCCccee-eeEEcccC
Q 022947          166 ---VNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (289)
Q Consensus       166 ---vd~~t~~~~~~~~~~~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg  223 (289)
                         ...++        +.....+...+|.+.....++...+++..|++..-++ ..|+|...
T Consensus       156 ~~~~~~~~--------E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~  209 (346)
T 4egb_A          156 LGKTGRFT--------EETPLAPNSPYSSSKASADMIALAYYKTYQLPVIVTRCSNNYGPYQ  209 (346)
T ss_dssp             CCSSCCBC--------TTSCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTC
T ss_pred             CCcCCCcC--------CCCCCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeecceeCcCC
Confidence               00111        0111223344454544455555666677788877777 56888654

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=98.82  E-value=3.1e-08  Score=89.46  Aligned_cols=165  Identities=16%  Similarity=0.131  Sum_probs=99.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEE-EEecCCCHHhhhCCCCEEEEcCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~-~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      +|||.|+||+|++|++++..|+..|+  +|+.+++++....   +....   .+. .+. ..++.++++++|+||++|+.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~---~~~~~---~~~~Dl~-~~~~~~~~~~~d~Vih~a~~   72 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGN--TPIILTRSIGNKA---INDYE---YRVSDYT-LEDLINQLNDVDAVVHLAAT   72 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCC--------CCE---EEECCCC-HHHHHHHTTTCSEEEECCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCCCCccc---CCceE---EEEcccc-HHHHHHhhcCCCEEEEcccc
Confidence            47999999999999999999999998  9999998742111   11110   000 011 23466788999999999986


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHH
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVA  204 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t~lds~R~~~~lA  204 (289)
                      ....  +..+.+..|+...+.+++.+++....-+|.+.|--+  ...--...+.+.....|...+|.+.....++...++
T Consensus        73 ~~~~--~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS~~v--yg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~  148 (311)
T 3m2p_A           73 RGSQ--GKISEFHDNEILTQNLYDACYENNISNIVYASTISA--YSDETSLPWNEKELPLPDLMYGVSKLACEHIGNIYS  148 (311)
T ss_dssp             CCSS--SCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG--CCCGGGCSBCTTSCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred             CCCC--ChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHH--hCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHH
Confidence            5433  345567889999999999999877554444433111  000000000000112223334444444555556666


Q ss_pred             HHcCCCCccee-eeEEcccC
Q 022947          205 EVLGLDPREVD-VPVVGGHA  223 (289)
Q Consensus       205 ~~l~v~~~~V~-~~V~G~hg  223 (289)
                      +..+++..-++ ..++|...
T Consensus       149 ~~~g~~~~ilRp~~v~G~~~  168 (311)
T 3m2p_A          149 RKKGLCIKNLRFAHLYGFNE  168 (311)
T ss_dssp             HHSCCEEEEEEECEEECSCC
T ss_pred             HHcCCCEEEEeeCceeCcCC
Confidence            66777777776 55777654

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=98.77  E-value=2.4e-08  Score=91.39  Aligned_cols=153  Identities=17%  Similarity=0.207  Sum_probs=99.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchh----HHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG----VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g----~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIi  120 (289)
                      ++|||.|+||+|++|++++..|+..|+  +|+++|++....    ...|+.            ...++.++++++|+||+
T Consensus        18 ~~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~Dl~------------d~~~~~~~~~~~d~vih   83 (347)
T 4id9_A           18 GSHMILVTGSAGRVGRAVVAALRTQGR--TVRGFDLRPSGTGGEEVVGSLE------------DGQALSDAIMGVSAVLH   83 (347)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTTC--CEEEEESSCCSSCCSEEESCTT------------CHHHHHHHHTTCSEEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCC--EEEEEeCCCCCCCccEEecCcC------------CHHHHHHHHhCCCEEEE
Confidence            356899999999999999999999997  899999876320    011111            11245677899999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC-------C-CcccHHHHHHHHHHhCCCCCCcEEEee
Q 022947          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN-------P-VNSTVPIAAEVFKKVGTYDPKRLLGVT  192 (289)
Q Consensus       121 tag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN-------P-vd~~t~~~~~~~~~~~~~~~~kviG~t  192 (289)
                      +|+..........+.+..|+.....+++.+.+....-+|.+.|-       + ...++        +....++...+|.+
T Consensus        84 ~A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS~~vyg~~~~~~~~~~--------E~~~~~~~~~Y~~s  155 (347)
T 4id9_A           84 LGAFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASSGEVYPENRPEFLPVT--------EDHPLCPNSPYGLT  155 (347)
T ss_dssp             CCCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGTTTTSCSSSSBC--------TTSCCCCCSHHHHH
T ss_pred             CCcccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHHhCCCCCCCCCcC--------CCCCCCCCChHHHH
Confidence            99865433333466788899999999999988765545444441       1 11111        01123344444555


Q ss_pred             eccHHHHHHHHHHHcCCCCccee-eeEE
Q 022947          193 MLDVVRANTFVAEVLGLDPREVD-VPVV  219 (289)
Q Consensus       193 ~lds~R~~~~lA~~l~v~~~~V~-~~V~  219 (289)
                      .....++...+++..+++..-++ ..++
T Consensus       156 K~~~E~~~~~~~~~~~~~~~ilRp~~v~  183 (347)
T 4id9_A          156 KLLGEELVRFHQRSGAMETVILRFSHTQ  183 (347)
T ss_dssp             HHHHHHHHHHHHHHSSSEEEEEEECEEE
T ss_pred             HHHHHHHHHHHHHhcCCceEEEccceEe
Confidence            55555566666677788777777 5577

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=98.73  E-value=4.2e-08  Score=89.90  Aligned_cols=170  Identities=15%  Similarity=0.048  Sum_probs=104.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccC---CceEEEEe----cCCCHHhhhCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT---NAVVRGFL----GQQQLEDALTGM  115 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~---~~~v~~~~----~t~d~~eal~~a  115 (289)
                      ++|||.|+||+|++|++++..|+..|+  +|+.+|+...  .....++.....   ...+..+.    ...++.++++++
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  101 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQ--VVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGV  101 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTC
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCC
Confidence            357999999999999999999999997  9999998662  222222221100   01222221    112356778999


Q ss_pred             CEEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC-----c-ccHHHHHHHHHHhCCCCCCc
Q 022947          116 DIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV-----N-STVPIAAEVFKKVGTYDPKR  187 (289)
Q Consensus       116 DiVIitag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPv-----d-~~t~~~~~~~~~~~~~~~~k  187 (289)
                      |+||++||.....  ..+..+.+..|+.....+++.+++....-+|.+.|--+     + .++        +..-..+..
T Consensus       102 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~--------E~~~~~p~~  173 (351)
T 3ruf_A          102 DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPKV--------EENIGNPLS  173 (351)
T ss_dssp             SEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBC--------TTCCCCCCS
T ss_pred             CEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEecHHhcCCCCCCCCc--------cCCCCCCCC
Confidence            9999999864211  11234567889999999999999886554444433111     0 000        000112233


Q ss_pred             EEEeeeccHHHHHHHHHHHcCCCCccee-eeEEcccCC
Q 022947          188 LLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAG  224 (289)
Q Consensus       188 viG~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg~  224 (289)
                      .+|.+.+...++...+++..|++..-++ ..|+|....
T Consensus       174 ~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~  211 (351)
T 3ruf_A          174 PYAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQD  211 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCCEEEEECSEESTTCC
T ss_pred             hhHHHHHHHHHHHHHHHHHhCCCEEEEeeCceeCcCCC
Confidence            3444555555666666777788888887 568887643

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=98.73  E-value=6.2e-08  Score=88.20  Aligned_cols=108  Identities=21%  Similarity=0.180  Sum_probs=69.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEe----cCCCHHhhhCCCCEEEE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL----GQQQLEDALTGMDIVII  120 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~----~t~d~~eal~~aDiVIi  120 (289)
                      ++|||.|+||+|++|++++..|+..|+  +|+++|++.....  ++.+.    .+..+.    ...++.++++++|+||+
T Consensus        12 ~~M~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~l~~~----~~~~~~~Dl~d~~~~~~~~~~~d~vih   83 (342)
T 2x4g_A           12 AHVKYAVLGATGLLGHHAARAIRAAGH--DLVLIHRPSSQIQ--RLAYL----EPECRVAEMLDHAGLERALRGLDGVIF   83 (342)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECTTSCGG--GGGGG----CCEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEecChHhhh--hhccC----CeEEEEecCCCHHHHHHHHcCCCEEEE
Confidence            346999999999999999999999997  9999998763211  12211    111111    11235577899999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEE
Q 022947          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN  160 (289)
Q Consensus       121 tag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aivi  160 (289)
                      +||..........+++..|+.....+++.+.+....-+|.
T Consensus        84 ~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~  123 (342)
T 2x4g_A           84 SAGYYPSRPRRWQEEVASALGQTNPFYAACLQARVPRILY  123 (342)
T ss_dssp             C------------CHHHHHHHHHHHHHHHHHHHTCSCEEE
T ss_pred             CCccCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence            9986432223345677889999999999998876444443

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=98.69  E-value=7.7e-08  Score=98.08  Aligned_cols=118  Identities=16%  Similarity=0.244  Sum_probs=84.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-c--hhH--Hhh-h---------hccc-CCceEEEEecCCCHH
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGV--TAD-I---------SHMD-TNAVVRGFLGQQQLE  109 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~--~g~--~~D-L---------~~~~-~~~~v~~~~~t~d~~  109 (289)
                      .+||+|||| |.+|+.+|..++..|+  +|+|+|+++ .  .+.  ... +         .... ....+..   ++++ 
T Consensus       316 i~~v~ViGa-G~MG~gIA~~~a~aG~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~-  388 (742)
T 3zwc_A          316 VSSVGVLGL-GTMGRGIAISFARVGI--SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF---SSST-  388 (742)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEE---ESCG-
T ss_pred             ccEEEEEcc-cHHHHHHHHHHHhCCC--chhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcc---cCcH-
Confidence            479999998 9999999999999999  999999987 1  111  100 0         0000 1223332   3465 


Q ss_pred             hhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcE
Q 022947          110 DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRL  188 (289)
Q Consensus       110 eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kv  188 (289)
                      +++++||+||.++              .+|+++.+++.+++++++ |++++  +||.+.+-..   ++ ...+ -.|+|+
T Consensus       389 ~~l~~aDlVIEAV--------------~E~l~iK~~vf~~le~~~~~~aIl--ASNTSsl~i~---~i-a~~~-~~p~r~  447 (742)
T 3zwc_A          389 KELSTVDLVVEAV--------------FEDMNLKKKVFAELSALCKPGAFL--CTNTSALNVD---DI-ASST-DRPQLV  447 (742)
T ss_dssp             GGGGSCSEEEECC--------------CSCHHHHHHHHHHHHHHSCTTCEE--EECCSSSCHH---HH-HTTS-SCGGGE
T ss_pred             HHHhhCCEEEEec--------------cccHHHHHHHHHHHhhcCCCCceE--EecCCcCChH---HH-Hhhc-CCcccc
Confidence            7799999999985              358899999999999998 67766  8999886432   22 2333 357899


Q ss_pred             EEe
Q 022947          189 LGV  191 (289)
Q Consensus       189 iG~  191 (289)
                      +|+
T Consensus       448 ig~  450 (742)
T 3zwc_A          448 IGT  450 (742)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            997

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=98.68  E-value=9.3e-08  Score=86.01  Aligned_cols=161  Identities=19%  Similarity=0.157  Sum_probs=99.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEE--EEecCCCHHhhhCCCCEEEEcCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR--GFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~--~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      |||.|+||+|++|++++..|+..|+  +|+++|++.....  +.....  ....  .+... ++.+++++ |+||++||.
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~~--~~~~~~Dl~d~-~~~~~~~~-d~vih~A~~   72 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGY--EVVVVDNLSSGRR--EFVNPS--AELHVRDLKDY-SWGAGIKG-DVVFHFAAN   72 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCCSSCCG--GGSCTT--SEEECCCTTST-TTTTTCCC-SEEEECCSS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC--EEEEEeCCCCCch--hhcCCC--ceEEECccccH-HHHhhcCC-CEEEECCCC
Confidence            6899999999999999999999998  9999998652111  011110  0110  01111 14456666 999999986


Q ss_pred             CCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC------cccHHHHHHHHHHhCCCCCCcEEEeeeccH
Q 022947          125 PRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV------NSTVPIAAEVFKKVGTYDPKRLLGVTMLDV  196 (289)
Q Consensus       125 ~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPv------d~~t~~~~~~~~~~~~~~~~kviG~t~lds  196 (289)
                      +...  ..+....+..|+.....+++.+++....-+|.+.|.-+      ..+.        +....++...+|.+....
T Consensus        73 ~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~vyg~~~~~~~~--------e~~~~~p~~~Y~~sK~~~  144 (312)
T 3ko8_A           73 PEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVYGDADVIPTP--------EEEPYKPISVYGAAKAAG  144 (312)
T ss_dssp             CSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSSSSBC--------TTSCCCCCSHHHHHHHHH
T ss_pred             CCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHhCCCCCCCCC--------CCCCCCCCChHHHHHHHH
Confidence            4321  22345567889999999999998876554444433110      0000        011233334445555555


Q ss_pred             HHHHHHHHHHcCCCCccee-eeEEcccC
Q 022947          197 VRANTFVAEVLGLDPREVD-VPVVGGHA  223 (289)
Q Consensus       197 ~R~~~~lA~~l~v~~~~V~-~~V~G~hg  223 (289)
                      .++-..+++.+|++..-++ ..|+|...
T Consensus       145 e~~~~~~~~~~g~~~~~lrp~~v~g~~~  172 (312)
T 3ko8_A          145 EVMCATYARLFGVRCLAVRYANVVGPRL  172 (312)
T ss_dssp             HHHHHHHHHHHCCEEEEEEECEEECTTC
T ss_pred             HHHHHHHHHHhCCCEEEEeeccccCcCC
Confidence            5666677777888877777 56888754

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=98.68  E-value=4.7e-08  Score=88.31  Aligned_cols=101  Identities=18%  Similarity=0.254  Sum_probs=68.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHh-hhhc--------------cc---CCceEEEEecCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTA-DISH--------------MD---TNAVVRGFLGQQ  106 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~-DL~~--------------~~---~~~~v~~~~~t~  106 (289)
                      .+||+|||+ |.+|+.+|..++..|+  +|+++|+++. ..... .+.+              ..   ....+..   ++
T Consensus         4 ~~kV~VIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~---~~   77 (283)
T 4e12_A            4 ITNVTVLGT-GVLGSQIAFQTAFHGF--AVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY---SD   77 (283)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE---ES
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE---eC
Confidence            469999998 9999999999999998  9999999872 11111 1100              00   0012332   35


Q ss_pred             CHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcc
Q 022947          107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS  168 (289)
Q Consensus       107 d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~  168 (289)
                      ++.+++++||+||++..              .+.+..+++.+.+.+++ |++++  +||...+
T Consensus        78 ~~~~~~~~aDlVi~av~--------------~~~~~~~~v~~~l~~~~~~~~il--~s~tS~~  124 (283)
T 4e12_A           78 DLAQAVKDADLVIEAVP--------------ESLDLKRDIYTKLGELAPAKTIF--ATNSSTL  124 (283)
T ss_dssp             CHHHHTTTCSEEEECCC--------------SCHHHHHHHHHHHHHHSCTTCEE--EECCSSS
T ss_pred             CHHHHhccCCEEEEecc--------------CcHHHHHHHHHHHHhhCCCCcEE--EECCCCC
Confidence            77788999999999863              24566777788888877 56665  4454443

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=98.67  E-value=1.3e-07  Score=85.99  Aligned_cols=170  Identities=14%  Similarity=0.040  Sum_probs=100.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEec----CCCHHhhhCCCCEEEEc
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG----QQQLEDALTGMDIVIIP  121 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~----t~d~~eal~~aDiVIit  121 (289)
                      .|||.|+||+|++|++++..|+..|...+|+++|+....+....+........+..+.+    ..++.+++.++|+||++
T Consensus         3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~   82 (336)
T 2hun_A            3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKELVRKVDGVVHL   82 (336)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHTCSEEEEC
T ss_pred             CCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhhccCCceEEEEcCCCCHHHHHHHhhCCCEEEEC
Confidence            47999999999999999998888762228999998641111111111110122332211    12344567899999999


Q ss_pred             CCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC-------cccHHHHHHHHHHhCCCCCCcEEEee
Q 022947          122 AGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV-------NSTVPIAAEVFKKVGTYDPKRLLGVT  192 (289)
Q Consensus       122 ag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPv-------d~~t~~~~~~~~~~~~~~~~kviG~t  192 (289)
                      ||.....  ..+..+++..|+.....+++.+.+......++++|...       ..++        +....++...+|.+
T Consensus        83 A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~--------E~~~~~~~~~Y~~s  154 (336)
T 2hun_A           83 AAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDILKGSFT--------ENDRLMPSSPYSAT  154 (336)
T ss_dssp             CCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCCCSSSCBC--------TTBCCCCCSHHHHH
T ss_pred             CCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCCCCCCCcC--------CCCCCCCCCccHHH
Confidence            9864311  11234567889999999999999885444555555311       0000        00122333344444


Q ss_pred             eccHHHHHHHHHHHcCCCCccee-eeEEcccC
Q 022947          193 MLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (289)
Q Consensus       193 ~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg  223 (289)
                      .....++-..+++.++++..-++ ..|+|...
T Consensus       155 K~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~  186 (336)
T 2hun_A          155 KAASDMLVLGWTRTYNLNASITRCTNNYGPYQ  186 (336)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEEEECEEESTTC
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEeeeeeeCcCC
Confidence            44455555666677777766666 55777653

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=98.65  E-value=3.4e-08  Score=87.86  Aligned_cols=164  Identities=16%  Similarity=0.077  Sum_probs=95.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEE----ecCCCHHhhhCCCCEEEEc
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGF----LGQQQLEDALTGMDIVIIP  121 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~----~~t~d~~eal~~aDiVIit  121 (289)
                      +++|.|+||+|++|+.++..|+..|.  +|++.|+++....     .    ..+..+    ....++.+.+++.|+||++
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~~G~--~V~~~~r~~~~~~-----~----~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~   71 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAPMAE--ILRLADLSPLDPA-----G----PNEECVQCDLADANAVNAMVAGCDGIVHL   71 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGGGEE--EEEEEESSCCCCC-----C----TTEEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCC--EEEEEecCCcccc-----C----CCCEEEEcCCCCHHHHHHHHcCCCEEEEC
Confidence            45799999999999999999999887  8999998762111     0    011111    1112456778999999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHH
Q 022947          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANT  201 (289)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t~lds~R~~~  201 (289)
                      ||...  .....+.+..|+.....+++.+.+.....+|.+.|.-+ .-.+--...+.+....++...+|.+......+-+
T Consensus        72 Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~-~g~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~  148 (267)
T 3rft_A           72 GGISV--EKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASSNHT-IGYYPQTERLGPDVPARPDGLYGVSKCFGENLAR  148 (267)
T ss_dssp             CSCCS--CCCHHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGG-GTTSBTTSCBCTTSCCCCCSHHHHHHHHHHHHHH
T ss_pred             CCCcC--cCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcchHH-hCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Confidence            99742  22345678889999999999998876544444433211 0000000000000112233333444433444555


Q ss_pred             HHHHHcCCCCccee-eeEEcccC
Q 022947          202 FVAEVLGLDPREVD-VPVVGGHA  223 (289)
Q Consensus       202 ~lA~~l~v~~~~V~-~~V~G~hg  223 (289)
                      .+++++++....++ ..|.|+.+
T Consensus       149 ~~a~~~g~~~~~vr~~~v~~~~~  171 (267)
T 3rft_A          149 MYFDKFGQETALVRIGSCTPEPN  171 (267)
T ss_dssp             HHHHHHCCCEEEEEECBCSSSCC
T ss_pred             HHHHHhCCeEEEEEeecccCCCC
Confidence            66666776655555 33555443

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=98.61  E-value=1.3e-07  Score=91.98  Aligned_cols=127  Identities=17%  Similarity=0.198  Sum_probs=81.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhccc---------------CCceEEEEecCCCHH
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD---------------TNAVVRGFLGQQQLE  109 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~---------------~~~~v~~~~~t~d~~  109 (289)
                      ++|||+|||+ |+||..+|..|+..+...+|+++|+++...  ..+....               ....+..   ++++.
T Consensus         8 ~~mkI~VIG~-G~vG~~~A~~La~~g~g~~V~~~D~~~~~v--~~l~~g~~~i~e~gl~~~~~~~~~~~l~~---t~~~~   81 (481)
T 2o3j_A            8 KVSKVVCVGA-GYVGGPTCAMIAHKCPHITVTVVDMNTAKI--AEWNSDKLPIYEPGLDEIVFAARGRNLFF---SSDIP   81 (481)
T ss_dssp             CCCEEEEECC-STTHHHHHHHHHHHCTTSEEEEECSCHHHH--HHHTSSSCSSCCTTHHHHHHHHBTTTEEE---ESCHH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEECCHHHH--HHHHCCCCCcCCCCHHHHHHHhhcCCEEE---ECCHH
Confidence            4579999998 999999999998873222999999986211  1111100               0112332   45777


Q ss_pred             hhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CcEEEEe-cCCCcccHHHHHHHHHH
Q 022947          110 DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLI-SNPVNSTVPIAAEVFKK  179 (289)
Q Consensus       110 eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p-~aiviv~-tNPvd~~t~~~~~~~~~  179 (289)
                      +++++||+||++.+.|.+.+.++.+ -..++..+.++++.|.++.+ +.+|+.. |+|++..-.+ .+.+.+
T Consensus        82 ~~~~~aDvvii~Vptp~~~~g~~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~~l-~~~l~~  151 (481)
T 2o3j_A           82 KAIAEADLIFISVNTPTKMYGRGKG-MAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESI-GCILRE  151 (481)
T ss_dssp             HHHHHCSEEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHH-HHHHHH
T ss_pred             HHhhcCCEEEEecCCcccccccccc-CCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHHHH-HHHHHH
Confidence            8899999999999888654333222 12345567777888888764 5555442 7888765433 344444

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=98.60  E-value=2.4e-07  Score=89.31  Aligned_cols=108  Identities=19%  Similarity=0.221  Sum_probs=74.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhccc----------------CCceEEEEecCCCHHh
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----------------TNAVVRGFLGQQQLED  110 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~----------------~~~~v~~~~~t~d~~e  110 (289)
                      |||+|||+ |+||..+|..|+..|+  +|+++|+++...  ..+....                ....+..   ++|+++
T Consensus         3 mkI~VIG~-G~vG~~lA~~La~~G~--~V~~~D~~~~~v--~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~---t~d~~e   74 (450)
T 3gg2_A            3 LDIAVVGI-GYVGLVSATCFAELGA--NVRCIDTDRNKI--EQLNSGTIPIYEPGLEKMIARNVKAGRLRF---GTEIEQ   74 (450)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHH--HHHHHTCSCCCSTTHHHHHHHHHHTTSEEE---ESCHHH
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCC--EEEEEECCHHHH--HHHHcCCCcccCCCHHHHHHhhcccCcEEE---ECCHHH
Confidence            79999998 9999999999999998  999999986211  1111100                0123443   457888


Q ss_pred             hhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEec-CCCcc
Q 022947          111 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS-NPVNS  168 (289)
Q Consensus       111 al~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~t-NPvd~  168 (289)
                      ++++||+||++.+.|.+++.      ..++..+.++++.+.++. +..+|+..| -|.+.
T Consensus        75 a~~~aDvViiaVptp~~~~~------~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt  128 (450)
T 3gg2_A           75 AVPEADIIFIAVGTPAGEDG------SADMSYVLDAARSIGRAMSRYILIVTKSTVPVGS  128 (450)
T ss_dssp             HGGGCSEEEECCCCCBCTTS------SBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTH
T ss_pred             HHhcCCEEEEEcCCCcccCC------CcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcc
Confidence            89999999999987755432      235567777888888876 455554443 34443

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=98.59  E-value=4.5e-07  Score=87.22  Aligned_cols=125  Identities=21%  Similarity=0.214  Sum_probs=79.7

Q ss_pred             CCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch------hH-------Hhhhhcc-cCCceEEEEecCC
Q 022947           41 KGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP------GV-------TADISHM-DTNAVVRGFLGQQ  106 (289)
Q Consensus        41 ~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~------g~-------~~DL~~~-~~~~~v~~~~~t~  106 (289)
                      |.+.++.+|+|||. |+||..+|..++..|+  +|+.+|+++.+      |+       ..|+... ....+++.   ++
T Consensus        16 p~~~~m~~IaViGl-GYVGLp~A~~~A~~G~--~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~---tt   89 (444)
T 3vtf_A           16 PRGSHMASLSVLGL-GYVGVVHAVGFALLGH--RVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSF---AE   89 (444)
T ss_dssp             CTTCCCCEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---CS
T ss_pred             CCCCCCCEEEEEcc-CHHHHHHHHHHHhCCC--cEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeE---Ec
Confidence            34556779999998 9999999999999998  99999998621      11       0111111 11234553   56


Q ss_pred             CHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEE-ecCCCcccHHHH
Q 022947          107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL-ISNPVNSTVPIA  173 (289)
Q Consensus       107 d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv-~tNPvd~~t~~~  173 (289)
                      |+.+++++||++|+|.++|.+...+ .|+ ..-....+.+++.++..++..+|++ .|=|+.+.-.++
T Consensus        90 ~~~~ai~~ad~~~I~VpTP~~~d~~-~Dl-~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~  155 (444)
T 3vtf_A           90 SAEEAVAATDATFIAVGTPPAPDGS-ADL-RYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLV  155 (444)
T ss_dssp             SHHHHHHTSSEEEECCCCCBCTTSS-BCC-HHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHH
T ss_pred             CHHHHHhcCCceEEEecCCCCCCCC-CCc-HHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHH
Confidence            7888999999999999998765321 111 1122344556666655554444433 467777654333

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=98.58  E-value=2.1e-07  Score=84.02  Aligned_cols=165  Identities=16%  Similarity=0.126  Sum_probs=95.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-chhHHhhhhcccCCceEEE----EecCCCHHhhhCCCCEEEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRG----FLGQQQLEDALTGMDIVII  120 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~~g~~~DL~~~~~~~~v~~----~~~t~d~~eal~~aDiVIi  120 (289)
                      |+||.|+||+|++|++++..|+..|   +++.++... .....  + .    ..+..    ... .++.++++++|+||+
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g---~~v~~~~~~~~~~~~--~-~----~~~~~~~~Dl~~-~~~~~~~~~~d~vih   69 (313)
T 3ehe_A            1 MSLIVVTGGAGFIGSHVVDKLSESN---EIVVIDNLSSGNEEF--V-N----EAARLVKADLAA-DDIKDYLKGAEEVWH   69 (313)
T ss_dssp             --CEEEETTTSHHHHHHHHHHTTTS---CEEEECCCSSCCGGG--S-C----TTEEEECCCTTT-SCCHHHHTTCSEEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCC---CEEEEEcCCCCChhh--c-C----CCcEEEECcCCh-HHHHHHhcCCCEEEE
Confidence            4689999999999999999999888   344444433 11110  0 0    01111    112 346678899999999


Q ss_pred             cCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeeccHHH
Q 022947          121 PAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVR  198 (289)
Q Consensus       121 tag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t~lds~R  198 (289)
                      +|+.+...  .....+.+..|+.....+++.+.+..... ++++|.-. +...--...+.+....++...+|.+.....+
T Consensus        70 ~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~-iv~~SS~~-vyg~~~~~~~~E~~~~~~~~~Y~~sK~~~e~  147 (313)
T 3ehe_A           70 IAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSR-IVFTSTST-VYGEAKVIPTPEDYPTHPISLYGASKLACEA  147 (313)
T ss_dssp             CCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCCE-EEEECCGG-GGCSCSSSSBCTTSCCCCCSHHHHHHHHHHH
T ss_pred             CCCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCe-EEEeCchH-HhCcCCCCCCCCCCCCCCCCHHHHHHHHHHH
Confidence            99865321  23345678889999999999998876544 44444311 1000000000000112233334445444555


Q ss_pred             HHHHHHHHcCCCCccee-eeEEcccC
Q 022947          199 ANTFVAEVLGLDPREVD-VPVVGGHA  223 (289)
Q Consensus       199 ~~~~lA~~l~v~~~~V~-~~V~G~hg  223 (289)
                      +-..+++.+|++..-++ ..|+|...
T Consensus       148 ~~~~~~~~~g~~~~ilRp~~v~G~~~  173 (313)
T 3ehe_A          148 LIESYCHTFDMQAWIYRFANVIGRRS  173 (313)
T ss_dssp             HHHHHHHHTTCEEEEEECSCEESTTC
T ss_pred             HHHHHHHhcCCCEEEEeeccccCcCC
Confidence            66667777788777776 55888653

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=98.58  E-value=1.2e-07  Score=86.57  Aligned_cols=162  Identities=15%  Similarity=0.061  Sum_probs=99.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhC--CCccEEEEEeCCCc---hhHHhhhhcccCCceEEEEec----CCCHHhhhCCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFLG----QQQLEDALTGMD  116 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~--g~~~eI~LvD~~~~---~g~~~DL~~~~~~~~v~~~~~----t~d~~eal~~aD  116 (289)
                      +|||.|+||+|++|++++..|+..  |+  +|+++|++..   .....++..    ..+..+.+    ..++.++++++|
T Consensus         4 m~~vlVTGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~Dl~d~~~~~~~~~~~d   77 (348)
T 1oc2_A            4 FKNIIVTGGAGFIGSNFVHYVYNNHPDV--HVTVLDKLTYAGNKANLEAILG----DRVELVVGDIADAELVDKLAAKAD   77 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTC--EEEEEECCCTTCCGGGTGGGCS----SSEEEEECCTTCHHHHHHHHTTCS
T ss_pred             CcEEEEeCCccHHHHHHHHHHHHhCCCC--EEEEEeCCCCCCChhHHhhhcc----CCeEEEECCCCCHHHHHHHhhcCC
Confidence            579999999999999999988887  66  9999998652   111112211    22322211    123556789999


Q ss_pred             EEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC-------------------cccHHHHHH
Q 022947          117 IVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV-------------------NSTVPIAAE  175 (289)
Q Consensus       117 iVIitag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPv-------------------d~~t~~~~~  175 (289)
                      +||++||.....  ..+..+.+..|+.....+++.+.+...  .++++|...                   ..++     
T Consensus        78 ~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~--~~v~~SS~~vyg~~~~~~~~~~~~~~~~~~~~-----  150 (348)
T 1oc2_A           78 AIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI--RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFT-----  150 (348)
T ss_dssp             EEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC--EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBC-----
T ss_pred             EEEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCC--eEEEecccceeCCCcccccccccccccCCCcC-----
Confidence            999999865311  012345678899999999999988754  555544210                   0010     


Q ss_pred             HHHHhCCCCCCcEEEeeeccHHHHHHHHHHHcCCCCccee-eeEEcccC
Q 022947          176 VFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (289)
Q Consensus       176 ~~~~~~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg  223 (289)
                         +....++...+|.+.....++-..+++.+|++..-++ ..|+|...
T Consensus       151 ---E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilrp~~v~G~~~  196 (348)
T 1oc2_A          151 ---AETNYNPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQ  196 (348)
T ss_dssp             ---TTSCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTC
T ss_pred             ---CCCCCCCCCccHHHHHHHHHHHHHHHHHhCCCEEEEeeceeeCCCC
Confidence               0112233334444444455555666667787777776 55778654

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=98.58  E-value=4.1e-07  Score=84.74  Aligned_cols=171  Identities=15%  Similarity=0.073  Sum_probs=99.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEE--EecCCCHHhhhCCCCEEEEcC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG--FLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~--~~~t~d~~eal~~aDiVIita  122 (289)
                      ++|||.|+||+|++|++++..|+..|+  +|+++|++......  +...  ...+..  +....++.++++++|+||++|
T Consensus        28 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~--~~~~--~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A  101 (379)
T 2c5a_A           28 ENLKISITGAGGFIASHIARRLKHEGH--YVIASDWKKNEHMT--EDMF--CDEFHLVDLRVMENCLKVTEGVDHVFNLA  101 (379)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCSSSC--GGGT--CSEEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred             cCCeEEEECCccHHHHHHHHHHHHCCC--eEEEEECCCccchh--hccC--CceEEECCCCCHHHHHHHhCCCCEEEECc
Confidence            467999999999999999999999997  99999987621110  1110  011111  111123567789999999999


Q ss_pred             CCCCCC---CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHH-----HHHHHhC--CCCCCcEEEee
Q 022947          123 GVPRKP---GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAA-----EVFKKVG--TYDPKRLLGVT  192 (289)
Q Consensus       123 g~~~~~---g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~-----~~~~~~~--~~~~~kviG~t  192 (289)
                      |.....   .....+++..|+.....+++.+.+....-+|. +|... +....-.     ..+.+..  ..++...+|.+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~~V~-~SS~~-v~~~~~~~~~~~~~~~E~~~~~~~~~~~Y~~s  179 (379)
T 2c5a_A          102 ADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFY-ASSAC-IYPEFKQLETTNVSLKESDAWPAEPQDAFGLE  179 (379)
T ss_dssp             CCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEE-EEEGG-GSCGGGSSSSSSCEECGGGGSSBCCSSHHHHH
T ss_pred             eecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEE-Eeehh-eeCCCCCCCccCCCcCcccCCCCCCCChhHHH
Confidence            865321   23345677889999999999998765444444 43211 1000000     0000000  11222333444


Q ss_pred             eccHHHHHHHHHHHcCCCCccee-eeEEcccC
Q 022947          193 MLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (289)
Q Consensus       193 ~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg  223 (289)
                      .....++...+++..|++..-++ ..++|...
T Consensus       180 K~~~E~~~~~~~~~~gi~~~ilrp~~v~G~~~  211 (379)
T 2c5a_A          180 KLATEELCKHYNKDFGIECRIGRFHNIYGPFG  211 (379)
T ss_dssp             HHHHHHHHHHHHHHHCCEEEEEEECCEECTTS
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEeCceeCcCC
Confidence            44444555556666788777777 56888653

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=98.57  E-value=1.3e-07  Score=87.51  Aligned_cols=111  Identities=15%  Similarity=0.158  Sum_probs=74.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhC-CCccEEEEEeCCCchhHHhhhhcccCCceEEEEec-----CCCHHhhhCCCCEE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-----QQQLEDALTGMDIV  118 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~-g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~-----t~d~~eal~~aDiV  118 (289)
                      ++|||.|+||+|++|++++..|+.. |+  +|+++|++....  .++..   ...+..+.+     ...+.++++++|+|
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~--~~~~~---~~~v~~~~~Dl~~d~~~~~~~~~~~d~V   95 (372)
T 3slg_A           23 KAKKVLILGVNGFIGHHLSKRILETTDW--EVFGMDMQTDRL--GDLVK---HERMHFFEGDITINKEWVEYHVKKCDVI   95 (372)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHHSSC--EEEEEESCCTTT--GGGGG---STTEEEEECCTTTCHHHHHHHHHHCSEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCC--EEEEEeCChhhh--hhhcc---CCCeEEEeCccCCCHHHHHHHhccCCEE
Confidence            3579999999999999999988887 77  999999876211  11111   112222211     12345677899999


Q ss_pred             EEcCCCCCCCC--CchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 022947          119 IIPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       119 Iitag~~~~~g--~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      |++|+......  .+..+.+..|+.....+++.+++.+  ..++++|.
T Consensus        96 ih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~--~~~v~~SS  141 (372)
T 3slg_A           96 LPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPST  141 (372)
T ss_dssp             EECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT--CEEEEECC
T ss_pred             EEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC--CcEEEeCc
Confidence            99998653211  1234566788888899999998887  45555543

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=98.57  E-value=3.4e-07  Score=83.13  Aligned_cols=173  Identities=17%  Similarity=0.001  Sum_probs=95.0

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch---hHHhhhhcccCCceEEEEec----CCCHHhhhCC--
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMDTNAVVRGFLG----QQQLEDALTG--  114 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~---g~~~DL~~~~~~~~v~~~~~----t~d~~eal~~--  114 (289)
                      .+++||.|+||+|++|++++..|+..|.  +|+++|++...   ....++..   ...+..+.+    ..++.+++++  
T Consensus        12 ~~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~   86 (335)
T 1rpn_A           12 SMTRSALVTGITGQDGAYLAKLLLEKGY--RVHGLVARRSSDTRWRLRELGI---EGDIQYEDGDMADACSVQRAVIKAQ   86 (335)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCHHHHHTTC---GGGEEEEECCTTCHHHHHHHHHHHC
T ss_pred             ccCCeEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCCccccccchhhccc---cCceEEEECCCCCHHHHHHHHHHcC
Confidence            4567999999999999999999999987  99999987621   11122211   112222211    1234455665  


Q ss_pred             CCEEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEee
Q 022947          115 MDIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT  192 (289)
Q Consensus       115 aDiVIitag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t  192 (289)
                      .|+||++||.....  ..+..+.+..|+.....+++.+.+......++++|... +....-...+.+.....+...+|.+
T Consensus        87 ~d~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~-v~g~~~~~~~~E~~~~~p~~~Y~~s  165 (335)
T 1rpn_A           87 PQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSE-MFGLIQAERQDENTPFYPRSPYGVA  165 (335)
T ss_dssp             CSEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGG-GGCSCSSSSBCTTSCCCCCSHHHHH
T ss_pred             CCEEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCHH-HhCCCCCCCCCcccCCCCCChhHHH
Confidence            59999999864321  12345677889999999999998876434555554321 0000000000000111222233444


Q ss_pred             eccHHHHHHHHHHHcCCCCccee-eeEEccc
Q 022947          193 MLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (289)
Q Consensus       193 ~lds~R~~~~lA~~l~v~~~~V~-~~V~G~h  222 (289)
                      .....++...+++.++++..-++ ..++|..
T Consensus       166 K~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~  196 (335)
T 1rpn_A          166 KLYGHWITVNYRESFGLHASSGILFNHESPL  196 (335)
T ss_dssp             HHHHHHHHHHHHHHHCCCEEEEEECCEECTT
T ss_pred             HHHHHHHHHHHHHHcCCcEEEEeeCcccCCC
Confidence            44444455555666676665555 3366643

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=98.57  E-value=3.6e-07  Score=83.18  Aligned_cols=168  Identities=16%  Similarity=0.064  Sum_probs=99.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe----cCCCHHhhhC--CCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL----GQQQLEDALT--GMD  116 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~----~t~d~~eal~--~aD  116 (289)
                      ++|+|.|+||+|++|++++..|+..|.  +|+++|++..  .....++.... ...+..+.    ...++.++++  +.|
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d   80 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGY--DVVIADNLVNSKREAIARIEKIT-GKTPAFHETDVSDERALARIFDAHPIT   80 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCCSSSCTHHHHHHHHHH-SCCCEEECCCTTCHHHHHHHHHHSCCC
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCC--cEEEEecCCcchHHHHHHHHhhc-CCCceEEEeecCCHHHHHHHHhccCCc
Confidence            356999999999999999999999998  9999998762  21222222110 11122111    1123445566  899


Q ss_pred             EEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC-----CCc-ccHHHHHHHHHHhCCCCCCcE
Q 022947          117 IVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN-----PVN-STVPIAAEVFKKVGTYDPKRL  188 (289)
Q Consensus       117 iVIitag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN-----Pvd-~~t~~~~~~~~~~~~~~~~kv  188 (289)
                      +||++||.....  .....+.+..|+.....+++.+++.....+|.+.|-     |.+ .++        +....++...
T Consensus        81 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~--------e~~~~~~~~~  152 (341)
T 3enk_A           81 AAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSSATVYGVPERSPID--------ETFPLSATNP  152 (341)
T ss_dssp             EEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGBCSCSSSSBC--------TTSCCBCSSH
T ss_pred             EEEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEecceEecCCCCCCCC--------CCCCCCCCCh
Confidence            999999864211  112345678899999999999988765544444331     100 010        0011223334


Q ss_pred             EEeeeccHHHHHHHHHHHcC-CCCccee-eeEEcccC
Q 022947          189 LGVTMLDVVRANTFVAEVLG-LDPREVD-VPVVGGHA  223 (289)
Q Consensus       189 iG~t~lds~R~~~~lA~~l~-v~~~~V~-~~V~G~hg  223 (289)
                      +|.+.....++-..+++.++ ++..-++ ..|+|.+.
T Consensus       153 Y~~sK~~~e~~~~~~~~~~~~~~~~~lRp~~v~G~~~  189 (341)
T 3enk_A          153 YGQTKLMAEQILRDVEAADPSWRVATLRYFNPVGAHE  189 (341)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCT
T ss_pred             hHHHHHHHHHHHHHHhhcCCCceEEEEeeccccCCcc
Confidence            45555445556666677765 6656666 45888753

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=98.57  E-value=3.3e-07  Score=79.51  Aligned_cols=110  Identities=18%  Similarity=0.141  Sum_probs=76.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCc-eEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNA-VVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~-~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      .|||.|+||+|++|+.++..|+..|.  +|+++++++....  ++....  . .+.....+.++.+++.++|+||++||.
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~~G~--~V~~~~R~~~~~~--~~~~~~--~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~   94 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKNKGH--EPVAMVRNEEQGP--ELRERG--ASDIVVANLEEDFSHAFASIDAVVFAAGS   94 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSGGGHH--HHHHTT--CSEEEECCTTSCCGGGGTTCSEEEECCCC
T ss_pred             CCeEEEECCCChHHHHHHHHHHhCCC--eEEEEECChHHHH--HHHhCC--CceEEEcccHHHHHHHHcCCCEEEECCCC
Confidence            56999999999999999999999998  9999998763211  111111  1 111000113456889999999999986


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      ...  .+..+.+..|+.....+++.+++..... ++++|.
T Consensus        95 ~~~--~~~~~~~~~n~~~~~~l~~a~~~~~~~~-iv~~SS  131 (236)
T 3e8x_A           95 GPH--TGADKTILIDLWGAIKTIQEAEKRGIKR-FIMVSS  131 (236)
T ss_dssp             CTT--SCHHHHHHTTTHHHHHHHHHHHHHTCCE-EEEECC
T ss_pred             CCC--CCccccchhhHHHHHHHHHHHHHcCCCE-EEEEec
Confidence            532  3345667889999999999998876444 444443

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=98.57  E-value=1.4e-07  Score=81.07  Aligned_cols=103  Identities=14%  Similarity=0.099  Sum_probs=71.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEe----cCCCHHhhhCCCCEEEEc
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL----GQQQLEDALTGMDIVIIP  121 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~----~t~d~~eal~~aDiVIit  121 (289)
                      +|||.|+||+|++|+.++..|+..|.  +|+++++++....  ++.     ..+..+.    ...++.++++++|+||++
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~-----~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   74 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGF--EVTAVVRHPEKIK--IEN-----EHLKVKKADVSSLDEVCEVCKGADAVISA   74 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTC--EEEEECSCGGGCC--CCC-----TTEEEECCCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCC--EEEEEEcCcccch--hcc-----CceEEEEecCCCHHHHHHHhcCCCEEEEe
Confidence            57999999999999999999999997  9999998752111  010     1222211    122456788999999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEE
Q 022947          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL  161 (289)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv  161 (289)
                      +|....    ..+++..|+...+.+++.+++....-+|.+
T Consensus        75 a~~~~~----~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~  110 (227)
T 3dhn_A           75 FNPGWN----NPDIYDETIKVYLTIIDGVKKAGVNRFLMV  110 (227)
T ss_dssp             CCC----------CCSHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CcCCCC----ChhHHHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence            976422    223566799999999999998765544443

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=98.56  E-value=6.1e-07  Score=81.62  Aligned_cols=162  Identities=17%  Similarity=0.109  Sum_probs=95.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhC---C---CccEEEEEeCCCc---hhHHhhhhcccCCceEEEEec----CCCHHhhhC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKIN---P---LVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFLG----QQQLEDALT  113 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~---g---~~~eI~LvD~~~~---~g~~~DL~~~~~~~~v~~~~~----t~d~~eal~  113 (289)
                      |||.|+||+|++|++++..|+..   |   +  +|+++|+...   .....++..   ...+..+.+    ..++.+++.
T Consensus         1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~   75 (337)
T 1r6d_A            1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPAD--EVIVLDSLTYAGNRANLAPVDA---DPRLRFVHGDIRDAGLLARELR   75 (337)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCS--EEEEEECCCTTCCGGGGGGGTT---CTTEEEEECCTTCHHHHHHHTT
T ss_pred             CeEEEECCccHHHHHHHHHHHhhhcCCCCce--EEEEEECCCccCchhhhhhccc---CCCeEEEEcCCCCHHHHHHHhc
Confidence            58999999999999999999885   5   5  9999998641   111112211   122322211    123456678


Q ss_pred             CCCEEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC-------cccHHHHHHHHHHhCCCC
Q 022947          114 GMDIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV-------NSTVPIAAEVFKKVGTYD  184 (289)
Q Consensus       114 ~aDiVIitag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPv-------d~~t~~~~~~~~~~~~~~  184 (289)
                      ++|+||++||.....  ..+..+++..|+.....+++.+.+.... .++++|...       ..++        +....+
T Consensus        76 ~~d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~-~~v~~SS~~vyg~~~~~~~~--------E~~~~~  146 (337)
T 1r6d_A           76 GVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG-RVVHVSTNQVYGSIDSGSWT--------ESSPLE  146 (337)
T ss_dssp             TCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEEEGGGGCCCSSSCBC--------TTSCCC
T ss_pred             CCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEecchHHhCCCCCCCCC--------CCCCCC
Confidence            999999999864211  0123456788999999999999887544 444443210       0000        001122


Q ss_pred             CCcEEEeeeccHHHHHHHHHHHcCCCCccee-eeEEccc
Q 022947          185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (289)
Q Consensus       185 ~~kviG~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~h  222 (289)
                      +...+|.+.....++-..+++..+++..-++ ..|+|..
T Consensus       147 ~~~~Y~~sK~~~e~~~~~~~~~~g~~~~ilrp~~v~G~~  185 (337)
T 1r6d_A          147 PNSPYAASKAGSDLVARAYHRTYGLDVRITRCCNNYGPY  185 (337)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTT
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeECCC
Confidence            3333444444444555556666787777676 5577765

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=98.56  E-value=3.7e-07  Score=87.47  Aligned_cols=119  Identities=17%  Similarity=0.246  Sum_probs=76.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhccc--C--------------CceEEEEecCCCHHh
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--T--------------NAVVRGFLGQQQLED  110 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~--~--------------~~~v~~~~~t~d~~e  110 (289)
                      |||+|||+ |+||..++..|+..|+  +|+++|+++...  ..+....  .              ..++..   ++++++
T Consensus         1 mkI~VIG~-G~vG~~~A~~la~~G~--~V~~~d~~~~~~--~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~---t~~~~~   72 (436)
T 1mv8_A            1 MRISIFGL-GYVGAVCAGCLSARGH--EVIGVDVSSTKI--DLINQGKSPIVEPGLEALLQQGRQTGRLSG---TTDFKK   72 (436)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHHH--HHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---ESCHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHhCCCCCcCCCCHHHHHHhhcccCceEE---eCCHHH
Confidence            69999998 9999999999999998  999999976211  1111100  0              113443   457777


Q ss_pred             hhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-C---CcEEEEe-cCCCcccHHHHHHHHHH
Q 022947          111 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-P---KAIVNLI-SNPVNSTVPIAAEVFKK  179 (289)
Q Consensus       111 al~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p---~aiviv~-tNPvd~~t~~~~~~~~~  179 (289)
                      ++++||+||++.+.|..... .     .++..++++++.+.++. |   +.+|+.. |+|.+.....+.+.+.+
T Consensus        73 ~~~~aDvviiaVptp~~~~~-~-----~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~  140 (436)
T 1mv8_A           73 AVLDSDVSFICVGTPSKKNG-D-----LDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIED  140 (436)
T ss_dssp             HHHTCSEEEECCCCCBCTTS-S-----BCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHH
T ss_pred             HhccCCEEEEEcCCCcccCC-C-----cchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHH
Confidence            89999999999887654322 1     23445556666666543 5   6666654 78877633333344443

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=98.56  E-value=5.6e-07  Score=82.72  Aligned_cols=169  Identities=10%  Similarity=0.048  Sum_probs=94.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCC-CccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhC-----CCCEEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT-----GMDIVI  119 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g-~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~-----~aDiVI  119 (289)
                      .|||.|+||+|++|++++..|+..| .  +|+++|++.......++........+   .....++++++     ++|+||
T Consensus        46 ~~~vlVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~~~~~~~~~d~Vi  120 (357)
T 2x6t_A           46 GRMIIVTGGAGFIGSNIVKALNDKGIT--DILVVDNLKDGTKFVNLVDLNIADYM---DKEDFLIQIMAGEEFGDVEAIF  120 (357)
T ss_dssp             --CEEEETTTSHHHHHHHHHHHHTTCC--CEEEEECCSSGGGGGGTTTSCCSEEE---EHHHHHHHHHTTCCCSSCCEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCc--EEEEEecCCCcchhhcccCceEeeec---CcHHHHHHHHhhcccCCCCEEE
Confidence            4689999999999999999999988 6  89999987532111112111111111   11223445565     599999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeeccHHHH
Q 022947          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRA  199 (289)
Q Consensus       120 itag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t~lds~R~  199 (289)
                      ++||.......+..+.+..|+.....+++.+.+... - ++++|... +.-..-...+.+.....+...+|.+.....++
T Consensus       121 h~A~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~-r-~V~~SS~~-v~g~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~  197 (357)
T 2x6t_A          121 HEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI-P-FLYASSAA-TYGGRTSDFIESREYEKPLNVFGYSKFLFDEY  197 (357)
T ss_dssp             ECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC-C-EEEEEEGG-GGCSCSSCCCSSGGGCCCSSHHHHHHHHHHHH
T ss_pred             ECCcccCCccCCHHHHHHHHHHHHHHHHHHHHHcCC-e-EEEEcchH-HhCCCCCCCcCCcCCCCCCChhHHHHHHHHHH
Confidence            999865433334566788899999999999988765 4 44443211 00000000000000011222333343334444


Q ss_pred             HHHHHHHcCCCCccee-eeEEccc
Q 022947          200 NTFVAEVLGLDPREVD-VPVVGGH  222 (289)
Q Consensus       200 ~~~lA~~l~v~~~~V~-~~V~G~h  222 (289)
                      -..+++..|++..-++ ..|+|..
T Consensus       198 ~~~~~~~~g~~~~ilRp~~v~Gp~  221 (357)
T 2x6t_A          198 VRQILPEANSQIVGFRYFNVYGPR  221 (357)
T ss_dssp             HHHHGGGCSSCEEEEEECEEESSS
T ss_pred             HHHHHHHcCCCEEEEecCeEECCC
Confidence            4445555566666666 5577764

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=98.55  E-value=2.7e-07  Score=83.97  Aligned_cols=171  Identities=16%  Similarity=0.114  Sum_probs=100.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--c-hhHHhhhhcccCCceEEEEec----CCCHHhhhCC--CC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGVTADISHMDTNAVVRGFLG----QQQLEDALTG--MD  116 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~-~g~~~DL~~~~~~~~v~~~~~----t~d~~eal~~--aD  116 (289)
                      ||||.|+||+|++|++++..|+..|.  +|+++|++.  . .....++...   .++..+.+    ..++.+++++  +|
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~l~~~---~~~~~~~~Dl~d~~~~~~~~~~~~~d   75 (347)
T 1orr_A            1 MAKLLITGGCGFLGSNLASFALSQGI--DLIVFDNLSRKGATDNLHWLSSL---GNFEFVHGDIRNKNDVTRLITKYMPD   75 (347)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSTTHHHHHHHHHTT---CCCEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CcEEEEeCCCchhHHHHHHHHHhCCC--EEEEEeCCCccCchhhhhhhccC---CceEEEEcCCCCHHHHHHHHhccCCC
Confidence            46899999999999999999999987  999999753  1 1112223221   11222111    1234566777  99


Q ss_pred             EEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHH----------------HHHH
Q 022947          117 IVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAA----------------EVFK  178 (289)
Q Consensus       117 iVIitag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~----------------~~~~  178 (289)
                      +||++||.....  ..+..+.+..|+.....+++.+.+....+.++++|... +......                ..+.
T Consensus        76 ~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS~~-v~g~~~~~~~~e~~~~~~~~~~~~~~~  154 (347)
T 1orr_A           76 SCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNK-VYGDLEQYKYNETETRYTCVDKPNGYD  154 (347)
T ss_dssp             EEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGG-GGTTCTTSCEEECSSCEEETTCTTCBC
T ss_pred             EEEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeccHH-HhCCCCcCCcccccccccccccccCcc
Confidence            999999864211  01234567889999999999999887655555555321 1000000                0000


Q ss_pred             HhCCCCCCcEEEeeeccHHHHHHHHHHHcCCCCccee-eeEEccc
Q 022947          179 KVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (289)
Q Consensus       179 ~~~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~h  222 (289)
                      +....++...+|.+.....++-..+++.+|++..-++ ..|+|..
T Consensus       155 e~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~  199 (347)
T 1orr_A          155 ESTQLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGR  199 (347)
T ss_dssp             TTSCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTT
T ss_pred             ccCCCCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEccCceeCcC
Confidence            0001222233344444445555666677788777776 5688864

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=98.54  E-value=7.9e-07  Score=85.97  Aligned_cols=119  Identities=18%  Similarity=0.259  Sum_probs=76.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhh-h-------------hcccC-CceEEEEecCCCH
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTAD-I-------------SHMDT-NAVVRGFLGQQQL  108 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~D-L-------------~~~~~-~~~v~~~~~t~d~  108 (289)
                      ..+||+|||+ |.+|+.+|..|+..|+  +|+++|+++. .....+ +             ..... ....+.   ++++
T Consensus        36 ~~~kV~VIGa-G~MG~~iA~~la~~G~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i---~~~~  109 (463)
T 1zcj_A           36 PVSSVGVLGL-GTMGRGIAISFARVGI--SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF---SSST  109 (463)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE---ESCG
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh---cCCH
Confidence            3579999998 9999999999999998  9999999861 111110 0             00000 111222   3466


Q ss_pred             HhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCc
Q 022947          109 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR  187 (289)
Q Consensus       109 ~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~k  187 (289)
                       +++++||+||++..              .+..+.+++.+.+.+++ |+++|  +||.+.+-+..    +..... .+++
T Consensus       110 -~~~~~aDlVIeaVp--------------e~~~~k~~v~~~l~~~~~~~~ii--~snTs~~~~~~----la~~~~-~~~~  167 (463)
T 1zcj_A          110 -KELSTVDLVVEAVF--------------EDMNLKKKVFAELSALCKPGAFL--CTNTSALNVDD----IASSTD-RPQL  167 (463)
T ss_dssp             -GGGTTCSEEEECCC--------------SCHHHHHHHHHHHHHHSCTTCEE--EECCSSSCHHH----HHTTSS-CGGG
T ss_pred             -HHHCCCCEEEEcCC--------------CCHHHHHHHHHHHHhhCCCCeEE--EeCCCCcCHHH----HHHHhc-CCcc
Confidence             78999999999962              24566777888888887 56655  45777654321    222222 2467


Q ss_pred             EEEe
Q 022947          188 LLGV  191 (289)
Q Consensus       188 viG~  191 (289)
                      ++|+
T Consensus       168 ~ig~  171 (463)
T 1zcj_A          168 VIGT  171 (463)
T ss_dssp             EEEE
T ss_pred             eEEe
Confidence            7776

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=98.54  E-value=3.4e-07  Score=87.82  Aligned_cols=114  Identities=21%  Similarity=0.270  Sum_probs=71.4

Q ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcc------------c--CCceEEEEecCCCH
Q 022947           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM------------D--TNAVVRGFLGQQQL  108 (289)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~------------~--~~~~v~~~~~t~d~  108 (289)
                      ..++|||+|||+ |+||..+|..|++ |+  +|+++|+++..-  ..+...            .  ....++.   ++|+
T Consensus        33 ~~~~mkIaVIGl-G~mG~~lA~~La~-G~--~V~~~D~~~~~v--~~l~~g~~~i~e~~l~~ll~~~~~~l~~---ttd~  103 (432)
T 3pid_A           33 GSEFMKITISGT-GYVGLSNGVLIAQ-NH--EVVALDIVQAKV--DMLNQKISPIVDKEIQEYLAEKPLNFRA---TTDK  103 (432)
T ss_dssp             --CCCEEEEECC-SHHHHHHHHHHHT-TS--EEEEECSCHHHH--HHHHTTCCSSCCHHHHHHHHHSCCCEEE---ESCH
T ss_pred             ccCCCEEEEECc-CHHHHHHHHHHHc-CC--eEEEEecCHHHh--hHHhccCCccccccHHHHHhhccCCeEE---EcCH
Confidence            345789999998 9999999998887 87  999999986211  111110            0  0113443   4678


Q ss_pred             HhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEe-cCCCcccH
Q 022947          109 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI-SNPVNSTV  170 (289)
Q Consensus       109 ~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~-tNPvd~~t  170 (289)
                      ++++++||+||++...+..+....     .++..+.+.++.+.+..|..+|+.- |.|....-
T Consensus       104 ~ea~~~aDvViiaVPt~~~~~~~~-----~Dl~~V~~v~~~i~~l~~g~iVV~~STv~pgtt~  161 (432)
T 3pid_A          104 HDAYRNADYVIIATPTDYDPKTNY-----FNTSTVEAVIRDVTEINPNAVMIIKSTIPVGFTR  161 (432)
T ss_dssp             HHHHTTCSEEEECCCCEEETTTTE-----EECHHHHHHHHHHHHHCTTSEEEECSCCCTTHHH
T ss_pred             HHHHhCCCEEEEeCCCcccccccc-----ccHHHHHHHHHHHHhcCCCcEEEEeCCCChHHHH
Confidence            899999999999965442221111     1344555566666665577766554 56665543

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=98.54  E-value=2.4e-07  Score=89.52  Aligned_cols=118  Identities=19%  Similarity=0.280  Sum_probs=78.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhH--H---h-hhhccc---------CCceEEEEecCCCHHh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--T---A-DISHMD---------TNAVVRGFLGQQQLED  110 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~--~---~-DL~~~~---------~~~~v~~~~~t~d~~e  110 (289)
                      .+||+|||+ |.+|+.+|..++..|+  +|+++|+++.++.  .   + .+....         ...++..   ++|+ +
T Consensus        54 i~kVaVIGa-G~MG~~IA~~la~aG~--~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~---t~dl-~  126 (460)
T 3k6j_A           54 VNSVAIIGG-GTMGKAMAICFGLAGI--ETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKI---TSDF-H  126 (460)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEE---ESCG-G
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEE---eCCH-H
Confidence            479999998 9999999999999998  9999999863211  0   1 111110         0123443   3567 5


Q ss_pred             hhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEE
Q 022947          111 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLL  189 (289)
Q Consensus       111 al~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kvi  189 (289)
                      ++++||+||.+..              ++..+.+++.+++.+++ |++++  +||.+.+-.   ++ +..... .|++++
T Consensus       127 al~~aDlVIeAVp--------------e~~~vk~~v~~~l~~~~~~~aIl--asnTSsl~i---~~-ia~~~~-~p~r~i  185 (460)
T 3k6j_A          127 KLSNCDLIVESVI--------------EDMKLKKELFANLENICKSTCIF--GTNTSSLDL---NE-ISSVLR-DPSNLV  185 (460)
T ss_dssp             GCTTCSEEEECCC--------------SCHHHHHHHHHHHHTTSCTTCEE--EECCSSSCH---HH-HHTTSS-SGGGEE
T ss_pred             HHccCCEEEEcCC--------------CCHHHHHHHHHHHHhhCCCCCEE--EecCCChhH---HH-HHHhcc-CCcceE
Confidence            8999999999852              35677788888899887 56766  466655322   12 222222 356777


Q ss_pred             Ee
Q 022947          190 GV  191 (289)
Q Consensus       190 G~  191 (289)
                      |+
T Consensus       186 G~  187 (460)
T 3k6j_A          186 GI  187 (460)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=98.53  E-value=4.6e-07  Score=83.14  Aligned_cols=164  Identities=15%  Similarity=0.036  Sum_probs=98.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhC-CCccEEEEEeCCCc---hhHHhhhhcccCCceEEEEec-C---CCHHhhhC--CCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFLG-Q---QQLEDALT--GMD  116 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~-g~~~eI~LvD~~~~---~g~~~DL~~~~~~~~v~~~~~-t---~d~~eal~--~aD  116 (289)
                      |||.|+||+|++|++++..|+.. ++  +|+++|++..   .....++..   ...+..+.+ -   .++.++++  ++|
T Consensus         1 MkvlVTGasG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~d   75 (361)
T 1kew_A            1 MKILITGGAGFIGSAVVRHIIKNTQD--TVVNIDKLTYAGNLESLSDISE---SNRYNFEHADICDSAEITRIFEQYQPD   75 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSC--EEEEEECCCTTCCGGGGTTTTT---CTTEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CEEEEECCCchHhHHHHHHHHhcCCC--eEEEEecCCCCCchhhhhhhhc---CCCeEEEECCCCCHHHHHHHHhhcCCC
Confidence            58999999999999999988886 66  8999998641   111112211   122332211 1   23445566  899


Q ss_pred             EEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHh--CCC------cEEEEecCCC--c---------------cc
Q 022947          117 IVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKC--CPK------AIVNLISNPV--N---------------ST  169 (289)
Q Consensus       117 iVIitag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~--~p~------aiviv~tNPv--d---------------~~  169 (289)
                      +||++||.....  ..+..+++..|+.....+++.+.+.  ..+      +.|+++|...  +               .+
T Consensus        76 ~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~~~~~  155 (361)
T 1kew_A           76 AVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLF  155 (361)
T ss_dssp             EEEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCB
T ss_pred             EEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccccccccccCCCC
Confidence            999999865310  0123456788999999999998887  433      3555554311  0               00


Q ss_pred             HHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHcCCCCccee-eeEEcccC
Q 022947          170 VPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (289)
Q Consensus       170 t~~~~~~~~~~~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg  223 (289)
                      +        +....++...+|.+.....++-..+++.+|++..-++ +.|+|...
T Consensus       156 ~--------E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~  202 (361)
T 1kew_A          156 T--------ETTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYH  202 (361)
T ss_dssp             C--------TTSCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTC
T ss_pred             C--------CCCCCCCCCccHHHHHHHHHHHHHHHHHhCCcEEEEeeceeECCCC
Confidence            0        0011233334444544455555666777788777777 56788654

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=98.50  E-value=6e-07  Score=83.99  Aligned_cols=112  Identities=15%  Similarity=0.205  Sum_probs=76.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcc----------cCCceEEEEecCCCHHhhhCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM----------DTNAVVRGFLGQQQLEDALTG  114 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~----------~~~~~v~~~~~t~d~~eal~~  114 (289)
                      ++|||+|||+ |.+|..++..|+..|+  +|.++|+++...  .++...          .....+..   ++|+++++++
T Consensus        28 ~~mkI~VIGa-G~mG~alA~~La~~G~--~V~l~~r~~~~~--~~i~~~~~~~~~l~g~~l~~~i~~---t~d~~ea~~~   99 (356)
T 3k96_A           28 FKHPIAILGA-GSWGTALALVLARKGQ--KVRLWSYESDHV--DEMQAEGVNNRYLPNYPFPETLKA---YCDLKASLEG   99 (356)
T ss_dssp             CCSCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSCHHHH--HHHHHHSSBTTTBTTCCCCTTEEE---ESCHHHHHTT
T ss_pred             cCCeEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCHHHH--HHHHHcCCCcccCCCCccCCCeEE---ECCHHHHHhc
Confidence            3579999998 9999999999999997  899999975211  111110          01123443   3578889999


Q ss_pred             CCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHh
Q 022947          115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKV  180 (289)
Q Consensus       115 aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~  180 (289)
                      ||+||++.  |              ...++++++.+..+. |+.+++.++|..+.-+..+++++.+.
T Consensus       100 aDvVilaV--p--------------~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~  150 (356)
T 3k96_A          100 VTDILIVV--P--------------SFAFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATE  150 (356)
T ss_dssp             CCEEEECC--C--------------HHHHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHH
T ss_pred             CCEEEECC--C--------------HHHHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHH
Confidence            99999985  2              135777888888876 68888888887654322223444443

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=98.50  E-value=4.5e-07  Score=86.10  Aligned_cols=112  Identities=17%  Similarity=0.263  Sum_probs=73.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccC--------------CceEEEEecCCCHHhhh
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--------------NAVVRGFLGQQQLEDAL  112 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~--------------~~~v~~~~~t~d~~eal  112 (289)
                      |||+|||+ |+||..++..|+. |+  +|+++|+++...  ..+.....              ...+..   ++++.+++
T Consensus         1 MkI~VIG~-G~vG~~~A~~La~-G~--~V~~~d~~~~~~--~~l~~~~~~i~e~~l~~~~~~~~~~l~~---t~~~~~~~   71 (402)
T 1dlj_A            1 MKIAVAGS-GYVGLSLGVLLSL-QN--EVTIVDILPSKV--DKINNGLSPIQDEYIEYYLKSKQLSIKA---TLDSKAAY   71 (402)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTT-TS--EEEEECSCHHHH--HHHHTTCCSSCCHHHHHHHHHSCCCEEE---ESCHHHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHhC-CC--EEEEEECCHHHH--HHHHcCCCCcCCCCHHHHHHhccCcEEE---eCCHHHHh
Confidence            69999998 9999999999988 86  999999976211  11111100              112332   34677889


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEE-ecCCCcccHHH
Q 022947          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL-ISNPVNSTVPI  172 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv-~tNPvd~~t~~  172 (289)
                      ++||+||++...+...+..+.|     +..+.++++.+.+..|+.+|+. .|||.+....+
T Consensus        72 ~~aDvviiavpt~~~~~~~~~d-----l~~v~~v~~~i~~l~~~~iVV~~ST~~~g~~~~l  127 (402)
T 1dlj_A           72 KEAELVIIATPTNYNSRINYFD-----TQHVETVIKEVLSVNSHATLIIKSTIPIGFITEM  127 (402)
T ss_dssp             HHCSEEEECCCCCEETTTTEEC-----CHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHH
T ss_pred             cCCCEEEEecCCCcccCCCCcc-----HHHHHHHHHHHHhhCCCCEEEEeCCCCccHHHHH
Confidence            9999999998766422222322     2345555566655457777776 79999886543

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=98.50  E-value=4.4e-07  Score=83.28  Aligned_cols=175  Identities=13%  Similarity=0.005  Sum_probs=100.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccC---CceEEEEec----CCCHHhhhCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT---NAVVRGFLG----QQQLEDALTGM  115 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~---~~~v~~~~~----t~d~~eal~~a  115 (289)
                      ++|||.|+||+|++|++++..|+..|.  +|+++|++..  .....++.....   ...+..+.+    ..++.++++++
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  103 (352)
T 1sb8_A           26 QPKVWLITGVAGFIGSNLLETLLKLDQ--KVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV  103 (352)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCC
Confidence            356999999999999999999999997  9999998652  111111111000   012222211    12355678999


Q ss_pred             CEEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeee
Q 022947          116 DIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTM  193 (289)
Q Consensus       116 DiVIitag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t~  193 (289)
                      |+||++||.....  ..+..+.+..|+.....+++.+.+....- ++++|... +....-...+.+....++...+|.+.
T Consensus       104 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~-~v~~SS~~-~~~~~~~~~~~E~~~~~~~~~Y~~sK  181 (352)
T 1sb8_A          104 DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQS-FTYAASSS-TYGDHPGLPKVEDTIGKPLSPYAVTK  181 (352)
T ss_dssp             SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSE-EEEEEEGG-GGTTCCCSSBCTTCCCCCCSHHHHHH
T ss_pred             CEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEeccHH-hcCCCCCCCCCCCCCCCCCChhHHHH
Confidence            9999999864211  01234567789999999999988865443 44444221 00000000000000011223344444


Q ss_pred             ccHHHHHHHHHHHcCCCCccee-eeEEcccC
Q 022947          194 LDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (289)
Q Consensus       194 lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg  223 (289)
                      ....++-..+++..|++..-++ +.|+|...
T Consensus       182 ~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~  212 (352)
T 1sb8_A          182 YVNELYADVFSRCYGFSTIGLRYFNVFGRRQ  212 (352)
T ss_dssp             HHHHHHHHHHHHHHCCCCEEEEECCEECTTC
T ss_pred             HHHHHHHHHHHHHcCCCEEEEEECceeCcCC
Confidence            4455555566677788888887 56888754

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=98.49  E-value=1.1e-06  Score=78.69  Aligned_cols=109  Identities=12%  Similarity=0.105  Sum_probs=73.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCC-CccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCC-----CCEEEEc
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTG-----MDIVIIP  121 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g-~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~-----aDiVIit  121 (289)
                      ||.|+||+|++|++++..|+..| .  +|+++++........++........+.   ....+.+.+++     +|+||++
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~~~~~~~~~d~vi~~   75 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGIT--DILVVDNLKDGTKFVNLVDLNIADYMD---KEDFLIQIMAGEEFGDVEAIFHE   75 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCC--CEEEEECCSSGGGGHHHHTSCCSEEEE---HHHHHHHHHTTCCCSSCCEEEEC
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCc--EEEEEccCCCCchhhhcCcceeccccc---cHHHHHHHHhccccCCCcEEEEC
Confidence            58999999999999999999988 6  899999876321111222111111111   12234555664     9999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      ||.......+..+.+..|+.....+++.+.+... - ++++|
T Consensus        76 a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~-~v~~S  115 (310)
T 1eq2_A           76 GACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI-P-FLYAS  115 (310)
T ss_dssp             CSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC-C-EEEEE
T ss_pred             cccccCcccCHHHHHHHHHHHHHHHHHHHHHcCC-e-EEEEe
Confidence            9865433334556788899999999999988766 4 44444

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=98.49  E-value=1e-06  Score=85.56  Aligned_cols=116  Identities=16%  Similarity=0.119  Sum_probs=76.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhC-CCccEEEEEeCCCc--hhHHhhhhccc--C----------------CceEEEEe
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNT--PGVTADISHMD--T----------------NAVVRGFL  103 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~-g~~~eI~LvD~~~~--~g~~~DL~~~~--~----------------~~~v~~~~  103 (289)
                      +.|||+|||+ |++|..+|..|+.. |+. +|+++|+++.  .+.+..|....  .                ...+..  
T Consensus        17 ~~mkIaVIGl-G~mG~~lA~~la~~~G~~-~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~--   92 (478)
T 3g79_A           17 PIKKIGVLGM-GYVGIPAAVLFADAPCFE-KVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFEC--   92 (478)
T ss_dssp             SCCEEEEECC-STTHHHHHHHHHHSTTCC-EEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEE--
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHhCCCC-eEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEE--
Confidence            4679999998 99999999999999 863 8999999874  22333333311  0                123443  


Q ss_pred             cCCCHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEe-cCCCcccH
Q 022947          104 GQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLI-SNPVNSTV  170 (289)
Q Consensus       104 ~t~d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~-tNPvd~~t  170 (289)
                       ++| .+++++||+||++.+.|.....++    ..++..+...++.+.++. |..+|+.- |-|.+..-
T Consensus        93 -ttd-~ea~~~aDvViiaVptp~~~~~~~----~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~  155 (478)
T 3g79_A           93 -TPD-FSRISELDAVTLAIQTPFANPKDL----EPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTE  155 (478)
T ss_dssp             -ESC-GGGGGGCSEEEECCCCCCCSSCCS----SCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTT
T ss_pred             -eCc-HHHHhcCCEEEEecCCchhccCCc----cccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHH
Confidence             456 588999999999998876543221    124556667777777765 45554433 44555433

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=98.48  E-value=1.7e-06  Score=78.72  Aligned_cols=167  Identities=15%  Similarity=0.080  Sum_probs=95.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch----hHHhhhhcccCCceEEEE----ecCCCHHhhhCCCCE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP----GVTADISHMDTNAVVRGF----LGQQQLEDALTGMDI  117 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~----g~~~DL~~~~~~~~v~~~----~~t~d~~eal~~aDi  117 (289)
                      ++||.|+||+|++|++++..|+..|+  +|+.++++...    ....++..   ...+..+    ....++.++++++|+
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~D~   83 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGY--AVNTTVRDPDNQKKVSHLLELQE---LGDLKIFRADLTDELSFEAPIAGCDF   83 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTC--EEEEEESCTTCTTTTHHHHHHGG---GSCEEEEECCTTTSSSSHHHHTTCSE
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCcchhhhHHHHHhcCC---CCcEEEEecCCCChHHHHHHHcCCCE
Confidence            46899999999999999999999998  88887765421    11112221   1122222    122356678899999


Q ss_pred             EEEcCCCCCCCCCc-hhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhC---CC----------
Q 022947          118 VIIPAGVPRKPGMT-RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG---TY----------  183 (289)
Q Consensus       118 VIitag~~~~~g~~-r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~---~~----------  183 (289)
                      ||++|+.......+ ..+++..|+.....+++.+.+...-..|+++|....+..      .....   .+          
T Consensus        84 Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS~~~~~~------~~~~~~~~~~~E~~~~~~~~  157 (338)
T 2rh8_A           84 VFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTI------NQLDGTGLVVDEKNWTDIEF  157 (338)
T ss_dssp             EEEESSCCCC---------CHHHHHHHHHHHHHHHHCTTCCEEEEECCHHHHHH------HHHTCSCCCCCTTTTTCC--
T ss_pred             EEEeCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEecHHHeec------CCcCCCCcccChhhccchhh
Confidence            99999854211111 233678899999999999887642234555443210000      00000   00          


Q ss_pred             --C---CCcEEEeeeccHHHHHHHHHHHcCCCCccee-eeEEcccC
Q 022947          184 --D---PKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (289)
Q Consensus       184 --~---~~kviG~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg  223 (289)
                        |   +.-.++.+.....++...+++..|++..-++ ..|+|...
T Consensus       158 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~  203 (338)
T 2rh8_A          158 LTSAKPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSL  203 (338)
T ss_dssp             -----CCCCCCTTSCCHHHHHHHHHHHHHTCCEEEEEECEEESCCS
T ss_pred             ccccCCccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCC
Confidence              0   0013555554444555555666788777777 55888753

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=98.47  E-value=8.2e-07  Score=80.55  Aligned_cols=116  Identities=15%  Similarity=-0.022  Sum_probs=74.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEec----CCCHHhhhCC--CCEEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG----QQQLEDALTG--MDIVI  119 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~----t~d~~eal~~--aDiVI  119 (289)
                      .|||.|+||+|++|++++..|+..|+  +|+++|++........+........+..+.+    ..++.+++++  .|+||
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   80 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKGY--EVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVY   80 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEEE
Confidence            46899999999999999999999997  9999998762211111111100112322211    1234455665  59999


Q ss_pred             EcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          120 IPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       120 itag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      ++||.....  ..+..+.+..|+.....+++.+.+......++++|
T Consensus        81 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~S  126 (345)
T 2z1m_A           81 NLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQAS  126 (345)
T ss_dssp             ECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             ECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEe
Confidence            999865311  12345567789999999999988775434555554

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=98.47  E-value=1.8e-06  Score=78.19  Aligned_cols=117  Identities=15%  Similarity=-0.001  Sum_probs=76.7

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchh-HHhh-hhcccCCceEEEE-----ecCCCHHhhhCCCC
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTAD-ISHMDTNAVVRGF-----LGQQQLEDALTGMD  116 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g-~~~D-L~~~~~~~~v~~~-----~~t~d~~eal~~aD  116 (289)
                      .+.++|.|+||+|++|++++..|+..|+  +|+++|++.... ...+ +.... ...+..+     ....++.++++++|
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~~~d   85 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGY--KVRGTARSASKLANLQKRWDAKY-PGRFETAVVEDMLKQGAYDEVIKGAA   85 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHS-TTTEEEEECSCTTSTTTTTTTTTTCS
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCcccHHHHHHHhhccC-CCceEEEEecCCcChHHHHHHHcCCC
Confidence            4467999999999999999999999997  999999865211 1111 11000 0122222     11234556678999


Q ss_pred             EEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 022947          117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       117 iVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      +||++||.... +.+..+.+..|+.....+++.+.+......++++|.
T Consensus        86 ~vih~A~~~~~-~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS  132 (342)
T 1y1p_A           86 GVAHIASVVSF-SNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSS  132 (342)
T ss_dssp             EEEECCCCCSC-CSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECC
T ss_pred             EEEEeCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecc
Confidence            99999986532 234556788899999999998875333345555543

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=98.47  E-value=5.8e-07  Score=82.91  Aligned_cols=112  Identities=15%  Similarity=0.111  Sum_probs=75.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHh--CCCccEEEEEeCCCch-----------hHHhhhhcccCCceEEEEe----cCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKI--NPLVSVLHLYDVVNTP-----------GVTADISHMDTNAVVRGFL----GQQQ  107 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~--~g~~~eI~LvD~~~~~-----------g~~~DL~~~~~~~~v~~~~----~t~d  107 (289)
                      ++|||.|+||+|++|++++..|+.  .|.  +|+++|++...           .....+..    ..+..+.    ...+
T Consensus         9 ~~~~vlVTGatG~IG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~d~~~   82 (362)
T 3sxp_A            9 ENQTILITGGAGFVGSNLAFHFQENHPKA--KVVVLDKFRSNTLFSNNRPSSLGHFKNLIG----FKGEVIAADINNPLD   82 (362)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCTTS--EEEEEECCCCC-------CCCCCCGGGGTT----CCSEEEECCTTCHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCC--eEEEEECCCccccccccchhhhhhhhhccc----cCceEEECCCCCHHH
Confidence            467999999999999999999998  787  99999985420           11111111    1112111    1123


Q ss_pred             HHhh-hCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          108 LEDA-LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       108 ~~ea-l~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      +.++ ..++|+||++||.......+..+.+..|+.....+++.+++.... +|.+.|
T Consensus        83 ~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~-~V~~SS  138 (362)
T 3sxp_A           83 LRRLEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAK-VIYASS  138 (362)
T ss_dssp             HHHHTTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCE-EEEEEE
T ss_pred             HHHhhccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCc-EEEeCc
Confidence            4445 689999999999654333445677889999999999999887654 443333

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=98.46  E-value=8.1e-07  Score=80.64  Aligned_cols=101  Identities=16%  Similarity=0.182  Sum_probs=67.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch-hHHhh--------hhcccC--------------CceEEEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTAD--------ISHMDT--------------NAVVRGF  102 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~-g~~~D--------L~~~~~--------------~~~v~~~  102 (289)
                      ++||+|||+ |.+|+.+|..|+..|+  +|+++|+++.. ....+        +.....              ..++.. 
T Consensus        15 ~~~I~VIG~-G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~-   90 (302)
T 1f0y_A           15 VKHVTVIGG-GLMGAGIAQVAAATGH--TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT-   90 (302)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE-
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEE-
Confidence            468999998 9999999999999998  99999998621 11100        000000              012333 


Q ss_pred             ecCCCHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcc
Q 022947          103 LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS  168 (289)
Q Consensus       103 ~~t~d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~  168 (289)
                        ++|+++++++||+||++..              .+..+.+++.+.+.++. |++++  +||...+
T Consensus        91 --~~~~~~~~~~aD~Vi~avp--------------~~~~~~~~v~~~l~~~~~~~~iv--~s~ts~i  139 (302)
T 1f0y_A           91 --STDAASVVHSTDLVVEAIV--------------ENLKVKNELFKRLDKFAAEHTIF--ASNTSSL  139 (302)
T ss_dssp             --ESCHHHHTTSCSEEEECCC--------------SCHHHHHHHHHHHTTTSCTTCEE--EECCSSS
T ss_pred             --ecCHHHhhcCCCEEEEcCc--------------CcHHHHHHHHHHHHhhCCCCeEE--EECCCCC
Confidence              3577778999999999852              23455667777888776 56655  4555443

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=98.45  E-value=4.8e-07  Score=81.65  Aligned_cols=168  Identities=13%  Similarity=0.086  Sum_probs=96.4

Q ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEe----cCCCHHhhhCC--CC
Q 022947           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL----GQQQLEDALTG--MD  116 (289)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~----~t~d~~eal~~--aD  116 (289)
                      +.+.++|.|+||+|++|++++..|+..|.  +|+++|++... ..  +       .+..+.    ...++.+++++  .|
T Consensus         9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~-~~--l-------~~~~~~~Dl~d~~~~~~~~~~~~~d   76 (321)
T 2pk3_A            9 HHGSMRALITGVAGFVGKYLANHLTEQNV--EVFGTSRNNEA-KL--P-------NVEMISLDIMDSQRVKKVISDIKPD   76 (321)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCTTC-CC--T-------TEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             ccCcceEEEECCCChHHHHHHHHHHHCCC--EEEEEecCCcc-cc--c-------eeeEEECCCCCHHHHHHHHHhcCCC
Confidence            34567999999999999999999999997  99999987632 11  1       111111    11234455665  89


Q ss_pred             EEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHH--HHHHHHHhCCCCCCcEEEee
Q 022947          117 IVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPI--AAEVFKKVGTYDPKRLLGVT  192 (289)
Q Consensus       117 iVIitag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~--~~~~~~~~~~~~~~kviG~t  192 (289)
                      +||++||.....  ..+..+.+..|+.....+++.+.+......++++|... +....  -...+.+....++...+|.+
T Consensus        77 ~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~-v~g~~~~~~~~~~E~~~~~~~~~Y~~s  155 (321)
T 2pk3_A           77 YIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSE-EYGMILPEESPVSEENQLRPMSPYGVS  155 (321)
T ss_dssp             EEEECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEGG-GTBSCCGGGCSBCTTSCCBCCSHHHHH
T ss_pred             EEEEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEccHH-hcCCCCCCCCCCCCCCCCCCCCccHHH
Confidence            999999864311  12345677889999999999997664344555554321 00000  00000000112233334444


Q ss_pred             eccHHHHHHHHHHHcCCCCccee-eeEEcccC
Q 022947          193 MLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (289)
Q Consensus       193 ~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg  223 (289)
                      .....++-..+++..|++..-++ +.++|...
T Consensus       156 K~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~  187 (321)
T 2pk3_A          156 KASVGMLARQYVKAYGMDIIHTRTFNHIGPGQ  187 (321)
T ss_dssp             HHHHHHHHHHHHHHHCCEEEEEEECEEECTTC
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEEeCcccCcCC
Confidence            44444555556666677766666 46777654

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=98.45  E-value=3.2e-07  Score=83.09  Aligned_cols=167  Identities=16%  Similarity=0.105  Sum_probs=95.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEe-c---CCCHHhhhC--CCCEEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-G---QQQLEDALT--GMDIVI  119 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~-~---t~d~~eal~--~aDiVI  119 (289)
                      ||||.|+||+|++|++++..|+..|+  +|+++|++..... ..+..     .+..+. +   ..++.++++  ++|+||
T Consensus         1 M~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~-~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~d~vi   72 (330)
T 2c20_A            1 MNSILICGGAGYIGSHAVKKLVDEGL--SVVVVDNLQTGHE-DAITE-----GAKFYNGDLRDKAFLRDVFTQENIEAVM   72 (330)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCG-GGSCT-----TSEEEECCTTCHHHHHHHHHHSCEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCCCcCch-hhcCC-----CcEEEECCCCCHHHHHHHHhhcCCCEEE
Confidence            46999999999999999999999997  9999998652111 11111     111111 1   123445666  899999


Q ss_pred             EcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeeccHH
Q 022947          120 IPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVV  197 (289)
Q Consensus       120 itag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t~lds~  197 (289)
                      ++||.....  ..+..+.+..|+.....+++.+.+.... .++++|.. .+...--...+.+....++...+|.+.....
T Consensus        73 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~Ss~-~~~~~~~~~~~~E~~~~~~~~~Y~~sK~~~e  150 (330)
T 2c20_A           73 HFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVD-KFIFSSTA-ATYGEVDVDLITEETMTNPTNTYGETKLAIE  150 (330)
T ss_dssp             ECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEECCG-GGGCSCSSSSBCTTSCCCCSSHHHHHHHHHH
T ss_pred             ECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHcCCC-EEEEeCCc-eeeCCCCCCCCCcCCCCCCCChHHHHHHHHH
Confidence            999864311  0123456778999999999998876544 34444431 1100000000000001122233344444444


Q ss_pred             HHHHHHHHHcCCCCccee-eeEEccc
Q 022947          198 RANTFVAEVLGLDPREVD-VPVVGGH  222 (289)
Q Consensus       198 R~~~~lA~~l~v~~~~V~-~~V~G~h  222 (289)
                      ++-..+++..+++..-++ ..|+|.+
T Consensus       151 ~~~~~~~~~~~~~~~ilrp~~v~G~~  176 (330)
T 2c20_A          151 KMLHWYSQASNLRYKIFRYFNVAGAT  176 (330)
T ss_dssp             HHHHHHHHTSSCEEEEEECSEEECCC
T ss_pred             HHHHHHHHHhCCcEEEEecCcccCCC
Confidence            555556666677776676 5688864

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=98.44  E-value=4.4e-07  Score=81.53  Aligned_cols=162  Identities=15%  Similarity=0.088  Sum_probs=92.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--hHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      +++||.|+||+|++|++++..|+..|+  +|+++|++...  +....+........+.      -+..++.++|+||++|
T Consensus         6 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~------~~~~Dl~~~d~vi~~a   77 (321)
T 3vps_A            6 LKHRILITGGAGFIGGHLARALVASGE--EVTVLDDLRVPPMIPPEGTGKFLEKPVLE------LEERDLSDVRLVYHLA   77 (321)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--CEEEECCCSSCCSSCCTTSSEEECSCGGG------CCHHHHTTEEEEEECC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHHCCC--EEEEEecCCcccccchhhhhhhccCCCee------EEeCccccCCEEEECC
Confidence            367999999999999999999999997  89999986521  1111111110011111      1234566999999999


Q ss_pred             CCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC-----c-ccHHHHHHHHHHhCCCCCCcEEEeeec
Q 022947          123 GVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV-----N-STVPIAAEVFKKVGTYDPKRLLGVTML  194 (289)
Q Consensus       123 g~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPv-----d-~~t~~~~~~~~~~~~~~~~kviG~t~l  194 (289)
                      +.....  .....+.+. |+...+.+++.+.+....-+|.+.|.-+     + .++        +.....+...+|.+..
T Consensus        78 ~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~~~v~~SS~~v~~~~~~~~~~--------E~~~~~p~~~Y~~sK~  148 (321)
T 3vps_A           78 SHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVPKVVVGSTCEVYGQADTLPTP--------EDSPLSPRSPYAASKV  148 (321)
T ss_dssp             CCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSSSSBC--------TTSCCCCCSHHHHHHH
T ss_pred             ccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCCCeEEEecCHHHhCCCCCCCCC--------CCCCCCCCChhHHHHH
Confidence            865311  112233455 9999999999999887554444333110     0 000        0011222333344444


Q ss_pred             cHHHHHHHHHHHcCC-CCccee-eeEEcccC
Q 022947          195 DVVRANTFVAEVLGL-DPREVD-VPVVGGHA  223 (289)
Q Consensus       195 ds~R~~~~lA~~l~v-~~~~V~-~~V~G~hg  223 (289)
                      ...++...+++..++ +..-++ ..++|...
T Consensus       149 ~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~  179 (321)
T 3vps_A          149 GLEMVAGAHQRASVAPEVGIVRFFNVYGPGE  179 (321)
T ss_dssp             HHHHHHHHHHHSSSSCEEEEEEECEEECTTC
T ss_pred             HHHHHHHHHHHHcCCCceEEEEeccccCcCC
Confidence            444455555555666 555555 45777653

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=98.43  E-value=1.6e-06  Score=73.69  Aligned_cols=102  Identities=11%  Similarity=0.074  Sum_probs=68.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEec-CCCHHhhhCCCCEEEEcCCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~-t~d~~eal~~aDiVIitag~~  125 (289)
                      |||.|+||+|++|+.++..|+..|+  +|+++++++....  ++. .  ...+..... ..+. +++.++|+||+++|.+
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~--~~~-~--~~~~~~~D~~d~~~-~~~~~~d~vi~~ag~~   72 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGH--EVTAIVRNAGKIT--QTH-K--DINILQKDIFDLTL-SDLSDQNVVVDAYGIS   72 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCSHHHH--HHC-S--SSEEEECCGGGCCH-HHHTTCSEEEECCCSS
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC--EEEEEEcCchhhh--hcc-C--CCeEEeccccChhh-hhhcCCCEEEECCcCC
Confidence            6899999999999999999999997  9999999762211  111 1  111111000 1122 6789999999999875


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 022947          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      ...       ...|+...+.+++.+++... ..++++|.
T Consensus        73 ~~~-------~~~~~~~~~~l~~a~~~~~~-~~~v~~SS  103 (221)
T 3ew7_A           73 PDE-------AEKHVTSLDHLISVLNGTVS-PRLLVVGG  103 (221)
T ss_dssp             TTT-------TTSHHHHHHHHHHHHCSCCS-SEEEEECC
T ss_pred             ccc-------cchHHHHHHHHHHHHHhcCC-ceEEEEec
Confidence            321       24588889999999887643 34554443

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=98.42  E-value=3.2e-06  Score=76.87  Aligned_cols=117  Identities=14%  Similarity=0.064  Sum_probs=74.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch-hHHhhhhcccC-CceEEEE----ecCCCHHhhhCCCCEE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDT-NAVVRGF----LGQQQLEDALTGMDIV  118 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~-g~~~DL~~~~~-~~~v~~~----~~t~d~~eal~~aDiV  118 (289)
                      +++||.|+||+|++|++++..|+..|+  +|+.++++... ....++..... ...+..+    ....++.++++++|+|
T Consensus         4 ~~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V   81 (337)
T 2c29_D            4 QSETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGV   81 (337)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSEE
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCEE
Confidence            456899999999999999999999997  88888776521 11111111100 0122221    1223466788999999


Q ss_pred             EEcCCCCCCCCCc-hhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          119 IIPAGVPRKPGMT-RDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       119 Iitag~~~~~g~~-r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      |++|+.......+ ..+++..|+.....+++.+.+...-..|+++|
T Consensus        82 ih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~S  127 (337)
T 2c29_D           82 FHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTS  127 (337)
T ss_dssp             EECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred             EEeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEee
Confidence            9999754211122 23467889999999999988876233455544

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=98.41  E-value=1.1e-06  Score=75.15  Aligned_cols=102  Identities=19%  Similarity=0.121  Sum_probs=69.4

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEE--EecCCCHHhhhCCCCEEEEcCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG--FLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~--~~~t~d~~eal~~aDiVIitag~  124 (289)
                      |||.|+||+|++|+.++..|+..|.  +|+++++++..  ..++....  ..+..  +.. .+. +++.++|+||.++|.
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~--~~~~~~~~--~~~~~~D~~d-~~~-~~~~~~d~vi~~ag~   72 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGH--EVLAVVRDPQK--AADRLGAT--VATLVKEPLV-LTE-ADLDSVDAVVDALSV   72 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHH--HHHHTCTT--SEEEECCGGG-CCH-HHHTTCSEEEECCCC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCC--EEEEEEecccc--cccccCCC--ceEEeccccc-ccH-hhcccCCEEEECCcc
Confidence            6899999999999999999999997  99999987521  11121111  11111  111 122 678999999999987


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      ...+.     ....|+...+.+++.+++..  ..++++|
T Consensus        73 ~~~~~-----~~~~n~~~~~~l~~a~~~~~--~~~v~~S  104 (224)
T 3h2s_A           73 PWGSG-----RGYLHLDFATHLVSLLRNSD--TLAVFIL  104 (224)
T ss_dssp             CTTSS-----CTHHHHHHHHHHHHTCTTCC--CEEEEEC
T ss_pred             CCCcc-----hhhHHHHHHHHHHHHHHHcC--CcEEEEe
Confidence            52222     13468899999999888776  4555554

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=98.39  E-value=8e-07  Score=86.44  Aligned_cols=118  Identities=21%  Similarity=0.335  Sum_probs=75.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHh-h----hhc---ccC---------CceEEEEecCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTA-D----ISH---MDT---------NAVVRGFLGQQQ  107 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~-D----L~~---~~~---------~~~v~~~~~t~d  107 (289)
                      .+||+|||+ |.+|+.+|..++..|+  +|+++|+++. ..... .    +..   ...         ..++..   +++
T Consensus         5 ~~kVgVIGa-G~MG~~IA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~---~~~   78 (483)
T 3mog_A            5 VQTVAVIGS-GTMGAGIAEVAASHGH--QVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIP---VTD   78 (483)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEE---ECC
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeE---eCC
Confidence            459999998 9999999999999998  9999999871 11111 0    110   000         113443   346


Q ss_pred             HHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCC
Q 022947          108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK  186 (289)
Q Consensus       108 ~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~  186 (289)
                      + +++++||+||++..              .+..+.+++.+++.+++ |++++  +||.+.+-..   + +..... .+.
T Consensus        79 ~-~~~~~aDlVIeAVp--------------e~~~vk~~v~~~l~~~~~~~~Il--asntSti~i~---~-ia~~~~-~p~  136 (483)
T 3mog_A           79 I-HALAAADLVIEAAS--------------ERLEVKKALFAQLAEVCPPQTLL--TTNTSSISIT---A-IAAEIK-NPE  136 (483)
T ss_dssp             G-GGGGGCSEEEECCC--------------CCHHHHHHHHHHHHHHSCTTCEE--EECCSSSCHH---H-HTTTSS-SGG
T ss_pred             H-HHhcCCCEEEEcCC--------------CcHHHHHHHHHHHHHhhccCcEE--EecCCCCCHH---H-HHHHcc-Ccc
Confidence            6 67999999999852              24567778888888887 56655  4666554321   1 122222 345


Q ss_pred             cEEEe
Q 022947          187 RLLGV  191 (289)
Q Consensus       187 kviG~  191 (289)
                      +++|+
T Consensus       137 ~~ig~  141 (483)
T 3mog_A          137 RVAGL  141 (483)
T ss_dssp             GEEEE
T ss_pred             ceEEe
Confidence            77776

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=98.39  E-value=1.5e-06  Score=84.74  Aligned_cols=102  Identities=19%  Similarity=0.137  Sum_probs=70.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhH--HhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~--~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      +|||.|+||+|++|++++..|+..|+  +|+.++++.....  ..|+.              +.+.+++.++|+||++||
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~--~V~~l~R~~~~~~~v~~d~~--------------~~~~~~l~~~D~Vih~A~  210 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGH--EVIQLVRKEPKPGKRFWDPL--------------NPASDLLDGADVLVHLAG  210 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSSCCTTCEECCTT--------------SCCTTTTTTCSEEEECCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCCccceeeccc--------------chhHHhcCCCCEEEECCC
Confidence            78999999999999999999999998  9999998763211  11111              122467899999999998


Q ss_pred             CCCCC---CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          124 VPRKP---GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       124 ~~~~~---g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      .....   .....+++..|+.....+++.+.+...-..+|++|
T Consensus       211 ~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~S  253 (516)
T 3oh8_A          211 EPIFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISAS  253 (516)
T ss_dssp             C-----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEE
T ss_pred             CccccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence            65221   22345567889999999999855444333444444

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=98.39  E-value=8e-07  Score=90.48  Aligned_cols=137  Identities=18%  Similarity=0.258  Sum_probs=85.3

Q ss_pred             ccccccccccccccCCC--------CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc---hhH--Hhhh---
Q 022947           27 EGESSGLGRMDCRAKGG--------SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGV--TADI---   90 (289)
Q Consensus        27 ~~~~~~~~~~~~~~~~~--------~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~---~g~--~~DL---   90 (289)
                      ||-..||.+....+..+        ..++||+|||+ |.+|+.+|..++..|+  +|+++|+++.   .+.  ..+.   
T Consensus       285 ~~~~aF~~kr~~~~~~~~~~~~~~~~~~~kV~VIGa-G~MG~~iA~~la~aG~--~V~l~D~~~~~~~~~~~~i~~~l~~  361 (725)
T 2wtb_A          285 GLIHVFFSQRGTAKVPGVTDRGLVPRKIKKVAIIGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVKANLQS  361 (725)
T ss_dssp             HHHHHHHHHHGGGCCTTTSSSCCCCCCCCCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhhhcccCCCCccccccccCcEEEEEcC-CHhhHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHH
Confidence            44455666554443322        23568999998 9999999999999998  9999999861   111  0111   


Q ss_pred             -hccc---------CCceEEEEecCCCHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEE
Q 022947           91 -SHMD---------TNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIV  159 (289)
Q Consensus        91 -~~~~---------~~~~v~~~~~t~d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiv  159 (289)
                       ....         ...+++.   ++|+ +++++||+||++..              .+..+.+++.+.+.+++ |++++
T Consensus       362 ~~~~G~~~~~~~~~~~~~i~~---~~d~-~~~~~aDlVIeaVp--------------e~~~vk~~v~~~l~~~~~~~~Il  423 (725)
T 2wtb_A          362 RVRKGSMSQEKFEKTMSLLKG---SLDY-ESFRDVDMVIEAVI--------------ENISLKQQIFADLEKYCPQHCIL  423 (725)
T ss_dssp             TTC----CTTHHHHTTTSEEE---ESSS-GGGTTCSEEEECCC--------------SCHHHHHHHHHHHHHHSCTTCEE
T ss_pred             HHhcCCCCHHHHHHHhcceEE---eCCH-HHHCCCCEEEEcCc--------------CCHHHHHHHHHHHHhhCCCCcEE
Confidence             0000         1123443   3466 78999999999852              35666778888888887 45644


Q ss_pred             EEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022947          160 NLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (289)
Q Consensus       160 iv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~  191 (289)
                        +||...+-..   + +.+.. -.+++++|+
T Consensus       424 --asntStl~i~---~-la~~~-~~p~~~iG~  448 (725)
T 2wtb_A          424 --ASNTSTIDLN---K-IGERT-KSQDRIVGA  448 (725)
T ss_dssp             --EECCSSSCHH---H-HTTTC-SCTTTEEEE
T ss_pred             --EeCCCCCCHH---H-HHHHh-cCCCCEEEe
Confidence              6787654321   1 22222 234577765

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=98.38  E-value=1e-06  Score=80.95  Aligned_cols=171  Identities=16%  Similarity=0.085  Sum_probs=96.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEec----CCCHHhhhCC--CCE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG----QQQLEDALTG--MDI  117 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~~----t~d~~eal~~--aDi  117 (289)
                      .|+|.|+||+|++|++++..|+..|+  +|+++|++..  ......+..   ...+..+.+    ..++.+++++  .|+
T Consensus         9 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~d~   83 (357)
T 1rkx_A            9 GKRVFVTGHTGFKGGWLSLWLQTMGA--TVKGYSLTAPTVPSLFETARV---ADGMQSEIGDIRDQNKLLESIREFQPEI   83 (357)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCSSSSCHHHHTTT---TTTSEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCC--eEEEEeCCCcccchhhHhhcc---CCceEEEEccccCHHHHHHHHHhcCCCE
Confidence            46999999999999999999999997  9999998762  111111110   111221111    1234455665  899


Q ss_pred             EEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHH-HHHHHhCCCCCCcEEEeeec
Q 022947          118 VIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAA-EVFKKVGTYDPKRLLGVTML  194 (289)
Q Consensus       118 VIitag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~-~~~~~~~~~~~~kviG~t~l  194 (289)
                      ||++||.+...  .....+.+..|+.....+++.+.+......++++|... +...--. ..+.+....++...+|.+..
T Consensus        84 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~-vyg~~~~~~~~~E~~~~~~~~~Y~~sK~  162 (357)
T 1rkx_A           84 VFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDK-CYDNKEWIWGYRENEAMGGYDPYSNSKG  162 (357)
T ss_dssp             EEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGG-GBCCCCSSSCBCTTSCBCCSSHHHHHHH
T ss_pred             EEECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecCHH-HhCCCCcCCCCCCCCCCCCCCccHHHHH
Confidence            99999864211  11234567789999999999988875334555554321 0000000 00000011223333444444


Q ss_pred             cHHHHHHHHHHHc---------CCCCccee-eeEEccc
Q 022947          195 DVVRANTFVAEVL---------GLDPREVD-VPVVGGH  222 (289)
Q Consensus       195 ds~R~~~~lA~~l---------~v~~~~V~-~~V~G~h  222 (289)
                      ...++-..+++.+         |++..-++ +.|+|..
T Consensus       163 ~~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~  200 (357)
T 1rkx_A          163 CAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGG  200 (357)
T ss_dssp             HHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTT
T ss_pred             HHHHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCC
Confidence            4445555555554         77777776 5688864

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=98.38  E-value=1.4e-06  Score=84.57  Aligned_cols=104  Identities=13%  Similarity=0.160  Sum_probs=72.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcc-------c---------CCceEEEEecCCCH
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-------D---------TNAVVRGFLGQQQL  108 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~-------~---------~~~~v~~~~~t~d~  108 (289)
                      ..|||+|||+ |+||..+|..|+..|+  +|+++|+++..  +..+...       .         ...++..   ++|+
T Consensus         7 ~~~~I~VIG~-G~vG~~lA~~la~~G~--~V~~~d~~~~~--v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~---ttd~   78 (478)
T 2y0c_A            7 GSMNLTIIGS-GSVGLVTGACLADIGH--DVFCLDVDQAK--IDILNNGGVPIHEPGLKEVIARNRSAGRLRF---STDI   78 (478)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---ECCH
T ss_pred             CCceEEEECc-CHHHHHHHHHHHhCCC--EEEEEECCHHH--HHHHHCCCCCcCCCCHHHHHHHhcccCCEEE---ECCH
Confidence            3579999998 9999999999999998  99999998621  1111110       0         0123443   4577


Q ss_pred             HhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEe
Q 022947          109 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLI  162 (289)
Q Consensus       109 ~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~  162 (289)
                      ++++++||+||++.+.|.+...      ..++..++++++.+.++. |+.+|+..
T Consensus        79 ~~a~~~aDvviiaVptp~~~~~------~~dl~~v~~v~~~i~~~l~~~~iVV~~  127 (478)
T 2y0c_A           79 EAAVAHGDVQFIAVGTPPDEDG------SADLQYVLAAARNIGRYMTGFKVIVDK  127 (478)
T ss_dssp             HHHHHHCSEEEECCCCCBCTTS------SBCCHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred             HHHhhcCCEEEEEeCCCcccCC------CccHHHHHHHHHHHHHhcCCCCEEEEe
Confidence            7889999999999888754332      134566777888888776 56655543

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=98.38  E-value=7.7e-07  Score=76.25  Aligned_cols=101  Identities=19%  Similarity=0.217  Sum_probs=70.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEe----c-CCCHHhhhCCCCEEEEc
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL----G-QQQLEDALTGMDIVIIP  121 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~----~-t~d~~eal~~aDiVIit  121 (289)
                      |||.|+||+|++|+.++..|+..|.  +|+++++++....  ++      ..+..+.    . ..++.++++++|+||.+
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~--~~------~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~   70 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDY--QIYAGARKVEQVP--QY------NNVKAVHFDVDWTPEEMAKQLHGMDAIINV   70 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSC--EEEEEESSGGGSC--CC------TTEEEEECCTTSCHHHHHTTTTTCSEEEEC
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCccchh--hc------CCceEEEecccCCHHHHHHHHcCCCEEEEC
Confidence            5999999999999999999999997  9999998762111  11      1112111    1 12456778999999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 022947          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      +|....      +.+..|+.....+++.+++.... .++++|.
T Consensus        71 ag~~~~------~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS  106 (219)
T 3dqp_A           71 SGSGGK------SLLKVDLYGAVKLMQAAEKAEVK-RFILLST  106 (219)
T ss_dssp             CCCTTS------SCCCCCCHHHHHHHHHHHHTTCC-EEEEECC
T ss_pred             CcCCCC------CcEeEeHHHHHHHHHHHHHhCCC-EEEEECc
Confidence            987642      24456788888888888876544 4444443

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=98.38  E-value=3.4e-06  Score=75.95  Aligned_cols=158  Identities=15%  Similarity=0.125  Sum_probs=93.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhC--CCCEEEEcCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVIIPAG  123 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~--~aDiVIitag  123 (289)
                      +|||.|+||+|++|++++..|+..|+  +|++++.+.    ..|+.+.            .++.++++  ++|+||++|+
T Consensus         3 ~~~ilVtGatG~iG~~l~~~L~~~g~--~v~~~~r~~----~~D~~d~------------~~~~~~~~~~~~d~vih~a~   64 (321)
T 1e6u_A            3 KQRVFIAGHRGMVGSAIRRQLEQRGD--VELVLRTRD----ELNLLDS------------RAVHDFFASERIDQVYLAAA   64 (321)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTT--EEEECCCTT----TCCTTCH------------HHHHHHHHHHCCSEEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--eEEEEecCc----cCCccCH------------HHHHHHHHhcCCCEEEEcCe
Confidence            46999999999999999999999887  788887542    1233321            23456677  9999999998


Q ss_pred             CCCCC---CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHH----HHHHHHHHhCCCCCC-cEEEeeecc
Q 022947          124 VPRKP---GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP----IAAEVFKKVGTYDPK-RLLGVTMLD  195 (289)
Q Consensus       124 ~~~~~---g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~----~~~~~~~~~~~~~~~-kviG~t~ld  195 (289)
                      .....   ..+..+++..|+...+.+++.+.+.... .++.+|... +.-.    ...|-........|. ..+|.+.+.
T Consensus        65 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~~-vyg~~~~~~~~E~~~~~~~~~p~~~~Y~~sK~~  142 (321)
T 1e6u_A           65 KVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVN-KLLFLGSSC-IYPKLAKQPMAESELLQGTLEPTNEPYAIAKIA  142 (321)
T ss_dssp             CCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEECCGG-GSCTTCCSSBCGGGTTSSCCCGGGHHHHHHHHH
T ss_pred             ecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEccHH-HcCCCCCCCcCccccccCCCCCCCCccHHHHHH
Confidence            65311   1123456778999999999999886543 444444321 1000    000000000001111 133334344


Q ss_pred             HHHHHHHHHHHcCCCCccee-eeEEcccC
Q 022947          196 VVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (289)
Q Consensus       196 s~R~~~~lA~~l~v~~~~V~-~~V~G~hg  223 (289)
                      ..++...+++..+++..-++ ..|+|...
T Consensus       143 ~E~~~~~~~~~~~~~~~ilrp~~v~G~~~  171 (321)
T 1e6u_A          143 GIKLCESYNRQYGRDYRSVMPTNLYGPHD  171 (321)
T ss_dssp             HHHHHHHHHHHHCCEEEEEEECEEESTTC
T ss_pred             HHHHHHHHHHHhCCCEEEEEeCCcCCcCC
Confidence            44444555666688777777 56888654

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=98.38  E-value=3.7e-06  Score=76.78  Aligned_cols=168  Identities=12%  Similarity=0.018  Sum_probs=95.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      ++||.|+||+|++|++++..|+..|.  +|+++|++..  .....++..   ...+..+... -...++.++|+||++||
T Consensus        27 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D-~~~~~~~~~d~vih~A~  100 (343)
T 2b69_A           27 RKRILITGGAGFVGSHLTDKLMMDGH--EVTVVDNFFTGRKRNVEHWIG---HENFELINHD-VVEPLYIEVDQIYHLAS  100 (343)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCGGGTGGGTT---CTTEEEEECC-TTSCCCCCCSEEEECCS
T ss_pred             CCEEEEEcCccHHHHHHHHHHHHCCC--EEEEEeCCCccchhhhhhhcc---CCceEEEeCc-cCChhhcCCCEEEECcc
Confidence            57999999999999999999999987  9999998642  111111111   1233333221 11245789999999998


Q ss_pred             CCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHH----HHHHHHH-HhCCCCCCcEEEeeeccH
Q 022947          124 VPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP----IAAEVFK-KVGTYDPKRLLGVTMLDV  196 (289)
Q Consensus       124 ~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~----~~~~~~~-~~~~~~~~kviG~t~lds  196 (289)
                      .....  ..+..+.+..|+.....+++.+.+...  .++++|.. .+...    ...|-.+ .....++...+|.+.+..
T Consensus       101 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~SS~-~v~g~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~  177 (343)
T 2b69_A          101 PASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--RLLLASTS-EVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVA  177 (343)
T ss_dssp             CCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEEEG-GGGBSCSSSSBCTTCCCBCCSSSTTHHHHHHHHHH
T ss_pred             ccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC--cEEEECcH-HHhCCCCCCCCcccccccCCCCCCCCchHHHHHHH
Confidence            64311  122345678899999999999988764  45554421 11000    0000000 000011122233343334


Q ss_pred             HHHHHHHHHHcCCCCccee-eeEEccc
Q 022947          197 VRANTFVAEVLGLDPREVD-VPVVGGH  222 (289)
Q Consensus       197 ~R~~~~lA~~l~v~~~~V~-~~V~G~h  222 (289)
                      .++...+++..+++..-++ ..|+|..
T Consensus       178 E~~~~~~~~~~~~~~~ilrp~~v~G~~  204 (343)
T 2b69_A          178 ETMCYAYMKQEGVEVRVARIFNTFGPR  204 (343)
T ss_dssp             HHHHHHHHHHHCCCEEEEEECCEECTT
T ss_pred             HHHHHHHHHHhCCcEEEEEEcceeCcC
Confidence            4444555666677776666 5577764

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=98.38  E-value=2.7e-06  Score=76.20  Aligned_cols=98  Identities=20%  Similarity=0.231  Sum_probs=68.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~~  126 (289)
                      |||.|+||+|+||++++..|..+|+  +|+.+.+++..+            .+..  ...+ .++++++|.||.++|.+-
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~--~V~~l~R~~~~~------------~~~~--~~~~-~~~l~~~d~vihla~~~i   63 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGH--EVTLVSRKPGPG------------RITW--DELA-ASGLPSCDAAVNLAGENI   63 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCTT------------EEEH--HHHH-HHCCCSCSEEEECCCCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCcC------------eeec--chhh-HhhccCCCEEEEeccCcc
Confidence            7999999999999999999999998  999998765211            1110  0012 366899999999987532


Q ss_pred             CC-----C-CchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEE
Q 022947          127 KP-----G-MTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNL  161 (289)
Q Consensus       127 ~~-----g-~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv  161 (289)
                      ..     . ....++...|+...+.+.+.+++.. +...++.
T Consensus        64 ~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~  105 (298)
T 4b4o_A           64 LNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVL  105 (298)
T ss_dssp             SCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEE
T ss_pred             cchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEE
Confidence            11     1 1134566778889999998888765 3334443

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=98.37  E-value=4.4e-07  Score=78.86  Aligned_cols=109  Identities=18%  Similarity=0.144  Sum_probs=66.5

Q ss_pred             cccccccccccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEE-EeCCCchhHHhhhhcccCCceEEEEecCCCH
Q 022947           30 SSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHL-YDVVNTPGVTADISHMDTNAVVRGFLGQQQL  108 (289)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~L-vD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~  108 (289)
                      +++.-..+|.+. ++++|||+|||+ |.+|..++..|...|+  +|.+ +|+++....  ++.... .....    .++ 
T Consensus         8 ~~~~~~~~~~~~-~m~mmkI~IIG~-G~mG~~la~~l~~~g~--~V~~v~~r~~~~~~--~l~~~~-g~~~~----~~~-   75 (220)
T 4huj_A            8 SSGVDLGTENLY-FQSMTTYAIIGA-GAIGSALAERFTAAQI--PAIIANSRGPASLS--SVTDRF-GASVK----AVE-   75 (220)
T ss_dssp             ---------CTT-GGGSCCEEEEEC-HHHHHHHHHHHHHTTC--CEEEECTTCGGGGH--HHHHHH-TTTEE----ECC-
T ss_pred             cccccccccchh-hhcCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCCHHHHH--HHHHHh-CCCcc----cCh-
Confidence            344444455554 566789999998 9999999999999887  8888 888763211  111110 01111    123 


Q ss_pred             HhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 022947          109 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (289)
Q Consensus       109 ~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd  167 (289)
                      .++++++|+||++..    +            ..+.++++.+.. .++.+++-++||.+
T Consensus        76 ~~~~~~aDvVilavp----~------------~~~~~v~~~l~~-~~~~ivi~~~~g~~  117 (220)
T 4huj_A           76 LKDALQADVVILAVP----Y------------DSIADIVTQVSD-WGGQIVVDASNAID  117 (220)
T ss_dssp             HHHHTTSSEEEEESC----G------------GGHHHHHTTCSC-CTTCEEEECCCCBC
T ss_pred             HHHHhcCCEEEEeCC----h------------HHHHHHHHHhhc-cCCCEEEEcCCCCC
Confidence            467899999999852    1            123445555554 46778888899984

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=98.37  E-value=1.5e-06  Score=79.35  Aligned_cols=118  Identities=22%  Similarity=0.253  Sum_probs=75.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhh-hhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTAD-ISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~D-L~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      .+||+|||+ |.+|+.+|..++ .|+  +|+++|+++. .....+ +.+.. ...++.   +++++ ++++||+||.+..
T Consensus        12 ~~~V~vIG~-G~MG~~iA~~la-aG~--~V~v~d~~~~~~~~~~~~l~~~~-~~~i~~---~~~~~-~~~~aDlVieavp   82 (293)
T 1zej_A           12 HMKVFVIGA-GLMGRGIAIAIA-SKH--EVVLQDVSEKALEAAREQIPEEL-LSKIEF---TTTLE-KVKDCDIVMEAVF   82 (293)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHH-TTS--EEEEECSCHHHHHHHHHHSCGGG-GGGEEE---ESSCT-TGGGCSEEEECCC
T ss_pred             CCeEEEEee-CHHHHHHHHHHH-cCC--EEEEEECCHHHHHHHHHHHHHHH-hCCeEE---eCCHH-HHcCCCEEEEcCc
Confidence            469999998 999999999999 998  9999999872 111222 21111 123443   24564 4899999999852


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeec
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTML  194 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t~l  194 (289)
                                    ++..+.+.+...+... |++++  +||.+.+-..   + +..... .+.|++|+-.+
T Consensus        83 --------------e~~~vk~~l~~~l~~~-~~~Il--asntSti~~~---~-~a~~~~-~~~r~~G~Hf~  131 (293)
T 1zej_A           83 --------------EDLNTKVEVLREVERL-TNAPL--CSNTSVISVD---D-IAERLD-SPSRFLGVHWM  131 (293)
T ss_dssp             --------------SCHHHHHHHHHHHHTT-CCSCE--EECCSSSCHH---H-HHTTSS-CGGGEEEEEEC
T ss_pred             --------------CCHHHHHHHHHHHhcC-CCCEE--EEECCCcCHH---H-HHHHhh-cccceEeEEec
Confidence                          3456666677778888 88877  4565443221   1 222222 34577777433

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=98.35  E-value=2e-06  Score=79.82  Aligned_cols=171  Identities=15%  Similarity=0.018  Sum_probs=99.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCC-CccEEEEEeCCCchhHHhhhhcccCCceEEEEec----CCCHHhhhCCCCEEE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG----QQQLEDALTGMDIVI  119 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g-~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~----t~d~~eal~~aDiVI  119 (289)
                      ++|||.|+||+|++|++++..|+..| .  +|+++|++..... ..+..   ...+..+.+    .+++.++++++|+||
T Consensus        31 ~~~~ilVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~-~~l~~---~~~v~~~~~Dl~d~~~l~~~~~~~d~Vi  104 (377)
T 2q1s_A           31 ANTNVMVVGGAGFVGSNLVKRLLELGVN--QVHVVDNLLSAEK-INVPD---HPAVRFSETSITDDALLASLQDEYDYVF  104 (377)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCS--EEEEECCCTTCCG-GGSCC---CTTEEEECSCTTCHHHHHHCCSCCSEEE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCc--eEEEEECCCCCch-hhccC---CCceEEEECCCCCHHHHHHHhhCCCEEE
Confidence            45799999999999999999999988 7  9999998652111 11110   122332211    123556778999999


Q ss_pred             EcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCCCcccHHHHHHHHH--HhC---CC-CCCcEEE
Q 022947          120 IPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNSTVPIAAEVFK--KVG---TY-DPKRLLG  190 (289)
Q Consensus       120 itag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~-~p~aiviv~tNPvd~~t~~~~~~~~--~~~---~~-~~~kviG  190 (289)
                      ++||.....  ..+..+.+..|+.....+++.+++. ... .++++|... +.-.--...+.  +..   .. ++...+|
T Consensus       105 h~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~-~~V~~SS~~-vyg~~~~~~~~~~E~~~~~~~~~~~~~Y~  182 (377)
T 2q1s_A          105 HLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLK-KVVYSAAGC-SIAEKTFDDAKATEETDIVSLHNNDSPYS  182 (377)
T ss_dssp             ECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCC-EEEEEEEC---------------CCCCCCCSSCCCSHHH
T ss_pred             ECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCC-eEEEeCCHH-HcCCCCCCCcCcccccccccccCCCCchH
Confidence            999864211  0123456778999999999998876 433 344444321 10000000000  100   11 2233344


Q ss_pred             eeeccHHHHHHHHHHHcCCCCccee-eeEEcccC
Q 022947          191 VTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (289)
Q Consensus       191 ~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg  223 (289)
                      .+.....++...+++..|++..-++ ..|+|...
T Consensus       183 ~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~  216 (377)
T 2q1s_A          183 MSKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGE  216 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTC
T ss_pred             HHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCC
Confidence            4545555555666677788888887 56888754

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=98.35  E-value=3.2e-06  Score=81.56  Aligned_cols=116  Identities=13%  Similarity=0.060  Sum_probs=78.0

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhC---CCccEEEEEeCCCchhH-Hhhhhccc--------------CCceEEEEecC
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKIN---PLVSVLHLYDVVNTPGV-TADISHMD--------------TNAVVRGFLGQ  105 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~---g~~~eI~LvD~~~~~g~-~~DL~~~~--------------~~~~v~~~~~t  105 (289)
                      .++++|.|+||+|++|+.++..|+..   |.  +|+++++++.... ...+.+..              ....+..+.+.
T Consensus        71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~--~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~D  148 (478)
T 4dqv_A           71 PELRTVLLTGATGFLGRYLVLELLRRLDVDG--RLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGD  148 (478)
T ss_dssp             SCCCEEEEECTTSHHHHHHHHHHHHHSCTTC--EEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhcCCCCC--EEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeE
Confidence            34689999999999999999988887   55  9999998762111 11111110              01233333221


Q ss_pred             ----------CCHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          106 ----------QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       106 ----------~d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                                .++.+.++++|+||++||....  ....+.+..|+.....+++.+.+.....+|.+.|
T Consensus       149 l~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~--~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS  214 (478)
T 4dqv_A          149 KSEPDLGLDQPMWRRLAETVDLIVDSAAMVNA--FPYHELFGPNVAGTAELIRIALTTKLKPFTYVST  214 (478)
T ss_dssp             TTSGGGGCCHHHHHHHHHHCCEEEECCSSCSB--SSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEE
T ss_pred             CCCcccCCCHHHHHHHHcCCCEEEECccccCC--cCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEee
Confidence                      1345667899999999987533  3334567889999999999998876656665555

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=98.35  E-value=3.8e-06  Score=75.46  Aligned_cols=144  Identities=15%  Similarity=0.189  Sum_probs=68.8

Q ss_pred             hcCCCccccccccccccccccccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccC
Q 022947           18 HLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT   95 (289)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~   95 (289)
                      |+|||-..-.....+|+++........+.+++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++.... 
T Consensus         5 ~~~~~~~~~~~~~l~~~~~~~~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~-   81 (281)
T 4dry_A            5 HHHSSGVDLGTENLYFQSMMAQGKGSGEGRIALVTGGGTGVGRGIAQALSAEGY--SVVITGRRPDVLDAAAGEIGGRT-   81 (281)
T ss_dssp             -----------------------------CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-
T ss_pred             cccccccccccceEEEeccccccCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC-
Confidence            678888888888899988765554444567899999999999999999999997  8999999862  22222332211 


Q ss_pred             CceEEEEe-cCCC---HHhh-------hCCCCEEEEcCCCCCCCC----Cc---hhhHHHhhHHH----HHHHHHHHHHh
Q 022947           96 NAVVRGFL-GQQQ---LEDA-------LTGMDIVIIPAGVPRKPG----MT---RDDLFNINAGI----VKTLCEGIAKC  153 (289)
Q Consensus        96 ~~~v~~~~-~t~d---~~ea-------l~~aDiVIitag~~~~~g----~~---r~d~~~~N~~i----~~~i~~~i~~~  153 (289)
                      ...+..+. +-+|   .++.       +...|++|.+||.....+    .+   -.+.+..|+..    .+.+.+.+.+.
T Consensus        82 ~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~  161 (281)
T 4dry_A           82 GNIVRAVVCDVGDPDQVAALFAAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQ  161 (281)
T ss_dssp             SSCEEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHS
T ss_pred             CCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence            11111111 1112   2222       246799999999753211    11   22345566554    55566666655


Q ss_pred             C-CCcEEEEecC
Q 022947          154 C-PKAIVNLISN  164 (289)
Q Consensus       154 ~-p~aiviv~tN  164 (289)
                      . ..+.|+++|.
T Consensus       162 ~~~~g~IV~isS  173 (281)
T 4dry_A          162 TPRGGRIINNGS  173 (281)
T ss_dssp             SSCCEEEEEECC
T ss_pred             CCCCcEEEEECC
Confidence            4 3577777765

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=98.35  E-value=3.2e-07  Score=84.98  Aligned_cols=137  Identities=18%  Similarity=0.146  Sum_probs=89.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~~  126 (289)
                      |||.|+||+|++|++++..|+..|.. +|+.+|++         .            ...++.++++++|+||++||...
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~-~v~~~d~~---------~------------d~~~l~~~~~~~d~Vih~a~~~~   58 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDH-HIFEVHRQ---------T------------KEEELESALLKADFIVHLAGVNR   58 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCC-EEEECCTT---------C------------CHHHHHHHHHHCSEEEECCCSBC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCC-EEEEECCC---------C------------CHHHHHHHhccCCEEEECCcCCC
Confidence            69999999999999999999888752 78888763         0            01235567889999999998654


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHH
Q 022947          127 KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEV  206 (289)
Q Consensus       127 ~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t~lds~R~~~~lA~~  206 (289)
                      ..  ...+....|+...+.+++.+++......++.+|.-.-               ++ ...+|.+.....++...+++.
T Consensus        59 ~~--~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~Ss~~~---------------~~-~~~Y~~sK~~~E~~~~~~~~~  120 (369)
T 3st7_A           59 PE--HDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQA---------------TQ-DNPYGESKLQGEQLLREYAEE  120 (369)
T ss_dssp             TT--CSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEEEGGG---------------GS-CSHHHHHHHHHHHHHHHHHHH
T ss_pred             CC--CHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCchhh---------------cC-CCCchHHHHHHHHHHHHHHHH
Confidence            22  2334556788889999999988775545555442110               00 111222333344445555666


Q ss_pred             cCCCCccee-eeEEcccC
Q 022947          207 LGLDPREVD-VPVVGGHA  223 (289)
Q Consensus       207 l~v~~~~V~-~~V~G~hg  223 (289)
                      .+++..-++ ..++|...
T Consensus       121 ~g~~~~i~R~~~v~G~~~  138 (369)
T 3st7_A          121 YGNTVYIYRWPNLFGKWC  138 (369)
T ss_dssp             HCCCEEEEEECEEECTTC
T ss_pred             hCCCEEEEECCceeCCCC
Confidence            777766666 45777654

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=98.34  E-value=1.4e-06  Score=73.10  Aligned_cols=103  Identities=12%  Similarity=0.091  Sum_probs=69.1

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEe----cCCCHHhhhCCCCEEEEcC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL----GQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~----~t~d~~eal~~aDiVIita  122 (289)
                      |||.|+||+|++|+.++..|+..|.  +|+++++++...  .++..    ..+..+.    ..+++.++++++|+||+++
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~--~V~~~~r~~~~~--~~~~~----~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a   75 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGY--EVTVLVRDSSRL--PSEGP----RPAHVVVGDVLQAADVDKTVAGQDAVIVLL   75 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCGGGS--CSSSC----CCSEEEESCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC--eEEEEEeChhhc--ccccC----CceEEEEecCCCHHHHHHHHcCCCEEEECc
Confidence            6999999999999999999999987  999999875211  01101    1122111    1124567789999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      |......     ....|+.....+++.+++.... .++++|
T Consensus        76 ~~~~~~~-----~~~~n~~~~~~~~~~~~~~~~~-~~v~~S  110 (206)
T 1hdo_A           76 GTRNDLS-----PTTVMSEGARNIVAAMKAHGVD-KVVACT  110 (206)
T ss_dssp             CCTTCCS-----CCCHHHHHHHHHHHHHHHHTCC-EEEEEC
T ss_pred             cCCCCCC-----ccchHHHHHHHHHHHHHHhCCC-eEEEEe
Confidence            8653211     1235788888888888887544 344444

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=98.34  E-value=8.4e-07  Score=82.60  Aligned_cols=176  Identities=11%  Similarity=0.071  Sum_probs=96.7

Q ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchh------------------HHhhhhcccCCceEEEEec
Q 022947           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG------------------VTADISHMDTNAVVRGFLG  104 (289)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g------------------~~~DL~~~~~~~~v~~~~~  104 (289)
                      +.++++|.|+||+|++|++++..|+..|.  +|+++|+.....                  ...++.... ...+..+.+
T Consensus         8 ~~~~~~vlVTG~tGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~~~   84 (404)
T 1i24_A            8 HHHGSRVMVIGGDGYCGWATALHLSKKNY--EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT-GKSIELYVG   84 (404)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHH-CCCCEEEES
T ss_pred             ccCCCeEEEeCCCcHHHHHHHHHHHhCCC--eEEEEEecCccccccccccccccccchhhhhhhhHhhcc-CCceEEEEC
Confidence            34577999999999999999999999997  999999753110                  111111000 112222211


Q ss_pred             ----CCCHHhhhCC--CCEEEEcCCCCCCC--CCch---hhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHH
Q 022947          105 ----QQQLEDALTG--MDIVIIPAGVPRKP--GMTR---DDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIA  173 (289)
Q Consensus       105 ----t~d~~eal~~--aDiVIitag~~~~~--g~~r---~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~  173 (289)
                          ..++.+++++  +|+||++||.....  ..+.   ...+..|+.....+++.+.+......++++|.. .+.... 
T Consensus        85 Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~SS~-~vyg~~-  162 (404)
T 1i24_A           85 DICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTM-GEYGTP-  162 (404)
T ss_dssp             CTTSHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCG-GGGCCC-
T ss_pred             CCCCHHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCcH-HHhCCC-
Confidence                1234455676  99999999864211  0111   135678999999999999887653355555432 110000 


Q ss_pred             HHHHHHh--------------CCCCCCcEEEeeeccHHHHHHHHHHHcCCCCccee-eeEEcccC
Q 022947          174 AEVFKKV--------------GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (289)
Q Consensus       174 ~~~~~~~--------------~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg  223 (289)
                      ...+.+.              ...++...+|.+.....++-..+++.+|++..-++ +.|+|...
T Consensus       163 ~~~~~E~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ivrp~~v~Gp~~  227 (404)
T 1i24_A          163 NIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKT  227 (404)
T ss_dssp             SSCBCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCC
T ss_pred             CCCCCccccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHhcCCeEEEEecceeeCCCC
Confidence            0000000              01112223333444344454556666788877777 56888753

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=98.33  E-value=9.8e-07  Score=83.59  Aligned_cols=132  Identities=18%  Similarity=0.293  Sum_probs=68.0

Q ss_pred             cchhhhHHHHHhhcCCCccccccccccccccccccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCC------ccEEEEEe
Q 022947            6 SGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPL------VSVLHLYD   79 (289)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~------~~eI~LvD   79 (289)
                      |++++|+.+.+.|+-++.-+-.        ..+.++-..++.||+|||| |.-|+++|..|+.+++      ..+|.|+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~p~KI~ViGa-GsWGTALA~~la~ng~~~~~~~~~~V~lw~   72 (391)
T 4fgw_A            2 SAAADRLNLTSGHLNAGRKRSS--------SSVSLKAAEKPFKVTVIGS-GNWGTTIAKVVAENCKGYPEVFAPIVQMWV   72 (391)
T ss_dssp             ---------------------------------------CCEEEEEECC-SHHHHHHHHHHHHHHHHCTTTEEEEEEEEC
T ss_pred             cchhhHHHHHhhhhcccccccc--------ccccccccCCCCeEEEECc-CHHHHHHHHHHHHcCCCccccCCceEEEEE
Confidence            6788999999999877655432        3445555566789999998 9999999999987652      13688887


Q ss_pred             CCCc---hhHHhhhh--ccc--------CCceEEEEecCCCHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHH
Q 022947           80 VVNT---PGVTADIS--HMD--------TNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTL  146 (289)
Q Consensus        80 ~~~~---~g~~~DL~--~~~--------~~~~v~~~~~t~d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i  146 (289)
                      +++.   +..+..+.  |..        ...++..   ++|+.+++++||+||++.  |              ...++++
T Consensus        73 r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~---t~dl~~al~~ad~ii~av--P--------------s~~~r~~  133 (391)
T 4fgw_A           73 FEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVA---NPDLIDSVKDVDIIVFNI--P--------------HQFLPRI  133 (391)
T ss_dssp             CCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEE---ESCHHHHHTTCSEEEECS--C--------------GGGHHHH
T ss_pred             cchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEE---eCCHHHHHhcCCEEEEEC--C--------------hhhhHHH
Confidence            7651   11122222  211        1234553   568999999999999974  2              2346777


Q ss_pred             HHHHHHhC-CCcEEEEecCC
Q 022947          147 CEGIAKCC-PKAIVNLISNP  165 (289)
Q Consensus       147 ~~~i~~~~-p~aiviv~tNP  165 (289)
                      +++++.+- ++..++.++-=
T Consensus       134 l~~l~~~~~~~~~iv~~~KG  153 (391)
T 4fgw_A          134 CSQLKGHVDSHVRAISCLKG  153 (391)
T ss_dssp             HHHHTTTSCTTCEEEECCCS
T ss_pred             HHHhccccCCCceeEEeccc
Confidence            78887765 56667666543

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=98.33  E-value=4.5e-06  Score=80.36  Aligned_cols=110  Identities=15%  Similarity=0.160  Sum_probs=74.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhccc----------------CCceEEEEecCCCHH
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----------------TNAVVRGFLGQQQLE  109 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~----------------~~~~v~~~~~t~d~~  109 (289)
                      ..+|+|||+ |+||..+|..|+..|+  +|+++|+++.+-.  .|....                ....++.   ++|+.
T Consensus         8 ~~~~~vIGl-G~vG~~~A~~La~~G~--~V~~~D~~~~kv~--~l~~g~~~~~epgl~~~~~~~~~~g~l~~---ttd~~   79 (446)
T 4a7p_A            8 SVRIAMIGT-GYVGLVSGACFSDFGH--EVVCVDKDARKIE--LLHQNVMPIYEPGLDALVASNVKAGRLSF---TTDLA   79 (446)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCSTTHH--HHTTTCCSSCCTTHHHHHHHHHHTTCEEE---ESCHH
T ss_pred             ceEEEEEcC-CHHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHhcCCCCccCCCHHHHHHhhcccCCEEE---ECCHH
Confidence            348999998 9999999999999998  9999999873211  111110                0123443   46888


Q ss_pred             hhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEe-cCCCcc
Q 022947          110 DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLI-SNPVNS  168 (289)
Q Consensus       110 eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~-tNPvd~  168 (289)
                      +++++||+||++.+.|...+..     ..++..++++++.+.++. |..+|+.. |-|.+.
T Consensus        80 ea~~~aDvvii~Vptp~~~~~~-----~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt  135 (446)
T 4a7p_A           80 EGVKDADAVFIAVGTPSRRGDG-----HADLSYVFAAAREIAENLTKPSVIVTKSTVPVGT  135 (446)
T ss_dssp             HHHTTCSEEEECCCCCBCTTTC-----CBCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTH
T ss_pred             HHHhcCCEEEEEcCCCCccccC-----CccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchH
Confidence            8999999999999888643111     124566777777777765 55555544 344444

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=98.32  E-value=2.1e-06  Score=82.90  Aligned_cols=126  Identities=17%  Similarity=0.197  Sum_probs=77.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhC--CCccEEEEEeCCCchhHHh-------------hhhcccCCceEEEEecCCCHHh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTA-------------DISHMDTNAVVRGFLGQQQLED  110 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~--g~~~eI~LvD~~~~~g~~~-------------DL~~~~~~~~v~~~~~t~d~~e  110 (289)
                      +|||+|||+ |+||..++..|+..  |+  +|+++|+++.....+             ++........+..   ++++.+
T Consensus         5 ~mkI~VIG~-G~mG~~lA~~La~~g~G~--~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~---t~~~~e   78 (467)
T 2q3e_A            5 IKKICCIGA-GYVGGPTCSVIAHMCPEI--RVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFF---STNIDD   78 (467)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHHCTTS--EEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEE---ESCHHH
T ss_pred             ccEEEEECC-CHHHHHHHHHHHhcCCCC--EEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEE---ECCHHH
Confidence            579999998 99999999999887  56  999999976211111             0110000012332   357778


Q ss_pred             hhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEe-cCCCcccHHHHHHHHHH
Q 022947          111 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLI-SNPVNSTVPIAAEVFKK  179 (289)
Q Consensus       111 al~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~-tNPvd~~t~~~~~~~~~  179 (289)
                      ++++||+||++.+.|........+ -..++..+.+.++.+.++. |+.+|+.. |+|....-. +.+.+.+
T Consensus        79 ~~~~aDvViiaVptp~~~~~v~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~-l~~~l~~  147 (467)
T 2q3e_A           79 AIKEADLVFISVNTPTKTYGMGKG-RAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAES-IRRIFDA  147 (467)
T ss_dssp             HHHHCSEEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHH-HHHHHHH
T ss_pred             HHhcCCEEEEEcCCchhhcccccc-CCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHH-HHHHHHH
Confidence            899999999998776543211000 0234566777778887765 55565554 677766332 2344443

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=98.31  E-value=1.9e-06  Score=78.53  Aligned_cols=113  Identities=17%  Similarity=0.103  Sum_probs=74.4

Q ss_pred             CCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch-hH-HhhhhcccCCceEEEEec----CCCHHhhhC-
Q 022947           41 KGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GV-TADISHMDTNAVVRGFLG----QQQLEDALT-  113 (289)
Q Consensus        41 ~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~-g~-~~DL~~~~~~~~v~~~~~----t~d~~eal~-  113 (289)
                      +...+.|+|.|+||+|++|++++..|+..|.  +|+++|++... .. ..++      ..+..+.+    ..++.++++ 
T Consensus        15 ~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~l------~~v~~~~~Dl~d~~~~~~~~~~   86 (330)
T 2pzm_A           15 VPRGSHMRILITGGAGCLGSNLIEHWLPQGH--EILVIDNFATGKREVLPPV------AGLSVIEGSVTDAGLLERAFDS   86 (330)
T ss_dssp             CSTTTCCEEEEETTTSHHHHHHHHHHGGGTC--EEEEEECCSSSCGGGSCSC------TTEEEEECCTTCHHHHHHHHHH
T ss_pred             cccCCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCccchhhhhcc------CCceEEEeeCCCHHHHHHHHhh
Confidence            3344557999999999999999999999887  99999986521 11 0111      12222111    123456677 


Q ss_pred             -CCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          114 -GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       114 -~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                       ++|+||++||..........+ +..|+.....+++.+.+.... .++++|
T Consensus        87 ~~~D~vih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~~~~-~iV~~S  135 (330)
T 2pzm_A           87 FKPTHVVHSAAAYKDPDDWAED-AATNVQGSINVAKAASKAGVK-RLLNFQ  135 (330)
T ss_dssp             HCCSEEEECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHHTCS-EEEEEE
T ss_pred             cCCCEEEECCccCCCccccChh-HHHHHHHHHHHHHHHHHcCCC-EEEEec
Confidence             999999999865332122233 678999999999998877543 444444

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=98.29  E-value=1.7e-06  Score=77.88  Aligned_cols=162  Identities=16%  Similarity=0.083  Sum_probs=94.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEE-EEecCCCHHhhhC--CCCEEEEcCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLEDALT--GMDIVIIPAG  123 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~-~~~~t~d~~eal~--~aDiVIitag  123 (289)
                      |||.|+||+|++|++++..|+..|.  +|+++|+.... ....+.. .. ..+. .+....++.++++  ++|+||++|+
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~-~~~~~~~-~~-~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~   75 (311)
T 2p5y_A            1 MRVLVTGGAGFIGSHIVEDLLARGL--EVAVLDNLATG-KRENVPK-GV-PFFRVDLRDKEGVERAFREFRPTHVSHQAA   75 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEECCCSSC-CGGGSCT-TC-CEECCCTTCHHHHHHHHHHHCCSEEEECCS
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCC--EEEEEECCCcC-chhhccc-Ce-EEEECCCCCHHHHHHHHHhcCCCEEEECcc
Confidence            5899999999999999999999997  99999874411 1011110 00 0010 0111123445666  8999999998


Q ss_pred             CCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCC--------Cc-ccHHHHHHHHHHhCCCCCCcEEEee
Q 022947          124 VPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP--------VN-STVPIAAEVFKKVGTYDPKRLLGVT  192 (289)
Q Consensus       124 ~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNP--------vd-~~t~~~~~~~~~~~~~~~~kviG~t  192 (289)
                      .....  ..+....+..|+.....+++.+.+..... ++++|..        .+ .++        +....++...+|.+
T Consensus        76 ~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~-iv~~SS~~~~~g~~~~~~~~~--------E~~~~~~~~~Y~~s  146 (311)
T 2p5y_A           76 QASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEK-LVFASTGGAIYGEVPEGERAE--------ETWPPRPKSPYAAS  146 (311)
T ss_dssp             CCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSE-EEEEEEHHHHHCCCCTTCCBC--------TTSCCCCCSHHHHH
T ss_pred             ccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCE-EEEeCCChhhcCCCCCCCCcC--------CCCCCCCCChHHHH
Confidence            64211  01234567789999999999988765444 4444321        00 000        00011223334444


Q ss_pred             eccHHHHHHHHHHHcCCCCccee-eeEEccc
Q 022947          193 MLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (289)
Q Consensus       193 ~lds~R~~~~lA~~l~v~~~~V~-~~V~G~h  222 (289)
                      .....++...+++..|++..-++ ..|+|..
T Consensus       147 K~~~e~~~~~~~~~~~~~~~~lrp~~v~Gp~  177 (311)
T 2p5y_A          147 KAAFEHYLSVYGQSYGLKWVSLRYGNVYGPR  177 (311)
T ss_dssp             HHHHHHHHHHHHHHHCCCEEEEEECEEECTT
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeeccccCcC
Confidence            44445555556677788777777 5588864

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=98.29  E-value=2e-06  Score=73.79  Aligned_cols=95  Identities=18%  Similarity=0.263  Sum_probs=63.3

Q ss_pred             EEEEEcCCCccHHHHHHHHH-hCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEe----cCCCHHhhhCCCCEEEEcC
Q 022947           48 KVAVLGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL----GQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~-~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~----~t~d~~eal~~aDiVIita  122 (289)
                      +|.|+||+|++|+.++..|+ ..|.  +|+++++++.. ...++...  ...+..+.    ...++.++++++|+||.++
T Consensus         7 ~vlVtGasg~iG~~~~~~l~~~~g~--~V~~~~r~~~~-~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~a   81 (221)
T 3r6d_A            7 YITILGAAGQIAQXLTATLLTYTDM--HITLYGRQLKT-RIPPEIID--HERVTVIEGSFQNPGXLEQAVTNAEVVFVGA   81 (221)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCCC--EEEEEESSHHH-HSCHHHHT--STTEEEEECCTTCHHHHHHHHTTCSEEEESC
T ss_pred             EEEEEeCCcHHHHHHHHHHHhcCCc--eEEEEecCccc-cchhhccC--CCceEEEECCCCCHHHHHHHHcCCCEEEEcC
Confidence            49999999999999999999 7898  99999986420 21222101  11222221    1134567789999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEE
Q 022947          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL  161 (289)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv  161 (289)
                      |..             |+. .+.+++.+++.....+|.+
T Consensus        82 g~~-------------n~~-~~~~~~~~~~~~~~~iv~i  106 (221)
T 3r6d_A           82 MES-------------GSD-MASIVKALSRXNIRRVIGV  106 (221)
T ss_dssp             CCC-------------HHH-HHHHHHHHHHTTCCEEEEE
T ss_pred             CCC-------------Chh-HHHHHHHHHhcCCCeEEEE
Confidence            743             444 7888888887654444433

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=98.28  E-value=5.5e-06  Score=75.15  Aligned_cols=167  Identities=14%  Similarity=0.073  Sum_probs=95.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhC-CCccEEEEEeCCCchhHHhhhhcccCCceEEEEec--C---CCHHhhhCCCCEEEE
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG--Q---QQLEDALTGMDIVII  120 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~-g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~--t---~d~~eal~~aDiVIi  120 (289)
                      |||.|+||+|++|++++..|+.. |+  +|+++|++....  .++..   ...+..+.+  +   ..+.++++++|+||+
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~--~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~d~vih   73 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHY--EVYGLDIGSDAI--SRFLN---HPHFHFVEGDISIHSEWIEYHVKKCDVVLP   73 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTC--EEEEEESCCGGG--GGGTT---CTTEEEEECCTTTCSHHHHHHHHHCSEEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCC--EEEEEeCCcchH--HHhhc---CCCeEEEeccccCcHHHHHhhccCCCEEEE
Confidence            58999999999999999999887 77  899999876221  11111   112222211  1   124557789999999


Q ss_pred             cCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCC-------CCCcEEEe
Q 022947          121 PAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY-------DPKRLLGV  191 (289)
Q Consensus       121 tag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~-------~~~kviG~  191 (289)
                      +||.....  ..+..+.+..|+.....+++.+.+..  ..++++|... +.-..-...+.+....       ++...+|.
T Consensus        74 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~v~~SS~~-v~g~~~~~~~~e~~~~~~~~~~~~~~~~Y~~  150 (345)
T 2bll_A           74 LVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR--KRIIFPSTSE-VYGMCSDKYFDEDHSNLIVGPVNKPRWIYSV  150 (345)
T ss_dssp             CBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT--CEEEEECCGG-GGBTCCCSSBCTTTCCCBCCCTTCGGGHHHH
T ss_pred             cccccCccchhcCHHHHHHHHHHHHHHHHHHHHHhC--CeEEEEecHH-HcCCCCCCCcCCcccccccCcccCcccccHH
Confidence            99864311  11234566788888889998888765  4555555421 1000000000000000       01113344


Q ss_pred             eeccHHHHHHHHHHHcCCCCccee-eeEEcccC
Q 022947          192 TMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (289)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg  223 (289)
                      +.....++...+++..|++..-++ ..|+|...
T Consensus       151 sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~  183 (345)
T 2bll_A          151 SKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRL  183 (345)
T ss_dssp             HHHHHHHHHHHHHHHHCCCEEEEEECSEECSSC
T ss_pred             HHHHHHHHHHHHHHhcCCCEEEEcCCcccCCCc
Confidence            444444555556666788877777 55888753

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=98.28  E-value=1.8e-06  Score=74.71  Aligned_cols=113  Identities=19%  Similarity=0.148  Sum_probs=73.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEE-EEecCCCHHhhhCCCCEEEEcCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~-~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      .++|.|+||+|++|+.++..|+..|...+|+++|+++...........   ..+. .+....++.++++++|+||+++|.
T Consensus        18 ~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~---~~~~~D~~d~~~~~~~~~~~d~vi~~ag~   94 (242)
T 2bka_A           18 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNV---NQEVVDFEKLDDYASAFQGHDVGFCCLGT   94 (242)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGC---EEEECCGGGGGGGGGGGSSCSEEEECCCC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCc---eEEecCcCCHHHHHHHhcCCCEEEECCCc
Confidence            468999999999999999999998865589999987621110000000   0000 011223456778899999999986


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      ... .....+++..|+.....+++.+.+.... .++++|
T Consensus        95 ~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~iv~~S  131 (242)
T 2bka_A           95 TRG-KAGAEGFVRVDRDYVLKSAELAKAGGCK-HFNLLS  131 (242)
T ss_dssp             CHH-HHHHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEC
T ss_pred             ccc-cCCcccceeeeHHHHHHHHHHHHHCCCC-EEEEEc
Confidence            421 1123456777888889999988876544 444444

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=98.28  E-value=2.5e-06  Score=79.34  Aligned_cols=173  Identities=17%  Similarity=0.102  Sum_probs=97.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHH-hCCCccEEEEEeCCCch----------hHHhh-hhcccC---Cce---EEEEec-CC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTP----------GVTAD-ISHMDT---NAV---VRGFLG-QQ  106 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~-~~g~~~eI~LvD~~~~~----------g~~~D-L~~~~~---~~~---v~~~~~-t~  106 (289)
                      .|||.|+||+|++|++++..|+ ..|.  +|+++|++...          ....+ +.....   ...   +..+.. -.
T Consensus         2 ~m~vlVTGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~   79 (397)
T 1gy8_A            2 HMRVLVCGGAGYIGSHFVRALLRDTNH--SVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVR   79 (397)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCC--EEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHhCCC--EEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCC
Confidence            3699999999999999999999 8887  99999986521          11111 111100   001   222211 11


Q ss_pred             ---CHHhhhC--C-CCEEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHH----H
Q 022947          107 ---QLEDALT--G-MDIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIA----A  174 (289)
Q Consensus       107 ---d~~eal~--~-aDiVIitag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~----~  174 (289)
                         ++.++++  + +|+||++||.....  ..+..+++..|+.....+++.+.+.....+|.+.|  ..+....-    .
T Consensus        80 d~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~iv~~SS--~~v~g~~~~~~~~  157 (397)
T 1gy8_A           80 NEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSS--AAIFGNPTMGSVS  157 (397)
T ss_dssp             CHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEE--GGGTBSCCC----
T ss_pred             CHHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCCEEEEECC--HHHhCCCCccccc
Confidence               2345565  6 99999999865321  11234577889999999999988765444444333  11100000    0


Q ss_pred             ---HHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHcCCCCccee-eeEEccc
Q 022947          175 ---EVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (289)
Q Consensus       175 ---~~~~~~~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~h  222 (289)
                         ..+.+.....+...++.+.....++-..+++.++++..-++ ..|+|.+
T Consensus       158 ~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilRp~~v~G~~  209 (397)
T 1gy8_A          158 TNAEPIDINAKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAH  209 (397)
T ss_dssp             -CCCCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCC
T ss_pred             ccccCcCccCCCCCCCchHHHHHHHHHHHHHHHHHHCCcEEEEeccceeCCC
Confidence               00000000112233344444455566666777788777777 5688875

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=98.27  E-value=3.1e-06  Score=75.35  Aligned_cols=158  Identities=15%  Similarity=0.111  Sum_probs=90.5

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCC--CCEEEEc
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTG--MDIVIIP  121 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~--aDiVIit  121 (289)
                      .++|||.|+||+|++|++++..|+..|.........   ......|+.+.            .++.+++++  +|+||++
T Consensus         4 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~~~---~~~~~~D~~d~------------~~~~~~~~~~~~d~Vih~   68 (319)
T 4b8w_A            4 FQSMRILVTGGSGLVGKAIQKVVADGAGLPGEDWVF---VSSKDADLTDT------------AQTRALFEKVQPTHVIHL   68 (319)
T ss_dssp             CCCCEEEEETCSSHHHHHHHHHHHTTTCCTTCEEEE---CCTTTCCTTSH------------HHHHHHHHHSCCSEEEEC
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHhcCCcccccccc---cCceecccCCH------------HHHHHHHhhcCCCEEEEC
Confidence            457899999999999999999999888510000000   01111222221            234566666  9999999


Q ss_pred             CCCCCC---CCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC---------CCcccHHHHHHHHHHhCCCCCCc-E
Q 022947          122 AGVPRK---PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN---------PVNSTVPIAAEVFKKVGTYDPKR-L  188 (289)
Q Consensus       122 ag~~~~---~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN---------Pvd~~t~~~~~~~~~~~~~~~~k-v  188 (289)
                      |+....   ......+.+..|+.....+++.+++....-+|.+.|-         |.+--.       .......+.. .
T Consensus        69 A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~-------~~~~~~~p~~~~  141 (319)
T 4b8w_A           69 AAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGARKVVSCLSTCIFPDKTTYPIDETM-------IHNGPPHNSNFG  141 (319)
T ss_dssp             CCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGSCSSCCSSBCGGG-------GGBSCCCSSSHH
T ss_pred             ceecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcchhhcCCCCCCCccccc-------cccCCCCCCcch
Confidence            987431   1123456788999999999999988765544433332         111000       0000111111 2


Q ss_pred             EEeeeccHHHHHHHHHHHcCCCCccee-eeEEcccC
Q 022947          189 LGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (289)
Q Consensus       189 iG~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg  223 (289)
                      +|.+.+...++...+++..+++..-++ ..|+|...
T Consensus       142 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~Gp~~  177 (319)
T 4b8w_A          142 YSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHD  177 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTC
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCEEEEeeccccCCCC
Confidence            344444444555556667787777776 56888654

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=98.25  E-value=1.4e-06  Score=76.93  Aligned_cols=105  Identities=23%  Similarity=0.194  Sum_probs=72.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEE----ecCCCHHhhhCCCCEEEEc
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGF----LGQQQLEDALTGMDIVIIP  121 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~----~~t~d~~eal~~aDiVIit  121 (289)
                      ++||.|+||+|++|++++..|+..|.  +|+++|++.....    .     ..+..+    ....++.++++++|+||++
T Consensus         2 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~----~-----~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   70 (267)
T 3ay3_A            2 LNRLLVTGAAGGVGSAIRPHLGTLAH--EVRLSDIVDLGAA----E-----AHEEIVACDLADAQAVHDLVKDCDGIIHL   70 (267)
T ss_dssp             EEEEEEESTTSHHHHHHGGGGGGTEE--EEEECCSSCCCCC----C-----TTEEECCCCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CceEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCCCcccc----C-----CCccEEEccCCCHHHHHHHHcCCCEEEEC
Confidence            35899999999999999999988886  8999998762110    0     011111    1112355778999999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      ||...  .....+.+..|+.....+++.+.+....-+|.+.|
T Consensus        71 a~~~~--~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS  110 (267)
T 3ay3_A           71 GGVSV--ERPWNDILQANIIGAYNLYEAARNLGKPRIVFASS  110 (267)
T ss_dssp             CSCCS--CCCHHHHHHHTHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             CcCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence            98652  23345667889999999999988765444444433

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=98.25  E-value=2.2e-06  Score=77.20  Aligned_cols=104  Identities=14%  Similarity=0.121  Sum_probs=58.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCC--CCEEEEcCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTG--MDIVIIPAG  123 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~--aDiVIitag  123 (289)
                      .|||.|+||+|++|++++..|+..|+  +|+++|++....   ....    ..+.   ...++.+++++  +|+||++||
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~---~~~~----~Dl~---d~~~~~~~~~~~~~d~vih~A~   69 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNW--HAVGCGFRRARP---KFEQ----VNLL---DSNAVHHIIHDFQPHVIVHCAA   69 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEC----------------------------CHHHHHHHCCSEEEECC-
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCC--eEEEEccCCCCC---CeEE----ecCC---CHHHHHHHHHhhCCCEEEECCc
Confidence            46899999999999999999999987  999998754221   0010    1111   11234566664  899999998


Q ss_pred             CCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          124 VPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       124 ~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      .....  ..+..+.+..|+.....+++.+.+...  .++++|
T Consensus        70 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  109 (315)
T 2ydy_A           70 ERRPDVVENQPDAASQLNVDASGNLAKEAAAVGA--FLIYIS  109 (315)
T ss_dssp             ------------------CHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             ccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence            64321  123345677899999999999888754  555554

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=98.23  E-value=9e-06  Score=73.13  Aligned_cols=116  Identities=18%  Similarity=0.258  Sum_probs=70.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccC----Cc-----eEEEEecCCCHHhhhCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT----NA-----VVRGFLGQQQLEDALTGM  115 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~----~~-----~v~~~~~t~d~~eal~~a  115 (289)
                      ++|||+|||+ |.+|+.++..|+..|+  +|.++|+++...  ..+.....    ..     .+.... ..+..++++++
T Consensus         2 ~~m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~r~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   75 (316)
T 2ew2_A            2 NAMKIAIAGA-GAMGSRLGIMLHQGGN--DVTLIDQWPAHI--EAIRKNGLIADFNGEEVVANLPIFS-PEEIDHQNEQV   75 (316)
T ss_dssp             --CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHH--HHHHHHCEEEEETTEEEEECCCEEC-GGGCCTTSCCC
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHhCCC--cEEEEECCHHHH--HHHHhCCEEEEeCCCeeEecceeec-chhhcccCCCC
Confidence            4579999998 9999999999999997  999999875211  11111100    00     111111 11222334599


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEE
Q 022947          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLL  189 (289)
Q Consensus       116 DiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kvi  189 (289)
                      |+||++...                ..+.++++.+..+. |+.+|+.++|..+..     +.+.+  .+++.+++
T Consensus        76 d~vi~~v~~----------------~~~~~v~~~l~~~l~~~~~iv~~~~g~~~~-----~~l~~--~~~~~~vi  127 (316)
T 2ew2_A           76 DLIIALTKA----------------QQLDAMFKAIQPMITEKTYVLCLLNGLGHE-----DVLEK--YVPKENIL  127 (316)
T ss_dssp             SEEEECSCH----------------HHHHHHHHHHGGGCCTTCEEEECCSSSCTH-----HHHTT--TSCGGGEE
T ss_pred             CEEEEEecc----------------ccHHHHHHHHHHhcCCCCEEEEecCCCCcH-----HHHHH--HcCCccEE
Confidence            999998521                12466677777765 688888888887642     22222  35556676

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=98.23  E-value=9.5e-06  Score=74.57  Aligned_cols=116  Identities=16%  Similarity=0.023  Sum_probs=70.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch---hHHhhhhccc--CCceEEEEec----CCCHHhhhCC--
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMD--TNAVVRGFLG----QQQLEDALTG--  114 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~---g~~~DL~~~~--~~~~v~~~~~----t~d~~eal~~--  114 (289)
                      +++|.|+||+|++|++++..|+..|.  +|+++|++...   ....++....  ....+..+.+    ..++.+++++  
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~   78 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLEKGY--EVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQ   78 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcC
Confidence            46899999999999999999999987  99999986521   1111111100  0112332211    1123445554  


Q ss_pred             CCEEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCC--cEEEEec
Q 022947          115 MDIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPK--AIVNLIS  163 (289)
Q Consensus       115 aDiVIitag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~--aiviv~t  163 (289)
                      .|+||++||.....  ..+....+..|+.....+++.+.+...+  ..++++|
T Consensus        79 ~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~S  131 (372)
T 1db3_A           79 PDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQAS  131 (372)
T ss_dssp             CSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEE
T ss_pred             CCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeC
Confidence            69999999864322  1223456678999999999998887642  4555554

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=98.23  E-value=2.8e-06  Score=77.45  Aligned_cols=111  Identities=16%  Similarity=0.050  Sum_probs=71.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEec----CCCHHhhhCC--CCEE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG----QQQLEDALTG--MDIV  118 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~----t~d~~eal~~--aDiV  118 (289)
                      ++|||.|+||+|++|++++..|+..|.  +|+++|++..... ..+...   ..+..+.+    ..++.+++++  +|+|
T Consensus        20 ~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~-~~l~~~---~~~~~~~~Dl~d~~~~~~~~~~~~~D~v   93 (333)
T 2q1w_A           20 HMKKVFITGICGQIGSHIAELLLERGD--KVVGIDNFATGRR-EHLKDH---PNLTFVEGSIADHALVNQLIGDLQPDAV   93 (333)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCG-GGSCCC---TTEEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEECCCccch-hhHhhc---CCceEEEEeCCCHHHHHHHHhccCCcEE
Confidence            357999999999999999999999987  9999998752110 111110   12222111    1234456777  9999


Q ss_pred             EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       119 Iitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      |++||..........+ +..|+.....+++.+.+.... .++++|
T Consensus        94 ih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~~~~-~iV~~S  136 (333)
T 2q1w_A           94 VHTAASYKDPDDWYND-TLTNCVGGSNVVQAAKKNNVG-RFVYFQ  136 (333)
T ss_dssp             EECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHTTCS-EEEEEE
T ss_pred             EECceecCCCccCChH-HHHHHHHHHHHHHHHHHhCCC-EEEEEC
Confidence            9999865332112223 778999999999998876543 444443

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=98.23  E-value=1.5e-06  Score=79.22  Aligned_cols=104  Identities=19%  Similarity=0.218  Sum_probs=69.2

Q ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhCC-------CccEEEEEeCCCchhHHhhhhcccCCceEEEEe----cCCCHHhh
Q 022947           43 GSPGFKVAVLGAAGGIGQPLAMLMKINP-------LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL----GQQQLEDA  111 (289)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~g-------~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~----~t~d~~ea  111 (289)
                      +.++|+|.|+||+|++|++++..|+..|       .  +|+++|++......  .    ....+..+.    ...++.++
T Consensus        11 ~~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~--~V~~~~r~~~~~~~--~----~~~~~~~~~~Dl~d~~~~~~~   82 (342)
T 2hrz_A           11 YFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVE--KFTLIDVFQPEAPA--G----FSGAVDARAADLSAPGEAEKL   82 (342)
T ss_dssp             CCSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEE--EEEEEESSCCCCCT--T----CCSEEEEEECCTTSTTHHHHH
T ss_pred             CccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCc--eEEEEEccCCcccc--c----cCCceeEEEcCCCCHHHHHHH
Confidence            3456799999999999999999998888       4  89999987521110  0    011222211    11234556


Q ss_pred             h-CCCCEEEEcCCCCCCC-CCchhhHHHhhHHHHHHHHHHHHHhC
Q 022947          112 L-TGMDIVIIPAGVPRKP-GMTRDDLFNINAGIVKTLCEGIAKCC  154 (289)
Q Consensus       112 l-~~aDiVIitag~~~~~-g~~r~d~~~~N~~i~~~i~~~i~~~~  154 (289)
                      + .++|+||++||..... ..+..+.+..|+.....+++.+.+..
T Consensus        83 ~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~  127 (342)
T 2hrz_A           83 VEARPDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIAN  127 (342)
T ss_dssp             HHTCCSEEEECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             HhcCCCEEEECCccCcccccccHHHHHHHHHHHHHHHHHHHHhcc
Confidence            6 4899999999865310 11234466789888888988888765

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=98.23  E-value=1.5e-06  Score=77.27  Aligned_cols=96  Identities=21%  Similarity=0.218  Sum_probs=70.8

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhC--CCCEEEEcCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVIIPAGV  124 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~--~aDiVIitag~  124 (289)
                      |||.|+||+|++|++++..|+..|+  +|+.+++.+     .|+.+.            .++.++++  ++|+||++||.
T Consensus         6 m~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~-----~D~~d~------------~~~~~~~~~~~~d~vi~~a~~   66 (287)
T 3sc6_A            6 ERVIITGANGQLGKQLQEELNPEEY--DIYPFDKKL-----LDITNI------------SQVQQVVQEIRPHIIIHCAAY   66 (287)
T ss_dssp             EEEEEESTTSHHHHHHHHHSCTTTE--EEEEECTTT-----SCTTCH------------HHHHHHHHHHCCSEEEECCCC
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCC--EEEEecccc-----cCCCCH------------HHHHHHHHhcCCCEEEECCcc
Confidence            5899999999999999999998887  999998733     233322            12445566  69999999986


Q ss_pred             CCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          125 PRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       125 ~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      ....  ..+..+.+..|+.....+++.+++...  .++++|
T Consensus        67 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~S  105 (287)
T 3sc6_A           67 TKVDQAEKERDLAYVINAIGARNVAVASQLVGA--KLVYIS  105 (287)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             cChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence            5321  134456778899999999999998865  344444

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=98.21  E-value=4.8e-06  Score=71.93  Aligned_cols=112  Identities=18%  Similarity=0.146  Sum_probs=72.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhC--CCccEEEEEeCCCchhHHhhhhcccCCceEEE-EecCCCHHhhhCCCCEEEEc
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIP  121 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~--g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~eal~~aDiVIit  121 (289)
                      ++++|.|+||+|++|++++..|+..  +.  +|+++++++..  ..++.. .. ..+.. +....++.++++++|+||++
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~--~V~~~~r~~~~--~~~~~~-~~-~~~~~D~~d~~~~~~~~~~~d~vi~~   76 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKF--VAKGLVRSAQG--KEKIGG-EA-DVFIGDITDADSINPAFQGIDALVIL   76 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTC--EEEEEESCHHH--HHHTTC-CT-TEEECCTTSHHHHHHHHTTCSEEEEC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCc--EEEEEEcCCCc--hhhcCC-Ce-eEEEecCCCHHHHHHHHcCCCEEEEe
Confidence            4579999999999999999999988  56  99999986521  112211 00 01110 11112466778999999999


Q ss_pred             CCCCCC------------CCCc---hhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          122 AGVPRK------------PGMT---RDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       122 ag~~~~------------~g~~---r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      +|....            +...   -.+.+..|+.....+++.+++.... .++++|
T Consensus        77 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~S  132 (253)
T 1xq6_A           77 TSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVK-HIVVVG  132 (253)
T ss_dssp             CCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCS-EEEEEE
T ss_pred             ccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCC-EEEEEc
Confidence            986421            1100   0134678888899999999887644 344444

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=98.21  E-value=2.3e-06  Score=79.01  Aligned_cols=113  Identities=17%  Similarity=0.221  Sum_probs=75.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhC-CCccEEEEEeCCCchh--HHhhhhcccCCceEEEEec----CCCHHhhhCCCCE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFLG----QQQLEDALTGMDI  117 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~-g~~~eI~LvD~~~~~g--~~~DL~~~~~~~~v~~~~~----t~d~~eal~~aDi  117 (289)
                      +.++|.|+||+|++|+.++..|+.. |. .+|+++++++...  ...++..    ..+..+.+    ..++.++++++|+
T Consensus        20 ~~k~vlVTGatG~iG~~l~~~L~~~~g~-~~V~~~~r~~~~~~~~~~~~~~----~~v~~~~~Dl~d~~~l~~~~~~~D~   94 (344)
T 2gn4_A           20 DNQTILITGGTGSFGKCFVRKVLDTTNA-KKIIVYSRDELKQSEMAMEFND----PRMRFFIGDVRDLERLNYALEGVDI   94 (344)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCCC-SEEEEEESCHHHHHHHHHHHCC----TTEEEEECCTTCHHHHHHHTTTCSE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhhCCC-CEEEEEECChhhHHHHHHHhcC----CCEEEEECCCCCHHHHHHHHhcCCE
Confidence            3469999999999999999988887 63 3899999875211  1112211    12222211    1235567899999


Q ss_pred             EEEcCCCCCCCC--CchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEe
Q 022947          118 VIIPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI  162 (289)
Q Consensus       118 VIitag~~~~~g--~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~  162 (289)
                      ||++||....+.  ....+.+..|+.....+++.+.+.....+|.+.
T Consensus        95 Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~S  141 (344)
T 2gn4_A           95 CIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALS  141 (344)
T ss_dssp             EEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             EEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEec
Confidence            999998653211  123467788999999999999887644444443

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=98.21  E-value=1.3e-06  Score=77.26  Aligned_cols=94  Identities=18%  Similarity=0.274  Sum_probs=67.3

Q ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhCCCc--cEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEE
Q 022947           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (289)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~g~~--~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIi  120 (289)
                      |+++|||+|||+ |.+|+.++..|...|..  .+|.++|+++..       .     .+..   .+++.++++++|+||+
T Consensus         1 ~m~~m~i~iiG~-G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~-------~-----g~~~---~~~~~~~~~~~D~vi~   64 (262)
T 2rcy_A            1 GMENIKLGFMGL-GQMGSALAHGIANANIIKKENLFYYGPSKKN-------T-----TLNY---MSSNEELARHCDIIVC   64 (262)
T ss_dssp             CCSSSCEEEECC-SHHHHHHHHHHHHHTSSCGGGEEEECSSCCS-------S-----SSEE---CSCHHHHHHHCSEEEE
T ss_pred             CCCCCEEEEECc-CHHHHHHHHHHHHCCCCCCCeEEEEeCCccc-------C-----ceEE---eCCHHHHHhcCCEEEE
Confidence            345689999998 99999999999887721  389999987632       1     1121   2356678899999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcc
Q 022947          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS  168 (289)
Q Consensus       121 tag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~  168 (289)
                      +.. +   .            .+.++++.+..+.++..++..+|.++.
T Consensus        65 ~v~-~---~------------~~~~v~~~l~~~l~~~~vv~~~~gi~~   96 (262)
T 2rcy_A           65 AVK-P---D------------IAGSVLNNIKPYLSSKLLISICGGLNI   96 (262)
T ss_dssp             CSC-T---T------------THHHHHHHSGGGCTTCEEEECCSSCCH
T ss_pred             EeC-H---H------------HHHHHHHHHHHhcCCCEEEEECCCCCH
Confidence            863 1   1            144555666666678888888888875

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=98.20  E-value=2.2e-06  Score=79.33  Aligned_cols=115  Identities=10%  Similarity=0.012  Sum_probs=71.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch---hHHhhhhccc---CCceEEEEec-C---CCHHhhhCC--
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMD---TNAVVRGFLG-Q---QQLEDALTG--  114 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~---g~~~DL~~~~---~~~~v~~~~~-t---~d~~eal~~--  114 (289)
                      ++|.|+||+|++|++++..|+..|.  +|+++|++...   ....++....   ....+..+.. -   .++.+++++  
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~  102 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGY--EVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVK  102 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHC
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhcC
Confidence            5899999999999999999999987  99999987521   1111121100   0112332211 1   123445554  


Q ss_pred             CCEEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCC--CcEEEEec
Q 022947          115 MDIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCP--KAIVNLIS  163 (289)
Q Consensus       115 aDiVIitag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p--~aiviv~t  163 (289)
                      .|+||++||.....  ..+..+.+..|+.....+++.+.+...  ...++++|
T Consensus       103 ~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~S  155 (375)
T 1t2a_A          103 PTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQAS  155 (375)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEE
T ss_pred             CCEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEec
Confidence            59999999864311  012345677899999999999888654  14555554

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=98.20  E-value=1.5e-06  Score=80.20  Aligned_cols=100  Identities=19%  Similarity=0.247  Sum_probs=65.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhccc-----CCceEEE-EecCCCHHhhhCCCCEE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-----TNAVVRG-FLGQQQLEDALTGMDIV  118 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~-----~~~~v~~-~~~t~d~~eal~~aDiV  118 (289)
                      ++|||+|||+ |.+|..++..|+..|+  +|.++|+++   ....+....     ....... +..++++ +++.++|+|
T Consensus         2 ~~mkI~IiGa-G~~G~~~a~~L~~~g~--~V~~~~r~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~D~V   74 (335)
T 3ghy_A            2 SLTRICIVGA-GAVGGYLGARLALAGE--AINVLARGA---TLQALQTAGLRLTEDGATHTLPVRATHDA-AALGEQDVV   74 (335)
T ss_dssp             CCCCEEEESC-CHHHHHHHHHHHHTTC--CEEEECCHH---HHHHHHHTCEEEEETTEEEEECCEEESCH-HHHCCCSEE
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEEEChH---HHHHHHHCCCEEecCCCeEEEeeeEECCH-HHcCCCCEE
Confidence            3579999998 9999999999999997  899999743   111111110     0000000 1113466 457999999


Q ss_pred             EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCc
Q 022947          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVN  167 (289)
Q Consensus       119 Iitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd  167 (289)
                      |++..                ...+.++++.++.+. |+.+|+.++|.++
T Consensus        75 ilavk----------------~~~~~~~~~~l~~~l~~~~~iv~~~nGi~  108 (335)
T 3ghy_A           75 IVAVK----------------APALESVAAGIAPLIGPGTCVVVAMNGVP  108 (335)
T ss_dssp             EECCC----------------HHHHHHHHGGGSSSCCTTCEEEECCSSSC
T ss_pred             EEeCC----------------chhHHHHHHHHHhhCCCCCEEEEECCCCc
Confidence            99852                123556667777654 7889998999953

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=98.19  E-value=6.6e-06  Score=74.00  Aligned_cols=112  Identities=11%  Similarity=-0.003  Sum_probs=69.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeC-CCc---h-hHHhhhhcccCCceEEEE----ecCCCHHhhhCCCCE
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV-VNT---P-GVTADISHMDTNAVVRGF----LGQQQLEDALTGMDI  117 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~-~~~---~-g~~~DL~~~~~~~~v~~~----~~t~d~~eal~~aDi  117 (289)
                      +||.|+||+|++|++++..|+..|+  +|+++++ +..   . ....++...  ...+..+    ....++.++++++|+
T Consensus         2 k~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~   77 (322)
T 2p4h_X            2 GRVCVTGGTGFLGSWIIKSLLENGY--SVNTTIRADPERKRDVSFLTNLPGA--SEKLHFFNADLSNPDSFAAAIEGCVG   77 (322)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEECCCC----CCCHHHHTSTTH--HHHEEECCCCTTCGGGGHHHHTTCSE
T ss_pred             CEEEEECChhHHHHHHHHHHHHCCC--EEEEEEeCCccchhHHHHHHhhhcc--CCceEEEecCCCCHHHHHHHHcCCCE
Confidence            5899999999999999999999997  8888876 431   1 111111100  0112211    112346678899999


Q ss_pred             EEEcCCCCCCCCCc-hhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEec
Q 022947          118 VIIPAGVPRKPGMT-RDDLFNINAGIVKTLCEGIAKC-CPKAIVNLIS  163 (289)
Q Consensus       118 VIitag~~~~~g~~-r~d~~~~N~~i~~~i~~~i~~~-~p~aiviv~t  163 (289)
                      ||++|+.......+ ..+++..|+.....+++.+.+. ... .++++|
T Consensus        78 vih~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~-~iV~~S  124 (322)
T 2p4h_X           78 IFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVK-RFIYTS  124 (322)
T ss_dssp             EEECCCCC--------CHHHHHHHHHHHHHHHHHTTCSSCC-EEEEEE
T ss_pred             EEEcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhcCCcc-EEEEec
Confidence            99999643111111 2347788999999999998876 333 444443

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=98.19  E-value=1.1e-06  Score=78.79  Aligned_cols=167  Identities=14%  Similarity=0.114  Sum_probs=94.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhC--CCccEEEEEeCCCchhHHhhhhcccCCceEEE-EecCCCHHhhhC--CCCEEEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALT--GMDIVII  120 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~--g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~eal~--~aDiVIi  120 (289)
                      +|||.|+||+|++|++++..|+..  |.  +|+++|++.....   +....  ..+.. +....++.++++  ++|+||+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~---~~~~~--~~~~~D~~d~~~~~~~~~~~~~d~vih   74 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTE--NVIASDIRKLNTD---VVNSG--PFEVVNALDFNQIEHLVEVHKITDIYL   74 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGG--GEEEEESCCCSCH---HHHSS--CEEECCTTCHHHHHHHHHHTTCCEEEE
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCC--EEEEEcCCCcccc---ccCCC--ceEEecCCCHHHHHHHHhhcCCCEEEE
Confidence            368999999999999999988887  66  8999998763211   11100  01110 111123455666  8999999


Q ss_pred             cCCCCCCC-CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHH-HHHHHhCCCCCCcEEEeeeccHHH
Q 022947          121 PAGVPRKP-GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAA-EVFKKVGTYDPKRLLGVTMLDVVR  198 (289)
Q Consensus       121 tag~~~~~-g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~-~~~~~~~~~~~~kviG~t~lds~R  198 (289)
                      +||..... ..+..+.+..|+.....+++.+.+.... .++++|... +...-.. ....+.....+...+|.+.+...+
T Consensus        75 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~~-~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~  152 (312)
T 2yy7_A           75 MAALLSATAEKNPAFAWDLNMNSLFHVLNLAKAKKIK-KIFWPSSIA-VFGPTTPKENTPQYTIMEPSTVYGISKQAGER  152 (312)
T ss_dssp             CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHTTSCS-EEECCEEGG-GCCTTSCSSSBCSSCBCCCCSHHHHHHHHHHH
T ss_pred             CCccCCCchhhChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccHH-HhCCCCCCCCccccCcCCCCchhHHHHHHHHH
Confidence            99864211 1223456788999999999998876543 444443221 1000000 000000001222333444444445


Q ss_pred             HHHHHHHHcCCCCccee-eeEEcc
Q 022947          199 ANTFVAEVLGLDPREVD-VPVVGG  221 (289)
Q Consensus       199 ~~~~lA~~l~v~~~~V~-~~V~G~  221 (289)
                      +-..+++..|++..-++ ..++|.
T Consensus       153 ~~~~~~~~~~~~~~~lrp~~v~g~  176 (312)
T 2yy7_A          153 WCEYYHNIYGVDVRSIRYPGLISW  176 (312)
T ss_dssp             HHHHHHHHHCCEEECEEECEEECS
T ss_pred             HHHHHHHhcCCcEEEEeCCeEecC
Confidence            55556666788777777 668884

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=98.19  E-value=6.2e-06  Score=72.68  Aligned_cols=101  Identities=18%  Similarity=0.181  Sum_probs=63.8

Q ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--hH----------HhhhhcccCCceEEEEecCCCHHh
Q 022947           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GV----------TADISHMDTNAVVRGFLGQQQLED  110 (289)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g~----------~~DL~~~~~~~~v~~~~~t~d~~e  110 (289)
                      ....+||+|||+ |.+|..++..|+..|+  +|.++|+++..  ..          ..++....  ....    ..+..+
T Consensus        16 ~~~~~kIgiIG~-G~mG~alA~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~e   86 (245)
T 3dtt_A           16 YFQGMKIAVLGT-GTVGRTMAGALADLGH--EVTIGTRDPKATLARAEPDAMGAPPFSQWLPEH--PHVH----LAAFAD   86 (245)
T ss_dssp             ---CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHTCC-------CCHHHHGGGS--TTCE----EEEHHH
T ss_pred             ccCCCeEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhhhhhcchhhhHHHhhc--Ccee----ccCHHH
Confidence            344679999998 9999999999999998  99999987532  00          11222111  1112    124678


Q ss_pred             hhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 022947          111 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (289)
Q Consensus       111 al~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd  167 (289)
                      ++++||+||++....    .        -.+.+.++.   ....++.+|+.++||.+
T Consensus        87 ~~~~aDvVilavp~~----~--------~~~~~~~i~---~~~l~g~ivi~~s~~~~  128 (245)
T 3dtt_A           87 VAAGAELVVNATEGA----S--------SIAALTAAG---AENLAGKILVDIANPLD  128 (245)
T ss_dssp             HHHHCSEEEECSCGG----G--------HHHHHHHHC---HHHHTTSEEEECCCCEE
T ss_pred             HHhcCCEEEEccCcH----H--------HHHHHHHhh---hhhcCCCEEEECCCCCC
Confidence            899999999985311    0        122333331   22227889999999873

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=98.18  E-value=2.2e-06  Score=76.29  Aligned_cols=98  Identities=21%  Similarity=0.198  Sum_probs=70.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhC--CCCEEEEcC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVIIPA  122 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~--~aDiVIita  122 (289)
                      ..+||.|+||+|++|++++..|+..|.  +|+++|++.     .|+.+.            .++.++++  ++|+||++|
T Consensus        11 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~-----~Dl~d~------------~~~~~~~~~~~~d~vih~A   71 (292)
T 1vl0_A           11 HHMKILITGANGQLGREIQKQLKGKNV--EVIPTDVQD-----LDITNV------------LAVNKFFNEKKPNVVINCA   71 (292)
T ss_dssp             -CEEEEEESTTSHHHHHHHHHHTTSSE--EEEEECTTT-----CCTTCH------------HHHHHHHHHHCCSEEEECC
T ss_pred             ccceEEEECCCChHHHHHHHHHHhCCC--eEEeccCcc-----CCCCCH------------HHHHHHHHhcCCCEEEECC
Confidence            357999999999999999999999886  899998752     233321            13445666  799999999


Q ss_pred             CCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          123 GVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       123 g~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      |.....  ..+..+.+..|+.....+++.+.+...  .++++|
T Consensus        72 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~--~iv~~S  112 (292)
T 1vl0_A           72 AHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA--EIVQIS  112 (292)
T ss_dssp             CCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             ccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEec
Confidence            864311  123345678899999999999988764  455444

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=98.17  E-value=1.6e-05  Score=72.90  Aligned_cols=68  Identities=21%  Similarity=0.299  Sum_probs=50.9

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      .++|||+|||+ |.+|..++..|+..|+  +|+++|+++..  ..++....    +..   ++++++++++||+||++..
T Consensus        29 ~~~~~I~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~--~~~l~~~g----~~~---~~~~~e~~~~aDvVi~~vp   96 (320)
T 4dll_A           29 PYARKITFLGT-GSMGLPMARRLCEAGY--ALQVWNRTPAR--AASLAALG----ATI---HEQARAAARDADIVVSMLE   96 (320)
T ss_dssp             CCCSEEEEECC-TTTHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHTTT----CEE---ESSHHHHHTTCSEEEECCS
T ss_pred             cCCCEEEEECc-cHHHHHHHHHHHhCCC--eEEEEcCCHHH--HHHHHHCC----CEe---eCCHHHHHhcCCEEEEECC
Confidence            35679999998 9999999999999998  99999987521  22222221    222   2467889999999999863

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=98.17  E-value=6.5e-06  Score=73.22  Aligned_cols=102  Identities=18%  Similarity=0.160  Sum_probs=68.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhC-CCccEEEEEeCCCchhHHhhhhcccCCceEEE--EecCCCHHhhhCCCCEEEEcCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTNAVVRG--FLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~-g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~--~~~t~d~~eal~~aDiVIitag  123 (289)
                      |||.|+||+|++|+.++..|... +.  +|++++++....  .++...  ...+..  +....++.++++++|+||+++|
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~--~V~~~~R~~~~~--~~~~~~--~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~   74 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHID--HFHIGVRNVEKV--PDDWRG--KVSVRQLDYFNQESMVEAFKGMDTVVFIPS   74 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCT--TEEEEESSGGGS--CGGGBT--TBEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCC--cEEEEECCHHHH--HHhhhC--CCEEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence            68999999999999999988887 66  889998875211  111111  111111  1112346678999999999987


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEe
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI  162 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~  162 (289)
                      ....        ...|+...+.+++.+++....-+|.+.
T Consensus        75 ~~~~--------~~~~~~~~~~l~~aa~~~gv~~iv~~S  105 (289)
T 3e48_A           75 IIHP--------SFKRIPEVENLVYAAKQSGVAHIIFIG  105 (289)
T ss_dssp             CCCS--------HHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCcc--------chhhHHHHHHHHHHHHHcCCCEEEEEc
Confidence            5421        134778888999998887655444443

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=98.17  E-value=2.2e-06  Score=76.44  Aligned_cols=99  Identities=16%  Similarity=0.167  Sum_probs=69.8

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCC--CCEEEEcCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTG--MDIVIIPAGV  124 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~--aDiVIitag~  124 (289)
                      |||.|+||+|++|++++..|+ .|+  +|+++|++.. ....|+.+.            .++.+++++  +|+||++||.
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~g~--~V~~~~r~~~-~~~~D~~d~------------~~~~~~~~~~~~d~vih~a~~   64 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLA-PVG--NLIALDVHSK-EFCGDFSNP------------KGVAETVRKLRPDVIVNAAAH   64 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT-TTS--EEEEECTTCS-SSCCCTTCH------------HHHHHHHHHHCCSEEEECCCC
T ss_pred             CeEEEECCCCHHHHHHHHHhh-cCC--eEEEeccccc-cccccCCCH------------HHHHHHHHhcCCCEEEECccc
Confidence            589999999999999999888 786  9999988651 111222221            234566765  9999999986


Q ss_pred             CCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          125 PRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       125 ~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      ....  ..+..+.+..|+.....+++.+++...  .++++|
T Consensus        65 ~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  103 (299)
T 1n2s_A           65 TAVDKAESEPELAQLLNATSVEAIAKAANETGA--WVVHYS  103 (299)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC--EEEEEE
T ss_pred             CCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEEe
Confidence            4311  123456778899999999999887654  455544

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=98.16  E-value=7.7e-06  Score=75.03  Aligned_cols=120  Identities=13%  Similarity=0.171  Sum_probs=74.6

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCc--cEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEc
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~--~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIit  121 (289)
                      +++|||+|||+ |.+|..++..|...|..  .+|.++|+++.......+....    +..   +++..++++++|+||++
T Consensus        20 ~~~mkI~iIG~-G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G----~~~---~~~~~e~~~~aDvVila   91 (322)
T 2izz_A           20 FQSMSVGFIGA-GQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMG----VKL---TPHNKETVQHSDVLFLA   91 (322)
T ss_dssp             --CCCEEEESC-SHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHT----CEE---ESCHHHHHHHCSEEEEC
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcC----CEE---eCChHHHhccCCEEEEE
Confidence            44679999998 99999999999988821  3899999875311222232211    222   23566888999999998


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022947          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (289)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~  191 (289)
                      .. +               ..+.++++.+.... |+.+|+.++|.+..- . +.+.+.+  .++..++++.
T Consensus        92 v~-~---------------~~~~~vl~~l~~~l~~~~ivvs~s~gi~~~-~-l~~~l~~--~~~~~~vv~~  142 (322)
T 2izz_A           92 VK-P---------------HIIPFILDEIGADIEDRHIVVSCAAGVTIS-S-IEKKLSA--FRPAPRVIRC  142 (322)
T ss_dssp             SC-G---------------GGHHHHHHHHGGGCCTTCEEEECCTTCCHH-H-HHHHHHT--TSSCCEEEEE
T ss_pred             eC-H---------------HHHHHHHHHHHhhcCCCCEEEEeCCCCCHH-H-HHHHHhh--cCCCCeEEEE
Confidence            62 1               12445556666654 678888888887642 1 2233332  1344566643

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=98.16  E-value=1.2e-05  Score=69.78  Aligned_cols=103  Identities=18%  Similarity=0.174  Sum_probs=69.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchh---HHhhhhcccCCceEEEEecCCCHHhhh----CCCCEEE
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMDTNAVVRGFLGQQQLEDAL----TGMDIVI  119 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g---~~~DL~~~~~~~~v~~~~~t~d~~eal----~~aDiVI  119 (289)
                      ++|.|+||+|++|++++..|+..|.  +|+++|++....   ...|+.+.            .++++++    .+.|+||
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~D~~~~------------~~~~~~~~~~~~~~d~vi   67 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGH--TVIGIDRGQADIEADLSTPGGRE------------TAVAAVLDRCGGVLDGLV   67 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSSSEECCTTSHHHHH------------HHHHHHHHHHTTCCSEEE
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCChhHccccccCCcccH------------HHHHHHHHHcCCCccEEE
Confidence            4899999999999999999999997  899999876211   12233321            1223333    3899999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 022947          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (289)
Q Consensus       120 itag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tN  164 (289)
                      ++||..... ....+.+..|+.....+++.+.+.   ...+.++++|.
T Consensus        68 ~~Ag~~~~~-~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS  114 (255)
T 2dkn_A           68 CCAGVGVTA-ANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGS  114 (255)
T ss_dssp             ECCCCCTTS-SCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECC
T ss_pred             ECCCCCCcc-hhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEec
Confidence            999975422 234556778887777777766554   22355666553

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=98.16  E-value=5.7e-06  Score=74.61  Aligned_cols=99  Identities=14%  Similarity=0.196  Sum_probs=66.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCC-ccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~-~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      +++||+|||+ |.+|..++..|...|+ ..+|.++|+++..  ..++....   .+..   +.+..++++++|+||++. 
T Consensus         2 ~~~~I~iIG~-G~mG~aia~~l~~~g~~~~~V~v~dr~~~~--~~~l~~~~---gi~~---~~~~~~~~~~aDvVilav-   71 (280)
T 3tri_A            2 NTSNITFIGG-GNMARNIVVGLIANGYDPNRICVTNRSLDK--LDFFKEKC---GVHT---TQDNRQGALNADVVVLAV-   71 (280)
T ss_dssp             CCSCEEEESC-SHHHHHHHHHHHHTTCCGGGEEEECSSSHH--HHHHHHTT---CCEE---ESCHHHHHSSCSEEEECS-
T ss_pred             CCCEEEEEcc-cHHHHHHHHHHHHCCCCCCeEEEEeCCHHH--HHHHHHHc---CCEE---eCChHHHHhcCCeEEEEe-
Confidence            3579999998 9999999999998885 4589999998632  12222210   1222   235678899999999986 


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHh--CCCcEEEEecCCCcc
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKC--CPKAIVNLISNPVNS  168 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~--~p~aiviv~tNPvd~  168 (289)
                       +  +            ..+.++++.+..+  .++.+++.+++.+.+
T Consensus        72 -~--p------------~~~~~vl~~l~~~~l~~~~iiiS~~agi~~  103 (280)
T 3tri_A           72 -K--P------------HQIKMVCEELKDILSETKILVISLAVGVTT  103 (280)
T ss_dssp             -C--G------------GGHHHHHHHHHHHHHTTTCEEEECCTTCCH
T ss_pred             -C--H------------HHHHHHHHHHHhhccCCCeEEEEecCCCCH
Confidence             1  1            1244566666665  466677766776653

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=98.15  E-value=6.8e-06  Score=69.53  Aligned_cols=105  Identities=13%  Similarity=0.096  Sum_probs=70.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEec----CCCHHhhhCCCCEEEEc
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG----QQQLEDALTGMDIVIIP  121 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~----t~d~~eal~~aDiVIit  121 (289)
                      +|||.|+||+|++|+.++..|+..|...+|+++++++.. .     +    ..+..+..    .+++.+++  +|+||++
T Consensus         5 ~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~-~-----~----~~~~~~~~D~~~~~~~~~~~--~d~vi~~   72 (215)
T 2a35_A            5 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA-E-----H----PRLDNPVGPLAELLPQLDGS--IDTAFCC   72 (215)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC-C-----C----TTEECCBSCHHHHGGGCCSC--CSEEEEC
T ss_pred             CceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc-c-----C----CCceEEeccccCHHHHHHhh--hcEEEEC
Confidence            469999999999999999999998865589999987632 0     0    11111110    11222333  8999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      +|.......+..+++..|+.....+++.+.+.... .++++|
T Consensus        73 a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S  113 (215)
T 2a35_A           73 LGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGAR-HYLVVS  113 (215)
T ss_dssp             CCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEC
T ss_pred             eeeccccCCCHHHHHHhhHHHHHHHHHHHHHcCCC-EEEEEC
Confidence            98653222345567788999999999998877544 344444

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=98.15  E-value=5.3e-06  Score=76.48  Aligned_cols=101  Identities=16%  Similarity=0.211  Sum_probs=67.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCC-------CccEEEEEeCCCc-----hhHHhhhhccc--------CCceEEEEec
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINP-------LVSVLHLYDVVNT-----PGVTADISHMD--------TNAVVRGFLG  104 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g-------~~~eI~LvD~~~~-----~g~~~DL~~~~--------~~~~v~~~~~  104 (289)
                      .+|||+|||+ |.+|+.++..|+..|       +  +|.++|+++.     ....+.-.+..        ....+..   
T Consensus         7 ~~mkI~iIG~-G~mG~~~a~~l~~~g~~~~~~~~--~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---   80 (354)
T 1x0v_A            7 ASKKVCIVGS-GNWGSAIAKIVGGNAAQLAQFDP--RVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVA---   80 (354)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHHHHHCTTEEE--EEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEE---
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHhcCCcccCCCC--eEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEE---
Confidence            3579999998 999999999998877       5  8999998763     22222111100        0112332   


Q ss_pred             CCCHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCc
Q 022947          105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVN  167 (289)
Q Consensus       105 t~d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd  167 (289)
                      ++++.++++++|+||++...                ..+.++++.+..+. |+.+++.++|..+
T Consensus        81 ~~~~~~~~~~aD~Vilav~~----------------~~~~~v~~~i~~~l~~~~ivv~~~~Gi~  128 (354)
T 1x0v_A           81 VPDVVQAAEDADILIFVVPH----------------QFIGKICDQLKGHLKANATGISLIKGVD  128 (354)
T ss_dssp             ESSHHHHHTTCSEEEECCCG----------------GGHHHHHHHHTTCSCTTCEEEECCCCBC
T ss_pred             EcCHHHHHcCCCEEEEeCCH----------------HHHHHHHHHHHhhCCCCCEEEEECCccC
Confidence            34677889999999998521                12456667777665 6888888888554

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=98.13  E-value=4.3e-06  Score=76.15  Aligned_cols=113  Identities=19%  Similarity=0.105  Sum_probs=72.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--------hhHHhhhhcccCCceEEEEe-cC---CCHHhhhC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--------PGVTADISHMDTNAVVRGFL-GQ---QQLEDALT  113 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--------~g~~~DL~~~~~~~~v~~~~-~t---~d~~eal~  113 (289)
                      +|||.|+||+|++|++++..|+..|+  +|+++|+...        .....++.... ...+..+. +-   .++.++++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~   78 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGY--LPVVIDNFHNAFRGGGSLPESLRRVQELT-GRSVEFEEMDILDQGALQRLFK   78 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC--CEEEEECSSSSCBCSSSSBHHHHHHHHHH-TCCCEEEECCTTCHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecCCcccccccccHHHHHHHHhcc-CCceEEEECCCCCHHHHHHHHH
Confidence            46999999999999999999999987  8999987531        11112222110 11122111 11   23445566


Q ss_pred             --CCCEEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEE
Q 022947          114 --GMDIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL  161 (289)
Q Consensus       114 --~aDiVIitag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv  161 (289)
                        ++|+||++||.....  .....+.+..|+.....+++.+++.....+|.+
T Consensus        79 ~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~  130 (348)
T 1ek6_A           79 KYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFS  130 (348)
T ss_dssp             HCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             hcCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence              899999999864211  012345678899999999999887654444433

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=98.13  E-value=7.1e-06  Score=75.10  Aligned_cols=121  Identities=13%  Similarity=0.126  Sum_probs=73.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhh----hhcccCCceEEE--EecCCCHHhhhCCCCEEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTAD----ISHMDTNAVVRG--FLGQQQLEDALTGMDIVI  119 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~D----L~~~~~~~~v~~--~~~t~d~~eal~~aDiVI  119 (289)
                      +|||+|||+ |.+|..++..|...|.  +|.++|+++. ....+    +... .......  ...+++.+++.+++|+||
T Consensus         2 ~mkI~IiGa-GaiG~~~a~~L~~~g~--~V~~~~r~~~-~~i~~~Gl~~~~~-~~g~~~~~~~~~~~~~~~~~~~~DlVi   76 (320)
T 3i83_A            2 SLNILVIGT-GAIGSFYGALLAKTGH--CVSVVSRSDY-ETVKAKGIRIRSA-TLGDYTFRPAAVVRSAAELETKPDCTL   76 (320)
T ss_dssp             -CEEEEESC-CHHHHHHHHHHHHTTC--EEEEECSTTH-HHHHHHCEEEEET-TTCCEEECCSCEESCGGGCSSCCSEEE
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCChH-HHHHhCCcEEeec-CCCcEEEeeeeeECCHHHcCCCCCEEE
Confidence            479999998 9999999999999987  9999998762 11111    1110 0111111  111235545445999999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEE-eeec
Q 022947          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG-VTML  194 (289)
Q Consensus       120 itag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG-~t~l  194 (289)
                      ++.-..    .            +.++++.++.+- |+..|+.+.|-++..-     .+++.  +|.++|++ ++..
T Consensus        77 lavK~~----~------------~~~~l~~l~~~l~~~t~Iv~~~nGi~~~~-----~l~~~--~~~~~vl~g~~~~  130 (320)
T 3i83_A           77 LCIKVV----E------------GADRVGLLRDAVAPDTGIVLISNGIDIEP-----EVAAA--FPDNEVISGLAFI  130 (320)
T ss_dssp             ECCCCC----T------------TCCHHHHHTTSCCTTCEEEEECSSSSCSH-----HHHHH--STTSCEEEEEEEE
T ss_pred             EecCCC----C------------hHHHHHHHHhhcCCCCEEEEeCCCCChHH-----HHHHH--CCCCcEEEEEEEe
Confidence            985322    1            112345555543 6788888899987653     23333  56677774 4443

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=98.13  E-value=5.3e-06  Score=84.35  Aligned_cols=101  Identities=19%  Similarity=0.197  Sum_probs=69.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc---hhH--Hhh----hhcccC---------CceEEEEecCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGV--TAD----ISHMDT---------NAVVRGFLGQQ  106 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~---~g~--~~D----L~~~~~---------~~~v~~~~~t~  106 (289)
                      +.+||+|||+ |.+|+.+|..++..|+  +|+++|+++.   .+.  ..+    +.....         ..+++.   ++
T Consensus       313 ~i~kV~VIGa-G~MG~~iA~~la~aG~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~  386 (715)
T 1wdk_A          313 DVKQAAVLGA-GIMGGGIAYQSASKGT--PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP---TL  386 (715)
T ss_dssp             CCSSEEEECC-HHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE---ES
T ss_pred             cCCEEEEECC-ChhhHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEE---EC
Confidence            4578999998 9999999999999998  9999999861   111  011    111100         012443   34


Q ss_pred             CHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcc
Q 022947          107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS  168 (289)
Q Consensus       107 d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~  168 (289)
                      |+ +++++||+||++..              ++..+.+++...+.+++ |++++  +||.+.+
T Consensus       387 d~-~~~~~aDlVIeaV~--------------e~~~vk~~v~~~l~~~~~~~~Il--asntStl  432 (715)
T 1wdk_A          387 SY-GDFGNVDLVVEAVV--------------ENPKVKQAVLAEVENHVREDAIL--ASNTSTI  432 (715)
T ss_dssp             SS-TTGGGCSEEEECCC--------------SCHHHHHHHHHHHHTTSCTTCEE--EECCSSS
T ss_pred             CH-HHHCCCCEEEEcCC--------------CCHHHHHHHHHHHHhhCCCCeEE--EeCCCCC
Confidence            66 78999999999852              24566777888888887 56655  5776554

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=98.11  E-value=8.6e-06  Score=76.11  Aligned_cols=101  Identities=11%  Similarity=0.166  Sum_probs=68.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCC-------CccEEEEEeCCCc-h--hHHhhhhccc----------CCceEEEEecC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINP-------LVSVLHLYDVVNT-P--GVTADISHMD----------TNAVVRGFLGQ  105 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g-------~~~eI~LvD~~~~-~--g~~~DL~~~~----------~~~~v~~~~~t  105 (289)
                      +|||+|||+ |.+|+.++..|+..|       +  +|.++|+++. .  .....+....          ....+..   +
T Consensus        21 ~~kI~iIGa-G~mG~alA~~L~~~G~~~~~~~~--~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~---~   94 (375)
T 1yj8_A           21 PLKISILGS-GNWASAISKVVGTNAKNNYLFEN--EVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVA---H   94 (375)
T ss_dssp             CBCEEEECC-SHHHHHHHHHHHHHHHHCTTBCS--CEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEE---E
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHcCCccCCCCC--eEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEE---E
Confidence            468999998 999999999998877       5  8999998763 0  0222222110          0112332   3


Q ss_pred             CCHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHH----hC-CCcEEEEecCCCcc
Q 022947          106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAK----CC-PKAIVNLISNPVNS  168 (289)
Q Consensus       106 ~d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~----~~-p~aiviv~tNPvd~  168 (289)
                      +++.++++++|+||++..                ...+.++++.+..    +. |+.+++.++|.++.
T Consensus        95 ~~~~ea~~~aDvVilav~----------------~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~  146 (375)
T 1yj8_A           95 SDLASVINDADLLIFIVP----------------CQYLESVLASIKESESIKIASHAKAISLTKGFIV  146 (375)
T ss_dssp             SSTHHHHTTCSEEEECCC----------------HHHHHHHHHHHTC---CCCCTTCEEEECCCSCEE
T ss_pred             CCHHHHHcCCCEEEEcCC----------------HHHHHHHHHHHhhhhhccCCCCCEEEEeCCcccc
Confidence            466788999999999852                1346677777876    54 68888888886543

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=98.11  E-value=1e-05  Score=69.68  Aligned_cols=76  Identities=26%  Similarity=0.375  Sum_probs=56.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      ++||+|||+ |.+|+.++..|+..|+  +|.++|+++.                           ++++||+||++..  
T Consensus        19 ~~~I~iiG~-G~mG~~la~~l~~~g~--~V~~~~~~~~---------------------------~~~~aD~vi~av~--   66 (209)
T 2raf_A           19 GMEITIFGK-GNMGQAIGHNFEIAGH--EVTYYGSKDQ---------------------------ATTLGEIVIMAVP--   66 (209)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECTTCC---------------------------CSSCCSEEEECSC--
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEcCCHH---------------------------HhccCCEEEEcCC--
Confidence            469999998 9999999999999997  9999987542                           3578999999853  


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 022947          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (289)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd  167 (289)
                                    ...++++++.+.++.++.+++.++|+.+
T Consensus        67 --------------~~~~~~v~~~l~~~~~~~~vi~~~~g~~   94 (209)
T 2raf_A           67 --------------YPALAALAKQYATQLKGKIVVDITNPLN   94 (209)
T ss_dssp             --------------HHHHHHHHHHTHHHHTTSEEEECCCCBC
T ss_pred             --------------cHHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence                          1123444445544334788888999765

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=98.11  E-value=1.4e-06  Score=77.62  Aligned_cols=104  Identities=9%  Similarity=0.065  Sum_probs=65.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEE-EEecCCCHHhhhCC-CCEEEEcC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLEDALTG-MDIVIIPA  122 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~-~~~~t~d~~eal~~-aDiVIita  122 (289)
                      ++|||.|+|+ |++|++++..|+..|+  +|+.++++...     +.. . ...+. .+....++.+++++ +|+||++|
T Consensus         2 ~~~~ilVtGa-G~iG~~l~~~L~~~g~--~V~~~~r~~~~-----~~~-~-~~~~~~Dl~d~~~~~~~~~~~~d~vih~a   71 (286)
T 3gpi_A            2 SLSKILIAGC-GDLGLELARRLTAQGH--EVTGLRRSAQP-----MPA-G-VQTLIADVTRPDTLASIVHLRPEILVYCV   71 (286)
T ss_dssp             CCCCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECTTSC-----CCT-T-CCEEECCTTCGGGCTTGGGGCCSEEEECH
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCccc-----ccc-C-CceEEccCCChHHHHHhhcCCCCEEEEeC
Confidence            4579999996 9999999999999997  89999987521     000 0 00000 00111233455666 99999998


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEE
Q 022947          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL  161 (289)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv  161 (289)
                      |...   .+..+....|+...+.+++.+++....-+|.+
T Consensus        72 ~~~~---~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~  107 (286)
T 3gpi_A           72 AASE---YSDEHYRLSYVEGLRNTLSALEGAPLQHVFFV  107 (286)
T ss_dssp             HHHH---HC-----CCSHHHHHHHHHHTTTSCCCEEEEE
T ss_pred             CCCC---CCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence            7532   12234556789999999999887554444433

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=98.10  E-value=7.6e-06  Score=74.63  Aligned_cols=68  Identities=13%  Similarity=0.185  Sum_probs=50.9

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      .++|||+|||+ |.+|..++..|+..|+  +|.++|+++...  .++....    +..   .+++.+++++||+||++..
T Consensus        19 ~~m~~I~iIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~~--~~l~~~g----~~~---~~~~~~~~~~aDvvi~~vp   86 (310)
T 3doj_A           19 SHMMEVGFLGL-GIMGKAMSMNLLKNGF--KVTVWNRTLSKC--DELVEHG----ASV---CESPAEVIKKCKYTIAMLS   86 (310)
T ss_dssp             CCSCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSGGGG--HHHHHTT----CEE---CSSHHHHHHHCSEEEECCS
T ss_pred             ccCCEEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCHHHH--HHHHHCC----CeE---cCCHHHHHHhCCEEEEEcC
Confidence            34679999998 9999999999999998  999999976321  2222211    121   3467888999999999863

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=98.08  E-value=5.9e-06  Score=75.35  Aligned_cols=115  Identities=16%  Similarity=0.208  Sum_probs=72.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhccc-----CCceEEE--EecCCCHHhhhCCCCEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-----TNAVVRG--FLGQQQLEDALTGMDIV  118 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~-----~~~~v~~--~~~t~d~~eal~~aDiV  118 (289)
                      +|||+|||+ |.+|+.++..|+..|.  +|.++|+++.  .  .+....     .......  ...+++. +++.++|+|
T Consensus         2 ~mkI~IiGa-GaiG~~~a~~L~~~g~--~V~~~~r~~~--~--~i~~~g~~~~~~~g~~~~~~~~~~~~~-~~~~~~D~v   73 (312)
T 3hn2_A            2 SLRIAIVGA-GALGLYYGALLQRSGE--DVHFLLRRDY--E--AIAGNGLKVFSINGDFTLPHVKGYRAP-EEIGPMDLV   73 (312)
T ss_dssp             --CEEEECC-STTHHHHHHHHHHTSC--CEEEECSTTH--H--HHHHTCEEEEETTCCEEESCCCEESCH-HHHCCCSEE
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHCCC--eEEEEEcCcH--H--HHHhCCCEEEcCCCeEEEeeceeecCH-HHcCCCCEE
Confidence            479999998 9999999999999987  8999998752  1  111110     0111110  1112355 558999999


Q ss_pred             EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022947          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (289)
Q Consensus       119 Iitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~  191 (289)
                      |++.-    +..            +.++++.++.+- |+..|+.+.|-++....     +.+.  +|+.+|++-
T Consensus        74 ilavk----~~~------------~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~-----l~~~--~~~~~v~~~  124 (312)
T 3hn2_A           74 LVGLK----TFA------------NSRYEELIRPLVEEGTQILTLQNGLGNEEA-----LATL--FGAERIIGG  124 (312)
T ss_dssp             EECCC----GGG------------GGGHHHHHGGGCCTTCEEEECCSSSSHHHH-----HHHH--TCGGGEEEE
T ss_pred             EEecC----CCC------------cHHHHHHHHhhcCCCCEEEEecCCCCcHHH-----HHHH--CCCCcEEEE
Confidence            99852    111            234556666654 78888888999876432     2333  666777753

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=98.08  E-value=1e-05  Score=74.21  Aligned_cols=94  Identities=15%  Similarity=0.201  Sum_probs=62.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcccCCceEEEEecCCCHHh-hhCCCCEEEEcCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLED-ALTGMDIVIIPAG  123 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~~~~~~v~~~~~t~d~~e-al~~aDiVIitag  123 (289)
                      .+||+|||+ |.+|.+++..|...|+..+|+++|+++. ...+.++.-.    . ..   ++++++ ++++||+||++..
T Consensus        33 ~~kI~IIG~-G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~----~-~~---~~~~~~~~~~~aDvVilavp  103 (314)
T 3ggo_A           33 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGII----D-EG---TTSIAKVEDFSPDFVMLSSP  103 (314)
T ss_dssp             CSEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSC----S-EE---ESCTTGGGGGCCSEEEECSC
T ss_pred             CCEEEEEee-CHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCc----c-hh---cCCHHHHhhccCCEEEEeCC
Confidence            479999998 9999999999999997668999999762 1122221110    0 11   235567 7999999999852


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tN  164 (289)
                      ..                .+.++++.+..+. |+++|+.++.
T Consensus       104 ~~----------------~~~~vl~~l~~~l~~~~iv~d~~S  129 (314)
T 3ggo_A          104 VR----------------TFREIAKKLSYILSEDATVTDQGS  129 (314)
T ss_dssp             GG----------------GHHHHHHHHHHHSCTTCEEEECCS
T ss_pred             HH----------------HHHHHHHHHhhccCCCcEEEECCC
Confidence            11                1334455566554 6777765543

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=98.06  E-value=6.3e-06  Score=73.02  Aligned_cols=103  Identities=15%  Similarity=0.136  Sum_probs=68.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhC--CCccEEEEEeCCCchhHHhhhhcccCCceEEE--EecCCCHHhhhCCCCEEEEcC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDTNAVVRG--FLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~--g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~--~~~t~d~~eal~~aDiVIita  122 (289)
                      |||.|+||+|++|++++..|+..  |+  +|++++++.....  ++....  ..+..  +....++.++++++|+||+++
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~--~l~~~~--~~~~~~D~~d~~~l~~~~~~~d~vi~~a   74 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPAS--QIIAIVRNVEKAS--TLADQG--VEVRHGDYNQPESLQKAFAGVSKLLFIS   74 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGG--GEEEEESCTTTTH--HHHHTT--CEEEECCTTCHHHHHHHTTTCSEEEECC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCC--eEEEEEcCHHHHh--HHhhcC--CeEEEeccCCHHHHHHHHhcCCEEEEcC
Confidence            47999999999999999999887  76  8999998763211  121111  11111  111124567889999999998


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      +..  .+  .    ..|+...+.+++.+++....-+|.+.|
T Consensus        75 ~~~--~~--~----~~n~~~~~~l~~a~~~~~~~~~v~~Ss  107 (287)
T 2jl1_A           75 GPH--YD--N----TLLIVQHANVVKAARDAGVKHIAYTGY  107 (287)
T ss_dssp             CCC--SC--H----HHHHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred             CCC--cC--c----hHHHHHHHHHHHHHHHcCCCEEEEECC
Confidence            853  11  1    348888889999888766444444433

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=98.06  E-value=9.5e-06  Score=74.29  Aligned_cols=114  Identities=16%  Similarity=0.203  Sum_probs=71.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcc-----cCCceEEE-EecCCCHHhhhCCCCEEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-----DTNAVVRG-FLGQQQLEDALTGMDIVI  119 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~-----~~~~~v~~-~~~t~d~~eal~~aDiVI  119 (289)
                      ++||+|||+ |.+|..++..|+..|+  +|.++ .++..  ...+...     ........ ...+++. ++++++|+||
T Consensus        19 ~~kI~IiGa-Ga~G~~~a~~L~~~G~--~V~l~-~~~~~--~~~i~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vi   91 (318)
T 3hwr_A           19 GMKVAIMGA-GAVGCYYGGMLARAGH--EVILI-ARPQH--VQAIEATGLRLETQSFDEQVKVSASSDP-SAVQGADLVL   91 (318)
T ss_dssp             -CEEEEESC-SHHHHHHHHHHHHTTC--EEEEE-CCHHH--HHHHHHHCEEEECSSCEEEECCEEESCG-GGGTTCSEEE
T ss_pred             CCcEEEECc-CHHHHHHHHHHHHCCC--eEEEE-EcHhH--HHHHHhCCeEEEcCCCcEEEeeeeeCCH-HHcCCCCEEE
Confidence            459999998 9999999999999997  99999 65421  1111110     00011110 1113455 5579999999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEE
Q 022947          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (289)
Q Consensus       120 itag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG  190 (289)
                      ++....                .+.++++.++.+. |+.+|+.++|.++....     +.+.  +| +++++
T Consensus        92 lavk~~----------------~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~-----l~~~--~~-~~vl~  139 (318)
T 3hwr_A           92 FCVKST----------------DTQSAALAMKPALAKSALVLSLQNGVENADT-----LRSL--LE-QEVAA  139 (318)
T ss_dssp             ECCCGG----------------GHHHHHHHHTTTSCTTCEEEEECSSSSHHHH-----HHHH--CC-SEEEE
T ss_pred             EEcccc----------------cHHHHHHHHHHhcCCCCEEEEeCCCCCcHHH-----HHHH--cC-CcEEE
Confidence            985211                1356677777664 78888889999987532     2333  55 67774

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=98.06  E-value=8.1e-06  Score=75.83  Aligned_cols=104  Identities=14%  Similarity=0.222  Sum_probs=66.2

Q ss_pred             CCCCCCC-EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhccc----------CCceEEEEecCCCHH
Q 022947           41 KGGSPGF-KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----------TNAVVRGFLGQQQLE  109 (289)
Q Consensus        41 ~~~~~~~-KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~----------~~~~v~~~~~t~d~~  109 (289)
                      ++.+++| ||+|||+ |.+|..++..|+..|+  +|.++|+++...  ..+....          ....+..   ++++.
T Consensus         9 ~~~~m~M~kI~iIG~-G~mG~~la~~L~~~G~--~V~~~~r~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~   80 (366)
T 1evy_A            9 KDELLYLNKAVVFGS-GAFGTALAMVLSKKCR--EVCVWHMNEEEV--RLVNEKRENVLFLKGVQLASNITF---TSDVE   80 (366)
T ss_dssp             CCCCCCEEEEEEECC-SHHHHHHHHHHTTTEE--EEEEECSCHHHH--HHHHHHTBCTTTSTTCBCCTTEEE---ESCHH
T ss_pred             hhHhhccCeEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHH--HHHHHcCcccccccccccccceee---eCCHH
Confidence            3444445 9999998 9999999999998887  999999875211  1111100          0112332   24677


Q ss_pred             hhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHH----HHHhC-C-CcEEEEecCCCcc
Q 022947          110 DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEG----IAKCC-P-KAIVNLISNPVNS  168 (289)
Q Consensus       110 eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~----i~~~~-p-~aiviv~tNPvd~  168 (289)
                      ++++++|+||++...                ..+.++++.    +..+. | +.+|+.++|.++.
T Consensus        81 ~~~~~aDvVilav~~----------------~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~  129 (366)
T 1evy_A           81 KAYNGAEIILFVIPT----------------QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIER  129 (366)
T ss_dssp             HHHTTCSSEEECCCH----------------HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCT
T ss_pred             HHHcCCCEEEECCCh----------------HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCC
Confidence            789999999998520                123444444    54433 5 6778888876543

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=98.06  E-value=2.7e-05  Score=70.45  Aligned_cols=117  Identities=18%  Similarity=0.166  Sum_probs=70.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh------
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL------  112 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal------  112 (289)
                      +.++|.|+||+|.+|..++..|+..|.  +|++.|+++.  .....++....  .++..+. +-+|   .++.+      
T Consensus        30 ~gk~vlVTGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  105 (301)
T 3tjr_A           30 DGRAAVVTGGASGIGLATATEFARRGA--RLVLSDVDQPALEQAVNGLRGQG--FDAHGVVCDVRHLDEMVRLADEAFRL  105 (301)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHh
Confidence            346899999999999999999999997  8999999862  22223333221  1222211 1122   22223      


Q ss_pred             -CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecCC
Q 022947          113 -TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       113 -~~aDiVIitag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~tNP  165 (289)
                       ...|++|.+||......   .+   -...+..|+..    .+.+.+.+.+..+.+.|+++|..
T Consensus       106 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~  169 (301)
T 3tjr_A          106 LGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASF  169 (301)
T ss_dssp             HSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCG
T ss_pred             CCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCch
Confidence             37899999999753211   11   22345556544    44445555555556777777653

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=98.05  E-value=2.6e-05  Score=69.29  Aligned_cols=117  Identities=19%  Similarity=0.220  Sum_probs=71.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal-------  112 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|++..  .....++........+..+. +-.|   +++.+       
T Consensus        32 ~k~vlVTGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  109 (279)
T 1xg5_A           32 DRLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH  109 (279)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhC
Confidence            45899999999999999999999997  8999998752  11122222211112233221 1122   22222       


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHH----HHHHHHHHHHhCC-CcEEEEecC
Q 022947          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCP-KAIVNLISN  164 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~i~~~~p-~aiviv~tN  164 (289)
                      .+.|+||.+||......   .+   ....+..|+..    .+.+.+.+++... .+.|+++|.
T Consensus       110 g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS  172 (279)
T 1xg5_A          110 SGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININS  172 (279)
T ss_dssp             CCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcC
Confidence            37999999998653211   11   23356667666    7777888877653 466766654

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=98.05  E-value=6e-06  Score=73.89  Aligned_cols=107  Identities=16%  Similarity=0.034  Sum_probs=69.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCC-CccEEEEEeCCCchhHHhhhhcccCCceEEE--EecCCCHHhhhCCCCEEEEcC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTNAVVRG--FLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g-~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~--~~~t~d~~eal~~aDiVIita  122 (289)
                      +++|.|+||+|++|++++..|+..| .  +|+++++++......++....  ..+..  +....++.++++++|+||+++
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~--~V~~~~R~~~~~~~~~l~~~~--~~~~~~D~~d~~~l~~~~~~~d~vi~~a   80 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTF--KVRVVTRNPRKKAAKELRLQG--AEVVQGDQDDQVIMELALNGAYATFIVT   80 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSS--EEEEEESCTTSHHHHHHHHTT--CEEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCc--eEEEEEcCCCCHHHHHHHHCC--CEEEEecCCCHHHHHHHHhcCCEEEEeC
Confidence            4689999999999999999888877 6  899999876322222222211  11111  111124667889999999998


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      |.....      ....|+...+.+++.+++.... .+++.|
T Consensus        81 ~~~~~~------~~~~~~~~~~~~~~aa~~~gv~-~iv~~S  114 (299)
T 2wm3_A           81 NYWESC------SQEQEVKQGKLLADLARRLGLH-YVVYSG  114 (299)
T ss_dssp             CHHHHT------CHHHHHHHHHHHHHHHHHHTCS-EEEECC
T ss_pred             CCCccc------cchHHHHHHHHHHHHHHHcCCC-EEEEEc
Confidence            742111      1245677888888888877544 344433

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=98.05  E-value=1e-05  Score=72.66  Aligned_cols=91  Identities=10%  Similarity=0.171  Sum_probs=61.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~~  126 (289)
                      |||+|||+ |.+|..++..|+..|+  +|+++|+++...  .++....    +..   ++++++++++||+||++...+ 
T Consensus         2 ~~i~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~~--~~~~~~g----~~~---~~~~~~~~~~aDvvi~~vp~~-   68 (287)
T 3pef_A            2 QKFGFIGL-GIMGSAMAKNLVKAGC--SVTIWNRSPEKA--EELAALG----AER---AATPCEVVESCPVTFAMLADP-   68 (287)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSGGGG--HHHHHTT----CEE---CSSHHHHHHHCSEEEECCSSH-
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCC--eEEEEcCCHHHH--HHHHHCC----Cee---cCCHHHHHhcCCEEEEEcCCH-
Confidence            69999998 9999999999999998  999999976321  1122211    121   346788899999999985321 


Q ss_pred             CCCCchhhHHHhhHHHHHHHH---HHHHHhC-CCcEEEEecC
Q 022947          127 KPGMTRDDLFNINAGIVKTLC---EGIAKCC-PKAIVNLISN  164 (289)
Q Consensus       127 ~~g~~r~d~~~~N~~i~~~i~---~~i~~~~-p~aiviv~tN  164 (289)
                                    ..+++++   +.+.+.. |+.+++..|+
T Consensus        69 --------------~~~~~v~~~~~~l~~~l~~~~~vi~~st   96 (287)
T 3pef_A           69 --------------AAAEEVCFGKHGVLEGIGEGRGYVDMST   96 (287)
T ss_dssp             --------------HHHHHHHHSTTCHHHHCCTTCEEEECSC
T ss_pred             --------------HHHHHHHcCcchHhhcCCCCCEEEeCCC
Confidence                          2244444   4555554 5666665544

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=98.04  E-value=2e-05  Score=71.29  Aligned_cols=91  Identities=19%  Similarity=0.302  Sum_probs=61.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      ++||+|||+ |.+|..++..|+..|+  +|+++|+++....  ++....    +..   +++++++++ ||+||++...+
T Consensus        15 ~~~I~vIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~--~~~~~g----~~~---~~~~~~~~~-aDvvi~~vp~~   81 (296)
T 3qha_A           15 QLKLGYIGL-GNMGAPMATRMTEWPG--GVTVYDIRIEAMT--PLAEAG----ATL---ADSVADVAA-ADLIHITVLDD   81 (296)
T ss_dssp             CCCEEEECC-STTHHHHHHHHTTSTT--CEEEECSSTTTSH--HHHHTT----CEE---CSSHHHHTT-SSEEEECCSSH
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHCCC--eEEEEeCCHHHHH--HHHHCC----CEE---cCCHHHHHh-CCEEEEECCCh
Confidence            469999998 9999999999999998  8999999873211  122211    121   356778888 99999986321


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 022947          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (289)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tN  164 (289)
                                     ..++++++.+.+.. |+.+|+..|+
T Consensus        82 ---------------~~~~~v~~~l~~~l~~g~ivv~~st  106 (296)
T 3qha_A           82 ---------------AQVREVVGELAGHAKPGTVIAIHST  106 (296)
T ss_dssp             ---------------HHHHHHHHHHHTTCCTTCEEEECSC
T ss_pred             ---------------HHHHHHHHHHHHhcCCCCEEEEeCC
Confidence                           22444556666654 5666655543

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=98.04  E-value=7.5e-06  Score=74.90  Aligned_cols=96  Identities=14%  Similarity=0.180  Sum_probs=69.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCC-----CccEEEEEeCCCchhHHhhhhcccCCceEEEEe----cCCCHHhhhCC---
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINP-----LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL----GQQQLEDALTG---  114 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g-----~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~----~t~d~~eal~~---  114 (289)
                      |||.|+||+|++|++++..|+..|     +  +|+++|++.....   +..    ..+..+.    ...++.+++++   
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~~g~~~~~~--~V~~~~r~~~~~~---~~~----~~~~~~~~Dl~d~~~~~~~~~~~~~   72 (364)
T 2v6g_A            2 SVALIVGVTGIIGNSLAEILPLADTPGGPW--KVYGVARRTRPAW---HED----NPINYVQCDISDPDDSQAKLSPLTD   72 (364)
T ss_dssp             EEEEEETTTSHHHHHHHHHTTSTTCTTCSE--EEEEEESSCCCSC---CCS----SCCEEEECCTTSHHHHHHHHTTCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCCCCce--EEEEEeCCCCccc---ccc----CceEEEEeecCCHHHHHHHHhcCCC
Confidence            689999999999999999998887     6  8999998762211   111    1122111    11235567788   


Q ss_pred             CCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC
Q 022947          115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC  154 (289)
Q Consensus       115 aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~  154 (289)
                      +|+||++||...   .+..+....|+.....+++.+.+.+
T Consensus        73 ~d~vih~a~~~~---~~~~~~~~~n~~~~~~l~~a~~~~~  109 (364)
T 2v6g_A           73 VTHVFYVTWANR---STEQENCEANSKMFRNVLDAVIPNC  109 (364)
T ss_dssp             CCEEEECCCCCC---SSHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             CCEEEECCCCCc---chHHHHHHHhHHHHHHHHHHHHHhc
Confidence            999999998652   3455678889999999999998874

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=98.04  E-value=3.2e-05  Score=69.37  Aligned_cols=134  Identities=13%  Similarity=0.070  Sum_probs=76.2

Q ss_pred             ccccccccccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhccc---CCceEEEEe-c
Q 022947           31 SGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMD---TNAVVRGFL-G  104 (289)
Q Consensus        31 ~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~---~~~~v~~~~-~  104 (289)
                      +++++.+...++..+.++|.|+||+|.+|..++..|+..|.  +|+++|++..  .....++....   ...++..+. +
T Consensus         3 ~~~~~~~~~~~~~l~~k~vlVTGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D   80 (303)
T 1yxm_A            3 SWAKGRSYLAPGLLQGQVAIVTGGATGIGKAIVKELLELGS--NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCN   80 (303)
T ss_dssp             ----CCCSBCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECC
T ss_pred             cccccCCccCcCCCCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecC
Confidence            44555555444445567999999999999999999999997  8999998752  22222332210   012233221 1


Q ss_pred             CCC---HHhhh-------CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 022947          105 QQQ---LEDAL-------TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNP  165 (289)
Q Consensus       105 t~d---~~eal-------~~aDiVIitag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tNP  165 (289)
                      -+|   +++.+       ...|+||++||......   .+   -...+..|+.....+++.+...   ...+.|++++..
T Consensus        81 ~~~~~~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~  160 (303)
T 1yxm_A           81 IRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVP  160 (303)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEee
Confidence            112   22233       35899999998643211   11   2334667777666666665442   124566666654


Q ss_pred             C
Q 022947          166 V  166 (289)
Q Consensus       166 v  166 (289)
                      .
T Consensus       161 ~  161 (303)
T 1yxm_A          161 T  161 (303)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=98.03  E-value=1.1e-05  Score=72.45  Aligned_cols=97  Identities=12%  Similarity=0.086  Sum_probs=62.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      ++|||+|||+ |.+|..++..|...++..+|+++|+++...  ..+.......  ..   +++++++++++|+||++...
T Consensus         5 ~~~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~--~~~~~~g~~~--~~---~~~~~~~~~~aDvVilavp~   76 (290)
T 3b1f_A            5 EEKTIYIAGL-GLIGASLALGIKRDHPHYKIVGYNRSDRSR--DIALERGIVD--EA---TADFKVFAALADVIILAVPI   76 (290)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSSHHHH--HHHHHTTSCS--EE---ESCTTTTGGGCSEEEECSCH
T ss_pred             ccceEEEEee-CHHHHHHHHHHHhCCCCcEEEEEcCCHHHH--HHHHHcCCcc--cc---cCCHHHhhcCCCEEEEcCCH
Confidence            4579999998 999999999888774333899999875211  1121111100  11   23555778999999998521


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHh-C-CCcEEEEecCC
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKC-C-PKAIVNLISNP  165 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~-~-p~aiviv~tNP  165 (289)
                                      ....++++.+..+ . |+.+|+.++|.
T Consensus        77 ----------------~~~~~v~~~l~~~~l~~~~ivi~~~~~  103 (290)
T 3b1f_A           77 ----------------KKTIDFIKILADLDLKEDVIITDAGST  103 (290)
T ss_dssp             ----------------HHHHHHHHHHHTSCCCTTCEEECCCSC
T ss_pred             ----------------HHHHHHHHHHHhcCCCCCCEEEECCCC
Confidence                            1235666777765 4 67777665654

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=98.02  E-value=1.1e-05  Score=69.97  Aligned_cols=99  Identities=17%  Similarity=0.145  Sum_probs=63.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCC-CccEEEEEeCCCchhHHhhhhcccCCceEEEE----ecCCCHHhhhCCCCEEE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTNAVVRGF----LGQQQLEDALTGMDIVI  119 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g-~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~----~~t~d~~eal~~aDiVI  119 (289)
                      ++++|.|+||+|++|+.++..|+..| .  +|+++++++...  .++..    ..+..+    ....+++++++++|+||
T Consensus        22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~--~V~~~~R~~~~~--~~~~~----~~~~~~~~Dl~d~~~~~~~~~~~D~vv   93 (236)
T 3qvo_A           22 HMKNVLILGAGGQIARHVINQLADKQTI--KQTLFARQPAKI--HKPYP----TNSQIIMGDVLNHAALKQAMQGQDIVY   93 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTE--EEEEEESSGGGS--CSSCC----TTEEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             cccEEEEEeCCcHHHHHHHHHHHhCCCc--eEEEEEcChhhh--ccccc----CCcEEEEecCCCHHHHHHHhcCCCEEE
Confidence            45689999999999999999999988 6  899999875211  11111    112211    11234567789999999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 022947          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       120 itag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      .++|..      ..+      ...+.+++.+++.... .||++|.
T Consensus        94 ~~a~~~------~~~------~~~~~~~~~~~~~~~~-~iV~iSS  125 (236)
T 3qvo_A           94 ANLTGE------DLD------IQANSVIAAMKACDVK-RLIFVLS  125 (236)
T ss_dssp             EECCST------THH------HHHHHHHHHHHHTTCC-EEEEECC
T ss_pred             EcCCCC------chh------HHHHHHHHHHHHcCCC-EEEEEec
Confidence            998742      111      2245677777766544 4454443

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=98.02  E-value=1.6e-05  Score=70.68  Aligned_cols=99  Identities=18%  Similarity=0.211  Sum_probs=65.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCC-c--eEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTN-A--VVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~-~--~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      |||+|||+ |.+|+.++..|+..|+  +|.++|+++....  ++...... .  .....  .++ .++++++|+||++..
T Consensus         1 m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~r~~~~~~--~l~~~~~~~~~~~~~~~--~~~-~~~~~~~d~vi~~v~   72 (291)
T 1ks9_A            1 MKITVLGC-GALGQLWLTALCKQGH--EVQGWLRVPQPYC--SVNLVETDGSIFNESLT--AND-PDFLATSDLLLVTLK   72 (291)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSEE--EEEEECTTSCEEEEEEE--ESC-HHHHHTCSEEEECSC
T ss_pred             CeEEEECc-CHHHHHHHHHHHhCCC--CEEEEEcCcccee--eEEEEcCCCceeeeeee--ecC-ccccCCCCEEEEEec
Confidence            58999998 9999999999999998  9999998762111  12111100 1  11111  124 367899999999863


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCccc
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNST  169 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~  169 (289)
                      ..                .+.++++.+..+. |+.+|+..+|..+..
T Consensus        73 ~~----------------~~~~v~~~l~~~l~~~~~vv~~~~g~~~~  103 (291)
T 1ks9_A           73 AW----------------QVSDAVKSLASTLPVTTPILLIHNGMGTI  103 (291)
T ss_dssp             GG----------------GHHHHHHHHHTTSCTTSCEEEECSSSCTT
T ss_pred             HH----------------hHHHHHHHHHhhCCCCCEEEEecCCCCcH
Confidence            21                0345566676654 678888889987653

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=98.02  E-value=4.4e-05  Score=68.23  Aligned_cols=144  Identities=17%  Similarity=0.189  Sum_probs=71.6

Q ss_pred             hhcCCCccccccccccccccccccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhccc
Q 022947           17 AHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMD   94 (289)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~   94 (289)
                      -|-|--.+..++-..|-+.|.-.-.-..+.+++.|+||+|.+|..++..|+..|.  +|++.|+++.  +....++....
T Consensus         3 ~~~~~~~~~~~~~~~g~~~m~~~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~   80 (276)
T 3r1i_A            3 HHHHHHMGTLEAQTQGPGSMSVLDLFDLSGKRALITGASTGIGKKVALAYAEAGA--QVAVAARHSDALQVVADEIAGVG   80 (276)
T ss_dssp             --------------------CGGGGGCCTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHHHTT
T ss_pred             ccccccccceeccccCCCCcccccccCCCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC
Confidence            3445455555666666666553222123346899999999999999999999997  8999999762  22223333221


Q ss_pred             CCceEEEEe-cCC---CHHhhh-------CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHH----HHHHHHHHHHh
Q 022947           95 TNAVVRGFL-GQQ---QLEDAL-------TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKC  153 (289)
Q Consensus        95 ~~~~v~~~~-~t~---d~~eal-------~~aDiVIitag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~i~~~  153 (289)
                        .++..+. +-+   +.++.+       ...|++|.+||......   .+   -...+..|+..    .+.+.+.+.+.
T Consensus        81 --~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~  158 (276)
T 3r1i_A           81 --GKALPIRCDVTQPDQVRGMLDQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQ  158 (276)
T ss_dssp             --CCCEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred             --CeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence              1111111 111   222333       38999999999754221   11   12334556544    45555555555


Q ss_pred             CCCcEEEEecC
Q 022947          154 CPKAIVNLISN  164 (289)
Q Consensus       154 ~p~aiviv~tN  164 (289)
                      ...+.|++++.
T Consensus       159 ~~~g~iv~isS  169 (276)
T 3r1i_A          159 GLGGTIITTAS  169 (276)
T ss_dssp             TSCEEEEEECC
T ss_pred             CCCcEEEEECc
Confidence            44466777654

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=98.02  E-value=6.5e-05  Score=65.60  Aligned_cols=143  Identities=14%  Similarity=0.158  Sum_probs=80.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal-------  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++...  ...+..+. +-+|   .++.+       
T Consensus         9 ~k~vlITGas~giG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (253)
T 3qiv_A            9 NKVGIVTGSGGGIGQAYAEALAREGA--AVVVADINAEAAEAVAKQIVAD--GGTAISVAVDVSDPESAKAMADRTLAEF   84 (253)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999997  8999999762  2222233221  12222221 1112   22222       


Q ss_pred             CCCCEEEEcCCCCCC--C----CCc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHH
Q 022947          113 TGMDIVIIPAGVPRK--P----GMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKK  179 (289)
Q Consensus       113 ~~aDiVIitag~~~~--~----g~~---r~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~  179 (289)
                      ...|++|.+||....  .    ..+   -.+.+..|+..    .+.+.+.+.+.. .+.|+++|....            
T Consensus        85 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~------------  151 (253)
T 3qiv_A           85 GGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRG-GGAIVNQSSTAA------------  151 (253)
T ss_dssp             SCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECC---------------
T ss_pred             CCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CCEEEEECCccc------------
Confidence            389999999987311  0    112   23456677666    566666666554 566666665331            


Q ss_pred             hCCCCCCcEEEeeeccHHHHHHHHHHHcC
Q 022947          180 VGTYDPKRLLGVTMLDVVRANTFVAEVLG  208 (289)
Q Consensus       180 ~~~~~~~kviG~t~lds~R~~~~lA~~l~  208 (289)
                         +++...++.+......+-+.++++++
T Consensus       152 ---~~~~~~Y~asK~a~~~~~~~la~e~~  177 (253)
T 3qiv_A          152 ---WLYSNYYGLAKVGINGLTQQLSRELG  177 (253)
T ss_dssp             -----------CCHHHHHHHHHHHHHHTT
T ss_pred             ---cCCCchhHHHHHHHHHHHHHHHHHHh
Confidence               12233456654444456677888874

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=98.02  E-value=1.3e-05  Score=68.43  Aligned_cols=99  Identities=20%  Similarity=0.249  Sum_probs=63.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhH--HhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~--~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      |||+||||+|.+|+.++..|+..|+  +|.++|+++....  ..++........+..    ++++++++++|+||++...
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~D~Vi~~~~~   74 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGH--EIVVGSRREEKAEAKAAEYRRIAGDASITG----MKNEDAAEACDIAVLTIPW   74 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSHHHHHHHHHHHHHHHSSCCEEE----EEHHHHHHHCSEEEECSCH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhccccccCCCCh----hhHHHHHhcCCEEEEeCCh
Confidence            5899999449999999999998887  8999998752111  111110000012321    2566889999999998631


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd  167 (289)
                                      ..++++++.+.+..++.+++.++|+.+
T Consensus        75 ----------------~~~~~~~~~l~~~~~~~~vi~~~~g~~  101 (212)
T 1jay_A           75 ----------------EHAIDTARDLKNILREKIVVSPLVPVS  101 (212)
T ss_dssp             ----------------HHHHHHHHHTHHHHTTSEEEECCCCEE
T ss_pred             ----------------hhHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence                            112334444443335788888899876

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=98.02  E-value=3e-05  Score=69.12  Aligned_cols=97  Identities=13%  Similarity=0.170  Sum_probs=62.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhC-CCCEEEEcCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT-GMDIVIIPAGV  124 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~-~aDiVIitag~  124 (289)
                      ++||+|||+ |.+|..++..|...|+..+|+++|+++....  .+.......  ..   +++++++++ ++|+||++...
T Consensus         1 m~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~--~~~~~g~~~--~~---~~~~~~~~~~~aDvVilavp~   72 (281)
T 2g5c_A            1 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESIS--KAVDLGIID--EG---TTSIAKVEDFSPDFVMLSSPV   72 (281)
T ss_dssp             CCEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHH--HHHHTTSCS--EE---ESCGGGGGGTCCSEEEECSCH
T ss_pred             CcEEEEEec-CHHHHHHHHHHHhcCCCcEEEEEeCCHHHHH--HHHHCCCcc--cc---cCCHHHHhcCCCCEEEEcCCH
Confidence            369999998 9999999999998886448999998752111  111111111  11   235667888 99999998521


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCCC
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPV  166 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~-~p~aiviv~tNPv  166 (289)
                                      ....++++.+..+ .|+++|+.++|..
T Consensus        73 ----------------~~~~~v~~~l~~~l~~~~iv~~~~~~~   99 (281)
T 2g5c_A           73 ----------------RTFREIAKKLSYILSEDATVTDQGSVK   99 (281)
T ss_dssp             ----------------HHHHHHHHHHHHHSCTTCEEEECCSCC
T ss_pred             ----------------HHHHHHHHHHHhhCCCCcEEEECCCCc
Confidence                            1123455555554 3677777766643

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=98.01  E-value=1.2e-05  Score=73.07  Aligned_cols=112  Identities=17%  Similarity=0.136  Sum_probs=69.8

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCceEEEEe-cCC---CHHhhhC--CCCEE
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQ---QLEDALT--GMDIV  118 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~~-~t~---d~~eal~--~aDiV  118 (289)
                      |||.|+||+|++|++++..|+..|+  +|+++|+..  ......++.... ...+..+. +-.   ++.++++  +.|+|
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~D~v   77 (338)
T 1udb_A            1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVIILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRNEALMTEILHDHAIDTV   77 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTTHHHHHHHHH-TSCCEEEECCTTCHHHHHHHHHHTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecCCCcchhHHHHHHhhc-CCcceEEEccCCCHHHHHHHhhccCCCEE
Confidence            5899999999999999999999997  899998643  111111121110 01111111 111   2334454  59999


Q ss_pred             EEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEE
Q 022947          119 IIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL  161 (289)
Q Consensus       119 Iitag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv  161 (289)
                      |++||.....  .....+.+..|+.....+++.+++.....+|.+
T Consensus        78 ih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~  122 (338)
T 1udb_A           78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFS  122 (338)
T ss_dssp             EECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             EECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence            9999864211  012345678899999999999887754444433

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=98.00  E-value=4.8e-06  Score=70.20  Aligned_cols=104  Identities=16%  Similarity=0.202  Sum_probs=67.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhh---CCCCEEEEc
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL---TGMDIVIIP  121 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal---~~aDiVIit  121 (289)
                      ++|||.|+||+|++|+.++..|+ .|.  +|+++|+++. ....|+.+..            ++++.+   ...|+||++
T Consensus         2 ~kM~vlVtGasg~iG~~~~~~l~-~g~--~V~~~~r~~~-~~~~D~~~~~------------~~~~~~~~~~~~d~vi~~   65 (202)
T 3d7l_A            2 NAMKILLIGASGTLGSAVKERLE-KKA--EVITAGRHSG-DVTVDITNID------------SIKKMYEQVGKVDAIVSA   65 (202)
T ss_dssp             CSCEEEEETTTSHHHHHHHHHHT-TTS--EEEEEESSSS-SEECCTTCHH------------HHHHHHHHHCCEEEEEEC
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHH-CCC--eEEEEecCcc-ceeeecCCHH------------HHHHHHHHhCCCCEEEEC
Confidence            34689999999999999999998 887  8999998752 1112332211            122333   358999999


Q ss_pred             CCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHhCC-CcEEEEecC
Q 022947          122 AGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISN  164 (289)
Q Consensus       122 ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~~p-~aiviv~tN  164 (289)
                      ||......   .+   ..+.+..|+.....+++.+.+.-. .+.++++|.
T Consensus        66 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS  115 (202)
T 3d7l_A           66 TGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTG  115 (202)
T ss_dssp             CCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECC
T ss_pred             CCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcc
Confidence            98653221   11   123456787777777777766521 256666654

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=98.00  E-value=3.4e-05  Score=68.91  Aligned_cols=135  Identities=18%  Similarity=0.139  Sum_probs=76.3

Q ss_pred             ccccccccccccccccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEE
Q 022947           25 QIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGF  102 (289)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~  102 (289)
                      .--.+..+|..+.....-..+.+++.|+||+|.+|..++..|+..|.  +|++.|+++.  .....++....  ..+..+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~   87 (275)
T 4imr_A           12 DLGTENLYFQSMRLETIFGLRGRTALVTGSSRGIGAAIAEGLAGAGA--HVILHGVKPGSTAAVQQRIIASG--GTAQEL   87 (275)
T ss_dssp             ------CCSCTTSHHHHHCCTTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSTTTTHHHHHHHHHTT--CCEEEE
T ss_pred             CccccccccccccccccCCCCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CeEEEE
Confidence            44567778877654433223456899999999999999999999997  8999999872  22233333221  122221


Q ss_pred             e----cCCCHHhhh------CCCCEEEEcCCCCCCCC---Cch---hhHHHhhHHH----HHHHHHHHHHhCCCcEEEEe
Q 022947          103 L----GQQQLEDAL------TGMDIVIIPAGVPRKPG---MTR---DDLFNINAGI----VKTLCEGIAKCCPKAIVNLI  162 (289)
Q Consensus       103 ~----~t~d~~eal------~~aDiVIitag~~~~~g---~~r---~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~  162 (289)
                      .    ...+.++.+      ...|++|.+||......   .+.   ...+..|+..    .+.+.+.+.+. ..+.|+++
T Consensus        88 ~~Dv~~~~~~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~Iv~i  166 (275)
T 4imr_A           88 AGDLSEAGAGTDLIERAEAIAPVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVAR-KWGRVVSI  166 (275)
T ss_dssp             ECCTTSTTHHHHHHHHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEE
T ss_pred             EecCCCHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEE
Confidence            1    111222222      37899999999753221   121   2345566554    44444545544 35667766


Q ss_pred             cC
Q 022947          163 SN  164 (289)
Q Consensus       163 tN  164 (289)
                      |.
T Consensus       167 sS  168 (275)
T 4imr_A          167 GS  168 (275)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=97.99  E-value=1.9e-05  Score=79.41  Aligned_cols=115  Identities=18%  Similarity=0.083  Sum_probs=72.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe----cCCCHHhhhC--CCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL----GQQQLEDALT--GMD  116 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~----~t~d~~eal~--~aD  116 (289)
                      ++++|.|+||+|++|++++..|+..|.  +|+++|+...  .....++.... ...+..+.    ...++.++++  ++|
T Consensus        10 ~~~~ilVTGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~~~D   86 (699)
T 1z45_A           10 TSKIVLVTGGAGYIGSHTVVELIENGY--DCVVADNLSNSTYDSVARLEVLT-KHHIPFYEVDLCDRKGLEKVFKEYKID   86 (699)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTHHHHHHHHHH-TSCCCEEECCTTCHHHHHHHHHHSCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCcchHHHHHHHhhcc-CCceEEEEcCCCCHHHHHHHHHhCCCC
Confidence            356999999999999999999999997  9999998652  11111221110 01111111    1123445566  899


Q ss_pred             EEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEe
Q 022947          117 IVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI  162 (289)
Q Consensus       117 iVIitag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~  162 (289)
                      +||++||.....  .....+.+..|+.....+++.+++.....+|.+.
T Consensus        87 ~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~iV~~S  134 (699)
T 1z45_A           87 SVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSS  134 (699)
T ss_dssp             EEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred             EEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEC
Confidence            999999864211  0122456788999999999998887644444433

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=97.99  E-value=6.6e-05  Score=67.14  Aligned_cols=141  Identities=15%  Similarity=0.173  Sum_probs=69.4

Q ss_pred             hcCCCccccccccccccccccccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-c--hhHHhhhhccc
Q 022947           18 HLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGVTADISHMD   94 (289)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~--~g~~~DL~~~~   94 (289)
                      |.||-..+-.-+..+|.+|.-.+    +.+++.|+||+|.+|..++..|+..|.  +|+++|.+. .  .....++....
T Consensus         5 ~~~~~~~~~~~~n~~~~~mm~~~----~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~   78 (280)
T 4da9_A            5 HHHSSGVDLGTENLYFQSMMTQK----ARPVAIVTGGRRGIGLGIARALAASGF--DIAITGIGDAEGVAPVIAELSGLG   78 (280)
T ss_dssp             ------------------CCSCC----CCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCHHHHHHHHHHHHHTT
T ss_pred             ccCcccccccccchhhhhhhhcc----CCCEEEEecCCCHHHHHHHHHHHHCCC--eEEEEeCCCHHHHHHHHHHHHhcC
Confidence            45666666666777777765333    245799999999999999999999998  899999754 1  22223333221


Q ss_pred             CCceEEEEe----cCCCHHhhh-------CCCCEEEEcCCCCC---CC--CCc---hhhHHHhhHHH----HHHHHHHHH
Q 022947           95 TNAVVRGFL----GQQQLEDAL-------TGMDIVIIPAGVPR---KP--GMT---RDDLFNINAGI----VKTLCEGIA  151 (289)
Q Consensus        95 ~~~~v~~~~----~t~d~~eal-------~~aDiVIitag~~~---~~--g~~---r~d~~~~N~~i----~~~i~~~i~  151 (289)
                        .++..+.    ...+.++.+       ...|++|.+||...   .+  ..+   -...+..|+..    .+.+.+.+.
T Consensus        79 --~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~  156 (280)
T 4da9_A           79 --ARVIFLRADLADLSSHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAML  156 (280)
T ss_dssp             --CCEEEEECCTTSGGGHHHHHHHHHHHHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred             --CcEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence              2222211    112233333       38899999999731   11  111   22344556554    455555555


Q ss_pred             HhCC--CcEEEEecCCC
Q 022947          152 KCCP--KAIVNLISNPV  166 (289)
Q Consensus       152 ~~~p--~aiviv~tNPv  166 (289)
                      +...  .+.|+++|...
T Consensus       157 ~~~~~~~g~Iv~isS~~  173 (280)
T 4da9_A          157 ASDARASRSIINITSVS  173 (280)
T ss_dssp             HHCCCCCEEEEEECCC-
T ss_pred             HhCCCCCCEEEEEcchh
Confidence            5442  56677766543

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.99  E-value=3.1e-05  Score=60.96  Aligned_cols=73  Identities=23%  Similarity=0.247  Sum_probs=44.9

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCC---HH-hhhCCCCEEE
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ---LE-DALTGMDIVI  119 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d---~~-eal~~aDiVI  119 (289)
                      ++.|||+|+|+ |.+|..++..|...|.  +|+++|.++..  ...+.... ..... .....+   +. ..++++|+||
T Consensus         2 ~~~m~i~IiG~-G~iG~~~a~~L~~~g~--~v~~~d~~~~~--~~~~~~~~-~~~~~-~~d~~~~~~l~~~~~~~~d~vi   74 (140)
T 1lss_A            2 SHGMYIIIAGI-GRVGYTLAKSLSEKGH--DIVLIDIDKDI--CKKASAEI-DALVI-NGDCTKIKTLEDAGIEDADMYI   74 (140)
T ss_dssp             ---CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHH--HHHHHHHC-SSEEE-ESCTTSHHHHHHTTTTTCSEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHH--HHHHHHhc-CcEEE-EcCCCCHHHHHHcCcccCCEEE
Confidence            34579999998 9999999999998887  89999987521  11122110 11111 111112   22 2268999999


Q ss_pred             EcCC
Q 022947          120 IPAG  123 (289)
Q Consensus       120 itag  123 (289)
                      ++.+
T Consensus        75 ~~~~   78 (140)
T 1lss_A           75 AVTG   78 (140)
T ss_dssp             ECCS
T ss_pred             EeeC
Confidence            9864

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=97.98  E-value=1.6e-05  Score=71.07  Aligned_cols=138  Identities=13%  Similarity=0.086  Sum_probs=68.7

Q ss_pred             cCCCccccccccccccccccccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCC
Q 022947           19 LHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTN   96 (289)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~   96 (289)
                      -|..-+...-...+|.+|..     .+.+++.|+||+|.+|..++..|+..|.  +|++.|++..  .....++..   .
T Consensus         6 ~~~~~~~~~~~~~~~~~m~~-----~~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~---~   75 (272)
T 4dyv_A            6 HHSSGVDLGTENLYFQSMSK-----TGKKIAIVTGAGSGVGRAVAVALAGAGY--GVALAGRRLDALQETAAEIGD---D   75 (272)
T ss_dssp             ---------------------------CCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTS---C
T ss_pred             cccccccCCcceeehhhhcC-----CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCC---C
Confidence            34433333334555555542     2235788999999999999999999997  8999998762  222222211   0


Q ss_pred             ceEEE--EecCCCHHhh-------hCCCCEEEEcCCCCCCCC----Cc---hhhHHHhhHHH----HHHHHHHHHHhC-C
Q 022947           97 AVVRG--FLGQQQLEDA-------LTGMDIVIIPAGVPRKPG----MT---RDDLFNINAGI----VKTLCEGIAKCC-P  155 (289)
Q Consensus        97 ~~v~~--~~~t~d~~ea-------l~~aDiVIitag~~~~~g----~~---r~d~~~~N~~i----~~~i~~~i~~~~-p  155 (289)
                      .....  ++...+.++.       +...|++|.+||.....+    .+   -.+.+..|+..    .+.+.+.+.+.. +
T Consensus        76 ~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~  155 (272)
T 4dyv_A           76 ALCVPTDVTDPDSVRALFTATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPR  155 (272)
T ss_dssp             CEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSC
T ss_pred             eEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCC
Confidence            11110  0111122222       238999999999743211    11   13355666555    555556665554 2


Q ss_pred             CcEEEEecCCC
Q 022947          156 KAIVNLISNPV  166 (289)
Q Consensus       156 ~aiviv~tNPv  166 (289)
                      .+.|+++|.-.
T Consensus       156 ~g~IV~isS~~  166 (272)
T 4dyv_A          156 GGRIINNGSIS  166 (272)
T ss_dssp             CEEEEEECCSS
T ss_pred             CcEEEEECchh
Confidence            57777776543

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=97.98  E-value=4.5e-05  Score=66.95  Aligned_cols=115  Identities=18%  Similarity=0.220  Sum_probs=70.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEe-cCC---CHHhhhC-------C
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQ---QLEDALT-------G  114 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~-~t~---d~~eal~-------~  114 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+++......++....  .++..+. +-+   ++++.++       +
T Consensus         4 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   79 (255)
T 2q2v_A            4 GKTALVTGSTSGIGLGIAQVLARAGA--NIVLNGFGDPAPALAEIARHG--VKAVHHPADLSDVAQIEALFALAEREFGG   79 (255)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHHHTTS--CCEEEECCCTTSHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHhcC--CceEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            45899999999999999999999997  899999876422223332211  1222211 111   2333344       8


Q ss_pred             CCEEEEcCCCCCCCC---Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecCC
Q 022947          115 MDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       115 aDiVIitag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tNP  165 (289)
                      .|++|.+||......   .+   ....+..|+.    ..+.+.+.+++.. .+.|+++|..
T Consensus        80 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~g~iv~isS~  139 (255)
T 2q2v_A           80 VDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARN-WGRIINIASV  139 (255)
T ss_dssp             CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCG
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEcCc
Confidence            999999999753211   11   2335666766    5666666666543 4566666543

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=97.98  E-value=8.9e-06  Score=73.42  Aligned_cols=78  Identities=19%  Similarity=0.234  Sum_probs=51.2

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-c---hhHHh---hhhcccCCceEEE--EecCCCHHhhhCC
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T---PGVTA---DISHMDTNAVVRG--FLGQQQLEDALTG  114 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~---~g~~~---DL~~~~~~~~v~~--~~~t~d~~eal~~  114 (289)
                      +++|||.|+||+|++|++++..|+..|+  +|++++++. .   .....   ++...  ...+..  +....++.+++++
T Consensus         2 ~~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~l~~~~~~--~v~~v~~D~~d~~~l~~a~~~   77 (321)
T 3c1o_A            2 SHMEKIIIYGGTGYIGKFMVRASLSFSH--PTFIYARPLTPDSTPSSVQLREEFRSM--GVTIIEGEMEEHEKMVSVLKQ   77 (321)
T ss_dssp             --CCCEEEETTTSTTHHHHHHHHHHTTC--CEEEEECCCCTTCCHHHHHHHHHHHHT--TCEEEECCTTCHHHHHHHHTT
T ss_pred             CcccEEEEEcCCchhHHHHHHHHHhCCC--cEEEEECCcccccChHHHHHHHHhhcC--CcEEEEecCCCHHHHHHHHcC
Confidence            4567999999999999999999999886  899999875 1   11111   12111  111111  1111246678999


Q ss_pred             CCEEEEcCCCC
Q 022947          115 MDIVIIPAGVP  125 (289)
Q Consensus       115 aDiVIitag~~  125 (289)
                      +|+||++++..
T Consensus        78 ~d~vi~~a~~~   88 (321)
T 3c1o_A           78 VDIVISALPFP   88 (321)
T ss_dssp             CSEEEECCCGG
T ss_pred             CCEEEECCCcc
Confidence            99999998753

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=97.96  E-value=3.5e-06  Score=78.09  Aligned_cols=115  Identities=13%  Similarity=-0.058  Sum_probs=70.4

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchh---HHhhhhccc--CCc-eEEEEec-C---CCHHhhhCC--
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMD--TNA-VVRGFLG-Q---QQLEDALTG--  114 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g---~~~DL~~~~--~~~-~v~~~~~-t---~d~~eal~~--  114 (289)
                      ++|.|+||+|++|++++..|+..|.  +|+++|++....   ...++....  ... .+..+.+ -   .++.+++++  
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~  106 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGY--EVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIK  106 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC--EEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhcC
Confidence            5899999999999999999999997  999999875211   111111000  001 2332211 1   124455665  


Q ss_pred             CCEEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCC----CcEEEEec
Q 022947          115 MDIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCP----KAIVNLIS  163 (289)
Q Consensus       115 aDiVIitag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p----~aiviv~t  163 (289)
                      .|+||++||.....  ..+..+.+..|+.....+++.+.+...    .+.++++|
T Consensus       107 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~S  161 (381)
T 1n7h_A          107 PDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAG  161 (381)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_pred             CCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeC
Confidence            59999999864321  012344567788888888888877542    34666554

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=97.95  E-value=5.9e-06  Score=72.69  Aligned_cols=154  Identities=14%  Similarity=0.071  Sum_probs=84.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhH----HhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV----TADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~----~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      ++|.|+||+|.+|..++..|+..|.  +|+++|+++....    ..|+.+..   .+...  ..+..+.+...|++|.+|
T Consensus        23 k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~d~~d~~---~v~~~--~~~~~~~~g~iD~li~~A   95 (251)
T 3orf_A           23 KNILVLGGSGALGAEVVKFFKSKSW--NTISIDFRENPNADHSFTIKDSGEE---EIKSV--IEKINSKSIKVDTFVCAA   95 (251)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCTTSSEEEECSCSSHH---HHHHH--HHHHHTTTCCEEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCcccccccceEEEeCCHH---HHHHH--HHHHHHHcCCCCEEEECC
Confidence            4789999999999999999999997  8999999872111    11111100   00000  001112234679999999


Q ss_pred             CCCCCC----CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeec
Q 022947          123 GVPRKP----GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTML  194 (289)
Q Consensus       123 g~~~~~----g~~---r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t~l  194 (289)
                      |.....    ..+   -.+.+..|+.....+.+.+...- +.+.|+++|.....            .+.+..-.++.+..
T Consensus        96 g~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~------------~~~~~~~~Y~~sKa  163 (251)
T 3orf_A           96 GGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAAL------------NRTSGMIAYGATKA  163 (251)
T ss_dssp             CCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG------------SCCTTBHHHHHHHH
T ss_pred             ccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhc------------cCCCCCchhHHHHH
Confidence            964321    111   23456678877777777766653 35677776643321            12333223333322


Q ss_pred             cHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          195 DVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       195 ds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                      ....+-+.+++.++..+..|++.++
T Consensus       164 a~~~~~~~la~e~~~~~~gi~v~~v  188 (251)
T 3orf_A          164 ATHHIIKDLASENGGLPAGSTSLGI  188 (251)
T ss_dssp             HHHHHHHHHTSTTSSSCTTCEEEEE
T ss_pred             HHHHHHHHHHHHhcccCCCcEEEEE
Confidence            2233445555555433556665544

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=97.95  E-value=1.5e-05  Score=72.20  Aligned_cols=68  Identities=16%  Similarity=0.131  Sum_probs=48.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      ++|||+|||+ |.+|..++..|+..|+  +|.++|+++..  ..++.....  .. .   ++++++++++||+||++..
T Consensus         6 ~~~~I~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~--~~~~~~~g~--~~-~---~~~~~e~~~~aDvvi~~vp   73 (303)
T 3g0o_A            6 TDFHVGIVGL-GSMGMGAARSCLRAGL--STWGADLNPQA--CANLLAEGA--CG-A---AASAREFAGVVDALVILVV   73 (303)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHHTTC--SE-E---ESSSTTTTTTCSEEEECCS
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC--eEEEEECCHHH--HHHHHHcCC--cc-c---cCCHHHHHhcCCEEEEECC
Confidence            3579999998 9999999999999998  99999987521  122222211  11 1   2355688999999999863

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=97.94  E-value=8.9e-05  Score=66.04  Aligned_cols=131  Identities=18%  Similarity=0.224  Sum_probs=77.0

Q ss_pred             ccccccccccccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-c--hhHHhhhhcccCCceEEEEe-c
Q 022947           29 ESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGVTADISHMDTNAVVRGFL-G  104 (289)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~--~g~~~DL~~~~~~~~v~~~~-~  104 (289)
                      ...||.+|.-...  .+.+++.|+||+|.+|..++..|+..|.  +|++.|.+. .  +....++....  .++..+. +
T Consensus        16 ~~~~~~~mm~~~~--l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D   89 (271)
T 3v2g_A           16 ENLYFQSMMTSIS--LAGKTAFVTGGSRGIGAAIAKRLALEGA--AVALTYVNAAERAQAVVSEIEQAG--GRAVAIRAD   89 (271)
T ss_dssp             ----CHHHHTTTC--CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECC
T ss_pred             cccchhhhccccC--CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEECC
Confidence            4557777644322  3456899999999999999999999998  899998765 1  22223333221  1222211 1


Q ss_pred             CCC---HHhhhC-------CCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 022947          105 QQQ---LEDALT-------GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNP  165 (289)
Q Consensus       105 t~d---~~eal~-------~aDiVIitag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNP  165 (289)
                      -+|   .++.++       ..|++|.+||......   .+   -...+..|+.....+.+.+...- ..+.|++++..
T Consensus        90 v~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~  167 (271)
T 3v2g_A           90 NRDAEAIEQAIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSN  167 (271)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCG
T ss_pred             CCCHHHHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeCh
Confidence            122   222333       8899999999753221   11   23456678777666666666553 45677776553

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=97.93  E-value=1.4e-05  Score=71.81  Aligned_cols=66  Identities=15%  Similarity=0.185  Sum_probs=49.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      |+||+|||+ |.+|..++..|+..|+  +|.++|+++....  ++....    +..   ++++++++++||+||++..
T Consensus         1 M~~I~iiG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~~~--~~~~~g----~~~---~~~~~~~~~~advvi~~v~   66 (287)
T 3pdu_A            1 MTTYGFLGL-GIMGGPMAANLVRAGF--DVTVWNRNPAKCA--PLVALG----ARQ---ASSPAEVCAACDITIAMLA   66 (287)
T ss_dssp             CCCEEEECC-STTHHHHHHHHHHHTC--CEEEECSSGGGGH--HHHHHT----CEE---CSCHHHHHHHCSEEEECCS
T ss_pred             CCeEEEEcc-CHHHHHHHHHHHHCCC--eEEEEcCCHHHHH--HHHHCC----Cee---cCCHHHHHHcCCEEEEEcC
Confidence            468999998 9999999999999897  8999999763211  122211    121   3467788999999999863

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=97.93  E-value=3.5e-05  Score=70.11  Aligned_cols=67  Identities=16%  Similarity=0.208  Sum_probs=49.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      +++||+|||. |.+|..++..|+..|+  +|.++|+++..  ..++....    ...   .+++++++++||+||++..
T Consensus         8 ~~~~IgiIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~--~~~~~~~g----~~~---~~~~~e~~~~aDvVi~~vp   74 (306)
T 3l6d_A            8 FEFDVSVIGL-GAMGTIMAQVLLKQGK--RVAIWNRSPGK--AAALVAAG----AHL---CESVKAALSASPATIFVLL   74 (306)
T ss_dssp             CSCSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHH--HHHHHHHT----CEE---CSSHHHHHHHSSEEEECCS
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHCC----Cee---cCCHHHHHhcCCEEEEEeC
Confidence            3579999998 9999999999999998  89999987621  12222211    111   3467788999999999853

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=97.92  E-value=3.8e-05  Score=76.91  Aligned_cols=169  Identities=14%  Similarity=0.055  Sum_probs=96.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhC-CCccEEEEEeCCCchhHHhhhhcccCCceEEEEec-CCC----HHhhhCCCCEE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQ----LEDALTGMDIV  118 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~-g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~-t~d----~~eal~~aDiV  118 (289)
                      ++|+|.|+||+|++|++++..|+.. |+  +|+++|++....  .++..   ...+..+.+ -.|    ++++++++|+|
T Consensus       314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g~--~V~~~~r~~~~~--~~~~~---~~~v~~v~~Dl~d~~~~~~~~~~~~D~V  386 (660)
T 1z7e_A          314 RRTRVLILGVNGFIGNHLTERLLREDHY--EVYGLDIGSDAI--SRFLN---HPHFHFVEGDISIHSEWIEYHVKKCDVV  386 (660)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHSSSE--EEEEEESCCTTT--GGGTT---CTTEEEEECCTTTCHHHHHHHHHHCSEE
T ss_pred             cCceEEEEcCCcHHHHHHHHHHHhcCCC--EEEEEEcCchhh--hhhcc---CCceEEEECCCCCcHHHHHHhhcCCCEE
Confidence            4578999999999999999999887 66  899999876211  11111   112222211 111    34567899999


Q ss_pred             EEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCC-------CCCCcEE
Q 022947          119 IIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT-------YDPKRLL  189 (289)
Q Consensus       119 Iitag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~-------~~~~kvi  189 (289)
                      |++||.....  ..+..+.+..|+.....+++.+.+..  ..++++|... +....-...+.+...       .++...+
T Consensus       387 ih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~--~r~V~~SS~~-vyg~~~~~~~~E~~~~~~~~p~~~p~~~Y  463 (660)
T 1z7e_A          387 LPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR--KRIIFPSTSE-VYGMCSDKYFDEDHSNLIVGPVNKPRWIY  463 (660)
T ss_dssp             EECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTT--CEEEEECCGG-GGBTCCSSSBCTTTCCEEECCTTCTTHHH
T ss_pred             EECceecCccccccCHHHHHHhhhHHHHHHHHHHHHhC--CEEEEEecHH-HcCCCCCcccCCCccccccCcccCCCCCc
Confidence            9999865321  11234567788999999999988876  4555555321 100000000000000       0111233


Q ss_pred             EeeeccHHHHHHHHHHHcCCCCccee-eeEEcccC
Q 022947          190 GVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (289)
Q Consensus       190 G~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg  223 (289)
                      |.+.....++-..+++..|++..-++ +.|+|...
T Consensus       464 ~~sK~~~E~~~~~~~~~~gi~~~ilRpg~v~Gp~~  498 (660)
T 1z7e_A          464 SVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRL  498 (660)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCEEEEEECSEESTTS
T ss_pred             HHHHHHHHHHHHHHHHHcCCCEEEECCCcccCCCc
Confidence            44444344455555666788877777 55888653

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=97.92  E-value=4.5e-05  Score=66.64  Aligned_cols=115  Identities=17%  Similarity=0.203  Sum_probs=67.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal-------  112 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|++..  .....++....  .++..+. +-+|   +++++       
T Consensus        13 ~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   88 (260)
T 3awd_A           13 NRVAIVTGGAQNIGLACVTALAEAGA--RVIIADLDEAMATKAVEDLRMEG--HDVSSVVMDVTNTESVQNAVRSVHEQE   88 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999997  8999998762  12222332211  1222221 1122   22333       


Q ss_pred             CCCCEEEEcCCCCC-C-C--CCc---hhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 022947          113 TGMDIVIIPAGVPR-K-P--GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (289)
Q Consensus       113 ~~aDiVIitag~~~-~-~--g~~---r~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tN  164 (289)
                      ...|+||++||... . +  ..+   ..+.+..|+.....+++.+.++   ...+.++++|.
T Consensus        89 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS  150 (260)
T 3awd_A           89 GRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGS  150 (260)
T ss_dssp             SCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEec
Confidence            37899999998653 1 1  112   1334566766555555544432   23456666654

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=97.92  E-value=1.1e-05  Score=73.74  Aligned_cols=92  Identities=20%  Similarity=0.152  Sum_probs=61.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-c-hhHHh---hhhcccCCceEEE--EecCCCHHhhhC--CCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T-PGVTA---DISHMDTNAVVRG--FLGQQQLEDALT--GMD  116 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~-~g~~~---DL~~~~~~~~v~~--~~~t~d~~eal~--~aD  116 (289)
                      ++||.|+||+|++|++++..|+..|+  +|++++++. . .....   ++...  ...+..  +....++.++++  ++|
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~~~~l~~~--~v~~~~~Dl~d~~~l~~~~~~~~~d   85 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHR--PTYILARPGPRSPSKAKIFKALEDK--GAIIVYGLINEQEAMEKILKEHEID   85 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTC--CEEEEECSSCCCHHHHHHHHHHHHT--TCEEEECCTTCHHHHHHHHHHTTCC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCC--CEEEEECCCCCChhHHHHHHHHHhC--CcEEEEeecCCHHHHHHHHhhCCCC
Confidence            46899999999999999999999886  899999876 1 11211   22211  111111  111224567788  999


Q ss_pred             EEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC
Q 022947          117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC  154 (289)
Q Consensus       117 iVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~  154 (289)
                      +||++++..             |+...+.+++.+++..
T Consensus        86 ~Vi~~a~~~-------------n~~~~~~l~~aa~~~g  110 (346)
T 3i6i_A           86 IVVSTVGGE-------------SILDQIALVKAMKAVG  110 (346)
T ss_dssp             EEEECCCGG-------------GGGGHHHHHHHHHHHC
T ss_pred             EEEECCchh-------------hHHHHHHHHHHHHHcC
Confidence            999998752             5566677888888776

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=97.91  E-value=3.7e-05  Score=66.90  Aligned_cols=114  Identities=18%  Similarity=0.207  Sum_probs=67.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCC---CHHhhhC------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQ---QLEDALT------  113 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~---d~~eal~------  113 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++....  ..+..+. +-.   ++++.++      
T Consensus        11 ~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   86 (255)
T 1fmc_A           11 GKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISKL   86 (255)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHHhC--CceEEEEcCCCCHHHHHHHHHHHHHhc
Confidence            46899999999999999999999997  8999998762  22222332211  1222211 111   2333333      


Q ss_pred             -CCCEEEEcCCCCCCC--CCc---hhhHHHhhHHHHHHHHHHH----HHhCCCcEEEEecC
Q 022947          114 -GMDIVIIPAGVPRKP--GMT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISN  164 (289)
Q Consensus       114 -~aDiVIitag~~~~~--g~~---r~d~~~~N~~i~~~i~~~i----~~~~p~aiviv~tN  164 (289)
                       +.|+||++||.....  ..+   ..+.+..|+.....+.+.+    ++. ..+.|+++|.
T Consensus        87 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~~iv~~sS  146 (255)
T 1fmc_A           87 GKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKN-GGGVILTITS  146 (255)
T ss_dssp             SSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcc
Confidence             899999999865321  112   2345566766655554444    343 3456666654

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=97.91  E-value=9.3e-05  Score=64.22  Aligned_cols=115  Identities=12%  Similarity=0.092  Sum_probs=67.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal-------  112 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++...   ..+..+. +-.|   +.+.+       
T Consensus         6 ~k~vlVtGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (251)
T 1zk4_A            6 GKVAIITGGTLGIGLAIATKFVEEGA--KVMITGRHSDVGEKAAKSVGTP---DQIQFFQHDSSDEDGWTKLFDATEKAF   80 (251)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhcc---CceEEEECCCCCHHHHHHHHHHHHHHh
Confidence            45899999999999999999999997  8999998752  1111222211   1222211 1112   22222       


Q ss_pred             CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecCC
Q 022947          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       113 ~~aDiVIitag~~~~~---g~~---r~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tNP  165 (289)
                      ...|+||++||.....   ..+   ....+..|+.    ..+.+.+.+++....+.|+++|..
T Consensus        81 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~  143 (251)
T 1zk4_A           81 GPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSI  143 (251)
T ss_dssp             SSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCG
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCc
Confidence            3589999999875321   111   2345667766    444455555443322567766643

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=97.91  E-value=1e-05  Score=70.97  Aligned_cols=101  Identities=18%  Similarity=0.210  Sum_probs=67.8

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEE-EecCCCHHhhhCC--CCEEEEcCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTG--MDIVIIPAG  123 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~eal~~--aDiVIitag  123 (289)
                      |||.|+||+|++|++++..|+. +.  +|+++++++...  .       .  +.. .....++.+++++  +|+||++||
T Consensus         1 m~ilVtGatG~iG~~l~~~L~~-g~--~V~~~~r~~~~~--~-------~--~~~Dl~~~~~~~~~~~~~~~d~vi~~a~   66 (273)
T 2ggs_A            1 MRTLITGASGQLGIELSRLLSE-RH--EVIKVYNSSEIQ--G-------G--YKLDLTDFPRLEDFIIKKRPDVIINAAA   66 (273)
T ss_dssp             CCEEEETTTSHHHHHHHHHHTT-TS--CEEEEESSSCCT--T-------C--EECCTTSHHHHHHHHHHHCCSEEEECCC
T ss_pred             CEEEEECCCChhHHHHHHHHhc-CC--eEEEecCCCcCC--C-------C--ceeccCCHHHHHHHHHhcCCCEEEECCc
Confidence            5899999999999999998884 65  899999876210  0       0  110 1111234455665  999999998


Q ss_pred             CCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          124 VPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       124 ~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      .....  ..+..+.+..|+.....+++.+.+...  .++++|
T Consensus        67 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~iv~~S  106 (273)
T 2ggs_A           67 MTDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDS--YIVHIS  106 (273)
T ss_dssp             CCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTC--EEEEEE
T ss_pred             ccChhhhhhCHHHHHHHhHHHHHHHHHHHHHhCC--eEEEEe
Confidence            65321  123345677899999999999887643  555554

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=97.91  E-value=2.2e-05  Score=69.55  Aligned_cols=94  Identities=13%  Similarity=0.210  Sum_probs=63.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccE-EEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSV-LHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~e-I~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      +|||+|||+ |.+|..++..|...|+  + |.++|+++..  ..++....   .+..   .++++++++++|+||++...
T Consensus        10 ~m~i~iiG~-G~mG~~~a~~l~~~g~--~~v~~~~~~~~~--~~~~~~~~---g~~~---~~~~~~~~~~~Dvvi~av~~   78 (266)
T 3d1l_A           10 DTPIVLIGA-GNLATNLAKALYRKGF--RIVQVYSRTEES--ARELAQKV---EAEY---TTDLAEVNPYAKLYIVSLKD   78 (266)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHHTC--CEEEEECSSHHH--HHHHHHHT---TCEE---ESCGGGSCSCCSEEEECCCH
T ss_pred             CCeEEEEcC-CHHHHHHHHHHHHCCC--eEEEEEeCCHHH--HHHHHHHc---CCce---eCCHHHHhcCCCEEEEecCH
Confidence            468999998 9999999999988886  5 8999987521  11122110   1122   23566778999999998520


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPV  166 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPv  166 (289)
                                    +  .+.++++.+.+.. |+.+++..++-.
T Consensus        79 --------------~--~~~~v~~~l~~~~~~~~ivv~~s~~~  105 (266)
T 3d1l_A           79 --------------S--AFAELLQGIVEGKREEALMVHTAGSI  105 (266)
T ss_dssp             --------------H--HHHHHHHHHHTTCCTTCEEEECCTTS
T ss_pred             --------------H--HHHHHHHHHHhhcCCCcEEEECCCCC
Confidence                          1  2366667777665 678887777643

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=97.90  E-value=3.4e-05  Score=67.99  Aligned_cols=113  Identities=18%  Similarity=0.238  Sum_probs=68.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCC---CHHhhhC------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQ---QLEDALT------  113 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~---d~~eal~------  113 (289)
                      .+++.|+||+|.+|.+++..|+..|.  +|+++|++..  .....++..     .+..+. +-+   +.++.++      
T Consensus         8 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~~   80 (259)
T 4e6p_A            8 GKSALITGSARGIGRAFAEAYVREGA--TVAIADIDIERARQAAAEIGP-----AAYAVQMDVTRQDSIDAAIAATVEHA   80 (259)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCT-----TEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCC-----CceEEEeeCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999998  8999998762  222222211     111111 111   2223333      


Q ss_pred             -CCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecCC
Q 022947          114 -GMDIVIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       114 -~aDiVIitag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~tNP  165 (289)
                       +.|++|.+||......   .+   -.+.+..|+..    .+...+.+.+..+.+.|+++|..
T Consensus        81 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~  143 (259)
T 4e6p_A           81 GGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQ  143 (259)
T ss_dssp             SSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECCh
Confidence             8999999999753211   11   22345566554    44455555555556777777653

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=97.89  E-value=3.3e-05  Score=67.12  Aligned_cols=114  Identities=14%  Similarity=0.149  Sum_probs=65.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhhC-------
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDALT-------  113 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal~-------  113 (289)
                      +++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++.... ..++..+. +-+|   ++++++       
T Consensus         3 k~vlItGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (250)
T 2cfc_A            3 RVAIVTGASSGNGLAIATRFLARGD--RVAALDLSAETLEETARTHWHAY-ADKVLRVRADVADEGDVNAAIAATMEQFG   79 (250)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHSTTT-GGGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            5799999999999999999999997  8999998752  11122221110 11222221 1122   223333       


Q ss_pred             CCCEEEEcCCCCCCCC------Cc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecC
Q 022947          114 GMDIVIIPAGVPRKPG------MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       114 ~aDiVIitag~~~~~g------~~---r~d~~~~N~~i~----~~i~~~i~~~~p~aiviv~tN  164 (289)
                      +.|+||.+||......      .+   -...+..|+...    +.+.+.+++.. .+.|+++|.
T Consensus        80 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~isS  142 (250)
T 2cfc_A           80 AIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQG-AGVIVNIAS  142 (250)
T ss_dssp             CCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CCEEEEECC
Confidence            8999999998753211      11   223455565544    44555555443 456666654

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=97.89  E-value=8.3e-05  Score=65.87  Aligned_cols=117  Identities=14%  Similarity=0.181  Sum_probs=70.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEE----ecCCCHHhh-------h
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGF----LGQQQLEDA-------L  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~----~~t~d~~ea-------l  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|++..  .....++.... ..++..+    +...+.++.       +
T Consensus        20 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   96 (266)
T 4egf_A           20 GKRALITGATKGIGADIARAFAAAGA--RLVLSGRDVSELDAARRALGEQF-GTDVHTVAIDLAEPDAPAELARRAAEAF   96 (266)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTSTTHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999997  8999999762  22222332211 1122221    111222222       2


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecCC
Q 022947          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~tNP  165 (289)
                      ...|++|.+||......   .+   -...+..|+..    .+.+.+.+.+....+.|+++|.-
T Consensus        97 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~  159 (266)
T 4egf_A           97 GGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASA  159 (266)
T ss_dssp             TSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcch
Confidence            48999999999754221   11   12345566544    45555556555556777777643

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=97.89  E-value=1.9e-05  Score=72.58  Aligned_cols=97  Identities=22%  Similarity=0.252  Sum_probs=63.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccC---Cc----eEEEEecCCCHHhhhCCCCE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT---NA----VVRGFLGQQQLEDALTGMDI  117 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~---~~----~v~~~~~t~d~~eal~~aDi  117 (289)
                      +++||+|||+ |.+|+.++..|+..|+  +|.++|+++..  +..+.....   .+    .+..   ++++.+ ++++|+
T Consensus        13 ~~~kI~iIG~-G~mG~ala~~L~~~G~--~V~~~~r~~~~--~~~l~~~g~~~~~~~~~~~~~~---~~~~~~-~~~aDv   83 (335)
T 1z82_A           13 MEMRFFVLGA-GSWGTVFAQMLHENGE--EVILWARRKEI--VDLINVSHTSPYVEESKITVRA---TNDLEE-IKKEDI   83 (335)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHH--HHHHHHHSCBTTBTTCCCCSEE---ESCGGG-CCTTEE
T ss_pred             cCCcEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHH--HHHHHHhCCcccCCCCeeeEEE---eCCHHH-hcCCCE
Confidence            4679999998 9999999999999998  99999987521  111221110   00    1232   235656 899999


Q ss_pred             EEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcc
Q 022947          118 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS  168 (289)
Q Consensus       118 VIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~  168 (289)
                      ||++...                ..+.++++.+..  ++.+++.++|.++.
T Consensus        84 Vil~vk~----------------~~~~~v~~~l~~--~~~~vv~~~nGi~~  116 (335)
T 1z82_A           84 LVIAIPV----------------QYIREHLLRLPV--KPSMVLNLSKGIEI  116 (335)
T ss_dssp             EEECSCG----------------GGHHHHHTTCSS--CCSEEEECCCCCCT
T ss_pred             EEEECCH----------------HHHHHHHHHhCc--CCCEEEEEeCCCCC
Confidence            9998521                113444444443  77788888887553

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=97.89  E-value=0.00013  Score=64.95  Aligned_cols=131  Identities=15%  Similarity=0.198  Sum_probs=69.4

Q ss_pred             ccccccccccccccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-chhHHhhhhcccCCceEEEEe-c
Q 022947           27 EGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFL-G  104 (289)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~~g~~~DL~~~~~~~~v~~~~-~  104 (289)
                      +-...+|.+|.-..  ..+.+++.|+||+|.+|..++..|+..|.  +|+++|.++ ......++...  ...+..+. +
T Consensus        14 ~~~~~~~~~m~~~~--~l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~D   87 (273)
T 3uf0_A           14 GTENLYFQSMTGPF--SLAGRTAVVTGAGSGIGRAIAHGYARAGA--HVLAWGRTDGVKEVADEIADG--GGSAEAVVAD   87 (273)
T ss_dssp             -----------CTT--CCTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTHHHHHHHHHHTT--TCEEEEEECC
T ss_pred             cccccchhhccccc--CCCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCHHHHHHHHHHHHhc--CCcEEEEEec
Confidence            34456777765322  23456899999999999999999999997  899999654 22223333322  12222221 1


Q ss_pred             CCCHH---h------hhCCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHH----HHHHHHHHhCCCcEEEEecC
Q 022947          105 QQQLE---D------ALTGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVK----TLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       105 t~d~~---e------al~~aDiVIitag~~~~~g---~~---r~d~~~~N~~i~~----~i~~~i~~~~p~aiviv~tN  164 (289)
                      -+|.+   +      .+...|++|.+||......   .+   -...+..|+....    .+.+.+.+.. .+.|+++|.
T Consensus        88 v~d~~~v~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~IV~isS  165 (273)
T 3uf0_A           88 LADLEGAANVAEELAATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHG-SGRIVTIAS  165 (273)
T ss_dssp             TTCHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCHHHHHHHHHHHHhcCCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEcc
Confidence            12221   1      1247899999999754321   11   1234566665544    4444444443 466666654

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=97.89  E-value=4.3e-05  Score=69.79  Aligned_cols=70  Identities=11%  Similarity=0.192  Sum_probs=48.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      ++|||+|||+ |.+|..++..|+..|+ .+|+++|+++.......+....    +..   .+++++++++||+||++..
T Consensus        23 ~~~~I~iIG~-G~mG~~~A~~L~~~G~-~~V~~~dr~~~~~~~~~~~~~g----~~~---~~~~~e~~~~aDvVi~~vp   92 (312)
T 3qsg_A           23 NAMKLGFIGF-GEAASAIASGLRQAGA-IDMAAYDAASAESWRPRAEELG----VSC---KASVAEVAGECDVIFSLVT   92 (312)
T ss_dssp             --CEEEEECC-SHHHHHHHHHHHHHSC-CEEEEECSSCHHHHHHHHHHTT----CEE---CSCHHHHHHHCSEEEECSC
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHHCCC-CeEEEEcCCCCHHHHHHHHHCC----CEE---eCCHHHHHhcCCEEEEecC
Confidence            3579999998 9999999999998885 4899999963011111122211    121   3467788999999999864

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=97.89  E-value=9.1e-05  Score=65.31  Aligned_cols=116  Identities=20%  Similarity=0.166  Sum_probs=68.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhh-------h
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------L  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------l  112 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|++..  .....++....  ..+..+. +-+|   ..+.       +
T Consensus        29 ~k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~  104 (262)
T 3rkr_A           29 GQVAVVTGASRGIGAAIARKLGSLGA--RVVLTARDVEKLRAVEREIVAAG--GEAESHACDLSHSDAIAAFATGVLAAH  104 (262)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhC--CceeEEEecCCCHHHHHHHHHHHHHhc
Confidence            46899999999999999999999997  8999998762  22223333221  2222221 1122   2222       2


Q ss_pred             CCCCEEEEcCCCCCCCC----Cc---hhhHHHhhHHHHHHHHHH----HHHhCCCcEEEEecCCC
Q 022947          113 TGMDIVIIPAGVPRKPG----MT---RDDLFNINAGIVKTLCEG----IAKCCPKAIVNLISNPV  166 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g----~~---r~d~~~~N~~i~~~i~~~----i~~~~p~aiviv~tNPv  166 (289)
                      ...|++|.+||.....+    .+   -.+.+..|+.....+.+.    +.+. ..+.|+++|...
T Consensus       105 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~  168 (262)
T 3rkr_A          105 GRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAA-KRGHIINISSLA  168 (262)
T ss_dssp             SCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCCEEEEECSSC
T ss_pred             CCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCceEEEEechh
Confidence            46899999999732221    11   223455665554444444    4433 456677766544

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=97.89  E-value=5e-05  Score=68.07  Aligned_cols=93  Identities=18%  Similarity=0.279  Sum_probs=63.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      +|||+|||++|.+|..++..|...|+  +|+++|+++..  ..++....    +..   + +..++++++|+||++... 
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~g~--~V~~~~r~~~~--~~~~~~~g----~~~---~-~~~~~~~~aDvVi~av~~-   77 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDSAH--HLAAIEIAPEG--RDRLQGMG----IPL---T-DGDGWIDEADVVVLALPD-   77 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHSSS--EEEEECCSHHH--HHHHHHTT----CCC---C-CSSGGGGTCSEEEECSCH-
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCHHH--HHHHHhcC----CCc---C-CHHHHhcCCCEEEEcCCc-
Confidence            46999999779999999999999997  99999987521  11122111    111   1 345778999999998521 


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 022947          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPV  166 (289)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPv  166 (289)
                                     ..+.++++.+.... |+.+|+..|+..
T Consensus        78 ---------------~~~~~v~~~l~~~l~~~~ivv~~s~~~  104 (286)
T 3c24_A           78 ---------------NIIEKVAEDIVPRVRPGTIVLILDAAA  104 (286)
T ss_dssp             ---------------HHHHHHHHHHGGGSCTTCEEEESCSHH
T ss_pred             ---------------hHHHHHHHHHHHhCCCCCEEEECCCCc
Confidence                           11566677777664 677776656543

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=97.89  E-value=4e-05  Score=68.30  Aligned_cols=132  Identities=14%  Similarity=0.144  Sum_probs=68.9

Q ss_pred             cccccccccccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEE--EecC
Q 022947           30 SSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRG--FLGQ  105 (289)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~--~~~t  105 (289)
                      ..++.+.+.......+.+++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++...........  .+..
T Consensus        12 ~~~~~~gp~~m~~~l~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~   89 (270)
T 3ftp_A           12 LEAQTQGPGSMDKTLDKQVAIVTGASRGIGRAIALELARRGA--MVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDA   89 (270)
T ss_dssp             -----------CCTTTTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCH
T ss_pred             ccCCCCCCcccccCCCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCH
Confidence            344444443333223456899999999999999999999998  8999998762  222223322211111110  1111


Q ss_pred             CCHHhh-------hCCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHH----HHHHhCCCcEEEEecC
Q 022947          106 QQLEDA-------LTGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCE----GIAKCCPKAIVNLISN  164 (289)
Q Consensus       106 ~d~~ea-------l~~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~~~i~~----~i~~~~p~aiviv~tN  164 (289)
                      .+.++.       +...|++|.+||.....   ..+   -...+..|+.....+.+    .+.+. ..+.|+++|.
T Consensus        90 ~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS  164 (270)
T 3ftp_A           90 TAVDALVESTLKEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKA-RGGRIVNITS  164 (270)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEECc
Confidence            122222       23799999999975322   112   22345667655544444    44433 3566776654

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=97.89  E-value=5.1e-05  Score=65.61  Aligned_cols=116  Identities=17%  Similarity=0.138  Sum_probs=66.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEE--ecCCCHHhhhC---CCCEEE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGF--LGQQQLEDALT---GMDIVI  119 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~--~~t~d~~eal~---~aDiVI  119 (289)
                      +.++|.|+||+|++|.+++..|+..|.  +|+++|+++....  ++............  ....++++.++   ..|+||
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~--~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi   81 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHASGA--KVVAVTRTNSDLV--SLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLV   81 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHH--HHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEE
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHHhccCCCcEEecCCCHHHHHHHHHHcCCCCEEE
Confidence            346899999999999999999999997  8999998752111  11110001111111  11112334444   479999


Q ss_pred             EcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHH----HHhCCCcEEEEecC
Q 022947          120 IPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISN  164 (289)
Q Consensus       120 itag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i----~~~~p~aiviv~tN  164 (289)
                      .+||.....   ..+   ..+.+..|+.....+.+.+    .+....+.|+++|.
T Consensus        82 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS  136 (244)
T 1cyd_A           82 NNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSS  136 (244)
T ss_dssp             ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             ECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcc
Confidence            999865321   111   2235566766654444444    33343566666664

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=97.88  E-value=0.00012  Score=65.02  Aligned_cols=91  Identities=19%  Similarity=0.168  Sum_probs=61.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~~  126 (289)
                      |||+|||+ |.+|..++..|...|+  +|+++|+++...  ..+.......  ..   +++++++ +++|+||++..   
T Consensus         1 m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~~~~--~~~~~~g~~~--~~---~~~~~~~-~~~D~vi~av~---   66 (279)
T 2f1k_A            1 MKIGVVGL-GLIGASLAGDLRRRGH--YLIGVSRQQSTC--EKAVERQLVD--EA---GQDLSLL-QTAKIIFLCTP---   66 (279)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHH--HHHHHTTSCS--EE---ESCGGGG-TTCSEEEECSC---
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHhCCCCc--cc---cCCHHHh-CCCCEEEEECC---
Confidence            58999998 9999999999999887  899999875211  1122111111  11   2356666 99999999852   


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 022947          127 KPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (289)
Q Consensus       127 ~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tN  164 (289)
                                   ...+.++++.+..+. |+.+|+.++|
T Consensus        67 -------------~~~~~~~~~~l~~~~~~~~~vv~~~~   92 (279)
T 2f1k_A           67 -------------IQLILPTLEKLIPHLSPTAIVTDVAS   92 (279)
T ss_dssp             -------------HHHHHHHHHHHGGGSCTTCEEEECCS
T ss_pred             -------------HHHHHHHHHHHHhhCCCCCEEEECCC
Confidence                         123556667776654 6777766644

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=97.88  E-value=3.1e-05  Score=69.31  Aligned_cols=66  Identities=17%  Similarity=0.271  Sum_probs=46.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      ++|||+|||+ |.+|..++..|...|+  +|.++| ++....  .+....    +.   ...+++++++++|+||++..
T Consensus         2 ~~m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~-~~~~~~--~~~~~g----~~---~~~~~~~~~~~~D~vi~~vp   67 (295)
T 1yb4_A            2 NAMKLGFIGL-GIMGSPMAINLARAGH--QLHVTT-IGPVAD--ELLSLG----AV---NVETARQVTEFADIIFIMVP   67 (295)
T ss_dssp             --CEEEECCC-STTHHHHHHHHHHTTC--EEEECC-SSCCCH--HHHTTT----CB---CCSSHHHHHHTCSEEEECCS
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHhCCC--EEEEEc-CHHHHH--HHHHcC----Cc---ccCCHHHHHhcCCEEEEECC
Confidence            4579999998 9999999999998887  899999 662211  111111    11   13467788899999999863

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=97.87  E-value=1e-05  Score=71.12  Aligned_cols=97  Identities=14%  Similarity=0.202  Sum_probs=62.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCC--ccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~--~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      +|||+|||+ |.+|..++..|...|+  ..+|.++|+++..  ..++....   .+..   ..+.+++++++|+||++. 
T Consensus         2 ~~~i~iIG~-G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~--~~~~~~~~---g~~~---~~~~~e~~~~aDvVilav-   71 (247)
T 3gt0_A            2 DKQIGFIGC-GNMGMAMIGGMINKNIVSSNQIICSDLNTAN--LKNASEKY---GLTT---TTDNNEVAKNADILILSI-   71 (247)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTSSCGGGEEEECSCHHH--HHHHHHHH---CCEE---CSCHHHHHHHCSEEEECS-
T ss_pred             CCeEEEECc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCHHH--HHHHHHHh---CCEE---eCChHHHHHhCCEEEEEe-
Confidence            469999998 9999999999998885  3489999987521  12222110   1121   346678899999999986 


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCc
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVN  167 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd  167 (289)
                       +  +.            .+.++++.+..+. |+.+++..++.+.
T Consensus        72 -~--~~------------~~~~v~~~l~~~l~~~~~vvs~~~gi~  101 (247)
T 3gt0_A           72 -K--PD------------LYASIINEIKEIIKNDAIIVTIAAGKS  101 (247)
T ss_dssp             -C--TT------------THHHHC---CCSSCTTCEEEECSCCSC
T ss_pred             -C--HH------------HHHHHHHHHHhhcCCCCEEEEecCCCC
Confidence             1  11            1445556666655 5666665555554

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=97.87  E-value=2e-05  Score=70.55  Aligned_cols=97  Identities=16%  Similarity=0.043  Sum_probs=62.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc---hhHHhhhhcccCCceEEEE----ecCCCHHhhhCCCCEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGF----LGQQQLEDALTGMDIV  118 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~---~g~~~DL~~~~~~~~v~~~----~~t~d~~eal~~aDiV  118 (289)
                      ++||.|+||+|++|++++..|+..|.  +|++++++..   ......+.... ...+..+    ....++.++++++|+|
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~d~~~l~~~~~~~d~v   80 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGH--PTYVLFRPEVVSNIDKVQMLLYFK-QLGAKLIEASLDDHQRLVDALKQVDVV   80 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCSCCSSCHHHHHHHHHHH-TTTCEEECCCSSCHHHHHHHHTTCSEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC--cEEEEECCCcccchhHHHHHHHHH-hCCeEEEeCCCCCHHHHHHHHhCCCEE
Confidence            56899999999999999999999886  8999998752   11211111100 0111111    1123466789999999


Q ss_pred             EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC
Q 022947          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC  154 (289)
Q Consensus       119 Iitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~  154 (289)
                      |+++|.... +        .|+...+.+++.+++.+
T Consensus        81 i~~a~~~~~-~--------~~~~~~~~l~~aa~~~g  107 (313)
T 1qyd_A           81 ISALAGGVL-S--------HHILEQLKLVEAIKEAG  107 (313)
T ss_dssp             EECCCCSSS-S--------TTTTTHHHHHHHHHHSC
T ss_pred             EECCccccc-h--------hhHHHHHHHHHHHHhcC
Confidence            999885421 1        14444566777777765

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=97.87  E-value=0.0001  Score=66.47  Aligned_cols=135  Identities=12%  Similarity=0.054  Sum_probs=74.6

Q ss_pred             CccccccccccccccccccCCCCCCCEEEEEcCCC--ccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcccCCce
Q 022947           22 PTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAG--GIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAV   98 (289)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG--~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~~~~~~   98 (289)
                      |.-+..|.++....++      .+.+++.|+||+|  .+|..++..|+..|.  +|++.|+++. .....++........
T Consensus        12 ~~~~~~gp~sm~~~~~------l~~k~vlVTGasg~~GIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~   83 (296)
T 3k31_A           12 LEAQTQGPGSMRTGML------MEGKKGVIIGVANDKSLAWGIAKAVCAQGA--EVALTYLSETFKKRVDPLAESLGVKL   83 (296)
T ss_dssp             ---------CCCCCCT------TTTCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHHTCCE
T ss_pred             ceecccCCccccchhc------cCCCEEEEEeCCCCCCHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhcCCeE
Confidence            4457888887544332      2345899999976  999999999999997  8999999862 111222221110111


Q ss_pred             EEE--EecCCCHHhhh-------CCCCEEEEcCCCCCC-----C--CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCcE
Q 022947           99 VRG--FLGQQQLEDAL-------TGMDIVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAI  158 (289)
Q Consensus        99 v~~--~~~t~d~~eal-------~~aDiVIitag~~~~-----~--g~~---r~d~~~~N~~i~~~i~~~i~~~~-p~ai  158 (289)
                      ...  ++...+.++.+       ...|++|.+||....     +  ..+   -...+..|+.....+++.+..+- ..+.
T Consensus        84 ~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~  163 (296)
T 3k31_A           84 TVPCDVSDAESVDNMFKVLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGS  163 (296)
T ss_dssp             EEECCTTCHHHHHHHHHHHHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEE
T ss_pred             EEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCE
Confidence            100  11111222222       478999999997632     1  112   23456778877777777777654 3567


Q ss_pred             EEEecC
Q 022947          159 VNLISN  164 (289)
Q Consensus       159 viv~tN  164 (289)
                      |+++|.
T Consensus       164 IV~isS  169 (296)
T 3k31_A          164 ILTLSY  169 (296)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            777764

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=97.87  E-value=5.4e-05  Score=67.92  Aligned_cols=66  Identities=18%  Similarity=0.203  Sum_probs=48.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      +|||+|||+ |.+|..++..|...|+  +|.++|+++...  ..+....    +..   ..+++++++++|+||++..
T Consensus         5 ~m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~~~~--~~~~~~g----~~~---~~~~~~~~~~~D~vi~~v~   70 (299)
T 1vpd_A            5 TMKVGFIGL-GIMGKPMSKNLLKAGY--SLVVSDRNPEAI--ADVIAAG----AET---ASTAKAIAEQCDVIITMLP   70 (299)
T ss_dssp             -CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHHH--HHHHHTT----CEE---CSSHHHHHHHCSEEEECCS
T ss_pred             cceEEEECc-hHHHHHHHHHHHhCCC--EEEEEeCCHHHH--HHHHHCC----Cee---cCCHHHHHhCCCEEEEECC
Confidence            369999998 9999999999998887  899999875211  1122211    121   3467788899999999864

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=97.85  E-value=4.7e-05  Score=71.80  Aligned_cols=114  Identities=12%  Similarity=0.092  Sum_probs=70.5

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhH-----Hhhhhcc-------cCCceEEEEec----CCC
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-----TADISHM-------DTNAVVRGFLG----QQQ  107 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~-----~~DL~~~-------~~~~~v~~~~~----t~d  107 (289)
                      ..+++|.|+||+|++|+.++..|+..|.  +|+++++++....     ...+...       .....+..+.+    ..+
T Consensus        67 ~~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~  144 (427)
T 4f6c_A           67 RPLGNTLLTGATGFLGAYLIEALQGYSH--RIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDD  144 (427)
T ss_dssp             CCCEEEEEECTTSHHHHHHHHHHTTTEE--EEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CC
T ss_pred             CCCCEEEEecCCcHHHHHHHHHHHcCCC--EEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCccc
Confidence            3457999999999999999999977776  9999998763111     1111110       00122332211    112


Q ss_pred             HHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       108 ~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      +. ++.++|+||.+||..... .+..+.+..|+.....+++.+.+ . ...++++|
T Consensus       145 l~-~~~~~d~Vih~A~~~~~~-~~~~~~~~~Nv~g~~~l~~aa~~-~-~~~~v~~S  196 (427)
T 4f6c_A          145 VV-LPENMDTIIHAGARTDHF-GDDDEFEKVNVQGTVDVIRLAQQ-H-HARLIYVS  196 (427)
T ss_dssp             CC-CSSCCSEEEECCCCC--------CHHHHHHHHHHHHHHHHHH-T-TCEEEEEE
T ss_pred             CC-CcCCCCEEEECCcccCCC-CCHHHHHHHHHHHHHHHHHHHHh-c-CCcEEEEC
Confidence            22 568999999999865322 33456778899999999999988 3 33444443

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=97.85  E-value=2.9e-05  Score=67.98  Aligned_cols=116  Identities=16%  Similarity=0.101  Sum_probs=73.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHh-CCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhhC----
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDALT----  113 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~-~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal~----  113 (289)
                      ++++|.|+||+|++|..++..|+. .|.  +|++++++..  .....++....  .++..+. +-+|   +++.++    
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~   78 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSG--DVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRK   78 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS--EEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCC--eEEEEeCChHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHH
Confidence            346899999999999999999999 887  8999998752  22222332211  1122111 1122   223333    


Q ss_pred             ---CCCEEEEcCCCCCCCCC------chhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 022947          114 ---GMDIVIIPAGVPRKPGM------TRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (289)
Q Consensus       114 ---~aDiVIitag~~~~~g~------~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tN  164 (289)
                         +.|+||++||.......      .-...+..|+.....+.+.+.+.. +.+.|+++|.
T Consensus        79 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS  139 (276)
T 1wma_A           79 EYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  139 (276)
T ss_dssp             HHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             hcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECC
Confidence               89999999987543211      123457788888888888887764 3456766654

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.85  E-value=1.6e-05  Score=68.92  Aligned_cols=113  Identities=16%  Similarity=0.133  Sum_probs=68.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhH------HhhhhcccCCceEEEEecCCCHHhhh--CCCCE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV------TADISHMDTNAVVRGFLGQQQLEDAL--TGMDI  117 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~------~~DL~~~~~~~~v~~~~~t~d~~eal--~~aDi  117 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++....      ..|+.+..   .+...  .....+.+  .+.|+
T Consensus         3 ~k~vlITGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~D~~~~~---~~~~~--~~~~~~~~~~g~id~   75 (236)
T 1ooe_A            3 SGKVIVYGGKGALGSAILEFFKKNGY--TVLNIDLSANDQADSNILVDGNKNWTE---QEQSI--LEQTASSLQGSQVDG   75 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCCTTSSEEEECCTTSCHHH---HHHHH--HHHHHHHHTTCCEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEecCccccccccEEEeCCCCCHH---HHHHH--HHHHHHHhCCCCCCE
Confidence            35799999999999999999999997  8999998762110      01111110   00000  00111222  48999


Q ss_pred             EEEcCCCCCCC----CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 022947          118 VIIPAGVPRKP----GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNP  165 (289)
Q Consensus       118 VIitag~~~~~----g~~---r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNP  165 (289)
                      +|.+||.....    ..+   ....+..|+.....+.+.+.++- ..+.|+++|..
T Consensus        76 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~  131 (236)
T 1ooe_A           76 VFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAA  131 (236)
T ss_dssp             EEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCG
T ss_pred             EEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECch
Confidence            99999964321    111   23456678777777777766543 24667776643

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=97.85  E-value=8.6e-05  Score=65.16  Aligned_cols=114  Identities=20%  Similarity=0.286  Sum_probs=67.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhhC-------
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDALT-------  113 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal~-------  113 (289)
                      +++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++....  .++..+. +-+|   +++.++       
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g   78 (256)
T 1geg_A            3 KVALVTGAGQGIGKAIALRLVKDGF--AVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTLG   78 (256)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4799999999999999999999997  8999998762  22222332211  1222211 1122   223333       


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 022947          114 GMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       114 ~aDiVIitag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      ..|++|.+||......   .+   ....+..|+.    ..+.+.+.+.+..+.+.|+++|.
T Consensus        79 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS  139 (256)
T 1geg_A           79 GFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACS  139 (256)
T ss_dssp             CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECc
Confidence            8999999998753211   11   1234556654    34555555555443566777654

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.84  E-value=2.1e-05  Score=60.13  Aligned_cols=72  Identities=28%  Similarity=0.367  Sum_probs=48.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCC-CccEEEEEeCCCchhHHhhhhcccCCceEEEE--ecCCCHHhhhCCCCEEEEc
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTNAVVRGF--LGQQQLEDALTGMDIVIIP  121 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g-~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~--~~t~d~~eal~~aDiVIit  121 (289)
                      +++||+|+|+ |++|..++..|...| .  +|+++|+++....  .+...  .......  ....++.+.++++|+||.+
T Consensus         4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~--~v~~~~r~~~~~~--~~~~~--~~~~~~~d~~~~~~~~~~~~~~d~vi~~   76 (118)
T 3ic5_A            4 MRWNICVVGA-GKIGQMIAALLKTSSNY--SVTVADHDLAALA--VLNRM--GVATKQVDAKDEAGLAKALGGFDAVISA   76 (118)
T ss_dssp             TCEEEEEECC-SHHHHHHHHHHHHCSSE--EEEEEESCHHHHH--HHHTT--TCEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred             CcCeEEEECC-CHHHHHHHHHHHhCCCc--eEEEEeCCHHHHH--HHHhC--CCcEEEecCCCHHHHHHHHcCCCEEEEC
Confidence            3569999999 999999999999988 5  8999998762211  11111  1111111  1112455678999999999


Q ss_pred             CC
Q 022947          122 AG  123 (289)
Q Consensus       122 ag  123 (289)
                      ++
T Consensus        77 ~~   78 (118)
T 3ic5_A           77 AP   78 (118)
T ss_dssp             SC
T ss_pred             CC
Confidence            74

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=97.84  E-value=5.6e-05  Score=70.65  Aligned_cols=94  Identities=13%  Similarity=0.247  Sum_probs=64.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCC---CEEEEc
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGM---DIVIIP  121 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~a---DiVIit  121 (289)
                      ++|||+|||. |.+|..++..|+..|+  +|.++|+++.  ...++....    +.   ..++++++++++   |+||++
T Consensus        21 ~~mkIgiIGl-G~mG~~~A~~L~~~G~--~V~v~dr~~~--~~~~l~~~g----~~---~~~s~~e~~~~a~~~DvVi~~   88 (358)
T 4e21_A           21 QSMQIGMIGL-GRMGADMVRRLRKGGH--ECVVYDLNVN--AVQALEREG----IA---GARSIEEFCAKLVKPRVVWLM   88 (358)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHTTT----CB---CCSSHHHHHHHSCSSCEEEEC
T ss_pred             cCCEEEEECc-hHHHHHHHHHHHhCCC--EEEEEeCCHH--HHHHHHHCC----CE---EeCCHHHHHhcCCCCCEEEEe
Confidence            3579999998 9999999999999998  9999998752  122222221    11   234677888888   999998


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 022947          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPV  166 (289)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPv  166 (289)
                      ...+                .+.++++.+.... |+.+|+..||-.
T Consensus        89 vp~~----------------~v~~vl~~l~~~l~~g~iiId~st~~  118 (358)
T 4e21_A           89 VPAA----------------VVDSMLQRMTPLLAANDIVIDGGNSH  118 (358)
T ss_dssp             SCGG----------------GHHHHHHHHGGGCCTTCEEEECSSCC
T ss_pred             CCHH----------------HHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence            5311                2444556666655 677777766543

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=97.84  E-value=2.9e-05  Score=70.01  Aligned_cols=75  Identities=16%  Similarity=0.242  Sum_probs=50.8

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhH-HhhhhcccCCceEEE--EecCCCHHhhhCCCCEEEEcC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGV-TADISHMDTNAVVRG--FLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~-~~DL~~~~~~~~v~~--~~~t~d~~eal~~aDiVIita  122 (289)
                      +||.|+||+|++|++++..|+..|+  +|++++++.. ... ..++....  ..+..  +....++.++++++|+||+++
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~l~~~~--v~~v~~Dl~d~~~l~~a~~~~d~vi~~a   87 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGH--PTYVFTRPNSSKTTLLDEFQSLG--AIIVKGELDEHEKLVELMKKVDVVISAL   87 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTC--CEEEEECTTCSCHHHHHHHHHTT--CEEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCC--cEEEEECCCCchhhHHHHhhcCC--CEEEEecCCCHHHHHHHHcCCCEEEECC
Confidence            4899999999999999999999987  8999998762 221 11222211  11111  111134667899999999998


Q ss_pred             CCC
Q 022947          123 GVP  125 (289)
Q Consensus       123 g~~  125 (289)
                      +..
T Consensus        88 ~~~   90 (318)
T 2r6j_A           88 AFP   90 (318)
T ss_dssp             CGG
T ss_pred             chh
Confidence            743

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=97.84  E-value=4.5e-05  Score=69.44  Aligned_cols=96  Identities=22%  Similarity=0.236  Sum_probs=63.1

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeC--CCchhHHhhhhcccC----C---ceEEEEecCC--CHHhhhCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV--VNTPGVTADISHMDT----N---AVVRGFLGQQ--QLEDALTGM  115 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~--~~~~g~~~DL~~~~~----~---~~v~~~~~t~--d~~eal~~a  115 (289)
                      |||+|||+ |.+|+.++..|+..|+  +|.++|+  ++..  ...+.....    .   ..+..   ++  ++.++++++
T Consensus         1 m~I~iiG~-G~mG~~~a~~L~~~g~--~V~~~~r~~~~~~--~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~   72 (335)
T 1txg_A            1 MIVSILGA-GAMGSALSVPLVDNGN--EVRIWGTEFDTEI--LKSISAGREHPRLGVKLNGVEI---FWPEQLEKCLENA   72 (335)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCC--EEEEECCGGGHHH--HHHHHTTCCBTTTTBCCCSEEE---ECGGGHHHHHTTC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEEccCCHHH--HHHHHHhCcCcccCccccceEE---ecHHhHHHHHhcC
Confidence            58999998 9999999999998887  9999998  5421  111211110    0   11232   23  566788999


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 022947          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV  166 (289)
Q Consensus       116 DiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPv  166 (289)
                      |+||++....                .+.++++.+....|+.+|+.++|.+
T Consensus        73 D~vi~~v~~~----------------~~~~v~~~i~~l~~~~~vv~~~ng~  107 (335)
T 1txg_A           73 EVVLLGVSTD----------------GVLPVMSRILPYLKDQYIVLISKGL  107 (335)
T ss_dssp             SEEEECSCGG----------------GHHHHHHHHTTTCCSCEEEECCCSE
T ss_pred             CEEEEcCChH----------------HHHHHHHHHhcCCCCCEEEEEcCcC
Confidence            9999986321                1334445555533677888888876

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=97.83  E-value=2.2e-05  Score=69.31  Aligned_cols=100  Identities=14%  Similarity=0.132  Sum_probs=61.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHhC--CCccEEEEEeCCCchhHHhhhhcccCCceEEE--EecCCCHHhhhCCCCEEEEcCC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDTNAVVRG--FLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~--g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~--~~~t~d~~eal~~aDiVIitag  123 (289)
                      ||.|+||+|++|++++..|+..  |.  +|+++++++....  ++....  ..+..  +....++.++++++|+||+++|
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~--~~~~~~--~~~~~~D~~d~~~~~~~~~~~d~vi~~a~   74 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPAS--QIVAIVRNPAKAQ--ALAAQG--ITVRQADYGDEAALTSALQGVEKLLLISS   74 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGG--GEEEEESCTTTCH--HHHHTT--CEEEECCTTCHHHHHHHTTTCSEEEECC-
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCc--eEEEEEcChHhhh--hhhcCC--CeEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence            5899999999999999999887  76  8999998763211  111111  11111  1111246678899999999988


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      ...          ..|+...+.+++.+++....-+|.+.|
T Consensus        75 ~~~----------~~~~~~~~~l~~a~~~~~~~~~v~~Ss  104 (286)
T 2zcu_A           75 SEV----------GQRAPQHRNVINAAKAAGVKFIAYTSL  104 (286)
T ss_dssp             -----------------CHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             CCc----------hHHHHHHHHHHHHHHHcCCCEEEEECC
Confidence            531          136677788888888776444444433

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=97.83  E-value=1.4e-05  Score=71.85  Aligned_cols=162  Identities=16%  Similarity=0.215  Sum_probs=89.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHhC--CCccEEEEEeCCCchhHHhhhhcccCCceEEE-EecCCCHHhhhC--CCCEEEEcC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALT--GMDIVIIPA  122 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~--g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~eal~--~aDiVIita  122 (289)
                      ||.|+||+|++|++++..|+..  +.  +|+++|++.....     ..   ..+.. .....++.++++  ++|+||++|
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~-----~~---~~~~~D~~d~~~~~~~~~~~~~d~vih~a   70 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKK--NVIASDIVQRDTG-----GI---KFITLDVSNRDEIDRAVEKYSIDAIFHLA   70 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGG--GEEEEESSCCCCT-----TC---CEEECCTTCHHHHHHHHHHTTCCEEEECC
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCC--EEEEecCCCcccc-----Cc---eEEEecCCCHHHHHHHHhhcCCcEEEECC
Confidence            5899999999999999988877  65  8899987652111     00   00110 001123445666  899999999


Q ss_pred             CCCCCCC-CchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHH-HHHHHhCCCCCCcEEEeeeccHHHHH
Q 022947          123 GVPRKPG-MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAA-EVFKKVGTYDPKRLLGVTMLDVVRAN  200 (289)
Q Consensus       123 g~~~~~g-~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~-~~~~~~~~~~~~kviG~t~lds~R~~  200 (289)
                      +...... .+..+.+..|+.....+++.+.+....-+ +++|... +...... ....+.....+...+|.+.+...++-
T Consensus        71 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~-v~~SS~~-~~~~~~~~~~~~e~~~~~p~~~Y~~sK~~~e~~~  148 (317)
T 3ajr_A           71 GILSAKGEKDPALAYKVNMNGTYNILEAAKQHRVEKV-VIPSTIG-VFGPETPKNKVPSITITRPRTMFGVTKIAAELLG  148 (317)
T ss_dssp             CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEE-EEEEEGG-GCCTTSCSSSBCSSSCCCCCSHHHHHHHHHHHHH
T ss_pred             cccCCccccChHHHhhhhhHHHHHHHHHHHHcCCCEE-EEecCHH-HhCCCCCCCCccccccCCCCchHHHHHHHHHHHH
Confidence            8642111 12345678899999999999988654444 4443211 0000000 00000000112233344444444444


Q ss_pred             HHHHHHcCCCCccee-eeEEcc
Q 022947          201 TFVAEVLGLDPREVD-VPVVGG  221 (289)
Q Consensus       201 ~~lA~~l~v~~~~V~-~~V~G~  221 (289)
                      ..+++..|++...++ ..++|.
T Consensus       149 ~~~~~~~~~~~~~lR~~~~~g~  170 (317)
T 3ajr_A          149 QYYYEKFGLDVRSLRYPGIISY  170 (317)
T ss_dssp             HHHHHHHCCEEEEEEECEEECS
T ss_pred             HHHHHhcCCeEEEEecCcEecc
Confidence            455566677766666 557774

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=97.83  E-value=6.9e-05  Score=68.76  Aligned_cols=97  Identities=18%  Similarity=0.160  Sum_probs=60.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcc-c-----C-CceEEEE-ecCCCHHhhhCCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-D-----T-NAVVRGF-LGQQQLEDALTGMD  116 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~-~-----~-~~~v~~~-~~t~d~~eal~~aD  116 (289)
                      ++|||+|||+ |.+|..++..|...|+  +|.++|+++....  .+... .     . ....... ..+++++++++++|
T Consensus         3 ~~mki~iiG~-G~~G~~~a~~L~~~g~--~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D   77 (359)
T 1bg6_A            3 ESKTYAVLGL-GNGGHAFAAYLALKGQ--SVLAWDIDAQRIK--EIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDAD   77 (359)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHH--HHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCS
T ss_pred             CcCeEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCCHHHHH--HHHhcCCeEEeccccccccccceecCCHHHHHhcCC
Confidence            3579999998 9999999999999887  8999998752111  11110 0     0 0000000 01346777799999


Q ss_pred             EEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEe
Q 022947          117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLI  162 (289)
Q Consensus       117 iVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~  162 (289)
                      +||++....    .            ..++++.+..+. |+.+|+..
T Consensus        78 ~vi~~v~~~----~------------~~~~~~~l~~~l~~~~~vv~~  108 (359)
T 1bg6_A           78 VILIVVPAI----H------------HASIAANIASYISEGQLIILN  108 (359)
T ss_dssp             EEEECSCGG----G------------HHHHHHHHGGGCCTTCEEEES
T ss_pred             EEEEeCCch----H------------HHHHHHHHHHhCCCCCEEEEc
Confidence            999996321    0            135556666654 56666554

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.83  E-value=9.2e-05  Score=61.71  Aligned_cols=137  Identities=12%  Similarity=0.031  Sum_probs=78.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhC-CCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCC---HHhh--hCCCCEE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ---LEDA--LTGMDIV  118 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~-g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d---~~ea--l~~aDiV  118 (289)
                      ..++|.|+|+ |.+|..++..|... |+  +|+++|.++...  ..+....  ..+.. ...++   +.++  +.++|+|
T Consensus        38 ~~~~v~IiG~-G~~G~~~a~~L~~~~g~--~V~vid~~~~~~--~~~~~~g--~~~~~-gd~~~~~~l~~~~~~~~ad~v  109 (183)
T 3c85_A           38 GHAQVLILGM-GRIGTGAYDELRARYGK--ISLGIEIREEAA--QQHRSEG--RNVIS-GDATDPDFWERILDTGHVKLV  109 (183)
T ss_dssp             TTCSEEEECC-SHHHHHHHHHHHHHHCS--CEEEEESCHHHH--HHHHHTT--CCEEE-CCTTCHHHHHTBCSCCCCCEE
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHhccCC--eEEEEECCHHHH--HHHHHCC--CCEEE-cCCCCHHHHHhccCCCCCCEE
Confidence            3568999998 99999999999888 87  899999976221  1122211  11111 01112   3344  7899999


Q ss_pred             EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeeccHHH
Q 022947          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVR  198 (289)
Q Consensus       119 Iitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t~lds~R  198 (289)
                      |++.+..           ..|    ..++..+++.+|+..++..+|-.+..     +.+++. |  .+.++.-...-..+
T Consensus       110 i~~~~~~-----------~~~----~~~~~~~~~~~~~~~ii~~~~~~~~~-----~~l~~~-G--~~~vi~p~~~~a~~  166 (183)
T 3c85_A          110 LLAMPHH-----------QGN----QTALEQLQRRNYKGQIAAIAEYPDQL-----EGLLES-G--VDAAFNIYSEAGSG  166 (183)
T ss_dssp             EECCSSH-----------HHH----HHHHHHHHHTTCCSEEEEEESSHHHH-----HHHHHH-T--CSEEEEHHHHHHHH
T ss_pred             EEeCCCh-----------HHH----HHHHHHHHHHCCCCEEEEEECCHHHH-----HHHHHc-C--CCEEEchHHHHHHH
Confidence            9985411           123    33445566677887777666543221     333433 3  34565543333444


Q ss_pred             HHHHHHHHcCCCCc
Q 022947          199 ANTFVAEVLGLDPR  212 (289)
Q Consensus       199 ~~~~lA~~l~v~~~  212 (289)
                      +...+-+.++.+..
T Consensus       167 l~~~~~~~~~~~~~  180 (183)
T 3c85_A          167 FARHVCKQLEPQFT  180 (183)
T ss_dssp             HHHHHHHHHCCCCC
T ss_pred             HHHHHHHhcCCccc
Confidence            55555566655443

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=97.83  E-value=0.00017  Score=63.49  Aligned_cols=157  Identities=11%  Similarity=0.053  Sum_probs=88.5

Q ss_pred             CCEEEEEcCCCc--cHHHHHHHHHhCCCccEEEEEeCCC-chhHHhhhhcccCCceEEEE----ecCCCHHhhh------
Q 022947           46 GFKVAVLGAAGG--IGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGF----LGQQQLEDAL------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~--VGs~la~~L~~~g~~~eI~LvD~~~-~~g~~~DL~~~~~~~~v~~~----~~t~d~~eal------  112 (289)
                      .+++.|+||+|+  +|..++..|+..|.  +|++.|+++ ......++.......++..+    +...+.++.+      
T Consensus         7 ~k~vlVTGasg~~GIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   84 (266)
T 3oig_A            7 GRNIVVMGVANKRSIAWGIARSLHEAGA--RLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQ   84 (266)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHH
Confidence            458999999988  99999999999997  899999876 22222233222111122221    1111222222      


Q ss_pred             -CCCCEEEEcCCCCCC-----C--CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHh
Q 022947          113 -TGMDIVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKV  180 (289)
Q Consensus       113 -~~aDiVIitag~~~~-----~--g~~---r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~  180 (289)
                       ...|++|.+||....     +  ..+   ....+..|+.....+.+.+...- +.+.|+++|......           
T Consensus        85 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~-----------  153 (266)
T 3oig_A           85 VGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGEL-----------  153 (266)
T ss_dssp             HSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTS-----------
T ss_pred             hCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecccccc-----------
Confidence             378999999987541     1  111   23355677777777777776654 456777776533221           


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeE
Q 022947          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPV  218 (289)
Q Consensus       181 ~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V  218 (289)
                       +.|..-.++.+..-...+-+.+++++.  +..|++.+
T Consensus       154 -~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v~~  188 (266)
T 3oig_A          154 -VMPNYNVMGVAKASLDASVKYLAADLG--KENIRVNS  188 (266)
T ss_dssp             -CCTTTHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEE
T ss_pred             -cCCCcchhHHHHHHHHHHHHHHHHHHh--hcCcEEEE
Confidence             233322333332223345566777763  34454443

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=97.83  E-value=0.00013  Score=64.74  Aligned_cols=117  Identities=21%  Similarity=0.258  Sum_probs=69.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc----------hh----HHhhhhcccCCceEEEEe-cCCC--
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----------PG----VTADISHMDTNAVVRGFL-GQQQ--  107 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~----------~g----~~~DL~~~~~~~~v~~~~-~t~d--  107 (289)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|+++.          ..    ...++...  ..++..+. +-+|  
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~   87 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGA--DIIAVDLCDQIASVPYPLATPEELAATVKLVEDI--GSRIVARQADVRDRE   87 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHH--TCCEEEEECCTTCHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEecccccccccccccchHHHHHHHHHHHhc--CCeEEEEeCCCCCHH
Confidence            456899999999999999999999998  8999998720          11    11112211  12222221 1112  


Q ss_pred             -HHhhh-------CCCCEEEEcCCCCCCCC--CchhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecCC
Q 022947          108 -LEDAL-------TGMDIVIIPAGVPRKPG--MTRDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       108 -~~eal-------~~aDiVIitag~~~~~g--~~r~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~tNP  165 (289)
                       .++.+       ...|++|.+||......  ++-.+.+..|+..    .+.+.+.+.+....+.|+++|.-
T Consensus        88 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~  159 (278)
T 3sx2_A           88 SLSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSS  159 (278)
T ss_dssp             HHHHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCG
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccH
Confidence             22223       37899999999753221  1123455666554    44455555555556777777653

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=97.83  E-value=5.4e-05  Score=66.24  Aligned_cols=117  Identities=15%  Similarity=0.135  Sum_probs=66.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--hHHhhhhccc-----CCceEEEEe-cCCC---HHhhhCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMD-----TNAVVRGFL-GQQQ---LEDALTG  114 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g~~~DL~~~~-----~~~~v~~~~-~t~d---~~eal~~  114 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++..  ....++....     ...++..+. +-+|   +++.+++
T Consensus         7 ~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   84 (264)
T 2pd6_A            7 SALALVTGAGSGIGRAVSVRLAGEGA--TVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLEQ   84 (264)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHHH
Confidence            45899999999999999999999997  89999987521  1112222110     001222211 1122   2233333


Q ss_pred             -------C-CEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHH----hCCCcEEEEecC
Q 022947          115 -------M-DIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAK----CCPKAIVNLISN  164 (289)
Q Consensus       115 -------a-DiVIitag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~----~~p~aiviv~tN  164 (289)
                             . |+||.+||......   .+   ..+.+..|+.....+.+.+.+    ....+.|+++|.
T Consensus        85 ~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS  152 (264)
T 2pd6_A           85 VQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISS  152 (264)
T ss_dssp             HHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             HHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECC
Confidence                   3 99999999753211   11   233556676655555554443    332466776664

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=97.82  E-value=3.4e-05  Score=68.92  Aligned_cols=76  Identities=21%  Similarity=0.241  Sum_probs=50.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-c---h-hHHh---hhhcccCCceEEE--EecCCCHHhhhCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T---P-GVTA---DISHMDTNAVVRG--FLGQQQLEDALTGM  115 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~---~-g~~~---DL~~~~~~~~v~~--~~~t~d~~eal~~a  115 (289)
                      ++||.|+||+|++|++++..|+..|+  +|++++++. .   . ....   ++....  ..+..  +....++.++++++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~~~~~l~~~~--v~~v~~D~~d~~~l~~~~~~~   77 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGN--PTYALVRKTITAANPETKEELIDNYQSLG--VILLEGDINDHETLVKAIKQV   77 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTC--CEEEEECCSCCSSCHHHHHHHHHHHHHTT--CEEEECCTTCHHHHHHHHTTC
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCC--cEEEEECCCcccCChHHHHHHHHHHHhCC--CEEEEeCCCCHHHHHHHHhCC
Confidence            46899999999999999999988886  889998875 1   0 1111   221111  11111  11112466788999


Q ss_pred             CEEEEcCCCC
Q 022947          116 DIVIIPAGVP  125 (289)
Q Consensus       116 DiVIitag~~  125 (289)
                      |+||+++|..
T Consensus        78 d~vi~~a~~~   87 (307)
T 2gas_A           78 DIVICAAGRL   87 (307)
T ss_dssp             SEEEECSSSS
T ss_pred             CEEEECCccc
Confidence            9999998854

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=97.82  E-value=0.00012  Score=70.88  Aligned_cols=111  Identities=7%  Similarity=0.076  Sum_probs=70.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCC---CCEEEEc
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTG---MDIVIIP  121 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~---aDiVIit  121 (289)
                      .++||+|||+ |.+|+.++..|+..|+  +|.++|+++..  +.++........+..   ++++++++++   +|+||++
T Consensus        14 ~~~~IgvIGl-G~MG~~lA~~La~~G~--~V~v~~r~~~~--~~~l~~~~~~~gi~~---~~s~~e~v~~l~~aDvVil~   85 (480)
T 2zyd_A           14 SKQQIGVVGM-AVMGRNLALNIESRGY--TVSIFNRSREK--TEEVIAENPGKKLVP---YYTVKEFVESLETPRRILLM   85 (480)
T ss_dssp             -CBSEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSHHH--HHHHHHHSTTSCEEE---CSSHHHHHHTBCSSCEEEEC
T ss_pred             CCCeEEEEcc-HHHHHHHHHHHHhCCC--eEEEEeCCHHH--HHHHHhhCCCCCeEE---eCCHHHHHhCCCCCCEEEEE
Confidence            3458999998 9999999999999998  89999987521  122222100012332   3467777776   9999998


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHH
Q 022947          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFK  178 (289)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~  178 (289)
                      ...+    .           .++++++.+.... |+.+||..+|.....+....+.+.
T Consensus        86 Vp~~----~-----------~v~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~  128 (480)
T 2zyd_A           86 VKAG----A-----------GTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELS  128 (480)
T ss_dssp             SCSS----S-----------HHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHH
T ss_pred             CCCH----H-----------HHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHH
Confidence            6321    1           2444556666655 678888888876443332334443

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=97.81  E-value=6.4e-05  Score=66.06  Aligned_cols=111  Identities=19%  Similarity=0.193  Sum_probs=66.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCC---CHHhhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQ---QLEDAL-------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~---d~~eal-------  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++.     ..+..+. +-+   ++++.+       
T Consensus         5 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~   77 (254)
T 1hdc_A            5 GKTVIITGGARGLGAEAARQAVAAGA--RVVLADVLDEEGAATARELG-----DAARYQHLDVTIEEDWQRVVAYAREEF   77 (254)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTG-----GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CceeEEEecCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999997  8999998762  11112221     1111111 111   222233       


Q ss_pred             CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecC
Q 022947          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       113 ~~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~----~~i~~~i~~~~p~aiviv~tN  164 (289)
                      ...|++|.+||.....   ..+   ..+.+..|+...    +.+.+.+++.. .+.|+++|.
T Consensus        78 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  138 (254)
T 1hdc_A           78 GSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAG-GGSIVNISS  138 (254)
T ss_dssp             SCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEECc
Confidence            3899999999975321   111   223455665444    46666666553 456666654

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=97.81  E-value=9.2e-05  Score=64.10  Aligned_cols=116  Identities=18%  Similarity=0.208  Sum_probs=63.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEe-CCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYD-VVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD-~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal------  112 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|+++| +++.  .....++....  .++..+. +-+|   +++.+      
T Consensus         5 ~~~vlItGasggiG~~~a~~l~~~G~--~V~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   80 (247)
T 2hq1_A            5 GKTAIVTGSSRGLGKAIAWKLGNMGA--NIVLNGSPASTSLDATAEEFKAAG--INVVVAKGDVKNPEDVENMVKTAMDA   80 (247)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEECTTCSHHHHHHHHHHHTT--CCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCcCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHh
Confidence            45899999999999999999999997  899984 4442  11122222211  1222221 1122   22223      


Q ss_pred             -CCCCEEEEcCCCCCCC------CCchhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 022947          113 -TGMDIVIIPAGVPRKP------GMTRDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNP  165 (289)
Q Consensus       113 -~~aDiVIitag~~~~~------g~~r~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tNP  165 (289)
                       .+.|+||++||.....      .++..+.+..|+.....+.+.+.+.   .+.+.|+++|..
T Consensus        81 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~  143 (247)
T 2hq1_A           81 FGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSI  143 (247)
T ss_dssp             HSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred             cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCh
Confidence             3899999999875321      1123445667776654444444332   134667766654

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=97.81  E-value=0.00012  Score=65.66  Aligned_cols=139  Identities=17%  Similarity=0.195  Sum_probs=68.5

Q ss_pred             hcCCCccccccccccccccccccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccC
Q 022947           18 HLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT   95 (289)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~   95 (289)
                      |-||....=....+.|-+..-.+    +.+.+.|+||+|.+|..++..|+..|.  .|+++|++..  .....++.... 
T Consensus         4 ~~~~~~~~~~~~~~~~~~~m~~~----~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~-   76 (283)
T 3v8b_A            4 HHHHSSGVDLGTENLYFQSMMNQ----PSPVALITGAGSGIGRATALALAADGV--TVGALGRTRTEVEEVADEIVGAG-   76 (283)
T ss_dssp             ---------------------------CCCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHTTTT-
T ss_pred             ccCCccccccccchhhhhhhcCC----CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC-
Confidence            45665544444433333322122    235789999999999999999999997  8999998762  22223333221 


Q ss_pred             CceEEEEe-cCCC---HHhh-------hCCCCEEEEcCCCCCC--C--CCc---hhhHHHhhHHHH----HHHHHHHHHh
Q 022947           96 NAVVRGFL-GQQQ---LEDA-------LTGMDIVIIPAGVPRK--P--GMT---RDDLFNINAGIV----KTLCEGIAKC  153 (289)
Q Consensus        96 ~~~v~~~~-~t~d---~~ea-------l~~aDiVIitag~~~~--~--g~~---r~d~~~~N~~i~----~~i~~~i~~~  153 (289)
                       ..+..+. +-+|   .++.       +...|++|.+||....  +  ..+   ....+..|+...    +.+.+.+++.
T Consensus        77 -~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~  155 (283)
T 3v8b_A           77 -GQAIALEADVSDELQMRNAVRDLVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQR  155 (283)
T ss_dssp             -CCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred             -CcEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence             1222211 1112   2222       2489999999997432  2  122   223456665544    4444444554


Q ss_pred             CCCcEEEEecCC
Q 022947          154 CPKAIVNLISNP  165 (289)
Q Consensus       154 ~p~aiviv~tNP  165 (289)
                       ..+.|+++|.-
T Consensus       156 -~~g~Iv~isS~  166 (283)
T 3v8b_A          156 -GGGAIVVVSSI  166 (283)
T ss_dssp             -TCEEEEEECCS
T ss_pred             -CCceEEEEcCh
Confidence             35666666653

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=97.81  E-value=6.2e-05  Score=67.59  Aligned_cols=65  Identities=15%  Similarity=0.354  Sum_probs=48.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      +|||+|||+ |.+|..++..|...|+  +|+++|+++..  ...+...    .+..   .++++++++++|+||++.
T Consensus         4 ~~~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~~~--~~~~~~~----g~~~---~~~~~~~~~~~D~vi~~v   68 (301)
T 3cky_A            4 SIKIGFIGL-GAMGKPMAINLLKEGV--TVYAFDLMEAN--VAAVVAQ----GAQA---CENNQKVAAASDIIFTSL   68 (301)
T ss_dssp             CCEEEEECC-CTTHHHHHHHHHHTTC--EEEEECSSHHH--HHHHHTT----TCEE---CSSHHHHHHHCSEEEECC
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCHHH--HHHHHHC----CCee---cCCHHHHHhCCCEEEEEC
Confidence            579999998 9999999999998887  89999987521  1122221    1221   246778889999999985

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=97.80  E-value=7.1e-05  Score=66.28  Aligned_cols=117  Identities=15%  Similarity=0.074  Sum_probs=69.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeC-CCc--hhHHhhhhcccCCceEEEE----ecC----CCHHhhh--
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV-VNT--PGVTADISHMDTNAVVRGF----LGQ----QQLEDAL--  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~-~~~--~g~~~DL~~~~~~~~v~~~----~~t----~d~~eal--  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+ ++.  .....++.... ...+..+    +..    .+.++.+  
T Consensus        11 ~k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~   87 (276)
T 1mxh_A           11 CPAAVITGGARRIGHSIAVRLHQQGF--RVVVHYRHSEGAAQRLVAELNAAR-AGSAVLCKGDLSLSSSLLDCCEDIIDC   87 (276)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHHS-TTCEEEEECCCSSSTTHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHHhc-CCceEEEeccCCCccccHHHHHHHHHH
Confidence            45899999999999999999999997  8999998 542  21222232110 1122211    111    1222222  


Q ss_pred             -----CCCCEEEEcCCCCCCC---C--------------CchhhHHHhhHHHHHHHHHHHHHhC--CC------cEEEEe
Q 022947          113 -----TGMDIVIIPAGVPRKP---G--------------MTRDDLFNINAGIVKTLCEGIAKCC--PK------AIVNLI  162 (289)
Q Consensus       113 -----~~aDiVIitag~~~~~---g--------------~~r~d~~~~N~~i~~~i~~~i~~~~--p~------aiviv~  162 (289)
                           ...|++|.+||.....   .              ......+..|+.....+++.+.++-  ..      +.|+++
T Consensus        88 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~iv~i  167 (276)
T 1mxh_A           88 SFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNL  167 (276)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEE
T ss_pred             HHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEEEEE
Confidence                 3789999999964321   1              1122356677776666666666542  22      667777


Q ss_pred             cCC
Q 022947          163 SNP  165 (289)
Q Consensus       163 tNP  165 (289)
                      |..
T Consensus       168 sS~  170 (276)
T 1mxh_A          168 CDA  170 (276)
T ss_dssp             CCG
T ss_pred             Cch
Confidence            653

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.80  E-value=5.2e-05  Score=59.84  Aligned_cols=99  Identities=12%  Similarity=0.075  Sum_probs=58.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCC---HHhh-hCCCCEEEEc
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ---LEDA-LTGMDIVIIP  121 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d---~~ea-l~~aDiVIit  121 (289)
                      +++|.|+|+ |.+|..++..|...|.  +|+++|.++..  ...+....  .... .....+   +.++ +.++|+||++
T Consensus         6 ~~~v~I~G~-G~iG~~~a~~l~~~g~--~v~~~d~~~~~--~~~~~~~~--~~~~-~~d~~~~~~l~~~~~~~~d~vi~~   77 (144)
T 2hmt_A            6 NKQFAVIGL-GRFGGSIVKELHRMGH--EVLAVDINEEK--VNAYASYA--THAV-IANATEENELLSLGIRNFEYVIVA   77 (144)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CCEEEESCHHH--HHTTTTTC--SEEE-ECCTTCHHHHHTTTGGGCSEEEEC
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHhC--CEEE-EeCCCCHHHHHhcCCCCCCEEEEC
Confidence            457999998 9999999999998886  89999987521  11122111  1111 111112   2222 6789999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 022947          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV  166 (289)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPv  166 (289)
                      .+.+          ...|..    ++..+++.+|+.++...+||.
T Consensus        78 ~~~~----------~~~~~~----~~~~~~~~~~~~ii~~~~~~~  108 (144)
T 2hmt_A           78 IGAN----------IQASTL----TTLLLKELDIPNIWVKAQNYY  108 (144)
T ss_dssp             CCSC----------HHHHHH----HHHHHHHTTCSEEEEECCSHH
T ss_pred             CCCc----------hHHHHH----HHHHHHHcCCCeEEEEeCCHH
Confidence            7532          122332    344455567775555556654

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=97.79  E-value=8.4e-05  Score=66.16  Aligned_cols=92  Identities=11%  Similarity=0.017  Sum_probs=59.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      ||||+|||+ |.+|..++..|.. |+  +|.++|+++....  .+....    +...   + +.++++++|+||++...+
T Consensus         1 M~~i~iiG~-G~~G~~~a~~l~~-g~--~V~~~~~~~~~~~--~~~~~g----~~~~---~-~~~~~~~~D~vi~~v~~~   66 (289)
T 2cvz_A            1 MEKVAFIGL-GAMGYPMAGHLAR-RF--PTLVWNRTFEKAL--RHQEEF----GSEA---V-PLERVAEARVIFTCLPTT   66 (289)
T ss_dssp             -CCEEEECC-STTHHHHHHHHHT-TS--CEEEECSSTHHHH--HHHHHH----CCEE---C-CGGGGGGCSEEEECCSSH
T ss_pred             CCeEEEEcc-cHHHHHHHHHHhC-CC--eEEEEeCCHHHHH--HHHHCC----Cccc---C-HHHHHhCCCEEEEeCCCh
Confidence            368999998 9999999999988 87  8999998762211  111111    1111   1 346789999999986321


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 022947          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPV  166 (289)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPv  166 (289)
                                     ..++++++.+.+.. |+.+++..+|..
T Consensus        67 ---------------~~~~~v~~~l~~~l~~~~~vv~~s~~~   93 (289)
T 2cvz_A           67 ---------------REVYEVAEALYPYLREGTYWVDATSGE   93 (289)
T ss_dssp             ---------------HHHHHHHHHHTTTCCTTEEEEECSCCC
T ss_pred             ---------------HHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence                           11334445555544 567777667754

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=97.79  E-value=4e-05  Score=69.79  Aligned_cols=119  Identities=8%  Similarity=0.097  Sum_probs=71.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhccc----CCceEEEEecCCCHHhhhCCCCEEEEc
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----TNAVVRGFLGQQQLEDALTGMDIVIIP  121 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~----~~~~v~~~~~t~d~~eal~~aDiVIit  121 (289)
                      +|||+|||+ |.+|+.++..|. .|.  +|.++++++....  .+....    ..........+.+ .++..++|+||++
T Consensus         2 ~mkI~IiGa-Ga~G~~~a~~L~-~g~--~V~~~~r~~~~~~--~l~~~G~~~~~~~~~~~~~~~~~-~~~~~~~D~vila   74 (307)
T 3ego_A            2 SLKIGIIGG-GSVGLLCAYYLS-LYH--DVTVVTRRQEQAA--AIQSEGIRLYKGGEEFRADCSAD-TSINSDFDLLVVT   74 (307)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHH-TTS--EEEEECSCHHHHH--HHHHHCEEEEETTEEEEECCEEE-SSCCSCCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHh-cCC--ceEEEECCHHHHH--HHHhCCceEecCCCeeccccccc-ccccCCCCEEEEE
Confidence            479999998 999999999998 886  9999998752111  111100    0000000000111 2457899999998


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEE-eeecc
Q 022947          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG-VTMLD  195 (289)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG-~t~ld  195 (289)
                      .-    +.            .+.++++.++...++. |+.+.|-++..     +.+.+  -+|.++|++ ++...
T Consensus        75 vK----~~------------~~~~~l~~l~~~~~~~-ivs~~nGi~~~-----e~l~~--~~~~~~vl~g~~~~~  125 (307)
T 3ego_A           75 VK----QH------------QLQSVFSSLERIGKTN-ILFLQNGMGHI-----HDLKD--WHVGHSIYVGIVEHG  125 (307)
T ss_dssp             CC----GG------------GHHHHHHHTTSSCCCE-EEECCSSSHHH-----HHHHT--CCCSCEEEEEEECCE
T ss_pred             eC----HH------------HHHHHHHHhhcCCCCe-EEEecCCccHH-----HHHHH--hCCCCcEEEEEEeec
Confidence            52    11            1344556666555666 88889988753     23343  368888875 44443

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.79  E-value=0.00033  Score=61.83  Aligned_cols=116  Identities=22%  Similarity=0.274  Sum_probs=68.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal-------  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+++.  .....++.... ..++..+. +-+|   .++.+       
T Consensus        10 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   86 (262)
T 3pk0_A           10 GRSVVVTGGTKGIGRGIATVFARAGA--NVAVAGRSTADIDACVADLDQLG-SGKVIGVQTDVSDRAQCDALAGRAVEEF   86 (262)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTS-SSCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhC-CCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            45899999999999999999999998  8999998762  22233443321 12333221 1122   22222       


Q ss_pred             CCCCEEEEcCCCCCCC---CCch---hhHHHhhHHHHH----HHHHHHHHhCCCcEEEEecCC
Q 022947          113 TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVK----TLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       113 ~~aDiVIitag~~~~~---g~~r---~d~~~~N~~i~~----~i~~~i~~~~p~aiviv~tNP  165 (289)
                      ...|++|.+||.....   ..+.   ...+..|+....    .+.+.+.+.. .+.|+++|..
T Consensus        87 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS~  148 (262)
T 3pk0_A           87 GGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASG-SGRVVLTSSI  148 (262)
T ss_dssp             SCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHS-SCEEEEECCS
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEech
Confidence            3899999999975321   1122   234566655444    4444444433 4556666543

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=97.79  E-value=5.5e-05  Score=66.46  Aligned_cols=115  Identities=17%  Similarity=0.098  Sum_probs=66.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal-------  112 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++....  ..+..+. +-.+   +++.+       
T Consensus        14 ~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   89 (266)
T 1xq1_A           14 AKTVLVTGGTKGIGHAIVEEFAGFGA--VIHTCARNEYELNECLSKWQKKG--FQVTGSVCDASLRPEREKLMQTVSSMF   89 (266)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHHHh
Confidence            45899999999999999999999997  8999998752  11222232211  1222211 1112   22223       


Q ss_pred             -CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHH----HHhCCCcEEEEecCC
Q 022947          113 -TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNP  165 (289)
Q Consensus       113 -~~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i----~~~~p~aiviv~tNP  165 (289)
                       ...|+||++||.....   ..+   ..+.+..|+.....+.+.+    ++.. .+.|+++|..
T Consensus        90 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~isS~  152 (266)
T 1xq1_A           90 GGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASG-CGNIIFMSSI  152 (266)
T ss_dssp             TTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCEEEEEC--
T ss_pred             CCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEccc
Confidence             5789999999864321   111   2335667776655555554    4443 4556666653

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.78  E-value=4.3e-05  Score=65.93  Aligned_cols=75  Identities=21%  Similarity=0.166  Sum_probs=49.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCC--CccEEEEEeCCCchh-HHhhhhcccCCceEEEEe-cCCC---HHhhhC-----
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINP--LVSVLHLYDVVNTPG-VTADISHMDTNAVVRGFL-GQQQ---LEDALT-----  113 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g--~~~eI~LvD~~~~~g-~~~DL~~~~~~~~v~~~~-~t~d---~~eal~-----  113 (289)
                      +++|.|+||+|.+|..++..|+..|  .  +|+++|++.... ...++   . ...+..+. +-+|   +++.++     
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~g~~~--~V~~~~r~~~~~~~l~~~---~-~~~~~~~~~D~~~~~~~~~~~~~~~~~   76 (250)
T 1yo6_A            3 PGSVVVTGANRGIGLGLVQQLVKDKNIR--HIIATARDVEKATELKSI---K-DSRVHVLPLTVTCDKSLDTFVSKVGEI   76 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCC--EEEEEESSGGGCHHHHTC---C-CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEecCCchHHHHHHHHHHhcCCCc--EEEEEecCHHHHHHHHhc---c-CCceEEEEeecCCHHHHHHHHHHHHHh
Confidence            4689999999999999999999998  6  999999876221 12222   1 12222221 1112   233333     


Q ss_pred             ----CCCEEEEcCCCCC
Q 022947          114 ----GMDIVIIPAGVPR  126 (289)
Q Consensus       114 ----~aDiVIitag~~~  126 (289)
                          +.|+||++||...
T Consensus        77 ~g~~~id~li~~Ag~~~   93 (250)
T 1yo6_A           77 VGSDGLSLLINNAGVLL   93 (250)
T ss_dssp             HGGGCCCEEEECCCCCC
T ss_pred             cCCCCCcEEEECCcccC
Confidence                8999999998754

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=97.78  E-value=3.4e-05  Score=70.73  Aligned_cols=66  Identities=18%  Similarity=0.172  Sum_probs=48.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCC-CccEEEEEeCCCc---h--hHHhhhhcccCCceEEEEecCC-CHHhhhCCCCEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNT---P--GVTADISHMDTNAVVRGFLGQQ-QLEDALTGMDIV  118 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g-~~~eI~LvD~~~~---~--g~~~DL~~~~~~~~v~~~~~t~-d~~eal~~aDiV  118 (289)
                      +|||+|||+ |.+|..++..|+..| +  +|.++|+++.   +  .....+....    +     .+ ++++++++||+|
T Consensus        24 ~m~IgvIG~-G~mG~~lA~~L~~~G~~--~V~~~dr~~~~~~~~~~~~~~~~~~g----~-----~~~s~~e~~~~aDvV   91 (317)
T 4ezb_A           24 MTTIAFIGF-GEAAQSIAGGLGGRNAA--RLAAYDLRFNDPAASGALRARAAELG----V-----EPLDDVAGIACADVV   91 (317)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTCS--EEEEECGGGGCTTTHHHHHHHHHHTT----C-----EEESSGGGGGGCSEE
T ss_pred             CCeEEEECc-cHHHHHHHHHHHHcCCC--eEEEEeCCCccccchHHHHHHHHHCC----C-----CCCCHHHHHhcCCEE
Confidence            469999998 999999999999999 7  9999998751   1  1222222211    1     12 456889999999


Q ss_pred             EEcCC
Q 022947          119 IIPAG  123 (289)
Q Consensus       119 Iitag  123 (289)
                      |++..
T Consensus        92 i~avp   96 (317)
T 4ezb_A           92 LSLVV   96 (317)
T ss_dssp             EECCC
T ss_pred             EEecC
Confidence            99863

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=97.78  E-value=0.00019  Score=62.61  Aligned_cols=105  Identities=16%  Similarity=0.211  Sum_probs=68.1

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchh---HHhhhhcccCCceEEEEecCCCHHhhh----CCCCEEE
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMDTNAVVRGFLGQQQLEDAL----TGMDIVI  119 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g---~~~DL~~~~~~~~v~~~~~t~d~~eal----~~aDiVI  119 (289)
                      ++|.|+||+|.+|..++..|+..|.  +|+++|+++...   ...|+.+..            +.++++    ...|++|
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~Dl~~~~------------~v~~~~~~~~~~id~lv   67 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGH--QIVGIDIRDAEVIADLSTAEGRKQ------------AIADVLAKCSKGMDGLV   67 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSSSEECCTTSHHHHHH------------HHHHHHTTCTTCCSEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCchhhccccccCCCCHH------------HHHHHHHHhCCCCCEEE
Confidence            4799999999999999999999997  899999876211   223333321            223334    4559999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecCCC
Q 022947          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPV  166 (289)
Q Consensus       120 itag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tNPv  166 (289)
                      .+||..... ....+.+..|+.....+.+.+.++   ...+.|+++|...
T Consensus        68 ~~Ag~~~~~-~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~  116 (257)
T 1fjh_A           68 LCAGLGPQT-KVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVA  116 (257)
T ss_dssp             ECCCCCTTC-SSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGG
T ss_pred             ECCCCCCCc-ccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChh
Confidence            999976422 224556677766655555555432   2346677766543

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=97.77  E-value=2.6e-05  Score=67.96  Aligned_cols=111  Identities=14%  Similarity=0.112  Sum_probs=66.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhh-------h--CCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDA-------L--TGMD  116 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~ea-------l--~~aD  116 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++..... +. .. ...++.   ...+.++.       +  .+.|
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~-~~-~~-~~~D~~---~~~~v~~~~~~~~~~~~~g~iD   78 (241)
T 1dhr_A            7 ARRVLVYGGRGALGSRCVQAFRARNW--WVASIDVVENEEAS-AS-VI-VKMTDS---FTEQADQVTAEVGKLLGDQKVD   78 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSCCTTSS-EE-EE-CCCCSC---HHHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCChhhccC-Cc-EE-EEcCCC---CHHHHHHHHHHHHHHhCCCCCC
Confidence            45899999999999999999999997  89999987621110 00 00 000110   00111122       2  4799


Q ss_pred             EEEEcCCCCCCC----CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 022947          117 IVIIPAGVPRKP----GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (289)
Q Consensus       117 iVIitag~~~~~----g~~---r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tN  164 (289)
                      ++|.+||.....    ..+   ..+.+..|+.....+.+.+.+.- ..+.|+++|.
T Consensus        79 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS  134 (241)
T 1dhr_A           79 AILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGA  134 (241)
T ss_dssp             EEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECC
Confidence            999999964321    111   23356677777666666665542 2466777664

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=97.77  E-value=9.8e-05  Score=63.90  Aligned_cols=114  Identities=18%  Similarity=0.115  Sum_probs=66.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhH--HhhhhcccCCceEEEE--ecCCCHHhhhC---CCCEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVRGF--LGQQQLEDALT---GMDIV  118 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~--~~DL~~~~~~~~v~~~--~~t~d~~eal~---~aDiV  118 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++....  ..++.    .......  ....++++.++   ..|+|
T Consensus         7 ~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~~~~~id~v   80 (244)
T 3d3w_A            7 GRRVLVTGAGKGIGRGTVQALHATGA--RVVAVSRTQADLDSLVRECP----GIEPVCVDLGDWEATERALGSVGPVDLL   80 (244)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHST----TCEEEECCTTCHHHHHHHHTTCCCCCEE
T ss_pred             CcEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcC----CCCEEEEeCCCHHHHHHHHHHcCCCCEE
Confidence            35899999999999999999999997  8999998752111  11111    1111111  11112333343   58999


Q ss_pred             EEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHH----HHHhCCCcEEEEecCC
Q 022947          119 IIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEG----IAKCCPKAIVNLISNP  165 (289)
Q Consensus       119 Iitag~~~~~g---~~---r~d~~~~N~~i~~~i~~~----i~~~~p~aiviv~tNP  165 (289)
                      |.+||......   .+   ....+..|+.....+.+.    +.+....+.|+++|..
T Consensus        81 i~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~  137 (244)
T 3d3w_A           81 VNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQ  137 (244)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCG
T ss_pred             EECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCch
Confidence            99998753211   11   234566676664444444    4333425667776654

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=97.77  E-value=0.00064  Score=61.01  Aligned_cols=117  Identities=11%  Similarity=0.122  Sum_probs=73.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh------
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL------  112 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal------  112 (289)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|+++.  .....++.... ..++..+. +-+|   .++.+      
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~  122 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGA--NIAIAYLDEEGDANETKQYVEKE-GVKCVLLPGDLSDEQHCKDIVQETVRQ  122 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHTT-TCCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhc-CCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            456899999999999999999999997  8999998862  11112221111 12222221 1122   22222      


Q ss_pred             -CCCCEEEEcCCCCCCCC----Cc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 022947          113 -TGMDIVIIPAGVPRKPG----MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (289)
Q Consensus       113 -~~aDiVIitag~~~~~g----~~---r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tN  164 (289)
                       ...|++|.+||.....+    .+   -...+..|+.....+.+.+..+- ..+.|+++|.
T Consensus       123 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS  183 (291)
T 3ijr_A          123 LGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTAS  183 (291)
T ss_dssp             HSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECC
T ss_pred             cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEec
Confidence             37899999998643221    11   23467788888888888777653 3556766654

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=97.77  E-value=0.0002  Score=62.79  Aligned_cols=101  Identities=14%  Similarity=0.159  Sum_probs=60.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCC---CccEEEEEeCCCch-hHHhhhhcccCCceEEEEe----cCCCHHhhhC----
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINP---LVSVLHLYDVVNTP-GVTADISHMDTNAVVRGFL----GQQQLEDALT----  113 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g---~~~eI~LvD~~~~~-g~~~DL~~~~~~~~v~~~~----~t~d~~eal~----  113 (289)
                      +++|.|+||+|.+|..++..|+..|   .  +|+++|++... ....++....  .++..+.    ...++++.++    
T Consensus        21 ~k~vlITGasggIG~~la~~L~~~G~~~~--~V~~~~r~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~   96 (267)
T 1sny_A           21 MNSILITGCNRGLGLGLVKALLNLPQPPQ--HLFTTCRNREQAKELEDLAKNH--SNIHILEIDLRNFDAYDKLVADIEG   96 (267)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCS--EEEEEESCTTSCHHHHHHHHHC--TTEEEEECCTTCGGGHHHHHHHHHH
T ss_pred             CCEEEEECCCCcHHHHHHHHHHhcCCCCc--EEEEEecChhhhHHHHHhhccC--CceEEEEecCCChHHHHHHHHHHHH
Confidence            4589999999999999999999988   6  89999998622 1222332211  1222211    1123334443    


Q ss_pred             -----CCCEEEEcCCCCCCCC----Cc---hhhHHHhhHHHHHHHHHHH
Q 022947          114 -----GMDIVIIPAGVPRKPG----MT---RDDLFNINAGIVKTLCEGI  150 (289)
Q Consensus       114 -----~aDiVIitag~~~~~g----~~---r~d~~~~N~~i~~~i~~~i  150 (289)
                           ..|++|.+||.....+    .+   ....+..|+.....+.+.+
T Consensus        97 ~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~  145 (267)
T 1sny_A           97 VTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKAC  145 (267)
T ss_dssp             HHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             hcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHH
Confidence                 7999999999754111    11   2234556655444444444

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=97.76  E-value=9.3e-05  Score=63.73  Aligned_cols=114  Identities=15%  Similarity=0.139  Sum_probs=65.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--hHHhhhhcccCCceEEE-EecCCCHHhh-------hCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRG-FLGQQQLEDA-------LTGM  115 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g~~~DL~~~~~~~~v~~-~~~t~d~~ea-------l~~a  115 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++..  ....++...   ..+.. .....++++.       +.+.
T Consensus         5 ~k~vlVtGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~D~~~~~~~~~~~~~~~~~~~~i   79 (234)
T 2ehd_A            5 KGAVLITGASRGIGEATARLLHAKGY--RVGLMARDEKRLQALAAELEGA---LPLPGDVREEGDWARAVAAMEEAFGEL   79 (234)
T ss_dssp             CCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHSTTC---EEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhhc---eEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            34799999999999999999999997  89999987521  111111110   00110 0001112222       2478


Q ss_pred             CEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHH----HHHHHHHHhCCCcEEEEecCC
Q 022947          116 DIVIIPAGVPRKPG---MT---RDDLFNINAGIVK----TLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       116 DiVIitag~~~~~g---~~---r~d~~~~N~~i~~----~i~~~i~~~~p~aiviv~tNP  165 (289)
                      |++|.+||......   .+   ..+.+..|+....    .+.+.+++. ..+.|+++|..
T Consensus        80 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~~~iv~isS~  138 (234)
T 2ehd_A           80 SALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRR-GGGTIVNVGSL  138 (234)
T ss_dssp             CEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT-TCEEEEEECCT
T ss_pred             CEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCcEEEEECCc
Confidence            99999998753211   11   2335566665544    444545443 34666666643

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=97.76  E-value=0.00017  Score=64.15  Aligned_cols=116  Identities=16%  Similarity=0.164  Sum_probs=69.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal-------  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++....  .++..+. +-+|   +++.+       
T Consensus        22 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   97 (277)
T 2rhc_B           22 SEVALVTGATSGIGLEIARRLGKEGL--RVFVCARGEEGLRTTLKELREAG--VEADGRTCDVRSVPEIEALVAAVVERY   97 (277)
T ss_dssp             SCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHh
Confidence            35899999999999999999999997  8999998762  11222332211  1222211 1112   22222       


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHh-----CCCcEEEEecCC
Q 022947          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC-----CPKAIVNLISNP  165 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~-----~p~aiviv~tNP  165 (289)
                      ...|++|.+||......   .+   ..+.+..|+.....+++.+.+.     ...+.|+++|..
T Consensus        98 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~  161 (277)
T 2rhc_B           98 GPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIAST  161 (277)
T ss_dssp             CSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCG
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECcc
Confidence            37999999999753211   11   2345667777666666654433     124567766643

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=97.76  E-value=7.5e-05  Score=69.08  Aligned_cols=104  Identities=16%  Similarity=0.114  Sum_probs=66.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEec-----CCCHHhhhCCCCEEEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-----QQQLEDALTGMDIVII  120 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~-----t~d~~eal~~aDiVIi  120 (289)
                      +|||.|+||+|++|++++..|+..|+  +|++++++.......++...   ..+..+.+     ..++.++++++|+||+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~l~~~---~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~   79 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVGH--HVRAQVHSLKGLIAEELQAI---PNVTLFQGPLLNNVPLMDTLFEGAHLAFI   79 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCSCSHHHHHHHTS---TTEEEEESCCTTCHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCCChhhHHHHhhc---CCcEEEECCccCCHHHHHHHHhcCCEEEE
Confidence            46899999999999999999988887  89999987632222223221   11222111     1235677899999998


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 022947          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNP  165 (289)
Q Consensus       121 tag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNP  165 (289)
                      +++...   .      ..|... +.+++.+++.. .. .++.+|..
T Consensus        80 ~a~~~~---~------~~~~~~-~~l~~aa~~~g~v~-~~V~~SS~  114 (352)
T 1xgk_A           80 NTTSQA---G------DEIAIG-KDLADAAKRAGTIQ-HYIYSSMP  114 (352)
T ss_dssp             CCCSTT---S------CHHHHH-HHHHHHHHHHSCCS-EEEEEECC
T ss_pred             cCCCCC---c------HHHHHH-HHHHHHHHHcCCcc-EEEEeCCc
Confidence            875431   1      125444 77888887775 44 44555543

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=97.76  E-value=4.5e-05  Score=67.78  Aligned_cols=113  Identities=16%  Similarity=0.080  Sum_probs=68.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEe-cCCC---HHhhh-------CC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------TG  114 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal-------~~  114 (289)
                      +++|.|+||+|++|.+++..|+..|.  +|++.|++.....  ++.... ...+..+. +-+|   .++.+       .+
T Consensus         5 ~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~--~~~~~~-~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~   79 (281)
T 3m1a_A            5 AKVWLVTGASSGFGRAIAEAAVAAGD--TVIGTARRTEALD--DLVAAY-PDRAEAISLDVTDGERIDVVAADVLARYGR   79 (281)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGH--HHHHHC-TTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHHhc-cCCceEEEeeCCCHHHHHHHHHHHHHhCCC
Confidence            45899999999999999999999997  8999998762111  111110 11222111 1112   22223       37


Q ss_pred             CCEEEEcCCCCCCC---CCc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 022947          115 MDIVIIPAGVPRKP---GMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       115 aDiVIitag~~~~~---g~~---r~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      .|++|++||.....   ..+   -...+..|+..    .+.+.+.+++.. .+.|+++|.
T Consensus        80 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~~iv~~sS  138 (281)
T 3m1a_A           80 VDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERG-SGSVVNISS  138 (281)
T ss_dssp             CSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEEcC
Confidence            89999999864211   112   23356677766    677777776654 355666554

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=97.76  E-value=7.1e-05  Score=65.16  Aligned_cols=114  Identities=17%  Similarity=0.174  Sum_probs=65.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEE-ecCCC---HHhhh---CCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGF-LGQQQ---LEDAL---TGM  115 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~-~~t~d---~~eal---~~a  115 (289)
                      +.++|.|+||+|.+|..++..|+..|.  +|++.|+++.  .....++..     .+... .+-++   ..+.+   ...
T Consensus        13 ~~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~i   85 (249)
T 3f9i_A           13 TGKTSLITGASSGIGSAIARLLHKLGS--KVIISGSNEEKLKSLGNALKD-----NYTIEVCNLANKEECSNLISKTSNL   85 (249)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCS-----SEEEEECCTTSHHHHHHHHHTCSCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhcc-----CccEEEcCCCCHHHHHHHHHhcCCC
Confidence            356899999999999999999999997  8999998762  111122211     11111 11112   22223   378


Q ss_pred             CEEEEcCCCCCCC------CCchhhHHHhhHHHHHHH----HHHHHHhCCCcEEEEecCCC
Q 022947          116 DIVIIPAGVPRKP------GMTRDDLFNINAGIVKTL----CEGIAKCCPKAIVNLISNPV  166 (289)
Q Consensus       116 DiVIitag~~~~~------g~~r~d~~~~N~~i~~~i----~~~i~~~~p~aiviv~tNPv  166 (289)
                      |++|.+||.....      .++-.+.+..|+.....+    .+.+.+. ..+.|+++|...
T Consensus        86 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~g~iv~isS~~  145 (249)
T 3f9i_A           86 DILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQK-RYGRIINISSIV  145 (249)
T ss_dssp             SEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCCC
T ss_pred             CEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEEccHH
Confidence            9999999864321      112334566665544444    4444433 456677776544

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=97.75  E-value=9.8e-05  Score=65.40  Aligned_cols=136  Identities=15%  Similarity=0.170  Sum_probs=65.0

Q ss_pred             hcCCCccccccccccccccccccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEe-CCCc--hhHHhhhhccc
Q 022947           18 HLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYD-VVNT--PGVTADISHMD   94 (289)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD-~~~~--~g~~~DL~~~~   94 (289)
                      |-|||-..---+-.+|..|.       ++++|.|+||+|.+|..++..|+..|.  +|++.+ .++.  .....++... 
T Consensus         5 ~~~~~~~~~~~~n~~~~~m~-------~~k~vlITGas~gIG~a~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~-   74 (272)
T 4e3z_A            5 HHHSSGVDLGTENLYFQSMS-------DTPVVLVTGGSRGIGAAVCRLAARQGW--RVGVNYAANREAADAVVAAITES-   74 (272)
T ss_dssp             -------------------C-------CSCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT-
T ss_pred             cCCCCCCCCCChhhhhhhcc-------CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCChhHHHHHHHHHHhc-
Confidence            45555433333334444443       234799999999999999999999997  787764 4331  1122222221 


Q ss_pred             CCceEEEEe-cCCC---HHhhh-------CCCCEEEEcCCCCCCCC----Cc---hhhHHHhhHHHHHHH----HHHHHH
Q 022947           95 TNAVVRGFL-GQQQ---LEDAL-------TGMDIVIIPAGVPRKPG----MT---RDDLFNINAGIVKTL----CEGIAK  152 (289)
Q Consensus        95 ~~~~v~~~~-~t~d---~~eal-------~~aDiVIitag~~~~~g----~~---r~d~~~~N~~i~~~i----~~~i~~  152 (289)
                       ..++..+. +-+|   .++.+       ...|++|.+||....++    .+   -.+.+..|+.....+    .+.+.+
T Consensus        75 -~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~  153 (272)
T 4e3z_A           75 -GGEAVAIPGDVGNAADIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSR  153 (272)
T ss_dssp             -TCEEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCG
T ss_pred             -CCcEEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence             12233221 1112   22222       37899999999754321    11   223456665544444    444443


Q ss_pred             h--CCCcEEEEecC
Q 022947          153 C--CPKAIVNLISN  164 (289)
Q Consensus       153 ~--~p~aiviv~tN  164 (289)
                      .  ...+.|+++|.
T Consensus       154 ~~~~~~g~iv~isS  167 (272)
T 4e3z_A          154 LYSGQGGAIVNVSS  167 (272)
T ss_dssp             GGTCCCEEEEEECC
T ss_pred             hccCCCCEEEEEcc
Confidence            2  23566777664

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.75  E-value=0.00011  Score=65.10  Aligned_cols=117  Identities=17%  Similarity=0.175  Sum_probs=64.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhc-ccCCceEEEEe-cCC---CHHhhhC-----
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISH-MDTNAVVRGFL-GQQ---QLEDALT-----  113 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~-~~~~~~v~~~~-~t~---d~~eal~-----  113 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++.. .....++..+. +-+   ++++.++     
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (278)
T 1spx_A            6 EKVAIITGSSNGIGRATAVLFAREGA--KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   83 (278)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHHH
Confidence            45799999999999999999999997  8999998752  111222310 00011222221 111   2333344     


Q ss_pred             --CCCEEEEcCCCCCCC---CC----c---hhhHHHhhHHHHHHHH----HHHHHhCCCcEEEEecCCC
Q 022947          114 --GMDIVIIPAGVPRKP---GM----T---RDDLFNINAGIVKTLC----EGIAKCCPKAIVNLISNPV  166 (289)
Q Consensus       114 --~aDiVIitag~~~~~---g~----~---r~d~~~~N~~i~~~i~----~~i~~~~p~aiviv~tNPv  166 (289)
                        +.|++|.+||.....   ..    +   -...+..|+.....+.    +.+++..  +.|+++|...
T Consensus        84 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--g~iv~isS~~  150 (278)
T 1spx_A           84 FGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK--GEIVNISSIA  150 (278)
T ss_dssp             HSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCTT
T ss_pred             cCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC--CeEEEEeccc
Confidence              899999999864321   11    2   1234556655444444    4443333  6677766543

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=97.74  E-value=0.00017  Score=63.98  Aligned_cols=115  Identities=15%  Similarity=0.096  Sum_probs=67.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal-------  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++....  ..+..+. +-+|   .++.+       
T Consensus        21 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   96 (273)
T 1ae1_A           21 GTTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLSRTERDKLMQTVAHVF   96 (273)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999999997  8999998762  11222232211  1222211 1112   22222       


Q ss_pred             -CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHH----HHHHHhCCCcEEEEecCC
Q 022947          113 -TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLC----EGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       113 -~~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~~~i~----~~i~~~~p~aiviv~tNP  165 (289)
                       ...|++|.+||.....   ..+   ....+..|+.....+.    +.+++. ..+.|+++|..
T Consensus        97 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~-~~g~iv~isS~  159 (273)
T 1ae1_A           97 DGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKAS-QNGNVIFLSSI  159 (273)
T ss_dssp             TSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSEEEEEECCG
T ss_pred             CCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcCH
Confidence             5799999999975321   112   2234555655444444    444443 34667766653

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=97.74  E-value=0.0001  Score=64.95  Aligned_cols=115  Identities=17%  Similarity=0.200  Sum_probs=68.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--hHHhhhhcccCCceEEEEe-cCCC---HHhhhC-----
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFL-GQQQ---LEDALT-----  113 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g~~~DL~~~~~~~~v~~~~-~t~d---~~eal~-----  113 (289)
                      +.++|.|+||+|.+|..++..|+..|.  +|+++|++...  ....++...   ..+..+. +-+|   +++.++     
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~   89 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVRYGA--KVVIADIADDHGQKVCNNIGSP---DVISFVHCDVTKDEDVRNLVDTTIAK   89 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCChhHHHHHHHHhCCC---CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999997  89999987521  112222111   1222211 1112   223333     


Q ss_pred             --CCCEEEEcCCCCCCC-----CCc---hhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 022947          114 --GMDIVIIPAGVPRKP-----GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (289)
Q Consensus       114 --~aDiVIitag~~~~~-----g~~---r~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tN  164 (289)
                        +.|+||.+||.....     ..+   ..+.+..|+.....+.+.+.+.   ...+.|+++|.
T Consensus        90 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS  153 (278)
T 2bgk_A           90 HGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTAS  153 (278)
T ss_dssp             HSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECC
T ss_pred             cCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEee
Confidence              799999999865321     111   2345667766665555555443   23566666654

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=97.73  E-value=0.00018  Score=63.35  Aligned_cols=115  Identities=20%  Similarity=0.177  Sum_probs=68.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal-------  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+++.  .....++....  .++..+. +-+|   .++.+       
T Consensus        12 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~   87 (256)
T 3gaf_A           12 DAVAIVTGAAAGIGRAIAGTFAKAGA--SVVVTDLKSEGAEAVAAAIRQAG--GKAIGLECNVTDEQHREAVIKAALDQF   87 (256)
T ss_dssp             TCEEEECSCSSHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999997  8999998762  22223333221  2222211 1112   22222       


Q ss_pred             CCCCEEEEcCCCCCCC--CCc---hhhHHHhhHHHHHHHHHH----HHHhCCCcEEEEecCC
Q 022947          113 TGMDIVIIPAGVPRKP--GMT---RDDLFNINAGIVKTLCEG----IAKCCPKAIVNLISNP  165 (289)
Q Consensus       113 ~~aDiVIitag~~~~~--g~~---r~d~~~~N~~i~~~i~~~----i~~~~p~aiviv~tNP  165 (289)
                      ...|++|.+||.....  ..+   -...+..|+.....+.+.    +++. ..+.|+++|..
T Consensus        88 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~  148 (256)
T 3gaf_A           88 GKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKA-GGGAILNISSM  148 (256)
T ss_dssp             SCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCG
T ss_pred             CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcCH
Confidence            3789999999975322  122   223456665554444444    4433 45677777653

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.72  E-value=5.1e-05  Score=61.02  Aligned_cols=93  Identities=12%  Similarity=0.127  Sum_probs=62.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchh--HHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g--~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      .+||+|||+ |.+|..++..|...|.  +|.++|+++...  .+.++.     ..+..   .+++++.++++|+||.+.+
T Consensus        21 ~~~v~iiG~-G~iG~~~a~~l~~~g~--~v~v~~r~~~~~~~~a~~~~-----~~~~~---~~~~~~~~~~~Divi~at~   89 (144)
T 3oj0_A           21 GNKILLVGN-GMLASEIAPYFSYPQY--KVTVAGRNIDHVRAFAEKYE-----YEYVL---INDIDSLIKNNDVIITATS   89 (144)
T ss_dssp             CCEEEEECC-SHHHHHHGGGCCTTTC--EEEEEESCHHHHHHHHHHHT-----CEEEE---CSCHHHHHHTCSEEEECSC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCCHHHHHHHHHHhC-----CceEe---ecCHHHHhcCCCEEEEeCC
Confidence            459999998 9999999988888776  699999876221  122221     12221   3467788999999999876


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcc
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS  168 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~  168 (289)
                      .+.. -...                  ....|..+++.+++|.++
T Consensus        90 ~~~~-~~~~------------------~~l~~g~~vid~~~p~~~  115 (144)
T 3oj0_A           90 SKTP-IVEE------------------RSLMPGKLFIDLGNPPNI  115 (144)
T ss_dssp             CSSC-SBCG------------------GGCCTTCEEEECCSSCSB
T ss_pred             CCCc-EeeH------------------HHcCCCCEEEEccCCccC
Confidence            5421 1100                  112357889999999865

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=97.72  E-value=8e-05  Score=65.54  Aligned_cols=115  Identities=13%  Similarity=0.119  Sum_probs=66.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal-------  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++.... ..++..+. +-+|   +++.+       
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (263)
T 3ai3_A            7 GKVAVITGSSSGIGLAIAEGFAKEGA--HIVLVARQVDRLHEAARSLKEKF-GVRVLEVAVDVATPEGVDAVVESVRSSF   83 (263)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHHhc-CCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999997  8999998762  11122222110 11222211 1112   22233       


Q ss_pred             CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecC
Q 022947          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       113 ~~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~----~~i~~~i~~~~p~aiviv~tN  164 (289)
                      .+.|++|.+||.....   ..+   ....+..|+...    +.+.+.+++.. .+.|+++|.
T Consensus        84 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS  144 (263)
T 3ai3_A           84 GGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARG-GGAIIHNAS  144 (263)
T ss_dssp             SSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECc
Confidence            3899999999975321   112   123455565544    44444444443 456666654

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=97.72  E-value=0.00018  Score=63.56  Aligned_cols=70  Identities=11%  Similarity=0.017  Sum_probs=48.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEe-cCCCHHhhhCCCCEEEEcCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~-~t~d~~eal~~aDiVIitag  123 (289)
                      ++|||.|+|| |++|++++..|+..|+  +|+.+++++....  .+...    .+..+. +-.|+ + ++++|+||++|+
T Consensus         4 m~~~ilVtGa-G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~----~~~~~~~D~~d~-~-~~~~d~vi~~a~   72 (286)
T 3ius_A            4 MTGTLLSFGH-GYTARVLSRALAPQGW--RIIGTSRNPDQME--AIRAS----GAEPLLWPGEEP-S-LDGVTHLLISTA   72 (286)
T ss_dssp             -CCEEEEETC-CHHHHHHHHHHGGGTC--EEEEEESCGGGHH--HHHHT----TEEEEESSSSCC-C-CTTCCEEEECCC
T ss_pred             CcCcEEEECC-cHHHHHHHHHHHHCCC--EEEEEEcChhhhh--hHhhC----CCeEEEeccccc-c-cCCCCEEEECCC
Confidence            3579999998 9999999999999997  9999998763211  11211    122221 12344 3 899999999998


Q ss_pred             CC
Q 022947          124 VP  125 (289)
Q Consensus       124 ~~  125 (289)
                      ..
T Consensus        73 ~~   74 (286)
T 3ius_A           73 PD   74 (286)
T ss_dssp             CB
T ss_pred             cc
Confidence            54

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.72  E-value=0.00016  Score=58.71  Aligned_cols=71  Identities=13%  Similarity=0.141  Sum_probs=45.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCC---HHhh-hCCCCEEEEc
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ---LEDA-LTGMDIVIIP  121 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d---~~ea-l~~aDiVIit  121 (289)
                      .++|+|+|+ |.+|..++..|...|.  +|+++|.++...  ..+.... ...+. .....+   +.++ +.++|+||++
T Consensus        19 ~~~v~IiG~-G~iG~~la~~L~~~g~--~V~vid~~~~~~--~~~~~~~-g~~~~-~~d~~~~~~l~~~~~~~ad~Vi~~   91 (155)
T 2g1u_A           19 SKYIVIFGC-GRLGSLIANLASSSGH--SVVVVDKNEYAF--HRLNSEF-SGFTV-VGDAAEFETLKECGMEKADMVFAF   91 (155)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCGGGG--GGSCTTC-CSEEE-ESCTTSHHHHHTTTGGGCSEEEEC
T ss_pred             CCcEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHH--HHHHhcC-CCcEE-EecCCCHHHHHHcCcccCCEEEEE
Confidence            569999998 9999999999999887  999999876221  1122010 11111 111112   3233 6789999998


Q ss_pred             CC
Q 022947          122 AG  123 (289)
Q Consensus       122 ag  123 (289)
                      .+
T Consensus        92 ~~   93 (155)
T 2g1u_A           92 TN   93 (155)
T ss_dssp             SS
T ss_pred             eC
Confidence            65

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=97.72  E-value=0.00016  Score=63.50  Aligned_cols=114  Identities=18%  Similarity=0.175  Sum_probs=66.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal-------  112 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++....  ..+..+. +-.|   .++.+       
T Consensus        14 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   89 (260)
T 2zat_A           14 NKVALVTASTDGIGLAIARRLAQDGA--HVVVSSRKQENVDRTVATLQGEG--LSVTGTVCHVGKAEDRERLVAMAVNLH   89 (260)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999997  8999998762  22222332211  1222211 1112   22223       


Q ss_pred             CCCCEEEEcCCCCCC--C--CCc---hhhHHHhhHHHHHH----HHHHHHHhCCCcEEEEecC
Q 022947          113 TGMDIVIIPAGVPRK--P--GMT---RDDLFNINAGIVKT----LCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       113 ~~aDiVIitag~~~~--~--g~~---r~d~~~~N~~i~~~----i~~~i~~~~p~aiviv~tN  164 (289)
                      .+.|++|.+||....  +  ..+   ..+.+..|+.....    +.+.+++. ..+.|+++|.
T Consensus        90 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~g~iv~isS  151 (260)
T 2zat_A           90 GGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKR-GGGSVLIVSS  151 (260)
T ss_dssp             SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEEec
Confidence            389999999997431  1  111   22345666655544    44444443 3456666654

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=97.72  E-value=0.00014  Score=64.46  Aligned_cols=112  Identities=15%  Similarity=0.137  Sum_probs=65.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchh-----HHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-----VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g-----~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIi  120 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++..+     ...|+.+...   +...  -....+.+...|++|.
T Consensus         8 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~Dl~~~~~---v~~~--~~~~~~~~g~iD~lv~   80 (264)
T 2dtx_A            8 DKVVIVTGASMGIGRAIAERFVDEGS--KVIDLSIHDPGEAKYDHIECDVTNPDQ---VKAS--IDHIFKEYGSISVLVN   80 (264)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESSCCCSCSSEEEECCTTCHHH---HHHH--HHHHHHHHSCCCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEecCcccCCceEEEEecCCCHHH---HHHH--HHHHHHHcCCCCEEEE
Confidence            35899999999999999999999997  899999876321     1112221110   0000  0011122347999999


Q ss_pred             cCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 022947          121 PAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (289)
Q Consensus       121 tag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tN  164 (289)
                      +||.....   ..+   ....+..|+.....+.+.+.++   ...+.|+++|.
T Consensus        81 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS  133 (264)
T 2dtx_A           81 NAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISS  133 (264)
T ss_dssp             CCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECC
Confidence            99975321   111   2345666766655555444433   23466766664

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.71  E-value=0.00014  Score=69.31  Aligned_cols=140  Identities=18%  Similarity=0.222  Sum_probs=85.9

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCC---HHhh-hCCCCEEE
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ---LEDA-LTGMDIVI  119 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d---~~ea-l~~aDiVI  119 (289)
                      +..++|.|+|. |.+|+.++..|...|+  +++++|.++..  +..+..... .-+.+  +.++   ++++ +.+||+||
T Consensus         2 ~~~~~viIiG~-Gr~G~~va~~L~~~g~--~vvvId~d~~~--v~~~~~~g~-~vi~G--Dat~~~~L~~agi~~A~~vi   73 (413)
T 3l9w_A            2 SHGMRVIIAGF-GRFGQITGRLLLSSGV--KMVVLDHDPDH--IETLRKFGM-KVFYG--DATRMDLLESAGAAKAEVLI   73 (413)
T ss_dssp             --CCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCHHH--HHHHHHTTC-CCEES--CTTCHHHHHHTTTTTCSEEE
T ss_pred             CCCCeEEEECC-CHHHHHHHHHHHHCCC--CEEEEECCHHH--HHHHHhCCC-eEEEc--CCCCHHHHHhcCCCccCEEE
Confidence            34578999998 9999999999999998  89999998621  111222111 11111  1122   3233 68999999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC-CCcccHHHHHHHHHHhCCCCCCcEEEeeeccHHH
Q 022947          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN-PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVR  198 (289)
Q Consensus       120 itag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN-Pvd~~t~~~~~~~~~~~~~~~~kviG~t~lds~R  198 (289)
                      ++.+               +-..-..++..+++.+|+..|++-++ +.+.      +.+++. |  -+.|+--+..-+.+
T Consensus        74 v~~~---------------~~~~n~~i~~~ar~~~p~~~Iiara~~~~~~------~~L~~~-G--ad~Vi~~~~~~a~~  129 (413)
T 3l9w_A           74 NAID---------------DPQTNLQLTEMVKEHFPHLQIIARARDVDHY------IRLRQA-G--VEKPERETFEGALK  129 (413)
T ss_dssp             ECCS---------------SHHHHHHHHHHHHHHCTTCEEEEEESSHHHH------HHHHHT-T--CSSCEETTHHHHHH
T ss_pred             ECCC---------------ChHHHHHHHHHHHHhCCCCeEEEEECCHHHH------HHHHHC-C--CCEEECccHHHHHH
Confidence            9853               12333446666777889876666554 4322      233432 3  35676655555566


Q ss_pred             HHHHHHHHcCCCCccee
Q 022947          199 ANTFVAEVLGLDPREVD  215 (289)
Q Consensus       199 ~~~~lA~~l~v~~~~V~  215 (289)
                      +-..+-..+|+++..++
T Consensus       130 la~~~L~~lg~~~~~~~  146 (413)
T 3l9w_A          130 TGRLALESLGLGPYEAR  146 (413)
T ss_dssp             HHHHHHHHTTCCHHHHH
T ss_pred             HHHHHHHHcCCCHHHHH
Confidence            66666677888887764

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=97.71  E-value=0.0002  Score=61.63  Aligned_cols=152  Identities=17%  Similarity=0.123  Sum_probs=81.4

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEE--EecCCCHHhhhCCC----CEE
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRG--FLGQQQLEDALTGM----DIV  118 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~--~~~t~d~~eal~~a----DiV  118 (289)
                      ++|.|+||+|.+|..++..|+..|.  +|++.|+++.  .....++..   ......  .+...+.++.++..    |++
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~~~d~l   76 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGK--ATYLTGRSESKLSTVTNCLSN---NVGYRARDLASHQEVEQLFEQLDSIPSTV   76 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCHHHHHHHHHTCSS---CCCEEECCTTCHHHHHHHHHSCSSCCSEE
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhh---ccCeEeecCCCHHHHHHHHHHHhhcCCEE
Confidence            4699999999999999999999997  8999998762  111222211   111111  11111233334333    899


Q ss_pred             EEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHhC-C-CcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEE
Q 022947          119 IIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCC-P-KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (289)
Q Consensus       119 Iitag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~~-p-~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG  190 (289)
                      |.+||......   .+   -...+..|+.....+.+.+.+.- . ...+++++.....            .+.+..-.++
T Consensus        77 v~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~------------~~~~~~~~Y~  144 (230)
T 3guy_A           77 VHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQ------------QPKAQESTYC  144 (230)
T ss_dssp             EECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGT------------SCCTTCHHHH
T ss_pred             EEeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccC------------CCCCCCchhH
Confidence            99998753221   11   23356677766666666555432 1 2355555543211            1223222333


Q ss_pred             eeeccHHHHHHHHHHHcCCCCcceeee
Q 022947          191 VTMLDVVRANTFVAEVLGLDPREVDVP  217 (289)
Q Consensus       191 ~t~lds~R~~~~lA~~l~v~~~~V~~~  217 (289)
                      .+..-...+-+.++++++  +..|++.
T Consensus       145 asKaa~~~~~~~la~e~~--~~gi~v~  169 (230)
T 3guy_A          145 AVKWAVKGLIESVRLELK--GKPMKII  169 (230)
T ss_dssp             HHHHHHHHHHHHHHHHTT--TSSCEEE
T ss_pred             HHHHHHHHHHHHHHHHHH--hcCeEEE
Confidence            333333456677788874  3344433

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=97.71  E-value=0.00011  Score=64.41  Aligned_cols=112  Identities=13%  Similarity=0.071  Sum_probs=64.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--hHHhhhhcccCCceEEEEe-cCC---CHHhhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFL-GQQ---QLEDAL-------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g~~~DL~~~~~~~~v~~~~-~t~---d~~eal-------  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++..  ....++..     .+..+. +-+   +.++.+       
T Consensus         7 ~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~   79 (257)
T 3tpc_A            7 SRVFIVTGASSGLGAAVTRMLAQEGA--TVLGLDLKPPAGEEPAAELGA-----AVRFRNADVTNEADATAALAFAKQEF   79 (257)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSCC-----------------CEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHhCC-----ceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999997  89999988621  11122211     111110 111   222233       


Q ss_pred             CCCCEEEEcCCCCCCCC-------Cc---hhhHHHhhHHHHHHHHHHHHHh---------CCCcEEEEecC
Q 022947          113 TGMDIVIIPAGVPRKPG-------MT---RDDLFNINAGIVKTLCEGIAKC---------CPKAIVNLISN  164 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g-------~~---r~d~~~~N~~i~~~i~~~i~~~---------~p~aiviv~tN  164 (289)
                      ...|++|.+||......       .+   -.+.+..|+.....+.+.+.++         ...+.|+++|.
T Consensus        80 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS  150 (257)
T 3tpc_A           80 GHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTAS  150 (257)
T ss_dssp             SCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEec
Confidence            38999999999753221       11   2234566765555554444433         23566777664

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=97.71  E-value=0.00029  Score=62.27  Aligned_cols=115  Identities=15%  Similarity=0.191  Sum_probs=68.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch-hHH-hhhhcccCCceEEEEe-cCC---CHHhhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVT-ADISHMDTNAVVRGFL-GQQ---QLEDAL-------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~-g~~-~DL~~~~~~~~v~~~~-~t~---d~~eal-------  112 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|++... ... ..+....  .++..+. +-.   ++++.+       
T Consensus        34 ~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~  109 (279)
T 3ctm_A           34 GKVASVTGSSGGIGWAVAEAYAQAGA--DVAIWYNSHPADEKAEHLQKTYG--VHSKAYKCNISDPKSVEETISQQEKDF  109 (279)
T ss_dssp             TCEEEETTTTSSHHHHHHHHHHHHTC--EEEEEESSSCCHHHHHHHHHHHC--SCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcceEEEeecCCHHHHHHHHHHHHHHh
Confidence            45899999999999999999999887  89999987621 111 1121111  1222211 111   222333       


Q ss_pred             CCCCEEEEcCCCCCC--C---CCc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecCC
Q 022947          113 TGMDIVIIPAGVPRK--P---GMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       113 ~~aDiVIitag~~~~--~---g~~---r~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~tNP  165 (289)
                      ...|+||++||....  +   ..+   ....+..|+..    .+.+.+.+++.. .+.|+++|..
T Consensus       110 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~~iv~isS~  173 (279)
T 3ctm_A          110 GTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNG-KGSLIITSSI  173 (279)
T ss_dssp             SCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCC
T ss_pred             CCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCeEEEECch
Confidence            358999999986532  1   111   12345566665    567777776654 3455555543

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.71  E-value=0.00021  Score=62.72  Aligned_cols=113  Identities=17%  Similarity=0.185  Sum_probs=66.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHH-hhhhcccCCceEEE-EecCCCHHhh-------hCCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT-ADISHMDTNAVVRG-FLGQQQLEDA-------LTGMD  116 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~-~DL~~~~~~~~v~~-~~~t~d~~ea-------l~~aD  116 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++..... .++.    ...+.. .+...++++.       +...|
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~----~~~~~~D~~~~~~~~~~~~~~~~~~g~iD   79 (256)
T 2d1y_A            6 GKGVLVTGGARGIGRAIAQAFAREGA--LVALCDLRPEGKEVAEAIG----GAFFQVDLEDERERVRFVEEAAYALGRVD   79 (256)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTHHHHHHHHT----CEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChhHHHHHHHhh----CCEEEeeCCCHHHHHHHHHHHHHHcCCCC
Confidence            45899999999999999999999997  89999987632111 1221    000000 0001112222       34789


Q ss_pred             EEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 022947          117 IVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (289)
Q Consensus       117 iVIitag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tN  164 (289)
                      ++|.+||.....   ..+   ..+.+..|+.....+.+.+..+   ...+.|+++|.
T Consensus        80 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS  136 (256)
T 2d1y_A           80 VLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVAS  136 (256)
T ss_dssp             EEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence            999999975321   111   2345667766555555544332   23466776654

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=97.71  E-value=1.9e-05  Score=69.43  Aligned_cols=111  Identities=14%  Similarity=0.117  Sum_probs=66.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhh-------h
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------L  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------l  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++.     .++..+. +-+|   +++.       +
T Consensus         6 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~~   78 (253)
T 1hxh_A            6 GKVALVTGGASGVGLEVVKLLLGEGA--KVAFSDINEAAGQQLAAELG-----ERSMFVRHDVSSEADWTLVMAAVQRRL   78 (253)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHC-----TTEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcC-----CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999997  8999998752  11112221     1112111 1112   2222       2


Q ss_pred             CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecCC
Q 022947          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       113 ~~aDiVIitag~~~~~---g~~---r~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tNP  165 (289)
                      ...|++|.+||.....   ..+   ....+..|+.    ..+.+.+.+++..  +.|+++|..
T Consensus        79 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--g~iv~isS~  139 (253)
T 1hxh_A           79 GTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG--GSIINMASV  139 (253)
T ss_dssp             CSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC--EEEEEECCG
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC--CEEEEEcch
Confidence            3579999999975321   112   2334566654    4455555665443  677776643

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=97.71  E-value=0.00027  Score=63.00  Aligned_cols=113  Identities=16%  Similarity=0.160  Sum_probs=66.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCC---CHHhhhC-------
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQ---QLEDALT-------  113 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~---d~~eal~-------  113 (289)
                      +++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++...   ..+..+. +-+   +.++.++       
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   96 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGW--SLVLTGRREERLQALAGELSAK---TRVLPLTLDVRDRAAMSAAVDNLPEEFA   96 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTT---SCEEEEECCTTCHHHHHHHHHTCCGGGS
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhcC---CcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            4799999999999999999999997  8999998762  1122222211   1222211 111   2333333       


Q ss_pred             CCCEEEEcCCCCCC--C--CCc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 022947          114 GMDIVIIPAGVPRK--P--GMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       114 ~aDiVIitag~~~~--~--g~~---r~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      ..|++|.+||....  +  ..+   -...+..|+..    .+.+.+.+.+......|+++|.
T Consensus        97 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS  158 (272)
T 2nwq_A           97 TLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGS  158 (272)
T ss_dssp             SCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECC
T ss_pred             CCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            45999999997532  1  111   12345566554    4555666655543316666654

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.70  E-value=0.00014  Score=57.91  Aligned_cols=70  Identities=13%  Similarity=0.116  Sum_probs=45.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCC---HHh-hhCCCCEEEEc
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ---LED-ALTGMDIVIIP  121 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d---~~e-al~~aDiVIit  121 (289)
                      +++|.|+|+ |.+|+.++..|...|+  +|+++|.++..  ..++....  ..+.. ...++   +.+ .+.++|+||++
T Consensus         6 ~~~v~I~G~-G~iG~~la~~L~~~g~--~V~~id~~~~~--~~~~~~~~--~~~~~-gd~~~~~~l~~~~~~~~d~vi~~   77 (141)
T 3llv_A            6 RYEYIVIGS-EAAGVGLVRELTAAGK--KVLAVDKSKEK--IELLEDEG--FDAVI-ADPTDESFYRSLDLEGVSAVLIT   77 (141)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEESCHHH--HHHHHHTT--CEEEE-CCTTCHHHHHHSCCTTCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEECCHHH--HHHHHHCC--CcEEE-CCCCCHHHHHhCCcccCCEEEEe
Confidence            468999998 9999999999999998  99999997621  11222211  11111 11122   211 14789999998


Q ss_pred             CC
Q 022947          122 AG  123 (289)
Q Consensus       122 ag  123 (289)
                      .+
T Consensus        78 ~~   79 (141)
T 3llv_A           78 GS   79 (141)
T ss_dssp             CS
T ss_pred             cC
Confidence            64

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=97.70  E-value=4.5e-05  Score=68.12  Aligned_cols=77  Identities=18%  Similarity=0.148  Sum_probs=50.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch----hHHhhhhcccCCceEEEEe----cCCCHHhhhCCCCE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP----GVTADISHMDTNAVVRGFL----GQQQLEDALTGMDI  117 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~----g~~~DL~~~~~~~~v~~~~----~t~d~~eal~~aDi  117 (289)
                      ++||.|+||+|++|++++..|+..|+  +|++++++...    .....+.... ...+..+.    ...++.++++++|+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~~~~~~l~-~~~v~~v~~D~~d~~~l~~~~~~~d~   80 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGH--PTFLLVRESTASSNSEKAQLLESFK-ASGANIVHGSIDDHASLVEAVKNVDV   80 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCCCCTTTTHHHHHHHHHHH-TTTCEEECCCTTCHHHHHHHHHTCSE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC--CEEEEECCcccccCHHHHHHHHHHH-hCCCEEEEeccCCHHHHHHHHcCCCE
Confidence            56899999999999999999999986  88999887521    1111111100 01112111    11246678899999


Q ss_pred             EEEcCCCC
Q 022947          118 VIIPAGVP  125 (289)
Q Consensus       118 VIitag~~  125 (289)
                      ||++++..
T Consensus        81 vi~~a~~~   88 (308)
T 1qyc_A           81 VISTVGSL   88 (308)
T ss_dssp             EEECCCGG
T ss_pred             EEECCcch
Confidence            99998753

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=97.70  E-value=0.00047  Score=60.88  Aligned_cols=157  Identities=15%  Similarity=0.160  Sum_probs=87.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HH---hhhCCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LE---DALTGMD  116 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~---eal~~aD  116 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+++.  .....++........+..+. +.++   .+   +.+...|
T Consensus        10 ~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id   87 (267)
T 3t4x_A           10 GKTALVTGSTAGIGKAIATSLVAEGA--NVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVD   87 (267)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCC
Confidence            35899999999999999999999997  8999998762  22223333221112222221 1122   11   2234899


Q ss_pred             EEEEcCCCCCCCC---Cc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCC
Q 022947          117 IVIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK  186 (289)
Q Consensus       117 iVIitag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~  186 (289)
                      ++|.+||......   .+   ..+.+..|+..    .+.+.+.+.+. ..+.|+++|......            +.+..
T Consensus        88 ~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~------------~~~~~  154 (267)
T 3t4x_A           88 ILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIER-KEGRVIFIASEAAIM------------PSQEM  154 (267)
T ss_dssp             EEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TEEEEEEECCGGGTS------------CCTTC
T ss_pred             EEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCEEEEEcchhhcc------------CCCcc
Confidence            9999999753321   11   22346667665    45555555543 456677666433211            22222


Q ss_pred             cEEEeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          187 RLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       187 kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                      -.++.+..-...+-+.+|.+++  +..|++.++
T Consensus       155 ~~Y~asKaa~~~l~~~la~e~~--~~gi~vn~v  185 (267)
T 3t4x_A          155 AHYSATKTMQLSLSRSLAELTT--GTNVTVNTI  185 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT--TSEEEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHHhC--CCCeEEEEE
Confidence            2223332223345666777764  455655444

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=97.70  E-value=0.00012  Score=64.48  Aligned_cols=114  Identities=20%  Similarity=0.225  Sum_probs=67.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhH-----HhhhhcccCCceEEEEecCCCHHhhhCCCCEEEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-----TADISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~-----~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIi  120 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|+++....     ..|+.+...   +...  -....+.+...|++|.
T Consensus        21 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~Dl~d~~~---v~~~--~~~~~~~~g~iD~lv~   93 (253)
T 2nm0_A           21 SRSVLVTGGNRGIGLAIARAFADAGD--KVAITYRSGEPPEGFLAVKCDITDTEQ---VEQA--YKEIEETHGPVEVLIA   93 (253)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSCCCTTSEEEECCTTSHHH---HHHH--HHHHHHHTCSCSEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHhhccceEEEecCCCHHH---HHHH--HHHHHHHcCCCCEEEE
Confidence            35899999999999999999999997  8999998752111     112221110   0000  0011222346799999


Q ss_pred             cCCCCCCC------CCchhhHHHhhHHHHHHHHH----HHHHhCCCcEEEEecCCCc
Q 022947          121 PAGVPRKP------GMTRDDLFNINAGIVKTLCE----GIAKCCPKAIVNLISNPVN  167 (289)
Q Consensus       121 tag~~~~~------g~~r~d~~~~N~~i~~~i~~----~i~~~~p~aiviv~tNPvd  167 (289)
                      +||.....      .++..+.+..|+.....+.+    .+++. ..+.|+++|.-..
T Consensus        94 nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~~  149 (253)
T 2nm0_A           94 NAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRA-KKGRVVLISSVVG  149 (253)
T ss_dssp             ECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHH-TCEEEEEECCCCC
T ss_pred             CCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEECchhh
Confidence            99975321      12234456677665544444    44433 3566777765543

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=97.70  E-value=0.00014  Score=65.79  Aligned_cols=77  Identities=16%  Similarity=0.270  Sum_probs=56.7

Q ss_pred             CCEEEEEc-CCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           46 GFKVAVLG-AAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        46 ~~KI~IIG-aaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      ++||+||| + |.+|..++..|...|+  +|.++|+++..                      +..+++++||+||++...
T Consensus        21 ~~~I~iIGg~-G~mG~~la~~l~~~G~--~V~~~~~~~~~----------------------~~~~~~~~aDvVilavp~   75 (298)
T 2pv7_A           21 IHKIVIVGGY-GKLGGLFARYLRASGY--PISILDREDWA----------------------VAESILANADVVIVSVPI   75 (298)
T ss_dssp             CCCEEEETTT-SHHHHHHHHHHHTTTC--CEEEECTTCGG----------------------GHHHHHTTCSEEEECSCG
T ss_pred             CCEEEEEcCC-CHHHHHHHHHHHhCCC--eEEEEECCccc----------------------CHHHHhcCCCEEEEeCCH
Confidence            35899999 7 9999999999999997  89999876420                      245788999999998631


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEec
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS  163 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~t  163 (289)
                      .                .+.++++.+..+. |+++|+.++
T Consensus        76 ~----------------~~~~vl~~l~~~l~~~~iv~~~~   99 (298)
T 2pv7_A           76 N----------------LTLETIERLKPYLTENMLLADLT   99 (298)
T ss_dssp             G----------------GHHHHHHHHGGGCCTTSEEEECC
T ss_pred             H----------------HHHHHHHHHHhhcCCCcEEEECC
Confidence            1                1455666666654 677665543

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=97.69  E-value=0.0004  Score=61.87  Aligned_cols=114  Identities=17%  Similarity=0.168  Sum_probs=67.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal-------  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++...   .++..+. +-+|   +++.+       
T Consensus        29 ~k~vlVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~~  103 (276)
T 2b4q_A           29 GRIALVTGGSRGIGQMIAQGLLEAGA--RVFICARDAEACADTATRLSAY---GDCQAIPADLSSEAGARRLAQALGELS  103 (276)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHTTS---SCEEECCCCTTSHHHHHHHHHHHHHHC
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc---CceEEEEeeCCCHHHHHHHHHHHHHhc
Confidence            45899999999999999999999997  8999998762  2122223211   1222211 1112   22222       


Q ss_pred             CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHH----HHHHHHHHHhCC---CcEEEEecC
Q 022947          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIV----KTLCEGIAKCCP---KAIVNLISN  164 (289)
Q Consensus       113 ~~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~----~~i~~~i~~~~p---~aiviv~tN  164 (289)
                      ...|++|.+||.....   ..+   ....+..|+...    +.+.+.+++...   .+.|+++|.
T Consensus       104 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS  168 (276)
T 2b4q_A          104 ARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGS  168 (276)
T ss_dssp             SCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECC
Confidence            3799999999965321   111   234556665544    555555555442   166777664

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=97.69  E-value=9.1e-05  Score=67.20  Aligned_cols=66  Identities=12%  Similarity=0.101  Sum_probs=48.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      ++||+|||+ |.+|..++..|...|+  +|.++|+++....  ++....    +..   ..+++++++++|+||++..
T Consensus        30 ~~~I~iIG~-G~mG~~~a~~l~~~g~--~V~~~~~~~~~~~--~~~~~g----~~~---~~~~~~~~~~~DvVi~av~   95 (316)
T 2uyy_A           30 DKKIGFLGL-GLMGSGIVSNLLKMGH--TVTVWNRTAEKCD--LFIQEG----ARL---GRTPAEVVSTCDITFACVS   95 (316)
T ss_dssp             SSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSGGGGH--HHHHTT----CEE---CSCHHHHHHHCSEEEECCS
T ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCC--EEEEEeCCHHHHH--HHHHcC----CEE---cCCHHHHHhcCCEEEEeCC
Confidence            479999998 9999999999998887  8999998763211  122211    111   2356788899999999863

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=97.69  E-value=0.0003  Score=63.35  Aligned_cols=116  Identities=17%  Similarity=0.199  Sum_probs=68.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--------------hhHHhhhhcccCCceEEEEe-cCCC---
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--------------PGVTADISHMDTNAVVRGFL-GQQQ---  107 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--------------~g~~~DL~~~~~~~~v~~~~-~t~d---  107 (289)
                      .+++.|+||+|.+|..++..|+..|.  .|+++|+++.              .....++...  ..++..+. +-+|   
T Consensus        28 gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~  103 (299)
T 3t7c_A           28 GKVAFITGAARGQGRSHAITLAREGA--DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEAL--GRRIIASQVDVRDFDA  103 (299)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecccccccccccccCHHHHHHHHHHHHhc--CCceEEEECCCCCHHH
Confidence            45899999999999999999999998  8999998720              1111222221  12222211 1112   


Q ss_pred             HHhh-------hCCCCEEEEcCCCCCCCC----Cc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecCC
Q 022947          108 LEDA-------LTGMDIVIIPAGVPRKPG----MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       108 ~~ea-------l~~aDiVIitag~~~~~g----~~---r~d~~~~N~~i~----~~i~~~i~~~~p~aiviv~tNP  165 (289)
                      .++.       +...|++|.+||......    .+   -...+..|+...    +.+.+.+.+....+.|+++|..
T Consensus       104 v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~  179 (299)
T 3t7c_A          104 MQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSI  179 (299)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCG
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECCh
Confidence            2222       247999999998653221    12   133556665544    4444555554556777777653

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=97.69  E-value=0.00012  Score=63.65  Aligned_cols=112  Identities=13%  Similarity=0.071  Sum_probs=65.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhh-------h
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------L  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------l  112 (289)
                      ++++.|+||+|.+|..++..|+..|.  +|++.|+++.  +....++..     .+..+. +-+|   .++.       +
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~~   75 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGH--QVSMMGRRYQRLQQQELLLGN-----AVIGIVADLAHHEDVDVAFAAAVEWG   75 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG-----GEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcC-----CceEEECCCCCHHHHHHHHHHHHHhc
Confidence            45799999999999999999999997  8999999762  212222211     122111 1112   2222       2


Q ss_pred             CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHhC--CCcEEEEecC
Q 022947          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCC--PKAIVNLISN  164 (289)
Q Consensus       113 ~~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~~--p~aiviv~tN  164 (289)
                      ...|++|.+||.....   ..+   -...+..|+.....+++.+...-  ..+.|+++|.
T Consensus        76 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS  135 (235)
T 3l6e_A           76 GLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLS  135 (235)
T ss_dssp             CSCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred             CCCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence            3679999999974321   112   23456677776655555544331  2346666554

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=97.69  E-value=0.00049  Score=60.04  Aligned_cols=116  Identities=20%  Similarity=0.217  Sum_probs=69.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccE-EEEEeCCCchhHHhhhhcccCCceEEEEe-cCCC----HHhhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSV-LHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQ----LEDAL-------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~e-I~LvD~~~~~g~~~DL~~~~~~~~v~~~~-~t~d----~~eal-------  112 (289)
                      .++|.|+||+|.+|..++..|+..|.  + |+++|+++......++........+..+. +-+|    .++.+       
T Consensus         5 ~k~vlVtGas~gIG~~~a~~l~~~G~--~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (254)
T 1sby_A            5 NKNVIFVAALGGIGLDTSRELVKRNL--KNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL   82 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTCC--SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC--cEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHhc
Confidence            45899999999999999999999996  5 89999876322222332211112232221 1111    22222       


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh----C--CCcEEEEecCC
Q 022947          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC----C--PKAIVNLISNP  165 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~----~--p~aiviv~tNP  165 (289)
                      .+.|++|.+||...  .+...+.+..|+.....+.+.+.+.    .  +.+.|+++|..
T Consensus        83 g~id~lv~~Ag~~~--~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~  139 (254)
T 1sby_A           83 KTVDILINGAGILD--DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSV  139 (254)
T ss_dssp             SCCCEEEECCCCCC--TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCG
T ss_pred             CCCCEEEECCccCC--HHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECch
Confidence            37999999999742  2234456677776655555554432    1  24667776643

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=97.69  E-value=0.00011  Score=64.40  Aligned_cols=112  Identities=15%  Similarity=0.144  Sum_probs=67.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--hHHhhhhcccCCceEEEEe-cC---CCHHhhhC------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFL-GQ---QQLEDALT------  113 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g~~~DL~~~~~~~~v~~~~-~t---~d~~eal~------  113 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|++...  ....++.     .++..+. +-   .++++.++      
T Consensus        12 ~k~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (265)
T 2o23_A           12 GLVAVITGGASGLGLATAERLVGQGA--SAVLLDLPNSGGEAQAKKLG-----NNCVFAPADVTSEKDVQTALALAKGKF   84 (265)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSSHHHHHHHHC-----TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcHhHHHHHHHhC-----CceEEEEcCCCCHHHHHHHHHHHHHHC
Confidence            45899999999999999999999997  89999998622  1122221     1122111 11   12333333      


Q ss_pred             -CCCEEEEcCCCCCCCC---------Cc---hhhHHHhhHHHHHHHHHHHHHh----C-----CCcEEEEecC
Q 022947          114 -GMDIVIIPAGVPRKPG---------MT---RDDLFNINAGIVKTLCEGIAKC----C-----PKAIVNLISN  164 (289)
Q Consensus       114 -~aDiVIitag~~~~~g---------~~---r~d~~~~N~~i~~~i~~~i~~~----~-----p~aiviv~tN  164 (289)
                       ..|++|.+||......         .+   ..+.+..|+.....+.+.+.++    .     ..+.|+++|.
T Consensus        85 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS  157 (265)
T 2o23_A           85 GRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTAS  157 (265)
T ss_dssp             SCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECC
T ss_pred             CCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCC
Confidence             8999999998753211         11   2335566766555555555443    1     3456666654

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=97.69  E-value=3.9e-05  Score=68.22  Aligned_cols=113  Identities=20%  Similarity=0.254  Sum_probs=66.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhH-----HhhhhcccCCceEEEEecCCCHHhhhCCCCEEEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-----TADISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~-----~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIi  120 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|++.....     ..|+.+..   .+...  .....+.+...|++|.
T Consensus        28 gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~Dv~~~~---~~~~~--~~~~~~~~g~iD~lvn  100 (266)
T 3uxy_A           28 GKVALVTGAAGGIGGAVVTALRAAGA--RVAVADRAVAGIAADLHLPGDLREAA---YADGL--PGAVAAGLGRLDIVVN  100 (266)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEECSSCCTTSCCSEECCCCTTSHH---HHHHH--HHHHHHHHSCCCEEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHhhhccCcCCCCHH---HHHHH--HHHHHHhcCCCCEEEE
Confidence            45899999999999999999999997  8999998762111     11222111   00000  0012233468999999


Q ss_pred             cCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHH----HHHhCCCcEEEEecCCC
Q 022947          121 PAGVPRKPG---MT---RDDLFNINAGIVKTLCEG----IAKCCPKAIVNLISNPV  166 (289)
Q Consensus       121 tag~~~~~g---~~---r~d~~~~N~~i~~~i~~~----i~~~~p~aiviv~tNPv  166 (289)
                      +||......   .+   -...+..|+.....+++.    +++. ..+.|+++|...
T Consensus       101 nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~  155 (266)
T 3uxy_A          101 NAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAA-GGGAIVNVASCW  155 (266)
T ss_dssp             CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCSB
T ss_pred             CCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEECCHH
Confidence            999754211   11   223455666544444444    4544 356677666543

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=97.68  E-value=0.00043  Score=61.23  Aligned_cols=117  Identities=20%  Similarity=0.250  Sum_probs=69.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh------
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL------  112 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal------  112 (289)
                      +.++|.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++....  .++..+. +-.|   +++.+      
T Consensus        30 ~~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~  105 (272)
T 1yb1_A           30 TGEIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAE  105 (272)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEEcCHHHHHHHHHHHHhcC--CeEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            356899999999999999999999997  8999998762  11122232211  1222221 1112   22222      


Q ss_pred             -CCCCEEEEcCCCCCCCCC------chhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecCCC
Q 022947          113 -TGMDIVIIPAGVPRKPGM------TRDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPV  166 (289)
Q Consensus       113 -~~aDiVIitag~~~~~g~------~r~d~~~~N~~i~----~~i~~~i~~~~p~aiviv~tNPv  166 (289)
                       .+.|+||.+||.......      ...+.+..|+...    +.+.+.+.+. ..+.|+++|...
T Consensus       106 ~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~~iv~isS~~  169 (272)
T 1yb1_A          106 IGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKN-NHGHIVTVASAA  169 (272)
T ss_dssp             TCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCCC
T ss_pred             CCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCEEEEEechh
Confidence             378999999997532211      1123556676654    4444444433 356677766554

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=97.68  E-value=6.5e-05  Score=65.33  Aligned_cols=153  Identities=17%  Similarity=0.188  Sum_probs=83.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal-------  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++....  .++..+. +-+|   .++.+       
T Consensus         5 ~k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (247)
T 3lyl_A            5 EKVALVTGASRGIGFEVAHALASKGA--TVVGTATSQASAEKFENSMKEKG--FKARGLVLNISDIESIQNFFAEIKAEN   80 (247)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999997  8999998762  22222232221  1222211 1112   22222       


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHH----HHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCC
Q 022947          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCE----GIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g---~~---r~d~~~~N~~i~~~i~~----~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~  182 (289)
                      ...|++|.+||......   .+   -...+..|+.....+.+    .+.+. +.+.|+++|.....            .+
T Consensus        81 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g~iv~isS~~~~------------~~  147 (247)
T 3lyl_A           81 LAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKK-RWGRIISIGSVVGS------------AG  147 (247)
T ss_dssp             CCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCTHHH------------HC
T ss_pred             CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCeEEEEEcchhhc------------cC
Confidence            35799999999753321   11   23345666555444444    44433 34667776643211            12


Q ss_pred             CCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeee
Q 022947          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVP  217 (289)
Q Consensus       183 ~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~  217 (289)
                      .|....++.+..-...+-+.++++++  +..|++.
T Consensus       148 ~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~  180 (247)
T 3lyl_A          148 NPGQTNYCAAKAGVIGFSKSLAYEVA--SRNITVN  180 (247)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEE
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHH--HcCeEEE
Confidence            33333344433323345566777763  3345443

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=97.68  E-value=3.8e-05  Score=69.36  Aligned_cols=110  Identities=12%  Similarity=0.144  Sum_probs=70.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhh-CCCCEEEEcCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL-TGMDIVIIPAGV  124 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal-~~aDiVIitag~  124 (289)
                      +|||+|||+ |.+|+.++..|...|.  +|.++|+++..   .++.............   +..+++ .++|+||++.- 
T Consensus         2 ~mkI~iiGa-Ga~G~~~a~~L~~~g~--~V~~~~r~~~~---~~~~~~~g~~~~~~~~---~~~~~~~~~~D~vilavk-   71 (294)
T 3g17_A            2 SLSVAIIGP-GAVGTTIAYELQQSLP--HTTLIGRHAKT---ITYYTVPHAPAQDIVV---KGYEDVTNTFDVIIIAVK-   71 (294)
T ss_dssp             -CCEEEECC-SHHHHHHHHHHHHHCT--TCEEEESSCEE---EEEESSTTSCCEEEEE---EEGGGCCSCEEEEEECSC-
T ss_pred             CcEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeccCc---EEEEecCCeeccceec---CchHhcCCCCCEEEEeCC-
Confidence            479999998 9999999999998886  89999987511   1111111011111111   223555 89999999852 


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~  191 (289)
                         +.            .+.++++.++.+- |+..|+.+.|-++...           .+|.+++++-
T Consensus        72 ---~~------------~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~-----------~~~~~~v~~g  113 (294)
T 3g17_A           72 ---TH------------QLDAVIPHLTYLAHEDTLIILAQNGYGQLE-----------HIPFKNVCQA  113 (294)
T ss_dssp             ---GG------------GHHHHGGGHHHHEEEEEEEEECCSSCCCGG-----------GCCCSCEEEC
T ss_pred             ---cc------------CHHHHHHHHHHhhCCCCEEEEeccCcccHh-----------hCCCCcEEEE
Confidence               11            1334555555553 6788888999998753           1778888753

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=97.68  E-value=0.00018  Score=63.33  Aligned_cols=114  Identities=23%  Similarity=0.309  Sum_probs=65.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--hHHhhhhcccCCce-EEE-EecCCCHHhhhC-------C
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAV-VRG-FLGQQQLEDALT-------G  114 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g~~~DL~~~~~~~~-v~~-~~~t~d~~eal~-------~  114 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++..  ....++..   ... +.. .+...+++++++       +
T Consensus        12 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~D~~d~~~v~~~~~~~~~~~g~   86 (263)
T 3ak4_A           12 GRKAIVTGGSKGIGAAIARALDKAGA--TVAIADLDVMAAQAVVAGLEN---GGFAVEVDVTKRASVDAAMQKAIDALGG   86 (263)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCTT---CCEEEECCTTCHHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhc---CCeEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence            45899999999999999999999997  89999987521  11122211   011 110 111112333333       8


Q ss_pred             CCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHH----HHHHHHHhCCCcEEEEecC
Q 022947          115 MDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKT----LCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       115 aDiVIitag~~~~~g---~~---r~d~~~~N~~i~~~----i~~~i~~~~p~aiviv~tN  164 (289)
                      .|++|.+||......   .+   ....+..|+.....    ..+.+.+....+.|++++.
T Consensus        87 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS  146 (263)
T 3ak4_A           87 FDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTAS  146 (263)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             CCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecc
Confidence            999999999753211   11   22345566554444    4444444332466666654

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=97.68  E-value=0.00022  Score=69.28  Aligned_cols=99  Identities=17%  Similarity=0.198  Sum_probs=65.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhccc-CCceEEEEecCCCHHhhhC---CCCEEEE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-TNAVVRGFLGQQQLEDALT---GMDIVII  120 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~-~~~~v~~~~~t~d~~eal~---~aDiVIi  120 (289)
                      .+|||+|||. |.+|.+++..|+..|+  +|+++|+++..  +.++.... ....+..   +.++++.++   ++|+||+
T Consensus         3 ~~~kIgiIGl-G~MG~~lA~~L~~~G~--~V~v~dr~~~~--~~~l~~~g~~g~~i~~---~~s~~e~v~~l~~aDvVil   74 (484)
T 4gwg_A            3 AQADIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTVSK--VDDFLANEAKGTKVVG---AQSLKEMVSKLKKPRRIIL   74 (484)
T ss_dssp             CCBSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSTHH--HHHHHHTTTTTSSCEE---CSSHHHHHHTBCSSCEEEE
T ss_pred             CCCEEEEECh-hHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHhcccCCCceec---cCCHHHHHhhccCCCEEEE
Confidence            4579999998 9999999999999998  99999998722  12222211 0112222   245656554   6999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 022947          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPV  166 (289)
Q Consensus       121 tag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPv  166 (289)
                      +...+               +.++++++.+.... |..+|+..+|-.
T Consensus        75 ~Vp~~---------------~~v~~vl~~l~~~L~~g~iIId~st~~  106 (484)
T 4gwg_A           75 LVKAG---------------QAVDDFIEKLVPLLDTGDIIIDGGNSE  106 (484)
T ss_dssp             CSCSS---------------HHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred             ecCCh---------------HHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence            85321               22445556666664 677777777654

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=97.68  E-value=0.00015  Score=68.19  Aligned_cols=95  Identities=16%  Similarity=0.141  Sum_probs=58.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHh-CCCccEEEEEe---CCCchhHHhh-hhccc------CCce--EE--E-E-ecCCCH
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYD---VVNTPGVTAD-ISHMD------TNAV--VR--G-F-LGQQQL  108 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~-~g~~~eI~LvD---~~~~~g~~~D-L~~~~------~~~~--v~--~-~-~~t~d~  108 (289)
                      +|||+|||+ |.+|..++..|+. .|+  +|.++|   +++.  .... +....      ....  +.  . . ..++++
T Consensus         2 ~mkI~ViGa-G~~G~~~a~~La~~~G~--~V~~~~~~~r~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (404)
T 3c7a_A            2 TVKVCVCGG-GNGAHTLSGLAASRDGV--EVRVLTLFADEAE--RWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDP   76 (404)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHTTSTTE--EEEEECCSTTHHH--HHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCH
T ss_pred             CceEEEECC-CHHHHHHHHHHHhCCCC--EEEEEeCCCCcHH--HHHHHHhhccceeeeecCCCccceeeccceEEeCCH
Confidence            479999998 9999999999987 487  999999   4321  1111 11100      0000  11  0 0 124577


Q ss_pred             HhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEE
Q 022947          109 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNL  161 (289)
Q Consensus       109 ~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv  161 (289)
                      +++++++|+||++....                ...++++.+..+. |+.+|+.
T Consensus        77 ~~a~~~aD~Vilav~~~----------------~~~~v~~~l~~~l~~~~ivv~  114 (404)
T 3c7a_A           77 EIAISGADVVILTVPAF----------------AHEGYFQAMAPYVQDSALIVG  114 (404)
T ss_dssp             HHHHTTCSEEEECSCGG----------------GHHHHHHHHTTTCCTTCEEEE
T ss_pred             HHHhCCCCEEEEeCchH----------------HHHHHHHHHHhhCCCCcEEEE
Confidence            78899999999986321                1345666676665 5665544

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=97.66  E-value=0.00054  Score=60.30  Aligned_cols=116  Identities=21%  Similarity=0.154  Sum_probs=70.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--hHHhhhhcccCCceEEEEe-cCCC---HHhhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g~~~DL~~~~~~~~v~~~~-~t~d---~~eal-------  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|++...  ....++........+..+. +-+|   +++++       
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (267)
T 2gdz_A            7 GKVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   84 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999997  89999987521  1122232210011222221 1122   22222       


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhHHHhhHH----HHHHHHHHHHHhC--CCcEEEEecCC
Q 022947          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAG----IVKTLCEGIAKCC--PKAIVNLISNP  165 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g~~r~d~~~~N~~----i~~~i~~~i~~~~--p~aiviv~tNP  165 (289)
                      ...|++|.+||....  ....+.+..|+.    ..+.+.+.+++..  +.+.|+++|..
T Consensus        85 g~id~lv~~Ag~~~~--~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~  141 (267)
T 2gdz_A           85 GRLDILVNNAGVNNE--KNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSL  141 (267)
T ss_dssp             SCCCEEEECCCCCCS--SSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCG
T ss_pred             CCCCEEEECCCCCCh--hhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCc
Confidence            357999999997532  233445666765    5566667666543  25677776653

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=97.66  E-value=0.00018  Score=62.79  Aligned_cols=115  Identities=15%  Similarity=0.162  Sum_probs=66.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeC-CCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhhC-----
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV-VNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDALT-----  113 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~-~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal~-----  113 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+ ++.  .....++...  ...+..+. +-+|   +.+.++     
T Consensus         7 ~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (261)
T 1gee_A            7 GKVVVITGSSTGLGKSMAIRFATEKA--KVVVNYRSKEDEANSVLEEIKKV--GGEAIAVKGDVTVESDVINLVQSAIKE   82 (261)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEcCCChHHHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999999997  8999998 432  1112223221  12222221 1112   222333     


Q ss_pred             --CCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHH----HHHHHHHHhCCCcEEEEecC
Q 022947          114 --GMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVK----TLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       114 --~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~~----~i~~~i~~~~p~aiviv~tN  164 (289)
                        +.|+||++||.....   ..+   -.+.+..|+....    .+.+.+.+..+.+.|+++|.
T Consensus        83 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS  145 (261)
T 1gee_A           83 FGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSS  145 (261)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence              789999999975321   111   1234556655444    44444444443566776664

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=97.66  E-value=0.00025  Score=64.71  Aligned_cols=118  Identities=19%  Similarity=0.126  Sum_probs=68.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal-------  112 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|++..  .....++........+..+. +-+|   +++++       
T Consensus         8 ~k~vlVTGas~gIG~~la~~l~~~G~--~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   85 (319)
T 3ioy_A            8 GRTAFVTGGANGVGIGLVRQLLNQGC--KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF   85 (319)
T ss_dssp             TCEEEEETTTSTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEcCCchHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC
Confidence            35899999999999999999999998  8999999862  22222232211111222221 1112   22233       


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHH----HHHHHHHHHh-----CCCcEEEEecCC
Q 022947          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIV----KTLCEGIAKC-----CPKAIVNLISNP  165 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g---~~---r~d~~~~N~~i~----~~i~~~i~~~-----~p~aiviv~tNP  165 (289)
                      ...|++|.+||......   .+   -.+.+..|+...    +.+.+.+.+.     ...+.|+++|.-
T Consensus        86 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~  153 (319)
T 3ioy_A           86 GPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASM  153 (319)
T ss_dssp             CCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCG
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEeccc
Confidence            36799999999743211   11   233556665544    4444444443     135677776643

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=97.65  E-value=0.00026  Score=62.54  Aligned_cols=111  Identities=20%  Similarity=0.179  Sum_probs=64.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhH-------HhhhhcccCCceEEEEecCCCHHhhhCCCCEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-------TADISHMDTNAVVRGFLGQQQLEDALTGMDIV  118 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~-------~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiV  118 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|++.....       ..|+.+...   +...  .....+.+...|++
T Consensus        28 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~Dv~d~~~---v~~~--~~~~~~~~g~iD~l  100 (260)
T 3un1_A           28 QKVVVITGASQGIGAGLVRAYRDRNY--RVVATSRSIKPSADPDIHTVAGDISKPET---ADRI--VREGIERFGRIDSL  100 (260)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSCCCCSSTTEEEEESCTTSHHH---HHHH--HHHHHHHHSCCCEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChhhcccCceEEEEccCCCHHH---HHHH--HHHHHHHCCCCCEE
Confidence            45899999999999999999999998  9999998762111       112221110   0000  00111223489999


Q ss_pred             EEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHH----HHHHhCCCcEEEEecC
Q 022947          119 IIPAGVPRKPG---MT---RDDLFNINAGIVKTLCE----GIAKCCPKAIVNLISN  164 (289)
Q Consensus       119 Iitag~~~~~g---~~---r~d~~~~N~~i~~~i~~----~i~~~~p~aiviv~tN  164 (289)
                      |.+||......   .+   -.+.+..|+.....+.+    .+.+. ..+.|+++|.
T Consensus       101 v~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~isS  155 (260)
T 3un1_A          101 VNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQ-GSGHIVSITT  155 (260)
T ss_dssp             EECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCcEEEEEec
Confidence            99999753221   11   23345667655544444    44443 3455666554

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=97.65  E-value=0.00061  Score=60.54  Aligned_cols=118  Identities=10%  Similarity=0.019  Sum_probs=69.0

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhh------
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDA------  111 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea------  111 (289)
                      .+.+++.|+||+|.+|..++..|+..|.  +|+++|++..  .....++.... ..++..+. +-+|   .++.      
T Consensus        25 l~~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~  101 (277)
T 4fc7_A           25 LRDKVAFITGGGSGIGFRIAEIFMRHGC--HTVIASRSLPRVLTAARKLAGAT-GRRCLPLSMDVRAPPAVMAAVDQALK  101 (277)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            3456899999999999999999999997  9999999762  22223332211 11222211 1112   2222      


Q ss_pred             -hCCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 022947          112 -LTGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (289)
Q Consensus       112 -l~~aDiVIitag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tN  164 (289)
                       +...|++|.+||......   .+   -...+..|+.....+.+.+...   ...+.|+++|.
T Consensus       102 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS  164 (277)
T 4fc7_A          102 EFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITA  164 (277)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECC
T ss_pred             HcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECc
Confidence             247899999998643211   11   2235666766555555554322   13566777664

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=97.65  E-value=8.7e-05  Score=71.77  Aligned_cols=114  Identities=11%  Similarity=0.089  Sum_probs=69.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhH----H-hhhhcc-------cCCceEEEEecC----CCH
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV----T-ADISHM-------DTNAVVRGFLGQ----QQL  108 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~----~-~DL~~~-------~~~~~v~~~~~t----~d~  108 (289)
                      .+++|.|+||+|++|++++..|...|.  +|+++++......    . ..+...       ....++..+.+.    .++
T Consensus       149 ~~~~VLVTGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l  226 (508)
T 4f6l_B          149 PLGNTLLTGATGFLGAYLIEALQGYSH--RIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDV  226 (508)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHTBTTEE--EEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSC
T ss_pred             CCCeEEEECCccchHHHHHHHHHhcCC--EEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccC
Confidence            467999999999999999998866666  9999998763110    0 111110       011234433211    122


Q ss_pred             HhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          109 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       109 ~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      . ++.++|+||++|+.... ..+..++...|+...+.+++.+.+ ...-++.+.|
T Consensus       227 ~-~~~~~D~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~-~~~~~v~iSS  278 (508)
T 4f6l_B          227 V-LPENMDTIIHAGARTDH-FGDDDEFEKVNVQGTVDVIRLAQQ-HHARLIYVST  278 (508)
T ss_dssp             C-CSSCCSEEEECCCC---------CCHHHHHHHHHHHHHHHHT-TTCEEEEEEE
T ss_pred             C-CccCCCEEEECCceecC-CCCHHHHhhhHHHHHHHHHHHHHh-CCCcEEEeCC
Confidence            2 56899999999986532 223455677899999999999887 3333443333

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=97.65  E-value=0.00023  Score=63.10  Aligned_cols=114  Identities=24%  Similarity=0.263  Sum_probs=67.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEE--EecCCCHHhhh-------CC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRG--FLGQQQLEDAL-------TG  114 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~--~~~t~d~~eal-------~~  114 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++..   ......  ++...+.++.+       ..
T Consensus        11 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   85 (271)
T 3tzq_B           11 NKVAIITGACGGIGLETSRVLARAGA--RVVLADLPETDLAGAAASVGR---GAVHHVVDLTNEVSVRALIDFTIDTFGR   85 (271)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSCHHHHHHHHCT---TCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhCC---CeEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            45899999999999999999999997  8999999872  222222211   011110  11111222223       38


Q ss_pred             CCEEEEcCCCCCC-CC----Cc---hhhHHHhhHHHHHHHHHHH----HHhCCCcEEEEecCC
Q 022947          115 MDIVIIPAGVPRK-PG----MT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNP  165 (289)
Q Consensus       115 aDiVIitag~~~~-~g----~~---r~d~~~~N~~i~~~i~~~i----~~~~p~aiviv~tNP  165 (289)
                      .|++|.+||.... ..    .+   ....+..|+.....+++.+    .+. ..+.|+++|..
T Consensus        86 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~isS~  147 (271)
T 3tzq_B           86 LDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISA-GGGAIVNISSA  147 (271)
T ss_dssp             CCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEECCG
T ss_pred             CCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEECCH
Confidence            9999999997522 11    11   2345667766555555544    443 45667776643

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=97.64  E-value=0.0011  Score=59.66  Aligned_cols=115  Identities=21%  Similarity=0.251  Sum_probs=68.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCCH---H-------hhh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL---E-------DAL  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~---~-------eal  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++.... ..++..+. +-+|.   +       +.+
T Consensus        41 ~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  117 (293)
T 3rih_A           41 ARSVLVTGGTKGIGRGIATVFARAGA--NVAVAARSPRELSSVTAELGELG-AGNVIGVRLDVSDPGSCADAARTVVDAF  117 (293)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHTTSS-SSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhC-CCcEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999999998  9999999862  22233343321 12233221 11221   1       223


Q ss_pred             CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHH----HHHHHhCCCcEEEEecC
Q 022947          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLC----EGIAKCCPKAIVNLISN  164 (289)
Q Consensus       113 ~~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~~~i~----~~i~~~~p~aiviv~tN  164 (289)
                      ...|++|.+||.....   ..+   -...+..|+.....+.    +.+++.. .+.|+++|.
T Consensus       118 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~iV~isS  178 (293)
T 3rih_A          118 GALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASG-RGRVILTSS  178 (293)
T ss_dssp             SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHS-SCEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEeC
Confidence            4779999999974321   112   1234566665544444    4445544 355665554

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.64  E-value=0.00017  Score=63.01  Aligned_cols=111  Identities=19%  Similarity=0.194  Sum_probs=66.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--hHHhhhhcccCCceEEEEecCCC---HHhhh-------C
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLGQQQ---LEDAL-------T  113 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g~~~DL~~~~~~~~v~~~~~t~d---~~eal-------~  113 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++..  ....++.     ..... .+-+|   +++.+       .
T Consensus         5 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~-~D~~~~~~~~~~~~~~~~~~g   76 (245)
T 1uls_A            5 DKAVLITGAAHGIGRATLELFAKEGA--RLVACDIEEGPLREAAEAVG-----AHPVV-MDVADPASVERGFAEALAHLG   76 (245)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTT-----CEEEE-CCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcC-----CEEEE-ecCCCHHHHHHHHHHHHHHcC
Confidence            45899999999999999999999997  89999987521  1111110     01000 01112   22222       3


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 022947          114 GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (289)
Q Consensus       114 ~aDiVIitag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tN  164 (289)
                      ..|++|.+||......   .+   ..+.+..|+.....+++.+.++   ...+.|+++|.
T Consensus        77 ~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS  136 (245)
T 1uls_A           77 RLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTAS  136 (245)
T ss_dssp             SCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECC
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEcc
Confidence            5899999999753211   11   2345667776666665555443   23466776664

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=97.64  E-value=0.00046  Score=66.05  Aligned_cols=107  Identities=15%  Similarity=0.221  Sum_probs=66.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhccc----------------CCceEEEEecCCCHH
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----------------TNAVVRGFLGQQQLE  109 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~----------------~~~~v~~~~~t~d~~  109 (289)
                      ..|..|||. |+||..+|..|+..|+  +|+++|+++.  ++..|....                ....+..   ++|  
T Consensus        11 ~~~~~ViGl-GyvGlp~A~~La~~G~--~V~~~D~~~~--kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~---ttd--   80 (431)
T 3ojo_A           11 GSKLTVVGL-GYIGLPTSIMFAKHGV--DVLGVDINQQ--TIDKLQNGQISIEEPGLQEVYEEVLSSGKLKV---STT--   80 (431)
T ss_dssp             -CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---ESS--
T ss_pred             CCccEEEee-CHHHHHHHHHHHHCCC--EEEEEECCHH--HHHHHHCCCCCcCCCCHHHHHHhhcccCceEE---eCc--
Confidence            348999998 9999999999999998  9999999862  112222210                0123443   334  


Q ss_pred             hhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEe-cCCCcc
Q 022947          110 DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLI-SNPVNS  168 (289)
Q Consensus       110 eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~-tNPvd~  168 (289)
                        +++||+||++.+.|......+    ..++..+.+.++.+.++. |..+|+.- |-|.+.
T Consensus        81 --~~~aDvvii~VpTp~~~~~~~----~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgt  135 (431)
T 3ojo_A           81 --PEASDVFIIAVPTPNNDDQYR----SCDISLVMRALDSILPFLKKGNTIIVESTIAPKT  135 (431)
T ss_dssp             --CCCCSEEEECCCCCBCSSSSC----BBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTH
T ss_pred             --hhhCCEEEEEeCCCccccccC----CccHHHHHHHHHHHHHhCCCCCEEEEecCCChhH
Confidence              468999999998876432100    123455666666676655 44443332 344443

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=97.63  E-value=5.9e-05  Score=65.11  Aligned_cols=94  Identities=17%  Similarity=0.185  Sum_probs=61.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      +++||+|||+ |.+|..++..|...|+  +|.++|+++..  ..++...    .+..   + +++++++++|+||++...
T Consensus        27 ~~~~I~iiG~-G~~G~~la~~l~~~g~--~V~~~~r~~~~--~~~~~~~----g~~~---~-~~~~~~~~~DvVi~av~~   93 (215)
T 2vns_A           27 EAPKVGILGS-GDFARSLATRLVGSGF--KVVVGSRNPKR--TARLFPS----AAQV---T-FQEEAVSSPEVIFVAVFR   93 (215)
T ss_dssp             --CCEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSHHH--HHHHSBT----TSEE---E-EHHHHTTSCSEEEECSCG
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHc----CCce---e-cHHHHHhCCCEEEECCCh
Confidence            4579999997 9999999999998887  89999987521  1222221    1121   1 456889999999998641


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcc
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS  168 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~  168 (289)
                      .    . ..+.+        +    +....++.+++.++|+...
T Consensus        94 ~----~-~~~v~--------~----l~~~~~~~~vv~~s~g~~~  120 (215)
T 2vns_A           94 E----H-YSSLC--------S----LSDQLAGKILVDVSNPTEQ  120 (215)
T ss_dssp             G----G-SGGGG--------G----GHHHHTTCEEEECCCCCHH
T ss_pred             H----H-HHHHH--------H----HHHhcCCCEEEEeCCCccc
Confidence            1    1 11111        1    2222368889989998754

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=97.63  E-value=0.0003  Score=61.78  Aligned_cols=155  Identities=14%  Similarity=0.076  Sum_probs=84.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal-------  112 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++...  ..++..+. +-+|   .++.+       
T Consensus         9 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (260)
T 2ae2_A            9 GCTALVTGGSRGIGYGIVEELASLGA--SVYTCSRNQKELNDCLTQWRSK--GFKVEASVCDLSSRSERQELMNTVANHF   84 (260)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999997  8999998762  2122233221  11222221 1122   22222       


Q ss_pred             -CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHH----HHhCCCcEEEEecCCCcccHHHHHHHHHHhC
Q 022947          113 -TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (289)
Q Consensus       113 -~~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i----~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~  181 (289)
                       ...|++|.+||.....   ..+   ....+..|+.....+.+.+    ++. ..+.|+++|.....            .
T Consensus        85 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~------------~  151 (260)
T 2ae2_A           85 HGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKAS-ERGNVVFISSVSGA------------L  151 (260)
T ss_dssp             TTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-SSEEEEEECCGGGT------------S
T ss_pred             CCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcchhhc------------c
Confidence             5799999999975321   111   2235566766555554444    333 34666666643211            1


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       182 ~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                      +.|..-.++.+......+-+.++++++  +..|++.++
T Consensus       152 ~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v  187 (260)
T 2ae2_A          152 AVPYEAVYGATKGAMDQLTRCLAFEWA--KDNIRVNGV  187 (260)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEEEE
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHh--hcCcEEEEE
Confidence            222222233333223345566777763  344555444

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=97.63  E-value=9.3e-05  Score=68.76  Aligned_cols=89  Identities=16%  Similarity=0.203  Sum_probs=59.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcccCCceEEEEecCCCHHhhhC----CCCEEEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALT----GMDIVII  120 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~~~~~~v~~~~~t~d~~eal~----~aDiVIi  120 (289)
                      .+||+|||+ |.+|.+++..|...|+  +|+++|+++. ...+.++.     .  ..   +.++.++++    ++|+||+
T Consensus         8 ~~kIgIIG~-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~~a~~~G-----~--~~---~~~~~e~~~~a~~~aDlVil   74 (341)
T 3ktd_A            8 SRPVCILGL-GLIGGSLLRDLHAANH--SVFGYNRSRSGAKSAVDEG-----F--DV---SADLEATLQRAAAEDALIVL   74 (341)
T ss_dssp             SSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHHTT-----C--CE---ESCHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEEee-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHcC-----C--ee---eCCHHHHHHhcccCCCEEEE
Confidence            468999998 9999999999999997  8999998762 11222211     1  11   134555554    5799999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       121 tag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      +..                ...+.++++.+..+.|+++|+.++
T Consensus        75 avP----------------~~~~~~vl~~l~~~~~~~iv~Dv~  101 (341)
T 3ktd_A           75 AVP----------------MTAIDSLLDAVHTHAPNNGFTDVV  101 (341)
T ss_dssp             CSC----------------HHHHHHHHHHHHHHCTTCCEEECC
T ss_pred             eCC----------------HHHHHHHHHHHHccCCCCEEEEcC
Confidence            852                123445556666666777766554

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=97.62  E-value=0.00033  Score=67.67  Aligned_cols=98  Identities=11%  Similarity=0.117  Sum_probs=64.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCC---CCEEEEcC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTG---MDIVIIPA  122 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~---aDiVIita  122 (289)
                      ++||+|||+ |.+|..++..|+..|+  +|.++|+++..  ..++........+..   ++++++.+++   +|+||++.
T Consensus         5 ~~~IgvIG~-G~mG~~lA~~L~~~G~--~V~v~dr~~~~--~~~l~~~~~~~gi~~---~~s~~e~v~~l~~aDvVilav   76 (474)
T 2iz1_A            5 QANFGVVGM-AVMGKNLALNVESRGY--TVAIYNRTTSK--TEEVFKEHQDKNLVF---TKTLEEFVGSLEKPRRIMLMV   76 (474)
T ss_dssp             TBSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHH--HHHHHHHTTTSCEEE---CSSHHHHHHTBCSSCEEEECC
T ss_pred             CCcEEEEee-HHHHHHHHHHHHhCCC--EEEEEcCCHHH--HHHHHHhCcCCCeEE---eCCHHHHHhhccCCCEEEEEc
Confidence            368999998 9999999999999998  89999987521  111221100012332   3467676665   99999985


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 022947          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPV  166 (289)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPv  166 (289)
                      ..+               ..++++++.+.... |+.+|+..+|..
T Consensus        77 p~~---------------~~v~~vl~~l~~~l~~g~iiId~s~~~  106 (474)
T 2iz1_A           77 QAG---------------AATDATIKSLLPLLDIGDILIDGGNTH  106 (474)
T ss_dssp             CTT---------------HHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred             cCc---------------hHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence            321               12444556666655 667777777765

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=97.62  E-value=0.00044  Score=59.69  Aligned_cols=116  Identities=18%  Similarity=0.183  Sum_probs=66.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCcc-----EEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh---
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL---  112 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~-----eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal---  112 (289)
                      ++|.|+||+|.+|..++..|+..|...     +|+++|+++.  .....++...  ..++..+. +-.|   +++.+   
T Consensus         3 k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~   80 (244)
T 2bd0_A            3 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAE--GALTDTITADISDMADVRRLTTHI   80 (244)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTT--TCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHcc--CCeeeEEEecCCCHHHHHHHHHHH
Confidence            479999999999999999999887522     7899998752  1122222221  12232221 1112   22222   


Q ss_pred             ----CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHH----HHhCCCcEEEEecCC
Q 022947          113 ----TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNP  165 (289)
Q Consensus       113 ----~~aDiVIitag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i----~~~~p~aiviv~tNP  165 (289)
                          .+.|+||++||......   .+   ....+..|+.....+.+.+    ++. ..+.|+++|..
T Consensus        81 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~isS~  146 (244)
T 2bd0_A           81 VERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQ-HSGHIFFITSV  146 (244)
T ss_dssp             HHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG
T ss_pred             HHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC-CCCEEEEEecc
Confidence                37999999999753211   11   2334556665554444444    333 34667766653

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=97.62  E-value=0.00015  Score=64.46  Aligned_cols=113  Identities=25%  Similarity=0.373  Sum_probs=67.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhh-------h
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------L  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------l  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  .|++.|+++.  .....++.     ..+..+. +-+|   .++.       +
T Consensus        27 gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~~~~~   99 (266)
T 3grp_A           27 GRKALVTGATGGIGEAIARCFHAQGA--IVGLHGTREDKLKEIAADLG-----KDVFVFSANLSDRKSIKQLAEVAEREM   99 (266)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHC-----SSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CceEEEEeecCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999997  8999998762  11111221     1222111 1112   2222       2


Q ss_pred             CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecCCC
Q 022947          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPV  166 (289)
Q Consensus       113 ~~aDiVIitag~~~~~---g~~---r~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~tNPv  166 (289)
                      ...|++|.+||.....   ..+   -.+.+..|+..    .+.+.+.+.+.. .+.|+++|.-.
T Consensus       100 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~Iv~isS~~  162 (266)
T 3grp_A          100 EGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRR-YGRIINITSIV  162 (266)
T ss_dssp             TSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCC-
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcEEEEECCHH
Confidence            4899999999975321   111   23345667665    556666665543 45666666543

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=97.62  E-value=0.00038  Score=67.36  Aligned_cols=99  Identities=17%  Similarity=0.165  Sum_probs=64.1

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhc-ccCCceEEEEecCCCHHhhh---CCCCEEEEcC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH-MDTNAVVRGFLGQQQLEDAL---TGMDIVIIPA  122 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~-~~~~~~v~~~~~t~d~~eal---~~aDiVIita  122 (289)
                      |||+|||+ |.+|+.++..|+..|+  +|.++|+++...  .++.. ......+..   ++++++.+   +++|+||++.
T Consensus         3 m~IgvIG~-G~mG~~lA~~La~~G~--~V~v~dr~~~~~--~~l~~~~~~g~gi~~---~~~~~e~v~~l~~aDvVilaV   74 (482)
T 2pgd_A            3 ADIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTVSKV--DDFLANEAKGTKVLG---AHSLEEMVSKLKKPRRIILLV   74 (482)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSTHHH--HHHHHTTTTTSSCEE---CSSHHHHHHHBCSSCEEEECS
T ss_pred             CeEEEECh-HHHHHHHHHHHHHCCC--eEEEEeCCHHHH--HHHHhccccCCCeEE---eCCHHHHHhhccCCCEEEEeC
Confidence            68999998 9999999999999998  899999876221  12221 000012222   34666665   5999999985


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcc
Q 022947          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS  168 (289)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~  168 (289)
                      ..+               ..++++++.+.... |+.+|+..+|....
T Consensus        75 p~~---------------~~v~~vl~~l~~~l~~g~iII~~s~~~~~  106 (482)
T 2pgd_A           75 KAG---------------QAVDNFIEKLVPLLDIGDIIIDGGNSEYR  106 (482)
T ss_dssp             CTT---------------HHHHHHHHHHHHHCCTTCEEEECSCCCHH
T ss_pred             CCh---------------HHHHHHHHHHHhhcCCCCEEEECCCCCHH
Confidence            321               12344455565554 66777777776543

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=97.62  E-value=0.00029  Score=61.70  Aligned_cols=114  Identities=8%  Similarity=-0.006  Sum_probs=66.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch-hHHhhhhcccCCceEEEEecCCCHHhhh-------CCCCEE
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGFLGQQQLEDAL-------TGMDIV  118 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~-g~~~DL~~~~~~~~v~~~~~t~d~~eal-------~~aDiV  118 (289)
                      +++.|+||+|.+|..++..|+..|.  +|+++|+++.. ....++....  .++..+ ...+.++.+       ...|++
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~--~~~~~~-d~~~v~~~~~~~~~~~g~iD~l   76 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGH--TVACHDESFKQKDELEAFAETY--PQLKPM-SEQEPAELIEAVTSAYGQVDVL   76 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHC--TTSEEC-CCCSHHHHHHHHHHHHSCCCEE
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhcC--CcEEEE-CHHHHHHHHHHHHHHhCCCCEE
Confidence            4799999999999999999999997  89999987621 1122232211  111111 122333333       478999


Q ss_pred             EEcCCCC-CC-C--CCc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecCCC
Q 022947          119 IIPAGVP-RK-P--GMT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPV  166 (289)
Q Consensus       119 Iitag~~-~~-~--g~~---r~d~~~~N~~i~----~~i~~~i~~~~p~aiviv~tNPv  166 (289)
                      |.+||.. .. +  ..+   ....+..|+...    +.+.+.+++.. .+.|+++|.-.
T Consensus        77 v~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~  134 (254)
T 1zmt_A           77 VSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK-SGHIIFITSAT  134 (254)
T ss_dssp             EEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCST
T ss_pred             EECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECCcc
Confidence            9999975 22 1  111   123455665544    44444444443 45666666543

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=97.62  E-value=0.00018  Score=62.89  Aligned_cols=151  Identities=16%  Similarity=0.154  Sum_probs=84.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe----cCCCHHhh-------h
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL----GQQQLEDA-------L  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~----~t~d~~ea-------l  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+++.  .....++.     .++..+.    ...+.++.       +
T Consensus         6 gk~vlVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~   78 (247)
T 3rwb_A            6 GKTALVTGAAQGIGKAIAARLAADGA--TVIVSDINAEGAKAAAASIG-----KKARAIAADISDPGSVKALFAEIQALT   78 (247)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHC-----TTEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CceEEEEcCCCCHHHHHHHHHHHHHHC
Confidence            45899999999999999999999997  8999998762  11122221     1111110    01112222       2


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCC
Q 022947          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g---~~---r~d~~~~N~~i~----~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~  182 (289)
                      ...|++|.+||......   .+   -...+..|+...    +.+.+.+++..+.+.|++++.....            .+
T Consensus        79 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~------------~~  146 (247)
T 3rwb_A           79 GGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFF------------AG  146 (247)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHH------------HT
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhc------------cC
Confidence            47999999999753221   11   223456665544    4445557666656777776643211            12


Q ss_pred             CCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeee
Q 022947          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVP  217 (289)
Q Consensus       183 ~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~  217 (289)
                      .|..-.++.+...-..+-+.+|.+++  +..|++.
T Consensus       147 ~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn  179 (247)
T 3rwb_A          147 TPNMAAYVAAKGGVIGFTRALATELG--KYNITAN  179 (247)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEE
T ss_pred             CCCchhhHHHHHHHHHHHHHHHHHhh--hcCeEEE
Confidence            33333333333223345566777763  3445544

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=97.62  E-value=0.00092  Score=58.30  Aligned_cols=113  Identities=19%  Similarity=0.244  Sum_probs=67.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-chhHHhhhhcccCCceEEEEe-cCCC---HHhh-------hC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------LT  113 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------l~  113 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++ ..... ++....  .++..+. +-+|   .++.       +.
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~-~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (249)
T 2ew8_A            7 DKLAVITGGANGIGRAIAERFAVEGA--DIAIADLVPAPEAEA-AIRNLG--RRVLTVKCDVSQPGDVEAFGKQVISTFG   81 (249)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHHH-HHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCchhHHHH-HHHhcC--CcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            45899999999999999999999997  899999876 32211 222211  1222211 1122   2222       35


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 022947          114 GMDIVIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       114 ~aDiVIitag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      ..|++|.+||......   .+   ..+.+..|+..    .+.+.+.+++.. .+.|+++|.
T Consensus        82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  141 (249)
T 2ew8_A           82 RCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG-WGRIINLTS  141 (249)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CeEEEEEcc
Confidence            8999999999753211   11   22355667655    445555565543 456666654

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=97.62  E-value=0.00013  Score=64.19  Aligned_cols=116  Identities=18%  Similarity=0.246  Sum_probs=67.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCC---CHHhhhC------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQ---QLEDALT------  113 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~---d~~eal~------  113 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++........+..+. +-+   ++++.++      
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (260)
T 2z1n_A            7 GKLAVVTAGSSGLGFASALELARNGA--RLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDLG   84 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            35899999999999999999999997  8999998762  21222232110011222211 111   2233343      


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecC
Q 022947          114 GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       114 ~aDiVIitag~~~~~g---~~---r~d~~~~N~~i~----~~i~~~i~~~~p~aiviv~tN  164 (289)
                      +.|++|.+||......   .+   ....+..|+...    +.+.+.+.+.. .+.|+++|.
T Consensus        85 gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  144 (260)
T 2z1n_A           85 GADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKG-WGRMVYIGS  144 (260)
T ss_dssp             CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECc
Confidence            5999999999653211   11   233456666555    55555555543 456666654

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=97.62  E-value=0.00047  Score=67.09  Aligned_cols=99  Identities=14%  Similarity=0.131  Sum_probs=66.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhc-ccCCceEEEEecCCCHHhhhCC---CCEEEEc
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH-MDTNAVVRGFLGQQQLEDALTG---MDIVIIP  121 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~-~~~~~~v~~~~~t~d~~eal~~---aDiVIit  121 (289)
                      ..||+|||+ |.+|+.++..|+..|+  +|.++|+++..  +.++.. ......+.   .+.++++++++   +|+||++
T Consensus        10 ~~~IgvIGl-G~MG~~lA~~La~~G~--~V~v~dr~~~~--~~~l~~~~~~~~gi~---~~~s~~e~v~~l~~aDvVil~   81 (497)
T 2p4q_A           10 SADFGLIGL-AVMGQNLILNAADHGF--TVCAYNRTQSK--VDHFLANEAKGKSII---GATSIEDFISKLKRPRKVMLL   81 (497)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSSHH--HHHHHHTTTTTSSEE---CCSSHHHHHHTSCSSCEEEEC
T ss_pred             CCCEEEEee-HHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHcccccCCCeE---EeCCHHHHHhcCCCCCEEEEE
Confidence            348999998 9999999999999998  89999997622  122222 10001222   24567777766   9999998


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCc
Q 022947          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVN  167 (289)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd  167 (289)
                      ...+               ..++++++.+..+. |+.+||..+|-..
T Consensus        82 Vp~~---------------~~v~~vl~~l~~~l~~g~iIId~s~~~~  113 (497)
T 2p4q_A           82 VKAG---------------APVDALINQIVPLLEKGDIIIDGGNSHF  113 (497)
T ss_dssp             CCSS---------------HHHHHHHHHHGGGCCTTCEEEECSCCCH
T ss_pred             cCCh---------------HHHHHHHHHHHHhCCCCCEEEECCCCCh
Confidence            5321               12455666777665 5677877777654

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=97.61  E-value=7.6e-05  Score=64.56  Aligned_cols=115  Identities=19%  Similarity=0.263  Sum_probs=67.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cC---CCHHhhhC------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQ---QQLEDALT------  113 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t---~d~~eal~------  113 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|++..  .....++.... ...+..+. +-   .+++++++      
T Consensus         7 ~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (248)
T 2pnf_A            7 GKVSLVTGSTRGIGRAIAEKLASAGS--TVIITGTSGERAKAVAEEIANKY-GVKAHGVEMNLLSEESINKAFEEIYNLV   83 (248)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhhc-CCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence            45899999999999999999999997  8999998752  11112222100 11222211 11   12333333      


Q ss_pred             -CCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecC
Q 022947          114 -GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       114 -~aDiVIitag~~~~~g---~~---r~d~~~~N~~i~----~~i~~~i~~~~p~aiviv~tN  164 (289)
                       +.|+||++||......   .+   ..+.+..|+...    +.+.+.+.+.. .+.|+++|.
T Consensus        84 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~~sS  144 (248)
T 2pnf_A           84 DGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQR-WGRIVNISS  144 (248)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHT-CEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CcEEEEEcc
Confidence             8999999998753211   11   234566676666    44444444443 455666553

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=97.61  E-value=0.00013  Score=64.36  Aligned_cols=111  Identities=17%  Similarity=0.267  Sum_probs=67.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--hHHhhhhcccCCceEEEEe-cC---CCHHhhhC------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFL-GQ---QQLEDALT------  113 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g~~~DL~~~~~~~~v~~~~-~t---~d~~eal~------  113 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|+++..  ....++..     .+..+. +-   .++++.++      
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~~   79 (260)
T 1nff_A            7 GKVALVSGGARGMGASHVRAMVAEGA--KVVFGDILDEEGKAMAAELAD-----AARYVHLDVTQPAQWKAAVDTAVTAF   79 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTGG-----GEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhc-----CceEEEecCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999997  89999987621  11122221     111111 11   12333343      


Q ss_pred             -CCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecC
Q 022947          114 -GMDIVIIPAGVPRKP---GMT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       114 -~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~----~~i~~~i~~~~p~aiviv~tN  164 (289)
                       +.|++|.+||.....   ..+   ..+.+..|+...    +.+.+.+++.. .+.|+++|.
T Consensus        80 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  140 (260)
T 1nff_A           80 GGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAG-RGSIINISS  140 (260)
T ss_dssp             SCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEEee
Confidence             899999999975321   111   233556676555    55566665543 456666654

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=97.61  E-value=8.2e-05  Score=65.35  Aligned_cols=115  Identities=20%  Similarity=0.216  Sum_probs=70.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeC-CCc--hhHHhhhhcccCCceEEEEe-cCC---CHHhhhC-----
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV-VNT--PGVTADISHMDTNAVVRGFL-GQQ---QLEDALT-----  113 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~-~~~--~g~~~DL~~~~~~~~v~~~~-~t~---d~~eal~-----  113 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+ +..  .....++....  .++..+. +-+   ++.+.++     
T Consensus        21 ~k~vlItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   96 (274)
T 1ja9_A           21 GKVALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKLG--AQGVAIQADISKPSEVVALFDKAVSH   96 (274)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCchHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            46899999999999999999999997  8999998 331  11122232211  1222211 111   2333333     


Q ss_pred             --CCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 022947          114 --GMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (289)
Q Consensus       114 --~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tN  164 (289)
                        +.|+||.+||.....   ..+   ..+.+..|+.....+.+.+.+.. ..+.|+++|.
T Consensus        97 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS  156 (274)
T 1ja9_A           97 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSS  156 (274)
T ss_dssp             HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEcC
Confidence              899999999875321   111   23456778777777777766653 2256666654

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=97.60  E-value=0.00039  Score=61.85  Aligned_cols=116  Identities=15%  Similarity=0.093  Sum_probs=67.8

Q ss_pred             CCEEEEEcCCCc--cHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEe-cCCC---HHhh-------h
Q 022947           46 GFKVAVLGAAGG--IGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------L  112 (289)
Q Consensus        46 ~~KI~IIGaaG~--VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------l  112 (289)
                      .++|.|+||+|+  +|..++..|+..|.  +|+++|+++......++.....  .+..+. +-+|   .++.       +
T Consensus        26 ~k~vlVTGasg~~GIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~~~  101 (280)
T 3nrc_A           26 GKKILITGLLSNKSIAYGIAKAMHREGA--ELAFTYVGQFKDRVEKLCAEFN--PAAVLPCDVISDQEIKDLFVELGKVW  101 (280)
T ss_dssp             TCEEEECCCCSTTCHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHGGGC--CSEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHcCC--EEEEeeCchHHHHHHHHHHhcC--CceEEEeecCCHHHHHHHHHHHHHHc
Confidence            358999999877  99999999999997  8999999873222333322211  111111 1112   2222       2


Q ss_pred             CCCCEEEEcCCCCCCC---C-----Cc---hhhHHHhhHHHHHHHHHHHHHhC--CCcEEEEecCC
Q 022947          113 TGMDIVIIPAGVPRKP---G-----MT---RDDLFNINAGIVKTLCEGIAKCC--PKAIVNLISNP  165 (289)
Q Consensus       113 ~~aDiVIitag~~~~~---g-----~~---r~d~~~~N~~i~~~i~~~i~~~~--p~aiviv~tNP  165 (289)
                      ...|++|.+||.....   +     .+   -.+.+..|+.....+.+.+...-  ..+.|+++|..
T Consensus       102 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~  167 (280)
T 3nrc_A          102 DGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYI  167 (280)
T ss_dssp             SSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECG
T ss_pred             CCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecc
Confidence            4679999999975421   1     11   12345667665555555554431  25667776653

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=97.60  E-value=0.00052  Score=60.46  Aligned_cols=116  Identities=20%  Similarity=0.226  Sum_probs=67.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal-------  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++.......++..+. +-+|   +++.+       
T Consensus        13 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   90 (267)
T 1iy8_A           13 DRVVLITGGGSGLGRATAVRLAAEGA--KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   90 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999997  8999998762  11222232210011222211 1122   22223       


Q ss_pred             CCCCEEEEcCCCCCC--C--CCc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 022947          113 TGMDIVIIPAGVPRK--P--GMT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       113 ~~aDiVIitag~~~~--~--g~~---r~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      ...|++|.+||....  +  ..+   ....+..|+.    ..+.+.+.+++.. .+.|+++|.
T Consensus        91 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  152 (267)
T 1iy8_A           91 GRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQG-SGMVVNTAS  152 (267)
T ss_dssp             SCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             CCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEEcc
Confidence            378999999997533  1  111   2234555654    4455666666554 456666654

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=97.60  E-value=0.00031  Score=67.99  Aligned_cols=99  Identities=13%  Similarity=0.159  Sum_probs=63.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcc-c---CCceEEEEecCCCHHhhhC---CCCEEE
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-D---TNAVVRGFLGQQQLEDALT---GMDIVI  119 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~-~---~~~~v~~~~~t~d~~eal~---~aDiVI  119 (289)
                      |||+|||+ |.+|..++..|+..|+  +|.++|+++..  +.++... .   ....+..   ++++++.++   ++|+||
T Consensus         2 MkIgVIG~-G~mG~~lA~~La~~G~--~V~v~dr~~~~--~~~l~~~~g~~~~~~~i~~---~~~~~e~v~~l~~aDvVi   73 (478)
T 1pgj_A            2 MDVGVVGL-GVMGANLALNIAEKGF--KVAVFNRTYSK--SEEFMKANASAPFAGNLKA---FETMEAFAASLKKPRKAL   73 (478)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHH--HHHHHHHTTTSTTGGGEEE---CSCHHHHHHHBCSSCEEE
T ss_pred             CEEEEECh-HHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHhcCCCCCCCCeEE---ECCHHHHHhcccCCCEEE
Confidence            68999998 9999999999999998  89999987521  1111111 0   0112332   346666665   599999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcc
Q 022947          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS  168 (289)
Q Consensus       120 itag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~  168 (289)
                      ++...+               ..++++++.+..+. |+.+|+..+|-...
T Consensus        74 laVp~~---------------~~v~~vl~~l~~~l~~g~iIId~sng~~~  108 (478)
T 1pgj_A           74 ILVQAG---------------AATDSTIEQLKKVFEKGDILVDTGNAHFK  108 (478)
T ss_dssp             ECCCCS---------------HHHHHHHHHHHHHCCTTCEEEECCCCCHH
T ss_pred             EecCCh---------------HHHHHHHHHHHhhCCCCCEEEECCCCChH
Confidence            986321               12344455565554 67778777877643

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=97.60  E-value=0.001  Score=57.54  Aligned_cols=119  Identities=15%  Similarity=0.177  Sum_probs=68.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhccc-CCceEEEEec-CCC---HHh-------
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMD-TNAVVRGFLG-QQQ---LED-------  110 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~-~~~~v~~~~~-t~d---~~e-------  110 (289)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++.... ....+..... ..+   +.+       
T Consensus        13 ~~k~vlITGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~   90 (247)
T 3i1j_A           13 KGRVILVTGAARGIGAAAARAYAAHGA--SVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEH   90 (247)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHH
Confidence            356899999999999999999999998  8999999862  22222232221 1111111110 011   112       


Q ss_pred             hhCCCCEEEEcCCCCCCCC----Cc---hhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 022947          111 ALTGMDIVIIPAGVPRKPG----MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNP  165 (289)
Q Consensus       111 al~~aDiVIitag~~~~~g----~~---r~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tNP  165 (289)
                      .+...|++|.+||.....+    .+   -.+.+..|+.....+.+.+..+   ...+.|+++|..
T Consensus        91 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~  155 (247)
T 3i1j_A           91 EFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSS  155 (247)
T ss_dssp             HHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECCG
T ss_pred             hCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcch
Confidence            2348899999999742221    11   2234566665555555544322   245667776643

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=97.60  E-value=0.00049  Score=59.24  Aligned_cols=115  Identities=17%  Similarity=0.213  Sum_probs=66.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEE-eCCCc--hhHHhhhhcccCCceEEEEecCCC---HHhh-------hC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNT--PGVTADISHMDTNAVVRGFLGQQQ---LEDA-------LT  113 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~Lv-D~~~~--~g~~~DL~~~~~~~~v~~~~~t~d---~~ea-------l~  113 (289)
                      ++|.|+||+|.+|..++..|+..|.  +|+++ ++++.  .....++.............+-+|   +++.       +.
T Consensus         2 k~vlITGasggiG~~~a~~l~~~G~--~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (245)
T 2ph3_A            2 RKALITGASRGIGRAIALRLAEDGF--ALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLG   79 (245)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcC
Confidence            4899999999999999999999997  88887 66542  111222222111111101111122   2222       34


Q ss_pred             CCCEEEEcCCCCCCC---CC---chhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 022947          114 GMDIVIIPAGVPRKP---GM---TRDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       114 ~aDiVIitag~~~~~---g~---~r~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      +.|+||++||.....   ..   +..+.+..|+..    .+.+.+.+++.. .+.|+++|.
T Consensus        80 ~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~~sS  139 (245)
T 2ph3_A           80 GLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKAR-FGRIVNITS  139 (245)
T ss_dssp             CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcC-CCEEEEEeC
Confidence            899999999975321   11   123455667666    566666665543 456666664

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=97.60  E-value=0.00022  Score=63.64  Aligned_cols=112  Identities=17%  Similarity=0.167  Sum_probs=65.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCC---CHHhh-------h
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQ---QLEDA-------L  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~---d~~ea-------l  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++.     ..+..+. +-+   +.++.       +
T Consensus        27 ~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~~~~~   99 (277)
T 4dqx_A           27 QRVCIVTGGGSGIGRATAELFAKNGA--YVVVADVNEDAAVRVANEIG-----SKAFGVRVDVSSAKDAESMVEKTTAKW   99 (277)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHC-----TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            34899999999999999999999998  8999998762  11111111     1111110 111   22222       2


Q ss_pred             CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 022947          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (289)
Q Consensus       113 ~~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tN  164 (289)
                      ...|++|.+||.....   ..+   ....+..|+.....+.+.+..+   ...+.|+++|.
T Consensus       100 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS  160 (277)
T 4dqx_A          100 GRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTS  160 (277)
T ss_dssp             SCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECC
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECc
Confidence            3889999999975321   111   2334566766555444444332   23466777664

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=97.60  E-value=0.00029  Score=63.41  Aligned_cols=154  Identities=12%  Similarity=0.104  Sum_probs=86.4

Q ss_pred             CCEEEEEcCCCc--cHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcccCCceEEEEe-cCCC---HHhh-------
Q 022947           46 GFKVAVLGAAGG--IGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------  111 (289)
Q Consensus        46 ~~KI~IIGaaG~--VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------  111 (289)
                      .+++.|+||+|.  +|..++..|+..|.  +|++.|+++. .....++....  ..+..+. +-+|   .++.       
T Consensus        31 gk~~lVTGasg~~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  106 (293)
T 3grk_A           31 GKRGLILGVANNRSIAWGIAKAAREAGA--ELAFTYQGDALKKRVEPLAEEL--GAFVAGHCDVADAASIDAVFETLEKK  106 (293)
T ss_dssp             TCEEEEECCCSSSSHHHHHHHHHHHTTC--EEEEEECSHHHHHHHHHHHHHH--TCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhc--CCceEEECCCCCHHHHHHHHHHHHHh
Confidence            458999999888  99999999999997  8999998751 11222222111  1111111 1112   2222       


Q ss_pred             hCCCCEEEEcCCCCC-----CC--CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHh
Q 022947          112 LTGMDIVIIPAGVPR-----KP--GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKV  180 (289)
Q Consensus       112 l~~aDiVIitag~~~-----~~--g~~---r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~  180 (289)
                      +...|++|.+||...     .+  ..+   -...+..|+.....+.+.+..+- ..+.|+++|......           
T Consensus       107 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~-----------  175 (293)
T 3grk_A          107 WGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAEK-----------  175 (293)
T ss_dssp             TSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGTS-----------
T ss_pred             cCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhcc-----------
Confidence            247899999999763     11  111   23456777777777777666553 357777776433211           


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeee
Q 022947          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVP  217 (289)
Q Consensus       181 ~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~  217 (289)
                       +.+..-.++.+..--..+-+.+|++++  +..|++.
T Consensus       176 -~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn  209 (293)
T 3grk_A          176 -VMPNYNVMGVAKAALEASVKYLAVDLG--PQNIRVN  209 (293)
T ss_dssp             -BCTTTTHHHHHHHHHHHHHHHHHHHHG--GGTEEEE
T ss_pred             -CCCchHHHHHHHHHHHHHHHHHHHHHh--HhCCEEE
Confidence             223222333333223345666777763  3344443

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=97.60  E-value=0.00047  Score=61.03  Aligned_cols=118  Identities=18%  Similarity=0.161  Sum_probs=72.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc---hhHHhhhhcccCCceEEEEe-cCCC---HHhhh-----
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-----  112 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~---~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal-----  112 (289)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|.+..   .....++....  .++..+. +-+|   .++.+     
T Consensus        17 ~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~   92 (270)
T 3is3_A           17 DGKVALVTGSGRGIGAAVAVHLGRLGA--KVVVNYANSTKDAEKVVSEIKALG--SDAIAIKADIRQVPEIVKLFDQAVA   92 (270)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            345899999999999999999999997  8999887651   22222333221  2222221 1122   22222     


Q ss_pred             --CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 022947          113 --TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPV  166 (289)
Q Consensus       113 --~~aDiVIitag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPv  166 (289)
                        ...|++|.+||......   .+   -...+..|+.....+.+.+..+- ..+.|++++...
T Consensus        93 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~  155 (270)
T 3is3_A           93 HFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNT  155 (270)
T ss_dssp             HHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTT
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCch
Confidence              37899999999753221   12   23456778777777777766654 356677666543

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.59  E-value=0.00024  Score=57.46  Aligned_cols=103  Identities=12%  Similarity=-0.040  Sum_probs=59.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-chh-HHhhhhcccCCceEEEEecC--CCHHhh-hCCCCEEE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPG-VTADISHMDTNAVVRGFLGQ--QQLEDA-LTGMDIVI  119 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~~g-~~~DL~~~~~~~~v~~~~~t--~d~~ea-l~~aDiVI  119 (289)
                      ..++|.|+|+ |.+|+.++..|...|+  +|+++|.++ ... ...+....  ...+..-..+  ..+.++ +.++|.||
T Consensus         2 ~~~~vlI~G~-G~vG~~la~~L~~~g~--~V~vid~~~~~~~~~~~~~~~~--~~~~i~gd~~~~~~l~~a~i~~ad~vi   76 (153)
T 1id1_A            2 RKDHFIVCGH-SILAINTILQLNQRGQ--NVTVISNLPEDDIKQLEQRLGD--NADVIPGDSNDSSVLKKAGIDRCRAIL   76 (153)
T ss_dssp             CCSCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHCT--TCEEEESCTTSHHHHHHHTTTTCSEEE
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCC--CEEEEECCChHHHHHHHHhhcC--CCeEEEcCCCCHHHHHHcChhhCCEEE
Confidence            3468999998 9999999999998887  899999874 211 11111111  1111110011  123344 89999999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEE-ecCCCc
Q 022947          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL-ISNPVN  167 (289)
Q Consensus       120 itag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv-~tNPvd  167 (289)
                      ++.+..           ..|..    ++..+++..|+..++. +.||..
T Consensus        77 ~~~~~d-----------~~n~~----~~~~a~~~~~~~~ii~~~~~~~~  110 (153)
T 1id1_A           77 ALSDND-----------ADNAF----VVLSAKDMSSDVKTVLAVSDSKN  110 (153)
T ss_dssp             ECSSCH-----------HHHHH----HHHHHHHHTSSSCEEEECSSGGG
T ss_pred             EecCCh-----------HHHHH----HHHHHHHHCCCCEEEEEECCHHH
Confidence            985311           23432    3444555667665554 456653

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.59  E-value=0.0003  Score=56.26  Aligned_cols=96  Identities=9%  Similarity=0.071  Sum_probs=59.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCC---HHh-hhCCCCEEEEc
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ---LED-ALTGMDIVIIP  121 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d---~~e-al~~aDiVIit  121 (289)
                      ..+|.|+|+ |.+|..++..|...|+  +++++|.++..  ...+....  ..+. ....++   +++ .+.++|+||++
T Consensus         7 ~~~viIiG~-G~~G~~la~~L~~~g~--~v~vid~~~~~--~~~~~~~g--~~~i-~gd~~~~~~l~~a~i~~ad~vi~~   78 (140)
T 3fwz_A            7 CNHALLVGY-GRVGSLLGEKLLASDI--PLVVIETSRTR--VDELRERG--VRAV-LGNAANEEIMQLAHLECAKWLILT   78 (140)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTC--CEEEEESCHHH--HHHHHHTT--CEEE-ESCTTSHHHHHHTTGGGCSEEEEC
T ss_pred             CCCEEEECc-CHHHHHHHHHHHHCCC--CEEEEECCHHH--HHHHHHcC--CCEE-ECCCCCHHHHHhcCcccCCEEEEE
Confidence            458999998 9999999999999998  99999998621  11222211  1111 111122   222 25799999998


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 022947          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      .+..           ..|..    ++..+++..|+..++.-.|
T Consensus        79 ~~~~-----------~~n~~----~~~~a~~~~~~~~iiar~~  106 (140)
T 3fwz_A           79 IPNG-----------YEAGE----IVASARAKNPDIEIIARAH  106 (140)
T ss_dssp             CSCH-----------HHHHH----HHHHHHHHCSSSEEEEEES
T ss_pred             CCCh-----------HHHHH----HHHHHHHHCCCCeEEEEEC
Confidence            5321           22332    3445666778877766554

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=97.58  E-value=0.00013  Score=63.04  Aligned_cols=114  Identities=21%  Similarity=0.238  Sum_probs=65.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEE-eCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhhC------
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDALT------  113 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~Lv-D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal~------  113 (289)
                      ++|.|+||+|.+|..++..|+..|.  +|++. ++++.  .....++...  ..++..+. +-+|   +++.++      
T Consensus         2 k~vlVTGasggiG~~la~~l~~~G~--~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   77 (244)
T 1edo_A            2 PVVVVTGASRGIGKAIALSLGKAGC--KVLVNYARSAKAAEEVSKQIEAY--GGQAITFGGDVSKEADVEAMMKTAIDAW   77 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHH--TCEEEEEECCTTSHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhc--CCcEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            4799999999999999999999997  78884 66542  1111222211  11222221 1112   223333      


Q ss_pred             -CCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 022947          114 -GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (289)
Q Consensus       114 -~aDiVIitag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tN  164 (289)
                       +.|++|++||......   .+   ..+.+..|+.....+.+.+.++   ...+.|+++|.
T Consensus        78 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  138 (244)
T 1edo_A           78 GTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIAS  138 (244)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECC
Confidence             7899999999754311   11   2335566766554444444332   23456666664

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=97.58  E-value=0.00012  Score=63.91  Aligned_cols=112  Identities=14%  Similarity=0.152  Sum_probs=65.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEe-cCCCH---H---hhhCCCCEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQL---E---DALTGMDIV  118 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~-~t~d~---~---eal~~aDiV  118 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++...  .++...   ..+..+. +-+|.   +   +.+...|++
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~--~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~id~l   78 (246)
T 2ag5_A            6 GKVIILTAAAQGIGQAAALAFAREGA--KVIATDINESKL--QELEKY---PGIQTRVLDVTKKKQIDQFANEVERLDVL   78 (246)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHH--GGGGGS---TTEEEEECCTTCHHHHHHHHHHCSCCSEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHhc---cCceEEEeeCCCHHHHHHHHHHhCCCCEE
Confidence            45899999999999999999999997  899999875211  111110   0122111 11222   1   224688999


Q ss_pred             EEcCCCCCCC---CCc---hhhHHHhhHHHHHHH----HHHHHHhCCCcEEEEecCC
Q 022947          119 IIPAGVPRKP---GMT---RDDLFNINAGIVKTL----CEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       119 Iitag~~~~~---g~~---r~d~~~~N~~i~~~i----~~~i~~~~p~aiviv~tNP  165 (289)
                      |.+||.....   ..+   ....+..|+.....+    .+.+.+. ..+.|+++|..
T Consensus        79 v~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~g~iv~isS~  134 (246)
T 2ag5_A           79 FNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQ-KSGNIINMSSV  134 (246)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCS
T ss_pred             EECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEech
Confidence            9999975321   111   123455665544444    4444443 34566666653

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=97.58  E-value=0.00021  Score=63.83  Aligned_cols=112  Identities=19%  Similarity=0.160  Sum_probs=66.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEE-ecCCC---HHh-------hh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGF-LGQQQ---LED-------AL  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~-~~t~d---~~e-------al  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++..     .+..+ .+-+|   .++       .+
T Consensus        29 gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~d~~~v~~~~~~~~~~~  101 (277)
T 3gvc_A           29 GKVAIVTGAGAGIGLAVARRLADEGC--HVLCADIDGDAADAAATKIGC-----GAAACRVDVSDEQQIIAMVDACVAAF  101 (277)
T ss_dssp             TCEEEETTTTSTHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHCS-----SCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcCC-----cceEEEecCCCHHHHHHHHHHHHHHc
Confidence            45799999999999999999999997  9999998762  112222211     11111 01112   112       23


Q ss_pred             CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHH----HHHHhCCCcEEEEecCC
Q 022947          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCE----GIAKCCPKAIVNLISNP  165 (289)
Q Consensus       113 ~~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~~~i~~----~i~~~~p~aiviv~tNP  165 (289)
                      ...|++|.+||.....   ..+   -...+..|+.....+++    .+.+. ..+.|+++|..
T Consensus       102 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~Iv~isS~  163 (277)
T 3gvc_A          102 GGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIER-GGGAIVNLSSL  163 (277)
T ss_dssp             SSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEECCG
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcch
Confidence            4789999999975321   112   23356667665444444    44433 45677776643

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=97.58  E-value=0.0002  Score=62.21  Aligned_cols=112  Identities=17%  Similarity=0.231  Sum_probs=66.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceE-EEEe-cCCC---HHhh------h
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVV-RGFL-GQQQ---LEDA------L  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v-~~~~-~t~d---~~ea------l  112 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++.     ..+ ..+. +-+|   ++++      +
T Consensus        11 ~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (254)
T 2wsb_A           11 GACAAVTGAGSGIGLEICRAFAASGA--RLILIDREAAALDRAAQELG-----AAVAARIVADVTDAEAMTAAAAEAEAV   83 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHG-----GGEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhc-----ccceeEEEEecCCHHHHHHHHHHHHhh
Confidence            45899999999999999999999997  8999998752  11112221     111 1111 1112   2222      2


Q ss_pred             CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecCC
Q 022947          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       113 ~~aDiVIitag~~~~~---g~~---r~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~tNP  165 (289)
                      .+.|+||++||.....   ..+   ..+.+..|+..    .+.+.+.+++.. .+.|+++|..
T Consensus        84 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~isS~  145 (254)
T 2wsb_A           84 APVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARG-AGAIVNLGSM  145 (254)
T ss_dssp             SCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCG
T ss_pred             CCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEecc
Confidence            5789999999975321   111   23345567655    444555555443 4566666543

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.57  E-value=0.0005  Score=61.07  Aligned_cols=116  Identities=16%  Similarity=0.204  Sum_probs=68.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC---------------chhHHhhhhcccCCceEEEEe-cCCC--
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---------------TPGVTADISHMDTNAVVRGFL-GQQQ--  107 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~---------------~~g~~~DL~~~~~~~~v~~~~-~t~d--  107 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|++.               ......++...  ..++..+. +-+|  
T Consensus        15 gk~~lVTGas~gIG~a~a~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~   90 (280)
T 3pgx_A           15 GRVAFITGAARGQGRSHAVRLAAEGA--DIIACDICAPVSASVTYAPASPEDLDETARLVEDQ--GRKALTRVLDVRDDA   90 (280)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTT--TCCEEEEECCTTCHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeccccccccccccccCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHH
Confidence            45899999999999999999999998  999999842               11111222221  12222211 1112  


Q ss_pred             -HHhh-------hCCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecCC
Q 022947          108 -LEDA-------LTGMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       108 -~~ea-------l~~aDiVIitag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tNP  165 (289)
                       .++.       +...|++|.+||......   .+   -...+..|+.    ..+.+.+.+.+....+.|+++|..
T Consensus        91 ~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~  166 (280)
T 3pgx_A           91 ALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSS  166 (280)
T ss_dssp             HHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCG
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcch
Confidence             2222       237899999999753211   11   1234556654    445555555665556777777653

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.57  E-value=0.00016  Score=62.12  Aligned_cols=94  Identities=18%  Similarity=0.206  Sum_probs=60.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hh---HHhhhhcccCCceEEEEecCCCHHhhhC------CC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PG---VTADISHMDTNAVVRGFLGQQQLEDALT------GM  115 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g---~~~DL~~~~~~~~v~~~~~t~d~~eal~------~a  115 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++. ..   ...|+.+            ..++++.++      +.
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~D~~~------------~~~~~~~~~~~~~~~~~   67 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGY--RVVVLDLRREGEDLIYVEGDVTR------------EEDVRRAVARAQEEAPL   67 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSCCSSSSEEEECCTTC------------HHHHHHHHHHHHHHSCE
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEccCccccceEEEeCCCCC------------HHHHHHHHHHHHhhCCc
Confidence            35899999999999999999999997  8999998753 00   0111111            112233333      78


Q ss_pred             CEEEEcCCCCCCCC---C-------chhhHHHhhHHHHHHHHHHHHHh
Q 022947          116 DIVIIPAGVPRKPG---M-------TRDDLFNINAGIVKTLCEGIAKC  153 (289)
Q Consensus       116 DiVIitag~~~~~g---~-------~r~d~~~~N~~i~~~i~~~i~~~  153 (289)
                      |++|.++|......   .       ...+.+..|+.....+.+.+.+.
T Consensus        68 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~  115 (242)
T 1uay_A           68 FAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWA  115 (242)
T ss_dssp             EEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             eEEEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            99999998753221   1       22345666776666666555543

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=97.57  E-value=0.00029  Score=62.02  Aligned_cols=115  Identities=13%  Similarity=0.099  Sum_probs=70.7

Q ss_pred             CEEEEEcCC--CccHHHHHHHHHhCCCccEEEEEeCCC-chhHHhhhhcccCCceEEEEecCCC---HHhhhC-------
Q 022947           47 FKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQ---LEDALT-------  113 (289)
Q Consensus        47 ~KI~IIGaa--G~VGs~la~~L~~~g~~~eI~LvD~~~-~~g~~~DL~~~~~~~~v~~~~~t~d---~~eal~-------  113 (289)
                      +++.|+||+  |.+|..++..|+..|.  +|+++|+++ ......++........... .+-+|   .++.++       
T Consensus        10 k~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~~~~~~-~D~~~~~~v~~~~~~~~~~~g   86 (265)
T 1qsg_A           10 KRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQNDKLKGRVEEFAAQLGSDIVLQ-CDVAEDASIDTMFAELGKVWP   86 (265)
T ss_dssp             CEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEE-CCTTCHHHHHHHHHHHHTTCS
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHCCC--EEEEEcCcHHHHHHHHHHHHhcCCcEEEE-ccCCCHHHHHHHHHHHHHHcC
Confidence            579999998  8999999999999997  899999876 2222223322110111110 11112   222232       


Q ss_pred             CCCEEEEcCCCCCC-----C--C-Cc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 022947          114 GMDIVIIPAGVPRK-----P--G-MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (289)
Q Consensus       114 ~aDiVIitag~~~~-----~--g-~~---r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tN  164 (289)
                      ..|++|.+||....     +  . .+   ....+..|+.....+++.+.++- +.+.|+++|.
T Consensus        87 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  149 (265)
T 1qsg_A           87 KFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSY  149 (265)
T ss_dssp             SEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             CCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcc
Confidence            67999999997542     1  1 11   23456778888888887776653 2456777664

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=97.57  E-value=0.0003  Score=62.04  Aligned_cols=132  Identities=14%  Similarity=0.118  Sum_probs=66.6

Q ss_pred             CccccccccccccccccccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-c--hhHHhhhhcccCCce
Q 022947           22 PTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGVTADISHMDTNAV   98 (289)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~--~g~~~DL~~~~~~~~   98 (289)
                      -+.+--++-.+|.+..       +.++|.|+||+|.+|..++..|+..|.  +|++.+... .  .....++....  .+
T Consensus         9 ~~~~~~~~n~~~~~~l-------~~k~vlVTGas~gIG~~la~~l~~~G~--~v~i~~~r~~~~~~~~~~~l~~~~--~~   77 (267)
T 4iiu_A            9 SGVDLGTENLYFQSNA-------MSRSVLVTGASKGIGRAIARQLAADGF--NIGVHYHRDAAGAQETLNAIVANG--GN   77 (267)
T ss_dssp             -----------------------CCCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CC
T ss_pred             cccccCChhhhhcccc-------CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhcC--Cc
Confidence            3445555555554432       234799999999999999999999997  776655443 1  22222332221  22


Q ss_pred             EEEEe-cCCC---HHhhh-------CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHH----HHHHHHhCCCc
Q 022947           99 VRGFL-GQQQ---LEDAL-------TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTL----CEGIAKCCPKA  157 (289)
Q Consensus        99 v~~~~-~t~d---~~eal-------~~aDiVIitag~~~~~g---~~---r~d~~~~N~~i~~~i----~~~i~~~~p~a  157 (289)
                      +..+. +-+|   .++.+       ...|++|.+||......   .+   ..+.+..|+.....+    ...+.+....+
T Consensus        78 ~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g  157 (267)
T 4iiu_A           78 GRLLSFDVANREQCREVLEHEIAQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGG  157 (267)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCE
T ss_pred             eEEEEecCCCHHHHHHHHHHHHHHhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCc
Confidence            22221 1122   22223       38999999999754321   11   233456665544444    44444445667


Q ss_pred             EEEEecC
Q 022947          158 IVNLISN  164 (289)
Q Consensus       158 iviv~tN  164 (289)
                      .|+++|.
T Consensus       158 ~iv~isS  164 (267)
T 4iiu_A          158 RIITLSS  164 (267)
T ss_dssp             EEEEECC
T ss_pred             EEEEEcc
Confidence            7777764

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=97.57  E-value=0.00038  Score=63.16  Aligned_cols=65  Identities=22%  Similarity=0.309  Sum_probs=44.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      ..||++||. |.+|..+|..|+..|+  +|+.+|+++..  +.++....    ...   .+++.++++++|+||++.
T Consensus         5 s~kIgfIGL-G~MG~~mA~~L~~~G~--~V~v~dr~~~~--~~~l~~~G----~~~---~~s~~e~~~~~dvvi~~l   69 (297)
T 4gbj_A            5 SEKIAFLGL-GNLGTPIAEILLEAGY--ELVVWNRTASK--AEPLTKLG----ATV---VENAIDAITPGGIVFSVL   69 (297)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHTTC--EEEEC---------CTTTTTT----CEE---CSSGGGGCCTTCEEEECC
T ss_pred             CCcEEEEec-HHHHHHHHHHHHHCCC--eEEEEeCCHHH--HHHHHHcC----CeE---eCCHHHHHhcCCceeeec
Confidence            358999998 9999999999999998  99999987622  12222221    111   235678899999999985

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=97.57  E-value=0.00043  Score=61.19  Aligned_cols=148  Identities=9%  Similarity=0.014  Sum_probs=79.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEE-EEecCCCHHh-------hhCCCCE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLED-------ALTGMDI  117 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~-~~~~t~d~~e-------al~~aDi  117 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++... ..++..... ..+. ..+...+.++       .+...|+
T Consensus        27 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~-~~~~~~~~~-~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~  102 (260)
T 3gem_A           27 SAPILITGASQRVGLHCALRLLEHGH--RVIISYRTEHAS-VTELRQAGA-VALYGDFSCETGIMAFIDLLKTQTSSLRA  102 (260)
T ss_dssp             CCCEEESSTTSHHHHHHHHHHHHTTC--CEEEEESSCCHH-HHHHHHHTC-EEEECCTTSHHHHHHHHHHHHHHCSCCSE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCChHHH-HHHHHhcCC-eEEECCCCCHHHHHHHHHHHHHhcCCCCE
Confidence            34799999999999999999999997  899999987321 111111110 0000 0000111212       2347899


Q ss_pred             EEEcCCCCCCCC--Cch---hhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEE
Q 022947          118 VIIPAGVPRKPG--MTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLL  189 (289)
Q Consensus       118 VIitag~~~~~g--~~r---~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kvi  189 (289)
                      +|.+||......  .+.   ...+..|+.....+.+.+..+   ...+.|+++|.....            .+.+..-.+
T Consensus       103 lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~------------~~~~~~~~Y  170 (260)
T 3gem_A          103 VVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTR------------KGSSKHIAY  170 (260)
T ss_dssp             EEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGG------------TCCSSCHHH
T ss_pred             EEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhc------------CCCCCcHhH
Confidence            999999753322  221   235566765554444444332   234667776643211            123322233


Q ss_pred             EeeeccHHHHHHHHHHHcCC
Q 022947          190 GVTMLDVVRANTFVAEVLGL  209 (289)
Q Consensus       190 G~t~lds~R~~~~lA~~l~v  209 (289)
                      +.+......+-+.+|.+++-
T Consensus       171 ~asKaa~~~l~~~la~e~~~  190 (260)
T 3gem_A          171 CATKAGLESLTLSFAARFAP  190 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHCC
Confidence            33332233456677777753

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=97.56  E-value=0.00024  Score=61.88  Aligned_cols=114  Identities=18%  Similarity=0.208  Sum_probs=67.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeC-CCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV-VNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~-~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal------  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+ ++.  .....++....  .++..+. +-+|   +++.+      
T Consensus         4 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (246)
T 2uvd_A            4 GKVALVTGASRGIGRAIAIDLAKQGA--NVVVNYAGNEQKANEVVDEIKKLG--SDAIAVRADVANAEDVTNMVKQTVDV   79 (246)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999999997  8999998 442  11122232211  1222211 1122   22223      


Q ss_pred             -CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 022947          113 -TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       113 -~~aDiVIitag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~tN  164 (289)
                       ...|++|.+||......   .+   ....+..|+..    .+.+.+.+++.. .+.|+++|.
T Consensus        80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  141 (246)
T 2uvd_A           80 FGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQR-HGRIVNIAS  141 (246)
T ss_dssp             HSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECC
Confidence             37999999999753211   11   22355667655    555556565543 456666654

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=97.56  E-value=0.00035  Score=62.04  Aligned_cols=115  Identities=17%  Similarity=0.196  Sum_probs=67.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc----------h----hHHhhhhcccCCceEEEEe-cCCC---
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----------P----GVTADISHMDTNAVVRGFL-GQQQ---  107 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~----------~----g~~~DL~~~~~~~~v~~~~-~t~d---  107 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++.          .    ....++...  ..++..+. +-+|   
T Consensus        10 ~k~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~   85 (281)
T 3s55_A           10 GKTALITGGARGMGRSHAVALAEAGA--DIAICDRCENSDVVGYPLATADDLAETVALVEKT--GRRCISAKVDVKDRAA   85 (281)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCccccccccccccHHHHHHHHHHHHhc--CCeEEEEeCCCCCHHH
Confidence            45899999999999999999999997  8999998631          1    111112111  12222211 1112   


Q ss_pred             HHhhh-------CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHH----HHHhCCCcEEEEecCC
Q 022947          108 LEDAL-------TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEG----IAKCCPKAIVNLISNP  165 (289)
Q Consensus       108 ~~eal-------~~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~~~i~~~----i~~~~p~aiviv~tNP  165 (289)
                      .++.+       ...|++|.+||.....   ..+   -.+.+..|+.....+.+.    +.+. ..+.|+++|..
T Consensus        86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~  159 (281)
T 3s55_A           86 LESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKR-NYGRIVTVSSM  159 (281)
T ss_dssp             HHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG
T ss_pred             HHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEECCh
Confidence            22223       3899999999975321   122   233456676555444444    4443 35667776643

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=97.56  E-value=0.0003  Score=62.47  Aligned_cols=114  Identities=14%  Similarity=0.179  Sum_probs=67.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhh-------h
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------L  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------l  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+++.  .....++....  ..+..+. +-+|   .++.       +
T Consensus         4 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~   79 (264)
T 3tfo_A            4 DKVILITGASGGIGEGIARELGVAGA--KILLGARRQARIEAIATEIRDAG--GTALAQVLDVTDRHSVAAFAQAAVDTW   79 (264)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999997  8999998762  22223333221  1222211 1112   2222       3


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecC
Q 022947          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g---~~---r~d~~~~N~~i~----~~i~~~i~~~~p~aiviv~tN  164 (289)
                      ...|++|.+||......   .+   -...+..|+...    +.+.+.+++. ..+.|+++|.
T Consensus        80 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~IV~isS  140 (264)
T 3tfo_A           80 GRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQ-RSGQIINIGS  140 (264)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCeEEEEEcC
Confidence            47899999999753221   11   123455665544    4445555444 3566776654

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=97.55  E-value=0.00037  Score=60.82  Aligned_cols=155  Identities=14%  Similarity=0.095  Sum_probs=83.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeC-CCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh-----
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV-VNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-----  112 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~-~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal-----  112 (289)
                      +.++|.|+||+|.+|..++..|+..|.  +|++.|. +..  .....++....  .++..+. +-+|   .++.+     
T Consensus        12 ~~k~vlITGas~giG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~   87 (256)
T 3ezl_A           12 SQRIAYVTGGMGGIGTSICQRLHKDGF--RVVAGCGPNSPRRVKWLEDQKALG--FDFYASEGNVGDWDSTKQAFDKVKA   87 (256)
T ss_dssp             -CEEEEETTTTSHHHHHHHHHHHHTTE--EEEEEECTTCSSHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CeeEEEecCCCCHHHHHHHHHHHHH
Confidence            356899999999999999999999997  8888884 332  22222332221  1222111 1112   22222     


Q ss_pred             --CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHh
Q 022947          113 --TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKV  180 (289)
Q Consensus       113 --~~aDiVIitag~~~~~---g~~---r~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~  180 (289)
                        ...|++|.+||.....   ..+   -...+..|+..    .+.+.+.+.+.. .+.|+++|......           
T Consensus        88 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~-----------  155 (256)
T 3ezl_A           88 EVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERG-WGRIINISSVNGQK-----------  155 (256)
T ss_dssp             HTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCCCGGG-----------
T ss_pred             hcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEcchhhcc-----------
Confidence              3789999999975322   112   22355667655    455555555543 46677766544221           


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeE
Q 022947          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPV  218 (289)
Q Consensus       181 ~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V  218 (289)
                       +.+..-.++.+..-...+-+.+++.+.  +..|++.+
T Consensus       156 -~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~  190 (256)
T 3ezl_A          156 -GQFGQTNYSTAKAGIHGFTMSLAQEVA--TKGVTVNT  190 (256)
T ss_dssp             -SCSCCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEE
T ss_pred             -CCCCCcccHHHHHHHHHHHHHHHHHHH--HhCCEEEE
Confidence             233333333333223345566677663  33454443

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=97.55  E-value=0.00031  Score=62.65  Aligned_cols=116  Identities=14%  Similarity=0.111  Sum_probs=69.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhh-------h
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------L  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------l  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+++.  .....++....  ..+..+. +-+|   .++.       +
T Consensus        24 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~   99 (279)
T 3sju_A           24 PQTAFVTGVSSGIGLAVARTLAARGI--AVYGCARDAKNVSAAVDGLRAAG--HDVDGSSCDVTSTDEVHAAVAAAVERF   99 (279)
T ss_dssp             -CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999997  8999998762  22223333221  2222221 1122   2222       2


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHH-----hCCCcEEEEecCC
Q 022947          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAK-----CCPKAIVNLISNP  165 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~-----~~p~aiviv~tNP  165 (289)
                      ...|++|.+||......   .+   -.+.+..|+.....+++.+..     ....+.|+++|..
T Consensus       100 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS~  163 (279)
T 3sju_A          100 GPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIAST  163 (279)
T ss_dssp             CSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECCG
T ss_pred             CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECCh
Confidence            37899999999753211   11   233556777666555555433     1234667776643

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=97.55  E-value=0.00028  Score=64.27  Aligned_cols=66  Identities=23%  Similarity=0.405  Sum_probs=49.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      .|+||++||. |.+|+.+|..|+..|+  +|+.+|+++.  .+.++.....    ..   ..++.|+.+++|+||.+.
T Consensus         2 ~M~kIgfIGl-G~MG~~mA~~L~~~G~--~v~v~dr~~~--~~~~l~~~Ga----~~---a~s~~e~~~~~dvv~~~l   67 (300)
T 3obb_A            2 HMKQIAFIGL-GHMGAPMATNLLKAGY--LLNVFDLVQS--AVDGLVAAGA----SA---ARSARDAVQGADVVISML   67 (300)
T ss_dssp             -CCEEEEECC-STTHHHHHHHHHHTTC--EEEEECSSHH--HHHHHHHTTC----EE---CSSHHHHHTTCSEEEECC
T ss_pred             CcCEEEEeee-hHHHHHHHHHHHhCCC--eEEEEcCCHH--HHHHHHHcCC----EE---cCCHHHHHhcCCceeecC
Confidence            3569999998 9999999999999998  9999998752  2233333221    11   246788999999999985

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=97.55  E-value=0.00055  Score=58.90  Aligned_cols=102  Identities=16%  Similarity=0.147  Sum_probs=59.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCC---CHHhhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQ---QLEDAL-------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~---d~~eal-------  112 (289)
                      ++++.|+||+|.+|..++..|+..|.  +|++.|++..  .....++.... ..++..+. +-+   +.++.+       
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~   78 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGY--ALALGARSVDRLEKIAHELMQEQ-GVEVFYHHLDVSKAESVEEFSKKVLERF   78 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHCC-HHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc-CCeEEEEEeccCCHHHHHHHHHHHHHhc
Confidence            45799999999999999999999997  8999998762  22222332111 11222211 111   222233       


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHH
Q 022947          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGI  150 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i  150 (289)
                      ...|++|.+||......   .+   -...+..|+.....+.+.+
T Consensus        79 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~  122 (235)
T 3l77_A           79 GDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAF  122 (235)
T ss_dssp             SSCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             CCCCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            37899999999753221   12   1234556655444444443

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.55  E-value=0.00049  Score=60.97  Aligned_cols=115  Identities=16%  Similarity=0.160  Sum_probs=72.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--------------hhHHhhhhcccCCceEEEEe-cCCC---
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--------------PGVTADISHMDTNAVVRGFL-GQQQ---  107 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--------------~g~~~DL~~~~~~~~v~~~~-~t~d---  107 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|++..              .....++...  ..++..+. +-.|   
T Consensus        10 gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~   85 (287)
T 3pxx_A           10 DKVVLVTGGARGQGRSHAVKLAEEGA--DIILFDICHDIETNEYPLATSRDLEEAGLEVEKT--GRKAYTAEVDVRDRAA   85 (287)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHT--TSCEEEEECCTTCHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcccccccccccchhhhHHHHHHHHHHHhc--CCceEEEEccCCCHHH
Confidence            45899999999999999999999997  8999998720              1111122221  12222221 1122   


Q ss_pred             HHhhh-------CCCCEEEEcCCCCCCC-CC---chhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 022947          108 LEDAL-------TGMDIVIIPAGVPRKP-GM---TRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (289)
Q Consensus       108 ~~eal-------~~aDiVIitag~~~~~-g~---~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tN  164 (289)
                      .++.+       ...|++|.+||..... ..   .-.+.+..|+.....+.+.+..+- ..+.|+++|.
T Consensus        86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  154 (287)
T 3pxx_A           86 VSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGS  154 (287)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEecc
Confidence            22222       3899999999975322 11   224467788888888888877764 4567777665

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=97.54  E-value=0.00043  Score=60.00  Aligned_cols=109  Identities=14%  Similarity=0.206  Sum_probs=64.4

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEE-EEecCCCHH-------hhhCCCCEE
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLE-------DALTGMDIV  118 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~-~~~~t~d~~-------eal~~aDiV  118 (289)
                      +++.|+||+|.+|..++..|+..|.  +|+++|+++.. ...++. ..   .+. .... .+.+       +.+.+.|++
T Consensus         3 k~vlVTGas~giG~~~a~~l~~~G~--~V~~~~r~~~~-~~~~~~-~~---~~~~D~~~-~~~~~~~~~~~~~~g~id~l   74 (239)
T 2ekp_A            3 RKALVTGGSRGIGRAIAEALVARGY--RVAIASRNPEE-AAQSLG-AV---PLPTDLEK-DDPKGLVKRALEALGGLHVL   74 (239)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHH-HHHHHT-CE---EEECCTTT-SCHHHHHHHHHHHHTSCCEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHH-HHHhhC-cE---EEecCCch-HHHHHHHHHHHHHcCCCCEE
Confidence            5899999999999999999999997  89999998632 111121 00   000 0111 1222       234589999


Q ss_pred             EEcCCCCCCC---CCc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecC
Q 022947          119 IIPAGVPRKP---GMT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       119 Iitag~~~~~---g~~---r~d~~~~N~~i~----~~i~~~i~~~~p~aiviv~tN  164 (289)
                      |.+||.....   ..+   ..+.+..|+...    +.+.+.+++.. .+.|+++|.
T Consensus        75 v~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~g~iv~isS  129 (239)
T 2ekp_A           75 VHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAG-WGRVLFIGS  129 (239)
T ss_dssp             EECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECc
Confidence            9999875321   112   223455565544    44444444443 456666654

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=97.54  E-value=0.00078  Score=59.94  Aligned_cols=116  Identities=20%  Similarity=0.195  Sum_probs=68.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--------------hhH----HhhhhcccCCceEEEEe-cCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--------------PGV----TADISHMDTNAVVRGFL-GQQ  106 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--------------~g~----~~DL~~~~~~~~v~~~~-~t~  106 (289)
                      .+++.|+||+|.+|..++..|+..|.  .|+++|+++.              ...    ..++...  ..++..+. +-+
T Consensus        11 ~k~~lVTGas~gIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~   86 (286)
T 3uve_A           11 GKVAFVTGAARGQGRSHAVRLAQEGA--DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGH--NRRIVTAEVDVR   86 (286)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTT--TCCEEEEECCTT
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeccccccccccccccccCCHHHHHHHHHHHhhc--CCceEEEEcCCC
Confidence            45899999999999999999999997  8999998720              111    1111111  12233221 112


Q ss_pred             C---HHhhh-------CCCCEEEEcCCCCCCCC----Cc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecCC
Q 022947          107 Q---LEDAL-------TGMDIVIIPAGVPRKPG----MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       107 d---~~eal-------~~aDiVIitag~~~~~g----~~---r~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~tNP  165 (289)
                      |   .++.+       ...|++|.+||......    .+   -...+..|+..    .+.+.+.+.+....+.|+++|..
T Consensus        87 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~  166 (286)
T 3uve_A           87 DYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSV  166 (286)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECch
Confidence            2   22222       37999999999754322    12   12345566554    44455555555556777777653

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=97.53  E-value=0.0008  Score=59.03  Aligned_cols=115  Identities=11%  Similarity=0.083  Sum_probs=68.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal-------  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++....  .++..+. +-+|   .++.+       
T Consensus         6 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (257)
T 3imf_A            6 EKVVIITGGSSGMGKGMATRFAKEGA--RVVITGRTKEKLEEAKLEIEQFP--GQILTVQMDVRNTDDIQKMIEQIDEKF   81 (257)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCST--TCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999997  8999999862  22223333221  2222221 1112   22222       


Q ss_pred             CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHH----HHHHHHHHhCCCcEEEEecC
Q 022947          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVK----TLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       113 ~~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~~----~i~~~i~~~~p~aiviv~tN  164 (289)
                      ...|++|.+||.....   ..+   -...+..|+....    .+.+.+.+....+.|+++|.
T Consensus        82 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS  143 (257)
T 3imf_A           82 GRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVA  143 (257)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECc
Confidence            3789999999964321   111   1234566665444    44444444455677777764

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=97.53  E-value=0.00027  Score=61.79  Aligned_cols=114  Identities=17%  Similarity=0.187  Sum_probs=65.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchh-----HHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-----VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g-----~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIi  120 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++...     ...|+.+...   +...  -....+.+...|++|.
T Consensus        15 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~D~~~~~~---~~~~--~~~~~~~~g~id~lv~   87 (247)
T 1uzm_A           15 SRSVLVTGGNRGIGLAIAQRLAADGH--KVAVTHRGSGAPKGLFGVEVDVTDSDA---VDRA--FTAVEEHQGPVEVLVS   87 (247)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSSCCCTTSEEEECCTTCHHH---HHHH--HHHHHHHHSSCSEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHHHHHhcCeeccCCCHHH---HHHH--HHHHHHHcCCCCEEEE
Confidence            35899999999999999999999997  899999876211     1122222110   0000  0011122347899999


Q ss_pred             cCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecCCC
Q 022947          121 PAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPV  166 (289)
Q Consensus       121 tag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tNPv  166 (289)
                      +||.....   ..+   ..+.+..|+.....+.+.+.++   ...+.|+++|...
T Consensus        88 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~  142 (247)
T 1uzm_A           88 NAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVS  142 (247)
T ss_dssp             ECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC
T ss_pred             CCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEECCHh
Confidence            99975321   111   2345566665554444444322   2346677766543

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=97.53  E-value=0.00049  Score=60.37  Aligned_cols=114  Identities=12%  Similarity=0.109  Sum_probs=68.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhhC------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDALT------  113 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal~------  113 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++....  .++..+. +-+|   .++.++      
T Consensus         7 ~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~g   82 (252)
T 3h7a_A            7 NATVAVIGAGDYIGAEIAKKFAAEGF--TVFAGRRNGEKLAPLVAEIEAAG--GRIVARSLDARNEDEVTAFLNAADAHA   82 (252)
T ss_dssp             SCEEEEECCSSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECcCCCHHHHHHHHHHHHhhC
Confidence            45899999999999999999999998  8999999862  22233333221  2233221 1122   222333      


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 022947          114 GMDIVIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       114 ~aDiVIitag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      ..|++|.+||......   .+   -...+..|+..    .+.+.+.+++.. .+.|+++|.
T Consensus        83 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  142 (252)
T 3h7a_A           83 PLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHG-QGKIFFTGA  142 (252)
T ss_dssp             CEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEEE
T ss_pred             CceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECC
Confidence            6799999999754211   11   12345556544    455555555543 466666654

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=97.53  E-value=0.0018  Score=56.52  Aligned_cols=155  Identities=17%  Similarity=0.176  Sum_probs=83.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cC--CC---HHhh------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQ--QQ---LEDA------  111 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t--~d---~~ea------  111 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++.... ...+..+. +-  .|   .++.      
T Consensus        12 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~   88 (252)
T 3f1l_A           12 DRIILVTGASDGIGREAAMTYARYGA--TVILLGRNEEKLRQVASHINEET-GRQPQWFILDLLTCTSENCQQLAQRIAV   88 (252)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-SCCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc-CCCceEEEEecccCCHHHHHHHHHHHHH
Confidence            45899999999999999999999997  8999998762  22222232211 00111110 11  11   1222      


Q ss_pred             -hCCCCEEEEcCCCCCC--C--CCch---hhHHHhhHHHHHHHHHH----HHHhCCCcEEEEecCCCcccHHHHHHHHHH
Q 022947          112 -LTGMDIVIIPAGVPRK--P--GMTR---DDLFNINAGIVKTLCEG----IAKCCPKAIVNLISNPVNSTVPIAAEVFKK  179 (289)
Q Consensus       112 -l~~aDiVIitag~~~~--~--g~~r---~d~~~~N~~i~~~i~~~----i~~~~p~aiviv~tNPvd~~t~~~~~~~~~  179 (289)
                       +...|++|.+||....  +  ..+.   ...+..|+.....+.+.    +++. ..+.|+++|......          
T Consensus        89 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~-~~g~iv~isS~~~~~----------  157 (252)
T 3f1l_A           89 NYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKS-DAGSLVFTSSSVGRQ----------  157 (252)
T ss_dssp             HCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTS-SSCEEEEECCGGGTS----------
T ss_pred             hCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHC-CCCEEEEECChhhcc----------
Confidence             2378999999997321  2  1222   23456676555444444    4433 456666665433211          


Q ss_pred             hCCCCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          180 VGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       180 ~~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                        +.+..-.++.+..-...+-+.+|++++  +. |++.++
T Consensus       158 --~~~~~~~Y~asK~a~~~l~~~la~e~~--~~-irvn~v  192 (252)
T 3f1l_A          158 --GRANWGAYAASKFATEGMMQVLADEYQ--QR-LRVNCI  192 (252)
T ss_dssp             --CCTTCHHHHHHHHHHHHHHHHHHHHTT--TT-CEEEEE
T ss_pred             --CCCCCchhHHHHHHHHHHHHHHHHHhc--CC-cEEEEE
Confidence              222222233332223345667788875  23 554443

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=97.53  E-value=0.0003  Score=61.01  Aligned_cols=75  Identities=21%  Similarity=0.231  Sum_probs=49.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCC-Cc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhhC-----
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDALT-----  113 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~-~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal~-----  113 (289)
                      .++|.|+||+|++|..++..|+..|.  +|+++|++ +.  .....++...  ..++..+. +-.|   +++.++     
T Consensus         7 ~k~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (258)
T 3afn_B            7 GKRVLITGSSQGIGLATARLFARAGA--KVGLHGRKAPANIDETIASMRAD--GGDAAFFAADLATSEACQQLVDEFVAK   82 (258)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCCTTHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEECCCchhhHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999999997  89999997 42  1122223221  11222221 1112   333343     


Q ss_pred             --CCCEEEEcCCC
Q 022947          114 --GMDIVIIPAGV  124 (289)
Q Consensus       114 --~aDiVIitag~  124 (289)
                        +.|+||++||.
T Consensus        83 ~g~id~vi~~Ag~   95 (258)
T 3afn_B           83 FGGIDVLINNAGG   95 (258)
T ss_dssp             HSSCSEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence              89999999986

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=97.53  E-value=0.00066  Score=60.33  Aligned_cols=156  Identities=17%  Similarity=0.094  Sum_probs=86.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccC-CceEEEEe-cCCC---HHhhh------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFL-GQQQ---LEDAL------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~-~~~v~~~~-~t~d---~~eal------  112 (289)
                      .+++.|+||+|.+|.+++..|+..|.  +|+++|+++  ......++..... ...+..+. +-+|   .++.+      
T Consensus        11 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   88 (281)
T 3svt_A           11 DRTYLVTGGGSGIGKGVAAGLVAAGA--SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAW   88 (281)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999999997  899999876  2222333433211 11333221 1122   22222      


Q ss_pred             -CCCCEEEEcCCCCCCCC----Cc---hhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecCCCcccHHHHHHHHHHhC
Q 022947          113 -TGMDIVIIPAGVPRKPG----MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (289)
Q Consensus       113 -~~aDiVIitag~~~~~g----~~---r~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tNPvd~~t~~~~~~~~~~~  181 (289)
                       ...|++|.+||.....+    .+   -.+.+..|+.....+++.+.++   ...+.|+++|....            ..
T Consensus        89 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~------------~~  156 (281)
T 3svt_A           89 HGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAA------------SN  156 (281)
T ss_dssp             HSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHH------------HS
T ss_pred             cCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHH------------cC
Confidence             36799999999632221    11   1335666776555554444332   34567777654211            01


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeee
Q 022947          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVP  217 (289)
Q Consensus       182 ~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~  217 (289)
                      +.+..-.++.+..-...+-+.+|++++  +..|++.
T Consensus       157 ~~~~~~~Y~asK~a~~~l~~~la~e~~--~~gi~vn  190 (281)
T 3svt_A          157 THRWFGAYGVTKSAVDHLMQLAADELG--ASWVRVN  190 (281)
T ss_dssp             CCTTCTHHHHHHHHHHHHHHHHHHHHG--GGTEEEE
T ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhh--hcCeEEE
Confidence            233333334433333446667777774  3344443

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=97.53  E-value=7.1e-05  Score=65.89  Aligned_cols=92  Identities=15%  Similarity=0.184  Sum_probs=58.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCC-CccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g-~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      |||+|||+ |.+|+.++..|+..| +  +|.++|+++..  ...+....   .+...   .++.+++ ++|+||++.. +
T Consensus         1 m~i~iiG~-G~mG~~~a~~l~~~g~~--~v~~~~r~~~~--~~~~~~~~---g~~~~---~~~~~~~-~~D~vi~~v~-~   67 (263)
T 1yqg_A            1 MNVYFLGG-GNMAAAVAGGLVKQGGY--RIYIANRGAEK--RERLEKEL---GVETS---ATLPELH-SDDVLILAVK-P   67 (263)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSC--EEEEECSSHHH--HHHHHHHT---CCEEE---SSCCCCC-TTSEEEECSC-H
T ss_pred             CEEEEECc-hHHHHHHHHHHHHCCCC--eEEEECCCHHH--HHHHHHhc---CCEEe---CCHHHHh-cCCEEEEEeC-c
Confidence            58999998 999999999998888 5  89999987521  11222210   12221   2445677 9999999853 1


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcc
Q 022947          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS  168 (289)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~  168 (289)
                                     ..+.++++.+.. . +.+|+.++|.+..
T Consensus        68 ---------------~~~~~v~~~l~~-~-~~ivv~~~~g~~~   93 (263)
T 1yqg_A           68 ---------------QDMEAACKNIRT-N-GALVLSVAAGLSV   93 (263)
T ss_dssp             ---------------HHHHHHHTTCCC-T-TCEEEECCTTCCH
T ss_pred             ---------------hhHHHHHHHhcc-C-CCEEEEecCCCCH
Confidence                           123444444443 2 6666666676654

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=97.53  E-value=0.00034  Score=62.12  Aligned_cols=114  Identities=19%  Similarity=0.227  Sum_probs=65.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-c--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal------  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|... .  .....++....  ..+..+. +-+|   .++.+      
T Consensus        28 ~k~vlVTGas~gIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~v~~~~~~~~~~  103 (269)
T 4dmm_A           28 DRIALVTGASRGIGRAIALELAAAGA--KVAVNYASSAGAADEVVAAIAAAG--GEAFAVKADVSQESEVEALFAAVIER  103 (269)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            45789999999999999999999997  899998854 1  22222232221  1222211 1122   22222      


Q ss_pred             -CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecC
Q 022947          113 -TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       113 -~~aDiVIitag~~~~~g---~~---r~d~~~~N~~i~----~~i~~~i~~~~p~aiviv~tN  164 (289)
                       ...|++|.+||......   .+   -...+..|+...    +.+.+.+.+.. .+.|+++|.
T Consensus       104 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS  165 (269)
T 4dmm_A          104 WGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQR-SGRIINIAS  165 (269)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECc
Confidence             37899999999754321   11   123455665544    44444444443 456666653

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=97.53  E-value=0.00019  Score=62.81  Aligned_cols=114  Identities=17%  Similarity=0.241  Sum_probs=67.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCC---CHHhhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQ---QLEDAL-------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~---d~~eal-------  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++..     .+..+. +-+   +.++.+       
T Consensus         9 ~k~vlITGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (261)
T 3n74_A            9 GKVALITGAGSGFGEGMAKRFAKGGA--KVVIVDRDKAGAERVAGEIGD-----AALAVAADISKEADVDAAVEAALSKF   81 (261)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCT-----TEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhCC-----ceEEEEecCCCHHHHHHHHHHHHHhc
Confidence            35899999999999999999999997  8999998762  111222211     111111 111   222223       


Q ss_pred             CCCCEEEEcCCCCCCCC----Cc---hhhHHHhhHHH----HHHHHHHHHHhC---CCcEEEEecCCC
Q 022947          113 TGMDIVIIPAGVPRKPG----MT---RDDLFNINAGI----VKTLCEGIAKCC---PKAIVNLISNPV  166 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g----~~---r~d~~~~N~~i----~~~i~~~i~~~~---p~aiviv~tNPv  166 (289)
                      ...|++|.+||....++    .+   ....+..|+..    .+.+.+.+.+..   ..+.|++++...
T Consensus        82 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~  149 (261)
T 3n74_A           82 GKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTG  149 (261)
T ss_dssp             SCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTT
T ss_pred             CCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchh
Confidence            37899999999754222    11   12244556443    555555555542   255677666543

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=97.53  E-value=0.00017  Score=64.49  Aligned_cols=116  Identities=15%  Similarity=0.105  Sum_probs=67.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal-------  112 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|++..  .....++.... ..++..+. +-+|   +.+++       
T Consensus        26 ~k~vlITGasggiG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~  102 (302)
T 1w6u_A           26 GKVAFITGGGTGLGKGMTTLLSSLGA--QCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDMVQNTVSELIKVA  102 (302)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCceEEEEeCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999997  8999998762  11222232210 11222221 1112   22223       


Q ss_pred             CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHH----hCCCcEEEEecC
Q 022947          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAK----CCPKAIVNLISN  164 (289)
Q Consensus       113 ~~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~----~~p~aiviv~tN  164 (289)
                      ...|+||++||.....   ..+   ....+..|+.....+.+.+.+    ....+.++++|.
T Consensus       103 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS  164 (302)
T 1w6u_A          103 GHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITT  164 (302)
T ss_dssp             CSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcc
Confidence            3559999999964321   111   233556676655555444433    334566776654

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=97.52  E-value=0.0015  Score=57.30  Aligned_cols=116  Identities=16%  Similarity=0.186  Sum_probs=67.8

Q ss_pred             CCEEEEEcCCCc-cHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh------
Q 022947           46 GFKVAVLGAAGG-IGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~-VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal------  112 (289)
                      .+++.|+||+|+ +|..++..|+..|.  +|+++|++..  .....++.... ..++..+. +-+|   .++.+      
T Consensus        22 ~k~vlITGasg~GIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~   98 (266)
T 3o38_A           22 GKVVLVTAAAGTGIGSTTARRALLEGA--DVVISDYHERRLGETRDQLADLG-LGRVEAVVCDVTSTEAVDALITQTVEK   98 (266)
T ss_dssp             TCEEEESSCSSSSHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTC-SSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhcC-CCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence            468999999874 99999999999997  8999999762  22223332221 12333221 1122   22222      


Q ss_pred             -CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecC
Q 022947          113 -TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       113 -~~aDiVIitag~~~~~g---~~---r~d~~~~N~~i~----~~i~~~i~~~~p~aiviv~tN  164 (289)
                       ...|++|.+||......   .+   -...+..|+...    +.+.+.+++....+.|+++|.
T Consensus        99 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS  161 (266)
T 3o38_A           99 AGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNAS  161 (266)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECC
T ss_pred             hCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence             36799999999753321   12   123455565444    444444544445677777664

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=97.52  E-value=5e-05  Score=63.88  Aligned_cols=110  Identities=14%  Similarity=0.161  Sum_probs=67.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--hHHhhhhcccCCceEEEEecCCCHHhhhC---CCCEEEEc
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLGQQQLEDALT---GMDIVIIP  121 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g~~~DL~~~~~~~~v~~~~~t~d~~eal~---~aDiVIit  121 (289)
                      |+|.|+||+|++|..++..|+..    +|+++|+++..  ....++.......++   ....++++.++   +.|+||++
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~----~V~~~~r~~~~~~~~~~~~~~~~~~~D~---~~~~~~~~~~~~~~~id~vi~~   73 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH----DLLLSGRRAGALAELAREVGARALPADL---ADELEAKALLEEAGPLDLLVHA   73 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS----EEEEECSCHHHHHHHHHHHTCEECCCCT---TSHHHHHHHHHHHCSEEEEEEC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC----CEEEEECCHHHHHHHHHhccCcEEEeeC---CCHHHHHHHHHhcCCCCEEEEC
Confidence            47999999999999999988776    89999987521  111111100000111   11123344455   89999999


Q ss_pred             CCCCCCC------CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 022947          122 AGVPRKP------GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       122 ag~~~~~------g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      ||.....      ..+....+..|+.....+.+.+.+. +.+.++++|.
T Consensus        74 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~sS  121 (207)
T 2yut_A           74 VGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQ-KGARAVFFGA  121 (207)
T ss_dssp             CCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEE-EEEEEEEECC
T ss_pred             CCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhc-CCcEEEEEcC
Confidence            9875321      1223456778888888888877432 3456666664

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=97.51  E-value=0.00011  Score=64.38  Aligned_cols=155  Identities=19%  Similarity=0.222  Sum_probs=83.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEE-EEecCCCHHhhh-------CCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVR-GFLGQQQLEDAL-------TGM  115 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~-~~~~t~d~~eal-------~~a  115 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+++.  +....++....  ..+. ..+...+.++.+       ...
T Consensus         9 gk~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~Dv~d~~~v~~~~~~~~~~~g~i   84 (248)
T 3op4_A            9 GKVALVTGASRGIGKAIAELLAERGA--KVIGTATSESGAQAISDYLGDNG--KGMALNVTNPESIEAVLKAITDEFGGV   84 (248)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHGGGE--EEEECCTTCHHHHHHHHHHHHHHHCCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcccc--eEEEEeCCCHHHHHHHHHHHHHHcCCC
Confidence            45899999999999999999999998  8999998762  11122222110  0011 011111222222       389


Q ss_pred             CEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHH----HHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCC
Q 022947          116 DIVIIPAGVPRKPG---MT---RDDLFNINAGIVKT----LCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (289)
Q Consensus       116 DiVIitag~~~~~g---~~---r~d~~~~N~~i~~~----i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~  185 (289)
                      |++|.+||......   .+   -...+..|+.....    ..+.+.+. ..+.|+++|.....            .+.+.
T Consensus        85 D~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~-~~g~iv~isS~~~~------------~~~~~  151 (248)
T 3op4_A           85 DILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKK-RQGRIINVGSVVGT------------MGNAG  151 (248)
T ss_dssp             SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHHHH------------HCCTT
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEEcchhhc------------CCCCC
Confidence            99999999754321   11   22345666554444    44444443 34666666532110            12333


Q ss_pred             CcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          186 KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       186 ~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                      .-.++.+..--..+-+.+|++++  +..|++.++
T Consensus       152 ~~~Y~asK~a~~~l~~~la~e~~--~~gi~vn~v  183 (248)
T 3op4_A          152 QANYAAAKAGVIGFTKSMAREVA--SRGVTVNTV  183 (248)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHH--HhCeEEEEE
Confidence            33334433223345666777763  344554433

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=97.50  E-value=0.00095  Score=58.53  Aligned_cols=116  Identities=16%  Similarity=0.125  Sum_probs=67.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch-hH--HhhhhcccCCceEEEEe-cCCC---HHhhh------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GV--TADISHMDTNAVVRGFL-GQQQ---LEDAL------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~-g~--~~DL~~~~~~~~v~~~~-~t~d---~~eal------  112 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++.. ..  ..++.... ...+..+. +-+|   +++.+      
T Consensus         4 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~   80 (260)
T 1x1t_A            4 GKVAVVTGSTSGIGLGIATALAAQGA--DIVLNGFGDAAEIEKVRAGLAAQH-GVKVLYDGADLSKGEAVRGLVDNAVRQ   80 (260)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEECCSCHHHHHHHHHHHHHHH-TSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHhcc-CCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence            35899999999999999999999997  89999987622 11  12222110 11222211 1112   22223      


Q ss_pred             -CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecCC
Q 022947          113 -TGMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       113 -~~aDiVIitag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tNP  165 (289)
                       ...|++|.+||......   .+   ....+..|+.    ..+.+.+.+++.. .+.|+++|..
T Consensus        81 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~  143 (260)
T 1x1t_A           81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQG-FGRIINIASA  143 (260)
T ss_dssp             HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCG
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEECcH
Confidence             37999999999753211   11   2334566665    4445555555443 4666666643

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=97.49  E-value=0.00039  Score=61.65  Aligned_cols=110  Identities=15%  Similarity=0.075  Sum_probs=64.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEe-cCCC---HHhh-------hCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------LTG  114 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------l~~  114 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|++....  .++...    .+..+. +-+|   .++.       +..
T Consensus        16 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~--~~~~~~----~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   87 (266)
T 3p19_A           16 KKLVVITGASSGIGEAIARRFSEEGH--PLLLLARRVERL--KALNLP----NTLCAQVDVTDKYTFDTAITRAEKIYGP   87 (266)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCHHHH--HTTCCT----TEEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHH--HHhhcC----CceEEEecCCCHHHHHHHHHHHHHHCCC
Confidence            45799999999999999999999997  899999875211  111110    111110 1111   2222       347


Q ss_pred             CCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHH----HHHHHHHhCCCcEEEEecC
Q 022947          115 MDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKT----LCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       115 aDiVIitag~~~~~---g~~---r~d~~~~N~~i~~~----i~~~i~~~~p~aiviv~tN  164 (289)
                      .|++|.+||.....   ..+   -.+.+..|+.....    +.+.+++.. .+.|+++|.
T Consensus        88 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~-~g~IV~isS  146 (266)
T 3p19_A           88 ADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARN-CGTIINISS  146 (266)
T ss_dssp             EEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEcC
Confidence            89999999975322   112   22345667655444    555555443 456666654

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=97.49  E-value=0.00062  Score=60.18  Aligned_cols=114  Identities=18%  Similarity=0.193  Sum_probs=66.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-c--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal------  112 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|++++++. .  +....++....  .++..+. +-+|   ..+.+      
T Consensus        29 ~k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~  104 (271)
T 4iin_A           29 GKNVLITGASKGIGAEIAKTLASMGL--KVWINYRSNAEVADALKNELEEKG--YKAAVIKFDAASESDFIEAIQTIVQS  104 (271)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHh
Confidence            45899999999999999999999998  899999865 1  11122222221  2222221 1112   22222      


Q ss_pred             -CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecC
Q 022947          113 -TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       113 -~~aDiVIitag~~~~~g---~~---r~d~~~~N~~i~----~~i~~~i~~~~p~aiviv~tN  164 (289)
                       ...|++|.+||......   .+   -.+.+..|+...    +.+.+.+++.. .+.|+++|.
T Consensus       105 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS  166 (271)
T 4iin_A          105 DGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSR-FGSVVNVAS  166 (271)
T ss_dssp             HSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcC-CCEEEEEec
Confidence             38999999999754321   11   223455565544    44455554443 456666653

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=97.49  E-value=0.00039  Score=61.22  Aligned_cols=114  Identities=16%  Similarity=0.166  Sum_probs=66.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCCH---Hh-------hh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL---ED-------AL  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~---~e-------al  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|++..  .....++....  .++..+. +-+|.   ++       .+
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (262)
T 1zem_A            7 GKVCLVTGAGGNIGLATALRLAEEGT--AIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRDF   82 (262)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence            45899999999999999999999997  8999998762  22222332211  1222211 11222   11       23


Q ss_pred             CCCCEEEEcCCCC-CC-C--CCc---hhhHHHhhHHHHHHHH----HHHHHhCCCcEEEEecC
Q 022947          113 TGMDIVIIPAGVP-RK-P--GMT---RDDLFNINAGIVKTLC----EGIAKCCPKAIVNLISN  164 (289)
Q Consensus       113 ~~aDiVIitag~~-~~-~--g~~---r~d~~~~N~~i~~~i~----~~i~~~~p~aiviv~tN  164 (289)
                      ...|++|.+||.. .. +  ..+   -...+..|+.....++    +.+.+. ..+.|+++|.
T Consensus        83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS  144 (262)
T 1zem_A           83 GKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQ-NYGRIVNTAS  144 (262)
T ss_dssp             SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcc
Confidence            4899999999975 21 1  111   1234556655444444    444433 3456666654

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=97.49  E-value=0.00055  Score=59.76  Aligned_cols=113  Identities=17%  Similarity=0.180  Sum_probs=66.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhh-------h
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------L  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------l  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|++..  .....++....  .++..+. +-+|   .++.       +
T Consensus         7 ~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~   82 (247)
T 2jah_A            7 GKVALITGASSGIGEATARALAAEGA--AVAIAARRVEKLRALGDELTAAG--AKVHVLELDVADRQGVDAAVASTVEAL   82 (247)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999997  8999998752  22222332211  1222221 1122   2222       2


Q ss_pred             CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHH----HHHHHHHhCCCcEEEEecC
Q 022947          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKT----LCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       113 ~~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~~~----i~~~i~~~~p~aiviv~tN  164 (289)
                      ...|++|.+||.....   ..+   ....+..|+.....    +.+.+.+..  +.|+++|.
T Consensus        83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS  142 (247)
T 2jah_A           83 GGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK--GTVVQMSS  142 (247)
T ss_dssp             SCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECC
T ss_pred             CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC--CEEEEEcc
Confidence            4899999999975321   112   12345666554444    444444433  67777664

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=97.49  E-value=0.00026  Score=63.02  Aligned_cols=155  Identities=10%  Similarity=0.113  Sum_probs=84.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCC---CHHhhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQ---QLEDAL-------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~---d~~eal-------  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+++.  .....++....  .++..+. +-+   +.++.+       
T Consensus        26 gk~~lVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~  101 (271)
T 4ibo_A           26 GRTALVTGSSRGLGRAMAEGLAVAGA--RILINGTDPSRVAQTVQEFRNVG--HDAEAVAFDVTSESEIIEAFARLDEQG  101 (271)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHC
Confidence            45899999999999999999999997  8999998762  22223333221  1222211 111   222223       


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHH----HHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCC
Q 022947          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTL----CEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g---~~---r~d~~~~N~~i~~~i----~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~  182 (289)
                      ...|++|.+||......   .+   -...+..|+.....+    .+.+.+.. .+.|+++|......            +
T Consensus       102 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iV~isS~~~~~------------~  168 (271)
T 4ibo_A          102 IDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRG-YGKIVNIGSLTSEL------------A  168 (271)
T ss_dssp             CCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS------------B
T ss_pred             CCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEccHHhCC------------C
Confidence            37999999999753221   12   223456665544444    55554443 46666665432211            2


Q ss_pred             CCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       183 ~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                      .+..-.++.+......+-+.+|.+++  +..|++.++
T Consensus       169 ~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  203 (271)
T 4ibo_A          169 RATVAPYTVAKGGIKMLTRAMAAEWA--QYGIQANAI  203 (271)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHh--hhCeEEEEE
Confidence            22222233332223345666777763  344554433

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=97.47  E-value=0.0003  Score=61.65  Aligned_cols=110  Identities=15%  Similarity=0.200  Sum_probs=64.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCC---CHHhhh-------C
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQ---QLEDAL-------T  113 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~---d~~eal-------~  113 (289)
                      +++.|+||+|.+|..++..|+..|.  +|++.|+++.  .....++.     ..+..+. +-+   +.++.+       .
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   73 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQERLQELKDELG-----DNLYIAQLDVRNRAAIEEMLASLPAEWC   73 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHC-----TTEEEEECCTTCHHHHHHHHHTSCTTTC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhc-----CceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            3789999999999999999999997  8999998752  11112221     1111111 111   222222       3


Q ss_pred             CCCEEEEcCCCCC--CC--CCc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 022947          114 GMDIVIIPAGVPR--KP--GMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       114 ~aDiVIitag~~~--~~--g~~---r~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      ..|++|.+||...  .+  ..+   -...+..|+..    .+.+.+.+++.. .+.|+++|.
T Consensus        74 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~-~g~iv~isS  134 (248)
T 3asu_A           74 NIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERN-HGHIINIGS  134 (248)
T ss_dssp             CCCEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             CCCEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEEcc
Confidence            7899999999752  11  111   22345666554    444555554443 456666664

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=97.47  E-value=0.00056  Score=60.88  Aligned_cols=116  Identities=16%  Similarity=0.139  Sum_probs=64.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal-------  112 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++.... ...+..+. +-+|   .++.+       
T Consensus        28 ~k~vlITGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~v~~~~~~~~~~~  104 (286)
T 1xu9_A           28 GKKVIVTGASKGIGREMAYHLAKMGA--HVVVTARSKETLQKVVSHCLELG-AASAHYIAGTMEDMTFAEQFVAQAGKLM  104 (286)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHT-CSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999997  8999998762  11112222111 11222221 1122   22222       


Q ss_pred             CCCCEEEEc-CCCCCCC--CCch---hhHHHhhHHHHHHHHHHHHHhC--CCcEEEEecC
Q 022947          113 TGMDIVIIP-AGVPRKP--GMTR---DDLFNINAGIVKTLCEGIAKCC--PKAIVNLISN  164 (289)
Q Consensus       113 ~~aDiVIit-ag~~~~~--g~~r---~d~~~~N~~i~~~i~~~i~~~~--p~aiviv~tN  164 (289)
                      .+.|++|++ +|....+  ..+.   ...+..|+.....+.+.+...-  ..+.|+++|.
T Consensus       105 g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~iv~isS  164 (286)
T 1xu9_A          105 GGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSS  164 (286)
T ss_dssp             TSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             CCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCCCEEEEECC
Confidence            379999999 6764322  1111   2345566554444444332210  1355666654

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=97.46  E-value=0.00016  Score=63.69  Aligned_cols=67  Identities=16%  Similarity=0.259  Sum_probs=47.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      ++|||+|||+ |.+|..++..|...|.  +|.++|+++...  .++.... .  +.   ..+++++.++++|+||++.
T Consensus         2 ~~m~i~iiG~-G~mG~~~a~~l~~~g~--~v~~~~~~~~~~--~~~~~~~-g--~~---~~~~~~~~~~~~D~Vi~~v   68 (259)
T 2ahr_A            2 NAMKIGIIGV-GKMASAIIKGLKQTPH--ELIISGSSLERS--KEIAEQL-A--LP---YAMSHQDLIDQVDLVILGI   68 (259)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHTTSSC--EEEEECSSHHHH--HHHHHHH-T--CC---BCSSHHHHHHTCSEEEECS
T ss_pred             CccEEEEECC-CHHHHHHHHHHHhCCC--eEEEECCCHHHH--HHHHHHc-C--CE---eeCCHHHHHhcCCEEEEEe
Confidence            4679999998 9999999999988885  899999875211  1122110 0  11   1246778889999999986

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=97.46  E-value=0.00049  Score=59.89  Aligned_cols=108  Identities=13%  Similarity=0.097  Sum_probs=64.1

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEE-e--CCCc--hhHHhhhhcccCCceEEEEecCCCHHhh-------hCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-D--VVNT--PGVTADISHMDTNAVVRGFLGQQQLEDA-------LTG  114 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~Lv-D--~~~~--~g~~~DL~~~~~~~~v~~~~~t~d~~ea-------l~~  114 (289)
                      +++.|+||+|.+|..++..|+..|.  +|+++ |  +++.  .....++ .   ..++.   ...+.++.       +..
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~r~~~~~~~~~~~~-~---~~~~~---~~~~v~~~~~~~~~~~g~   72 (244)
T 1zmo_A            2 VIALVTHARHFAGPAAVEALTQDGY--TVVCHDASFADAAERQRFESEN-P---GTIAL---AEQKPERLVDATLQHGEA   72 (244)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHS-T---TEEEC---CCCCGGGHHHHHGGGSSC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCcCCHHHHHHHHHHh-C---CCccc---CHHHHHHHHHHHHHHcCC
Confidence            4799999999999999999999997  89999 5  7652  1112222 1   11111   11222222       347


Q ss_pred             CCEEEEcCCCCCC----C--CCc---hhhHHHhhHHHHHH----HHHHHHHhCCCcEEEEecC
Q 022947          115 MDIVIIPAGVPRK----P--GMT---RDDLFNINAGIVKT----LCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       115 aDiVIitag~~~~----~--g~~---r~d~~~~N~~i~~~----i~~~i~~~~p~aiviv~tN  164 (289)
                      .|++|.+||....    +  ..+   ....+..|+.....    +.+.+++. ..+.|+++|.
T Consensus        73 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~g~iv~isS  134 (244)
T 1zmo_A           73 IDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAA-GGASVIFITS  134 (244)
T ss_dssp             EEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred             CCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEECC
Confidence            8999999997543    1  111   22355666654444    44444443 3566777664

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=97.45  E-value=0.00046  Score=60.65  Aligned_cols=114  Identities=17%  Similarity=0.201  Sum_probs=71.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCCH---H-------hhh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL---E-------DAL  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~---~-------eal  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+++.  .....++.     .++..+. +-+|.   +       +.+
T Consensus         8 gk~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (255)
T 4eso_A            8 GKKAIVIGGTHGMGLATVRRLVEGGA--EVLLTGRNESNIARIREEFG-----PRVHALRSDIADLNEIAVLGAAAGQTL   80 (255)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CcceEEEccCCCHHHHHHHHHHHHHHh
Confidence            45899999999999999999999997  8999998762  11111221     1111111 11121   1       223


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 022947          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPV  166 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPv  166 (289)
                      ...|++|.+||......   .+   -...+..|+.....+.+.+..+- ..+.|+++|...
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~  141 (255)
T 4eso_A           81 GAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVA  141 (255)
T ss_dssp             SSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGG
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChh
Confidence            47899999999754221   11   23456778777777777776543 356777776543

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=97.45  E-value=0.00036  Score=64.39  Aligned_cols=88  Identities=19%  Similarity=0.219  Sum_probs=57.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      .+||+|||+ |.+|.+++..|...|+  +|+++|.+.....  +..... .  +..   + ++.+++++||+||++..  
T Consensus        16 ~~~I~IIG~-G~mG~alA~~L~~~G~--~V~~~~~~~~~~~--~~a~~~-G--~~~---~-~~~e~~~~aDvVilavp--   81 (338)
T 1np3_A           16 GKKVAIIGY-GSQGHAHACNLKDSGV--DVTVGLRSGSATV--AKAEAH-G--LKV---A-DVKTAVAAADVVMILTP--   81 (338)
T ss_dssp             TSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECCTTCHHH--HHHHHT-T--CEE---E-CHHHHHHTCSEEEECSC--
T ss_pred             CCEEEEECc-hHHHHHHHHHHHHCcC--EEEEEECChHHHH--HHHHHC-C--CEE---c-cHHHHHhcCCEEEEeCC--
Confidence            468999998 9999999999999887  8999998753211  111111 1  121   1 46688999999999852  


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHH-HHHHhC-CCcEEEE
Q 022947          126 RKPGMTRDDLFNINAGIVKTLCE-GIAKCC-PKAIVNL  161 (289)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~-~i~~~~-p~aiviv  161 (289)
                                    .....++++ .+..+. |+++|+.
T Consensus        82 --------------~~~~~~v~~~~i~~~l~~~~ivi~  105 (338)
T 1np3_A           82 --------------DEFQGRLYKEEIEPNLKKGATLAF  105 (338)
T ss_dssp             --------------HHHHHHHHHHHTGGGCCTTCEEEE
T ss_pred             --------------cHHHHHHHHHHHHhhCCCCCEEEE
Confidence                          111245555 666554 5666654

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=97.44  E-value=0.00045  Score=61.57  Aligned_cols=115  Identities=17%  Similarity=0.263  Sum_probs=66.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal-------  112 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|+++++++.  .....++....  .++..+. +-+|   +++++       
T Consensus        44 ~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~~  119 (285)
T 2c07_A           44 NKVALVTGAGRGIGREIAKMLAKSVS--HVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSKKEEISEVINKILTEH  119 (285)
T ss_dssp             SCEEEEESTTSHHHHHHHHHHTTTSS--EEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHHHhcC--CceeEEECCCCCHHHHHHHHHHHHHhc
Confidence            35899999999999999999999887  8999887652  22222332211  1222221 1122   22222       


Q ss_pred             CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecCC
Q 022947          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       113 ~~aDiVIitag~~~~~---g~~---r~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~tNP  165 (289)
                      .+.|+||.+||.....   ..+   ..+.+..|+..    .+.+.+.+.+.. .+.|+++|..
T Consensus       120 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~~iv~isS~  181 (285)
T 2c07_A          120 KNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNR-YGRIINISSI  181 (285)
T ss_dssp             SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT-CEEEEEECCT
T ss_pred             CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CCEEEEECCh
Confidence            4789999999975321   111   23455666655    444444444443 4566666643

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=97.44  E-value=0.00028  Score=63.51  Aligned_cols=117  Identities=12%  Similarity=0.121  Sum_probs=70.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhC-----C-CccEEEEEeCCCchhHHhhhhc-ccC---C-------ceEEEEecCCCH
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKIN-----P-LVSVLHLYDVVNTPGVTADISH-MDT---N-------AVVRGFLGQQQL  108 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~-----g-~~~eI~LvD~~~~~g~~~DL~~-~~~---~-------~~v~~~~~t~d~  108 (289)
                      +|||+|||+ |.+|+.++..|+..     | +  +|.++|+ +  .....+.. ...   .       .++..   +++.
T Consensus         8 ~m~I~iiG~-G~mG~~~a~~L~~~~~~~~g~~--~V~~~~r-~--~~~~~l~~~~g~~~~~~~~~~~~~~~~~---~~~~   78 (317)
T 2qyt_A            8 PIKIAVFGL-GGVGGYYGAMLALRAAATDGLL--EVSWIAR-G--AHLEAIRAAGGLRVVTPSRDFLARPTCV---TDNP   78 (317)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHHHHHTTSSE--EEEEECC-H--HHHHHHHHHTSEEEECSSCEEEECCSEE---ESCH
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCccccCCCC--CEEEEEc-H--HHHHHHHhcCCeEEEeCCCCeEEecceE---ecCc
Confidence            479999998 99999999999887     7 6  9999997 3  11222222 110   0       01111   1343


Q ss_pred             HhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCc
Q 022947          109 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR  187 (289)
Q Consensus       109 ~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~k  187 (289)
                       ++++++|+||++....    .            +.++++.+..+- |+.+|+.++|..+..     +.+++  .+++.+
T Consensus        79 -~~~~~~D~vil~vk~~----~------------~~~v~~~i~~~l~~~~~iv~~~nG~~~~-----~~l~~--~l~~~~  134 (317)
T 2qyt_A           79 -AEVGTVDYILFCTKDY----D------------MERGVAEIRPMIGQNTKILPLLNGADIA-----ERMRT--YLPDTV  134 (317)
T ss_dssp             -HHHCCEEEEEECCSSS----C------------HHHHHHHHGGGEEEEEEEEECSCSSSHH-----HHHTT--TSCTTT
T ss_pred             -cccCCCCEEEEecCcc----c------------HHHHHHHHHhhcCCCCEEEEccCCCCcH-----HHHHH--HCCCCc
Confidence             5689999999986322    1            244556666553 677777778876542     23333  355555


Q ss_pred             EE-Eeeecc
Q 022947          188 LL-GVTMLD  195 (289)
Q Consensus       188 vi-G~t~ld  195 (289)
                      ++ |++..+
T Consensus       135 v~~g~~~~~  143 (317)
T 2qyt_A          135 VWKGCVYIS  143 (317)
T ss_dssp             BCEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            54 444433

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=97.44  E-value=0.00062  Score=61.89  Aligned_cols=116  Identities=16%  Similarity=0.204  Sum_probs=68.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc----------hhH----HhhhhcccCCceEEEEe-cCCC---
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----------PGV----TADISHMDTNAVVRGFL-GQQQ---  107 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~----------~g~----~~DL~~~~~~~~v~~~~-~t~d---  107 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|++..          ...    ..++...  ..++..+. +-+|   
T Consensus        46 gk~~lVTGas~GIG~aia~~la~~G~--~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~  121 (317)
T 3oec_A           46 GKVAFITGAARGQGRTHAVRLAQDGA--DIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQ--GRRIIARQADVRDLAS  121 (317)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--eEEEEecccccccccccccCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHH
Confidence            45789999999999999999999998  9999998620          111    1111111  12222221 1112   


Q ss_pred             HHhhh-------CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecCC
Q 022947          108 LEDAL-------TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       108 ~~eal-------~~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~----~~i~~~i~~~~p~aiviv~tNP  165 (289)
                      .++.+       ...|++|.+||.....   ..+   -...+..|+...    +.+.+.+.+....+.|+++|..
T Consensus       122 v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~  196 (317)
T 3oec_A          122 LQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSST  196 (317)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCG
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcH
Confidence            22222       3789999999975321   112   223456665544    4455555555556777777654

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=97.43  E-value=0.0013  Score=57.59  Aligned_cols=115  Identities=14%  Similarity=0.182  Sum_probs=66.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--hH--HhhhhcccCCceEEEEe-cCCC---HHhhh------
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GV--TADISHMDTNAVVRGFL-GQQQ---LEDAL------  112 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g~--~~DL~~~~~~~~v~~~~-~t~d---~~eal------  112 (289)
                      +++.|+||+|.+|..++..|+..|.  +|+++|+++..  ..  ..++...  ..++..+. +-+|   +++.+      
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~   78 (258)
T 3a28_C            3 KVAMVTGGAQGIGRGISEKLAADGF--DIAVADLPQQEEQAAETIKLIEAA--DQKAVFVGLDVTDKANFDSAIDEAAEK   78 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEECGGGHHHHHHHHHHHHTT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            4799999999999999999999997  89999987532  11  1222221  12222221 1122   22223      


Q ss_pred             -CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecCC
Q 022947          113 -TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       113 -~~aDiVIitag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~tNP  165 (289)
                       ...|++|.+||......   .+   -.+.+..|+..    .+.+.+.+++....+.|+++|..
T Consensus        79 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~  142 (258)
T 3a28_C           79 LGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASI  142 (258)
T ss_dssp             HTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCG
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcc
Confidence             37999999999753211   11   22345566554    44445555444433666666543

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=97.42  E-value=0.00071  Score=60.19  Aligned_cols=115  Identities=22%  Similarity=0.145  Sum_probs=71.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch---hHHhhhhcccCCceEEEEe-cCCC---HHh-------h
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMDTNAVVRGFL-GQQQ---LED-------A  111 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~---g~~~DL~~~~~~~~v~~~~-~t~d---~~e-------a  111 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|++...   ....++....  .++..+. +-+|   .++       .
T Consensus        29 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~  104 (283)
T 1g0o_A           29 GKVALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAVKI  104 (283)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999999997  89999987621   1122232211  1222211 1112   112       2


Q ss_pred             hCCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecC
Q 022947          112 LTGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISN  164 (289)
Q Consensus       112 l~~aDiVIitag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~-~p~aiviv~tN  164 (289)
                      +...|++|.+||......   .+   ....+..|+.....+++.+.++ ...+.|+++|.
T Consensus       105 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  164 (283)
T 1g0o_A          105 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGS  164 (283)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECC
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEec
Confidence            347899999999753211   11   2345778888777777777766 24566776654

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=97.42  E-value=0.00045  Score=60.51  Aligned_cols=119  Identities=14%  Similarity=0.087  Sum_probs=70.2

Q ss_pred             CCCCEEEEEcCC--CccHHHHHHHHHhCCCccEEEEEeCCC-chhHHhhhhcccCCceEEE--EecCCCHHhhh------
Q 022947           44 SPGFKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRG--FLGQQQLEDAL------  112 (289)
Q Consensus        44 ~~~~KI~IIGaa--G~VGs~la~~L~~~g~~~eI~LvD~~~-~~g~~~DL~~~~~~~~v~~--~~~t~d~~eal------  112 (289)
                      .+.++|.|+||+  |.+|..++..|+..|.  +|+++|+++ ......++...........  .+...+.++.+      
T Consensus        12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   89 (271)
T 3ek2_A           12 LDGKRILLTGLLSNRSIAYGIAKACKREGA--ELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTH   89 (271)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHHcCC--CEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence            345699999998  8999999999999997  899999875 2222222221110111111  11111222222      


Q ss_pred             -CCCCEEEEcCCCCCC-----C--C-Cc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 022947          113 -TGMDIVIIPAGVPRK-----P--G-MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (289)
Q Consensus       113 -~~aDiVIitag~~~~-----~--g-~~---r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tN  164 (289)
                       ...|++|.+||....     +  . .+   -...+..|+.....+.+.+...- +.+.|+++|.
T Consensus        90 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS  154 (271)
T 3ek2_A           90 WDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSY  154 (271)
T ss_dssp             CSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             cCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEec
Confidence             367999999997532     1  1 22   23356677776777777666543 3556766664

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.41  E-value=0.00029  Score=62.35  Aligned_cols=115  Identities=17%  Similarity=0.161  Sum_probs=71.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--hHHhhhhcccCCceEEEEe-cCCC---HHhhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g~~~DL~~~~~~~~v~~~~-~t~d---~~eal-------  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++..  ....++.     .++..+. +-+|   .++.+       
T Consensus         6 ~k~vlITGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~~   78 (263)
T 2a4k_A            6 GKTILVTGAASGIGRAALDLFAREGA--SLVAVDREERLLAEAVAALE-----AEAIAVVADVSDPKAVEAVFAEALEEF   78 (263)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCC-----SSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhc-----CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999997  89999987621  1111221     1122111 1112   22222       


Q ss_pred             CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCc
Q 022947          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVN  167 (289)
Q Consensus       113 ~~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd  167 (289)
                      ...|++|.+||.....   ..+   -...+..|+.....+.+.+.++- ..+.|+++|....
T Consensus        79 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~  140 (263)
T 2a4k_A           79 GRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAG  140 (263)
T ss_dssp             SCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTT
T ss_pred             CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchh
Confidence            3579999999875321   111   23456778877777777766653 2467777765543

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.41  E-value=0.00098  Score=58.95  Aligned_cols=115  Identities=13%  Similarity=0.121  Sum_probs=65.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh-------C
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------T  113 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal-------~  113 (289)
                      +++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++.... ...+..+. +-+|   +++.+       .
T Consensus        22 k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   98 (267)
T 1vl8_A           22 RVALVTGGSRGLGFGIAQGLAEAGC--SVVVASRNLEEASEAAQKLTEKY-GVETMAFRCDVSNYEEVKKLLEAVKEKFG   98 (267)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999999997  8999998762  22222231110 11222111 1122   22222       3


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 022947          114 GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (289)
Q Consensus       114 ~aDiVIitag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tN  164 (289)
                      ..|++|.+||......   .+   ....+..|+.....+++.+..+   ...+.|+++|.
T Consensus        99 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS  158 (267)
T 1vl8_A           99 KLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGS  158 (267)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECC
T ss_pred             CCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECC
Confidence            7899999999753221   11   1234566766555554444322   23456666654

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=97.41  E-value=0.0024  Score=56.84  Aligned_cols=115  Identities=17%  Similarity=0.180  Sum_probs=67.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC---chhHHhhhhcccCCceEEEEe-cCCC---HHhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------  111 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~---~~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------  111 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|++.   ......++.... ...+..+. +-+|   .++.       
T Consensus        25 ~k~~lVTGas~GIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~  101 (281)
T 3v2h_A           25 TKTAVITGSTSGIGLAIARTLAKAGA--NIVLNGFGAPDEIRTVTDEVAGLS-SGTVLHHPADMTKPSEIADMMAMVADR  101 (281)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEECCCCHHHHHHHHHHHHTTC-SSCEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHhhcc-CCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            35799999999999999999999997  899999854   122222232211 12232221 1112   2222       


Q ss_pred             hCCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHH----HHHHHhCCCcEEEEecC
Q 022947          112 LTGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLC----EGIAKCCPKAIVNLISN  164 (289)
Q Consensus       112 l~~aDiVIitag~~~~~g---~~---r~d~~~~N~~i~~~i~----~~i~~~~p~aiviv~tN  164 (289)
                      +...|++|.+||......   .+   -...+..|+.....+.    +.+.+.. .+.|+++|.
T Consensus       102 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS  163 (281)
T 3v2h_A          102 FGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKG-WGRIINIAS  163 (281)
T ss_dssp             TSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEECC
Confidence            238899999999753321   12   2234566655444444    4445443 456666654

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=97.41  E-value=0.00054  Score=62.72  Aligned_cols=35  Identities=20%  Similarity=0.096  Sum_probs=31.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEe-CCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYD-VVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD-~~~   82 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++| +++
T Consensus        46 ~k~~lVTGas~GIG~aia~~La~~G~--~Vv~~~~r~~   81 (328)
T 2qhx_A           46 VPVALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRSA   81 (328)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCCH
Confidence            35799999999999999999999997  899999 765

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=97.41  E-value=0.00033  Score=63.03  Aligned_cols=181  Identities=15%  Similarity=0.120  Sum_probs=89.7

Q ss_pred             hcCCCccccccccccccccccccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccC
Q 022947           18 HLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT   95 (289)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~   95 (289)
                      |.|---.-+-.+.-||.+|.-+|+    .+.+.|+||++-+|..+|..|+..|.  .|++.|+++  .+..+.++.... 
T Consensus         5 ~~~~s~~~~~~~n~~~~~Ms~rL~----gKvalVTGas~GIG~aiA~~la~~Ga--~V~i~~r~~~~l~~~~~~~g~~~-   77 (273)
T 4fgs_A            5 HHHSSGVDLGTENLYFQSMTQRLN----AKIAVITGATSGIGLAAAKRFVAEGA--RVFITGRRKDVLDAAIAEIGGGA-   77 (273)
T ss_dssp             --------------------CTTT----TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCTTC-
T ss_pred             cccccCCCccccccchhhhcchhC----CCEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCCCe-
Confidence            334444455556778888987766    34678889999999999999999997  999999986  222233332111 


Q ss_pred             CceEEE-EecCCC-------HHhhhCCCCEEEEcCCCCCC-C--CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEE
Q 022947           96 NAVVRG-FLGQQQ-------LEDALTGMDIVIIPAGVPRK-P--GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVN  160 (289)
Q Consensus        96 ~~~v~~-~~~t~d-------~~eal~~aDiVIitag~~~~-~--g~~---r~d~~~~N~~i~~~i~~~i~~~~-p~aivi  160 (289)
                       ..+.. .+...+       ..+.+-..|++|..||.... +  ..+   ..+.+..|+...-.+++....+- ..+.|+
T Consensus        78 -~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~II  156 (273)
T 4fgs_A           78 -VGIQADSANLAELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVV  156 (273)
T ss_dssp             -EEEECCTTCHHHHHHHHHHHHHHHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEE
T ss_pred             -EEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEE
Confidence             00110 000011       12334678999999987432 2  112   33456677766655555554432 345666


Q ss_pred             EecCCCcccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEEc
Q 022947          161 LISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (289)
Q Consensus       161 v~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~G  220 (289)
                      +++.-...            .+.|..-.++.+.-.-.-|-+.+|.+++  +..|++-.+-
T Consensus       157 nisS~~~~------------~~~~~~~~Y~asKaav~~ltr~lA~Ela--~~gIrVN~V~  202 (273)
T 4fgs_A          157 LTGSTAGS------------TGTPAFSVYAASKAALRSFARNWILDLK--DRGIRINTLS  202 (273)
T ss_dssp             EECCGGGG------------SCCTTCHHHHHHHHHHHHHHHHHHHHTT--TSCEEEEEEE
T ss_pred             EEeehhhc------------cCCCCchHHHHHHHHHHHHHHHHHHHhc--ccCeEEEEEe
Confidence            66532211            1233222223322222346677888874  5666655443

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=97.41  E-value=0.00043  Score=63.01  Aligned_cols=115  Identities=17%  Similarity=0.172  Sum_probs=66.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCC----------C--chhHHhhhhcccCCceEEEEe-cCCC---HH
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV----------N--TPGVTADISHMDTNAVVRGFL-GQQQ---LE  109 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~----------~--~~g~~~DL~~~~~~~~v~~~~-~t~d---~~  109 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|++          .  ......++....  .++..+. +-+|   .+
T Consensus        27 gk~vlVTGas~GIG~aia~~la~~G~--~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~  102 (322)
T 3qlj_A           27 GRVVIVTGAGGGIGRAHALAFAAEGA--RVVVNDIGVGLDGSPASGGSAAQSVVDEITAAG--GEAVADGSNVADWDQAA  102 (322)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTT--CEEEEECCCTTSHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCcccccccccccHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHH
Confidence            45789999999999999999999997  99999986          2  112222333221  2222221 1122   22


Q ss_pred             hhh-------CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHH----HHHhC-----CCcEEEEecC
Q 022947          110 DAL-------TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEG----IAKCC-----PKAIVNLISN  164 (289)
Q Consensus       110 eal-------~~aDiVIitag~~~~~g---~~---r~d~~~~N~~i~~~i~~~----i~~~~-----p~aiviv~tN  164 (289)
                      +.+       ...|++|.+||......   .+   -...+..|+.....+++.    +.+..     +.+.|+++|.
T Consensus       103 ~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS  179 (322)
T 3qlj_A          103 GLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSS  179 (322)
T ss_dssp             HHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECC
T ss_pred             HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcC
Confidence            222       37899999999754221   11   223566676644444443    33221     1367777654

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=97.40  E-value=0.00095  Score=58.45  Aligned_cols=118  Identities=14%  Similarity=0.111  Sum_probs=66.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCC-ceEEEEe-cCCC---HHhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTN-AVVRGFL-GQQQ---LEDA-------  111 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~-~~v~~~~-~t~d---~~ea-------  111 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++...... ..+..+. +-+|   .++.       
T Consensus         7 ~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (250)
T 3nyw_A            7 KGLAIITGASQGIGAVIAAGLATDGY--RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQK   84 (250)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHHTC--EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHh
Confidence            45899999999999999999999997  8999999862  2222233221100 1222111 1122   2222       


Q ss_pred             hCCCCEEEEcCCCCCCC--CCc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecCCC
Q 022947          112 LTGMDIVIIPAGVPRKP--GMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPV  166 (289)
Q Consensus       112 l~~aDiVIitag~~~~~--g~~---r~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~tNPv  166 (289)
                      +...|++|.+||.....  ..+   -...+..|+..    .+.+.+.+++. ..+.|+++|...
T Consensus        85 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~  147 (250)
T 3nyw_A           85 YGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQ-KNGYIFNVASRA  147 (250)
T ss_dssp             HCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC--
T ss_pred             cCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEEccHH
Confidence            24789999999974322  111   12345556554    44444444444 356677766543

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=97.40  E-value=0.00037  Score=62.34  Aligned_cols=115  Identities=18%  Similarity=0.183  Sum_probs=66.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhh-------h
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------L  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------l  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++...  ..++..+. +-+|   .++.       +
T Consensus         8 gk~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (280)
T 3tox_A            8 GKIAIVTGASSGIGRAAALLFAREGA--KVVVTARNGNALAELTDEIAGG--GGEAAALAGDVGDEALHEALVELAVRRF   83 (280)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHTTT--TCCEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999997  8999998762  2222233221  12222211 1112   2222       2


Q ss_pred             CCCCEEEEcCCCCCCCC----Cc---hhhHHHhhHHHHHHH----HHHHHHhCCCcEEEEecCC
Q 022947          113 TGMDIVIIPAGVPRKPG----MT---RDDLFNINAGIVKTL----CEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g----~~---r~d~~~~N~~i~~~i----~~~i~~~~p~aiviv~tNP  165 (289)
                      ...|++|.+||.....+    .+   -...+..|+.....+    .+.+.+. ..+.|+++|..
T Consensus        84 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~  146 (280)
T 3tox_A           84 GGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAAL-GGGSLTFTSSF  146 (280)
T ss_dssp             SCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCS
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEEcCh
Confidence            47999999999653211    11   123455665544444    4444443 35667766643

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=97.40  E-value=0.0028  Score=58.60  Aligned_cols=120  Identities=19%  Similarity=0.241  Sum_probs=73.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch---------hHHhhhhcccCCceEEEEe-cCCC---HHhh
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---------GVTADISHMDTNAVVRGFL-GQQQ---LEDA  111 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~---------g~~~DL~~~~~~~~v~~~~-~t~d---~~ea  111 (289)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|++...         ....++....  .++..+. +-.|   .++.
T Consensus        44 ~gk~vlVTGas~GIG~aia~~La~~Ga--~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~  119 (346)
T 3kvo_A           44 AGCTVFITGASRGIGKAIALKAAKDGA--NIVIAAKTAQPHPKLLGTIYTAAEEIEAVG--GKALPCIVDVRDEQQISAA  119 (346)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESCCSCCSSSCCCHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHHCCC--EEEEEECChhhhhhhHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHH
Confidence            346899999999999999999999997  89999987621         1122222221  2222221 1112   2222


Q ss_pred             h-------CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecCCCcc
Q 022947          112 L-------TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNS  168 (289)
Q Consensus       112 l-------~~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tNPvd~  168 (289)
                      +       ...|++|.+||.....   ..+   -...+..|+.....+.+.+..+   ...+.||++|.+...
T Consensus       120 ~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~~  192 (346)
T 3kvo_A          120 VEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNL  192 (346)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCCC
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHHc
Confidence            2       3899999999974322   111   2345677777666666555433   245778888766543

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=97.39  E-value=0.00064  Score=59.20  Aligned_cols=155  Identities=17%  Similarity=0.177  Sum_probs=84.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-c--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal------  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|.+. .  +....++....  .++..+. +-+|   .++.+      
T Consensus         4 ~k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~   79 (246)
T 3osu_A            4 TKSALVTGASRGIGRSIALQLAEEGY--NVAVNYAGSKEKAEAVVEEIKAKG--VDSFAIQANVADADEVKAMIKEVVSQ   79 (246)
T ss_dssp             SCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            35799999999999999999999997  899988755 1  22222333221  1222211 1112   22223      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHH----HHHhCCCcEEEEecCCCcccHHHHHHHHHHhC
Q 022947          113 -TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEG----IAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (289)
Q Consensus       113 -~~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~~~i~~~----i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~  181 (289)
                       ...|++|.+||.....   ..+   -...+..|+.....+.+.    +.+. ..+.|+++|.-..          .  .
T Consensus        80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~----------~--~  146 (246)
T 3osu_A           80 FGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQ-RSGAIINLSSVVG----------A--V  146 (246)
T ss_dssp             HSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHHH----------H--H
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEEcchhh----------c--C
Confidence             3789999999975321   112   123566676554444444    4544 3456666653110          0  1


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       182 ~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                      +.|..-.++.+......+-+.++++++  +..|++.++
T Consensus       147 ~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~vn~v  182 (246)
T 3osu_A          147 GNPGQANYVATKAGVIGLTKSAARELA--SRGITVNAV  182 (246)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHhc--ccCeEEEEE
Confidence            334333344443333445666777763  344554433

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=97.39  E-value=0.00082  Score=59.58  Aligned_cols=112  Identities=13%  Similarity=0.133  Sum_probs=65.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--hH----HhhhhcccCCceEEEEecCCCHHhhhCCCCEEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GV----TADISHMDTNAVVRGFLGQQQLEDALTGMDIVI  119 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g~----~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVI  119 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++..  +.    ..|+.+..   .+...  .....+.+...|++|
T Consensus        14 ~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~Dv~~~~---~v~~~--~~~~~~~~g~iD~lv   86 (269)
T 3vtz_A           14 DKVAIVTGGSSGIGLAVVDALVRYGA--KVVSVSLDEKSDVNVSDHFKIDVTNEE---EVKEA--VEKTTKKYGRIDILV   86 (269)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCC--CTTSSEEEECCTTCHH---HHHHH--HHHHHHHHSCCCEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCchhccCceeEEEecCCCHH---HHHHH--HHHHHHHcCCCCEEE
Confidence            46899999999999999999999997  89999987621  10    11222111   00000  001123345899999


Q ss_pred             EcCCCCCCCC---Cc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecCC
Q 022947          120 IPAGVPRKPG---MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       120 itag~~~~~g---~~---r~d~~~~N~~i~----~~i~~~i~~~~p~aiviv~tNP  165 (289)
                      .+||......   .+   -...+..|+...    +.+.+.+.+. ..+.|+++|..
T Consensus        87 ~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~  141 (269)
T 3vtz_A           87 NNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAI-GHGSIINIASV  141 (269)
T ss_dssp             ECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG
T ss_pred             ECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEECch
Confidence            9999753221   11   123455665544    4444444443 35666666543

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=97.38  E-value=0.0016  Score=57.34  Aligned_cols=117  Identities=13%  Similarity=0.076  Sum_probs=69.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHh-------hh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LED-------AL  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~e-------al  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  .|++.|+++.  .....++.......++..+. +-+|   .++       .+
T Consensus         8 ~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (265)
T 3lf2_A            8 EAVAVVTGGSSGIGLATVELLLEAGA--AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTL   85 (265)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999997  8999998762  22223333211111122211 1122   111       23


Q ss_pred             CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 022947          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (289)
Q Consensus       113 ~~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tN  164 (289)
                      ...|++|.+||.....   ..+   -...+..|+.....+++.+..+   ...+.|+++|.
T Consensus        86 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS  146 (265)
T 3lf2_A           86 GCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNS  146 (265)
T ss_dssp             CSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEE
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECC
Confidence            4789999999974321   122   2335667776666655555433   23566766654

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=97.38  E-value=0.00083  Score=58.49  Aligned_cols=116  Identities=16%  Similarity=0.147  Sum_probs=66.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhh-------h
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------L  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------l  112 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|++..  .....++.... ...+..+. +-.|   +++.       +
T Consensus        14 ~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   90 (265)
T 1h5q_A           14 NKTIIVTGGNRGIGLAFTRAVAAAGA--NVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCDVSNTDIVTKTIQQIDADL   90 (265)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCTTHHHHHHHHHHHH-TCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCcchhhHHHHHHHHHhc-CCeeEEEEeeCCCHHHHHHHHHHHHHhc
Confidence            35899999999999999999999997  8999998652  11122222110 11222211 1112   2222       2


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHH----HHHhCCCcEEEEecC
Q 022947          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEG----IAKCCPKAIVNLISN  164 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g---~~---r~d~~~~N~~i~~~i~~~----i~~~~p~aiviv~tN  164 (289)
                      ...|++|.+||......   .+   -...+..|+.....+.+.    +.+....+.|+++|.
T Consensus        91 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS  152 (265)
T 1h5q_A           91 GPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSS  152 (265)
T ss_dssp             CSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             CCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCC
Confidence            35899999998753211   11   123456666555444444    433343466666654

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.38  E-value=0.00067  Score=59.78  Aligned_cols=114  Identities=14%  Similarity=0.049  Sum_probs=66.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal-------  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+++.  .....++....  .++..+. +-+|   .++.+       
T Consensus        11 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   86 (264)
T 3ucx_A           11 DKVVVISGVGPALGTTLARRCAEQGA--DLVLAARTVERLEDVAKQVTDTG--RRALSVGTDITDDAQVAHLVDETMKAY   86 (264)
T ss_dssp             TCEEEEESCCTTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CcEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999998  8999999762  22223333221  1222211 1112   22222       


Q ss_pred             CCCCEEEEcCCCCCCCC----Cc---hhhHHHhhHHHHHH----HHHHHHHhCCCcEEEEecCC
Q 022947          113 TGMDIVIIPAGVPRKPG----MT---RDDLFNINAGIVKT----LCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g----~~---r~d~~~~N~~i~~~----i~~~i~~~~p~aiviv~tNP  165 (289)
                      ...|++|.+||.....+    .+   -.+.+..|+.....    +.+.+.+.  .+.|+++|.-
T Consensus        87 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~g~iv~isS~  148 (264)
T 3ucx_A           87 GRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEES--KGAVVNVNSM  148 (264)
T ss_dssp             SCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHH--TCEEEEECCG
T ss_pred             CCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCEEEEECcc
Confidence            37899999998742211    11   12345556554444    44444443  2667766543

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=97.37  E-value=0.0007  Score=60.02  Aligned_cols=116  Identities=23%  Similarity=0.269  Sum_probs=69.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC---------------chhHHhhhhcccCCceEEEEe-cCCC--
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---------------TPGVTADISHMDTNAVVRGFL-GQQQ--  107 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~---------------~~g~~~DL~~~~~~~~v~~~~-~t~d--  107 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|++.               ......++...  ..++..+. +-+|  
T Consensus        11 ~k~~lVTGas~GIG~a~a~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~   86 (277)
T 3tsc_A           11 GRVAFITGAARGQGRAHAVRMAAEGA--DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAA--NRRIVAAVVDTRDFD   86 (277)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHT--TCCEEEEECCTTCHH
T ss_pred             CCEEEEECCccHHHHHHHHHHHHcCC--EEEEEeccccccccccccccCHHHHHHHHHHHHhc--CCeEEEEECCCCCHH
Confidence            45899999999999999999999998  899999841               11111122221  12222211 1122  


Q ss_pred             -HHh-------hhCCCCEEEEcCCCCCCCC---Cch---hhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecCC
Q 022947          108 -LED-------ALTGMDIVIIPAGVPRKPG---MTR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       108 -~~e-------al~~aDiVIitag~~~~~g---~~r---~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tNP  165 (289)
                       .++       .+...|++|.+||......   .+.   ...+..|+.    ..+.+.+.+.+..+.+.|+++|.-
T Consensus        87 ~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~  162 (277)
T 3tsc_A           87 RLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSA  162 (277)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccH
Confidence             212       2346899999999754321   121   234556654    455556666666656777777653

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=97.37  E-value=0.00063  Score=59.90  Aligned_cols=155  Identities=17%  Similarity=0.164  Sum_probs=82.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEE-eCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~Lv-D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal------  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|++. ++++.  .....++....  .++..+. +-+|   .++.+      
T Consensus         4 ~k~vlVTGas~gIG~aia~~l~~~G~--~vv~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (258)
T 3oid_A            4 NKCALVTGSSRGVGKAAAIRLAENGY--NIVINYARSKKAALETAEEIEKLG--VKVLVVKANVGQPAKIKEMFQQIDET   79 (258)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEecCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            45799999999999999999999997  88886 65542  22222333221  2222221 1112   22222      


Q ss_pred             -CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHH----HHHhCCCcEEEEecCCCcccHHHHHHHHHHhC
Q 022947          113 -TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEG----IAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (289)
Q Consensus       113 -~~aDiVIitag~~~~~g---~~---r~d~~~~N~~i~~~i~~~----i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~  181 (289)
                       ...|++|.+||......   .+   -...+..|+.....+++.    +++. ..+.|+++|.....            .
T Consensus        80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~-~~g~iv~isS~~~~------------~  146 (258)
T 3oid_A           80 FGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKN-GGGHIVSISSLGSI------------R  146 (258)
T ss_dssp             HSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT-TCEEEEEEEEGGGT------------S
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEECchhhC------------C
Confidence             36699999998643211   11   123456676555444444    4433 35666666543211            1


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       182 ~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                      +.+..-.++.+..-...+-+.+|.+++  +..|++.++
T Consensus       147 ~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~vn~v  182 (258)
T 3oid_A          147 YLENYTTVGVSKAALEALTRYLAVELS--PKQIIVNAV  182 (258)
T ss_dssp             BCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEEEE
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHh--hcCcEEEEE
Confidence            222222233333223445667777763  445554433

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.37  E-value=0.00028  Score=62.73  Aligned_cols=115  Identities=13%  Similarity=0.173  Sum_probs=66.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccC-CceEEEEe-cCCC---HHhhh------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT-NAVVRGFL-GQQQ---LEDAL------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~-~~~v~~~~-~t~d---~~eal------  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++..... ...+..+. +-+|   .++.+      
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (280)
T 1xkq_A            6 NKTVIITGSSNGIGRTTAILFAQEGA--NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   83 (280)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHh
Confidence            45899999999999999999999997  8999998762  212222322110 01222221 1122   22222      


Q ss_pred             -CCCCEEEEcCCCCCCCC-------Cc---hhhHHHhhHHHHHHHHHH----HHHhCCCcEEEEecC
Q 022947          113 -TGMDIVIIPAGVPRKPG-------MT---RDDLFNINAGIVKTLCEG----IAKCCPKAIVNLISN  164 (289)
Q Consensus       113 -~~aDiVIitag~~~~~g-------~~---r~d~~~~N~~i~~~i~~~----i~~~~p~aiviv~tN  164 (289)
                       ...|++|.+||......       .+   ..+.+..|+.....+++.    +.+..  +.|+++|.
T Consensus        84 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS  148 (280)
T 1xkq_A           84 FGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK--GEIVNVSS  148 (280)
T ss_dssp             HSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC--CcEEEecC
Confidence             37899999999753211       11   123455665554444444    43333  66776654

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=97.37  E-value=0.00028  Score=63.15  Aligned_cols=111  Identities=17%  Similarity=0.083  Sum_probs=71.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchh--HHhhhhcccCCceEEEEe-cCCC---HHhhhC---CCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFL-GQQQ---LEDALT---GMD  116 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g--~~~DL~~~~~~~~v~~~~-~t~d---~~eal~---~aD  116 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++...  ...++     ..++..+. +-+|   .++.++   ..|
T Consensus        16 gk~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~d~~~v~~~~~~~~~iD   88 (291)
T 3rd5_A           16 QRTVVITGANSGLGAVTARELARRGA--TVIMAVRDTRKGEAAARTM-----AGQVEVRELDLQDLSSVRRFADGVSGAD   88 (291)
T ss_dssp             TCEEEEECCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHTTS-----SSEEEEEECCTTCHHHHHHHHHTCCCEE
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHh-----cCCeeEEEcCCCCHHHHHHHHHhcCCCC
Confidence            45899999999999999999999997  899999876221  11122     12222221 1122   333333   679


Q ss_pred             EEEEcCCCCCCC----CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 022947          117 IVIIPAGVPRKP----GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       117 iVIitag~~~~~----g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      ++|++||.....    .+.-...+..|+.....+.+.+...-.. .|+++|.
T Consensus        89 ~lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-riv~isS  139 (291)
T 3rd5_A           89 VLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTD-RVVTVSS  139 (291)
T ss_dssp             EEEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEE-EEEEECC
T ss_pred             EEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-heeEeec
Confidence            999999975322    1223456788988888888888766544 4555544

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=97.36  E-value=0.0033  Score=55.91  Aligned_cols=35  Identities=20%  Similarity=0.171  Sum_probs=31.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|++.
T Consensus        23 ~k~~lVTGas~gIG~aia~~L~~~G~--~V~~~~r~~   57 (288)
T 2x9g_A           23 APAAVVTGAAKRIGRAIAVKLHQTGY--RVVIHYHNS   57 (288)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHHTC--EEEEEESSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--eEEEEeCCc
Confidence            35899999999999999999999997  899999876

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.36  E-value=0.0005  Score=61.92  Aligned_cols=115  Identities=17%  Similarity=0.259  Sum_probs=66.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccC-CceEEEEe-cCCC---HHhhh------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT-NAVVRGFL-GQQQ---LEDAL------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~-~~~v~~~~-~t~d---~~eal------  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++..... ...+..+. +-+|   .++.+      
T Consensus        26 ~k~vlVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  103 (297)
T 1xhl_A           26 GKSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK  103 (297)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHh
Confidence            45899999999999999999999997  8999998762  222222322110 00222221 1112   22223      


Q ss_pred             -CCCCEEEEcCCCCCCCC-----Cc---hhhHHHhhHHHHHHHH----HHHHHhCCCcEEEEecC
Q 022947          113 -TGMDIVIIPAGVPRKPG-----MT---RDDLFNINAGIVKTLC----EGIAKCCPKAIVNLISN  164 (289)
Q Consensus       113 -~~aDiVIitag~~~~~g-----~~---r~d~~~~N~~i~~~i~----~~i~~~~p~aiviv~tN  164 (289)
                       ...|++|.+||......     .+   ....+..|+.....++    +.+.+..  +.|+++|.
T Consensus       104 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--g~IV~isS  166 (297)
T 1xhl_A          104 FGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK--GEIVNVSS  166 (297)
T ss_dssp             HSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEECC
T ss_pred             cCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC--CEEEEEcC
Confidence             37899999999753211     11   2234556655444444    4443332  67777664

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=97.35  E-value=0.0007  Score=59.54  Aligned_cols=149  Identities=14%  Similarity=0.090  Sum_probs=83.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEE-eCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~Lv-D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal------  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|++. +.++.  .....++....  ..+..+. +-+|   .++.+      
T Consensus         8 ~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (259)
T 3edm_A            8 NRTIVVAGAGRDIGRACAIRFAQEGA--NVVLTYNGAAEGAATAVAEIEKLG--RSALAIKADLTNAAEVEAAISAAADK   83 (259)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECSSCHHHHHHHHHHHTTT--SCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999999997  88888 44441  11222333221  1122111 1112   22223      


Q ss_pred             -CCCCEEEEcCCCCC--CC--CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCC
Q 022947          113 -TGMDIVIIPAGVPR--KP--GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (289)
Q Consensus       113 -~~aDiVIitag~~~--~~--g~~---r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~~  183 (289)
                       ...|++|.+||...  .+  ..+   -...+..|+.....+.+.+...- +.+.|+++|.....           ..+.
T Consensus        84 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~-----------~~~~  152 (259)
T 3edm_A           84 FGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGR-----------DGGG  152 (259)
T ss_dssp             HCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHH-----------HCCS
T ss_pred             hCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhc-----------cCCC
Confidence             37899999998642  11  112   23456778887777777776653 34566666542210           0123


Q ss_pred             CCCcEEEeeeccHHHHHHHHHHHcCC
Q 022947          184 DPKRLLGVTMLDVVRANTFVAEVLGL  209 (289)
Q Consensus       184 ~~~kviG~t~lds~R~~~~lA~~l~v  209 (289)
                      +..-.++.+..--..+-+.+|.+++-
T Consensus       153 ~~~~~Y~asKaa~~~l~~~la~e~~~  178 (259)
T 3edm_A          153 PGALAYATSKGAVMTFTRGLAKEVGP  178 (259)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHCC
Confidence            33333333333334456677888753

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=97.34  E-value=0.0011  Score=58.82  Aligned_cols=153  Identities=14%  Similarity=0.100  Sum_probs=85.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-c--hhHHhhhhcccCCceEEEEe-cCCC---HHhh-------h
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------L  112 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------l  112 (289)
                      +++.|+||+|.+|..++..|+..|.  .|++.+... .  +....++....  .++..+. +-+|   .++.       +
T Consensus        28 k~~lVTGas~GIG~aia~~la~~G~--~Vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~  103 (267)
T 3u5t_A           28 KVAIVTGASRGIGAAIAARLASDGF--TVVINYAGKAAAAEEVAGKIEAAG--GKALTAQADVSDPAAVRRLFATAEEAF  103 (267)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHHTC--EEEEEESSCSHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4799999999999999999999997  888876544 1  12222222221  1222211 1112   2222       2


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCC
Q 022947          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~  185 (289)
                      ...|++|.+||......   .+   -...+..|+.....+++.+.+.- +.+.|+++|.....            .+.|.
T Consensus       104 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~------------~~~~~  171 (267)
T 3u5t_A          104 GGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVG------------LLHPS  171 (267)
T ss_dssp             SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHH------------HCCTT
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhc------------cCCCC
Confidence            47899999999753221   11   23356678777776666665543 35677776642210            02333


Q ss_pred             CcEEEeeeccHHHHHHHHHHHcCCCCcceeee
Q 022947          186 KRLLGVTMLDVVRANTFVAEVLGLDPREVDVP  217 (289)
Q Consensus       186 ~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~  217 (289)
                      .-.++.+......+-+.++++++  +..|++.
T Consensus       172 ~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn  201 (267)
T 3u5t_A          172 YGIYAAAKAGVEAMTHVLSKELR--GRDITVN  201 (267)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTT--TSCCEEE
T ss_pred             chHHHHHHHHHHHHHHHHHHHhh--hhCCEEE
Confidence            33333333333456677788874  4445443

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=97.33  E-value=0.00024  Score=62.50  Aligned_cols=64  Identities=17%  Similarity=0.243  Sum_probs=45.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      |||+|||+ |.+|..++..|+..|+  +|+++|+........++....    +.     ++++++++++|+||++.
T Consensus         1 M~I~iIG~-G~mG~~la~~l~~~g~--~V~~~~~~~~~~~~~~~~~~g----~~-----~~~~~~~~~aDvvi~~v   64 (264)
T 1i36_A            1 LRVGFIGF-GEVAQTLASRLRSRGV--EVVTSLEGRSPSTIERARTVG----VT-----ETSEEDVYSCPVVISAV   64 (264)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTC--EEEECCTTCCHHHHHHHHHHT----CE-----ECCHHHHHTSSEEEECS
T ss_pred             CeEEEEec-hHHHHHHHHHHHHCCC--eEEEeCCccCHHHHHHHHHCC----Cc-----CCHHHHHhcCCEEEEEC
Confidence            58999998 9999999999999887  898887732222222232211    11     23457789999999985

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=97.33  E-value=0.00092  Score=58.53  Aligned_cols=116  Identities=10%  Similarity=0.031  Sum_probs=65.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal-------  112 (289)
                      ++++.|+||+|.+|..++..|+..|.  +|++++.+..  .....++.... ..++..+. +-+|   .++.+       
T Consensus         7 ~k~vlVTGas~gIG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   83 (264)
T 3i4f_A            7 VRHALITAGTKGLGKQVTEKLLAKGY--SVTVTYHSDTTAMETMKETYKDV-EERLQFVQADVTKKEDLHKIVEEAMSHF   83 (264)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHTGGG-GGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             cCEEEEeCCCchhHHHHHHHHHHCCC--EEEEEcCCChHHHHHHHHHHHhc-CCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            45799999999999999999999997  8999987652  11112211111 12232221 1112   22233       


Q ss_pred             CCCCEEEEcCCC--CCC-C--CCch---hhHHHhhHHHHHHHHHH----HHHhCCCcEEEEecCC
Q 022947          113 TGMDIVIIPAGV--PRK-P--GMTR---DDLFNINAGIVKTLCEG----IAKCCPKAIVNLISNP  165 (289)
Q Consensus       113 ~~aDiVIitag~--~~~-~--g~~r---~d~~~~N~~i~~~i~~~----i~~~~p~aiviv~tNP  165 (289)
                      ...|++|.+||.  ... +  ..+.   .+.+..|+.....+.+.    +++.. .+.|+++|..
T Consensus        84 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~iss~  147 (264)
T 3i4f_A           84 GKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQN-FGRIINYGFQ  147 (264)
T ss_dssp             SCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCT
T ss_pred             CCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcC-CCeEEEEeec
Confidence            388999999994  211 1  1111   23456665554444444    45543 4566666543

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=97.33  E-value=0.00022  Score=61.21  Aligned_cols=104  Identities=20%  Similarity=0.215  Sum_probs=69.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      .+++.|+||+|.+|..++..|+..|.  .|++.|++..    .|+.+...   +      ..+-+.+...|++|.+||..
T Consensus         6 ~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~----~D~~~~~~---v------~~~~~~~g~id~lv~nAg~~   70 (223)
T 3uce_A            6 KTVYVVLGGTSGIGAELAKQLESEHT--IVHVASRQTG----LDISDEKS---V------YHYFETIGAFDHLIVTAGSY   70 (223)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHCSTTE--EEEEESGGGT----CCTTCHHH---H------HHHHHHHCSEEEEEECCCCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEecCCcc----cCCCCHHH---H------HHHHHHhCCCCEEEECCCCC
Confidence            34789999999999999999999987  8999987542    34443220   0      01223456889999999965


Q ss_pred             CCC----CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 022947          126 RKP----GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (289)
Q Consensus       126 ~~~----g~~---r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tN  164 (289)
                      ...    ..+   ..+.+..|+.....+.+.+.++- +.+.|+++|.
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS  117 (223)
T 3uce_A           71 APAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSG  117 (223)
T ss_dssp             CCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             CCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecc
Confidence            221    122   23356778887777777776653 3566776664

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.33  E-value=0.00069  Score=58.02  Aligned_cols=70  Identities=19%  Similarity=0.175  Sum_probs=45.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCC---HHhh-hCCCCEEEEcC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ---LEDA-LTGMDIVIIPA  122 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d---~~ea-l~~aDiVIita  122 (289)
                      |||.|+|+ |.+|+.++..|...|+  +++++|.++..  +.++.... ...+. ....++   ++++ +++||+||++.
T Consensus         1 M~iiIiG~-G~~G~~la~~L~~~g~--~v~vid~~~~~--~~~l~~~~-~~~~i-~gd~~~~~~l~~a~i~~ad~vi~~~   73 (218)
T 3l4b_C            1 MKVIIIGG-ETTAYYLARSMLSRKY--GVVIINKDREL--CEEFAKKL-KATII-HGDGSHKEILRDAEVSKNDVVVILT   73 (218)
T ss_dssp             CCEEEECC-HHHHHHHHHHHHHTTC--CEEEEESCHHH--HHHHHHHS-SSEEE-ESCTTSHHHHHHHTCCTTCEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHH--HHHHHHHc-CCeEE-EcCCCCHHHHHhcCcccCCEEEEec
Confidence            68999998 9999999999999998  99999987622  12222111 11111 111112   3333 78999999985


Q ss_pred             C
Q 022947          123 G  123 (289)
Q Consensus       123 g  123 (289)
                      +
T Consensus        74 ~   74 (218)
T 3l4b_C           74 P   74 (218)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=97.32  E-value=0.00082  Score=58.66  Aligned_cols=104  Identities=20%  Similarity=0.257  Sum_probs=63.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhH------HhhhhcccCCceEEEEecCCCHHhhh-------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV------TADISHMDTNAVVRGFLGQQQLEDAL-------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~------~~DL~~~~~~~~v~~~~~t~d~~eal-------  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++....      ..|+.+            ..++++.+       
T Consensus         7 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~D~~d------------~~~~~~~~~~~~~~~   72 (250)
T 2fwm_X            7 GKNVWVTGAGKGIGYATALAFVEAGA--KVTGFDQAFTQEQYPFATEVMDVAD------------AAQVAQVCQRLLAET   72 (250)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCCCSSCCSSEEEECCTTC------------HHHHHHHHHHHHHHC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCchhhhcCCceEEEcCCCC------------HHHHHHHHHHHHHHc
Confidence            35899999999999999999999997  8999998752100      011111            11122222       


Q ss_pred             CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHH----HHHHHHhCCCcEEEEecC
Q 022947          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTL----CEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       113 ~~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~~~i----~~~i~~~~p~aiviv~tN  164 (289)
                      ...|++|.+||.....   ..+   ..+.+..|+.....+    .+.+++.. .+.|+++|.
T Consensus        73 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS  133 (250)
T 2fwm_X           73 ERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQR-GGAIVTVAS  133 (250)
T ss_dssp             SCCCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcC-CCEEEEECc
Confidence            3799999999975321   112   233455665544444    44445443 456666654

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=97.32  E-value=0.00047  Score=60.88  Aligned_cols=113  Identities=14%  Similarity=0.190  Sum_probs=64.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-c--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh-------
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal-------  112 (289)
                      +++.|+||+|.+|..++..|+..|.  .|++.|.+. .  .....++....  .++..+. +-+|   .++.+       
T Consensus        26 k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~  101 (269)
T 3gk3_A           26 RVAFVTGGMGGLGAAISRRLHDAGM--AVAVSHSERNDHVSTWLMHERDAG--RDFKAYAVDVADFESCERCAEKVLADF  101 (269)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTC--EEEEEECSCHHHHHHHHHHHHTTT--CCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCchHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            4688999999999999999999997  899998655 1  11112222211  1222211 1122   22222       


Q ss_pred             CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHH----HHHHHhCCCcEEEEecC
Q 022947          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLC----EGIAKCCPKAIVNLISN  164 (289)
Q Consensus       113 ~~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~~~i~----~~i~~~~p~aiviv~tN  164 (289)
                      ...|++|.+||.....   ..+   -...+..|+.....+.    +.+.+. ..+.|+++|.
T Consensus       102 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~g~iv~isS  162 (269)
T 3gk3_A          102 GKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVER-RFGRIVNIGS  162 (269)
T ss_dssp             SCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             CCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEeCC
Confidence            3899999999975322   112   2234556655544444    444433 3466776664

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.32  E-value=0.00059  Score=59.69  Aligned_cols=108  Identities=16%  Similarity=0.165  Sum_probs=65.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEec-CCCHH---hhhCCCCEEEEc
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQLE---DALTGMDIVIIP  121 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~-t~d~~---eal~~aDiVIit  121 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++.  ...++.      .+..+.+ ..+.+   +.+.+.|++|.+
T Consensus        19 ~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~--~~~~~~------~~~~~~D~~~~~~~~~~~~~~iD~lv~~   88 (249)
T 1o5i_A           19 DKGVLVLAASRGIGRAVADVLSQEGA--EVTICARNEE--LLKRSG------HRYVVCDLRKDLDLLFEKVKEVDILVLN   88 (249)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHH--HHHHTC------SEEEECCTTTCHHHHHHHSCCCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHH--HHHhhC------CeEEEeeHHHHHHHHHHHhcCCCEEEEC
Confidence            45899999999999999999999997  8999998751  111121      1111100 12232   334489999999


Q ss_pred             CCCCCCCC---Cc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 022947          122 AGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       122 ag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      ||......   .+   ....+..|+..    .+.+.+.+++.. .+.|+++|.
T Consensus        89 Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  140 (249)
T 1o5i_A           89 AGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKG-WGRIVAITS  140 (249)
T ss_dssp             CCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEcc
Confidence            99753211   11   12344555443    455566666553 456666654

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=97.29  E-value=0.00098  Score=59.93  Aligned_cols=75  Identities=21%  Similarity=0.232  Sum_probs=46.4

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEE-EeCCCchhHHhhhhcccC-CceEEEEecCCCHHhhhCCCCEEEEc
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHL-YDVVNTPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIP  121 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~L-vD~~~~~g~~~DL~~~~~-~~~v~~~~~t~d~~eal~~aDiVIit  121 (289)
                      ++++||+|+||+|.+|+.++..+...+-. ||+- +|.+.......|+..... ...+.   .++|+++.++++|+||..
T Consensus         5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~-eLv~~~d~~~~~~~G~d~gel~g~~~gv~---v~~dl~~ll~~~DVVIDf   80 (272)
T 4f3y_A            5 MSSMKIAIAGASGRMGRMLIEAVLAAPDA-TLVGALDRTGSPQLGQDAGAFLGKQTGVA---LTDDIERVCAEADYLIDF   80 (272)
T ss_dssp             -CCEEEEESSTTSHHHHHHHHHHHHCTTE-EEEEEBCCTTCTTTTSBTTTTTTCCCSCB---CBCCHHHHHHHCSEEEEC
T ss_pred             ccccEEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEEecCcccccccHHHHhCCCCCce---ecCCHHHHhcCCCEEEEc
Confidence            45789999997799999999888776533 5554 687642111122222110 11222   235787888899999986


Q ss_pred             C
Q 022947          122 A  122 (289)
Q Consensus       122 a  122 (289)
                      .
T Consensus        81 T   81 (272)
T 4f3y_A           81 T   81 (272)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=97.29  E-value=0.00041  Score=60.99  Aligned_cols=115  Identities=12%  Similarity=0.090  Sum_probs=69.9

Q ss_pred             CCEEEEEcCC--CccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcccCCceEEEE-ecCCC---HHhhhC-----
Q 022947           46 GFKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGF-LGQQQ---LEDALT-----  113 (289)
Q Consensus        46 ~~KI~IIGaa--G~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~~~~~~v~~~-~~t~d---~~eal~-----  113 (289)
                      .+++.|+||+  |.+|..++..|+..|.  +|+++|+++. .....++.....  .+..+ .+-+|   .++.++     
T Consensus         8 ~k~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~   83 (261)
T 2wyu_A            8 GKKALVMGVTNQRSLGFAIAAKLKEAGA--EVALSYQAERLRPEAEKLAEALG--GALLFRADVTQDEELDALFAGVKEA   83 (261)
T ss_dssp             TCEEEEESCCSSSSHHHHHHHHHHHHTC--EEEEEESCGGGHHHHHHHHHHTT--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CcEEEECCCCCHHHHHHHHHHHHHH
Confidence            4589999998  8999999999999997  8999998762 112223322110  11111 11112   222233     


Q ss_pred             --CCCEEEEcCCCCCC-----C--CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 022947          114 --GMDIVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (289)
Q Consensus       114 --~aDiVIitag~~~~-----~--g~~---r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tN  164 (289)
                        ..|++|.+||....     +  ..+   ....+..|+.....+.+.+.+.- ..+.|+++|.
T Consensus        84 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  147 (261)
T 2wyu_A           84 FGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTY  147 (261)
T ss_dssp             HSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEEC
T ss_pred             cCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEec
Confidence              78999999997532     1  111   23456778777777777766542 2356776664

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=97.28  E-value=0.0026  Score=57.07  Aligned_cols=115  Identities=19%  Similarity=0.147  Sum_probs=72.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc----hhHHhhhhcccCCceEEEEe-cCCC---HH-------h
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTNAVVRGFL-GQQQ---LE-------D  110 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~----~g~~~DL~~~~~~~~v~~~~-~t~d---~~-------e  110 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|++..    ......+...  ..++..+. +-+|   .+       +
T Consensus        49 ~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~  124 (294)
T 3r3s_A           49 DRKALVTGGDSGIGRAAAIAYAREGA--DVAINYLPAEEEDAQQVKALIEEC--GRKAVLLPGDLSDESFARSLVHKARE  124 (294)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCGGGHHHHHHHHHHHHHT--TCCEEECCCCTTSHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchhHHHHHHHHHHHc--CCcEEEEEecCCCHHHHHHHHHHHHH
Confidence            46899999999999999999999997  8999988631    1111112211  12222211 1112   11       1


Q ss_pred             hhCCCCEEEEcCCCCCCCC----Cc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 022947          111 ALTGMDIVIIPAGVPRKPG----MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (289)
Q Consensus       111 al~~aDiVIitag~~~~~g----~~---r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tN  164 (289)
                      .+...|++|.+||.....+    .+   ....+..|+.....+.+.+...- ..+.|+++|.
T Consensus       125 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS  186 (294)
T 3r3s_A          125 ALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSS  186 (294)
T ss_dssp             HHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred             HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence            2348899999999753221    11   23467788888888888877664 3567777664

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=97.28  E-value=0.00097  Score=59.33  Aligned_cols=117  Identities=12%  Similarity=0.093  Sum_probs=70.0

Q ss_pred             CCEEEEEcCC--CccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcccCCce-EEE-EecCCCHHhhh-------C
Q 022947           46 GFKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAV-VRG-FLGQQQLEDAL-------T  113 (289)
Q Consensus        46 ~~KI~IIGaa--G~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~~~~~~-v~~-~~~t~d~~eal-------~  113 (289)
                      .+++.|+||+  |.+|..++..|+..|.  +|+++|+++. .....++........ +.. .+...+.++.+       .
T Consensus        21 ~k~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   98 (285)
T 2p91_A           21 GKRALITGVANERSIAYGIAKSFHREGA--QLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEENWG   98 (285)
T ss_dssp             TCEEEECCCSSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            3579999998  8999999999999997  8999998762 112222322100011 110 11111222222       3


Q ss_pred             CCCEEEEcCCCCCC-----C--CCc---hhhHHHhhHHHHHHHHHHHHHhC--CCcEEEEecC
Q 022947          114 GMDIVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKTLCEGIAKCC--PKAIVNLISN  164 (289)
Q Consensus       114 ~aDiVIitag~~~~-----~--g~~---r~d~~~~N~~i~~~i~~~i~~~~--p~aiviv~tN  164 (289)
                      ..|++|++||....     +  ..+   -...+..|+.....+++.+.++-  ..+.|+++|.
T Consensus        99 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS  161 (285)
T 2p91_A           99 SLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSY  161 (285)
T ss_dssp             CCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEEC
T ss_pred             CCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence            78999999997532     1  111   23456778777777777766542  2467777664

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=97.28  E-value=0.0032  Score=55.37  Aligned_cols=147  Identities=14%  Similarity=0.092  Sum_probs=84.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-c----hhHHhhhhcccCCceEEEEe-cCCC---HHhhh----
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T----PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL----  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~----~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal----  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+.. .    .....++...  ..++..+. +-+|   .++.+    
T Consensus        11 ~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~   86 (262)
T 3ksu_A           11 NKVIVIAGGIKNLGALTAKTFALESV--NLVLHYHQAKDSDTANKLKDELEDQ--GAKVALYQSDLSNEEEVAKLFDFAE   86 (262)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHTTSSC--EEEEEESCGGGHHHHHHHHHHHHTT--TCEEEEEECCCCSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecCccCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHH
Confidence            45899999999999999999999997  899988753 1    1112233222  12333221 1112   22222    


Q ss_pred             ---CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCC
Q 022947          113 ---TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (289)
Q Consensus       113 ---~~aDiVIitag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~  182 (289)
                         ...|++|.+||......   .+   -...+..|+.....+.+.+..+- +.+.|++++......            +
T Consensus        87 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~------------~  154 (262)
T 3ksu_A           87 KEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAA------------Y  154 (262)
T ss_dssp             HHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHHH------------H
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhcc------------C
Confidence               37899999999753321   11   23356678877777777776542 456677766533111            1


Q ss_pred             CCCCcEEEeeeccHHHHHHHHHHHcC
Q 022947          183 YDPKRLLGVTMLDVVRANTFVAEVLG  208 (289)
Q Consensus       183 ~~~~kviG~t~lds~R~~~~lA~~l~  208 (289)
                      .+..-.++.+......+-+.++.+++
T Consensus       155 ~~~~~~Y~asKaa~~~l~~~la~e~~  180 (262)
T 3ksu_A          155 TGFYSTYAGNKAPVEHYTRAASKELM  180 (262)
T ss_dssp             HCCCCC-----CHHHHHHHHHHHHTT
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHH
Confidence            22333456654444557778888874

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=97.28  E-value=0.00067  Score=60.12  Aligned_cols=34  Identities=24%  Similarity=0.374  Sum_probs=31.4

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      +++.|+||+|.+|..++..|+..|.  +|+++|++.
T Consensus        31 k~vlVTGas~GIG~aia~~l~~~G~--~Vi~~~r~~   64 (281)
T 3ppi_A           31 ASAIVSGGAGGLGEATVRRLHADGL--GVVIADLAA   64 (281)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            4799999999999999999999997  899999876

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=97.27  E-value=0.0014  Score=58.26  Aligned_cols=77  Identities=18%  Similarity=0.158  Sum_probs=50.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCCH----H-------hh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL----E-------DA  111 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~----~-------ea  111 (289)
                      .++|.|+||+|.+|..++..|+..|.  .|++.|++..  .....++.... ..++..+. +-+|.    +       +.
T Consensus        12 ~k~vlITGas~GIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~v~~~~~~~~~~   88 (311)
T 3o26_A           12 RRCAVVTGGNKGIGFEICKQLSSNGI--MVVLTCRDVTKGHEAVEKLKNSN-HENVVFHQLDVTDPIATMSSLADFIKTH   88 (311)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT-CCSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CcEEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC-CCceEEEEccCCCcHHHHHHHHHHHHHh
Confidence            45799999999999999999999997  8999999862  22233343321 12233221 11121    1       12


Q ss_pred             hCCCCEEEEcCCCC
Q 022947          112 LTGMDIVIIPAGVP  125 (289)
Q Consensus       112 l~~aDiVIitag~~  125 (289)
                      +...|++|.+||..
T Consensus        89 ~g~iD~lv~nAg~~  102 (311)
T 3o26_A           89 FGKLDILVNNAGVA  102 (311)
T ss_dssp             HSSCCEEEECCCCC
T ss_pred             CCCCCEEEECCccc
Confidence            34899999999975

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=97.27  E-value=0.00063  Score=60.27  Aligned_cols=116  Identities=15%  Similarity=0.100  Sum_probs=70.6

Q ss_pred             CCEEEEEcCC--CccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcccCCceEEEEecCCC---HHhhh-------
Q 022947           46 GFKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQ---LEDAL-------  112 (289)
Q Consensus        46 ~~KI~IIGaa--G~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~~~~~~v~~~~~t~d---~~eal-------  112 (289)
                      .+++.|+||+  |.+|..++..|+..|.  +|+++|+++. .....++........... .+-+|   .++.+       
T Consensus         6 ~k~vlVTGas~~~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~~~~~~-~D~~~~~~v~~~~~~~~~~~   82 (275)
T 2pd4_A            6 GKKGLIVGVANNKSIAYGIAQSCFNQGA--TLAFTYLNESLEKRVRPIAQELNSPYVYE-LDVSKEEHFKSLYNSVKKDL   82 (275)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHTTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEE-CCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCcEEEE-cCCCCHHHHHHHHHHHHHHc
Confidence            4589999998  8999999999999997  8999998762 222223322110011110 01112   22222       


Q ss_pred             CCCCEEEEcCCCCCC-----C--CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 022947          113 TGMDIVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (289)
Q Consensus       113 ~~aDiVIitag~~~~-----~--g~~---r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tN  164 (289)
                      ...|++|.+||....     +  ..+   -...+..|+.....+.+.+.+.- +.+.|+++|.
T Consensus        83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  145 (275)
T 2pd4_A           83 GSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSY  145 (275)
T ss_dssp             SCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             CCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEec
Confidence            367999999997532     1  111   23456778877777777776552 2366777664

>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}

Probab=97.27  E-value=0.0015  Score=61.48  Aligned_cols=72  Identities=17%  Similarity=0.320  Sum_probs=46.8

Q ss_pred             CCCEEEEEcCCCccHHHHHH-HHHhCCC-ccEEEEEeCCCchhHH-hhhhcccCCceEEEEecCCCHHhhhCCCCEEEEc
Q 022947           45 PGFKVAVLGAAGGIGQPLAM-LMKINPL-VSVLHLYDVVNTPGVT-ADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~-~L~~~g~-~~eI~LvD~~~~~g~~-~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIit  121 (289)
                      .++||+|+||+|+||.-+.. .|..+++ ..++.++.... .|+. .++...  ...+..   .++. +.++++|+||++
T Consensus         3 ~~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~-aG~~~~~~~~~--~~~v~~---~~~~-~~~~~vDvvf~a   75 (377)
T 3uw3_A            3 GSMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTSN-AGGKAPSFAKN--ETTLKD---ATSI-DDLKKCDVIITC   75 (377)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSC-TTSBCCTTCCS--CCBCEE---TTCH-HHHHTCSEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEechh-cCCCHHHcCCC--ceEEEe---CCCh-hHhcCCCEEEEC
Confidence            45799999999999999998 7777763 35888886543 3322 233211  112221   1233 568899999998


Q ss_pred             CC
Q 022947          122 AG  123 (289)
Q Consensus       122 ag  123 (289)
                      .|
T Consensus        76 ~~   77 (377)
T 3uw3_A           76 QG   77 (377)
T ss_dssp             SC
T ss_pred             CC
Confidence            65

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=97.26  E-value=0.0015  Score=57.15  Aligned_cols=156  Identities=15%  Similarity=0.084  Sum_probs=85.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHh---CCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh----
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKI---NPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL----  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~---~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal----  112 (289)
                      .+++.|+||+|.+|..++..|+.   .|.  +|+++|+++.  .....++.......++..+. +-+|   .++.+    
T Consensus         6 ~k~~lVTGas~gIG~~ia~~l~~~~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   83 (259)
T 1oaa_A            6 CAVCVLTGASRGFGRALAPQLARLLSPGS--VMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVR   83 (259)
T ss_dssp             SEEEEESSCSSHHHHHHHHHHHTTBCTTC--EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHhhcCCC--eEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHH
Confidence            35789999999999999999998   787  8999998762  22222332210011222221 1122   11211    


Q ss_pred             C-----CCC--EEEEcCCCCCCCC------Cc---hhhHHHhhHHHHHHHHHHHHHhC-----CCcEEEEecCCCcccHH
Q 022947          113 T-----GMD--IVIIPAGVPRKPG------MT---RDDLFNINAGIVKTLCEGIAKCC-----PKAIVNLISNPVNSTVP  171 (289)
Q Consensus       113 ~-----~aD--iVIitag~~~~~g------~~---r~d~~~~N~~i~~~i~~~i~~~~-----p~aiviv~tNPvd~~t~  171 (289)
                      +     ..|  ++|.+||.....+      .+   -...+..|+.....+.+.+...-     ..+.|+++|.-...   
T Consensus        84 ~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~~---  160 (259)
T 1oaa_A           84 ELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCAL---  160 (259)
T ss_dssp             HSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGT---
T ss_pred             hccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchhc---
Confidence            1     357  9999999743211      12   23456778777777777665543     23567776643221   


Q ss_pred             HHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          172 IAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       172 ~~~~~~~~~~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                               .+.+..-.++.+......+-+.++.+++  +  |++.++
T Consensus       161 ---------~~~~~~~~Y~asKaa~~~~~~~la~e~~--~--i~vn~v  195 (259)
T 1oaa_A          161 ---------QPYKGWGLYCAGKAARDMLYQVLAAEEP--S--VRVLSY  195 (259)
T ss_dssp             ---------SCCTTCHHHHHHHHHHHHHHHHHHHHCT--T--EEEEEE
T ss_pred             ---------CCCCCccHHHHHHHHHHHHHHHHHhhCC--C--ceEEEe
Confidence                     1223222333332223345667777774  2  665544

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=97.26  E-value=0.00033  Score=62.65  Aligned_cols=64  Identities=20%  Similarity=0.279  Sum_probs=47.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      |||+|||+ |.+|..++..|...|+  +|.++|+++...  ..+...    .+..   +++++++++++|+||++.
T Consensus         1 m~i~iiG~-G~mG~~~a~~l~~~g~--~V~~~~~~~~~~--~~~~~~----g~~~---~~~~~~~~~~~Dvvi~~v   64 (296)
T 2gf2_A            1 MPVGFIGL-GNMGNPMAKNLMKHGY--PLIIYDVFPDAC--KEFQDA----GEQV---VSSPADVAEKADRIITML   64 (296)
T ss_dssp             CCEEEECC-STTHHHHHHHHHHTTC--CEEEECSSTHHH--HHHHTT----TCEE---CSSHHHHHHHCSEEEECC
T ss_pred             CeEEEEec-cHHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHHc----CCee---cCCHHHHHhcCCEEEEeC
Confidence            58999998 9999999999998887  899999876221  122221    1221   246677889999999985

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=97.25  E-value=0.00066  Score=60.18  Aligned_cols=111  Identities=21%  Similarity=0.186  Sum_probs=64.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchh--HHhhhhcccCCceEEEEe-cCCC---HHhh-------h
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFL-GQQQ---LEDA-------L  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g--~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------l  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++...  ...++..      +..+. +-+|   .++.       +
T Consensus         9 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~------~~~~~~Dv~d~~~v~~~~~~~~~~~   80 (270)
T 1yde_A            9 GKVVVVTGGGRGIGAGIVRAFVNSGA--RVVICDKDESGGRALEQELPG------AVFILCDVTQEDDVKTLVSETIRRF   80 (270)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHCTT------EEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcC------CeEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999997  899999875211  1111111      11110 1112   2222       2


Q ss_pred             CCCCEEEEcCCCCCCCC----Cc---hhhHHHhhHHHHHHHHHHHHHhC--CCcEEEEecC
Q 022947          113 TGMDIVIIPAGVPRKPG----MT---RDDLFNINAGIVKTLCEGIAKCC--PKAIVNLISN  164 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g----~~---r~d~~~~N~~i~~~i~~~i~~~~--p~aiviv~tN  164 (289)
                      ...|++|.+||.....+    .+   ....+..|+.....+++.+..+-  ..+.|+++|.
T Consensus        81 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS  141 (270)
T 1yde_A           81 GRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISS  141 (270)
T ss_dssp             SCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence            37899999999753211    11   23355667655544444443210  1356666654

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=97.24  E-value=0.0032  Score=56.43  Aligned_cols=157  Identities=15%  Similarity=0.118  Sum_probs=83.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCC-ccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe----cCCCHHhhh------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL----GQQQLEDAL------  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~-~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~----~t~d~~eal------  112 (289)
                      .+++.|+||+|.+|..++..|+..|. ...|++.|++..  .....++.......++..+.    ..++.++.+      
T Consensus        33 ~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  112 (287)
T 3rku_A           33 KKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQE  112 (287)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCGG
T ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence            35899999999999999999987763 238999998762  22222332211112222211    112233333      


Q ss_pred             -CCCCEEEEcCCCCCCC----CCc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHh
Q 022947          113 -TGMDIVIIPAGVPRKP----GMT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKV  180 (289)
Q Consensus       113 -~~aDiVIitag~~~~~----g~~---r~d~~~~N~~i~----~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~  180 (289)
                       ...|++|.+||.....    ..+   -.+.+..|+...    +.+.+.+++. ..+.|+++|.....            
T Consensus       113 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~IV~isS~~~~------------  179 (287)
T 3rku_A          113 FKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAK-NSGDIVNLGSIAGR------------  179 (287)
T ss_dssp             GCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCGGGT------------
T ss_pred             cCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEEECChhhc------------
Confidence             3689999999965321    112   233556665544    4444444544 34566666543221            


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeee
Q 022947          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVP  217 (289)
Q Consensus       181 ~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~  217 (289)
                      .+.+..-.++.+..-...+-+.++.+++  +..|++.
T Consensus       180 ~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gIrvn  214 (287)
T 3rku_A          180 DAYPTGSIYCASKFAVGAFTDSLRKELI--NTKIRVI  214 (287)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHHHHHHHTT--TSSCEEE
T ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHhh--hcCCEEE
Confidence            1233322333332223345667777764  3444443

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=97.24  E-value=0.0033  Score=56.00  Aligned_cols=117  Identities=15%  Similarity=0.187  Sum_probs=73.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch---------hHHhhhhcccCCceEEEEe-cCCC---HHhhh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---------GVTADISHMDTNAVVRGFL-GQQQ---LEDAL  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~---------g~~~DL~~~~~~~~v~~~~-~t~d---~~eal  112 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|++...         ....++...  ..++..+. +-+|   .++.+
T Consensus         9 ~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~   84 (285)
T 3sc4_A            9 GKTMFISGGSRGIGLAIAKRVAADGA--NVALVAKSAEPHPKLPGTIYTAAKEIEEA--GGQALPIVGDIRDGDAVAAAV   84 (285)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHTTTC--EEEEEESCCSCCSSSCCCHHHHHHHHHHH--TSEEEEEECCTTSHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECChhhhhhhhHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHH
Confidence            35899999999999999999999997  89999997621         112222221  12222221 1112   22222


Q ss_pred             -------CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHhC---CCcEEEEecCCC
Q 022947          113 -------TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCC---PKAIVNLISNPV  166 (289)
Q Consensus       113 -------~~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~~---p~aiviv~tNPv  166 (289)
                             ...|++|.+||.....   ..+   -...+..|+.....+.+.+...-   ..+.|+++|...
T Consensus        85 ~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~  154 (285)
T 3sc4_A           85 AKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPI  154 (285)
T ss_dssp             HHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCC
T ss_pred             HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChh
Confidence                   3899999999975321   112   23356678877777777766552   456788777644

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=97.22  E-value=0.0022  Score=57.38  Aligned_cols=35  Identities=20%  Similarity=0.096  Sum_probs=31.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEe-CCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYD-VVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD-~~~   82 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++| +++
T Consensus         9 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~~r~~   44 (291)
T 1e7w_A            9 VPVALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRSA   44 (291)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEcCCCH
Confidence            35799999999999999999999997  899999 765

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=97.21  E-value=0.00091  Score=58.56  Aligned_cols=113  Identities=15%  Similarity=0.125  Sum_probs=64.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhh-------hC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------LT  113 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------l~  113 (289)
                      +++.|+||+|.+|..++..|+..|....|+++++++.  .....++.     .++..+. +-+|   .++.       +.
T Consensus         3 k~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   77 (254)
T 3kzv_A            3 KVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYG-----DRFFYVVGDITEDSVLKQLVNAAVKGHG   77 (254)
T ss_dssp             CEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHHG-----GGEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHhC-----CceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            5789999999999999999988753338888888752  11111111     1112111 1112   2222       24


Q ss_pred             CCCEEEEcCCCCCC--C--CCch---hhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecCCC
Q 022947          114 GMDIVIIPAGVPRK--P--GMTR---DDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPV  166 (289)
Q Consensus       114 ~aDiVIitag~~~~--~--g~~r---~d~~~~N~~i~----~~i~~~i~~~~p~aiviv~tNPv  166 (289)
                      ..|++|.+||....  +  ..+.   ...+..|+...    +.+.+.+++..  +.|+++|...
T Consensus        78 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~--g~iv~isS~~  139 (254)
T 3kzv_A           78 KIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN--GNVVFVSSDA  139 (254)
T ss_dssp             CCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCSC
T ss_pred             CccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CeEEEEcCch
Confidence            78999999997422  1  1121   23455665544    44445445543  6677766543

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=97.17  E-value=0.00066  Score=62.74  Aligned_cols=61  Identities=16%  Similarity=0.296  Sum_probs=46.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      .+||+|||. |.+|+.+|..+...|.  +|..+|++.....       .    ...   ..++++.+++||+|+++..
T Consensus       164 g~~vgIIG~-G~iG~~vA~~l~~~G~--~V~~~dr~~~~~~-------g----~~~---~~~l~ell~~aDvVil~vP  224 (333)
T 3ba1_A          164 GKRVGIIGL-GRIGLAVAERAEAFDC--PISYFSRSKKPNT-------N----YTY---YGSVVELASNSDILVVACP  224 (333)
T ss_dssp             TCCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSCCTTC-------C----SEE---ESCHHHHHHTCSEEEECSC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCCchhcc-------C----cee---cCCHHHHHhcCCEEEEecC
Confidence            568999998 9999999999998887  8999998752110       1    111   2357788999999999853

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=97.17  E-value=0.00051  Score=59.71  Aligned_cols=105  Identities=17%  Similarity=0.246  Sum_probs=66.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHh-CCCccEEEEEeCCCc-hhH-----HhhhhcccCCceEEEEecCCCHHhhh-----C
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNT-PGV-----TADISHMDTNAVVRGFLGQQQLEDAL-----T  113 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~-~g~~~eI~LvD~~~~-~g~-----~~DL~~~~~~~~v~~~~~t~d~~eal-----~  113 (289)
                      ++++.|+||+|.+|..++..|+. .+.  .|++.|+++. ...     ..|+.+.            .+.++.+     .
T Consensus         4 ~k~vlITGas~gIG~~~a~~l~~~~g~--~v~~~~~~~~~~~~~~~~~~~Dv~~~------------~~v~~~~~~~~~~   69 (244)
T 4e4y_A            4 MANYLVTGGSKGIGKAVVELLLQNKNH--TVINIDIQQSFSAENLKFIKADLTKQ------------QDITNVLDIIKNV   69 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTSTTE--EEEEEESSCCCCCTTEEEEECCTTCH------------HHHHHHHHHTTTC
T ss_pred             CCeEEEeCCCChHHHHHHHHHHhcCCc--EEEEeccccccccccceEEecCcCCH------------HHHHHHHHHHHhC
Confidence            45799999999999999999988 665  8899998762 111     1122211            1122222     2


Q ss_pred             CCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 022947          114 GMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (289)
Q Consensus       114 ~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tN  164 (289)
                      ..|++|.+||.....   ..+   -...+..|+.....+.+.+...- ..+.|++++.
T Consensus        70 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS  127 (244)
T 4e4y_A           70 SFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGS  127 (244)
T ss_dssp             CEEEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECC
T ss_pred             CCCEEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECC
Confidence            789999999975321   122   23456778877777777766553 2356666654

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=97.16  E-value=0.00098  Score=59.40  Aligned_cols=35  Identities=20%  Similarity=0.268  Sum_probs=31.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|++.
T Consensus         5 gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~   39 (281)
T 3zv4_A            5 GEVALITGGASGLGRALVDRFVAEGA--RVAVLDKSA   39 (281)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCH
Confidence            45899999999999999999999997  999999875

>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A

Probab=97.15  E-value=0.0023  Score=59.98  Aligned_cols=70  Identities=17%  Similarity=0.340  Sum_probs=45.8

Q ss_pred             CEEEEEcCCCccHHHHHH-HHHhCCC-ccEEEEEeCCCchhHH-hhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           47 FKVAVLGAAGGIGQPLAM-LMKINPL-VSVLHLYDVVNTPGVT-ADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~-~L~~~g~-~~eI~LvD~~~~~g~~-~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      |||+|+||+|++|..+.. .|..+++ ..++.++.... .|+. .++...  ...+..   .++. +.++++|+||++.|
T Consensus         1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~-aG~~~~~~~~~--~~~~~~---~~~~-~~~~~~Dvvf~a~~   73 (370)
T 3pzr_A            1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQ-IGVPAPNFGKD--AGMLHD---AFDI-ESLKQLDAVITCQG   73 (370)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSS-TTSBCCCSSSC--CCBCEE---TTCH-HHHTTCSEEEECSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccc-cCcCHHHhCCC--ceEEEe---cCCh-hHhccCCEEEECCC
Confidence            689999999999999998 7777773 35888886544 3332 223211  112221   2233 56899999999865

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=97.12  E-value=0.0084  Score=52.97  Aligned_cols=120  Identities=16%  Similarity=0.180  Sum_probs=70.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch---------hHHhhhhcccCCceEEEEe-cCCC---HHhh-
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---------GVTADISHMDTNAVVRGFL-GQQQ---LEDA-  111 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~---------g~~~DL~~~~~~~~v~~~~-~t~d---~~ea-  111 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|++...         ....++...  ..++..+. +-+|   .++. 
T Consensus         6 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~   81 (274)
T 3e03_A            6 GKTLFITGASRGIGLAIALRAARDGA--NVAIAAKSAVANPKLPGTIHSAAAAVNAA--GGQGLALKCDIREEDQVRAAV   81 (274)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCSCCTTSCCCHHHHHHHHHHH--TSEEEEEECCTTCHHHHHHHH
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeccchhhhhhHHHHHHHHHHHHhc--CCeEEEEeCCCCCHHHHHHHH
Confidence            45899999999999999999999997  89999987621         111122111  12222211 1112   2122 


Q ss_pred             ------hCCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecCCCccc
Q 022947          112 ------LTGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNST  169 (289)
Q Consensus       112 ------l~~aDiVIitag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tNPvd~~  169 (289)
                            +...|++|.+||......   .+   -...+..|+.....+.+.+..+   .+.+.|++++......
T Consensus        82 ~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~  154 (274)
T 3e03_A           82 AATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLN  154 (274)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCCCC
T ss_pred             HHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHhcC
Confidence                  247899999999753221   11   2234566766555555544332   2457777777665443

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=97.07  E-value=0.0021  Score=60.24  Aligned_cols=71  Identities=24%  Similarity=0.464  Sum_probs=47.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCC-ccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~-~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      ++||+|+||+|++|..+...|...++ ..|+.++......|+...+..    ..+....  .+ .++++++|+||++.|
T Consensus         2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~~~~----~~~~~~~--~~-~~~~~~~Dvvf~a~~   73 (366)
T 3pwk_A            2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKD----QDITIEE--TT-ETAFEGVDIALFSAG   73 (366)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEEETT----EEEEEEE--CC-TTTTTTCSEEEECSC
T ss_pred             CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcceecC----CCceEee--CC-HHHhcCCCEEEECCC
Confidence            47999999999999999998887743 458888875544444333221    1222211  12 245889999999865

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.05  E-value=0.00052  Score=63.76  Aligned_cols=70  Identities=23%  Similarity=0.287  Sum_probs=45.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEE-EecCCCHHhhhCCCCEEEEcCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~eal~~aDiVIitag  123 (289)
                      +|||.|+|| |+||+.++..|... .  +|.+.|++.....  .+.+..  ..+.. ......+.+.++++|+||.+++
T Consensus        16 ~mkilvlGa-G~vG~~~~~~L~~~-~--~v~~~~~~~~~~~--~~~~~~--~~~~~d~~d~~~l~~~~~~~DvVi~~~p   86 (365)
T 3abi_A           16 HMKVLILGA-GNIGRAIAWDLKDE-F--DVYIGDVNNENLE--KVKEFA--TPLKVDASNFDKLVEVMKEFELVIGALP   86 (365)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHTTT-S--EEEEEESCHHHHH--HHTTTS--EEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             ccEEEEECC-CHHHHHHHHHHhcC-C--CeEEEEcCHHHHH--HHhccC--CcEEEecCCHHHHHHHHhCCCEEEEecC
Confidence            569999998 99999999888654 3  8999998752111  111111  11111 1112346677899999999864

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=97.04  E-value=0.001  Score=58.28  Aligned_cols=114  Identities=16%  Similarity=0.103  Sum_probs=66.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEe-cCC---CHHhh------hCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQ---QLEDA------LTGM  115 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~-~t~---d~~ea------l~~a  115 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|++.. ....++..     .+..+. +-+   +.++.      +...
T Consensus         9 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~-~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~g~i   80 (257)
T 3tl3_A            9 DAVAVVTGGASGLGLATTKRLLDAGA--QVVVLDIRGE-DVVADLGD-----RARFAAADVTDEAAVASALDLAETMGTL   80 (257)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSCH-HHHHHTCT-----TEEEEECCTTCHHHHHHHHHHHHHHSCE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCchH-HHHHhcCC-----ceEEEECCCCCHHHHHHHHHHHHHhCCC
Confidence            35799999999999999999999997  8999998541 11111111     111110 111   12222      3489


Q ss_pred             CEEEEcCCCCCC----------CCCchhhHHHhhHHHHHHHHHHHHHh-----------CCCcEEEEecCCCc
Q 022947          116 DIVIIPAGVPRK----------PGMTRDDLFNINAGIVKTLCEGIAKC-----------CPKAIVNLISNPVN  167 (289)
Q Consensus       116 DiVIitag~~~~----------~g~~r~d~~~~N~~i~~~i~~~i~~~-----------~p~aiviv~tNPvd  167 (289)
                      |++|.+||....          ..++..+.+..|+.....+.+.+..+           ...+.|+++|....
T Consensus        81 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~  153 (257)
T 3tl3_A           81 RIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAA  153 (257)
T ss_dssp             EEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC-
T ss_pred             CEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhh
Confidence            999999986421          01112345667766555555444432           23567777765543

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=96.10  E-value=9.6e-05  Score=63.38  Aligned_cols=92  Identities=13%  Similarity=0.113  Sum_probs=58.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      +.|||+|||+ |.+|+.++..|...|+  +|.++|+++.   ...+...    .+..   . ++.++++++|+||++...
T Consensus        18 ~~~~I~iIG~-G~mG~~la~~L~~~G~--~V~~~~r~~~---~~~~~~~----g~~~---~-~~~~~~~~aDvVilav~~   83 (201)
T 2yjz_A           18 KQGVVCIFGT-GDFGKSLGLKMLQCGY--SVVFGSRNPQ---VSSLLPR----GAEV---L-CYSEAASRSDVIVLAVHR   83 (201)
Confidence            3578999998 9999999999988886  8899987652   1111111    1111   2 345778999999998531


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd  167 (289)
                      .    ..            .++. .+....++.+|+.++|...
T Consensus        84 ~----~~------------~~v~-~l~~~~~~~ivI~~~~G~~  109 (201)
T 2yjz_A           84 E----HY------------DFLA-ELADSLKGRVLIDVSNNQK  109 (201)
Confidence            1    11            1111 1222335678888888773

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=97.02  E-value=0.003  Score=58.56  Aligned_cols=89  Identities=21%  Similarity=0.302  Sum_probs=58.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      ..++|+|||. |.+|+.+|..+...|.  +|..+|++....    .       ....   ..++++.+++||+|+++...
T Consensus       170 ~gktiGIIGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~----~-------~~~~---~~sl~ell~~aDvVil~vP~  232 (340)
T 4dgs_A          170 KGKRIGVLGL-GQIGRALASRAEAFGM--SVRYWNRSTLSG----V-------DWIA---HQSPVDLARDSDVLAVCVAA  232 (340)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSCCTT----S-------CCEE---CSSHHHHHHTCSEEEECC--
T ss_pred             cCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEcCCcccc----c-------Ccee---cCCHHHHHhcCCEEEEeCCC
Confidence            3569999998 9999999999998887  999999875321    0       0111   23678899999999998531


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      .  + +++        .++.  .+.+....|.+++++++
T Consensus       233 t--~-~t~--------~li~--~~~l~~mk~gailIN~a  258 (340)
T 4dgs_A          233 S--A-ATQ--------NIVD--ASLLQALGPEGIVVNVA  258 (340)
T ss_dssp             -------------------C--HHHHHHTTTTCEEEECS
T ss_pred             C--H-HHH--------HHhh--HHHHhcCCCCCEEEECC
Confidence            1  1 111        1110  12233445889999885

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=97.02  E-value=0.0029  Score=55.94  Aligned_cols=150  Identities=17%  Similarity=0.156  Sum_probs=83.1

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEe-cCCC----------HHhhhCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQ----------LEDALTGM  115 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~-~t~d----------~~eal~~a  115 (289)
                      ++|.|+||++-+|..++..|+..|.  .|++.|+++..  ..++....  .++..+. +-+|          ..+.+...
T Consensus         3 K~vlVTGas~GIG~aia~~la~~Ga--~V~~~~~~~~~--~~~~~~~~--~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~i   76 (247)
T 3ged_A            3 RGVIVTGGGHGIGKQICLDFLEAGD--KVCFIDIDEKR--SADFAKER--PNLFYFHGDVADPLTLKKFVEYAMEKLQRI   76 (247)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHH--HHHHHTTC--TTEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHhc--CCEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            4788999999999999999999997  99999998621  11111111  1111110 1111          12345789


Q ss_pred             CEEEEcCCCCCCC---CCc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCC
Q 022947          116 DIVIIPAGVPRKP---GMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (289)
Q Consensus       116 DiVIitag~~~~~---g~~---r~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~  185 (289)
                      |++|..||.....   ..+   -...+..|+..    .+...+.+.+.  .+.|++++.-...            .+.|.
T Consensus        77 DiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~--~G~IInisS~~~~------------~~~~~  142 (247)
T 3ged_A           77 DVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKN--KGRIINIASTRAF------------QSEPD  142 (247)
T ss_dssp             CEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEECCGGGT------------SCCTT
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhc--CCcEEEEeecccc------------cCCCC
Confidence            9999999875432   122   22345566543    45555555543  4677776543221            12222


Q ss_pred             CcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          186 KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       186 ~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                      .-.++.+.-.-.-|-+.+|.+++  | .|++-.+
T Consensus       143 ~~~Y~asKaal~~ltk~lA~ela--~-~IrVN~I  173 (247)
T 3ged_A          143 SEAYASAKGGIVALTHALAMSLG--P-DVLVNCI  173 (247)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHT--T-TSEEEEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHC--C-CCEEEEE
Confidence            11222222122345677888886  3 5665444

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=97.01  E-value=0.0012  Score=58.24  Aligned_cols=114  Identities=17%  Similarity=0.115  Sum_probs=67.7

Q ss_pred             CCEEEEEcC--CCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEE-ecCCC---HHhhhC------
Q 022947           46 GFKVAVLGA--AGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGF-LGQQQ---LEDALT------  113 (289)
Q Consensus        46 ~~KI~IIGa--aG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~-~~t~d---~~eal~------  113 (289)
                      .+++.|+||  +|.+|..++..|+..|.  +|++.|+++... ..++.... ..++..+ .+-+|   .++.++      
T Consensus         7 ~k~vlVTGa~~s~gIG~aia~~l~~~G~--~V~~~~r~~~~~-~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   82 (269)
T 2h7i_A            7 GKRILVSGIITDSSIAFHIARVAQEQGA--QLVLTGFDRLRL-IQRITDRL-PAKAPLLELDVQNEEHLASLAGRVTEAI   82 (269)
T ss_dssp             TCEEEECCCSSTTSHHHHHHHHHHHTTC--EEEEEECSCHHH-HHHHHTTS-SSCCCEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCchHHHHHHHHHHCCC--EEEEEecChHHH-HHHHHHhc-CCCceEEEccCCCHHHHHHHHHHHHHHh
Confidence            357999998  89999999999999997  899999876211 01111110 0011111 01112   222232      


Q ss_pred             ----CCCEEEEcCCCCCC------C--CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEec
Q 022947          114 ----GMDIVIIPAGVPRK------P--GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS  163 (289)
Q Consensus       114 ----~aDiVIitag~~~~------~--g~~---r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~t  163 (289)
                          ..|++|.+||....      +  ..+   ....+..|+.....+++.+.++- +.+.|+++|
T Consensus        83 g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  148 (269)
T 2h7i_A           83 GAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMD  148 (269)
T ss_dssp             CTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             CCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEc
Confidence                78999999997531      1  112   22356678777777777766542 345666665

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=97.01  E-value=0.001  Score=61.32  Aligned_cols=66  Identities=26%  Similarity=0.428  Sum_probs=48.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      ..+||+|||. |.+|..++..+...|.  +|+.+|++.......++   .    +. .   .++++.+++||+|+++...
T Consensus       149 ~g~~vgIIG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~---g----~~-~---~~l~~~l~~aDvVil~vp~  214 (334)
T 2dbq_A          149 YGKTIGIIGL-GRIGQAIAKRAKGFNM--RILYYSRTRKEEVEREL---N----AE-F---KPLEDLLRESDFVVLAVPL  214 (334)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHH---C----CE-E---CCHHHHHHHCSEEEECCCC
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHhCCC--EEEEECCCcchhhHhhc---C----cc-c---CCHHHHHhhCCEEEECCCC
Confidence            3569999998 9999999999998887  99999987643111111   1    11 1   2577889999999998643

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=97.01  E-value=0.0043  Score=56.75  Aligned_cols=134  Identities=16%  Similarity=0.171  Sum_probs=76.3

Q ss_pred             CCCEEEEEcCCCccHHH-HHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhh--CCCCEEEEc
Q 022947           45 PGFKVAVLGAAGGIGQP-LAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL--TGMDIVIIP  121 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~-la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal--~~aDiVIit  121 (289)
                      .++||.|||. |-.|.+ +|..|..+|.  +|.+.|..+.......|....  ..+.  .+ .+. +.+  .++|+||.+
T Consensus         3 ~~~~i~~iGi-Gg~Gms~~A~~L~~~G~--~V~~~D~~~~~~~~~~L~~~g--i~v~--~g-~~~-~~l~~~~~d~vV~S   73 (326)
T 3eag_A            3 AMKHIHIIGI-GGTFMGGLAAIAKEAGF--EVSGCDAKMYPPMSTQLEALG--IDVY--EG-FDA-AQLDEFKADVYVIG   73 (326)
T ss_dssp             CCCEEEEESC-CSHHHHHHHHHHHHTTC--EEEEEESSCCTTHHHHHHHTT--CEEE--ES-CCG-GGGGSCCCSEEEEC
T ss_pred             CCcEEEEEEE-CHHHHHHHHHHHHhCCC--EEEEEcCCCCcHHHHHHHhCC--CEEE--CC-CCH-HHcCCCCCCEEEEC
Confidence            3579999999 999996 8889999998  999999876221222333322  2222  22 233 445  489999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHH-hCCCcEEEEecCCCc--ccHHHHHHHHHHhCCCCCCcEEE
Q 022947          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAK-CCPKAIVNLISNPVN--STVPIAAEVFKKVGTYDPKRLLG  190 (289)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~-~~p~aiviv~tNPvd--~~t~~~~~~~~~~~~~~~~kviG  190 (289)
                      .|+|...- ......+.+++++.++ +.+.+ ...+..+|-+|-...  +.|.++.+++++. |+++.-++|
T Consensus        74 pgi~~~~p-~~~~a~~~gi~v~~~~-e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~-g~~~~~~~g  142 (326)
T 3eag_A           74 NVAKRGMD-VVEAILNLGLPYISGP-QWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYA-GLAPGFLIG  142 (326)
T ss_dssp             TTCCTTCH-HHHHHHHTTCCEEEHH-HHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHT-TCCCEEECS
T ss_pred             CCcCCCCH-HHHHHHHcCCcEEeHH-HHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHc-CCCceEEec
Confidence            88874321 1111223344443332 22222 123445556665555  5666666666653 554433333

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=97.00  E-value=0.0026  Score=55.12  Aligned_cols=117  Identities=19%  Similarity=0.149  Sum_probs=68.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-c--hhHHhhhhcccCCceEEEEe-cCCCH---HhhhC-----
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGVTADISHMDTNAVVRGFL-GQQQL---EDALT-----  113 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~--~g~~~DL~~~~~~~~v~~~~-~t~d~---~eal~-----  113 (289)
                      .+++.|+||+|.+|..++..|+..|.  .|++++... .  .....++....  ..+..+. +-+|.   ++.++     
T Consensus         7 ~k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (255)
T 3icc_A            7 GKVALVTGASRGIGRAIAKRLANDGA--LVAIHYGNRKEEAEETVYEIQSNG--GSAFSIGANLESLHGVEALYSSLDNE   82 (255)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCSHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHHHHHHhcC--CceEEEecCcCCHHHHHHHHHHHHHH
Confidence            45799999999999999999999997  787765433 2  22223333221  2222211 11121   11111     


Q ss_pred             --------CCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 022947          114 --------GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPV  166 (289)
Q Consensus       114 --------~aDiVIitag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPv  166 (289)
                              ..|++|.+||......   .+   -...+..|+.....+.+.+...- +.+.|+++|...
T Consensus        83 ~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~  150 (255)
T 3icc_A           83 LQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAA  150 (255)
T ss_dssp             HHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGG
T ss_pred             hcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChh
Confidence                    3899999999753221   11   12345677777776776665542 356677776543

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=97.00  E-value=0.0013  Score=61.13  Aligned_cols=66  Identities=20%  Similarity=0.233  Sum_probs=48.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHH-hCCCccEEEEEeCCCch-hHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~-~~g~~~eI~LvD~~~~~-g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      ..++|+|||. |.+|..++..+. ..|.  +|+.+|++... ....++.       +..   .+++++.+++||+|+++.
T Consensus       162 ~g~~vgIIG~-G~IG~~vA~~l~~~~G~--~V~~~d~~~~~~~~~~~~g-------~~~---~~~l~ell~~aDvVil~v  228 (348)
T 2w2k_A          162 RGHVLGAVGL-GAIQKEIARKAVHGLGM--KLVYYDVAPADAETEKALG-------AER---VDSLEELARRSDCVSVSV  228 (348)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCC--EEEEECSSCCCHHHHHHHT-------CEE---CSSHHHHHHHCSEEEECC
T ss_pred             CCCEEEEEEE-CHHHHHHHHHHHHhcCC--EEEEECCCCcchhhHhhcC-------cEE---eCCHHHHhccCCEEEEeC
Confidence            3468999998 999999999998 8887  89999987621 1111111       111   135778899999999986


Q ss_pred             C
Q 022947          123 G  123 (289)
Q Consensus       123 g  123 (289)
                      .
T Consensus       229 p  229 (348)
T 2w2k_A          229 P  229 (348)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=96.96  E-value=0.021  Score=50.53  Aligned_cols=115  Identities=19%  Similarity=0.243  Sum_probs=69.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEe-cCCC---HHhh--hCCCCEEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQ---LEDA--LTGMDIVI  119 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea--l~~aDiVI  119 (289)
                      .+.+.|+||++-+|..++..|+..|.  .|++.|++..+....++....  .+...+. +-+|   .++.  .-.-|++|
T Consensus         9 GKvalVTGas~GIG~aiA~~la~~Ga--~Vvi~~r~~~~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~g~iDiLV   84 (247)
T 4hp8_A            9 GRKALVTGANTGLGQAIAVGLAAAGA--EVVCAARRAPDETLDIIAKDG--GNASALLIDFADPLAAKDSFTDAGFDILV   84 (247)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHHHHHHHTT--CCEEEEECCTTSTTTTTTSSTTTCCCEEE
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHcCC--EEEEEeCCcHHHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHhCCCCEEE
Confidence            34677889999999999999999997  899999986432222222221  1111111 1111   1111  23579999


Q ss_pred             EcCCCCCCCC---Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 022947          120 IPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       120 itag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      ..||......   .+   ....+..|+.    ..+..++.|.+....+.||+++.
T Consensus        85 NNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS  139 (247)
T 4hp8_A           85 NNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIAS  139 (247)
T ss_dssp             ECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             ECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEec
Confidence            9999754321   12   2334566655    44666667766666678888764

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=96.96  E-value=0.0015  Score=56.68  Aligned_cols=109  Identities=17%  Similarity=0.163  Sum_probs=57.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch-hHHhhhhcccCCceEEEEec----------CCCHHhhhCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGFLG----------QQQLEDALTG  114 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~-g~~~DL~~~~~~~~v~~~~~----------t~d~~eal~~  114 (289)
                      .+++.|+||+|.+|..++..|+. +.  .|+++|+++.. ....++.      .+..+..          ..+..+.+..
T Consensus         5 ~k~vlITGas~gIG~~~a~~l~~-g~--~v~~~~r~~~~~~~~~~~~------~~~~~~~D~~~~~~~~~~~~~~~~~~~   75 (245)
T 3e9n_A            5 KKIAVVTGATGGMGIEIVKDLSR-DH--IVYALGRNPEHLAALAEIE------GVEPIESDIVKEVLEEGGVDKLKNLDH   75 (245)
T ss_dssp             -CEEEEESTTSHHHHHHHHHHTT-TS--EEEEEESCHHHHHHHHTST------TEEEEECCHHHHHHTSSSCGGGTTCSC
T ss_pred             CCEEEEEcCCCHHHHHHHHHHhC-CC--eEEEEeCCHHHHHHHHhhc------CCcceecccchHHHHHHHHHHHHhcCC
Confidence            35799999999999999999876 64  89999987521 1111111      1111100          0011123457


Q ss_pred             CCEEEEcCCCCCCCC---Cc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecCC
Q 022947          115 MDIVIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       115 aDiVIitag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~tNP  165 (289)
                      .|++|.+||......   .+   -...+..|+..    .+.+.+.+++..  +.++++|..
T Consensus        76 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--g~iv~isS~  134 (245)
T 3e9n_A           76 VDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS--GCVIYINSG  134 (245)
T ss_dssp             CSEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEC--
T ss_pred             CCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC--CeEEEEcCc
Confidence            999999998753221   11   12345556554    555555555543  566666543

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=96.91  E-value=0.0028  Score=58.29  Aligned_cols=66  Identities=17%  Similarity=0.200  Sum_probs=47.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      ..+||+|||. |.+|+.++..+...|.  +|+.+|++......  ....    .+..   . ++++.+++||+|+++..
T Consensus       154 ~g~~vgIIG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~--~~~~----g~~~---~-~l~e~l~~aDvVi~~vp  219 (330)
T 2gcg_A          154 TQSTVGIIGL-GRIGQAIARRLKPFGV--QRFLYTGRQPRPEE--AAEF----QAEF---V-STPELAAQSDFIVVACS  219 (330)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGTC--CEEEEESSSCCHHH--HHTT----TCEE---C-CHHHHHHHCSEEEECCC
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcchhH--HHhc----Ccee---C-CHHHHHhhCCEEEEeCC
Confidence            3569999998 9999999999988887  89999987521111  1111    1121   2 56788999999999864

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=96.90  E-value=0.0021  Score=62.17  Aligned_cols=117  Identities=18%  Similarity=0.140  Sum_probs=72.9

Q ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-----hhHHhhhhcccCCceEEEEe-cCC---CHHhhhC
Q 022947           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-----PGVTADISHMDTNAVVRGFL-GQQ---QLEDALT  113 (289)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-----~g~~~DL~~~~~~~~v~~~~-~t~---d~~eal~  113 (289)
                      +...++|.|+|++|.+|..++..|+..|. ..|++++++..     .....++...  ..++..+. +-+   ++.+.++
T Consensus       223 ~~~~~~vLITGgtGgIG~~la~~La~~G~-~~vvl~~R~~~~~~~~~~l~~~l~~~--g~~v~~~~~Dv~d~~~v~~~~~  299 (486)
T 2fr1_A          223 WKPTGTVLVTGGTGGVGGQIARWLARRGA-PHLLLVSRSGPDADGAGELVAELEAL--GARTTVAACDVTDRESVRELLG  299 (486)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHHTC-SEEEEEESSGGGSTTHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHcCC-CEEEEEcCCCCCcHHHHHHHHHHHhc--CCEEEEEEeCCCCHHHHHHHHH
Confidence            45567999999999999999999998885 35999998752     1112233322  12333321 112   2334455


Q ss_pred             CC------CEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          114 GM------DIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       114 ~a------DiVIitag~~~~~---g~~r---~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      ..      |.||++||.....   ..+.   ...+..|+.....+.+.+.+... ..|+++|
T Consensus       300 ~i~~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~-~~~V~~S  360 (486)
T 2fr1_A          300 GIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDL-TAFVLFS  360 (486)
T ss_dssp             TSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCC-SEEEEEE
T ss_pred             HHHhcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCCC-CEEEEEc
Confidence            54      9999999976432   1121   23456788888888888776533 4455554

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=96.87  E-value=0.0069  Score=55.14  Aligned_cols=115  Identities=19%  Similarity=0.272  Sum_probs=65.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCC---------C--chhHHhhhhcccCCceEEEEecCCCHH-----
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV---------N--TPGVTADISHMDTNAVVRGFLGQQQLE-----  109 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~---------~--~~g~~~DL~~~~~~~~v~~~~~t~d~~-----  109 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+.         .  ......++..... ..+.......+.+     
T Consensus         9 gk~~lVTGas~GIG~~~a~~La~~Ga--~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~-~~~~D~~~~~~~~~~~~~   85 (319)
T 1gz6_A            9 GRVVLVTGAGGGLGRAYALAFAERGA--LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGG-KAVANYDSVEAGEKLVKT   85 (319)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTC-EEEEECCCGGGHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCcccccccCCHHHHHHHHHHHHhhCC-eEEEeCCCHHHHHHHHHH
Confidence            35899999999999999999999997  89998863         1  1111223322110 0111111111221     


Q ss_pred             --hhhCCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecC
Q 022947          110 --DALTGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       110 --eal~~aDiVIitag~~~~~g---~~---r~d~~~~N~~i~----~~i~~~i~~~~p~aiviv~tN  164 (289)
                        +.+...|++|..||......   .+   -...+..|+...    +.+.+.+++.. .+.|+++|.
T Consensus        86 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~grIV~vsS  151 (319)
T 1gz6_A           86 ALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQN-YGRIIMTAS  151 (319)
T ss_dssp             HHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEECC
Confidence              22457899999999754321   12   223456676554    44444455443 456666653

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=96.86  E-value=0.0019  Score=60.17  Aligned_cols=94  Identities=23%  Similarity=0.310  Sum_probs=61.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-chhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      ..++|+|||. |.+|..+|..|...|.  +|+.+|++. ......++.       +..   ..++++.+++||+|+++..
T Consensus       163 ~gktvGIIG~-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~g-------~~~---~~~l~ell~~aDvV~l~~P  229 (351)
T 3jtm_A          163 EGKTIGTVGA-GRIGKLLLQRLKPFGC--NLLYHDRLQMAPELEKETG-------AKF---VEDLNEMLPKCDVIVINMP  229 (351)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGCC--EEEEECSSCCCHHHHHHHC-------CEE---CSCHHHHGGGCSEEEECSC
T ss_pred             cCCEEeEEEe-CHHHHHHHHHHHHCCC--EEEEeCCCccCHHHHHhCC-------CeE---cCCHHHHHhcCCEEEECCC
Confidence            3569999998 9999999999988887  899999875 222222211       111   2367889999999999863


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      ..  + +++. ++  |.       +.+....|.+++|+++.
T Consensus       230 lt--~-~t~~-li--~~-------~~l~~mk~gailIN~aR  257 (351)
T 3jtm_A          230 LT--E-KTRG-MF--NK-------ELIGKLKKGVLIVNNAR  257 (351)
T ss_dssp             CC--T-TTTT-CB--SH-------HHHHHSCTTEEEEECSC
T ss_pred             CC--H-HHHH-hh--cH-------HHHhcCCCCCEEEECcC
Confidence            21  1 1111 11  21       22344468999999863

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=96.85  E-value=0.017  Score=51.25  Aligned_cols=155  Identities=15%  Similarity=0.187  Sum_probs=87.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCceEEEEe-cCCC----------HHhhh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ----------LEDAL  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~~-~t~d----------~~eal  112 (289)
                      .+.+.|+||++-+|..++..|+..|.  .|+++|+++  .+..+.++....  .++..+. +-+|          ..+.+
T Consensus         7 gKvalVTGas~GIG~aiA~~la~~Ga--~Vv~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~~   82 (254)
T 4fn4_A            7 NKVVIVTGAGSGIGRAIAKKFALNDS--IVVAVELLEDRLNQIVQELRGMG--KEVLGVKADVSKKKDVEEFVRRTFETY   82 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            34688899999999999999999997  899999987  223334443322  1222111 1111          12335


Q ss_pred             CCCCEEEEcCCCCC--CC--CCc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhC
Q 022947          113 TGMDIVIIPAGVPR--KP--GMT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (289)
Q Consensus       113 ~~aDiVIitag~~~--~~--g~~---r~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~  181 (289)
                      ..-|++|..||...  .+  ..+   ....+..|+.    ..+..++.|.+.. .+.||+++.-....            
T Consensus        83 G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IVnisS~~g~~------------  149 (254)
T 4fn4_A           83 SRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQG-KGVIVNTASIAGIR------------  149 (254)
T ss_dssp             SCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTC------------
T ss_pred             CCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEechhhcC------------
Confidence            68999999999643  22  122   2234555544    5567777776654 57777776432211            


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       182 ~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                      +.|..-.++.+.-.-..|-+.+|.+++  +..|++-.+
T Consensus       150 ~~~~~~~Y~asKaal~~ltr~lA~ela--~~gIrVN~V  185 (254)
T 4fn4_A          150 GGFAGAPYTVAKHGLIGLTRSIAAHYG--DQGIRAVAV  185 (254)
T ss_dssp             SSSSCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHhh--hhCeEEEEE
Confidence            122111122222122345677788874  566665544

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=96.84  E-value=0.0054  Score=54.97  Aligned_cols=72  Identities=19%  Similarity=0.225  Sum_probs=44.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhC-CCccEEE-EEeCCCchhHHhhhhcccC--CceEEEEecCCCHHhhhCCCCEEEE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLH-LYDVVNTPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVII  120 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~-g~~~eI~-LvD~~~~~g~~~DL~~~~~--~~~v~~~~~t~d~~eal~~aDiVIi  120 (289)
                      ++|||+|+|++|.+|+.++..+... ++  +|+ .+|.++......|+.....  ...+..   ++|+++.++++|+||.
T Consensus         4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~--elva~~d~~~~~~~g~d~~~~~g~~~~~v~~---~~dl~~~l~~~DvVID   78 (273)
T 1dih_A            4 ANIRVAIAGAGGRMGRQLIQAALALEGV--QLGAALEREGSSLLGSDAGELAGAGKTGVTV---QSSLDAVKDDFDVFID   78 (273)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTE--ECCCEECCTTCTTCSCCTTCSSSSSCCSCCE---ESCSTTTTTSCSEEEE
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHhCCCC--EEEEEEecCchhhhhhhHHHHcCCCcCCcee---cCCHHHHhcCCCEEEE
Confidence            4579999999999999999877654 44  665 7787652111122221110  112222   2456677889999994


Q ss_pred             c
Q 022947          121 P  121 (289)
Q Consensus       121 t  121 (289)
                      .
T Consensus        79 f   79 (273)
T 1dih_A           79 F   79 (273)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=96.84  E-value=0.0047  Score=59.03  Aligned_cols=91  Identities=19%  Similarity=0.123  Sum_probs=62.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchh-HHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g-~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      .++|+|+|. |.+|..+|..|...|.  +|+.+|+++... .+.+  . .  .  ..    .++++++++||+|+.+.+.
T Consensus       211 GktVgIiG~-G~IG~~vA~~Lka~Ga--~Viv~D~~p~~a~~A~~--~-G--~--~~----~sL~eal~~ADVVilt~gt  276 (436)
T 3h9u_A          211 GKTACVCGY-GDVGKGCAAALRGFGA--RVVVTEVDPINALQAAM--E-G--Y--QV----LLVEDVVEEAHIFVTTTGN  276 (436)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHH--T-T--C--EE----CCHHHHTTTCSEEEECSSC
T ss_pred             CCEEEEEee-CHHHHHHHHHHHHCCC--EEEEECCChhhhHHHHH--h-C--C--ee----cCHHHHHhhCCEEEECCCC
Confidence            569999998 9999999999998887  899999876211 1111  1 1  1  11    2578999999999987553


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd  167 (289)
                      ..--+.                 +.+....|.++|++++++..
T Consensus       277 ~~iI~~-----------------e~l~~MK~gAIVINvgRg~v  302 (436)
T 3h9u_A          277 DDIITS-----------------EHFPRMRDDAIVCNIGHFDT  302 (436)
T ss_dssp             SCSBCT-----------------TTGGGCCTTEEEEECSSSGG
T ss_pred             cCccCH-----------------HHHhhcCCCcEEEEeCCCCC
Confidence            211111                 12334568999999987753

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=96.83  E-value=0.0084  Score=53.20  Aligned_cols=156  Identities=12%  Similarity=0.112  Sum_probs=88.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCceEEEEe-cCCC----------HHhhh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ----------LEDAL  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~~-~t~d----------~~eal  112 (289)
                      .+.+.|+||++-+|..++..|+..|.  .|++.|+++  ....+.++....  .+...+. +-+|          ..+.+
T Consensus         9 gKvalVTGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~l~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (255)
T 4g81_D            9 GKTALVTGSARGLGFAYAEGLAAAGA--RVILNDIRATLLAESVDTLTRKG--YDAHGVAFDVTDELAIEAAFSKLDAEG   84 (255)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHHTT
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence            34678889999999999999999997  899999986  222233343321  1122111 0011          12234


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCC
Q 022947          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~  182 (289)
                      ..-|++|..||......   .+   ....+..|+.    ..+..++.+.+....+.|++++.-....            +
T Consensus        85 G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~------------~  152 (255)
T 4g81_D           85 IHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQA------------A  152 (255)
T ss_dssp             CCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS------------B
T ss_pred             CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcC------------C
Confidence            57899999999754321   11   2234555654    4566777776666667888876433221            1


Q ss_pred             CCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       183 ~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                      .|..-.++.+.-.-..|-+.+|.+++  +..|++-.+
T Consensus       153 ~~~~~~Y~asKaal~~ltr~lA~ela--~~gIrVN~V  187 (255)
T 4g81_D          153 RPTVAPYTAAKGGIKMLTCSMAAEWA--QFNIQTNAI  187 (255)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHHhc--ccCeEEEEE
Confidence            22211222222122335677888874  566665544

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.82  E-value=0.003  Score=56.56  Aligned_cols=79  Identities=16%  Similarity=0.195  Sum_probs=51.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcc-cCCceEEEEecCCCHHhhhCCCCEEEEc
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHM-DTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~-~~~~~v~~~~~t~d~~eal~~aDiVIit  121 (289)
                      +.+++.|+|++|.+|..++..|+..|.  +|+++|++..  +..+.++... ............+++++.++++|+||.+
T Consensus       118 ~gk~vlVtGaaGGiG~aia~~L~~~G~--~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~DvlVn~  195 (287)
T 1lu9_A          118 KGKKAVVLAGTGPVGMRSAALLAGEGA--EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTA  195 (287)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEEC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHhCCEEEEC
Confidence            346899999779999999999999996  7999998752  2222233221 1011111111112355678899999999


Q ss_pred             CCCC
Q 022947          122 AGVP  125 (289)
Q Consensus       122 ag~~  125 (289)
                      +|..
T Consensus       196 ag~g  199 (287)
T 1lu9_A          196 GAIG  199 (287)
T ss_dssp             CCTT
T ss_pred             CCcc
Confidence            9754

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=96.81  E-value=0.0074  Score=56.43  Aligned_cols=72  Identities=18%  Similarity=0.217  Sum_probs=44.4

Q ss_pred             CCEEEEEcCCCccHHHHHH-HHHhCCC-ccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           46 GFKVAVLGAAGGIGQPLAM-LMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~-~L~~~g~-~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      |+||+|+||+|++|..+.. .|...++ ..+|+++..+. .|+...  +.. ...+.... ..+. +.++++|+||.+.|
T Consensus         1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s-~G~~v~--~~~-g~~i~~~~-~~~~-~~~~~~DvVf~a~g   74 (367)
T 1t4b_A            1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQ-LGQAAP--SFG-GTTGTLQD-AFDL-EALKALDIIVTCQG   74 (367)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSS-TTSBCC--GGG-TCCCBCEE-TTCH-HHHHTCSEEEECSC
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCC-CCCCcc--ccC-CCceEEEe-cCCh-HHhcCCCEEEECCC
Confidence            4699999999999999998 5555543 45888886653 333221  110 01122111 2233 44789999999865

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=96.80  E-value=0.0033  Score=55.49  Aligned_cols=150  Identities=15%  Similarity=0.153  Sum_probs=83.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEe-cCC------CHHhhhCCCCEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQ------QLEDALTGMDIV  118 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~-~t~------d~~eal~~aDiV  118 (289)
                      .+.+.|+||++-+|..++..|++.|.  +|++.|+++......  .    ..++..+. +-+      ..-+.+...|++
T Consensus        11 GK~alVTGas~GIG~aia~~la~~Ga--~Vv~~~~~~~~~~~~--~----~~~~~~~~~Dv~~~~~v~~~~~~~g~iDiL   82 (242)
T 4b79_A           11 GQQVLVTGGSSGIGAAIAMQFAELGA--EVVALGLDADGVHAP--R----HPRIRREELDITDSQRLQRLFEALPRLDVL   82 (242)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTSTTSC--C----CTTEEEEECCTTCHHHHHHHHHHCSCCSEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHhhh--h----cCCeEEEEecCCCHHHHHHHHHhcCCCCEE
Confidence            45889999999999999999999998  999999986211100  0    01111110 001      123456789999


Q ss_pred             EEcCCCCCCCC-Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEE
Q 022947          119 IIPAGVPRKPG-MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (289)
Q Consensus       119 Iitag~~~~~g-~~---r~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG  190 (289)
                      |..||..+... .+   ....+..|+.    ..+...+.+++.  .+.||+++.-....            +.|..-.++
T Consensus        83 VNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~--~G~IVnisS~~~~~------------~~~~~~~Y~  148 (242)
T 4b79_A           83 VNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQR--GGSILNIASMYSTF------------GSADRPAYS  148 (242)
T ss_dssp             EECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--CEEEEEECCGGGTS------------CCSSCHHHH
T ss_pred             EECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCeEEEEeeccccC------------CCCCCHHHH
Confidence            99999754221 11   2234455544    334555555543  47787776432111            122211122


Q ss_pred             eeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          191 VTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       191 ~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                      .+.-.-.-|-+.+|.+++  |..|++-.+
T Consensus       149 asKaav~~ltr~lA~Ela--~~gIrVNaV  175 (242)
T 4b79_A          149 ASKGAIVQLTRSLACEYA--AERIRVNAI  175 (242)
T ss_dssp             HHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhh--hcCeEEEEE
Confidence            221112335677788874  566665544

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=96.79  E-value=0.00025  Score=63.37  Aligned_cols=64  Identities=9%  Similarity=0.119  Sum_probs=36.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEE-EEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVL-HLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI-~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      +|||+|||+ |.+|..++..|... +  +| .++|+++..  ..++.... ..   .   +.++++.++++|+||++.
T Consensus         2 ~m~I~iIG~-G~mG~~la~~l~~~-~--~v~~v~~~~~~~--~~~~~~~~-g~---~---~~~~~~~~~~~DvVilav   66 (276)
T 2i76_A            2 SLVLNFVGT-GTLTRFFLECLKDR-Y--EIGYILSRSIDR--ARNLAEVY-GG---K---AATLEKHPELNGVVFVIV   66 (276)
T ss_dssp             --CCEEESC-CHHHHHHHHTTC-------CCCEECSSHHH--HHHHHHHT-CC---C---CCSSCCCCC---CEEECS
T ss_pred             CceEEEEeC-CHHHHHHHHHHHHc-C--cEEEEEeCCHHH--HHHHHHHc-CC---c---cCCHHHHHhcCCEEEEeC
Confidence            469999998 99999999887766 4  77 489887521  11121110 01   1   234556688999999985

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=96.78  E-value=0.01  Score=54.18  Aligned_cols=116  Identities=17%  Similarity=0.160  Sum_probs=65.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC---chhHHhhhhcc--cCCceEEEEe-cCC---CHHhhhC---
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHM--DTNAVVRGFL-GQQ---QLEDALT---  113 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~---~~g~~~DL~~~--~~~~~v~~~~-~t~---d~~eal~---  113 (289)
                      .++|.|+||+|.+|..++..|+..|.  +|++.+++.   ......++...  .....+..+. +-+   +.+++++   
T Consensus         5 ~k~vlVTGas~GIG~aia~~L~~~G~--~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~   82 (324)
T 3u9l_A            5 KKIILITGASSGFGRLTAEALAGAGH--RVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQII   82 (324)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHH
Confidence            35799999999999999999999998  888887753   11111111111  0011222211 111   2333333   


Q ss_pred             ----CCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHH----HHhCCCcEEEEecC
Q 022947          114 ----GMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISN  164 (289)
Q Consensus       114 ----~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i----~~~~p~aiviv~tN  164 (289)
                          ..|++|.+||.....   ..+   -...+..|+.....+.+.+    ++.. .+.|+++|.
T Consensus        83 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~-~g~iV~isS  146 (324)
T 3u9l_A           83 GEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQK-HGLLIWISS  146 (324)
T ss_dssp             HHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             HHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEec
Confidence                899999999964321   111   2335666766555554444    5443 456666654

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=96.78  E-value=0.0022  Score=58.45  Aligned_cols=93  Identities=24%  Similarity=0.278  Sum_probs=60.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      ..++|+|||. |.+|..++..+...|.  +|+.+|++.......++   .    +..    .++++.+++||+|+++...
T Consensus       141 ~g~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~---g----~~~----~~l~ell~~aDvV~l~~p~  206 (307)
T 1wwk_A          141 EGKTIGIIGF-GRIGYQVAKIANALGM--NILLYDPYPNEERAKEV---N----GKF----VDLETLLKESDVVTIHVPL  206 (307)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHT---T----CEE----CCHHHHHHHCSEEEECCCC
T ss_pred             CCceEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCCChhhHhhc---C----ccc----cCHHHHHhhCCEEEEecCC
Confidence            3569999998 9999999999988887  99999987633222211   1    111    1467889999999998532


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      .  + +++. ++  |    .   +.+....|.+++++++-
T Consensus       207 ~--~-~t~~-li--~----~---~~l~~mk~ga~lin~ar  233 (307)
T 1wwk_A          207 V--E-STYH-LI--N----E---ERLKLMKKTAILINTSR  233 (307)
T ss_dssp             S--T-TTTT-CB--C----H---HHHHHSCTTCEEEECSC
T ss_pred             C--h-HHhh-hc--C----H---HHHhcCCCCeEEEECCC
Confidence            2  1 1111 11  1    1   12333457899988753

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=96.77  E-value=0.0018  Score=60.15  Aligned_cols=93  Identities=22%  Similarity=0.311  Sum_probs=60.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      ..++|+|||. |.+|+.++..+...|.  +|+.+|.........++.       +..   ..++++.++.||+|+++...
T Consensus       167 ~g~tvGIIG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~g-------~~~---~~~l~ell~~aDvV~l~~P~  233 (347)
T 1mx3_A          167 RGETLGIIGL-GRVGQAVALRAKAFGF--NVLFYDPYLSDGVERALG-------LQR---VSTLQDLLFHSDCVTLHCGL  233 (347)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCTTHHHHHT-------CEE---CSSHHHHHHHCSEEEECCCC
T ss_pred             CCCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEECCCcchhhHhhcC-------Cee---cCCHHHHHhcCCEEEEcCCC
Confidence            3569999998 9999999999988887  899999865322221111       111   12567889999999998532


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      .  + .++. ++  |    .   +.+....|.+++++++
T Consensus       234 t--~-~t~~-li--~----~---~~l~~mk~gailIN~a  259 (347)
T 1mx3_A          234 N--E-HNHH-LI--N----D---FTVKQMRQGAFLVNTA  259 (347)
T ss_dssp             C--T-TCTT-SB--S----H---HHHTTSCTTEEEEECS
T ss_pred             C--H-HHHH-Hh--H----H---HHHhcCCCCCEEEECC
Confidence            2  1 1111 11  1    1   2233345788998885

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=96.77  E-value=0.0023  Score=59.58  Aligned_cols=75  Identities=24%  Similarity=0.207  Sum_probs=45.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCC-----CccEEEEEeCCCchhHHhhhhcccCC--ceEEEEecCCCHHhhhCCCCEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINP-----LVSVLHLYDVVNTPGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIV  118 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g-----~~~eI~LvD~~~~~g~~~DL~~~~~~--~~v~~~~~t~d~~eal~~aDiV  118 (289)
                      ++||+|+||+|.+|..+...|..++     .. ||+++-.....++..+-.+....  ..+....  .+ .++++++|+|
T Consensus         9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~-ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~--~~-~~~~~~~DvV   84 (352)
T 2nqt_A            9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRL-RIGALTAATSAGSTLGEHHPHLTPLAHRVVEP--TE-AAVLGGHDAV   84 (352)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSE-EEEEEEESSCTTSBGGGTCTTCGGGTTCBCEE--CC-HHHHTTCSEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCCCCccE-EEEEEECCCcCCCchhhhcccccccceeeecc--CC-HHHhcCCCEE
Confidence            5799999999999999999888777     33 67776432222222221111100  1111111  13 3568899999


Q ss_pred             EEcCCC
Q 022947          119 IIPAGV  124 (289)
Q Consensus       119 Iitag~  124 (289)
                      |++.|.
T Consensus        85 f~alg~   90 (352)
T 2nqt_A           85 FLALPH   90 (352)
T ss_dssp             EECCTT
T ss_pred             EECCCC
Confidence            998763

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=96.76  E-value=0.0025  Score=58.95  Aligned_cols=93  Identities=26%  Similarity=0.352  Sum_probs=60.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      ..++|+|||. |.+|..+|..+...|.  +|+.+|++.....+.++   .    +..    .++++.+++||+|+++...
T Consensus       164 ~g~tvgIIGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~---g----~~~----~~l~ell~~aDvV~l~~P~  229 (335)
T 2g76_A          164 NGKTLGILGL-GRIGREVATRMQSFGM--KTIGYDPIISPEVSASF---G----VQQ----LPLEEIWPLCDFITVHTPL  229 (335)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSSCHHHHHHT---T----CEE----CCHHHHGGGCSEEEECCCC
T ss_pred             CcCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEECCCcchhhhhhc---C----cee----CCHHHHHhcCCEEEEecCC
Confidence            3569999998 9999999999988786  99999987532221111   1    111    1567889999999998532


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      .  + .++. ++  |    .   +.+....|.+++++++-
T Consensus       230 t--~-~t~~-li--~----~---~~l~~mk~gailIN~ar  256 (335)
T 2g76_A          230 L--P-STTG-LL--N----D---NTFAQCKKGVRVVNCAR  256 (335)
T ss_dssp             C--T-TTTT-SB--C----H---HHHTTSCTTEEEEECSC
T ss_pred             C--H-HHHH-hh--C----H---HHHhhCCCCcEEEECCC
Confidence            2  1 1111 11  1    1   22344457899988764

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=96.75  E-value=0.0024  Score=55.88  Aligned_cols=35  Identities=23%  Similarity=0.245  Sum_probs=31.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++
T Consensus         5 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~   39 (260)
T 2qq5_A            5 GQVCVVTGASRGIGRGIALQLCKAGA--TVYITGRHL   39 (260)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            45799999999999999999999997  899999875

>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A

Probab=96.74  E-value=0.0063  Score=56.45  Aligned_cols=70  Identities=19%  Similarity=0.365  Sum_probs=46.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCC-CccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g-~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      +||+|+||+|++|..+...|..++ ...|+.++...+..|+...+..    ..+.... . + .+.++++|+||.+.|
T Consensus         2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~~~~~~----~~~~~~~-~-~-~~~~~~~Dvvf~a~~   72 (344)
T 3tz6_A            2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLAFRG----QEIEVED-A-E-TADPSGLDIALFSAG   72 (344)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCEEEETT----EEEEEEE-T-T-TSCCTTCSEEEECSC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCceeecC----CceEEEe-C-C-HHHhccCCEEEECCC
Confidence            699999999999999998888874 2347888876554444333221    1222211 1 2 245789999999865

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=96.72  E-value=0.011  Score=54.58  Aligned_cols=99  Identities=15%  Similarity=0.210  Sum_probs=56.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC---chhHHhhhhcc--cCCceEEEEecCCCHHhhh-CCCCEEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHM--DTNAVVRGFLGQQQLEDAL-TGMDIVI  119 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~---~~g~~~DL~~~--~~~~~v~~~~~t~d~~eal-~~aDiVI  119 (289)
                      |+||+|+||+|++|..+...|...+.+ |+..+...+   ..|+...-.+.  .....+.... ..+. +++ +++|+||
T Consensus         4 M~kv~IvGatG~vG~~l~~~L~~~p~~-el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~-~~~~-~~~~~~~Dvvf   80 (337)
T 3dr3_A            4 MLNTLIVGASGYAGAELVTYVNRHPHM-NITALTVSAQSNDAGKLISDLHPQLKGIVELPLQP-MSDI-SEFSPGVDVVF   80 (337)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTE-EEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEE-ESSG-GGTCTTCSEEE
T ss_pred             ceEEEEECCCChHHHHHHHHHHhCCCC-cEEEEEecCchhhcCCchHHhCccccCccceeEec-cCCH-HHHhcCCCEEE
Confidence            579999999999999999988886644 777665433   33332211111  0011122111 0023 456 8999999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCC
Q 022947          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       120 itag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNP  165 (289)
                      +|.+                ....+++++.+.+.  .+++|-.|.+
T Consensus        81 ~a~p----------------~~~s~~~~~~~~~~--g~~vIDlSa~  108 (337)
T 3dr3_A           81 LATA----------------HEVSHDLAPQFLEA--GCVVFDLSGA  108 (337)
T ss_dssp             ECSC----------------HHHHHHHHHHHHHT--TCEEEECSST
T ss_pred             ECCC----------------hHHHHHHHHHHHHC--CCEEEEcCCc
Confidence            9854                12234555555443  4566656655

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=96.69  E-value=0.007  Score=54.43  Aligned_cols=96  Identities=20%  Similarity=0.187  Sum_probs=63.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      ..++|+|||+ |.+|..++..+...|.  +|..+|++.....  ++....  ...  .. ..++++.++++|+|+++...
T Consensus       154 ~g~~v~IiG~-G~iG~~~a~~l~~~G~--~V~~~dr~~~~~~--~~~~~g--~~~--~~-~~~l~~~l~~aDvVi~~~p~  223 (293)
T 3d4o_A          154 HGANVAVLGL-GRVGMSVARKFAALGA--KVKVGARESDLLA--RIAEMG--MEP--FH-ISKAAQELRDVDVCINTIPA  223 (293)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSHHHHH--HHHHTT--SEE--EE-GGGHHHHTTTCSEEEECCSS
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEECCHHHHH--HHHHCC--Cee--cC-hhhHHHHhcCCCEEEECCCh
Confidence            3569999998 9999999999988887  8999998652111  111111  111  11 23567889999999998632


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec-CCCcc
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS-NPVNS  168 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t-NPvd~  168 (289)
                          +.     +  |.       +.+....|.+++++++ +|.++
T Consensus       224 ----~~-----i--~~-------~~l~~mk~~~~lin~ar~~~~~  250 (293)
T 3d4o_A          224 ----LV-----V--TA-------NVLAEMPSHTFVIDLASKPGGT  250 (293)
T ss_dssp             ----CC-----B--CH-------HHHHHSCTTCEEEECSSTTCSB
T ss_pred             ----HH-----h--CH-------HHHHhcCCCCEEEEecCCCCCC
Confidence                11     1  11       1233345789999987 77664

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=96.67  E-value=0.002  Score=58.94  Aligned_cols=88  Identities=23%  Similarity=0.247  Sum_probs=58.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      ..++|+|||. |.+|..++..+...|.  +|+.+|++.....      .      .    ..++++.+++||+|+++...
T Consensus       143 ~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~------~------~----~~~l~ell~~aDvV~l~~p~  203 (311)
T 2cuk_A          143 QGLTLGLVGM-GRIGQAVAKRALAFGM--RVVYHARTPKPLP------Y------P----FLSLEELLKEADVVSLHTPL  203 (311)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSSS------S------C----BCCHHHHHHHCSEEEECCCC
T ss_pred             CCCEEEEEEE-CHHHHHHHHHHHHCCC--EEEEECCCCcccc------c------c----cCCHHHHHhhCCEEEEeCCC
Confidence            3568999998 9999999999988887  8999998652111      0      0    12567889999999998532


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      .  + +++. ++  |.       +.+....|.+++++++.
T Consensus       204 ~--~-~t~~-li--~~-------~~l~~mk~ga~lin~sr  230 (311)
T 2cuk_A          204 T--P-ETHR-LL--NR-------ERLFAMKRGAILLNTAR  230 (311)
T ss_dssp             C--T-TTTT-CB--CH-------HHHTTSCTTCEEEECSC
T ss_pred             C--h-HHHh-hc--CH-------HHHhhCCCCcEEEECCC
Confidence            2  1 1111 11  11       12333457899988764

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=96.66  E-value=0.0041  Score=57.72  Aligned_cols=96  Identities=24%  Similarity=0.333  Sum_probs=62.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      .++|+|||. |.+|+.+|..+...|.  +|..+|+.........    .    ...   ..++++.+++||+|+++....
T Consensus       173 gktvGIIGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~----g----~~~---~~~l~ell~~sDvV~l~~Plt  238 (345)
T 4g2n_A          173 GRRLGIFGM-GRIGRAIATRARGFGL--AIHYHNRTRLSHALEE----G----AIY---HDTLDSLLGASDIFLIAAPGR  238 (345)
T ss_dssp             TCEEEEESC-SHHHHHHHHHHHTTTC--EEEEECSSCCCHHHHT----T----CEE---CSSHHHHHHTCSEEEECSCCC
T ss_pred             CCEEEEEEe-ChhHHHHHHHHHHCCC--EEEEECCCCcchhhhc----C----CeE---eCCHHHHHhhCCEEEEecCCC
Confidence            569999998 9999999999988887  9999998752211111    1    111   236788999999999985321


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec--CCCcc
Q 022947          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVNS  168 (289)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t--NPvd~  168 (289)
                        + +++. ++  |    .   +.+....|.+++|+++  ..+|.
T Consensus       239 --~-~T~~-li--~----~---~~l~~mk~gailIN~aRG~~vde  270 (345)
T 4g2n_A          239 --P-ELKG-FL--D----H---DRIAKIPEGAVVINISRGDLIND  270 (345)
T ss_dssp             --G-GGTT-CB--C----H---HHHHHSCTTEEEEECSCGGGBCH
T ss_pred             --H-HHHH-Hh--C----H---HHHhhCCCCcEEEECCCCchhCH
Confidence              1 1111 11  1    1   2234456899999986  34443

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=96.66  E-value=0.0051  Score=57.06  Aligned_cols=75  Identities=16%  Similarity=0.183  Sum_probs=43.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEE-eCCCchhHHhhhhcccC--------CceEEEEecCCCHHhhhCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNTPGVTADISHMDT--------NAVVRGFLGQQQLEDALTGM  115 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~Lv-D~~~~~g~~~DL~~~~~--------~~~v~~~~~t~d~~eal~~a  115 (289)
                      +++||+|+||+|.+|..++..|...+.. ||+.+ |.+...++..+-.+...        ...+.. .. .+. +.++++
T Consensus         3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~-elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~-~d~-~~~~~v   78 (350)
T 2ep5_A            3 DKIKVSLLGSTGMVGQKMVKMLAKHPYL-ELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPI-VS-TNY-EDHKDV   78 (350)
T ss_dssp             CCEEEEEESCSSHHHHHHHHHHTTCSSE-EEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBE-EC-SSG-GGGTTC
T ss_pred             CCcEEEEECcCCHHHHHHHHHHHhCCCc-EEEEEecChhhcCCCHHHhcCcccccccccCCceeEE-ee-CCH-HHhcCC
Confidence            4579999998899999999888766543 67666 33322222221111100        011111 11 133 456899


Q ss_pred             CEEEEcCC
Q 022947          116 DIVIIPAG  123 (289)
Q Consensus       116 DiVIitag  123 (289)
                      |+||++.|
T Consensus        79 DvVf~atp   86 (350)
T 2ep5_A           79 DVVLSALP   86 (350)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99999854

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=96.65  E-value=0.0032  Score=58.90  Aligned_cols=96  Identities=21%  Similarity=0.316  Sum_probs=62.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      .++|+|||. |.+|..+|..+...|.  +|+.+|.........+..       +. .   .++++.++.||+|+++....
T Consensus       176 gktvGIIGl-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~g-------~~-~---~~l~ell~~aDvV~l~~Plt  241 (365)
T 4hy3_A          176 GSEIGIVGF-GDLGKALRRVLSGFRA--RIRVFDPWLPRSMLEENG-------VE-P---ASLEDVLTKSDFIFVVAAVT  241 (365)
T ss_dssp             SSEEEEECC-SHHHHHHHHHHTTSCC--EEEEECSSSCHHHHHHTT-------CE-E---CCHHHHHHSCSEEEECSCSS
T ss_pred             CCEEEEecC-CcccHHHHHhhhhCCC--EEEEECCCCCHHHHhhcC-------ee-e---CCHHHHHhcCCEEEEcCcCC
Confidence            569999998 9999999998887777  999999865222211111       11 1   25778899999999985321


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec--CCCcc
Q 022947          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVNS  168 (289)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t--NPvd~  168 (289)
                        + +++. ++  |       .+.+....|.+++|+++  .++|.
T Consensus       242 --~-~T~~-li--~-------~~~l~~mk~gailIN~aRG~~vde  273 (365)
T 4hy3_A          242 --S-ENKR-FL--G-------AEAFSSMRRGAAFILLSRADVVDF  273 (365)
T ss_dssp             --C-C----CC--C-------HHHHHTSCTTCEEEECSCGGGSCH
T ss_pred             --H-HHHh-hc--C-------HHHHhcCCCCcEEEECcCCchhCH
Confidence              1 1111 11  1       12344556899999986  44554

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=96.65  E-value=0.034  Score=48.67  Aligned_cols=157  Identities=11%  Similarity=0.097  Sum_probs=83.1

Q ss_pred             CCEEEEEcCCC--ccHHHHHHHHHhCCCccEEEEEeCCCc-hhHH-hhhhcccCCceEEEEe-cCCCH----------Hh
Q 022947           46 GFKVAVLGAAG--GIGQPLAMLMKINPLVSVLHLYDVVNT-PGVT-ADISHMDTNAVVRGFL-GQQQL----------ED  110 (289)
Q Consensus        46 ~~KI~IIGaaG--~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~-~DL~~~~~~~~v~~~~-~t~d~----------~e  110 (289)
                      .+.+.|+||+|  -+|..+|..|++.|.  .|++.|+++. .... ..+.... ..++..+. +-++.          .+
T Consensus         6 gK~alVTGaa~~~GIG~aiA~~la~~Ga--~Vvi~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~   82 (256)
T 4fs3_A            6 NKTYVIMGIANKRSIAFGVAKVLDQLGA--KLVFTYRKERSRKELEKLLEQLN-QPEAHLYQIDVQSDEEVINGFEQIGK   82 (256)
T ss_dssp             TCEEEEECCCSTTCHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHGGGT-CSSCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC-CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            45788999866  699999999999997  9999999872 1122 2222221 11222111 11121          23


Q ss_pred             hhCCCCEEEEcCCCCCCC-------CCchhhH---HHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHH
Q 022947          111 ALTGMDIVIIPAGVPRKP-------GMTRDDL---FNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKK  179 (289)
Q Consensus       111 al~~aDiVIitag~~~~~-------g~~r~d~---~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~  179 (289)
                      .+-..|++|..+|.....       ..++.++   +..|.......++...... ..+.|+++|.-....          
T Consensus        83 ~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~~----------  152 (256)
T 4fs3_A           83 DVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEF----------  152 (256)
T ss_dssp             HHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGTS----------
T ss_pred             HhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEecccccc----------
Confidence            346899999999864221       1122222   2345444444455444444 457777776432211          


Q ss_pred             hCCCCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          180 VGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       180 ~~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                        +.|..-.++.+.---..|-+.+|.+++  |..|++-.+
T Consensus       153 --~~~~~~~Y~asKaal~~ltr~lA~Ela--~~gIrVN~V  188 (256)
T 4fs3_A          153 --AVQNYNVMGVAKASLEANVKYLALDLG--PDNIRVNAI  188 (256)
T ss_dssp             --CCTTTHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             --CcccchhhHHHHHHHHHHHHHHHHHhC--ccCeEEEEE
Confidence              122222222222122335667777774  566665544

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=96.63  E-value=0.0017  Score=59.35  Aligned_cols=115  Identities=12%  Similarity=0.094  Sum_probs=63.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcc----cCCceEEEEe-cCC---CHHhhhC---
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRGFL-GQQ---QLEDALT---  113 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~----~~~~~v~~~~-~t~---d~~eal~---  113 (289)
                      ++|.|+||+|.+|..++..|+..|.  +|++++++.  .......+...    ....++..+. +-+   ++++.++   
T Consensus         3 k~vlVTGas~GIG~ala~~L~~~G~--~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~   80 (327)
T 1jtv_A            3 TVVLITGCSSGIGLHLAVRLASDPS--QSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVT   80 (327)
T ss_dssp             EEEEESCCSSHHHHHHHHHHHTCTT--CCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--ceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHHh
Confidence            4789999999999999999999986  667776543  11111111110    0011222221 111   2333444   


Q ss_pred             --CCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHH----HHHhCCCcEEEEecC
Q 022947          114 --GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEG----IAKCCPKAIVNLISN  164 (289)
Q Consensus       114 --~aDiVIitag~~~~~g---~~---r~d~~~~N~~i~~~i~~~----i~~~~p~aiviv~tN  164 (289)
                        ..|++|.+||......   .+   -...+..|+.....+++.    +++.. .+.|+++|.
T Consensus        81 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~-~g~IV~isS  142 (327)
T 1jtv_A           81 EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRG-SGRVLVTGS  142 (327)
T ss_dssp             TSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEEE
T ss_pred             cCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEECC
Confidence              4899999998753211   11   223566676555555544    44433 456666654

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=96.63  E-value=0.0097  Score=56.77  Aligned_cols=91  Identities=19%  Similarity=0.233  Sum_probs=61.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchh-HHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g-~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      .++|+|+|. |.||..++..+...|.  +|+.+|+++... .+..  ..     ...    .++++++++||+||.+.|.
T Consensus       220 GktV~ViG~-G~IGk~vA~~Lra~Ga--~Viv~D~dp~ra~~A~~--~G-----~~v----~~Leeal~~ADIVi~atgt  285 (435)
T 3gvp_A          220 GKQVVVCGY-GEVGKGCCAALKAMGS--IVYVTEIDPICALQACM--DG-----FRL----VKLNEVIRQVDIVITCTGN  285 (435)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHH--TT-----CEE----CCHHHHTTTCSEEEECSSC
T ss_pred             CCEEEEEee-CHHHHHHHHHHHHCCC--EEEEEeCChhhhHHHHH--cC-----CEe----ccHHHHHhcCCEEEECCCC
Confidence            468999998 9999999999988887  899999876211 1111  11     111    2477899999999997543


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd  167 (289)
                      +   +.       .|.       +.+....|.+++++++.+-.
T Consensus       286 ~---~l-------I~~-------e~l~~MK~gailINvgrg~~  311 (435)
T 3gvp_A          286 K---NV-------VTR-------EHLDRMKNSCIVCNMGHSNT  311 (435)
T ss_dssp             S---CS-------BCH-------HHHHHSCTTEEEEECSSTTT
T ss_pred             c---cc-------CCH-------HHHHhcCCCcEEEEecCCCc
Confidence            2   11       011       12333468899999987743

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.62  E-value=0.0012  Score=62.50  Aligned_cols=76  Identities=24%  Similarity=0.190  Sum_probs=48.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCc-cEEEEEeCCCc--hhHHhhhhcccCCceEEEE----ecCCCHHhhhCC--CC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLV-SVLHLYDVVNT--PGVTADISHMDTNAVVRGF----LGQQQLEDALTG--MD  116 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~-~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~----~~t~d~~eal~~--aD  116 (289)
                      |+||+|+|| |.+|+.++..|++.+.. .+|++.|++..  ...+.++.... ...+...    ...+++++.+++  +|
T Consensus         1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~-~~~~~~~~~D~~d~~~l~~~l~~~~~D   78 (405)
T 4ina_A            1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKG-YGEIDITTVDADSIEELVALINEVKPQ   78 (405)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTT-CCCCEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhc-CCceEEEEecCCCHHHHHHHHHhhCCC
Confidence            469999999 99999999999988743 58999999862  22223332210 0112111    111345566776  89


Q ss_pred             EEEEcCC
Q 022947          117 IVIIPAG  123 (289)
Q Consensus       117 iVIitag  123 (289)
                      +||.++|
T Consensus        79 vVin~ag   85 (405)
T 4ina_A           79 IVLNIAL   85 (405)
T ss_dssp             EEEECSC
T ss_pred             EEEECCC
Confidence            9999986

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=96.57  E-value=0.0023  Score=58.93  Aligned_cols=91  Identities=21%  Similarity=0.284  Sum_probs=59.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      .++|+|||. |.+|+.+|..+...|.  +|+.+|++.....     ..   ...  +. ..++++.+++||+|+++.-. 
T Consensus       137 gktvGIiGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~-----~~---~~~--~~-~~~l~ell~~aDvV~l~lPl-  201 (324)
T 3evt_A          137 GQQLLIYGT-GQIGQSLAAKASALGM--HVIGVNTTGHPAD-----HF---HET--VA-FTATADALATANFIVNALPL-  201 (324)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSCCCCT-----TC---SEE--EE-GGGCHHHHHHCSEEEECCCC-
T ss_pred             CCeEEEECc-CHHHHHHHHHHHhCCC--EEEEECCCcchhH-----hH---hhc--cc-cCCHHHHHhhCCEEEEcCCC-
Confidence            569999998 9999999999998888  9999998752110     00   011  11 23567889999999998532 


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                       .+ +++. ++  |.       +.+....|.+++++++
T Consensus       202 -t~-~t~~-li--~~-------~~l~~mk~gailIN~a  227 (324)
T 3evt_A          202 -TP-TTHH-LF--ST-------ELFQQTKQQPMLINIG  227 (324)
T ss_dssp             -CG-GGTT-CB--SH-------HHHHTCCSCCEEEECS
T ss_pred             -ch-HHHH-hc--CH-------HHHhcCCCCCEEEEcC
Confidence             11 1111 11  11       2244456889999986

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=96.56  E-value=0.0084  Score=58.38  Aligned_cols=118  Identities=17%  Similarity=0.116  Sum_probs=70.4

Q ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-----hhHHhhhhcccCCceEEEEe-cCCC---HHhhhC
Q 022947           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-----PGVTADISHMDTNAVVRGFL-GQQQ---LEDALT  113 (289)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-----~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal~  113 (289)
                      +.+.++|.|+|++|.+|..++..|+..|. ..|++++++..     .....++...  ..++..+. +-+|   +.+.++
T Consensus       256 ~~~~~~vLITGgtGgIG~~lA~~La~~G~-~~vvl~~R~~~~~~~~~~l~~~l~~~--g~~v~~~~~Dvtd~~~v~~~~~  332 (511)
T 2z5l_A          256 WQPSGTVLITGGMGAIGRRLARRLAAEGA-ERLVLTSRRGPEAPGAAELAEELRGH--GCEVVHAACDVAERDALAALVT  332 (511)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTC-SEEEEEESSGGGSTTHHHHHHHHHTT--TCEEEEEECCSSCHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCC-cEEEEEecCCcccHHHHHHHHHHHhc--CCEEEEEEeCCCCHHHHHHHHh
Confidence            34567999999999999999999998885 35899988752     1112233322  22333321 1123   334444


Q ss_pred             --CCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          114 --GMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       114 --~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                        ..|+||++||.....   ..+   -...+..|+.....+.+.+.+..+...|+++|
T Consensus       333 ~~~ld~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~S  390 (511)
T 2z5l_A          333 AYPPNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFS  390 (511)
T ss_dssp             HSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEE
T ss_pred             cCCCcEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEe
Confidence              389999999975432   111   12345667777777776665441223344444

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=96.54  E-value=0.0031  Score=57.39  Aligned_cols=89  Identities=22%  Similarity=0.241  Sum_probs=59.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      ..++|+|||. |.+|+.+|..+...|.  +|+.+|++.. .   +    ..    .   ...++++.++.||+|+++...
T Consensus       123 ~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~dr~~~-~---~----~~----~---~~~~l~ell~~aDvV~l~~P~  184 (303)
T 1qp8_A          123 QGEKVAVLGL-GEIGTRVGKILAALGA--QVRGFSRTPK-E---G----PW----R---FTNSLEEALREARAAVCALPL  184 (303)
T ss_dssp             TTCEEEEESC-STHHHHHHHHHHHTTC--EEEEECSSCC-C---S----SS----C---CBSCSHHHHTTCSEEEECCCC
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCcc-c---c----Cc----c---cCCCHHHHHhhCCEEEEeCcC
Confidence            4569999998 9999999999988887  8999998653 1   1    10    0   113567889999999998532


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      .  + +++. ++  |    .   +.+....|.+++++++.
T Consensus       185 ~--~-~t~~-~i--~----~---~~l~~mk~gailin~sr  211 (303)
T 1qp8_A          185 N--K-HTRG-LV--K----Y---QHLALMAEDAVFVNVGR  211 (303)
T ss_dssp             S--T-TTTT-CB--C----H---HHHTTSCTTCEEEECSC
T ss_pred             c--h-HHHH-Hh--C----H---HHHhhCCCCCEEEECCC
Confidence            2  1 1111 11  1    1   22334458899998864

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=96.54  E-value=0.021  Score=49.77  Aligned_cols=115  Identities=13%  Similarity=0.139  Sum_probs=65.7

Q ss_pred             CCEEEEEcCC--CccHHHHHHHHHhCCCccEEEEEeCCCc---hhHHhhhhcccCCceEEEEe-cCCC---HHhh-----
Q 022947           46 GFKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFL-GQQQ---LEDA-----  111 (289)
Q Consensus        46 ~~KI~IIGaa--G~VGs~la~~L~~~g~~~eI~LvD~~~~---~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea-----  111 (289)
                      .+++.|+||+  |.+|..++..|+..|.  .|+++|.+..   .....++.... ..++..+. +-+|   .++.     
T Consensus        20 ~k~vlITGas~~~giG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~   96 (267)
T 3gdg_A           20 GKVVVVTGASGPKGMGIEAARGCAEMGA--AVAITYASRAQGAEENVKELEKTY-GIKAKAYKCQVDSYESCEKLVKDVV   96 (267)
T ss_dssp             TCEEEETTCCSSSSHHHHHHHHHHHTSC--EEEECBSSSSSHHHHHHHHHHHHH-CCCEECCBCCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCChHHHHHHHHHHCCC--eEEEEeCCcchhHHHHHHHHHHhc-CCceeEEecCCCCHHHHHHHHHHHH
Confidence            3589999998  7999999999999997  8999988762   22233333211 11222111 1111   2222     


Q ss_pred             --hCCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecC
Q 022947          112 --LTGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       112 --l~~aDiVIitag~~~~~g---~~---r~d~~~~N~~i~----~~i~~~i~~~~p~aiviv~tN  164 (289)
                        +...|++|.+||......   .+   -...+..|+...    +.+.+.+++.. .+.|++++.
T Consensus        97 ~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS  160 (267)
T 3gdg_A           97 ADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERG-TGSLVITAS  160 (267)
T ss_dssp             HHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcC-CceEEEEcc
Confidence              346799999999754321   12   223455665544    44444445544 455666554

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=96.53  E-value=0.0028  Score=62.05  Aligned_cols=64  Identities=27%  Similarity=0.353  Sum_probs=47.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      .++|+|||. |.+|+.+|..|...|.  +|+.+|.+.....+.++.       +..   . ++++.+++||+|+++..
T Consensus       142 g~~vgIIG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~g-------~~~---~-~l~e~~~~aDvV~l~~P  205 (529)
T 1ygy_A          142 GKTVGVVGL-GRIGQLVAQRIAAFGA--YVVAYDPYVSPARAAQLG-------IEL---L-SLDDLLARADFISVHLP  205 (529)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCHHHHHHHT-------CEE---C-CHHHHHHHCSEEEECCC
T ss_pred             CCEEEEEee-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhcC-------cEE---c-CHHHHHhcCCEEEECCC
Confidence            569999998 9999999999998887  999999876322222221       111   1 46788999999999863

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=96.51  E-value=0.059  Score=47.70  Aligned_cols=154  Identities=16%  Similarity=0.104  Sum_probs=84.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhH-HhhhhcccCCceEEEEe-cCCC----------HHhhhC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TADISHMDTNAVVRGFL-GQQQ----------LEDALT  113 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~-~~DL~~~~~~~~v~~~~-~t~d----------~~eal~  113 (289)
                      .+.+.|+||++-+|..++..|+..|.  .|++.|+++.... ..++.....  +...+. +-+|          ..+.+-
T Consensus         7 gKvalVTGas~GIG~aia~~la~~Ga--~Vv~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~v~~~~~~~G   82 (258)
T 4gkb_A            7 DKVVIVTGGASGIGGAISMRLAEERA--IPVVFARHAPDGAFLDALAQRQP--RATYLPVELQDDAQCRDAVAQTIATFG   82 (258)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCCHHHHHHHHHHCT--TCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCcccHHHHHHHHhcCC--CEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            35788999999999999999999997  8999999873222 222222111  111110 0111          123356


Q ss_pred             CCCEEEEcCCCCCCCC--Cchh---hHHHhhHH----HHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCC
Q 022947          114 GMDIVIIPAGVPRKPG--MTRD---DLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (289)
Q Consensus       114 ~aDiVIitag~~~~~g--~~r~---d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~  184 (289)
                      .-|++|..||......  .+..   ..+..|+.    ..+...+.+++.  .+.||+++.-...            .+.|
T Consensus        83 ~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~--~G~IVnisS~~~~------------~~~~  148 (258)
T 4gkb_A           83 RLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKAT--RGAIVNISSKTAV------------TGQG  148 (258)
T ss_dssp             CCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECCTHHH------------HCCS
T ss_pred             CCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCeEEEEeehhhc------------cCCC
Confidence            8999999999754332  2222   23445543    456666666544  3677776542211            1233


Q ss_pred             CCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       185 ~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                      ..-.++.+.-.-.-|-+.+|.+++  +..|++-.+
T Consensus       149 ~~~~Y~asKaav~~ltr~lA~ela--~~gIrVN~V  181 (258)
T 4gkb_A          149 NTSGYCASKGAQLALTREWAVALR--EHGVRVNAV  181 (258)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhc--ccCeEEEEE
Confidence            322233332222345677788874  455554433

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=96.50  E-value=0.011  Score=47.34  Aligned_cols=85  Identities=9%  Similarity=0.085  Sum_probs=53.8

Q ss_pred             CCCEEEEEcCC---CccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEc
Q 022947           45 PGFKVAVLGAA---GGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (289)
Q Consensus        45 ~~~KI~IIGaa---G~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIit  121 (289)
                      ++.+|+|||+|   |.+|..++..|...|+  +|+-+|...  ..   +.      .+..+   .++.+...++|+++++
T Consensus        13 ~p~~IavIGaS~~~g~~G~~~~~~L~~~G~--~V~~vnp~~--~~---i~------G~~~~---~s~~el~~~vDlvii~   76 (138)
T 1y81_A           13 EFRKIALVGASKNPAKYGNIILKDLLSKGF--EVLPVNPNY--DE---IE------GLKCY---RSVRELPKDVDVIVFV   76 (138)
T ss_dssp             -CCEEEEETCCSCTTSHHHHHHHHHHHTTC--EEEEECTTC--SE---ET------TEECB---SSGGGSCTTCCEEEEC
T ss_pred             CCCeEEEEeecCCCCCHHHHHHHHHHHCCC--EEEEeCCCC--Ce---EC------Ceeec---CCHHHhCCCCCEEEEE
Confidence            45699999976   8999999999999998  654444322  11   11      11212   2454555789999998


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEE
Q 022947          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL  161 (289)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv  161 (289)
                      ..                .+.+.++++.+.+....++++.
T Consensus        77 vp----------------~~~v~~v~~~~~~~g~~~i~~~  100 (138)
T 1y81_A           77 VP----------------PKVGLQVAKEAVEAGFKKLWFQ  100 (138)
T ss_dssp             SC----------------HHHHHHHHHHHHHTTCCEEEEC
T ss_pred             eC----------------HHHHHHHHHHHHHcCCCEEEEc
Confidence            42                2455666666666666665543

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=96.50  E-value=0.0034  Score=57.80  Aligned_cols=65  Identities=26%  Similarity=0.351  Sum_probs=48.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      ..++|+|||. |.+|+.+|..+...|.  +|+.+|++.......++       .+..   . ++++.+++||+|+++..
T Consensus       145 ~g~~vgIIG~-G~iG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~-------g~~~---~-~l~e~l~~aDiVil~vp  209 (333)
T 2d0i_A          145 YGKKVGILGM-GAIGKAIARRLIPFGV--KLYYWSRHRKVNVEKEL-------KARY---M-DIDELLEKSDIVILALP  209 (333)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGTC--EEEEECSSCCHHHHHHH-------TEEE---C-CHHHHHHHCSEEEECCC
T ss_pred             CcCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCcchhhhhhc-------Ccee---c-CHHHHHhhCCEEEEcCC
Confidence            3568999998 9999999999988887  99999987643111111       1121   2 56788999999999864

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=96.50  E-value=0.012  Score=56.47  Aligned_cols=116  Identities=22%  Similarity=0.258  Sum_probs=70.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEE--EecCCCHHhhh-------CC-C
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG--FLGQQQLEDAL-------TG-M  115 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~--~~~t~d~~eal-------~~-a  115 (289)
                      .+.+.|+|++|.+|..++..|+..|.  +|+++|++.......++.... ......  ++...+.++.+       .+ .
T Consensus       213 gk~~LVTGgsgGIG~aiA~~La~~Ga--~Vvl~~r~~~~~~l~~~~~~~-~~~~~~~Dvtd~~~v~~~~~~~~~~~g~~i  289 (454)
T 3u0b_A          213 GKVAVVTGAARGIGATIAEVFARDGA--TVVAIDVDGAAEDLKRVADKV-GGTALTLDVTADDAVDKITAHVTEHHGGKV  289 (454)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEECGGGHHHHHHHHHHH-TCEEEECCTTSTTHHHHHHHHHHHHSTTCC
T ss_pred             CCEEEEeCCchHHHHHHHHHHHHCCC--EEEEEeCCccHHHHHHHHHHc-CCeEEEEecCCHHHHHHHHHHHHHHcCCCc
Confidence            45899999999999999999999997  899999865221111111110 001110  11111222222       23 9


Q ss_pred             CEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHhC---CCcEEEEecC
Q 022947          116 DIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCC---PKAIVNLISN  164 (289)
Q Consensus       116 DiVIitag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~~---p~aiviv~tN  164 (289)
                      |+||++||.....   ..+   -...+..|+.....+.+.+....   +.+.|+++|.
T Consensus       290 d~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS  347 (454)
T 3u0b_A          290 DILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSS  347 (454)
T ss_dssp             SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECC
T ss_pred             eEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeC
Confidence            9999999986432   122   22456778888887887776642   4567777664

>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*

Probab=96.49  E-value=0.0029  Score=59.10  Aligned_cols=72  Identities=17%  Similarity=0.287  Sum_probs=44.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHh-hhh----ccc-----CCceEEEEecCCCHHhhhCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA-DIS----HMD-----TNAVVRGFLGQQQLEDALTGM  115 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~-DL~----~~~-----~~~~v~~~~~t~d~~eal~~a  115 (289)
                      ++||+|+||+|++|..+...|...+.. ||..+...+..|+.. +..    +..     ....+..    .+. +.+.++
T Consensus         7 ~~kVaIvGATGyvG~eLlrlL~~hP~~-el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~----~~~-~~~~~v   80 (359)
T 4dpk_A            7 TLKAAILGATGLVGIEYVRMLSNHPYI-KPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKP----TDP-KLMDDV   80 (359)
T ss_dssp             CEEEEETTTTSTTHHHHHHHHTTCSSE-EEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEE----CCG-GGCTTC
T ss_pred             CCeEEEECCCCHHHHHHHHHHHhCCCc-eEEEEECchhcCCChhHhcccccccccccccccceEEe----CCH-HHhcCC
Confidence            569999999999999999877776643 777775444333322 110    000     0112221    132 467899


Q ss_pred             CEEEEcCC
Q 022947          116 DIVIIPAG  123 (289)
Q Consensus       116 DiVIitag  123 (289)
                      |+||++.|
T Consensus        81 Dvvf~a~p   88 (359)
T 4dpk_A           81 DIIFSPLP   88 (359)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999865

>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*

Probab=96.49  E-value=0.0029  Score=59.10  Aligned_cols=72  Identities=17%  Similarity=0.287  Sum_probs=44.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHh-hhh----ccc-----CCceEEEEecCCCHHhhhCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA-DIS----HMD-----TNAVVRGFLGQQQLEDALTGM  115 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~-DL~----~~~-----~~~~v~~~~~t~d~~eal~~a  115 (289)
                      ++||+|+||+|++|..+...|...+.. ||..+...+..|+.. +..    +..     ....+..    .+. +.+.++
T Consensus         7 ~~kVaIvGATGyvG~eLlrlL~~hP~~-el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~----~~~-~~~~~v   80 (359)
T 4dpl_A            7 TLKAAILGATGLVGIEYVRMLSNHPYI-KPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKP----TDP-KLMDDV   80 (359)
T ss_dssp             CEEEEETTTTSTTHHHHHHHHTTCSSE-EEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEE----CCG-GGCTTC
T ss_pred             CCeEEEECCCCHHHHHHHHHHHhCCCc-eEEEEECchhcCCChhHhcccccccccccccccceEEe----CCH-HHhcCC
Confidence            569999999999999999877776643 777775444333322 110    000     0112221    132 467899


Q ss_pred             CEEEEcCC
Q 022947          116 DIVIIPAG  123 (289)
Q Consensus       116 DiVIitag  123 (289)
                      |+||++.|
T Consensus        81 Dvvf~a~p   88 (359)
T 4dpl_A           81 DIIFSPLP   88 (359)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999865

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=96.49  E-value=0.0031  Score=58.74  Aligned_cols=76  Identities=16%  Similarity=0.126  Sum_probs=47.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      .+.||+|+||+|++|.-+...|...+.+ ||.++...+..|+..+-.+......+...  ..+.++.+.++|+||++.+
T Consensus        12 ~~~~V~IvGAtG~vG~ellrlL~~hP~~-el~~l~S~~~aG~~~~~~~p~~~~~l~~~--~~~~~~~~~~~Dvvf~alp   87 (351)
T 1vkn_A           12 HMIRAGIIGATGYTGLELVRLLKNHPEA-KITYLSSRTYAGKKLEEIFPSTLENSILS--EFDPEKVSKNCDVLFTALP   87 (351)
T ss_dssp             CCEEEEEESTTSHHHHHHHHHHHHCTTE-EEEEEECSTTTTSBHHHHCGGGCCCCBCB--CCCHHHHHHHCSEEEECCS
T ss_pred             ceeEEEEECCCCHHHHHHHHHHHcCCCc-EEEEEeCcccccCChHHhChhhccCceEE--eCCHHHhhcCCCEEEECCC
Confidence            4669999999999999999999988754 88888764444443321111100122211  1233332388999999865

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=96.49  E-value=0.0085  Score=56.33  Aligned_cols=75  Identities=24%  Similarity=0.335  Sum_probs=44.1

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEE-eCCCchhHHh-hhhccc---------CCceEEEEecCCCHHhhh
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNTPGVTA-DISHMD---------TNAVVRGFLGQQQLEDAL  112 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~Lv-D~~~~~g~~~-DL~~~~---------~~~~v~~~~~t~d~~eal  112 (289)
                      ++++||+|+||+|++|..+...|...+.+ ||..+ ...+..|+.. |.....         ....+..   . +..+.+
T Consensus        17 M~~~kVaIvGAtG~vG~ell~lL~~hp~~-el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~---~-~~~~~~   91 (381)
T 3hsk_A           17 MSVKKAGVLGATGSVGQRFILLLSKHPEF-EIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQE---C-KPEGNF   91 (381)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCSSE-EEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEE---S-SSCTTG
T ss_pred             CCccEEEEECCCChHHHHHHHHHHcCCCc-eEEEeeccccccCCCHHHhcccccccccccccccceEEe---C-chhhhc
Confidence            34579999999999999999888777644 77544 3333333322 211000         0112222   1 111257


Q ss_pred             CCCCEEEEcCC
Q 022947          113 TGMDIVIIPAG  123 (289)
Q Consensus       113 ~~aDiVIitag  123 (289)
                      +++|+||++.+
T Consensus        92 ~~~Dvvf~alp  102 (381)
T 3hsk_A           92 LECDVVFSGLD  102 (381)
T ss_dssp             GGCSEEEECCC
T ss_pred             ccCCEEEECCC
Confidence            89999999854

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=96.48  E-value=0.011  Score=58.63  Aligned_cols=114  Identities=16%  Similarity=0.152  Sum_probs=59.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeC---------CC--chhHHhhhhcccCCceEEEEecCCCHHhhh---
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV---------VN--TPGVTADISHMDTNAVVRGFLGQQQLEDAL---  112 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~---------~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~eal---  112 (289)
                      +.+.|+||+|.+|..++..|+..|.  .|++.|+         +.  ......++..... ..+.......+.++.+   
T Consensus        20 k~~lVTGas~GIG~aiA~~La~~Ga--~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~D~~d~~~~~~~~~~~   96 (613)
T 3oml_A           20 RVAVVTGAGAGLGREYALLFAERGA--KVVVNDLGGTHSGDGASQRAADIVVDEIRKAGG-EAVADYNSVIDGAKVIETA   96 (613)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEC--------------CHHHHHHHHHHTTC-CEEECCCCGGGHHHHHC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcccccccCCHHHHHHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHH
Confidence            4788999999999999999999997  8999987         22  1122223332211 1111111111222333   


Q ss_pred             ----CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHH----HHHHHhCCCcEEEEecC
Q 022947          113 ----TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLC----EGIAKCCPKAIVNLISN  164 (289)
Q Consensus       113 ----~~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~~~i~----~~i~~~~p~aiviv~tN  164 (289)
                          ...|++|.+||.....   ..+   -...+..|+.....+.    +.|++. ..+.||++|.
T Consensus        97 ~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~-~~g~IV~isS  161 (613)
T 3oml_A           97 IKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQ-NYGRIIMTSS  161 (613)
T ss_dssp             --------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCEEEEEECC
T ss_pred             HHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEECC
Confidence                3689999999975432   122   2234566765544444    444443 3466776654

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=96.47  E-value=0.014  Score=56.71  Aligned_cols=67  Identities=13%  Similarity=0.211  Sum_probs=43.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhC------CCccEEEEEeCCC--chhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEE
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKIN------PLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIV  118 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~------g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiV  118 (289)
                      +||+|||. |.+|.+++..|...      |+  +|++.+...  ....+.+..-......      ..+..+++++||+|
T Consensus        55 KkIgIIGl-GsMG~AmA~nLr~s~~~~g~G~--~ViVg~r~~sks~e~A~e~G~~v~d~t------a~s~aEAa~~ADVV  125 (525)
T 3fr7_A           55 KQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKIGLRKGSKSFDEARAAGFTEESGT------LGDIWETVSGSDLV  125 (525)
T ss_dssp             SEEEEECC-TTHHHHHHHHHHHHHHHTTCCC--EEEEEECTTCSCHHHHHHTTCCTTTTC------EEEHHHHHHHCSEE
T ss_pred             CEEEEEeE-hHHHHHHHHHHHhcccccCCCC--EEEEEeCCchhhHHHHHHCCCEEecCC------CCCHHHHHhcCCEE
Confidence            69999998 99999999999887      77  666555433  2222222211100000      12467899999999


Q ss_pred             EEcC
Q 022947          119 IIPA  122 (289)
Q Consensus       119 Iita  122 (289)
                      |++.
T Consensus       126 ILaV  129 (525)
T 3fr7_A          126 LLLI  129 (525)
T ss_dssp             EECS
T ss_pred             EECC
Confidence            9985

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.47  E-value=0.0026  Score=61.04  Aligned_cols=72  Identities=14%  Similarity=0.081  Sum_probs=47.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEe-cC---CCHHhhhCCCCEEEEc
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQ---QQLEDALTGMDIVIIP  121 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~-~t---~d~~eal~~aDiVIit  121 (289)
                      +++|.|+|+ |++|..++..|+..|.  +|+++|++...  +.++....  ..+..+. ..   .++.++++++|+||++
T Consensus         3 ~k~VlViGa-G~iG~~ia~~L~~~G~--~V~v~~R~~~~--a~~la~~~--~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~   75 (450)
T 1ff9_A            3 TKSVLMLGS-GFVTRPTLDVLTDSGI--KVTVACRTLES--AKKLSAGV--QHSTPISLDVNDDAALDAEVAKHDLVISL   75 (450)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHTTTC--EEEEEESSHHH--HHHTTTTC--TTEEEEECCTTCHHHHHHHHTTSSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCcC--EEEEEECCHHH--HHHHHHhc--CCceEEEeecCCHHHHHHHHcCCcEEEEC
Confidence            468999996 9999999999998886  89999987522  22222111  1111110 11   2345678999999999


Q ss_pred             CCC
Q 022947          122 AGV  124 (289)
Q Consensus       122 ag~  124 (289)
                      ++.
T Consensus        76 a~~   78 (450)
T 1ff9_A           76 IPY   78 (450)
T ss_dssp             CC-
T ss_pred             Ccc
Confidence            874

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=96.44  E-value=0.0055  Score=55.75  Aligned_cols=70  Identities=14%  Similarity=0.243  Sum_probs=47.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhC-CCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~-g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      ..++|+|||+ |.+|..++..|+.. + ..+|.++|+++...  .++.... ...+..   .++++++++++|+||++.
T Consensus       134 ~~~~igiIG~-G~~g~~~a~~l~~~~g-~~~V~v~dr~~~~~--~~l~~~~-~~~~~~---~~~~~e~v~~aDiVi~at  204 (312)
T 2i99_A          134 SSEVLCILGA-GVQAYSHYEIFTEQFS-FKEVRIWNRTKENA--EKFADTV-QGEVRV---CSSVQEAVAGADVIITVT  204 (312)
T ss_dssp             TCCEEEEECC-SHHHHHHHHHHHHHCC-CSEEEEECSSHHHH--HHHHHHS-SSCCEE---CSSHHHHHTTCSEEEECC
T ss_pred             CCcEEEEECC-cHHHHHHHHHHHHhCC-CcEEEEEcCCHHHH--HHHHHHh-hCCeEE---eCCHHHHHhcCCEEEEEe
Confidence            4569999998 99999999887764 5 35899999875221  1222110 001222   246788899999999985

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=96.44  E-value=0.0046  Score=58.40  Aligned_cols=94  Identities=19%  Similarity=0.226  Sum_probs=60.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-chhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      ..++|+|||. |.+|+.+|..+...|.  +|+.+|+.. ......++.       +..   ..++++.++.||+|+++..
T Consensus       190 ~gktvGIIGl-G~IG~~vA~~l~a~G~--~V~~~d~~~~~~~~~~~~G-------~~~---~~~l~ell~~aDvV~l~~P  256 (393)
T 2nac_A          190 EAMHVGTVAA-GRIGLAVLRRLAPFDV--HLHYTDRHRLPESVEKELN-------LTW---HATREDMYPVCDVVTLNCP  256 (393)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGTC--EEEEECSSCCCHHHHHHHT-------CEE---CSSHHHHGGGCSEEEECSC
T ss_pred             CCCEEEEEeE-CHHHHHHHHHHHhCCC--EEEEEcCCccchhhHhhcC-------cee---cCCHHHHHhcCCEEEEecC
Confidence            3569999998 9999999999888787  899999875 222211111       111   1256788999999999853


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      ..  + +++. ++  |    .   +.+....|.+++|+++-
T Consensus       257 lt--~-~t~~-li--~----~---~~l~~mk~gailIN~aR  284 (393)
T 2nac_A          257 LH--P-ETEH-MI--N----D---ETLKLFKRGAYIVNTAR  284 (393)
T ss_dssp             CC--T-TTTT-CB--S----H---HHHTTSCTTEEEEECSC
T ss_pred             Cc--h-HHHH-Hh--h----H---HHHhhCCCCCEEEECCC
Confidence            21  1 1111 11  1    1   22334457899988863

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=96.43  E-value=0.013  Score=52.97  Aligned_cols=74  Identities=19%  Similarity=0.163  Sum_probs=44.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccC--CceEEEEecCCCHHhhhCCCCEEEEc
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVIIP  121 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~--~~~v~~~~~t~d~~eal~~aDiVIit  121 (289)
                      +++||+|+|++|.+|+.++..+...+-..=+..+|.+.......|+.....  ...+.   .++|+++.+.++|+||-.
T Consensus        20 ~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~---v~~dl~~ll~~aDVvIDF   95 (288)
T 3ijp_A           20 GSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVR---ITDDPESAFSNTEGILDF   95 (288)
T ss_dssp             -CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCB---CBSCHHHHTTSCSEEEEC
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCce---eeCCHHHHhcCCCEEEEc
Confidence            457999999779999999988876653322445576542111122222110  11222   235788888999999864

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=96.38  E-value=0.008  Score=52.15  Aligned_cols=57  Identities=25%  Similarity=0.386  Sum_probs=42.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEE-EEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhh-CCCCEEEEcCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVL-HLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL-TGMDIVIIPAG  123 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI-~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal-~~aDiVIitag  123 (289)
                      |||+|||+ |.+|..++..|...++  +| .++|.++. .  .+           .   .+++++.+ .++|+||++..
T Consensus         1 m~vgiIG~-G~mG~~~~~~l~~~g~--~lv~v~d~~~~-~--~~-----------~---~~~~~~l~~~~~DvVv~~~~   59 (236)
T 2dc1_A            1 MLVGLIGY-GAIGKFLAEWLERNGF--EIAAILDVRGE-H--EK-----------M---VRGIDEFLQREMDVAVEAAS   59 (236)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEECSSCC-C--TT-----------E---ESSHHHHTTSCCSEEEECSC
T ss_pred             CEEEEECC-CHHHHHHHHHHhcCCC--EEEEEEecCcc-h--hh-----------h---cCCHHHHhcCCCCEEEECCC
Confidence            58999998 9999999988877776  76 68887641 1  10           1   13676777 69999999853

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=96.37  E-value=0.01  Score=55.12  Aligned_cols=74  Identities=18%  Similarity=0.299  Sum_probs=48.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      ..++|+|||+ |.+|...+..+.......+|.++|++..  +..+.++... ....+..   .+++++++++||+||++.
T Consensus       128 ~~~~v~iIGa-G~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~-~g~~~~~---~~~~~eav~~aDiVi~aT  202 (350)
T 1x7d_A          128 NARKMALIGN-GAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEY-SGLTIRR---ASSVAEAVKGVDIITTVT  202 (350)
T ss_dssp             TCCEEEEECC-STTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTC-TTCEEEE---CSSHHHHHTTCSEEEECC
T ss_pred             cCCeEEEECC-cHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhc-cCceEEE---eCCHHHHHhcCCEEEEec
Confidence            3458999998 9999998876654222469999999762  2222233221 0112332   346788999999999985


Q ss_pred             C
Q 022947          123 G  123 (289)
Q Consensus       123 g  123 (289)
                      .
T Consensus       203 p  203 (350)
T 1x7d_A          203 A  203 (350)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.37  E-value=0.009  Score=52.60  Aligned_cols=34  Identities=24%  Similarity=0.399  Sum_probs=30.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .||.|+|+ |.+|+.++..|+..|. .+|.++|.+.
T Consensus        32 ~~VlVvG~-Gg~G~~va~~La~~Gv-~~i~lvD~d~   65 (249)
T 1jw9_B           32 SRVLIVGL-GGLGCAASQYLASAGV-GNLTLLDFDT   65 (249)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECCCB
T ss_pred             CeEEEEee-CHHHHHHHHHHHHcCC-CeEEEEcCCC
Confidence            48999998 9999999999998885 5999999875

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=96.36  E-value=0.0063  Score=55.72  Aligned_cols=94  Identities=23%  Similarity=0.248  Sum_probs=60.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeC-CCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV-VNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~-~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      ..++|+|||. |.+|..++..+...|.  +|+.+|+ +.......++.       +..   ..++++.+++||+|+++..
T Consensus       145 ~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~g-------~~~---~~~l~ell~~aDvVil~~p  211 (320)
T 1gdh_A          145 DNKTLGIYGF-GSIGQALAKRAQGFDM--DIDYFDTHRASSSDEASYQ-------ATF---HDSLDSLLSVSQFFSLNAP  211 (320)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSCCCHHHHHHHT-------CEE---CSSHHHHHHHCSEEEECCC
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcChhhhhhcC-------cEE---cCCHHHHHhhCCEEEEecc
Confidence            3569999998 9999999999988886  9999998 76322222111       111   2257788999999999853


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      ..  +. ++. ++  |    .   +.+....|.+++++++.
T Consensus       212 ~~--~~-t~~-~i--~----~---~~l~~mk~gailIn~ar  239 (320)
T 1gdh_A          212 ST--PE-TRY-FF--N----K---ATIKSLPQGAIVVNTAR  239 (320)
T ss_dssp             CC--TT-TTT-CB--S----H---HHHTTSCTTEEEEECSC
T ss_pred             Cc--hH-HHh-hc--C----H---HHHhhCCCCcEEEECCC
Confidence            22  11 111 11  1    1   12333457888888764

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=96.36  E-value=0.018  Score=51.70  Aligned_cols=34  Identities=15%  Similarity=0.152  Sum_probs=30.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .++|.|+|+ |.||...+..|+..|.  +|+++|.+.
T Consensus        13 ~k~VLVVGg-G~va~rka~~Ll~~Ga--~VtViap~~   46 (274)
T 1kyq_A           13 DKRILLIGG-GEVGLTRLYKLMPTGC--KLTLVSPDL   46 (274)
T ss_dssp             TCEEEEEEE-SHHHHHHHHHHGGGTC--EEEEEEEEE
T ss_pred             CCEEEEECC-cHHHHHHHHHHHhCCC--EEEEEcCCC
Confidence            469999999 9999999999999997  899998754

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=96.35  E-value=0.0033  Score=58.58  Aligned_cols=77  Identities=16%  Similarity=0.243  Sum_probs=43.8

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceE-EEEecCCCHHhhhCCCCEEEEcC
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVV-RGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v-~~~~~t~d~~eal~~aDiVIita  122 (289)
                      ++++||+|+||+|.+|..++..|...+.+ ||+.+......+...+-.+......+ ..... .+ ++.++++|+||++.
T Consensus        14 M~~~kV~IiGAtG~iG~~llr~L~~~p~~-elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~-~~-~~~~~~vDvVf~at   90 (359)
T 1xyg_A           14 EKDIRIGLLGASGYTGAEIVRLLANHPHF-QVTLMTADRKAGQSMESVFPHLRAQKLPTLVS-VK-DADFSTVDAVFCCL   90 (359)
T ss_dssp             -CCEEEEEECCSSHHHHHHHHHHHTCSSE-EEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBC-GG-GCCGGGCSEEEECC
T ss_pred             ccCcEEEEECcCCHHHHHHHHHHHcCCCc-EEEEEeCchhcCCCHHHhCchhcCccccccee-cc-hhHhcCCCEEEEcC
Confidence            34579999998899999999988877644 66666433322322221221110000 00001 11 34567899999987


Q ss_pred             C
Q 022947          123 G  123 (289)
Q Consensus       123 g  123 (289)
                      |
T Consensus        91 p   91 (359)
T 1xyg_A           91 P   91 (359)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=96.35  E-value=0.0061  Score=56.45  Aligned_cols=73  Identities=16%  Similarity=0.200  Sum_probs=43.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccC-C-ceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT-N-AVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~-~-~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      ++||+|+||+|.+|..++..|...+.. ||+.+-.....+...+-.+... . ..+..    .++. ++.++|+||++.|
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~p~~-elv~v~s~~~~g~~~~~~~~~~~g~~~~~~----~~~~-~~~~vDvV~~a~g   77 (345)
T 2ozp_A            4 KKTLSIVGASGYAGGEFLRLALSHPYL-EVKQVTSRRFAGEPVHFVHPNLRGRTNLKF----VPPE-KLEPADILVLALP   77 (345)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCTTE-EEEEEBCSTTTTSBGGGTCGGGTTTCCCBC----BCGG-GCCCCSEEEECCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCc-EEEEEECchhhCchhHHhCchhcCcccccc----cchh-HhcCCCEEEEcCC
Confidence            579999998899999999888876643 6666543332222222111110 0 11111    1232 4789999999876


Q ss_pred             C
Q 022947          124 V  124 (289)
Q Consensus       124 ~  124 (289)
                      .
T Consensus        78 ~   78 (345)
T 2ozp_A           78 H   78 (345)
T ss_dssp             T
T ss_pred             c
Confidence            3

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=96.34  E-value=0.0052  Score=57.00  Aligned_cols=89  Identities=19%  Similarity=0.325  Sum_probs=60.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      .++|+|||. |.+|+.+|..+...|.  +|+.+|+....    +....     +..    .++++.+++||+|+++....
T Consensus       148 gktvgIiGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~----~~~~~-----~~~----~~l~ell~~aDvV~l~~Plt  211 (343)
T 2yq5_A          148 NLTVGLIGV-GHIGSAVAEIFSAMGA--KVIAYDVAYNP----EFEPF-----LTY----TDFDTVLKEADIVSLHTPLF  211 (343)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCG----GGTTT-----CEE----CCHHHHHHHCSEEEECCCCC
T ss_pred             CCeEEEEec-CHHHHHHHHHHhhCCC--EEEEECCChhh----hhhcc-----ccc----cCHHHHHhcCCEEEEcCCCC
Confidence            458999998 9999999999998887  99999987632    11111     111    15778899999999986322


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                        + +++. ++  |.       +.+....|.+++|+++
T Consensus       212 --~-~t~~-li--~~-------~~l~~mk~gailIN~a  236 (343)
T 2yq5_A          212 --P-STEN-MI--GE-------KQLKEMKKSAYLINCA  236 (343)
T ss_dssp             --T-TTTT-CB--CH-------HHHHHSCTTCEEEECS
T ss_pred             --H-HHHH-Hh--hH-------HHHhhCCCCcEEEECC
Confidence              1 1221 11  21       2244456899999985

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=96.33  E-value=0.0067  Score=55.45  Aligned_cols=72  Identities=18%  Similarity=0.203  Sum_probs=49.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      .++|+|||+ |.+|...+..|.......+|.++|++..+..+.++.... ...+..   . ++++++++||+||.+..
T Consensus       121 ~~~v~iIGa-G~~a~~~~~al~~~~~~~~V~v~~r~~a~~la~~l~~~~-g~~~~~---~-~~~eav~~aDIVi~aT~  192 (313)
T 3hdj_A          121 SSVLGLFGA-GTQGAEHAAQLSARFALEAILVHDPYASPEILERIGRRC-GVPARM---A-APADIAAQADIVVTATR  192 (313)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECTTCCHHHHHHHHHHH-TSCEEE---C-CHHHHHHHCSEEEECCC
T ss_pred             CcEEEEECc-cHHHHHHHHHHHHhCCCcEEEEECCcHHHHHHHHHHHhc-CCeEEE---e-CHHHHHhhCCEEEEccC
Confidence            458999998 999999988776633367999999984333334443211 122332   2 67899999999998854

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=96.32  E-value=0.0045  Score=53.39  Aligned_cols=97  Identities=18%  Similarity=0.071  Sum_probs=57.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCC---HHhh-hCCCCEEEEc
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ---LEDA-LTGMDIVIIP  121 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d---~~ea-l~~aDiVIit  121 (289)
                      .++|.|+|+ |.+|..++..|...|+   |+++|.++...  ..+. .  ...+.. ...++   ++++ +++||.||++
T Consensus         9 ~~~viI~G~-G~~G~~la~~L~~~g~---v~vid~~~~~~--~~~~-~--~~~~i~-gd~~~~~~l~~a~i~~ad~vi~~   78 (234)
T 2aef_A            9 SRHVVICGW-SESTLECLRELRGSEV---FVLAEDENVRK--KVLR-S--GANFVH-GDPTRVSDLEKANVRGARAVIVD   78 (234)
T ss_dssp             -CEEEEESC-CHHHHHHHHHSTTSEE---EEEESCGGGHH--HHHH-T--TCEEEE-SCTTCHHHHHHTTCTTCSEEEEC
T ss_pred             CCEEEEECC-ChHHHHHHHHHHhCCe---EEEEECCHHHH--HHHh-c--CCeEEE-cCCCCHHHHHhcCcchhcEEEEc
Confidence            468999998 9999999998877763   88898875321  1122 1  111111 11122   3333 7899999998


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCC-cEEEEecCCCc
Q 022947          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPK-AIVNLISNPVN  167 (289)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~-aiviv~tNPvd  167 (289)
                      .+.         +  ..|..    ++..+++..|+ -++.-+.||-.
T Consensus        79 ~~~---------d--~~n~~----~~~~a~~~~~~~~iia~~~~~~~  110 (234)
T 2aef_A           79 LES---------D--SETIH----CILGIRKIDESVRIIAEAERYEN  110 (234)
T ss_dssp             CSC---------H--HHHHH----HHHHHHHHCSSSEEEEECSSGGG
T ss_pred             CCC---------c--HHHHH----HHHHHHHHCCCCeEEEEECCHhH
Confidence            531         1  23433    44445667787 44555566654

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=96.32  E-value=0.0098  Score=55.15  Aligned_cols=32  Identities=38%  Similarity=0.610  Sum_probs=25.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY   78 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~Lv   78 (289)
                      ++||+|+||+|.+|..++..|...+.. ||+.+
T Consensus         8 ~~kV~IiGAtG~iG~~llr~L~~~p~~-ev~~i   39 (354)
T 1ys4_A            8 KIKVGVLGATGSVGQRFVQLLADHPMF-ELTAL   39 (354)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCSSE-EEEEE
T ss_pred             cceEEEECcCCHHHHHHHHHHhcCCCC-EEEEE
Confidence            469999998899999999888776533 77666

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.28  E-value=0.0078  Score=52.47  Aligned_cols=92  Identities=16%  Similarity=0.155  Sum_probs=50.5

Q ss_pred             hcCCCccccccccccccccccccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCc
Q 022947           18 HLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNA   97 (289)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~   97 (289)
                      |-|-..-.|||...|==-.++.      .++|.|||+ |.||...+..|+..|.  +|.++|.+.. ....++....   
T Consensus         9 ~~~~~~~~~~~~~~~Pifl~L~------gk~VLVVGg-G~va~~ka~~Ll~~GA--~VtVvap~~~-~~l~~l~~~~---   75 (223)
T 3dfz_A            9 HHHHSSGHIEGRHMYTVMLDLK------GRSVLVVGG-GTIATRRIKGFLQEGA--AITVVAPTVS-AEINEWEAKG---   75 (223)
T ss_dssp             -------------CCEEEECCT------TCCEEEECC-SHHHHHHHHHHGGGCC--CEEEECSSCC-HHHHHHHHTT---
T ss_pred             ccccccCcccccCccccEEEcC------CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCCCC-HHHHHHHHcC---
Confidence            3445556778776543333333      349999999 9999999999998886  8999987542 2223333321   


Q ss_pred             eEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           98 VVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        98 ~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      .+.......+ ++.+.++|+||.+.+
T Consensus        76 ~i~~i~~~~~-~~dL~~adLVIaAT~  100 (223)
T 3dfz_A           76 QLRVKRKKVG-EEDLLNVFFIVVATN  100 (223)
T ss_dssp             SCEEECSCCC-GGGSSSCSEEEECCC
T ss_pred             CcEEEECCCC-HhHhCCCCEEEECCC
Confidence            2222222222 367899999998754

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=96.27  E-value=0.0049  Score=54.96  Aligned_cols=70  Identities=13%  Similarity=0.226  Sum_probs=49.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      +.+||+|||+ |.+|..++..|...|.  +|.++|++..+  +.++....   .+..   .+++++.++++|+||.+...
T Consensus       128 ~~~~v~iiGa-G~~g~aia~~L~~~g~--~V~v~~r~~~~--~~~l~~~~---g~~~---~~~~~~~~~~aDiVi~atp~  196 (275)
T 2hk9_A          128 KEKSILVLGA-GGASRAVIYALVKEGA--KVFLWNRTKEK--AIKLAQKF---PLEV---VNSPEEVIDKVQVIVNTTSV  196 (275)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSSHHH--HHHHTTTS---CEEE---CSCGGGTGGGCSEEEECSST
T ss_pred             CCCEEEEECc-hHHHHHHHHHHHHcCC--EEEEEECCHHH--HHHHHHHc---CCee---ehhHHhhhcCCCEEEEeCCC
Confidence            3469999998 9999999999988886  99999987522  22222211   1222   12566788999999999754


Q ss_pred             C
Q 022947          125 P  125 (289)
Q Consensus       125 ~  125 (289)
                      .
T Consensus       197 ~  197 (275)
T 2hk9_A          197 G  197 (275)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=96.27  E-value=0.0083  Score=55.22  Aligned_cols=90  Identities=23%  Similarity=0.320  Sum_probs=58.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      .++|+|||. |.+|..++..+...|.  +|+.+|...... ..++  ..       +  ..++++.+++||+|+++....
T Consensus       146 g~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~-~~~~--~~-------~--~~~l~ell~~aDvV~l~~p~~  210 (333)
T 1j4a_A          146 DQVVGVVGT-GHIGQVFMQIMEGFGA--KVITYDIFRNPE-LEKK--GY-------Y--VDSLDDLYKQADVISLHVPDV  210 (333)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHH-HHHT--TC-------B--CSCHHHHHHHCSEEEECSCCC
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCcchh-HHhh--Ce-------e--cCCHHHHHhhCCEEEEcCCCc
Confidence            468999998 9999999999988887  899999876322 1111  10       1  125678899999999986321


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                        + +++. ++  |    .   +.+....|.+++++++
T Consensus       211 --~-~t~~-li--~----~---~~l~~mk~ga~lIn~a  235 (333)
T 1j4a_A          211 --P-ANVH-MI--N----D---ESIAKMKQDVVIVNVS  235 (333)
T ss_dssp             --G-GGTT-CB--S----H---HHHHHSCTTEEEEECS
T ss_pred             --H-HHHH-HH--h----H---HHHhhCCCCcEEEECC
Confidence              1 1111 11  1    1   1233345788998885

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=96.26  E-value=0.0053  Score=58.21  Aligned_cols=112  Identities=22%  Similarity=0.263  Sum_probs=67.5

Q ss_pred             ccccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch-hHHhhhhcccCCce---------EEEEec--
Q 022947           37 DCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTNAV---------VRGFLG--  104 (289)
Q Consensus        37 ~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~-g~~~DL~~~~~~~~---------v~~~~~--  104 (289)
                      .=+..++..+.||+|+|+ |.+|...+..+...|.  +|..+|++... ..+.++........         ...+..  
T Consensus       181 l~t~~g~v~~~kV~ViG~-G~iG~~aa~~a~~lGa--~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~  257 (405)
T 4dio_A          181 MMTAAGTVPAAKIFVMGA-GVAGLQAIATARRLGA--VVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEM  257 (405)
T ss_dssp             EEETTEEECCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSTTHHHHHHHTTCEECCCCC----------------
T ss_pred             hhccCCCcCCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhc
Confidence            333344556789999999 9999999999988886  89999998732 22222211000000         001110  


Q ss_pred             --------CCCHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          105 --------QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       105 --------t~d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                              ..++.+++++||+||.++..|.+...   .++  +    +   +.++...|.++|+.++
T Consensus       258 s~~~~~~~~~~l~e~l~~aDVVI~tvlipg~~ap---~Lv--t----~---emv~~Mk~GsVIVDvA  312 (405)
T 4dio_A          258 SGEYQVKQAALVAEHIAKQDIVITTALIPGRPAP---RLV--T----R---EMLDSMKPGSVVVDLA  312 (405)
T ss_dssp             -CHHHHHHHHHHHHHHHTCSEEEECCCCSSSCCC---CCB--C----H---HHHTTSCTTCEEEETT
T ss_pred             chhhhhhhHhHHHHHhcCCCEEEECCcCCCCCCC---EEe--c----H---HHHhcCCCCCEEEEEe
Confidence                    12467889999999999877643221   111  1    2   2333445888888876

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=96.26  E-value=0.007  Score=56.88  Aligned_cols=115  Identities=28%  Similarity=0.254  Sum_probs=68.5

Q ss_pred             cccccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcccCCce-----EEEEe------
Q 022947           36 MDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAV-----VRGFL------  103 (289)
Q Consensus        36 ~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~~~~~~-----v~~~~------  103 (289)
                      +.=+..++.++.||+|+|+ |.+|...+..+...|.  +|..+|++.. ...+.++.-......     ...+.      
T Consensus       174 ~l~~~~~~v~~~kV~ViG~-G~iG~~aa~~a~~lGa--~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~  250 (381)
T 3p2y_A          174 MLTTAAGTVKPASALVLGV-GVAGLQALATAKRLGA--KTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEA  250 (381)
T ss_dssp             CEECSSCEECCCEEEEESC-SHHHHHHHHHHHHHTC--EEEEECSSGGGHHHHHHTTCEECCCC-------------CHH
T ss_pred             hhhcccCCcCCCEEEEECc-hHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHH
Confidence            3334445567789999999 9999999998888786  8999999862 222232211000000     00000      


Q ss_pred             ----cCCCHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCC
Q 022947          104 ----GQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       104 ----~t~d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNP  165 (289)
                          ...++++.+++||+||.++..|.+... .  ++      .++.   ++...|.++|+.++-+
T Consensus       251 ~~~~~~~~l~e~l~~aDIVI~tv~iPg~~ap-~--Lv------t~em---v~~MkpGsVIVDvA~d  304 (381)
T 3p2y_A          251 ERAQQQQALEDAITKFDIVITTALVPGRPAP-R--LV------TAAA---ATGMQPGSVVVDLAGE  304 (381)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEECCCCTTSCCC-C--CB------CHHH---HHTSCTTCEEEETTGG
T ss_pred             HHhhhHHHHHHHHhcCCEEEECCCCCCcccc-e--ee------cHHH---HhcCCCCcEEEEEeCC
Confidence                112567889999999999876643211 0  11      1233   3334578888887643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	289
d1mlda1	144	c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus s	1e-44
d2cmda1	145	c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichi	4e-36
d7mdha1	175	c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (	2e-32
d1llda1	143	c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobac	5e-30
d1y7ta1	154	c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus th	1e-29
d1guza1	142	c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium	2e-29
d1y6ja1	142	c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridi	3e-29
d1a5za1	140	c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermoto	3e-29
d1ojua1	142	c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon	3e-29
d1o6za1	142	c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon	6e-29
d5mdha1	154	c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus s	8e-29
d1uxja1	142	c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflex	2e-28
d1t2da1	150	c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria p	2e-27
d1ez4a1	146	c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobac	7e-26
d2ldxa1	159	c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mu	4e-25
d1ldna1	148	c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus	4e-25
d1i0za1	160	c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Ho	5e-25
d1pzga1	154	c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplas	2e-24
d1hyha1	146	c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydro	5e-23
d1hyea1	145	c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydroge	8e-23
d1mlda2	169	d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (S	1e-22
d2cmda2	167	d.162.1.1 (A:146-312) Malate dehydrogenase {Escher	1e-20
d1up7a1	162	c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Ther	2e-18
d1s6ya1	169	c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Baci	2e-16
d1u8xx1	167	c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase	5e-16
d1guza2	163	d.162.1.1 (A:143-305) Malate dehydrogenase {Chloro	8e-16
d1obba1	171	c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermoto	6e-15
d1uxja2	164	d.162.1.1 (A:144-307) Malate dehydrogenase {Chloro	6e-14
d1ldma2	169	d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfi	2e-13
d1hyha2	163	d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehy	1e-12
d5mdha2	179	d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (S	2e-12
d1y6ja2	169	d.162.1.1 (A:149-317) Lactate dehydrogenase {Clost	8e-12
d1llda2	170	d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifid	1e-11
d1ldna2	168	d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacil	1e-11
d1a5za2	172	d.162.1.1 (A:164-333) Lactate dehydrogenase {Therm	4e-11
d1i0za2	172	d.162.1.1 (A:161-332) Lactate dehydrogenase {Human	8e-11
d1llca2	172	d.162.1.1 (A:165-334) Lactate dehydrogenase {Lacto	1e-10
d1ez4a2	171	d.162.1.1 (A:163-334) Lactate dehydrogenase {Lacto	1e-10
d1hyea2	168	d.162.1.1 (A:146-313) MJ0490, lactate/malate dehyd	1e-10
d7mdha2	188	d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghu	2e-10
d1pzga2	174	d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxop	5e-10
d2ldxa2	172	d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse	6e-10
d1o6za2	161	d.162.1.1 (A:163-330) Malate dehydrogenase {Archae	1e-09
d1t2da2	165	d.162.1.1 (A:151-315) Lactate dehydrogenase {Malar	3e-09
d1y7ta2	173	d.162.1.1 (A:154-332) Malate dehydrogenase {Thermu	2e-08
d1b8pa2	171	d.162.1.1 (A:159-329) Malate dehydrogenase {Aquasp	1e-07

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 144

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  146 bits (369), Expect = 1e-44
 Identities = 93/143 (65%), Positives = 116/143 (81%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
           KVAVLGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG +Q
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61

Query: 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
           L D L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP A++ +ISNPVN
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121

Query: 168 STVPIAAEVFKKVGTYDPKRLLG 190
           ST+PI AEVFKK G Y+P ++ G
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFG 144

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 145

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score =  124 bits (312), Expect = 4e-36
 Identities = 83/145 (57%), Positives = 101/145 (69%), Gaps = 3/145 (2%)

Query: 48  KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQ 105
           KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
                   G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I+NP
Sbjct: 62  DATPAL-EGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLG 190
           VN+TV IAAEV KK G YD  +L G
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFG 145

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

 Score =  115 bits (290), Expect = 2e-32
 Identities = 28/137 (20%), Positives = 49/137 (35%), Gaps = 9/137 (6%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVNTPGVTADISHMDTNA---VV 99
            +AV GAAG I   L   +    +        L L     +      ++    ++   ++
Sbjct: 26  NIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLL 85

Query: 100 RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPK-AI 158
           R         +    +D  ++    PR PGM R  L +IN  I     + +     K   
Sbjct: 86  REVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVK 145

Query: 159 VNLISNPVNSTVPIAAE 175
           V ++ NP N+   I  +
Sbjct: 146 VLVVGNPCNTNALICLK 162

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 143

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

 Score =  108 bits (271), Expect = 5e-30
 Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 8/145 (5%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ 105
           K+AV+GA G +G  LA       +   + L D+          D+ H  +        G 
Sbjct: 3   KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS 61

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
              E      D+V+I AG  +KPG +R +L      I+K +   + K  P AI  LI+NP
Sbjct: 62  DDPEIC-RDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNP 120

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLG 190
           V+    IA  V +K+      ++ G
Sbjct: 121 VD----IATHVAQKLTGLPENQIFG 141

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score =  107 bits (269), Expect = 1e-29
 Identities = 34/149 (22%), Positives = 55/149 (36%), Gaps = 12/149 (8%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVS--------VLHLYDVVNTPGVTADISHMDTNAVV 99
           +VAV GAAG IG  L   +    ++         +L +   +                ++
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLL 65

Query: 100 RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPK-AI 158
            G       + A    D  ++    PRK GM R DL  +N  I       +A+   K   
Sbjct: 66  AGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVK 125

Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPKR 187
           V ++ NP N+   IA   +K     +P+ 
Sbjct: 126 VLVVGNPANTNALIA---YKNAPGLNPRN 151

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

 Score =  106 bits (266), Expect = 2e-29
 Identities = 47/146 (32%), Positives = 68/146 (46%), Gaps = 7/146 (4%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ 105
           K+ V+GA G +G   A  +    L   L L DVV     G   D+       +    +  
Sbjct: 2   KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG 60

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
                     DIVII AG+PRKPGMTR+DL   NAGIVK + + I K     I+ ++SNP
Sbjct: 61  SNDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNP 120

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGV 191
           ++    +A            +R++G+
Sbjct: 121 LDIMTHVA----WVRSGLPKERVIGM 142

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

 Score =  106 bits (266), Expect = 3e-29
 Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 5/143 (3%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
           KVA++GA G +G   A  M +    + L L DV     +   +        +        
Sbjct: 3   KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAG 61

Query: 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
               +   D++++ AG  RKPG TR DL   N  I K + + I K     ++ ++SNPV+
Sbjct: 62  DYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVD 121

Query: 168 STVPIAAEVFKKVGTYDPKRLLG 190
               +     +K       +++G
Sbjct: 122 IITYMI----QKWSGLPVGKVIG 140

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 140

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score =  106 bits (265), Expect = 3e-29
 Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 5/143 (3%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
           K+ ++G  G +G   A  + +      + L DV         +  +      R       
Sbjct: 2   KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAG 60

Query: 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
               L G D+VI+ AGVP+KPG TR  L   NA ++K +   ++K  P +IV +++NPV+
Sbjct: 61  DYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD 120

Query: 168 STVPIAAEVFKKVGTYDPKRLLG 190
               +    F K    DP+++ G
Sbjct: 121 ----VLTYFFLKESGMDPRKVFG 139

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score =  106 bits (265), Expect = 3e-29
 Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 7/146 (4%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLGQ 105
           K+  +GA G +G   A    +N  V  + L D+      G   D++H          +  
Sbjct: 2   KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG 60

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
                 L G +I+++ AG+ RKPGMTR DL + NAGI+K + + I +  P++ + +++NP
Sbjct: 61  GADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNP 120

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGV 191
           ++    I      K        + G+
Sbjct: 121 MDVMTYIM----WKESGKPRNEVFGM 142

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  105 bits (263), Expect = 6e-29
 Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 10/147 (6%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTNAVVRGFL 103
           KV+V+GAAG +G      + +  +   +   D+ +    T G  AD +H    A      
Sbjct: 2   KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNH--GIAYDSNTR 59

Query: 104 GQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163
            +Q   +   G D+V+I AG+PR+PG TR DL   NA I++ +   + +     I    S
Sbjct: 60  VRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS 119

Query: 164 NPVNSTVPIAAEVFKKVGTYDPKRLLG 190
           NPV+    +      + G    ++++G
Sbjct: 120 NPVD----LLNRHLYEAGDRSREQVIG 142

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  105 bits (263), Expect = 8e-29
 Identities = 33/153 (21%), Positives = 59/153 (38%), Gaps = 12/153 (7%)

Query: 48  KVAVLGAAGGIGQPLAML-----MKINPLVSVLHLYDVVNTPGVTADISHMDTNAVV--- 99
           +V V GAAG I   L        +       +L L D+    GV   +     +  +   
Sbjct: 5   RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLL 64

Query: 100 RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV 159
           +  +   + E A   +D+ I+   +PR+ GM R DL   N  I K     + K   K++ 
Sbjct: 65  KDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVK 124

Query: 160 NL-ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV 191
            + + NP N+    A++    +     +    +
Sbjct: 125 VIVVGNPANTNCLTASKSAPSI---PKENFSCL 154

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

 Score =  104 bits (260), Expect = 2e-28
 Identities = 37/144 (25%), Positives = 69/144 (47%), Gaps = 6/144 (4%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGFLGQQ 106
           K++++GA G +G   A  +    L  ++ L  V   P G   D+            +   
Sbjct: 3   KISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGT 61

Query: 107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 166
                    D++++ +G PRKPGM+R+DL  +NA I +      A   P A++ +++NP+
Sbjct: 62  NNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPL 121

Query: 167 NSTVPIAAEVFKKVGTYDPKRLLG 190
           ++   +AAEV      +  +R++G
Sbjct: 122 DAMTYLAAEVSG----FPKERVIG 141

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 150

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score =  102 bits (254), Expect = 2e-27
 Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 11/154 (7%)

Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGF 102
           +P  K+ ++G+ G IG  +A L+    L  V+    V N P G   D SH +  A     
Sbjct: 1   APKAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 59

Query: 103 LGQQQLEDALTGMDIVIIPAGVPRKPGMT-----RDDLFNINAGIVKTLCEGIAKCCPKA 157
           +      D L G D+VI+ AG  + PG +     RDDL  +N  I+  +   I K CP A
Sbjct: 60  VSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNA 119

Query: 158 IVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV 191
            + +++NPV+  V +      +       +++G+
Sbjct: 120 FIIVVTNPVDVMVQLL----HQHSGVPKNKIIGL 149

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

 Score = 97.8 bits (243), Expect = 7e-26
 Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 5/143 (3%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
           KV ++G  G +G   A  M    +     + DVV        +   D  A          
Sbjct: 7   KVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSG 65

Query: 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
                   D+V+I AG P+KPG +R DL N N  I+ ++ + +       I  + +NPV+
Sbjct: 66  EYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVD 125

Query: 168 STVPIAAEVFKKVGTYDPKRLLG 190
               I      K   +  +R++G
Sbjct: 126 ----ILTYATWKFSGFPKERVIG 144

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 159

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 96.2 bits (239), Expect = 4e-25
 Identities = 34/145 (23%), Positives = 58/145 (40%), Gaps = 8/145 (5%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLGQ 105
           K+ V+G  G +G   A+ + +  L   L L D       G   D+ H          +  
Sbjct: 21  KITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFG 79

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
           +          +VII AG     G TR DL   N  I+K +  G+ +  P   + +++NP
Sbjct: 80  KDYNV-SANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNP 138

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLG 190
           V+    +      K+  +   R++G
Sbjct: 139 VDILTYVVW----KISGFPVGRVIG 159

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 148

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 95.5 bits (237), Expect = 4e-25
 Identities = 35/147 (23%), Positives = 62/147 (42%), Gaps = 8/147 (5%)

Query: 46  GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA--DISHMDTNAVVRGFL 103
           G +V V+GA G +G      +    +   + L D   +  +    D +H    A     +
Sbjct: 6   GARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDI 64

Query: 104 GQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163
                +D     D+V+I AG  +KPG TR DL + N  I +++ E +     + +  + +
Sbjct: 65  WHGDYDD-CRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123

Query: 164 NPVNSTVPIAAEVFKKVGTYDPKRLLG 190
           NPV+    I      K      +R++G
Sbjct: 124 NPVD----ILTYATWKFSGLPHERVIG 146

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

 Score = 95.9 bits (238), Expect = 5e-25
 Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 8/148 (5%)

Query: 45  PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGF 102
           P  K+ V+G  G +G   A+ +    L   L L DV+     G   D+ H          
Sbjct: 19  PNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKI 77

Query: 103 LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 162
           +  +          IV++ AGV ++ G +R +L   N  + K +   I K  P  I+ ++
Sbjct: 78  VADKDYSVT-ANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVV 136

Query: 163 SNPVNSTVPIAAEVFKKVGTYDPKRLLG 190
           SNPV+    +      K+      R++G
Sbjct: 137 SNPVDILTYVT----WKLSGLPKHRVIG 160

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

 Score = 94.4 bits (234), Expect = 2e-24
 Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 12/150 (8%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA-DISHMDTNAVVRGFLGQQ 106
           KVA++G+ G IG  +  L  +  L  V+    V   P   A D+SH+ +       +  +
Sbjct: 9   KVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAE 67

Query: 107 -QLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPKAIVN 160
              E ALTG D VI+ AG+ + PG      +R+DL   N+ I++ + + I K CPK  + 
Sbjct: 68  YSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFII 127

Query: 161 LISNPVNSTVPIAAEVFKKVGTYDPKRLLG 190
           +++NP++  V +  E            + G
Sbjct: 128 VVTNPLDCMVKVMCEASG----VPTNMICG 153

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

 Score = 90.2 bits (223), Expect = 5e-23
 Identities = 25/149 (16%), Positives = 53/149 (35%), Gaps = 12/149 (8%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLGQ 105
           K+ ++G  G +G  +A  +    +       D           D      N    G +  
Sbjct: 3   KIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI 61

Query: 106 QQLEDALTGMDIVIIPAGVPR----KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                 L   D+VI   G  +     P   R       + +V+++   + +     ++ +
Sbjct: 62  NDWAA-LADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVV 120

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLG 190
           ISNPV+    +   +F+ V  +   +++G
Sbjct: 121 ISNPVD----VITALFQHVTGFPAHKVIG 145

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 145

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 89.5 bits (221), Expect = 8e-23
 Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 11/149 (7%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV-VNTPGVTADISHMDTNAVVRGFL--- 103
           KV ++GA+G +G   A+L+   P +  L L     +   +      +             
Sbjct: 2   KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61

Query: 104 --GQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                +    +   D+VII +GVPRK GM+R DL   NA IV    + IA+ C   I  +
Sbjct: 62  YVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF-V 120

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLG 190
           I+NPV+     A         ++  ++ G
Sbjct: 121 ITNPVDVMTYKAL----VDSKFERNQVFG 145

>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 89.8 bits (222), Expect = 1e-22
 Identities = 53/84 (63%), Positives = 61/84 (72%)

Query: 191 VTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTD 250
           VT LD+VRAN FVAE+ GLDP  V VPV+GGHAG TI+PL+SQ  P       ++  LT 
Sbjct: 1   VTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTG 60

Query: 251 RIQNGGTEVVEAKTGAGSATLSMC 274
           RIQ  GTEVV+AK GAGSATLSM 
Sbjct: 61  RIQEAGTEVVKAKAGAGSATLSMA 84

>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 167

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 84.4 bits (208), Expect = 1e-20
 Identities = 56/83 (67%), Positives = 64/83 (77%), Gaps = 1/83 (1%)

Query: 191 VTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTD 250
           VT LD++R+NTFVAE+ G  P EV+VPV+GGH+GVTILPLLSQV      T  E+  LT 
Sbjct: 1   VTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPGVS-FTEQEVADLTK 59

Query: 251 RIQNGGTEVVEAKTGAGSATLSM 273
           RIQN GTEVVEAK G GSATLSM
Sbjct: 60  RIQNAGTEVVEAKAGGGSATLSM 82

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} Length = 162

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

 Score = 78.2 bits (192), Expect = 2e-18
 Identities = 21/167 (12%), Positives = 47/167 (28%), Gaps = 32/167 (19%)

Query: 48  KVAVLGAAGGIGQPLAMLMKI----NPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGF 102
           ++AV+G  G    P  +   +    +  +  +  YD+      +  D          +  
Sbjct: 2   RIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVL 60

Query: 103 LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIA----------- 151
           +     E A+     VI         G   D+   +  G++     G+            
Sbjct: 61  ISDT-FEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPI 119

Query: 152 --------KCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG 190
                   +    A +   +NP         E  +     + ++ +G
Sbjct: 120 VEEYVDTVRKTSNATIVNFTNPSG----HITEFVRNY--LEYEKFIG 160

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} Length = 169

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 72.8 bits (178), Expect = 2e-16
 Identities = 27/172 (15%), Positives = 47/172 (27%), Gaps = 36/172 (20%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPL----VSVLHLYDVVNTP--GVTADISH---MDTNAV 98
           K+A +G  G    P  +   I       V  L L D+                 ++   V
Sbjct: 3   KIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGV 61

Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGI-------- 150
                       AL G D V     V       +D+   +  G++     G         
Sbjct: 62  PIEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLR 121

Query: 151 ------------AKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG 190
                        + CP A +   +NP      +  E   +      ++++G
Sbjct: 122 TIPVILDIIRDMEELCPDAWLINFTNPAG----MVTEAVLRY--TKQEKVVG 167

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

 Score = 72.0 bits (176), Expect = 5e-16
 Identities = 32/162 (19%), Positives = 50/162 (30%), Gaps = 34/162 (20%)

Query: 47  FKVAVLGAAGGIGQP---LAMLMKINPL-VSVLHLYDV----VNTPGVTADISHMDTNAV 98
           F + + G  G    P   L +L  +    +  L LYD      +      D+      A 
Sbjct: 4   FSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFI-REKAP 61

Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIA------- 151
              F      E+A T +D V+    V +      D+   +  G+V     G         
Sbjct: 62  DIEFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMR 121

Query: 152 -------------KCCPKAIVNLISNPVNSTVPIAAEVFKKV 180
                        K  P A +   SNP      I AE  +++
Sbjct: 122 SIGGVLEILDYMEKYSPDAWMLNYSNPAA----IVAEATRRL 159

>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 163

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

 Score = 71.3 bits (174), Expect = 8e-16
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 5/89 (5%)

Query: 193 MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ----VKPSCSLTPTEIDYL 248
           +LD  R  +F+A  LG+  ++++  V+GGH    +  +       +  S  L    ID L
Sbjct: 3   VLDAARFRSFIAMELGVSMQDINACVLGGHGDAMVPVVKYTTVAGIPISDLLPAETIDKL 62

Query: 249 TDRIQNGGTEVVEAKTGAGSATLSMCRHM 277
            +R +NGG E+VE     GSA  +    +
Sbjct: 63  VERTRNGGAEIVEHL-KQGSAFYAPASSV 90

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

 Score = 69.0 bits (168), Expect = 6e-15
 Identities = 27/167 (16%), Positives = 43/167 (25%), Gaps = 34/167 (20%)

Query: 45  PGFKVAVLGAAGGIGQPLAM---LMKINPL-VSVLHLYDVV--NTPGVTADISHM-DTNA 97
           P  K+ ++GA G     L +   L K   L  S + L D+       +        +   
Sbjct: 1   PSVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVG 59

Query: 98  VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNI------------------- 138
               F     L+D +   D VI  A V     + +                         
Sbjct: 60  ADLKFEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDY 119

Query: 139 -------NAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFK 178
                         +   I K  PKA     +NP+     +      
Sbjct: 120 YTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLVTRTVP 166

>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 164

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

 Score = 65.9 bits (160), Expect = 6e-14
 Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 5/89 (5%)

Query: 193 MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSL----TPTEIDYL 248
           +LD  R  TF+A   G+  ++V   ++GGH    +            +     P  +  +
Sbjct: 3   VLDAARYRTFIAMEAGVSVKDVQAMLMGGHGDEMVPLPRFSTISGIPVSEFIAPDRLAQI 62

Query: 249 TDRIQNGGTEVVEAKTGAGSATLSMCRHM 277
            +R + GG E+V      GSA  +     
Sbjct: 63  VERTRKGGGEIVNLLKT-GSAYYAPAAAT 90

>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Dogfish (Squalus acanthias) [TaxId: 7797]

 Score = 65.3 bits (158), Expect = 2e-13
 Identities = 17/94 (18%), Positives = 26/94 (27%), Gaps = 8/94 (8%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP--------T 243
             LD  R    + E LG+        V+G H              S  L P         
Sbjct: 3   CNLDSARFRYLMGERLGVHSCSCHGWVIGEHGDSVPSVWSGMNVASIKLHPLDGTNKDKQ 62

Query: 244 EIDYLTDRIQNGGTEVVEAKTGAGSATLSMCRHM 277
           +   L   + +   EV++ K     A       +
Sbjct: 63  DWKKLHKDVVDSAYEVIKLKGYTSWAIGLSVADL 96

>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 163

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

 Score = 62.6 bits (151), Expect = 1e-12
 Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 6/92 (6%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLT------PTEI 245
           T+LD  R    V E   LDPR V    +G H     +   +       +         ++
Sbjct: 2   TLLDTARMQRAVGEAFDLDPRSVSGYNLGEHGNSQFVAWSTVRVMGQPIVTLADAGDIDL 61

Query: 246 DYLTDRIQNGGTEVVEAKTGAGSATLSMCRHM 277
             + +  + GG  V+  K        +    +
Sbjct: 62  AAIEEEARKGGFTVLNGKGYTSYGVATSAIRI 93

>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 179

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 62.5 bits (151), Expect = 2e-12
 Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 13/99 (13%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV----KPSCSLTPTEIDY 247
           T LD  RA   +A  LG+   +V   ++ G+   T  P ++      +         +  
Sbjct: 1   TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKD 60

Query: 248 -------LTDRIQNGGTEVVEAKTG--AGSATLSMCRHM 277
                      +Q  G  V++A+    A SA  ++C H+
Sbjct: 61  DSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHV 99

>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

 Score = 60.2 bits (145), Expect = 8e-12
 Identities = 13/97 (13%), Positives = 33/97 (34%), Gaps = 11/97 (11%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLT---------- 241
           T+LD +R    ++E LG+D + V   ++G H    +           ++           
Sbjct: 1   TVLDSIRFRYLLSEKLGVDVKNVHGYIIGEHGDSQLPLWSCTHIAGKNINEYIDDPKCNF 60

Query: 242 -PTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMCRHM 277
              +   + + ++  G  +++ K             +
Sbjct: 61  TEEDKKKIAEDVKTAGATIIKNKGATYYGIAVSINTI 97

>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 170

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

 Score = 59.8 bits (144), Expect = 1e-11
 Identities = 14/103 (13%), Positives = 35/103 (33%), Gaps = 16/103 (15%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLT---------- 241
           T LD  R    +A+  G++ + V   + G H    +    S       ++          
Sbjct: 1   TNLDSARLRFLIAQQTGVNVKNVHAYIAGEHGDSEVPLWESATIGGVPMSDWTPLPGHDP 60

Query: 242 --PTEIDYLTDRIQNGGTEVVEAKTG----AGSATLSMCRHML 278
               + + +   ++N   +++  K       G + + +   +L
Sbjct: 61  LDADKREEIHQEVKNAAYKIINGKGATNYAIGMSGVDIIEAVL 103

>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 59.5 bits (143), Expect = 1e-11
 Identities = 11/96 (11%), Positives = 30/96 (31%), Gaps = 10/96 (10%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLT---------- 241
           T+LD  R    + E   + P+ V   ++G H    +            +           
Sbjct: 1   TILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEA 60

Query: 242 PTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMCRHM 277
             +++ +   +++   +++E K             +
Sbjct: 61  QKDLERIFVNVRDAAYQIIEKKGATYYGIAMGLARV 96

>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score = 58.3 bits (140), Expect = 4e-11
 Identities = 19/103 (18%), Positives = 32/103 (31%), Gaps = 10/103 (9%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEID----- 246
           T+LD  R  T +A+  G  PR V V V+G H    +      +     L           
Sbjct: 2   TVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGDSEVPVWSGAMIGGIPLQNMCQVCQKCD 61

Query: 247 -----YLTDRIQNGGTEVVEAKTGAGSATLSMCRHMLLPSLPM 284
                   ++ +    E++E K     A       ++      
Sbjct: 62  SKILENFAEKTKRAAYEIIERKGATHYAIALAVADIVESIFFD 104

>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

 Score = 57.5 bits (138), Expect = 8e-11
 Identities = 17/98 (17%), Positives = 30/98 (30%), Gaps = 13/98 (13%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPT-------- 243
             LD  R    +AE LG+ P      ++G H G + + + S V  +              
Sbjct: 3   CNLDSARFRYLMAEKLGIHPSSCHGWILGEH-GDSSVAVWSGVNVAGVSLQELNPEMGTD 61

Query: 244 ----EIDYLTDRIQNGGTEVVEAKTGAGSATLSMCRHM 277
                   +   +     EV++ K     A       +
Sbjct: 62  NDSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADL 99

>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 56.8 bits (136), Expect = 1e-10
 Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 10/96 (10%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILP----------LLSQVKPSCSLT 241
           T LD  R    +AE++ +D R V   ++G H                 +   VK    + 
Sbjct: 1   TSLDTARFRQSIAEMVNVDARSVHAYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEIK 60

Query: 242 PTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMCRHM 277
             ++  + + +++   E+++ K        +    +
Sbjct: 61  EDKLVKMFEDVRDAAYEIIKLKGATFYGIATALARI 96

>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 171

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

 Score = 56.8 bits (136), Expect = 1e-10
 Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 11/96 (11%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDY---- 247
           T LD  R    + +   +DPR VD  ++G H G +     S                   
Sbjct: 1   TSLDSSRLRVALGKQFNVDPRSVDAYIMGEH-GDSEFAAYSTATIGTRPVRDVAKEQGVS 59

Query: 248 ------LTDRIQNGGTEVVEAKTGAGSATLSMCRHM 277
                 L D ++N   +++  K        +    +
Sbjct: 60  DDDLAKLEDGVRNKAYDIINLKGATFYGIGTALMRI 95

>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 168

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 56.8 bits (136), Expect = 1e-10
 Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 1/96 (1%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDR 251
           T LD +R    +A+  G+   EV   ++G H G +++PLLS              +    
Sbjct: 3   THLDSLRFKVAIAKFFGVHIDEVRTRIIGEH-GDSMVPLLSATSIGGIPIQKFERFKELP 61

Query: 252 IQNGGTEVVEAKTGAGSATLSMCRHMLLPSLPMLVS 287
           I     +V                      L ++  
Sbjct: 62  IDEIIEDVKTKGEQIIRLKGGSEFGPAAAILNVVRC 97

>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 188

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

 Score = 57.0 bits (137), Expect = 2e-10
 Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 9/95 (9%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV-------KPSCSLTPTE 244
           T LD  RA   +A   G+   +V    + G+   T +P            K     T   
Sbjct: 1   TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWL 60

Query: 245 IDYLTDRIQNGGTEVVEAKTG--AGSATLSMCRHM 277
            +  T  +Q  G  +++      A S  +S+   +
Sbjct: 61  EEEFTITVQKRGGALIQKWGRSSAASTAVSIADAI 95

>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 174

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

 Score = 55.3 bits (132), Expect = 5e-10
 Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 10/94 (10%)

Query: 193 MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTE-------- 244
           MLD  R   +VA+ L + PR+V   V+G H    +  +         +            
Sbjct: 3   MLDSGRFRRYVADALSVSPRDVQATVIGTHGDCMVPLVRYITVNGYPIQKFIKDGVVTEK 62

Query: 245 -IDYLTDRIQNGGTEVVEAKTGAGSATLSMCRHM 277
            ++ + +  +  G E+V    G GSA  +     
Sbjct: 63  QLEEIAEHTKVSGGEIV-RFLGQGSAYYAPAASA 95

>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.9 bits (131), Expect = 6e-10
 Identities = 14/74 (18%), Positives = 24/74 (32%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDR 251
             LD  R    + E LG++P      V+G H   ++           +L        TD+
Sbjct: 3   CNLDSARFRYLIGEKLGVNPTSCHGWVLGEHGDSSVPIWSGVNVAGVTLKSLNPAIGTDK 62

Query: 252 IQNGGTEVVEAKTG 265
            +     V +    
Sbjct: 63  NKQHWKNVHKQVVE 76

>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 161

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 54.1 bits (129), Expect = 1e-09
 Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 4/89 (4%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS---LTPTEIDYL 248
             LD  R    ++E      + V+  ++G H G   +P+ S+V    +    +  E + L
Sbjct: 3   GRLDSARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQL 61

Query: 249 TDRIQNGGTEVVEAKTGAGSATLSMCRHM 277
              +Q    +V+E K            HM
Sbjct: 62  LGDLQESAMDVIERKGATEWGPARGVAHM 90

>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 165

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 52.9 bits (126), Expect = 3e-09
 Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 9/102 (8%)

Query: 193 MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL---------LSQVKPSCSLTPT 243
           +LD  R   ++++ L + PR+V+  +VG H    +L           L +   +  ++  
Sbjct: 2   VLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDA 61

Query: 244 EIDYLTDRIQNGGTEVVEAKTGAGSATLSMCRHMLLPSLPML 285
           E++ + DR  N   E+V        A  +    M    L  L
Sbjct: 62  ELEAIFDRTVNTALEIVNLHASPYVAPAAAIIEMAESYLKDL 103

>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 173

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 50.5 bits (120), Expect = 2e-08
 Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 8/95 (8%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCSLTPTE--I 245
           T LD  RA   +A+  G     +    V G+   T+ P L   +    P+  L   E   
Sbjct: 2   TRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDMEWYE 61

Query: 246 DYLTDRIQNGGTEVVEAKTG--AGSATLSMCRHML 278
                 +   G  +++A+    A SA  +   H+ 
Sbjct: 62  KVFIPTVAQRGAAIIQARGASSAASAANAAIEHIR 96

>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]} Length = 171

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Aquaspirillum arcticum [TaxId: 87645]

 Score = 48.7 bits (115), Expect = 1e-07
 Identities = 9/46 (19%), Positives = 17/46 (36%)

Query: 194 LDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS 239
           LD  RA + +A   G     ++   V G+   T+       +   +
Sbjct: 3   LDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQIDGA 48

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	289
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	100.0
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	100.0
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	100.0
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	100.0
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	100.0
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	100.0
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	100.0
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	100.0
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	100.0
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	100.0
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	100.0
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	100.0
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	100.0
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	100.0
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	99.98
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	99.98
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	99.98
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.97
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	99.97
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	99.97
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	99.94
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	99.92
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	99.92
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	99.9
d1guza2	163	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	99.8
d1mlda2	169	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.8
d1uxja2	164	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	99.79
d1llda2	170	Lactate dehydrogenase {Bifidobacterium longum, str	99.78
d1pzga2	174	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	99.78
d1ojua2	152	Lactate dehydrogenase {Archaeon Archaeoglobus fulg	99.78
d2cmda2	167	Malate dehydrogenase {Escherichia coli [TaxId: 562	99.77
d7mdha2	188	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	99.76
d1ez4a2	171	Lactate dehydrogenase {Lactobacillus pentosus [Tax	99.76
d1hyha2	163	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	99.75
d1y6ja2	169	Lactate dehydrogenase {Clostridium thermocellum [T	99.75
d5mdha2	179	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.75
d1a5za2	172	Lactate dehydrogenase {Thermotoga maritima [TaxId:	99.74
d1o6za2	161	Malate dehydrogenase {Archaeon Haloarcula marismor	99.72
d1t2da2	165	Lactate dehydrogenase {Malaria parasite (Plasmodiu	99.71
d1i0za2	172	Lactate dehydrogenase {Human (Homo sapiens), heart	99.71
d1llca2	172	Lactate dehydrogenase {Lactobacillus casei [TaxId:	99.69
d1ldna2	168	Lactate dehydrogenase {Bacillus stearothermophilus	99.68
d1hyea2	168	MJ0490, lactate/malate dehydrogenase {Archaeon Met	99.68
d2ldxa2	172	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	99.65
d1ldma2	169	Lactate dehydrogenase {Dogfish (Squalus acanthias)	99.64
d1y7ta2	173	Malate dehydrogenase {Thermus thermophilus [TaxId:	99.62
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	99.53
d1b8pa2	171	Malate dehydrogenase {Aquaspirillum arcticum [TaxI	99.52
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	99.07
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	98.95
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	98.91
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	98.76
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	98.75
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	98.72
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	98.68
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	98.67
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	98.67
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.66
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	98.56
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	98.55
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	98.55
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	98.54
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	98.53
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.51
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	98.45
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	98.43
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	98.42
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	98.35
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	98.34
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	98.31
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	98.3
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	98.29
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	98.21
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	98.21
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	98.18
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	98.17
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	98.17
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	98.13
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	98.12
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	98.1
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	98.08
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	98.07
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	98.04
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	98.03
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	97.96
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	97.96
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	97.92
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	97.92
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	97.83
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.78
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	97.77
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	97.76
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	97.75
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	97.72
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.67
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.66
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	97.63
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.61
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	97.6
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	97.6
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.48
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	97.47
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	97.46
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	97.45
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	97.42
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	97.4
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	97.39
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	97.36
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	97.3
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	97.27
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	97.26
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	97.25
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.25
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.23
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	97.22
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	97.2
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	97.19
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	97.16
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	97.12
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	97.06
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	97.06
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	97.06
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	97.06
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	97.06
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.05
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	97.05
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	97.02
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	97.02
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	97.0
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	97.0
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	96.99
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	96.97
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	96.96
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	96.96
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	96.95
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	96.95
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	96.95
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	96.9
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	96.9
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	96.9
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	96.89
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	96.89
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	96.88
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	96.88
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	96.85
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	96.85
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	96.82
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	96.8
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.8
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	96.79
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	96.78
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	96.77
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	96.76
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	96.75
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	96.74
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	96.73
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	96.72
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	96.72
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.7
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	96.67
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	96.64
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	96.64
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	96.6
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	96.6
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.58
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	96.54
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	96.48
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.44
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	96.41
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.4
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	96.35
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	96.29
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	96.29
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	96.23
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	96.2
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.2
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	96.18
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	96.15
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	96.12
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	96.09
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	96.08
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	96.08
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	96.04
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.94
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	95.92
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.9
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	95.89
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.87
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	95.84
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.81
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.75
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	95.74
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	95.72
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	95.68
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	95.62
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	95.6
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	95.6
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	95.58
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	95.56
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	95.53
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.5
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	95.49
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	95.48
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	95.41
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	95.41
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.39
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.36
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.36
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.34
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	95.33
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	95.32
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	95.32
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	95.31
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.27
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	95.21
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	95.19
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.18
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	95.13
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	95.1
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.06
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	95.04
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	94.98
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	94.98
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	94.95
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	94.88
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	94.88
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	94.88
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	94.86
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	94.8
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	94.73
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	94.6
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	94.57
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	94.53
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	94.44
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	94.4
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	94.35
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	94.29
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	94.27
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	94.19
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	94.17
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	94.15
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	94.14
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.11
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	94.08
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	94.07
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	94.06
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	94.03
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	93.99
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	93.97
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	93.92
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	93.89
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	93.83
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	93.81
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	93.73
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	93.72
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	93.69
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	93.64
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	93.61
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	93.59
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	93.59
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	93.57
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	93.57
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	93.45
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	93.29
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	93.26
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	93.2
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	93.12
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	93.11
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.09
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	93.07
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	92.97
d1rq2a1	198	Cell-division protein FtsZ {Mycobacterium tubercul	92.95
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	92.91
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	92.83
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	92.72
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	92.71
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.71
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	92.59
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	92.56
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	92.49
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	92.38
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	92.0
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	91.97
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	91.92
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	91.87
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	91.85
d1ofua1	198	Cell-division protein FtsZ {Pseudomonas aeruginosa	91.57
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	91.16
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	91.04
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	90.87
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	90.74
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	90.73
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	90.57
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	90.53
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	90.48
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	90.39
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	90.05
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	89.88
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	89.75
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	89.68
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	89.52
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	89.35
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	89.2
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	89.03
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	88.83
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	88.8
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	88.76
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	88.68
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	88.63
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	88.57
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	88.45
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	88.41
d1ls1a2	207	GTPase domain of the signal sequence recognition p	88.27
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	88.22
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	88.04
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	87.76
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	87.73
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	87.69
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	87.47
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	87.37
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	87.23
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	87.23
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	87.22
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	87.2
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	87.18
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	87.0
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	86.72
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	86.41
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	86.22
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	86.18
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	85.37
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	85.29
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	85.28
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	84.76
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	84.37
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	84.21
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	84.01
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	83.84
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	83.74
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	83.36
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	83.33
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	83.08
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	82.77
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	82.59
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	82.24
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	82.08
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	82.0
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	81.93
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	81.9
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	81.83
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	81.56
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	81.36
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	80.76
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	80.06

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=6.8e-37  Score=251.85  Aligned_cols=143  Identities=65%  Similarity=1.102  Sum_probs=134.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCCCC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRK  127 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~~~  127 (289)
                      ||+||||+|+||+++|+.|+.+++++||+|+|+++.+++++|+.|.........+..+++++++++|||+||+++|.|++
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~~~   81 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRK   81 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCCC
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcCCC
Confidence            89999977999999999999999999999999998889999999987666655544456777999999999999999999


Q ss_pred             CCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEE
Q 022947          128 PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (289)
Q Consensus       128 ~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG  190 (289)
                      +|++|.+++..|.++++++++.|.+++|+++++++|||+|+||+++++++++.++||++||||
T Consensus        82 ~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvD~~t~~~~~~~kk~~~~p~~rViG  144 (144)
T d1mlda1          82 PGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFG  144 (144)
T ss_dssp             TTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEE
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhhhHHHHHHHHHHhcCCCcccccC
Confidence            999999999999999999999999999999999999999999999999999999999999998

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.9e-36  Score=248.34  Aligned_cols=143  Identities=59%  Similarity=0.964  Sum_probs=132.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHHh-CCCccEEEEEeCCC-chhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~-~g~~~eI~LvD~~~-~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      |||+|||++|+||+++|+.|+. .++.+||+|+|+++ .+|+++||.|.........+.+++++ ++++|||+||+|+|.
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~-~~~~~aDvvvitaG~   79 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDAT-PALEGADVVLISAGV   79 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCH-HHHTTCSEEEECCSC
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCc-cccCCCCEEEECCCc
Confidence            7999999779999999998875 47889999999987 67999999998766666666666676 789999999999999


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEE
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG  190 (289)
                      |+++|++|.|++..|.+++++++++|.+++|+++++++|||+|+|+|++++++++.++||++|+||
T Consensus        80 ~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtNPvD~m~~~~~~v~~~~~~l~~~RviG  145 (145)
T d2cmda1          80 RRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFG  145 (145)
T ss_dssp             CCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHHHHHHHHTTCCCGGGEEE
T ss_pred             cCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccCCchHHHHHHHHHHHHcCCCChhhccC
Confidence            999999999999999999999999999999999999999999999999999999999999999998

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=100.00  E-value=5.1e-36  Score=246.27  Aligned_cols=140  Identities=27%  Similarity=0.429  Sum_probs=124.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      |.||+|||+ |+||+++|+.|+.+++++||+|+|+++  ++|+++||+|...+.....+..++++ ++++|||+||+++|
T Consensus         1 p~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~-~~~~daDvVVitaG   78 (143)
T d1llda1           1 PTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EICRDADMVVITAG   78 (143)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGGTTCSEEEECCC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCH-HHhhCCcEEEEecc
Confidence            469999998 999999999999999999999999988  78999999998542211112224566 78999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~  191 (289)
                      .|+++|++|.|++..|.+++++++++|++++|+++++++|||+|+||+++    ++.+|||++||||+
T Consensus        79 ~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvDvmt~~~----~~~sg~p~~rViG~  142 (143)
T d1llda1          79 PRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDIATHVA----QKLTGLPENQIFGS  142 (143)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHH----HHHHTCCTTSEEEC
T ss_pred             cccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCCchHHHHHHH----HHHHCCChhhccCC
Confidence            99999999999999999999999999999999999999999999999764    67789999999997

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=2.5e-35  Score=241.92  Aligned_cols=138  Identities=29%  Similarity=0.495  Sum_probs=123.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccC--CceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~--~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      |||+|||+ |+||+++|+.|+.+++++||+|+|+++  ++|+++||.|+..  ....+.. .++|+ +++++||+||+++
T Consensus         1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~-~~~d~-~~~~~adiVvita   77 (142)
T d1ojua1           1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIV-GGADY-SLLKGSEIIVVTA   77 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEE-EESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccc-cCCCH-HHhccccEEEEec
Confidence            79999998 999999999999999999999999998  6899999999753  1222222 24576 8999999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022947          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (289)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~  191 (289)
                      |.|+++|++|.+++.+|+++++++++++++++|+++++++|||+|+|||++    ++.++|||+||||+
T Consensus        78 g~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtNPvD~~t~~~----~k~sg~p~~rViG~  142 (142)
T d1ojua1          78 GLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYIM----WKESGKPRNEVFGM  142 (142)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHHHHH----HHHSCCCTTSEEEC
T ss_pred             cccCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecCChHHHHHHH----HHHHCCChhcEecC
Confidence            999999999999999999999999999999999999999999999999754    67889999999996

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=3.3e-35  Score=242.79  Aligned_cols=139  Identities=25%  Similarity=0.360  Sum_probs=124.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCC--ceEEEEecCCCHHhhhCCCCEEEE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIVII  120 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~--~~v~~~~~t~d~~eal~~aDiVIi  120 (289)
                      ...||+|||| |+||+++|+.|++.++++||+|+|+++  ++|+++||.|+..+  ..+...  +.|+ ++++|||+||+
T Consensus         5 ~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~--~~d~-~~l~daDvvvi   80 (148)
T d1ldna1           5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIW--HGDY-DDCRDADLVVI   80 (148)
T ss_dssp             TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEE--ECCG-GGTTTCSEEEE
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEE--ECCH-HHhccceeEEE
Confidence            3569999998 999999999999999999999999988  68999999998642  233332  3465 88999999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022947          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (289)
Q Consensus       121 tag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~  191 (289)
                      ++|.++++|++|.|++.+|+++++++++.|++++|+++++++|||+|+|||++    ++.+||||+||||+
T Consensus        81 tag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNPvd~~t~~~----~k~sg~p~~rViG~  147 (148)
T d1ldna1          81 CAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYAT----WKFSGLPHERVIGS  147 (148)
T ss_dssp             CCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHH----HHHHTCCGGGEEEC
T ss_pred             ecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCccHHHHHHH----HHHHCcChhheecC
Confidence            99999999999999999999999999999999999999999999999999764    66789999999997

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=100.00  E-value=1.4e-34  Score=241.55  Aligned_cols=139  Identities=25%  Similarity=0.392  Sum_probs=123.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      .+||+|||+ |+||+++++.|+.+++++||+|+|+++  ++|+++||.|..............|| +++++||+||++||
T Consensus        20 ~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~-~~~~~adiVVitAg   97 (160)
T d1i0za1          20 NNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDY-SVTANSKIVVVTAG   97 (160)
T ss_dssp             SSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSG-GGGTTCSEEEECCS
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccch-hhcccccEEEEecC
Confidence            569999998 999999999999999999999999987  78999999997642111111234565 88999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEE
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG  190 (289)
                      .++++|++|++++..|+++++++++.|++++|+++++++|||+|+||+++    ++.+|||++||||
T Consensus        98 ~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtNPvDv~t~~~----~k~sglp~~rViG  160 (160)
T d1i0za1          98 VRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVDILTYVT----WKLSGLPKHRVIG  160 (160)
T ss_dssp             CCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH----HHHHCCCGGGEEE
T ss_pred             CccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchHHHHHHH----HHHHCcCcccccC
Confidence            99999999999999999999999999999999999999999999999765    6677999999998

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=100.00  E-value=2.4e-34  Score=236.02  Aligned_cols=137  Identities=28%  Similarity=0.410  Sum_probs=116.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccC-CceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~-~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      +||+|||+ |+||+++++.|+.+++++||+|+|+++  ++|+++||.|+.. ......+  +.++ ++++|||+||+++|
T Consensus         2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~--~~~~-~~~~~adivvitag   77 (142)
T d1y6ja1           2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLY--AGDY-SDVKDCDVIVVTAG   77 (142)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC----CG-GGGTTCSEEEECCC
T ss_pred             CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEe--eCcH-HHhCCCceEEEecc
Confidence            59999998 999999999999999999999999988  6899999999754 2344433  3455 78999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~  191 (289)
                      .++++|++|.+++.+|++++++++++|++++|+++++++|||+|+||+++    ++.+|||++||||+
T Consensus        78 ~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvdv~t~~~----~k~sg~p~~rViG~  141 (142)
T d1y6ja1          78 ANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDIITYMI----QKWSGLPVGKVIGS  141 (142)
T ss_dssp             C------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHHHHHHH----HHHHTCCTTTEEEC
T ss_pred             cccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecChHHHHHHHH----HHHHCCCccceecC
Confidence            99999999999999999999999999999999999999999999999754    67789999999997

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.4e-34  Score=236.80  Aligned_cols=137  Identities=29%  Similarity=0.515  Sum_probs=122.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccC-CceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~-~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      |||+|||+ |+||+++++.|+.+++++||+|+|+++  ++++++|+.|... .......  ++++ ++++|||+||+++|
T Consensus         1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~--~~~~-~~~~~adivvitag   76 (140)
T d1a5za1           1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIY--AGDY-ADLKGSDVVIVAAG   76 (140)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEE--ECCG-GGGTTCSEEEECCC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhcccccccccccccccc--CCcH-HHhcCCCEEEEecc
Confidence            79999998 999999999999999999999999988  6889999999753 2233333  3455 78999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~  191 (289)
                      .++++|++|.|++.+|.++++++++.|+++||+++++++|||+|+||+++    ++.+||||+||||+
T Consensus        77 ~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtNPvd~~t~~~----~k~sg~p~~rViGt  140 (140)
T d1a5za1          77 VPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDVLTYFF----LKESGMDPRKVFGS  140 (140)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH----HHHHTCCTTTEEEC
T ss_pred             cccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCCcHHHHHHHH----HHHHCcCccceeCc
Confidence            99999999999999999999999999999999999999999999999764    66789999999995

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=2.2e-34  Score=236.06  Aligned_cols=136  Identities=29%  Similarity=0.426  Sum_probs=120.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC----chhHHhhhhcccC-CceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~----~~g~~~DL~~~~~-~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      ||+||||+|+||+++|+.|+.+++++||+|+|++.    ++|+++||.|... ....+..  +.+| ++++|||+||++|
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~--~~~~-~~~~~aDiVvita   78 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVR--QGGY-EDTAGSDVVVITA   78 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEE--ECCG-GGGTTCSEEEECC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEe--eCCH-HHhhhcCEEEEec
Confidence            89999966999999999999999999999999864    5688999999543 2233332  2355 7899999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEE
Q 022947          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (289)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG  190 (289)
                      |.|+++|++|.|++..|++++++++++|++++|+++++++|||+|+|||+    +++.+|||++||||
T Consensus        79 G~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtNPvDvmt~~----~~k~sg~~~~rViG  142 (142)
T d1o6za1          79 GIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLNRH----LYEAGDRSREQVIG  142 (142)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHHHHHHH----HHHHSSSCGGGEEE
T ss_pred             ccccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecChHHHHHHH----HHHHHCcCcccccC
Confidence            99999999999999999999999999999999999999999999999975    47789999999998

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=100.00  E-value=8.4e-35  Score=239.79  Aligned_cols=137  Identities=18%  Similarity=0.278  Sum_probs=116.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCC--ceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~--~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      +||+|||+ |+||+++++.|+.+++++||+|+|+++  ++|+++||.|+...  ......  +.|+ ++++|||+||+++
T Consensus         2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~--~~d~-~~l~~adiVVita   77 (146)
T d1hyha1           2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIV--INDW-AALADADVVISTL   77 (146)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEE--ESCG-GGGTTCSEEEECC
T ss_pred             CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCcccee--ccCH-HHhccccEEEEec
Confidence            59999998 999999999999999999999999988  68999999998532  233332  3465 7899999999999


Q ss_pred             CCCC----CCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022947          123 GVPR----KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (289)
Q Consensus       123 g~~~----~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~  191 (289)
                      |.++    ++|++|.+++..|+++++++++.|++++|+++++++|||+|+||+++    ++.+|||++||||+
T Consensus        78 G~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvD~~t~~~----~k~sg~p~~rViGt  146 (146)
T d1hyha1          78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVDVITALF----QHVTGFPAHKVIGT  146 (146)
T ss_dssp             SCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH----HHHHCCCGGGEEEC
T ss_pred             cccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCcHHHHHHHH----HHHhCCCccceeCc
Confidence            9876    67899999999999999999999999999999999999999999764    67789999999995

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=100.00  E-value=8.1e-34  Score=232.66  Aligned_cols=138  Identities=35%  Similarity=0.528  Sum_probs=122.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccC--CceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~--~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      |||+|||| |+||+++++.|+..++++||+|+|+++  .+++++|+.|...  ....+.. .++++ ++++|||+||+++
T Consensus         1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~-~~~~~-~~~~dadvvvita   77 (142)
T d1guza1           1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVT-GSNDY-ADTANSDIVIITA   77 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEE-EESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEE-ecCCH-HHhcCCeEEEEEE
Confidence            79999998 999999999999999999999999998  5788899988753  2222222 23565 8899999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022947          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (289)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~  191 (289)
                      |.|+++|++|.+++.+|+++++++++.|+++||+++++++|||+|++|+++    ++.++||++||||+
T Consensus        78 g~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvd~~~~~~----~~~sg~p~~rviG~  142 (142)
T d1guza1          78 GLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHVA----WVRSGLPKERVIGM  142 (142)
T ss_dssp             SCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHHHHHHHH----HHHHCSCGGGEEEE
T ss_pred             ecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecCChHHHHHHH----HHHhCCChHhEeeC
Confidence            999999999999999999999999999999999999999999999999764    66779999999996

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.9e-34  Score=238.77  Aligned_cols=141  Identities=24%  Similarity=0.375  Sum_probs=123.8

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEc
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIit  121 (289)
                      .++.||+|||+ |+||+++|+.|+..++++||+|+|+++  ++|+++||.|+...........+.|+ +++++||+||++
T Consensus        17 ~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~-~~~~~adivvit   94 (159)
T d2ldxa1          17 LSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDY-NVSANSKLVIIT   94 (159)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSG-GGGTTEEEEEEC
T ss_pred             CCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccch-hhhccccEEEEe
Confidence            34569999998 999999999999999999999999987  68999999998642211111123465 789999999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEE
Q 022947          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (289)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG  190 (289)
                      +|.|+++|++|.|++..|+++++++++.|++++|+++++++|||+|+|||++    ++.+||||+||||
T Consensus        95 ag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtNPvDv~t~~~----~k~sg~p~~rV~G  159 (159)
T d2ldxa1          95 AGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNPVDILTYVV----WKISGFPVGRVIG  159 (159)
T ss_dssp             CSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSSSHHHHHHHH----HHHHCSCTTTEEE
T ss_pred             cccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCCcHHHHHHHH----HHHHCcCcccccC
Confidence            9999999999999999999999999999999999999999999999999764    6678999999998

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1.6e-33  Score=231.72  Aligned_cols=138  Identities=31%  Similarity=0.500  Sum_probs=119.8

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC----chhHHhhhhcccC--CceEEEE-ecCCCHHhhhCCCCEEE
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDT--NAVVRGF-LGQQQLEDALTGMDIVI  119 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~----~~g~~~DL~~~~~--~~~v~~~-~~t~d~~eal~~aDiVI  119 (289)
                      |||+||||+|+||+++|+.|+.+++++||+|+|+++    .+|+++||.|...  ...++.. ..++|+ ++++|||+||
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~-~~l~~aDvVV   79 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENL-RIIDESDVVI   79 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCG-GGGTTCSEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchH-HHhccceEEE
Confidence            799999977999999999999999999999999986    3678999999642  2333332 224455 8999999999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEE
Q 022947          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (289)
Q Consensus       120 itag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG  190 (289)
                      +|||.|+++|++|.|++..|+++++++++.+.+++|++++ ++|||+|+|||++    ++.++||++||||
T Consensus        80 itAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~ii-vVtNPvD~mt~~~----~k~sg~p~~rViG  145 (145)
T d1hyea1          80 ITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF-VITNPVDVMTYKA----LVDSKFERNQVFG  145 (145)
T ss_dssp             ECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEE-ECSSSHHHHHHHH----HHHHCCCTTSEEE
T ss_pred             EecccccCCCCChhhhhhhhHHHHHHHHHHHhccCCCeEE-EEcCchHHHHHHH----HHHHCcCcccccC
Confidence            9999999999999999999999999999999999998865 5899999999764    6678999999998

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=100.00  E-value=5.3e-34  Score=234.98  Aligned_cols=139  Identities=26%  Similarity=0.416  Sum_probs=114.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccC-CceEEEEecCCCHHhhhCCCCEEEEc
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIP  121 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~-~~~v~~~~~t~d~~eal~~aDiVIit  121 (289)
                      +.|||+|||+ |+||+++|+.|+++++++||+|+|+++  ++|+++||+|... .......  +.|| +++++||+||++
T Consensus         4 ~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~--~~d~-~~~~~adivvit   79 (146)
T d1ez4a1           4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIY--SGEY-SDCKDADLVVIT   79 (146)
T ss_dssp             TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEE--ECCG-GGGTTCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEe--eccH-HHhccccEEEEe
Confidence            3579999998 999999999999999999999999998  7899999999754 2222333  3466 789999999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022947          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (289)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~  191 (289)
                      +|.|+++|++|.+++..|+++++++++.|++++|+++++++|||+|+||+++    ++.++||++||||+
T Consensus        80 ag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtNPvdv~t~~~----~k~sg~p~~rViG~  145 (146)
T d1ez4a1          80 AGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYAT----WKFSGFPKERVIGS  145 (146)
T ss_dssp             CCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH----HHHHCCCGGGEEEC
T ss_pred             cccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCccHHHHHHH----HHHHCcCccceecC
Confidence            9999999999999999999999999999999999999999999999999764    66789999999997

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.98  E-value=9.2e-33  Score=229.43  Aligned_cols=140  Identities=32%  Similarity=0.570  Sum_probs=121.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccC--CceEEEEecCCCHHhhhCCCCEEEE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVII  120 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~--~~~v~~~~~t~d~~eal~~aDiVIi  120 (289)
                      +++||+|||+ |.||+++|+.|++.++ .||+|+|+++  ++|+++|+.|...  ...... ..+++++++++|||+||+
T Consensus         6 k~~KI~IIGa-G~VG~~lA~~l~~~~~-~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~adiVvi   82 (154)
T d1pzga1           6 RRKKVAMIGS-GMIGGTMGYLCALREL-ADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSV-RAEYSYEAALTGADCVIV   82 (154)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTC-CEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCE-EEECSHHHHHTTCSEEEE
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCC-ceEEEEEeccccchhHHHHHhhhccccCCeeEE-eccCchhhhhcCCCeEEE
Confidence            4679999998 9999999999998886 4899999998  6899999999742  111111 124577889999999999


Q ss_pred             cCCCCCCCCC-----chhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022947          121 PAGVPRKPGM-----TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (289)
Q Consensus       121 tag~~~~~g~-----~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~  191 (289)
                      ++|.++++|+     +|.+++..|+++++++++.++++||+++++++|||+|+||+++    ++.+|||++||||+
T Consensus        83 tag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsNPvd~lt~~~----~~~sg~p~~rViG~  154 (154)
T d1pzga1          83 TAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKVM----CEASGVPTNMICGM  154 (154)
T ss_dssp             CCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEEC
T ss_pred             ecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCCcHHHHHHHH----HHHhCcChhcEecC
Confidence            9999999985     8999999999999999999999999999999999999999765    66779999999996

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.98  E-value=7.4e-33  Score=229.00  Aligned_cols=138  Identities=30%  Similarity=0.554  Sum_probs=120.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccC--CceEEEEecCCCHHhhhCCCCEEEEc
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVIIP  121 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~--~~~v~~~~~t~d~~eal~~aDiVIit  121 (289)
                      +.||+|||+ |+||+++++.|+++++ .||+|+|+++  ++|+++|+.|...  ..+.... .++++ ++++|||+||++
T Consensus         3 ~~KI~IIGa-G~VG~~~a~~l~~~~l-~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~-~~~~~-~~~~~advvvit   78 (150)
T d1t2da1           3 KAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVS-GSNTY-DDLAGADVVIVT   78 (150)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC-CEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEE-EECCG-GGGTTCSEEEEC
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeccCCcceeeecchhhhccccCCCcEEE-ecccc-cccCCCcEEEEe
Confidence            469999998 9999999999998886 6999999988  6899999999753  2222222 13454 889999999999


Q ss_pred             CCCCCCCCCc-----hhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022947          122 AGVPRKPGMT-----RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (289)
Q Consensus       122 ag~~~~~g~~-----r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~  191 (289)
                      +|.++++|++     |++++..|.++++++++.++++||+++++++|||+|+|||++    ++.+|||++||||+
T Consensus        79 ag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNPvD~~t~~~----~~~sg~p~~rViG~  149 (150)
T d1t2da1          79 AGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMVQLL----HQHSGVPKNKIIGL  149 (150)
T ss_dssp             CSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHH----HHHHCCCGGGEEEC
T ss_pred             cccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchHHHHHHH----HHHHCCCchheecc
Confidence            9999999876     999999999999999999999999999999999999999764    67789999999997

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=99.98  E-value=6.8e-33  Score=227.28  Aligned_cols=135  Identities=27%  Similarity=0.542  Sum_probs=111.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccC----CceEEEEecCCCHHhhhCCCCEEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----NAVVRGFLGQQQLEDALTGMDIVI  119 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~----~~~v~~~~~t~d~~eal~~aDiVI  119 (289)
                      ++||+|||+ |+||+++|+.|+++++. |++|+|+++  ++++++|+.|...    ..++.   .++|+ +++++||+||
T Consensus         1 r~KI~IIGa-G~VG~~~A~~l~~~~l~-dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~---~~~d~-~~~~~advvv   74 (142)
T d1uxja1           1 RKKISIIGA-GFVGSTTAHWLAAKELG-DIVLLDIVEGVPQGKALDLYEASPIEGFDVRVT---GTNNY-ADTANSDVIV   74 (142)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCS-EEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEE---EESCG-GGGTTCSEEE
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhCCcc-eEEEEeeccccchhHHHHhhccccccCCCCEEE---ecCcH-HHhcCCCEEE
Confidence            359999998 99999999999998875 799999988  6889999999853    22333   24576 7899999999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEE
Q 022947          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (289)
Q Consensus       120 itag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG  190 (289)
                      +++|.|+++|++|.|++..|+++++++++.|.+++|+++++++|||+|+|||++    ++.+|||++||||
T Consensus        75 itag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtNPvDv~t~~~----~~~sglp~~rViG  141 (142)
T d1uxja1          75 VTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLA----AEVSGFPKERVIG  141 (142)
T ss_dssp             ECCSCC---------CHHHHHHHHHHHHHHHGGGCTTCEEEECSSSHHHHHHHH----HHHHCCCGGGEEE
T ss_pred             EeeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCCchHHHHHHH----HHHHCcCcccccC
Confidence            999999999999999999999999999999999999999999999999999875    6678999999999

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.97  E-value=1.1e-30  Score=216.62  Aligned_cols=143  Identities=25%  Similarity=0.390  Sum_probs=117.4

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCc-----cEEEEEeCCCc----hhHHhhhhcccCCceEEEEecCCCHHhhhCC
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLV-----SVLHLYDVVNT----PGVTADISHMDTNAVVRGFLGQQQLEDALTG  114 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~-----~eI~LvD~~~~----~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~  114 (289)
                      ++++||+||||+|+||+++++.|++++++     .+++|+|+++.    ++..+|+.++.. +....+..+.+.+++++|
T Consensus         1 s~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~   79 (154)
T d5mdha1           1 SEPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL-PLLKDVIATDKEEIAFKD   79 (154)
T ss_dssp             CCCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCC-TTEEEEEEESCHHHHTTT
T ss_pred             CCceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhccccc-ccccccccCcccccccCC
Confidence            46899999998899999999999876653     48999999873    334455566543 233322234456799999


Q ss_pred             CCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCC-cEEEEecCCCcccHHHHHHHHHHhC-CCCCCcEEEe
Q 022947          115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPK-AIVNLISNPVNSTVPIAAEVFKKVG-TYDPKRLLGV  191 (289)
Q Consensus       115 aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~-aiviv~tNPvd~~t~~~~~~~~~~~-~~~~~kviG~  191 (289)
                      +|+||+++|.|+++|++|.|++..|.++++++++.|.+++|+ +++|++|||+|+|||++    ++.+ |+|++||+|+
T Consensus        80 ~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNPvD~mt~v~----~k~s~g~P~~~v~~m  154 (154)
T d5mdha1          80 LDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTA----SKSAPSIPKENFSCL  154 (154)
T ss_dssp             CSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH----HHTCTTSCGGGEEEC
T ss_pred             ceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCcHHHHHHHH----HHHcCCCCHHHEeCC
Confidence            999999999999999999999999999999999999999975 56888999999999765    5666 9999999986

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=99.97  E-value=2.5e-30  Score=218.81  Aligned_cols=144  Identities=22%  Similarity=0.296  Sum_probs=122.9

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCc-----cEEEEEeCCC----chhHHhhhhcccCCceEEEEecCCCHHhhhCC
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLV-----SVLHLYDVVN----TPGVTADISHMDTNAVVRGFLGQQQLEDALTG  114 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~-----~eI~LvD~~~----~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~  114 (289)
                      +++.||+|+||+|+||+++++.|++.+++     .+|+|+|+++    ++|.++|+.|+.. +.+.....+++.++++++
T Consensus        22 k~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~-~~~~~~~~~~~~~~~~~~  100 (175)
T d7mdha1          22 KKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLY-PLLREVSIGIDPYEVFED  100 (175)
T ss_dssp             CCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTC-TTEEEEEEESCHHHHTTT
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhccccc-ccccCccccccchhhccC
Confidence            45679999998899999999999987654     3899999877    4678899999864 333333234566799999


Q ss_pred             CCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022947          115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (289)
Q Consensus       115 aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p-~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~  191 (289)
                      +|+||+++|.|+++|++|.|++..|.++++++++.|++++| +++|+++|||+|++|+++.   +.++++|++||+||
T Consensus       101 aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~~t~ia~---k~a~~ip~~~i~~m  175 (175)
T d7mdha1         101 VDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALICL---KNAPDIPAKNFHAL  175 (175)
T ss_dssp             CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHH---HTCTTSCGGGEEEC
T ss_pred             CceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHHHHHHHH---HHCCCCCHHHEeCC
Confidence            99999999999999999999999999999999999999986 8999999999999998752   44689999999986

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=2.2e-30  Score=214.85  Aligned_cols=143  Identities=25%  Similarity=0.443  Sum_probs=118.6

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccE-----EEEEeCCC----chhHHhhhhcccCCceEEEEecCCCHHhhhCC
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSV-----LHLYDVVN----TPGVTADISHMDTNAVVRGFLGQQQLEDALTG  114 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~e-----I~LvD~~~----~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~  114 (289)
                      ++++||+||||+|+||+++++.|++++++++     +.|+|.+.    ..+.++|+.+... +..+.+..+++.+++++|
T Consensus         2 ~~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   80 (154)
T d1y7ta1           2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAF-PLLAGLEATDDPKVAFKD   80 (154)
T ss_dssp             CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTC-TTEEEEEEESCHHHHTTT
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhcccc-ccccccccCCchhhhccc
Confidence            3578999999889999999999999887654     45566554    3566788888753 333333334455699999


Q ss_pred             CCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEE
Q 022947          115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (289)
Q Consensus       115 aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p-~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG  190 (289)
                      ||+||+++|.++++|++|.|++..|+++++++++.+++++| +++++++|||+|+|||++   +++++|||++|||.
T Consensus        81 advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvDv~t~~a---~k~asg~p~~rvia  154 (154)
T d1y7ta1          81 ADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIA---YKNAPGLNPRNFTA  154 (154)
T ss_dssp             CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH---HHTCTTSCGGGEEE
T ss_pred             ccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHHHHHHHH---HHHcCCCcHHhccC
Confidence            99999999999999999999999999999999999999985 899999999999999875   34468999999985

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.94  E-value=3e-27  Score=198.74  Aligned_cols=139  Identities=17%  Similarity=0.183  Sum_probs=110.1

Q ss_pred             CCEEEEEcCCCccHHHHH--HHHHhCCC--ccEEEEEeCCC--chhHHhhhhccc----CCceEEEEecCCCHHhhhCCC
Q 022947           46 GFKVAVLGAAGGIGQPLA--MLMKINPL--VSVLHLYDVVN--TPGVTADISHMD----TNAVVRGFLGQQQLEDALTGM  115 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la--~~L~~~g~--~~eI~LvD~~~--~~g~~~DL~~~~----~~~~v~~~~~t~d~~eal~~a  115 (289)
                      ++||+|||| |++|.+.+  ..++....  ..||+|+|+++  .+++++|+.+..    .....+.. .++|++++++||
T Consensus         1 k~KI~iIGa-Gs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~-~~td~~~al~ga   78 (169)
T d1s6ya1           1 RLKIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIH-LTLDRRRALDGA   78 (169)
T ss_dssp             CEEEEEETT-TCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEE-EESCHHHHHTTC
T ss_pred             CcEEEEECC-ChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceee-ecCCchhhcCCC
Confidence            479999998 99886543  34444332  46999999988  568888887742    12233332 245778999999


Q ss_pred             CEEEEcCCCCCCCCCchhhH--------------------HHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHH
Q 022947          116 DIVIIPAGVPRKPGMTRDDL--------------------FNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE  175 (289)
Q Consensus       116 DiVIitag~~~~~g~~r~d~--------------------~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~  175 (289)
                      |+||+++|.+++++++|.++                    +.+|+++++++++.|+++|||||++++|||+|+||+++  
T Consensus        79 DvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vtNPvdv~t~~~--  156 (169)
T d1s6ya1          79 DFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAV--  156 (169)
T ss_dssp             SEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH--
T ss_pred             CEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeCChHHHHHHHH--
Confidence            99999999998887777665                    46899999999999999999999999999999999765  


Q ss_pred             HHHHhCCCCCCcEEEee
Q 022947          176 VFKKVGTYDPKRLLGVT  192 (289)
Q Consensus       176 ~~~~~~~~~~~kviG~t  192 (289)
                        ++.  +|++||||+|
T Consensus       157 --~k~--~p~~kviGlC  169 (169)
T d1s6ya1         157 --LRY--TKQEKVVGLC  169 (169)
T ss_dssp             --HHH--CCCCCEEECC
T ss_pred             --HHH--CCCCCEEeeC
Confidence              454  5889999997

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.92  E-value=4.8e-26  Score=190.89  Aligned_cols=138  Identities=18%  Similarity=0.221  Sum_probs=107.6

Q ss_pred             CCCEEEEEcCCCccHHHHHH--HHHhCC--CccEEEEEeCCC--chhHHhhhhccc--CCceEEEEecCCCHHhhhCCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAM--LMKINP--LVSVLHLYDVVN--TPGVTADISHMD--TNAVVRGFLGQQQLEDALTGMD  116 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~--~L~~~g--~~~eI~LvD~~~--~~g~~~DL~~~~--~~~~v~~~~~t~d~~eal~~aD  116 (289)
                      +..||+|||| |++|.+.+.  .+....  ..+||+|+|+++  +++.+.++.+..  .....+.. .++|++|+++|||
T Consensus         2 k~~KI~iIGa-Gsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~eal~~AD   79 (167)
T d1u8xx1           2 KSFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFA-ATTDPEEAFTDVD   79 (167)
T ss_dssp             CCEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEE-EESCHHHHHSSCS
T ss_pred             CCceEEEECC-ChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceE-ecCChhhccCCCC
Confidence            5679999999 999987653  332222  247999999998  455566666543  12233322 2457889999999


Q ss_pred             EEEEcCCCCCCCCCchhhHHH--------------------hhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHH
Q 022947          117 IVIIPAGVPRKPGMTRDDLFN--------------------INAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV  176 (289)
Q Consensus       117 iVIitag~~~~~g~~r~d~~~--------------------~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~  176 (289)
                      +||+++|.++++|++|.+++.                    +|+++++++++.|+++||+||++++|||+|+||+++   
T Consensus        80 ~Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~P~A~li~~TNPvdv~t~~~---  156 (167)
T d1u8xx1          80 FVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEAT---  156 (167)
T ss_dssp             EEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHH---
T ss_pred             EEEECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHH---
Confidence            999999999999999988754                    579999999999999999999999999999999765   


Q ss_pred             HHHhCCCCCCcEEE
Q 022947          177 FKKVGTYDPKRLLG  190 (289)
Q Consensus       177 ~~~~~~~~~~kviG  190 (289)
                       ++.  +|++|||.
T Consensus       157 -~k~--~P~~rVI~  167 (167)
T d1u8xx1         157 -RRL--RPNSKILN  167 (167)
T ss_dssp             -HHH--STTCCEEE
T ss_pred             -HHH--CCcccccC
Confidence             444  69999973

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=1.4e-26  Score=193.24  Aligned_cols=137  Identities=15%  Similarity=0.249  Sum_probs=103.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhC----CCccEEEEEeCCC-chhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEc
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKIN----PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~----g~~~eI~LvD~~~-~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIit  121 (289)
                      |||+|||| |++|++.++.....    ...+||+|+|+++ ..+.+.|+.+........... +++.+++++|||+||++
T Consensus         1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~-t~~~~~~l~~aDvVVit   78 (162)
T d1up7a1           1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLI-SDTFEGAVVDAKYVIFQ   78 (162)
T ss_dssp             CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEE-CSSHHHHHTTCSEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEE-ecCcccccCCCCEEEEe
Confidence            79999999 99999988643322    2357999999998 334566776654322233322 34667999999999999


Q ss_pred             CCCCCCCCCchhhHHHh--------------------hHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhC
Q 022947          122 AGVPRKPGMTRDDLFNI--------------------NAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (289)
Q Consensus       122 ag~~~~~g~~r~d~~~~--------------------N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~  181 (289)
                      +|.+++++++|.+++..                    +++.+.++.+ +.++||+||++++|||+|+||+++    ++. 
T Consensus        79 a~~~~~~~~~r~~~i~~~~~i~~~~~~g~~g~~~~~r~~~~~~~i~~-~~~~~p~a~~i~vtNPvdiit~~~----~~~-  152 (162)
T d1up7a1          79 FRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVD-TVRKTSNATIVNFTNPSGHITEFV----RNY-  152 (162)
T ss_dssp             CCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHH-HHHHTTCCEEEECSSSHHHHHHHH----HHT-
T ss_pred             cccCCCCCcchHhhhhhhcCeeeeeccCcchhhhhhhhhHHHHHHhh-hhccCCCeEEEEeCCHHHHHHHHH----HHh-
Confidence            99998888888776554                    4566666655 778899999999999999999654    555 


Q ss_pred             CCCCCcEEEee
Q 022947          182 TYDPKRLLGVT  192 (289)
Q Consensus       182 ~~~~~kviG~t  192 (289)
                       +|++||||+|
T Consensus       153 -~p~~rviGlC  162 (162)
T d1up7a1         153 -LEYEKFIGLC  162 (162)
T ss_dssp             -TCCSSEEECC
T ss_pred             -CCCCCEEeeC
Confidence             5789999997

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=3.7e-24  Score=180.00  Aligned_cols=136  Identities=19%  Similarity=0.181  Sum_probs=104.3

Q ss_pred             CCEEEEEcCCCccHHHHHH--HHHhC-CC-ccEEEEEeCCC--chhHHhhhhcccC--CceEEEEecCCCHHhhhCCCCE
Q 022947           46 GFKVAVLGAAGGIGQPLAM--LMKIN-PL-VSVLHLYDVVN--TPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDI  117 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~--~L~~~-g~-~~eI~LvD~~~--~~g~~~DL~~~~~--~~~v~~~~~t~d~~eal~~aDi  117 (289)
                      .|||+|||| |++|++++.  .++.. .+ ..||+|+|+++  +++...|+.|...  ....+.. .++|++++++|||+
T Consensus         2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~-~~td~~eaL~dad~   79 (171)
T d1obba1           2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFE-KTMNLDDVIIDADF   79 (171)
T ss_dssp             CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEE-EESCHHHHHTTCSE
T ss_pred             CcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEE-EeCChhhcccCCCe
Confidence            589999998 999988653  34433 32 35999999998  5677778887531  2233332 35688999999999


Q ss_pred             EEEcCCC------------------CCCCCCchhhH--------HHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHH
Q 022947          118 VIIPAGV------------------PRKPGMTRDDL--------FNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP  171 (289)
Q Consensus       118 VIitag~------------------~~~~g~~r~d~--------~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~  171 (289)
                      ||++++.                  +++++++|.+.        +.+|+++++++++.|+++||++|++++|||+|+||+
T Consensus        80 Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~a~~i~~TNPvdv~t~  159 (171)
T d1obba1          80 VINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTT  159 (171)
T ss_dssp             EEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHHHHH
T ss_pred             EeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCcCeEEEEECChHHHHHH
Confidence            9998654                  44556666654        568999999999999999999999999999999997


Q ss_pred             HHHHHHHHhCCCCCCcEEE
Q 022947          172 IAAEVFKKVGTYDPKRLLG  190 (289)
Q Consensus       172 ~~~~~~~~~~~~~~~kviG  190 (289)
                      ++    ++.+++   |+||
T Consensus       160 ~~----~k~~~~---k~iG  171 (171)
T d1obba1         160 LV----TRTVPI---KAVG  171 (171)
T ss_dssp             HH----HHHSCS---EEEE
T ss_pred             HH----HHhcCC---CccC
Confidence            54    566654   8887

>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=99.80  E-value=3.7e-20  Score=153.89  Aligned_cols=95  Identities=27%  Similarity=0.474  Sum_probs=87.6

Q ss_pred             eccHHHHHHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCCC-----CChhhHHHHHHHHHhhhHHHhhhcCCCC
Q 022947          193 MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS-----LTPTEIDYLTDRIQNGGTEVVEAKTGAG  267 (289)
Q Consensus       193 ~lds~R~~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~-----~~~~~~~~i~~~v~~~g~~i~~~k~g~g  267 (289)
                      +||++||+++||+++|++|++|+++||||||+ ++||+||++++++.     ++++.++++.++++++|++|++.+ |+|
T Consensus         3 ~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-s~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~~-~kg   80 (163)
T d1guza2           3 VLDAARFRSFIAMELGVSMQDINACVLGGHGD-AMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEHL-KQG   80 (163)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEECCEEECSGG-GEEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHHHH-SSS
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-CcccCHhhcccCCccccccCCHHHHHHHHHHHHHHHHHHHHHh-cCC
Confidence            59999999999999999999999999999998 89999999999652     566778899999999999999975 789


Q ss_pred             cchHHHHHHHHHHHHHHhcCCC
Q 022947          268 SATLSMCRHMLLPSLPMLVSEA  289 (289)
Q Consensus       268 ~t~~s~A~a~~~~~~ail~~~~  289 (289)
                      ++.|++|.++.+++++++.|+.
T Consensus        81 sa~~a~~~~~~~~~~~i~~~~~  102 (163)
T d1guza2          81 SAFYAPASSVVEMVESIVLDRK  102 (163)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCC
T ss_pred             CcchhHHHHHHHHHHheeccCC
Confidence            9999999999999999999863

>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.80  E-value=6.5e-20  Score=152.98  Aligned_cols=97  Identities=55%  Similarity=0.795  Sum_probs=89.7

Q ss_pred             eeeccHHHHHHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCCCCChhhHHHHHHHHHhhhHHHhhhcCCCCcch
Q 022947          191 VTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT  270 (289)
Q Consensus       191 ~t~lds~R~~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~  270 (289)
                      +|.|||+||+++||++|+++|++|+++|+||||+++|+|+||++.++..++.++++++.++++++|++|++.|++++++.
T Consensus         1 ~T~LDs~R~~~~la~~l~v~~~~V~~~ViGeHg~~t~vp~~s~~~~~~~~~~~~~~~l~~~v~~~~~eii~~k~~~~~~~   80 (169)
T d1mlda2           1 VTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSAT   80 (169)
T ss_dssp             CCHHHHHHHHHHHHHHTTCCGGGCBCCEEECSSGGGEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCC
T ss_pred             CcccHHHHHHHHHHHHHCcCHHHeeEEEEEcCCCcceeehhhhhccCCCCcHHHHHHHHHHHHHhHHHHHHhhcCcChHh
Confidence            37899999999999999999999999999999887999999999888889999999999999999999999998888889


Q ss_pred             HHHHHHHHHHHHHHhcC
Q 022947          271 LSMCRHMLLPSLPMLVS  287 (289)
Q Consensus       271 ~s~A~a~~~~~~ail~~  287 (289)
                      ++++.++++++..++++
T Consensus        81 ~~~~~a~~~~~~~i~~~   97 (169)
T d1mlda2          81 LSMAYAGARFVFSLVDA   97 (169)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccc
Confidence            99999999999888753

>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=99.79  E-value=5.3e-20  Score=153.05  Aligned_cols=95  Identities=25%  Similarity=0.394  Sum_probs=87.2

Q ss_pred             eccHHHHHHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCC-----CCChhhHHHHHHHHHhhhHHHhhhcCCCC
Q 022947          193 MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-----SLTPTEIDYLTDRIQNGGTEVVEAKTGAG  267 (289)
Q Consensus       193 ~lds~R~~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~-----~~~~~~~~~i~~~v~~~g~~i~~~k~g~g  267 (289)
                      .||++||+++||++||++|.+|+++||||||+ ++||+||++++++     .+++..++++.++++++|++|++.+ +||
T Consensus         3 ~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~v~~~s~~~i~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~~-~kg   80 (164)
T d1uxja2           3 VLDAARYRTFIAMEAGVSVKDVQAMLMGGHGD-EMVPLPRFSTISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLL-KTG   80 (164)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEEECCEECSGG-GEECCGGGEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHH-SSS
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-ceeeeeeeeecCCCchhhccchhhHHHHHHHHHHHHHHHHHHH-hcC
Confidence            59999999999999999999999999999998 9999999999864     2456678999999999999999876 689


Q ss_pred             cchHHHHHHHHHHHHHHhcCCC
Q 022947          268 SATLSMCRHMLLPSLPMLVSEA  289 (289)
Q Consensus       268 ~t~~s~A~a~~~~~~ail~~~~  289 (289)
                      ++.|++|.++++|+++|++|+.
T Consensus        81 s~~~a~a~a~~~i~~~i~~~~~  102 (164)
T d1uxja2          81 SAYYAPAAATAQMVEAVLKDKK  102 (164)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCC
T ss_pred             cccchHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999863

>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=99.78  E-value=1.7e-19  Score=150.53  Aligned_cols=93  Identities=17%  Similarity=0.287  Sum_probs=84.0

Q ss_pred             eeccHHHHHHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCC-------------CCChhhHHHHHHHHHhhhHH
Q 022947          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-------------SLTPTEIDYLTDRIQNGGTE  258 (289)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~-------------~~~~~~~~~i~~~v~~~g~~  258 (289)
                      |.||++||+++||+++|+++++|+++|||+||+ +|||+||++++++             .++...++++.++++++|++
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~g~~   79 (170)
T d1llda2           1 TNLDSARLRFLIAQQTGVNVKNVHAYIAGEHGD-SEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYK   79 (170)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEBSSST-TCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-CcccchhhcccCCCchhhhcccccccccchhhHHHHHHHHhhhhhH
Confidence            679999999999999999999999999999998 9999999998853             13445678999999999999


Q ss_pred             HhhhcCCCCcchHHHHHHHHHHHHHHhcCC
Q 022947          259 VVEAKTGAGSATLSMCRHMLLPSLPMLVSE  288 (289)
Q Consensus       259 i~~~k~g~g~t~~s~A~a~~~~~~ail~~~  288 (289)
                      |++.|   |+++|++|.+++++++++++|+
T Consensus        80 i~~~k---g~t~~~~a~~~~~~~~~i~~~~  106 (170)
T d1llda2          80 IINGK---GATNYAIGMSGVDIIEAVLHDT  106 (170)
T ss_dssp             HHTSC---CSCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHhhh---ccchhhhHHHHHHHHHHHHcCC
Confidence            99954   7899999999999999999986

>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.78  E-value=1.7e-19  Score=151.18  Aligned_cols=96  Identities=26%  Similarity=0.447  Sum_probs=85.0

Q ss_pred             eeccHHHHHHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCC----------CCChhhHHHHHHHHHhhhHHHhh
Q 022947          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----------SLTPTEIDYLTDRIQNGGTEVVE  261 (289)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~----------~~~~~~~~~i~~~v~~~g~~i~~  261 (289)
                      |.||++||+++||++||++|++|+++||||||+ ++||+||++++.+          .....++.++...++.+|.+++.
T Consensus         2 c~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-t~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   80 (174)
T d1pzga2           2 CMLDSGRFRRYVADALSVSPRDVQATVIGTHGD-CMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVR   80 (174)
T ss_dssp             HHHHHHHHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhCcCHHHcEEEEEccCCC-ccccceeeeeECCEechhhccccchhhhhhhhhhheeeccceeEee
Confidence            789999999999999999999999999999998 9999999999864          13444567788888888988888


Q ss_pred             hcCCCCcchHHHHHHHHHHHHHHhcCCC
Q 022947          262 AKTGAGSATLSMCRHMLLPSLPMLVSEA  289 (289)
Q Consensus       262 ~k~g~g~t~~s~A~a~~~~~~ail~~~~  289 (289)
                      .+ ++|++.|++|.++++++++|++|+.
T Consensus        81 ~~-~~gst~~~~a~a~~~~~~~i~~~~~  107 (174)
T d1pzga2          81 FL-GQGSAYYAPAASAVAMATSFLNDEK  107 (174)
T ss_dssp             HH-SSSCCCHHHHHHHHHHHHHHHTTCC
T ss_pred             ee-cccchhhhhHHHHHHHHHhhcccCC
Confidence            76 6899999999999999999999863

>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.78  E-value=9.6e-20  Score=149.76  Aligned_cols=88  Identities=13%  Similarity=0.166  Sum_probs=77.5

Q ss_pred             eeccHHHHHHHHHHHcCCCCcce-eeeEEcccCCCeeeeecccccCCCCCChhhHHHHHHHHHhhhHHHhhhcCCCCcch
Q 022947          192 TMLDVVRANTFVAEVLGLDPREV-DVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT  270 (289)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~V-~~~V~G~hg~~~~vp~~S~~~v~~~~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~  270 (289)
                      |.|||+|||++|++.+   +.++ ++||+||||+ +|||+||.+++.+.   .++++|.++++++|++|+++|   |+|+
T Consensus         2 t~LDsaR~r~~l~~~~---~~~v~~a~ViGeHGd-s~vp~~S~~~i~g~---~~~~~i~~~v~~~g~eIi~~k---G~t~   71 (152)
T d1ojua2           2 NQLDSQRLKERLYNAG---ARNIRRAWIIGEHGD-SMFVAKSLADFDGE---VDWEAVENDVRFVAAEVIKRK---GATI   71 (152)
T ss_dssp             HHHHHHHHHHHHHHTT---CBSCCCCCEEBCSST-TCEECGGGCCCBSC---CCHHHHHHHHHTTHHHHHHHH---SSCC
T ss_pred             CccHHHHHHHHHHccC---CCCcceeEEEecCCC-ccccccccccccCc---cchhHhHHHHHHHHHHhhhhc---ccee
Confidence            5799999999998765   4455 8999999998 99999999998653   357799999999999999976   7899


Q ss_pred             HHHHHHHHHHHHHHhcCCC
Q 022947          271 LSMCRHMLLPSLPMLVSEA  289 (289)
Q Consensus       271 ~s~A~a~~~~~~ail~~~~  289 (289)
                      ||+|.++++|+++|++|+.
T Consensus        72 ~gia~a~~~iv~aIl~d~~   90 (152)
T d1ojua2          72 FGPAVAIYRMVKAVVEDTG   90 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTCC
T ss_pred             ccHHHHHHHHHHHHHhcCC
Confidence            9999999999999999974

>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=5e-19  Score=147.11  Aligned_cols=96  Identities=60%  Similarity=0.842  Sum_probs=87.1

Q ss_pred             eeeccHHHHHHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCCCCChhhHHHHHHHHHhhhHHHhhhcCCCCcch
Q 022947          191 VTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT  270 (289)
Q Consensus       191 ~t~lds~R~~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~  270 (289)
                      +|.||++||+++||+++|++|++|+++|+||||+++++|++|++.. ..+++.+++++.++++++|++|++.|.|+++++
T Consensus         1 ~T~LDs~R~~~~iA~~l~v~~~~V~~~ViGghg~~~~~p~~s~~~~-~~~~~~~~~~l~~~v~~~g~~ii~~~~~~~~~~   79 (167)
T d2cmda2           1 VTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPG-VSFTEQEVADLTKRIQNAGTEVVEAKAGGGSAT   79 (167)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCGGGCCCCEEECSSTTTEEECGGGCTT-CCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCC
T ss_pred             CcccHHHHHHHHHHHHHCcCHHHeEEEEEEcCCCceEeeecccccC-CCCcHHHHHHHHHHHHhhhhhhhhhhccCcchH
Confidence            3789999999999999999999999999999999788887776654 457788899999999999999999988889999


Q ss_pred             HHHHHHHHHHHHHHhcC
Q 022947          271 LSMCRHMLLPSLPMLVS  287 (289)
Q Consensus       271 ~s~A~a~~~~~~ail~~  287 (289)
                      +|+|.++++++++|++|
T Consensus        80 ~~~a~a~~~~~~~i~~~   96 (167)
T d2cmda2          80 LSMGQAAARFGLSLVRA   96 (167)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcc
Confidence            99999999999999865

>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=99.76  E-value=5.3e-19  Score=150.25  Aligned_cols=94  Identities=20%  Similarity=0.173  Sum_probs=82.3

Q ss_pred             eeccHHHHHHHHHHHcCCCCcceee-eEEcccCCCeeeeecccccCCCC-----CChhh--HHHHHHHHHhhhHHHhhhc
Q 022947          192 TMLDVVRANTFVAEVLGLDPREVDV-PVVGGHAGVTILPLLSQVKPSCS-----LTPTE--IDYLTDRIQNGGTEVVEAK  263 (289)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~V~~-~V~G~hg~~~~vp~~S~~~v~~~-----~~~~~--~~~i~~~v~~~g~~i~~~k  263 (289)
                      |.||++||+++||+++|++|++|+. +||||||+ +|||+||++++.+.     +.++.  ++++.+.+++++++|++.|
T Consensus         1 T~LDs~R~r~~lA~~l~V~~~~V~~~iI~GeHGd-s~vp~~S~a~v~g~~l~~~~~~~~~~~~~~~~~v~~~~~~ii~~k   79 (188)
T d7mdha2           1 TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST-TQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW   79 (188)
T ss_dssp             CHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSST-TCEEECSSCEETTEEGGGTCCCHHHHHHHHHHHHHTHHHHHHHHT
T ss_pred             CccHHHHHHHHHHHHHCcCHHHeeEEEEEEcCCC-cEeeeeeccEeeccchhhcccchhhhHHHHHHHHhhhHHHHHHhh
Confidence            6799999999999999999999985 58899999 99999999998642     33333  4899999999999999987


Q ss_pred             CCCCcchHHHHHHHHHHHHHHhcCC
Q 022947          264 TGAGSATLSMCRHMLLPSLPMLVSE  288 (289)
Q Consensus       264 ~g~g~t~~s~A~a~~~~~~ail~~~  288 (289)
                      +  +++++|+|.|+++++++|++|+
T Consensus        80 g--~s~~~s~A~A~~~~~~ai~~~~  102 (188)
T d7mdha2          80 G--RSSAASTAVSIADAIKSLVTPT  102 (188)
T ss_dssp             S--SCCHHHHHHHHHHHHHHHHSCC
T ss_pred             c--ccchhhHHHHHHHHHHHHHcCC
Confidence            3  5678889999999999999876

>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=99.76  E-value=8e-19  Score=146.36  Aligned_cols=93  Identities=22%  Similarity=0.366  Sum_probs=85.4

Q ss_pred             eeccHHHHHHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCC----------CCChhhHHHHHHHHHhhhHHHhh
Q 022947          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----------SLTPTEIDYLTDRIQNGGTEVVE  261 (289)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~----------~~~~~~~~~i~~~v~~~g~~i~~  261 (289)
                      |.||++||+++||+++|++|.+|+++|||+||+ +|||+||++++.+          .++.++++++.++++.+++++++
T Consensus         1 T~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-t~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   79 (171)
T d1ez4a2           1 TSLDSSRLRVALGKQFNVDPRSVDAYIMGEHGD-SEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIIN   79 (171)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEESSSSS-SCEECGGGCEETTEEHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEccCCC-cccccccccccCCccceeecccccccchhhhhheeehhhhhHHHHH
Confidence            679999999999999999999999999999998 9999999999864          25666788999999999999999


Q ss_pred             hcCCCCcchHHHHHHHHHHHHHHhcCC
Q 022947          262 AKTGAGSATLSMCRHMLLPSLPMLVSE  288 (289)
Q Consensus       262 ~k~g~g~t~~s~A~a~~~~~~ail~~~  288 (289)
                      .|   ++++|++|.+++++++++++|+
T Consensus        80 ~k---~s~~~a~a~~~~~~~~~i~~~~  103 (171)
T d1ez4a2          80 LK---GATFYGIGTALMRISKAILRDE  103 (171)
T ss_dssp             HH---SCCCHHHHHHHHHHHHHHHTTC
T ss_pred             hh---hhHhHHHHHHHHHHHHHHhccC
Confidence            65   6899999999999999999986

>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=99.75  E-value=7.6e-19  Score=145.52  Aligned_cols=93  Identities=22%  Similarity=0.346  Sum_probs=82.6

Q ss_pred             eeccHHHHHHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCCC-----C--ChhhHHHHHHHHHhhhHHHhhhcC
Q 022947          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS-----L--TPTEIDYLTDRIQNGGTEVVEAKT  264 (289)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~-----~--~~~~~~~i~~~v~~~g~~i~~~k~  264 (289)
                      |.||++||+++||+++|++|++|+++|||+||+ ++||+||++++++.     +  .+.+++++.+++++++++|++.| 
T Consensus         2 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~v~g~~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k-   79 (163)
T d1hyha2           2 TLLDTARMQRAVGEAFDLDPRSVSGYNLGEHGN-SQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNGK-   79 (163)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGCBCCEEBCTTT-TCEECTTTCEETTEEGGGC-----CCHHHHHHHHHHHHHHHHHHH-
T ss_pred             CchHHHHHHHHHHHHhCcCHHHeEEEEEcCCCC-cCccceeccccCCchHHHHhccccchHHHHHHHHhhhHHHHHHHH-
Confidence            679999999999999999999999999999998 99999999998641     2  22346899999999999999976 


Q ss_pred             CCCcchHHHHHHHHHHHHHHhcCC
Q 022947          265 GAGSATLSMCRHMLLPSLPMLVSE  288 (289)
Q Consensus       265 g~g~t~~s~A~a~~~~~~ail~~~  288 (289)
                        |+++|++|.++.+++++++.|+
T Consensus        80 --g~~~~~~a~~~~~~~~~~~~~~  101 (163)
T d1hyha2          80 --GYTSYGVATSAIRIAKAVMADA  101 (163)
T ss_dssp             --SSCCHHHHHHHHHHHHHHHTTC
T ss_pred             --HhHHHhHHHHhhHHHHHhcCCc
Confidence              6799999999999999999886

>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=99.75  E-value=6.1e-19  Score=147.09  Aligned_cols=94  Identities=21%  Similarity=0.382  Sum_probs=82.5

Q ss_pred             eeccHHHHHHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCCC------------CChhhHHHHHHHHHhhhHHH
Q 022947          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS------------LTPTEIDYLTDRIQNGGTEV  259 (289)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~------------~~~~~~~~i~~~v~~~g~~i  259 (289)
                      |.||++||+++||+++|++|.+|+++|||+||+ +|||+||++++++.            +++++++++.+++++.++++
T Consensus         1 T~LDs~R~~~~la~~lgv~~~~V~~~ViG~Hg~-t~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (169)
T d1y6ja2           1 TVLDSIRFRYLLSEKLGVDVKNVHGYIIGEHGD-SQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATI   79 (169)
T ss_dssp             THHHHHHHHHHHHTTTTCCTTTEECCEEBCSSS-SCEECCTTCEETTBCSCCC-----------CCHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhCcCHHHceEEEEccCCC-CCccCeeecccCchhHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhh
Confidence            679999999999999999999999999999998 99999999998531            23445689999999999999


Q ss_pred             hhhcCCCCcchHHHHHHHHHHHHHHhcCCC
Q 022947          260 VEAKTGAGSATLSMCRHMLLPSLPMLVSEA  289 (289)
Q Consensus       260 ~~~k~g~g~t~~s~A~a~~~~~~ail~~~~  289 (289)
                      ++.|   ++++|++|.++++++++++.|+.
T Consensus        80 ~~~~---~s~~~a~a~~~~~~~~~i~~~~~  106 (169)
T d1y6ja2          80 IKNK---GATYYGIAVSINTIVETLLKNQN  106 (169)
T ss_dssp             HHHT---SCCCHHHHHHHHHHHHHHHHTCC
T ss_pred             hhhh---hhhhhHHHHHHHHHHHHhccCCC
Confidence            9964   78999999999999999999863

>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.75  E-value=8.8e-19  Score=147.59  Aligned_cols=94  Identities=21%  Similarity=0.245  Sum_probs=81.4

Q ss_pred             eeccHHHHHHHHHHHcCCCCcceeeeEE-cccCCCeeeeecccccCCCC-----------CChhhHHHHHHHHHhhhHHH
Q 022947          192 TMLDVVRANTFVAEVLGLDPREVDVPVV-GGHAGVTILPLLSQVKPSCS-----------LTPTEIDYLTDRIQNGGTEV  259 (289)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~V~~~V~-G~hg~~~~vp~~S~~~v~~~-----------~~~~~~~~i~~~v~~~g~~i  259 (289)
                      |.||++|||++||++||++|++|+++|+ |+||+ ++||+||++++++.           .+....+++.+++++++++|
T Consensus         1 T~LDs~R~r~~la~~l~V~~~~V~~~vI~GeHG~-s~vp~~S~a~v~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i   79 (179)
T d5mdha2           1 TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSS-TQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAV   79 (179)
T ss_dssp             CHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSST-TCEEECTTCEEECSSCEEEHHHHHCCHHHHHTHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHCcCHHHcEEEEEEEcCCC-cccccchhceecCcchhhhhhhccccchhhHHHHHHHHHhccHhh
Confidence            6799999999999999999999998655 99998 99999999998541           22234578999999999999


Q ss_pred             hhhcCCCCcchHHHHHHHHHHHHHHhcCC
Q 022947          260 VEAKTGAGSATLSMCRHMLLPSLPMLVSE  288 (289)
Q Consensus       260 ~~~k~g~g~t~~s~A~a~~~~~~ail~~~  288 (289)
                      ++.|  +++++|++|.|+++++++|++|.
T Consensus        80 ~~~~--~~ss~~~~a~a~~~~~~~i~~~~  106 (179)
T d5mdha2          80 IKAR--KLSSAMSAAKAICDHVRDIWFGT  106 (179)
T ss_dssp             HHHH--SSCCCHHHHHHHHHHHHHHHHCC
T ss_pred             hhcc--CcchHHHHHHHHHHHHHHHHhhc
Confidence            9987  36788999999999999999875

>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.74  E-value=2.2e-18  Score=143.77  Aligned_cols=93  Identities=23%  Similarity=0.387  Sum_probs=84.4

Q ss_pred             eeccHHHHHHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCC-----------CCChhhHHHHHHHHHhhhHHHh
Q 022947          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-----------SLTPTEIDYLTDRIQNGGTEVV  260 (289)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~-----------~~~~~~~~~i~~~v~~~g~~i~  260 (289)
                      |.||++||+++||+++|++|.+|+++|||+||+ +|||+||++++.+           .++...++++.+.++.+|++|+
T Consensus         2 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-t~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (172)
T d1a5za2           2 TVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGD-SEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEII   80 (172)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEecCCC-CcccchhhcccCCcchhhhhhccccccHHHhhhhHHHHhccceeEe
Confidence            679999999999999999999999999999998 9999999998853           2556667899999999999999


Q ss_pred             hhcCCCCcchHHHHHHHHHHHHHHhcCC
Q 022947          261 EAKTGAGSATLSMCRHMLLPSLPMLVSE  288 (289)
Q Consensus       261 ~~k~g~g~t~~s~A~a~~~~~~ail~~~  288 (289)
                      +.|   ++++|++|.++++++.+++.|+
T Consensus        81 ~~~---~~~~~~~a~a~~~~~~~~~~~~  105 (172)
T d1a5za2          81 ERK---GATHYAIALAVADIVESIFFDE  105 (172)
T ss_dssp             HHH---SCCCHHHHHHHHHHHHHHHTTC
T ss_pred             ecc---ccchhhHHHHHHHHHHHHHhhc
Confidence            965   6789999999999999999886

>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.72  E-value=7e-18  Score=138.71  Aligned_cols=95  Identities=21%  Similarity=0.324  Sum_probs=85.4

Q ss_pred             EEeeeccHHHHHHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCC---CCChhhHHHHHHHHHhhhHHHhhhcCC
Q 022947          189 LGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC---SLTPTEIDYLTDRIQNGGTEVVEAKTG  265 (289)
Q Consensus       189 iG~t~lds~R~~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~---~~~~~~~~~i~~~v~~~g~~i~~~k~g  265 (289)
                      || |.||++|++++||+++|++|++|+++|||+||+ +++|+||++++.+   .++.++++++.++++..++++++.|  
T Consensus         1 ~G-t~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~v~~~s~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--   76 (161)
T d1o6za2           1 FG-GRLDSARFRYVLSEEFDAPVQNVEGTILGEHGD-AQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIERK--   76 (161)
T ss_dssp             CC-HHHHHHHHHHHHHHHHTCCGGGEECCEEECSST-TEEECGGGCEETTBCCCCCHHHHHHHHHHHHHHHHHHHTTT--
T ss_pred             CC-chHHHHHHHHHHHHHHCcCHHHeEEEEEeCCCC-ceeeehhhhcccccccccchHHHHHHHHHhhhhHHHHHHhh--
Confidence            46 889999999999999999999999999999998 9999999998853   3566678899999999999998854  


Q ss_pred             CCcchHHHHHHHHHHHHHHhcCC
Q 022947          266 AGSATLSMCRHMLLPSLPMLVSE  288 (289)
Q Consensus       266 ~g~t~~s~A~a~~~~~~ail~~~  288 (289)
                       +++.+++|.++++++.+++.+.
T Consensus        77 -~~s~~~~a~a~~~~~~~~~~~~   98 (161)
T d1o6za2          77 -GATEWGPARGVAHMVEAILHDT   98 (161)
T ss_dssp             -SSCCHHHHHHHHHHHHHHHTTC
T ss_pred             -hhhhhHHHHhhHhhhHhhhhcc
Confidence             6789999999999999999875

>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.71  E-value=1.2e-17  Score=138.64  Aligned_cols=93  Identities=20%  Similarity=0.339  Sum_probs=83.7

Q ss_pred             eccHHHHHHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCC----------CCChhhHHHHHHHHHhhhHHHhhh
Q 022947          193 MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----------SLTPTEIDYLTDRIQNGGTEVVEA  262 (289)
Q Consensus       193 ~lds~R~~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~----------~~~~~~~~~i~~~v~~~g~~i~~~  262 (289)
                      .||++|++++||+++|++|++|+++|||+||+ +++|+||++++.+          ...+++++++.+.++++++++++.
T Consensus         2 ~LD~~R~~~~la~~lgv~~~~V~~~ViG~Hg~-~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~   80 (165)
T d1t2da2           2 VLDTSRLKYYISQKLNVCPRDVNAHIVGAHGN-KMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNL   80 (165)
T ss_dssp             HHHHHHHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-CcccceeecccCCcchhhhcccchhhhhhhhhhhhhhhhhhHHHhhh
Confidence            58999999999999999999999999999998 9999999998753          245567789999999999999996


Q ss_pred             cCCCCcchHHHHHHHHHHHHHHhcCCC
Q 022947          263 KTGAGSATLSMCRHMLLPSLPMLVSEA  289 (289)
Q Consensus       263 k~g~g~t~~s~A~a~~~~~~ail~~~~  289 (289)
                      |   ++++|++|.+++.+++++++|+.
T Consensus        81 ~---~~~~~a~a~a~~~~~~~i~~~~~  104 (165)
T d1t2da2          81 H---ASPYVAPAAAIIEMAESYLKDLK  104 (165)
T ss_dssp             T---SSCCHHHHHHHHHHHHHHHTTCC
T ss_pred             c---cceeechhHHHHHHHHHHhhccc
Confidence            5   68999999999999999999863

>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=99.71  E-value=6.1e-18  Score=140.96  Aligned_cols=94  Identities=19%  Similarity=0.209  Sum_probs=83.8

Q ss_pred             eeccHHHHHHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCCC------------CChhhHHHHHHHHHhhhHHH
Q 022947          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS------------LTPTEIDYLTDRIQNGGTEV  259 (289)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~------------~~~~~~~~i~~~v~~~g~~i  259 (289)
                      |.||++||+++||+++|+++++|+++|||+||+ +|||+||++++.+.            .+++.++++.+++++++.++
T Consensus         3 T~LDs~R~~~~lA~~lgv~~~~V~~~ViG~Hg~-~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   81 (172)
T d1i0za2           3 CNLDSARFRYLMAEKLGIHPSSCHGWILGEHGD-SSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYEV   81 (172)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGCBCCEEBCSST-TCEECGGGCEETTEEHHHHCTTTTSSSCSSCTHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHhCcCHHHceEEEEccCCC-cccccHhhceeCCeeHHHhhhhhccchhHHHHHHHHHHhccceEEe
Confidence            689999999999999999999999999999998 99999999998531            23345789999999999999


Q ss_pred             hhhcCCCCcchHHHHHHHHHHHHHHhcCCC
Q 022947          260 VEAKTGAGSATLSMCRHMLLPSLPMLVSEA  289 (289)
Q Consensus       260 ~~~k~g~g~t~~s~A~a~~~~~~ail~~~~  289 (289)
                      ++.|   +++++++|.+++++++++++|+.
T Consensus        82 ~~~~---~~s~~a~a~~~~~~~~~~~~~~~  108 (172)
T d1i0za2          82 IKLK---GYTNWAIGLSVADLIESMLKNLS  108 (172)
T ss_dssp             HHHH---SSCCHHHHHHHHHHHHHHHTTCC
T ss_pred             eecc---cccchHHHHHHHHHHHHHhcCCC
Confidence            9976   67889999999999999998863

>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.69  E-value=2.6e-18  Score=143.48  Aligned_cols=93  Identities=20%  Similarity=0.344  Sum_probs=81.8

Q ss_pred             eeccHHHHHHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCCC-----------CChhhHHHHHHHHHhhhHHHh
Q 022947          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS-----------LTPTEIDYLTDRIQNGGTEVV  260 (289)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~-----------~~~~~~~~i~~~v~~~g~~i~  260 (289)
                      |.||++||+++||+++|+++++|+++|||+||+ ++||+||++++.+.           ++...++++.++++.++++++
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~   79 (172)
T d1llca2           1 TSLDTARFRQSIAEMVNVDARSVHAYIMGEHGD-TEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEII   79 (172)
T ss_dssp             THHHHHHHHHHHHHHSCCCTTSCEEEEEBSSSS-SCEEEEEEEESTTCCSSSSSSCSCSSSSSSSSTTTTTTGGGTTTTS
T ss_pred             CchHHHHHHHHHHHHhCcCHHHeEEEEEcCCCC-cceeeeeccccCCccHHHHHhhhhccchhHHHHHHHhhcchHHHHH
Confidence            679999999999999999999999999999998 99999999988531           223345688889999999999


Q ss_pred             hhcCCCCcchHHHHHHHHHHHHHHhcCC
Q 022947          261 EAKTGAGSATLSMCRHMLLPSLPMLVSE  288 (289)
Q Consensus       261 ~~k~g~g~t~~s~A~a~~~~~~ail~~~  288 (289)
                      +.   +|+++|++|.++++++++++.|+
T Consensus        80 ~~---kg~~~~a~a~~~~~~~~~~~~~~  104 (172)
T d1llca2          80 KL---KGATFYGIATALARISKAILNDE  104 (172)
T ss_dssp             SS---SSCTTHHHHHHHHHHHHHHHHTC
T ss_pred             Hh---hhhhhhhhHHHHHHHHHHHhcCC
Confidence            85   57899999999999999999886

>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.68  E-value=3.2e-17  Score=135.82  Aligned_cols=93  Identities=20%  Similarity=0.365  Sum_probs=81.0

Q ss_pred             eeccHHHHHHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCCC-----------CChhhHHHHHHHHHhhhHHHh
Q 022947          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS-----------LTPTEIDYLTDRIQNGGTEVV  260 (289)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~-----------~~~~~~~~i~~~v~~~g~~i~  260 (289)
                      |.||++||+++||++||+++++|+++|||+||+ ++||+||++++++.           .....++++.+.++..+++++
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~   79 (168)
T d1ldna2           1 TILDTARFRFLLGEYFSVAPQNVHAYIIGEHGD-TELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQII   79 (168)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGEEEEEEBCSST-TCEEEEEEEEETTEESTTTSGGGTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhCcCHHHeEEEEEcCCCC-ccccchhhcccCCcchhhhhhhhhhhhccchhhhhhhhhhhHHHHH
Confidence            679999999999999999999999999999998 99999999998531           112235688899999999998


Q ss_pred             hhcCCCCcchHHHHHHHHHHHHHHhcCC
Q 022947          261 EAKTGAGSATLSMCRHMLLPSLPMLVSE  288 (289)
Q Consensus       261 ~~k~g~g~t~~s~A~a~~~~~~ail~~~  288 (289)
                      +.|   +++.++++.++.+++++++.|.
T Consensus        80 ~~~---~~s~~~~a~~~~~~~~~~~~~~  104 (168)
T d1ldna2          80 EKK---GATYYGIAMGLARVTRAILHNE  104 (168)
T ss_dssp             HHH---SCCCHHHHHHHHHHHHHHHTTC
T ss_pred             Hhh---ccccchHHHHHhhHHHhhhccc
Confidence            865   6789999999999999999876

>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.68  E-value=8.5e-18  Score=139.65  Aligned_cols=93  Identities=23%  Similarity=0.390  Sum_probs=77.0

Q ss_pred             eeccHHHHHHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCCC----C---ChhhHHHHHHHHHhhhHHHhhhcC
Q 022947          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS----L---TPTEIDYLTDRIQNGGTEVVEAKT  264 (289)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~----~---~~~~~~~i~~~v~~~g~~i~~~k~  264 (289)
                      |.||++||+++||++||+++++|+++|||+||+ ++||+||++++.+.    +   ....++++.++++++++.+++.| 
T Consensus         3 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k-   80 (168)
T d1hyea2           3 THLDSLRFKVAIAKFFGVHIDEVRTRIIGEHGD-SMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLK-   80 (168)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEECSST-TEEECGGGCEETTEEGGGCGGGGGCCHHHHHHHHHHHTTSCCC---
T ss_pred             chHHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-ccccchhheeECCEecccccccchhhhhhHHHHHhhhHHHHHHhc-
Confidence            689999999999999999999999999999998 99999999988642    1   12236789999999999998864 


Q ss_pred             CCCcchHHHHHHHHHHHHHHhcCC
Q 022947          265 GAGSATLSMCRHMLLPSLPMLVSE  288 (289)
Q Consensus       265 g~g~t~~s~A~a~~~~~~ail~~~  288 (289)
                        +++.+++|.+++.+++++++|.
T Consensus        81 --~~~~~~~a~~~~~~~~~~~~~~  102 (168)
T d1hyea2          81 --GGSEFGPAAAILNVVRCIVNNE  102 (168)
T ss_dssp             ------CCHHHHHHHHHHHHHTTC
T ss_pred             --cCccccchhhhhHHHHhhhccC
Confidence              6678999999999999999886

>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=1.3e-16  Score=132.54  Aligned_cols=93  Identities=22%  Similarity=0.312  Sum_probs=81.2

Q ss_pred             eeccHHHHHHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCCC------------CChhhHHHHHHHHHhhhHHH
Q 022947          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS------------LTPTEIDYLTDRIQNGGTEV  259 (289)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~------------~~~~~~~~i~~~v~~~g~~i  259 (289)
                      |.||++|++++||+++|++|++|+++|||+||+ +++|+||++++++.            ......+++.+.++..+.++
T Consensus         3 T~LD~~R~~~~vA~~l~v~~~~V~~~ViG~Hs~-~~ip~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   81 (172)
T d2ldxa2           3 CNLDSARFRYLIGEKLGVNPTSCHGWVLGEHGD-SSVPIWSGVNVAGVTLKSLNPAIGTDKNKQHWKNVHKQVVEGGYEV   81 (172)
T ss_dssp             THHHHHHHHHHHHHHHTCCTTSSCCCEEECSSS-CEEECGGGCBSSCSSSSBSTTTCSCSSSSSSCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCcCHHHcEEEEEcCCCC-ccccceecceecCcchhhHHHHhhhhhhhhhhhhhhhhhccceeeh
Confidence            679999999999999999999999999999998 89999999998531            11223568899999999999


Q ss_pred             hhhcCCCCcchHHHHHHHHHHHHHHhcCC
Q 022947          260 VEAKTGAGSATLSMCRHMLLPSLPMLVSE  288 (289)
Q Consensus       260 ~~~k~g~g~t~~s~A~a~~~~~~ail~~~  288 (289)
                      +..|   +++.+++|.++++++.+++.|+
T Consensus        82 ~~~k---~~s~~~~a~~~~~~~~~~~~~~  107 (172)
T d2ldxa2          82 LDMK---GYTSWAIGLSVTDLARSILKNL  107 (172)
T ss_dssp             HHHH---SSCCHHHHHHHHHHHHHHHTTC
T ss_pred             hhcc---cchhHHHHHHHhHHHHhhcCCC
Confidence            8865   6788999999999999999885

>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Dogfish (Squalus acanthias) [TaxId: 7797]

Probab=99.64  E-value=7.5e-17  Score=133.79  Aligned_cols=93  Identities=16%  Similarity=0.199  Sum_probs=80.1

Q ss_pred             eeccHHHHHHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCCC---------CChhhHHHHHHHHHhhhHHHhhh
Q 022947          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS---------LTPTEIDYLTDRIQNGGTEVVEA  262 (289)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~---------~~~~~~~~i~~~v~~~g~~i~~~  262 (289)
                      |.||++||+++||++|+++|++|+++||||||+ +++|+||++++.+.         .+..++.++.++++.++.++...
T Consensus         3 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~v~~~s~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (169)
T d1ldma2           3 CNLDSARFRYLMGERLGVHSCSCHGWVIGEHGD-SVPSVWSGMNVASIKLHPLDGTNKDKQDWKKLHKDVVDSAYEVIKL   81 (169)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGCBCCBCBCSST-TCCBCGGGCEETTEESHHHHSSTTTTTTTTHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHCcCHHHeEEEEEcCCCc-cchhhhhhcccCCcchHHhhcccchhhhcceeEEEecCceEEEecc
Confidence            679999999999999999999999999999998 89999999998531         22334457777888888888876


Q ss_pred             cCCCCcchHHHHHHHHHHHHHHhcCC
Q 022947          263 KTGAGSATLSMCRHMLLPSLPMLVSE  288 (289)
Q Consensus       263 k~g~g~t~~s~A~a~~~~~~ail~~~  288 (289)
                      |   +++.+++|.++++++++++.|+
T Consensus        82 ~---~s~~~a~a~~~~~~~~~~~~~~  104 (169)
T d1ldma2          82 K---GYTSWAIGLSVADLAETIMKNL  104 (169)
T ss_dssp             H---SSCCHHHHHHHHHHHHHHHTTC
T ss_pred             c---cchhhHHHHHHhhhhheecCCC
Confidence            5   6789999999999999999986

>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.62  E-value=4.2e-16  Score=129.92  Aligned_cols=94  Identities=19%  Similarity=0.218  Sum_probs=75.6

Q ss_pred             eeeccHHHHHHHHHHHcCCCCcceeee-EEcccCCCeeeeecccccCCCC----C-Chh-hHHHHHHHHHhhhHHHhhhc
Q 022947          191 VTMLDVVRANTFVAEVLGLDPREVDVP-VVGGHAGVTILPLLSQVKPSCS----L-TPT-EIDYLTDRIQNGGTEVVEAK  263 (289)
Q Consensus       191 ~t~lds~R~~~~lA~~l~v~~~~V~~~-V~G~hg~~~~vp~~S~~~v~~~----~-~~~-~~~~i~~~v~~~g~~i~~~k  263 (289)
                      +|.||++||+++||++|+++|++|+++ |||+||+ ++||+||++++.+.    + .+. ..+++.++....+..++..+
T Consensus         1 ~T~LDs~R~r~~lA~~l~v~~~~V~~~iI~GeHG~-s~vp~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (173)
T d1y7ta2           1 MTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSS-TMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQAR   79 (173)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSST-TCEEECSSCEETTEEGGGTSCHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHCcCHHHcEEEEEEEecCc-cEEeeeeeeeEcCccHHHhcccccccchhhhhhhhhHHHHHHHh
Confidence            478999999999999999999999986 6799999 99999999998641    2 222 23455556666666666654


Q ss_pred             CCCCcchHHHHHHHHHHHHHHhcC
Q 022947          264 TGAGSATLSMCRHMLLPSLPMLVS  287 (289)
Q Consensus       264 ~g~g~t~~s~A~a~~~~~~ail~~  287 (289)
                        +++++|++|.++++++++++.+
T Consensus        80 --~~~s~~~~a~a~~~~~~~~~~~  101 (173)
T d1y7ta2          80 --GASSAASAANAAIEHIRDWALG  101 (173)
T ss_dssp             --SSCCHHHHHHHHHHHHHHHHTB
T ss_pred             --ccCchhhHHHHHHHHHHHHhcc
Confidence              4678899999999999998874

>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Aquaspirillum arcticum [TaxId: 87645]

Probab=99.52  E-value=1.5e-14  Score=120.05  Aligned_cols=94  Identities=18%  Similarity=0.152  Sum_probs=74.2

Q ss_pred             eccHHHHHHHHHHHcCCCCcceee-eEEcccCCCeeeeecccccCCCC-----CC--hhhHHHHHHHHHhhhHHHhhhcC
Q 022947          193 MLDVVRANTFVAEVLGLDPREVDV-PVVGGHAGVTILPLLSQVKPSCS-----LT--PTEIDYLTDRIQNGGTEVVEAKT  264 (289)
Q Consensus       193 ~lds~R~~~~lA~~l~v~~~~V~~-~V~G~hg~~~~vp~~S~~~v~~~-----~~--~~~~~~i~~~v~~~g~~i~~~k~  264 (289)
                      .||++||+++||++||++|++|++ +|||+||+ ++||+||++++.+.     ..  ....+++.+.+++++..+.+.+ 
T Consensus         2 ~LD~~R~r~~lA~kl~v~~~~V~~~iI~GehG~-s~vp~~S~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   79 (171)
T d1b8pa2           2 RLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSP-TMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDAR-   79 (171)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEESCEEEBCSST-TCEEECSSCEETTEEHHHHHCCHHHHHHTHHHHHHTHHHHHHHHH-
T ss_pred             cchHHHHHHHHHHHHCcCHHHeEEEEEEEcCCC-cEEeeeecceeecccchhhhhhhcchhhhHHHHHHHHHHHHHHHH-
Confidence            589999999999999999999986 67799998 99999999998642     11  1123577777888888888877 


Q ss_pred             CCCcchHHHHHHHHHHHHHHhcCC
Q 022947          265 GAGSATLSMCRHMLLPSLPMLVSE  288 (289)
Q Consensus       265 g~g~t~~s~A~a~~~~~~ail~~~  288 (289)
                      +++++.++.+.++..+.+++..|+
T Consensus        80 ~~~~~~~~~~a~~~~~~~~i~~~~  103 (171)
T d1b8pa2          80 GVSSAASAANAAIDHIHDWVLGTA  103 (171)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHCCT
T ss_pred             hhhhhhhhhHHHHHHHHHHHhCCC
Confidence            556666677777777778777664

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=5.9e-10  Score=93.74  Aligned_cols=120  Identities=15%  Similarity=0.198  Sum_probs=84.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-c--hhH--Hh----hhhcccC--------------CceEEE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGV--TA----DISHMDT--------------NAVVRG  101 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~--~g~--~~----DL~~~~~--------------~~~v~~  101 (289)
                      ..+||+|||| |.+|+.+|..++..|+  +|+++|+++ .  .+.  ..    .+.....              ..++..
T Consensus         3 ~IkkvaViGa-G~mG~~iA~~~a~~G~--~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~   79 (192)
T d1f0ya2           3 IVKHVTVIGG-GLMGAGIAQVAAATGH--TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT   79 (192)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE
T ss_pred             eeEEEEEECc-CHHHHHHHHHHHhCCC--cEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccc
Confidence            3469999998 9999999999999999  999999987 1  111  00    0100000              113333


Q ss_pred             EecCCCHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHh
Q 022947          102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKV  180 (289)
Q Consensus       102 ~~~t~d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~  180 (289)
                         ++|+.+++++||+|+.++              .+|.++.+++...+++++ |++++  +||.+..-..   +. ...
T Consensus        80 ---~~d~~~a~~~ad~ViEav--------------~E~l~~K~~v~~~l~~~~~~~~il--asnTS~l~i~---~l-a~~  136 (192)
T d1f0ya2          80 ---STDAASVVHSTDLVVEAI--------------VENLKVKNELFKRLDKFAAEHTIF--ASNTSSLQIT---SI-ANA  136 (192)
T ss_dssp             ---ESCHHHHTTSCSEEEECC--------------CSCHHHHHHHHHHHTTTSCTTCEE--EECCSSSCHH---HH-HTT
T ss_pred             ---cchhHhhhcccceehhhc--------------ccchhHHHHHHHHHhhhcccCcee--eccCcccccc---hh-hhh
Confidence               457888999999999985              357899999999999998 56655  7888765431   22 223


Q ss_pred             CCCCCCcEEEe
Q 022947          181 GTYDPKRLLGV  191 (289)
Q Consensus       181 ~~~~~~kviG~  191 (289)
                      . -.|+|++|+
T Consensus       137 ~-~~p~r~ig~  146 (192)
T d1f0ya2         137 T-TRQDRFAGL  146 (192)
T ss_dssp             S-SCGGGEEEE
T ss_pred             c-cCHhHEEee
Confidence            3 457888887

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=98.95  E-value=6.3e-10  Score=93.04  Aligned_cols=120  Identities=18%  Similarity=0.214  Sum_probs=82.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-c--hh--HHh----hhhccc---------CCceEEEEecCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PG--VTA----DISHMD---------TNAVVRGFLGQQ  106 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~--~g--~~~----DL~~~~---------~~~~v~~~~~t~  106 (289)
                      +.+||+|||| |.+|+.+|..++..|+  +|+++|+++ .  .+  ...    ++....         ...++..   ++
T Consensus         3 ~I~~vaViGa-G~mG~~iA~~~a~~G~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~---~~   76 (186)
T d1wdka3           3 DVKQAAVLGA-GIMGGGIAYQSASKGT--PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP---TL   76 (186)
T ss_dssp             CCSSEEEECC-HHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE---ES
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeec---cc
Confidence            3568999998 9999999999999998  999999987 1  11  111    111100         0123443   33


Q ss_pred             CHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCC
Q 022947          107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (289)
Q Consensus       107 d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~  185 (289)
                      ++ +++.+||+||.++              .+|.++.+++.++|.+++ |++++  +||.......   +. .... -.|
T Consensus        77 ~~-~~~~~adlViEav--------------~E~l~~K~~lf~~l~~~~~~~~Ii--aSnTS~l~i~---~l-a~~~-~~p  134 (186)
T d1wdka3          77 SY-GDFGNVDLVVEAV--------------VENPKVKQAVLAEVENHVREDAIL--ASNTSTISIS---LL-AKAL-KRP  134 (186)
T ss_dssp             SS-TTGGGCSEEEECC--------------CSCHHHHHHHHHHHHTTSCTTCEE--EECCSSSCHH---HH-GGGC-SCG
T ss_pred             cc-ccccccceeeeee--------------cchHHHHHHHHHHHHhhcCCCeeE--EeccccccHH---HH-HHhc-cCc
Confidence            54 6799999999985              257899999999999999 56655  7888776542   22 2233 346


Q ss_pred             CcEEEee
Q 022947          186 KRLLGVT  192 (289)
Q Consensus       186 ~kviG~t  192 (289)
                      +|++|+-
T Consensus       135 ~r~~g~H  141 (186)
T d1wdka3         135 ENFVGMH  141 (186)
T ss_dssp             GGEEEEE
T ss_pred             hheEeec
Confidence            7888863

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.91  E-value=4.9e-09  Score=88.29  Aligned_cols=128  Identities=13%  Similarity=0.166  Sum_probs=78.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch------hH-------Hhhhhc-ccCCceEEEEecCCCHHhhh
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP------GV-------TADISH-MDTNAVVRGFLGQQQLEDAL  112 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~------g~-------~~DL~~-~~~~~~v~~~~~t~d~~eal  112 (289)
                      |||+|||+ |+||.++|..|+..|+  +|+.+|+++..      +.       ..++.. ......+..   ++|+.+++
T Consensus         1 MkI~ViGl-G~vGl~~a~~la~~g~--~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~---~~~~~~~i   74 (202)
T d1mv8a2           1 MRISIFGL-GYVGAVCAGCLSARGH--EVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSG---TTDFKKAV   74 (202)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---ESCHHHHH
T ss_pred             CEEEEECC-CHhHHHHHHHHHhCCC--cEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhccccccc---CCCHHHHH
Confidence            79999998 9999999999999998  99999998611      10       011111 111223333   45788999


Q ss_pred             CCCCEEEEcCCCCCCCC-CchhhHHHhhHHHHHHHHHHHHHhCCCcEEEE-ecCCCcccHHHHHHHHHHhCCC
Q 022947          113 TGMDIVIIPAGVPRKPG-MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL-ISNPVNSTVPIAAEVFKKVGTY  183 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g-~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv-~tNPvd~~t~~~~~~~~~~~~~  183 (289)
                      ++||++++|.++|.... ......+   ....+++.+.++...++.++++ .|-|....-.+....+.+.++.
T Consensus        75 ~~~d~i~i~VpTP~~~~~~~d~~~~---~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~  144 (202)
T d1mv8a2          75 LDSDVSFICVGTPSKKNGDLDLGYI---ETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGK  144 (202)
T ss_dssp             HTCSEEEECCCCCBCTTSSBCCHHH---HHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSC
T ss_pred             hhCCEEEEecCccccccccccchhh---hhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccc
Confidence            99999999999886543 2212111   2334444444444456666555 4666666554443444443333

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=98.76  E-value=2.2e-08  Score=89.67  Aligned_cols=167  Identities=19%  Similarity=0.142  Sum_probs=98.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCceEEEEe-c---CCCHHhhhC--CCCEE
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-G---QQQLEDALT--GMDIV  118 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~~-~---t~d~~eal~--~aDiV  118 (289)
                      |||.||||+||+|+.++..|+..|+  +|+++|+..  .......+.+.. ..++..+. +   ...+.++++  ++|+|
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~l~~~~~~~~~d~V   77 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVIILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRNEALMTEILHDHAIDTV   77 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTTHHHHHHHHH-TSCCEEEECCTTCHHHHHHHHHHTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCCcchhhHHHHHhhc-CCCCEEEEeecCCHHHHHHHHhccCCCEE
Confidence            7999999999999999999999998  999999744  122212222211 11222211 1   123445566  78999


Q ss_pred             EEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC------CCcccHHHHHHHHHHhCCCCCCcEEE
Q 022947          119 IIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN------PVNSTVPIAAEVFKKVGTYDPKRLLG  190 (289)
Q Consensus       119 Iitag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN------Pvd~~t~~~~~~~~~~~~~~~~kviG  190 (289)
                      |++|+.+..+  -+...+.+..|+...+.+.+.++++....+|...|.      +.....       .......|....|
T Consensus        78 iHlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~Ss~~vy~~~~~~~~~-------e~~~~~~p~~~Y~  150 (338)
T d1udca_          78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDQPKIPYV-------ESFPTGTPQSPYG  150 (338)
T ss_dssp             EECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCSSSBC-------TTSCCCCCSSHHH
T ss_pred             EECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEecCcceEEccccccccc-------cccccCCCcchHH
Confidence            9999854211  012356788999999999999999876655554431      111110       0011223444555


Q ss_pred             eeeccHHHHHHHHHHH-cCCCCccee-eeEEcccC
Q 022947          191 VTMLDVVRANTFVAEV-LGLDPREVD-VPVVGGHA  223 (289)
Q Consensus       191 ~t~lds~R~~~~lA~~-l~v~~~~V~-~~V~G~hg  223 (289)
                      .+.+...++....++. .+.+..-++ ..|+|.+.
T Consensus       151 ~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~  185 (338)
T d1udca_         151 KSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHP  185 (338)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCEEEEEEECEEECCCT
T ss_pred             HHHhhhhHHHHHHHhhccCCeEEEEeeccEEeccC
Confidence            5555554444433333 455555566 55888764

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=2.2e-08  Score=88.94  Aligned_cols=168  Identities=13%  Similarity=0.082  Sum_probs=102.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~~  126 (289)
                      +||.|+||+|++|++++..|+..|+  +|+.+|.... +....+........+.... .+..+.++.++|+||++|+...
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~--~V~~~d~~~~-~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~d~VihlAa~~~   77 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGH--EVTVVDNFFT-GRKRNVEHWIGHENFELIN-HDVVEPLYIEVDQIYHLASPAS   77 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSS-CCGGGTGGGTTCTTEEEEE-CCTTSCCCCCCSEEEECCSCCS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCCc-CCHHHHHHhcCCCceEEEe-hHHHHHHHcCCCEEEECcccCC
Confidence            5999999999999999999999998  9999996431 0111111211122233221 1234456789999999987543


Q ss_pred             CC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC------CCc-ccHHHHHHHHHHhCCCCCCcEEEeeeccHH
Q 022947          127 KP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN------PVN-STVPIAAEVFKKVGTYDPKRLLGVTMLDVV  197 (289)
Q Consensus       127 ~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN------Pvd-~~t~~~~~~~~~~~~~~~~kviG~t~lds~  197 (289)
                      .+  ..+..+.+..|+.....+++.+++...  .++.+|.      |.. .+..   .......-+.|....|.+.+...
T Consensus        78 ~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~--k~I~~SS~~vy~~~~~~~~~e---~~~~~~~~~~p~~~Y~~sK~~~E  152 (312)
T d2b69a1          78 PPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--RLLLASTSEVYGDPEVHPQSE---DYWGHVNPIGPRACYDEGKRVAE  152 (312)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEEEGGGGBSCSSSSBCT---TCCCBCCSSSTTHHHHHHHHHHH
T ss_pred             chhHHhCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEEEChheecCCCCCCCCc---cccCCCCCCCCccHHHHHHHHHH
Confidence            11  123455678899999999999988764  3444321      100 0000   00000011234455666655555


Q ss_pred             HHHHHHHHHcCCCCccee-eeEEcccC
Q 022947          198 RANTFVAEVLGLDPREVD-VPVVGGHA  223 (289)
Q Consensus       198 R~~~~lA~~l~v~~~~V~-~~V~G~hg  223 (289)
                      .+....++..|++...++ ..|+|.+.
T Consensus       153 ~~~~~~~~~~~~~~~~lR~~~vyGp~~  179 (312)
T d2b69a1         153 TMCYAYMKQEGVEVRVARIFNTFGPRM  179 (312)
T ss_dssp             HHHHHHHHHHCCCEEEEEECCEECTTC
T ss_pred             HHHHHHHHHhCCcEEEEEeeeEECCCC
Confidence            666777788899988888 55999664

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.72  E-value=3.3e-08  Score=89.03  Aligned_cols=174  Identities=15%  Similarity=0.053  Sum_probs=105.2

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEE--ecCCCHHhhhCCCCEEEEc
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGF--LGQQQLEDALTGMDIVIIP  121 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~--~~t~d~~eal~~aDiVIit  121 (289)
                      ++.|||.|+||+||||++++..|+++|+  +|+.+|..+......++..    ......  ....++.+++++.|.||++
T Consensus        13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~----~~~~~~D~~~~~~~~~~~~~~d~Vih~   86 (363)
T d2c5aa1          13 SENLKISITGAGGFIASHIARRLKHEGH--YVIASDWKKNEHMTEDMFC----DEFHLVDLRVMENCLKVTEGVDHVFNL   86 (363)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCSSSCGGGTC----SEEEECCTTSHHHHHHHHTTCSEEEEC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEeCCCccchhhhccc----CcEEEeechhHHHHHHHhhcCCeEeec
Confidence            4578999999999999999999999998  9999997652211111111    111111  1112345667899999999


Q ss_pred             CCCCCCC---CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHH---HH---HHHHhCCCCCCcEEEee
Q 022947          122 AGVPRKP---GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIA---AE---VFKKVGTYDPKRLLGVT  192 (289)
Q Consensus       122 ag~~~~~---g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~---~~---~~~~~~~~~~~kviG~t  192 (289)
                      ++.....   ...-......|+.....++....+.+..-+| ..|.-...-..--   .+   .........|....|.+
T Consensus        87 a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk~~i-~~SS~~~~~~~~~~~~~~~~~~~~e~~~~~p~~~Yg~s  165 (363)
T d2c5aa1          87 AADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFF-YASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLE  165 (363)
T ss_dssp             CCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEE-EEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSHHHHH
T ss_pred             ccccccccccccccccccccccchhhHHHHhHHhhCccccc-cccccccccccccccccccccccccCCcCCCCCHHHHH
Confidence            8654321   1223445677899999999999887654344 3332111100000   00   00001112344556666


Q ss_pred             eccHHHHHHHHHHHcCCCCccee-eeEEcccCC
Q 022947          193 MLDVVRANTFVAEVLGLDPREVD-VPVVGGHAG  224 (289)
Q Consensus       193 ~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg~  224 (289)
                      .+...++-....+..|++..-++ ..|+|.++.
T Consensus       166 K~~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~  198 (363)
T d2c5aa1         166 KLATEELCKHYNKDFGIECRIGRFHNIYGPFGT  198 (363)
T ss_dssp             HHHHHHHHHHHHHHHCCEEEEEEECCEECTTSC
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEeeeEeccCCc
Confidence            56566666667788898888887 459998764

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=98.68  E-value=3.5e-08  Score=79.87  Aligned_cols=90  Identities=21%  Similarity=0.223  Sum_probs=62.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      |||+|||+ |.+|+++|..|...|+  +|+.+|+++. ...+.+..-.    . . .  .++. +++++||+||++.  |
T Consensus         1 MkI~iIG~-G~mG~~lA~~l~~~g~--~V~~~d~~~~~~~~a~~~~~~----~-~-~--~~~~-~~~~~~DiIilav--p   66 (165)
T d2f1ka2           1 MKIGVVGL-GLIGASLAGDLRRRGH--YLIGVSRQQSTCEKAVERQLV----D-E-A--GQDL-SLLQTAKIIFLCT--P   66 (165)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHTTSC----S-E-E--ESCG-GGGTTCSEEEECS--C
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHhhcc----c-e-e--eeec-ccccccccccccC--c
Confidence            79999998 9999999999999998  9999999762 1122221111    1 1 1  1243 7899999999974  2


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 022947          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (289)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tN  164 (289)
                                    ...+.++++.+..+- |+.+|+.+++
T Consensus        67 --------------~~~~~~vl~~l~~~l~~~~iv~~~~s   92 (165)
T d2f1ka2          67 --------------IQLILPTLEKLIPHLSPTAIVTDVAS   92 (165)
T ss_dssp             --------------HHHHHHHHHHHGGGSCTTCEEEECCS
T ss_pred             --------------Hhhhhhhhhhhhhhcccccceeeccc
Confidence                          234566777777764 6777766544

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.67  E-value=1e-07  Score=84.55  Aligned_cols=176  Identities=18%  Similarity=0.203  Sum_probs=110.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCC----ccEEEEEeCCCchhHHhhhhcccCCceEEEEecC----CCHHhhhCCCCEE
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPL----VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ----QQLEDALTGMDIV  118 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~----~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t----~d~~eal~~aDiV  118 (289)
                      |||.|+||+|+||++++..|+..|+    .+++..+|.....+....+........+..+...    ........+.|+|
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~v   80 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAI   80 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhHhhhhhcCCCeEEEEeccccchhhhccccccceE
Confidence            7999999999999999999988774    4678888876522222222222222334332211    1334567999999


Q ss_pred             EEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC------cccHHHHHHHHHHhCCCCCCcEEE
Q 022947          119 IIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV------NSTVPIAAEVFKKVGTYDPKRLLG  190 (289)
Q Consensus       119 Iitag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPv------d~~t~~~~~~~~~~~~~~~~kviG  190 (289)
                      +++|+.+...  .....+.+..|+.....+++.+.++...-+|...|.-+      ..+.        +...+.|...+|
T Consensus        81 i~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~I~~Ss~~~yg~~~~~~~~--------E~~~~~p~~~Y~  152 (322)
T d1r6da_          81 VHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWT--------ESSPLEPNSPYA  152 (322)
T ss_dssp             EECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSSCBC--------TTSCCCCCSHHH
T ss_pred             EeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCceEEEeecceeecCCCCCCCC--------CCCCCCCCCHHH
Confidence            9998765322  12234567889999999999999887654444333211      0111        112244555566


Q ss_pred             eeeccHHHHHHHHHHHcCCCCccee-eeEEcccCC-Ceeeee
Q 022947          191 VTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAG-VTILPL  230 (289)
Q Consensus       191 ~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg~-~~~vp~  230 (289)
                      .+.+....+...+++..+++...++ ..|+|.+.. +.++|.
T Consensus       153 ~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~i~~  194 (322)
T d1r6da_         153 ASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPEKLIPL  194 (322)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTTSHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCEEEEEeeeEECcCCCcCcHHHH
Confidence            6655555666777888899999998 559996543 234444

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=4.8e-08  Score=81.58  Aligned_cols=105  Identities=15%  Similarity=0.125  Sum_probs=68.8

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEE--EecCCCHHhhhCCCCEEEEc
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG--FLGQQQLEDALTGMDIVIIP  121 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~--~~~t~d~~eal~~aDiVIit  121 (289)
                      +.++||+|+||+|++|++++..|+.+|+  +|.+++++..+.  .+....  ...+..  ....+++.++++++|+||.+
T Consensus         1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~--~V~~~~R~~~~~--~~~~~~--~~~~~~gD~~d~~~l~~al~~~d~vi~~   74 (205)
T d1hdoa_           1 MAVKKIAIFGATGQTGLTTLAQAVQAGY--EVTVLVRDSSRL--PSEGPR--PAHVVVGDVLQAADVDKTVAGQDAVIVL   74 (205)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCGGGS--CSSSCC--CSEEEESCTTSHHHHHHHHTTCSEEEEC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEEcChhhc--cccccc--ccccccccccchhhHHHHhcCCCEEEEE
Confidence            3567999999999999999999999998  999999875211  111111  111111  11123567889999999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEE
Q 022947          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV  159 (289)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiv  159 (289)
                      +|........     ..+....+.+++.+++..-+-++
T Consensus        75 ~g~~~~~~~~-----~~~~~~~~~l~~aa~~~~v~r~i  107 (205)
T d1hdoa_          75 LGTRNDLSPT-----TVMSEGARNIVAAMKAHGVDKVV  107 (205)
T ss_dssp             CCCTTCCSCC-----CHHHHHHHHHHHHHHHHTCCEEE
T ss_pred             eccCCchhhh-----hhhHHHHHHHHHHHHhcCCCeEE
Confidence            8864322221     23456677888888887644333

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.66  E-value=2.1e-08  Score=81.86  Aligned_cols=100  Identities=16%  Similarity=0.154  Sum_probs=65.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch-hHHhhhhcc---cCCceEE--EEecCCCHHhhhCCCCEEEE
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHM---DTNAVVR--GFLGQQQLEDALTGMDIVII  120 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~-g~~~DL~~~---~~~~~v~--~~~~t~d~~eal~~aDiVIi  120 (289)
                      +||+|||+ |.+|+.+|..|++.|+  +|.++|+++.. ....+....   .......  ....+++.+|+++++|+||+
T Consensus         2 k~iaIiGa-G~~G~~~A~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii   78 (184)
T d1bg6a2           2 KTYAVLGL-GNGGHAFAAYLALKGQ--SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILI   78 (184)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEE
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEE
Confidence            59999999 9999999999999998  99999997621 111111100   0001111  01113577899999999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 022947          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNP  165 (289)
Q Consensus       121 tag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNP  165 (289)
                      +...                ....+++++++.+- ++.+|+...|.
T Consensus        79 ~v~~----------------~~~~~~~~~i~~~l~~~~~iv~~~g~  108 (184)
T d1bg6a2          79 VVPA----------------IHHASIAANIASYISEGQLIILNPGA  108 (184)
T ss_dssp             CSCG----------------GGHHHHHHHHGGGCCTTCEEEESSCC
T ss_pred             EEch----------------hHHHHHHHHhhhccCCCCEEEEeCCC
Confidence            8521                12456778888875 67776655444

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=98.56  E-value=1.7e-07  Score=84.67  Aligned_cols=166  Identities=14%  Similarity=0.025  Sum_probs=100.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc---hhHHhhhhcc--cCCceEEEEec----CCCHHhhhCCC--C
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHM--DTNAVVRGFLG----QQQLEDALTGM--D  116 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~---~g~~~DL~~~--~~~~~v~~~~~----t~d~~eal~~a--D  116 (289)
                      +|.|+||+|+||++++..|++.|+  +|+.+|+...   ......+.+.  ....++..+.+    ..++++.+++.  |
T Consensus         3 ~vLITGatGfiGs~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d   80 (357)
T d1db3a_           3 VALITGVTGQDGSYLAEFLLEKGY--EVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD   80 (357)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCC
Confidence            556999999999999999999998  9999998541   1111111111  11234443321    12344556655  9


Q ss_pred             EEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhC--CCcEEEEec------CCCcc-cHHHHHHHHHHhCCCCC
Q 022947          117 IVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCC--PKAIVNLIS------NPVNS-TVPIAAEVFKKVGTYDP  185 (289)
Q Consensus       117 iVIitag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~--p~aiviv~t------NPvd~-~t~~~~~~~~~~~~~~~  185 (289)
                      +|+++|+.....  ..+....+..|+.....+++.+++++  +...++.+|      +|-+. ++        +...+.|
T Consensus        81 ~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~~~~--------E~~~~~P  152 (357)
T d1db3a_          81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQK--------ETTPFYP  152 (357)
T ss_dssp             EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBC--------TTSCCCC
T ss_pred             EEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCCCCCcC--------CCCCCCC
Confidence            999999875322  23345567889999999999999876  334455544      22221 11        1122445


Q ss_pred             CcEEEeeeccHHHHHHHHHHHcCCCCccee-eeEEcccC
Q 022947          186 KRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (289)
Q Consensus       186 ~kviG~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg  223 (289)
                      ...+|.+.+...++-...++..+++..-++ ..|+|...
T Consensus       153 ~~~Y~~sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~  191 (357)
T d1db3a_         153 RSPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRR  191 (357)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTS
T ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCC
Confidence            556666666666666667778888887777 44888653

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=98.55  E-value=9.7e-08  Score=84.06  Aligned_cols=114  Identities=19%  Similarity=0.209  Sum_probs=75.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEec----CCCHHhhhCCC--CEEEEc
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG----QQQLEDALTGM--DIVIIP  121 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~----t~d~~eal~~a--DiVIit  121 (289)
                      ||.|+||+|+||++++..|+.+|+  +|+.+|.-...+....+.......++..+.+    ..++.++++++  |+||++
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~--~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~   79 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGI--DLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHL   79 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEee
Confidence            899999999999999999999998  9999985432211111111111123333221    12355666654  999999


Q ss_pred             CCCCCCCC--CchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          122 AGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       122 ag~~~~~g--~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      |+......  .+..+....|+...+.+++...+....-.++..|
T Consensus        80 aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS  123 (338)
T d1orra_          80 AGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSS  123 (338)
T ss_dssp             CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             cccccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccc
Confidence            87643221  1235667889999999999999988666665554

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=98.55  E-value=2.1e-07  Score=83.29  Aligned_cols=178  Identities=15%  Similarity=0.082  Sum_probs=103.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEec----CCCHHhhhCCCCEEEE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG----QQQLEDALTGMDIVII  120 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~----t~d~~eal~~aDiVIi  120 (289)
                      ++|||.|+||+|+||++++..|+..|+-..++.+|.....+....+.... ...+..+.+    ...+.+++++.|.|++
T Consensus         1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~~~~~~~~~-~~~i~~~~~Di~d~~~~~~~~~~~~~v~~   79 (346)
T d1oc2a_           1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAIL-GDRVELVVGDIADAELVDKLAAKADAIVH   79 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGC-SSSEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccccHHHHHHhh-cCCeEEEEccCCCHHHHHHHHhhhhhhhh
Confidence            47899999999999999999998888644677777533111111111111 223333221    1345677899999999


Q ss_pred             cCCCCCCCC--CchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCccc-H----HHH----HHHHHHhCCCCCCcEE
Q 022947          121 PAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNST-V----PIA----AEVFKKVGTYDPKRLL  189 (289)
Q Consensus       121 tag~~~~~g--~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~-t----~~~----~~~~~~~~~~~~~kvi  189 (289)
                      .|+......  .+..+.+..|+.....+++...+....-+++..+.--... .    +.-    .+.....+...|....
T Consensus        80 ~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~k~i~~ss~~vyg~~~~~~~~~~~~~~~~~~~~e~~~~~p~s~Y  159 (346)
T d1oc2a_          80 YAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPY  159 (346)
T ss_dssp             CCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCCCCCSHH
T ss_pred             hhhcccccchhhCcccceeeehHhHHhhhhhhccccccccccccceEecccCccccccccccCcccccccCCCCCCCCHH
Confidence            987553221  1234567889999999999998887543332212110000 0    000    0000001123334456


Q ss_pred             EeeeccHHHHHHHHHHHcCCCCccee-eeEEcccC
Q 022947          190 GVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (289)
Q Consensus       190 G~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg  223 (289)
                      |.+.+...++-....+..+++..-++ ..|+|.+.
T Consensus       160 ~~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~  194 (346)
T d1oc2a_         160 SSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQ  194 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTC
T ss_pred             HHHHHHHHHHHHHHHHHcCCCEEEEeecceeCCCC
Confidence            66666666666666778888888787 44889654

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=7.8e-08  Score=81.87  Aligned_cols=116  Identities=19%  Similarity=0.131  Sum_probs=76.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      +.+||.|+||+|++|++++..|+.++...+|.++++++............  ..+..+....++.++++++|+||+++|.
T Consensus        13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~--~~~~D~~~~~~~~~~~~~~d~vi~~~~~   90 (232)
T d2bkaa1          13 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVN--QEVVDFEKLDDYASAFQGHDVGFCCLGT   90 (232)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCE--EEECCGGGGGGGGGGGSSCSEEEECCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceee--eeeecccccccccccccccccccccccc
Confidence            35689999999999999999998888767999999876210000000000  0000111123567889999999999875


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      .. ......++...|.....++++...+...+-++.+.|
T Consensus        91 ~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~~Ss  128 (232)
T d2bkaa1          91 TR-GKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSS  128 (232)
T ss_dssp             CH-HHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             cc-cccchhhhhhhcccccceeeecccccCccccccCCc
Confidence            42 122345566778889999999888776565554433

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.53  E-value=1.2e-07  Score=78.18  Aligned_cols=97  Identities=22%  Similarity=0.263  Sum_probs=65.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhccc----C---CceEEEEecCCCHHhhhCCCCEEE
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----T---NAVVRGFLGQQQLEDALTGMDIVI  119 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~----~---~~~v~~~~~t~d~~eal~~aDiVI  119 (289)
                      |||+|||+ |..|+++|..|+..++  +|.++.+......+..+....    .   ..... +..++|++++++++|+||
T Consensus         1 MkI~ViGa-G~~GtalA~~la~~g~--~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~ad~Ii   76 (180)
T d1txga2           1 MIVSILGA-GAMGSALSVPLVDNGN--EVRIWGTEFDTEILKSISAGREHPRLGVKLNGVE-IFWPEQLEKCLENAEVVL   76 (180)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCC--EEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEE-EECGGGHHHHHTTCSEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--EEEEEEecccHHHHHHHhhhhhhhhhcchhcccc-ccccccHHHHHhccchhh
Confidence            79999998 9999999999999987  999997643222222222111    0   11112 223678889999999999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       120 itag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      ++..                ...++++++++..+-++..+++++
T Consensus        77 ~avp----------------s~~~~~~~~~l~~~l~~~~ii~~t  104 (180)
T d1txga2          77 LGVS----------------TDGVLPVMSRILPYLKDQYIVLIS  104 (180)
T ss_dssp             ECSC----------------GGGHHHHHHHHTTTCCSCEEEECC
T ss_pred             cccc----------------hhhhHHHHHhhccccccceecccc
Confidence            9752                233667777888777665655544

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.51  E-value=1e-07  Score=76.39  Aligned_cols=102  Identities=18%  Similarity=0.227  Sum_probs=68.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~~  126 (289)
                      |||+|||+ |.+|+.++..|++.|+  +|.++|+++..................... .++ .+++.++|+||++.... 
T Consensus         1 MkI~IiGa-G~iG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~D~iii~vka~-   74 (167)
T d1ks9a2           1 MKITVLGC-GALGQLWLTALCKQGH--EVQGWLRVPQPYCSVNLVETDGSIFNESLT-AND-PDFLATSDLLLVTLKAW-   74 (167)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSEEEEEEECTTSCEEEEEEE-ESC-HHHHHTCSEEEECSCGG-
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCC--ceEEEEcCHHHhhhhccccCCccccccccc-cch-hhhhcccceEEEeeccc-
Confidence            79999999 9999999999999998  999999987322211111111111111111 223 57889999999986321 


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCccc
Q 022947          127 KPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNST  169 (289)
Q Consensus       127 ~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~  169 (289)
                                     -+.+.++.+..+- ++..|+.+.|=++..
T Consensus        75 ---------------~~~~~~~~l~~~~~~~~~Iv~~qNG~~~~  103 (167)
T d1ks9a2          75 ---------------QVSDAVKSLASTLPVTTPILLIHNGMGTI  103 (167)
T ss_dssp             ---------------GHHHHHHHHHTTSCTTSCEEEECSSSCTT
T ss_pred             ---------------chHHHHHhhccccCcccEEeeccCcccHH
Confidence                           1445666666654 788898889977654

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=98.45  E-value=1.5e-07  Score=78.51  Aligned_cols=71  Identities=17%  Similarity=0.250  Sum_probs=52.3

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhh--cc--------cCCceEEEEecCCCHHhhhC
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADIS--HM--------DTNAVVRGFLGQQQLEDALT  113 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~--~~--------~~~~~v~~~~~t~d~~eal~  113 (289)
                      +.|+||+|||+ |..|+++|..|+..|+  +|.|+++++..  +.++.  +.        ....++..   ++|++++++
T Consensus         5 ~~m~KI~ViGa-G~wGtAlA~~La~~g~--~V~l~~r~~~~--~~~i~~~~~n~~yl~~~~l~~~i~~---t~~l~~a~~   76 (189)
T d1n1ea2           5 LYLNKAVVFGS-GAFGTALAMVLSKKCR--EVCVWHMNEEE--VRLVNEKRENVLFLKGVQLASNITF---TSDVEKAYN   76 (189)
T ss_dssp             CCEEEEEEECC-SHHHHHHHHHHHTTEE--EEEEECSCHHH--HHHHHHHTBCTTTSTTCBCCTTEEE---ESCHHHHHT
T ss_pred             ceeceEEEECC-CHHHHHHHHHHHHcCC--eEEEEEecHHH--HHHHhhccccccccccccccccccc---chhhhhccC
Confidence            34568999998 9999999999999987  99999987621  11121  11        11234543   468899999


Q ss_pred             CCCEEEEcC
Q 022947          114 GMDIVIIPA  122 (289)
Q Consensus       114 ~aDiVIita  122 (289)
                      ++|+||++.
T Consensus        77 ~ad~iiiav   85 (189)
T d1n1ea2          77 GAEIILFVI   85 (189)
T ss_dssp             TCSCEEECS
T ss_pred             CCCEEEEcC
Confidence            999999984

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=98.43  E-value=3.7e-07  Score=82.62  Aligned_cols=181  Identities=15%  Similarity=0.092  Sum_probs=103.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecC-CC---HHhhhC--CCCEEEE
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ-QQ---LEDALT--GMDIVII  120 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t-~d---~~eal~--~aDiVIi  120 (289)
                      |||.|+||+|++|++++..|+..|+ ..++++|.....+....+.+......+..+.+. .|   +.+.++  +.|+||+
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~-~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vih   79 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQ-DTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMH   79 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCS-CEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC-CEEEEEeCCCccccHHHHHhhhhcCCcEEEEccCCCHHHHHHHHHhCCCCEEEE
Confidence            7999999999999999999988886 247788865422222223332222344433211 22   233333  5899999


Q ss_pred             cCCCCCCCC--CchhhHHHhhHHHHHHHHHHHHHhCCC--------cEEEEecCCCccc-----HHHHHH------HHHH
Q 022947          121 PAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPK--------AIVNLISNPVNST-----VPIAAE------VFKK  179 (289)
Q Consensus       121 tag~~~~~g--~~r~d~~~~N~~i~~~i~~~i~~~~p~--------aiviv~tNPvd~~-----t~~~~~------~~~~  179 (289)
                      +|+....+.  .+-.+.+..|+.....+.+.+.++...        ..++.+|.-. +.     .+. .+      ....
T Consensus        80 lAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~-vyg~~~~~~~-~~~~~~~~~~~e  157 (361)
T d1kewa_          80 LAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDE-VYGDLPHPDE-VENSVTLPLFTE  157 (361)
T ss_dssp             CCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGG-GGCCCCCGGG-SCTTSCCCCBCT
T ss_pred             CccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccce-eeCCCccCCc-cccccCCCCccc
Confidence            987542110  112456788888888888887765322        2344443210 00     000 00      0000


Q ss_pred             hCCCCCCcEEEeeeccHHHHHHHHHHHcCCCCccee-eeEEcccCC-Ceeeee
Q 022947          180 VGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAG-VTILPL  230 (289)
Q Consensus       180 ~~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg~-~~~vp~  230 (289)
                      .....|..+.|.+.+...++....++..+++...++ ..|+|.++. ++++|.
T Consensus       158 ~~~~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~i~~  210 (361)
T d1kewa_         158 TTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPL  210 (361)
T ss_dssp             TSCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCCCcCcHHHH
Confidence            011334455666766677777777788899988888 459998754 234454

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.42  E-value=3.6e-07  Score=83.01  Aligned_cols=176  Identities=13%  Similarity=0.109  Sum_probs=100.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc---------------hh--HH-hhhhcccCCceEEEEecC--
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---------------PG--VT-ADISHMDTNAVVRGFLGQ--  105 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~---------------~g--~~-~DL~~~~~~~~v~~~~~t--  105 (289)
                      .|||.|+||+|++|++++..|++.|+  +|+.+|.-..               ..  .. ..+... ...++..+.+.  
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~--~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~Dl~   77 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNY--EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKAL-TGKSIELYVGDIC   77 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHH-HCCCCEEEESCTT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEecCCcccccccccccccccccchHHHHHHHHhh-cCCCcEEEEccCC
Confidence            37999999999999999999999998  9999994210               00  00 000000 01223322211  


Q ss_pred             --CCHHhhhCC--CCEEEEcCCCCCCC--CCc---hhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHH--H
Q 022947          106 --QQLEDALTG--MDIVIIPAGVPRKP--GMT---RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIA--A  174 (289)
Q Consensus       106 --~d~~eal~~--aDiVIitag~~~~~--g~~---r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~--~  174 (289)
                        ..+++++++  .|+|+++|+....+  -.+   ..+....|+.....+.+.+++++.+..++..|.-...-..-.  .
T Consensus        78 d~~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~~~~~  157 (393)
T d1i24a_          78 DFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIE  157 (393)
T ss_dssp             SHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSSCBC
T ss_pred             CHHHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeeccccccccccccccc
Confidence              123445554  49999999754211  111   234567899999999999999998877776654321100000  0


Q ss_pred             HHHH----------HhCCCCCCcEEEeeeccHHHHHHHHHHHcCCCCccee-eeEEcccCC
Q 022947          175 EVFK----------KVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAG  224 (289)
Q Consensus       175 ~~~~----------~~~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg~  224 (289)
                      +...          ......|...+|.+.+-...+....++..+++...++ ..|+|.+.+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~~  218 (393)
T d1i24a_         158 EGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTD  218 (393)
T ss_dssp             SSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCT
T ss_pred             cccccccccccccccccccccccHHHHHhhhhcccccccccccceeeeecccccccCCCcc
Confidence            0000          0000122233444444444555566778888888887 458886543

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.35  E-value=1.2e-06  Score=77.78  Aligned_cols=170  Identities=15%  Similarity=0.038  Sum_probs=107.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hh---HHhhhhcccCCceEEEEecC-C---CHHhhhCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PG---VTADISHMDTNAVVRGFLGQ-Q---QLEDALTGM  115 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g---~~~DL~~~~~~~~v~~~~~t-~---d~~eal~~a  115 (289)
                      ++++|.|+||+|++|++++..|.+.|+  +|..+|+...  ..   ....+........+..+.+. .   .......+.
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~   92 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQ--KVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV   92 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeeccccccccccccccc
Confidence            456899999999999999999999998  9999997431  11   11111111111223322111 1   233456888


Q ss_pred             CEEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC------cccHHHHHHHHHHhCCCCCCc
Q 022947          116 DIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV------NSTVPIAAEVFKKVGTYDPKR  187 (289)
Q Consensus       116 DiVIitag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPv------d~~t~~~~~~~~~~~~~~~~k  187 (289)
                      |.|++++....-+  ..+....+..|+.....+.+.+.+.....+|...|..+      ...+    |    .+-..|..
T Consensus        93 ~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~----E----~~~~~p~~  164 (341)
T d1sb8a_          93 DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKV----E----DTIGKPLS  164 (341)
T ss_dssp             SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBC----T----TCCCCCCS
T ss_pred             cccccccccccccccccCccchhheeehhHHHHHHHHHhcCCceEEEcccceeeCCCCCCCcc----C----CCCCCCCC
Confidence            9999887543211  12334567889999999999999887666665555311      1111    0    11233445


Q ss_pred             EEEeeeccHHHHHHHHHHHcCCCCccee-eeEEcccCC
Q 022947          188 LLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAG  224 (289)
Q Consensus       188 viG~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg~  224 (289)
                      ..|.+.+...++...+++..+++..-++ ..|+|.+.+
T Consensus       165 ~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~  202 (341)
T d1sb8a_         165 PYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQD  202 (341)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCC
T ss_pred             cchHHHHHHHHHHHHHHHHhCCCeEEEEeceeeccCcC
Confidence            6666666677777777888899888888 458888654

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.34  E-value=1.8e-06  Score=69.57  Aligned_cols=96  Identities=15%  Similarity=0.168  Sum_probs=62.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-chhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      |+||+|||+ |.+|+++|..|...++..+|+.+|+++ ....+.++....   .  ..  +........++|+||++.- 
T Consensus         1 Mk~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~---~--~~--~~~~~~~~~~~dlIila~p-   71 (171)
T d2g5ca2           1 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIID---E--GT--TSIAKVEDFSPDFVMLSSP-   71 (171)
T ss_dssp             CCEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCS---E--EE--SCGGGGGGTCCSEEEECSC-
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcch---h--hh--hhhhhhhccccccccccCC-
Confidence            457999998 999999999999999777999999976 222233222111   1  11  1111244578999999841 


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNP  165 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNP  165 (289)
                                     ...+.++.+.+..+. ++.+++-+++.
T Consensus        72 ---------------~~~~~~vl~~l~~~~~~~~ii~d~~s~   98 (171)
T d2g5ca2          72 ---------------VRTFREIAKKLSYILSEDATVTDQGSV   98 (171)
T ss_dssp             ---------------HHHHHHHHHHHHHHSCTTCEEEECCSC
T ss_pred             ---------------chhhhhhhhhhhccccccccccccccc
Confidence                           234556666676654 67777665554

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.31  E-value=9.6e-07  Score=71.12  Aligned_cols=64  Identities=20%  Similarity=0.254  Sum_probs=48.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      |||+|||. |.+|+.+|..|+..|+  +|..+|+++.  ...++....  .  ..   ..+..+.++++|+||++.
T Consensus         1 MkIgiIGl-G~MG~~~A~~L~~~G~--~V~~~d~~~~--~~~~~~~~~--~--~~---~~~~~e~~~~~d~ii~~v   64 (161)
T d1vpda2           1 MKVGFIGL-GIMGKPMSKNLLKAGY--SLVVSDRNPE--AIADVIAAG--A--ET---ASTAKAIAEQCDVIITML   64 (161)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHHTT--C--EE---CSSHHHHHHHCSEEEECC
T ss_pred             CEEEEEeh-hHHHHHHHHHHHHCCC--eEEEEeCCcc--hhHHHHHhh--h--hh---cccHHHHHhCCCeEEEEc
Confidence            79999998 9999999999999998  9999998752  122223221  1  11   235678999999999985

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=4e-07  Score=79.91  Aligned_cols=158  Identities=14%  Similarity=0.085  Sum_probs=94.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhh--hCCCCEEEEcCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDA--LTGMDIVIIPAGV  124 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~ea--l~~aDiVIitag~  124 (289)
                      +||.|+||+|++|++++..|++.|+  +++++|....    .|+.+..            ...+.  ..+.|+|+++++.
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~--~vi~~~~~~~----~~~~~~~------------~~~~~~~~~~~d~v~~~a~~   64 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGD--VELVLRTRDE----LNLLDSR------------AVHDFFASERIDQVYLAAAK   64 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTT--EEEECCCTTT----CCTTCHH------------HHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcC--EEEEecCchh----ccccCHH------------HHHHHHhhcCCCEEEEcchh
Confidence            4999999999999999999999997  6666665331    1222211            11112  2457899998765


Q ss_pred             CCCC---CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHH----HHHH-HHHhCCCCCCcEEEeeeccH
Q 022947          125 PRKP---GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPI----AAEV-FKKVGTYDPKRLLGVTMLDV  196 (289)
Q Consensus       125 ~~~~---g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~----~~~~-~~~~~~~~~~kviG~t~lds  196 (289)
                      ....   .....+++..|+.....+++.+.++.-.-+|.+.|.-  +.-..    +.|- .....-.+++..+|.+.+..
T Consensus        65 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~~~i~~SS~~--vyg~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~  142 (315)
T d1e6ua_          65 VGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSC--IYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAG  142 (315)
T ss_dssp             CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGG--GSCTTCCSSBCGGGTTSSCCCGGGHHHHHHHHHH
T ss_pred             ccccccchhhHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCce--EcCCCCCCCccCCccccCCCCCCCCHHHHHHHHH
Confidence            4211   1223456778999999999999988755454443311  10000    0000 00000111223456666666


Q ss_pred             HHHHHHHHHHcCCCCccee-eeEEcccCC
Q 022947          197 VRANTFVAEVLGLDPREVD-VPVVGGHAG  224 (289)
Q Consensus       197 ~R~~~~lA~~l~v~~~~V~-~~V~G~hg~  224 (289)
                      .++....++..|++..-++ ..|+|.++.
T Consensus       143 E~~~~~~~~~~gl~~~ilR~~~vyGp~~~  171 (315)
T d1e6ua_         143 IKLCESYNRQYGRDYRSVMPTNLYGPHDN  171 (315)
T ss_dssp             HHHHHHHHHHHCCEEEEEEECEEESTTCC
T ss_pred             HHHHHHHHHHhCCCEEEEeeccEECCCCC
Confidence            6666667788898888888 559998764

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.29  E-value=9.2e-06  Score=64.67  Aligned_cols=98  Identities=13%  Similarity=0.153  Sum_probs=62.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCC--CccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINP--LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g--~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      |+||+|+||+|+||+-+...|+.++  ...+++++......+.........  ..+..   ..+. ++++++|++|++++
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~--~~~~~---~~~~-~~~~~~DivF~a~~   74 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTT--GTLQD---AFDL-EALKALDIIVTCQG   74 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCC--CBCEE---TTCH-HHHHTCSEEEECSC
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCc--eeeec---ccch-hhhhcCcEEEEecC
Confidence            4599999999999999987666654  346888887665333322222211  11111   1232 57899999999863


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd  167 (289)
                                      ....+++++.+.+.+.+++|  ++|..+
T Consensus        75 ----------------~~~s~~~~~~~~~~g~~~~V--ID~Ss~  100 (146)
T d1t4ba1          75 ----------------GDYTNEIYPKLRESGWQGYW--IDAASS  100 (146)
T ss_dssp             ----------------HHHHHHHHHHHHHTTCCCEE--EECSST
T ss_pred             ----------------chHHHHhhHHHHhcCCCeec--ccCCcc
Confidence                            35566777777776666555  455543

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=98.21  E-value=1.9e-06  Score=76.35  Aligned_cols=105  Identities=13%  Similarity=0.137  Sum_probs=70.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEec----CCC-HHhhhCCCCEEEEc
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG----QQQ-LEDALTGMDIVIIP  121 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~----t~d-~~eal~~aDiVIit  121 (289)
                      |||.|+||+|+||++++..|+..|.. +|+.+|+.... . .++..   .+++..+.+    ..+ .+..++++|+||++
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~-~V~~ld~~~~~-~-~~~~~---~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~   74 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHY-EVYGLDIGSDA-I-SRFLN---HPHFHFVEGDISIHSEWIEYHVKKCDVVLPL   74 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTC-EEEEEESCCGG-G-GGGTT---CTTEEEEECCTTTCSHHHHHHHHHCSEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCC-EEEEEeCCCcc-h-hhhcc---CCCeEEEECccCChHHHHHHHHhCCCccccc
Confidence            79999999999999999988888742 89999986521 1 11111   122333221    112 22367899999999


Q ss_pred             CCCCCCCCC--chhhHHHhhHHHHHHHHHHHHHhCCCc
Q 022947          122 AGVPRKPGM--TRDDLFNINAGIVKTLCEGIAKCCPKA  157 (289)
Q Consensus       122 ag~~~~~g~--~r~d~~~~N~~i~~~i~~~i~~~~p~a  157 (289)
                      |+.......  .-...+..|+.....+++.+.+....-
T Consensus        75 a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~~  112 (342)
T d2blla1          75 VAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRI  112 (342)
T ss_dssp             BCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEE
T ss_pred             cccccccccccCCccccccccccccccccccccccccc
Confidence            986532211  123567889999999999998876543

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.21  E-value=1.7e-06  Score=77.16  Aligned_cols=113  Identities=19%  Similarity=0.090  Sum_probs=72.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEec----CCCHHhhhC--CCCEEE
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG----QQQLEDALT--GMDIVI  119 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~~----t~d~~eal~--~aDiVI  119 (289)
                      .|.|+||+||+|++++..|+..|+  +|+.+|....  ........... ...+..+..    ..++++.++  +.|+||
T Consensus         3 ~ILVTGatGfIG~~lv~~Ll~~g~--~V~~~d~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi   79 (347)
T d1z45a2           3 IVLVTGGAGYIGSHTVVELIENGY--DCVVADNLSNSTYDSVARLEVLT-KHHIPFYEVDLCDRKGLEKVFKEYKIDSVI   79 (347)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTHHHHHHHHHH-TSCCCEEECCTTCHHHHHHHHHHSCCCEEE
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcC--eEEEEECCCCcchhHHHhHHhhc-ccCCeEEEeecCCHHHHHHHHhccCCCEEE
Confidence            588999999999999999999998  9999996441  11111111110 112221111    112333343  789999


Q ss_pred             EcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          120 IPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       120 itag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      ++|+.....  .+....+...|+.....+.+..++.....++...|
T Consensus        80 hlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS  125 (347)
T d1z45a2          80 HFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSS  125 (347)
T ss_dssp             ECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             EccccccccccccCcccccccchhhhHHHHHHHHhcccceEEeecc
Confidence            999865321  12234567789999999999999887676665554

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=98.18  E-value=9.1e-06  Score=72.28  Aligned_cols=106  Identities=14%  Similarity=0.021  Sum_probs=69.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhccc-CCceEEEE----ecCCCHHhhhCCCCEEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMD-TNAVVRGF----LGQQQLEDALTGMDIVI  119 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~~-~~~~v~~~----~~t~d~~eal~~aDiVI  119 (289)
                      .+||.|+||+|+||++++..|++.|+  +|+...++.. ......+.+.. .......+    .....+.+++.++|.|+
T Consensus        11 gk~VlVTG~sGfIGs~l~~~Ll~~G~--~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~   88 (342)
T d1y1pa1          11 GSLVLVTGANGFVASHVVEQLLEHGY--KVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVA   88 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEE
T ss_pred             cCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhh
Confidence            46999999999999999999999998  8877666541 11111111111 01111111    11234557899999999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC
Q 022947          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC  154 (289)
Q Consensus       120 itag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~  154 (289)
                      .+++... ...+...+...|+....++.+.+.++.
T Consensus        89 ~~a~~~~-~~~~~~~~~~~nv~gt~~ll~~~~~~~  122 (342)
T d1y1pa1          89 HIASVVS-FSNKYDEVVTPAIGGTLNALRAAAATP  122 (342)
T ss_dssp             ECCCCCS-CCSCHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             hhccccc-ccccccccccchhhhHHHHHHhhhccc
Confidence            9987543 334445566779999999999998874

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.17  E-value=5e-06  Score=68.37  Aligned_cols=163  Identities=17%  Similarity=0.024  Sum_probs=89.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEE-EecCCCHHhhhCCCCEEEEcCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~eal~~aDiVIitag  123 (289)
                      .+++|.|+||+|++|++++..|+..|+.-.++.+.+++.  ...++....  ..+.. .....++.++++++|.||++++
T Consensus         2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~--~~~~~~~~~--~~~~~d~~~~~~~~~~~~~~d~vi~~a~   77 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQ--GKEKIGGEA--DVFIGDITDADSINPAFQGIDALVILTS   77 (252)
T ss_dssp             SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHH--HHHHTTCCT--TEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHH--HHHhccCCc--EEEEeeeccccccccccccceeeEEEEe
Confidence            456999999999999999999999987334554544431  111122110  01110 1112345678999999999987


Q ss_pred             CCCCC---------------CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcE
Q 022947          124 VPRKP---------------GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRL  188 (289)
Q Consensus       124 ~~~~~---------------g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kv  188 (289)
                      .....               ..........|....+.++...............+...+.-            ..+ ...
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~------------~~~-~~~  144 (252)
T d2q46a1          78 AVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNP------------DHP-LNK  144 (252)
T ss_dssp             CCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTCT------------TCG-GGG
T ss_pred             eccccccccchhhhhhcccccccchhhhccccccceeeccccccccccccccccccccCCC------------Ccc-ccc
Confidence            53211               01122344556777777777777666444433322111110            000 011


Q ss_pred             EEe-eeccHHHHHHHHHHHcCCCCccee-eeEEcccCC
Q 022947          189 LGV-TMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAG  224 (289)
Q Consensus       189 iG~-t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg~  224 (289)
                      ... .......+...+.+..+++..-++ ..++|.++.
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~ilRp~~v~g~~~~  182 (252)
T d2q46a1         145 LGNGNILVWKRKAEQYLADSGTPYTIIRAGGLLDKEGG  182 (252)
T ss_dssp             GGGCCHHHHHHHHHHHHHHSSSCEEEEEECEEECSCTT
T ss_pred             ccccchhhhhhhhhhhhhcccccceeecceEEECCCcc
Confidence            111 122233445666677788877777 558888754

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.17  E-value=2.1e-06  Score=70.95  Aligned_cols=103  Identities=17%  Similarity=0.262  Sum_probs=63.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc------hhH-------HhhhhcccCCceEEEEecCCCHHhhhC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT------PGV-------TADISHMDTNAVVRGFLGQQQLEDALT  113 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~------~g~-------~~DL~~~~~~~~v~~~~~t~d~~eal~  113 (289)
                      |||+|||. |+||..+|..++ .|+  +|+.+|+++.      .++       ..++... .......   +.+..++..
T Consensus         1 MkI~ViGl-G~vGl~~a~~~a-~g~--~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~-~~~~~~~---~~~~~~~~~   72 (196)
T d1dlja2           1 MKIAVAGS-GYVGLSLGVLLS-LQN--EVTIVDILPSKVDKINNGLSPIQDEYIEYYLKS-KQLSIKA---TLDSKAAYK   72 (196)
T ss_dssp             CEEEEECC-SHHHHHHHHHHT-TTS--EEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHH-SCCCEEE---ESCHHHHHH
T ss_pred             CEEEEECC-ChhHHHHHHHHH-CCC--cEEEEECCHHHHHHHhhcccccchhhHHHHhhh-hhhhhhc---cchhhhhhh
Confidence            79999998 999999997664 687  9999999871      111       0111111 1122222   234567889


Q ss_pred             CCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEe
Q 022947          114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI  162 (289)
Q Consensus       114 ~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~  162 (289)
                      ++|+++++.+.|.....+-     .....+....+.+....+..++++-
T Consensus        73 ~~~ii~v~vpt~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~iii~  116 (196)
T d1dlja2          73 EAELVIIATPTNYNSRINY-----FDTQHVETVIKEVLSVNSHATLIIK  116 (196)
T ss_dssp             HCSEEEECCCCCEETTTTE-----ECCHHHHHHHHHHHHHCSSCEEEEC
T ss_pred             ccccccccCCccccccCCC-----cceeEEeehhhhhhhcccceeEEee
Confidence            9999999977664322111     1234455566666666666665553

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.13  E-value=9.7e-06  Score=73.04  Aligned_cols=177  Identities=16%  Similarity=0.146  Sum_probs=100.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHh-CCCccEEEEEeCCC----------chh-HHhhhhccc------CCceEEEEec-CC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN----------TPG-VTADISHMD------TNAVVRGFLG-QQ  106 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~-~g~~~eI~LvD~~~----------~~g-~~~DL~~~~------~~~~v~~~~~-t~  106 (289)
                      -|||.|+||+||+|++++..|+. .++  +|+++|.-.          ... ....+....      ....+..+.+ -.
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~--~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~   79 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNH--SVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVR   79 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCC--EEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTT
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCC--EEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECccc
Confidence            36999999999999999987764 677  999999521          111 111111111      0122222211 11


Q ss_pred             C---HHhhh---CCCCEEEEcCCCCCCCC--CchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC-cccH--HHHHH
Q 022947          107 Q---LEDAL---TGMDIVIIPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV-NSTV--PIAAE  175 (289)
Q Consensus       107 d---~~eal---~~aDiVIitag~~~~~g--~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPv-d~~t--~~~~~  175 (289)
                      |   +++++   +++|+||++|+......  .........|+.....+.+..++..+..++...+--+ ....  ....+
T Consensus        80 d~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  159 (383)
T d1gy8a_          80 NEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTN  159 (383)
T ss_dssp             CHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----C
T ss_pred             CHHHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCccccccccccccccccccccccc
Confidence            2   23333   57899999997543211  1223456789999999999999988766554432110 0000  00000


Q ss_pred             --HHHHhCCCCCCcEEEeeeccHHHHHHHHHHHcCCCCccee-eeEEcccCC
Q 022947          176 --VFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAG  224 (289)
Q Consensus       176 --~~~~~~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg~  224 (289)
                        -+.....+.|...+|.+.+...++-....+..|++...++ ..+.|....
T Consensus       160 ~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~~~  211 (383)
T d1gy8a_         160 AEPIDINAKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHED  211 (383)
T ss_dssp             CCCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTT
T ss_pred             ccccccccCCCCCCHHHhhHhHHHHHHHHHHHHhCCCEEEEecceeeccCcc
Confidence              0000112334555666666666677777788899888887 458886543

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=98.12  E-value=2.5e-05  Score=62.13  Aligned_cols=111  Identities=13%  Similarity=0.161  Sum_probs=72.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCC--CccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINP--LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g--~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      |||+|+||+|+||+-+...|....  ...++.++......++..++....  ..+..   ..+ .+.++++|+||++.+ 
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~--~~~~~---~~~-~~~~~~~DvvF~alp-   73 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDA--GMLHD---AFD-IESLKQLDAVITCQG-   73 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCC--CBCEE---TTC-HHHHTTCSEEEECSC-
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcc--eeeec---ccc-hhhhccccEEEEecC-
Confidence            799999999999999987666533  245888876655434433222111  11111   224 367899999999853 


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeec
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTML  194 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t~l  194 (289)
                                     -...+++++.+.+.+.+++|  +.|..|.             .++++-++++.-+
T Consensus        74 ---------------~~~s~~~~~~l~~~g~~~~V--IDlSsdf-------------R~~~dvpl~lPEi  113 (147)
T d1mb4a1          74 ---------------GSYTEKVYPALRQAGWKGYW--IDAASTL-------------RMDKEAIITLDPV  113 (147)
T ss_dssp             ---------------HHHHHHHHHHHHHTTCCSEE--EESSSTT-------------TTCTTEEEECHHH
T ss_pred             ---------------chHHHHHhHHHHHcCCceEE--EeCCccc-------------cccCCceEEeCCc
Confidence                           24466788888888777766  5666643             4667777777543

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.10  E-value=1.3e-05  Score=69.97  Aligned_cols=167  Identities=15%  Similarity=0.018  Sum_probs=96.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEec-CCCH---Hhhh--CCCCEEEE
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQL---EDAL--TGMDIVII  120 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~-t~d~---~eal--~~aDiVIi  120 (289)
                      +||.|+||+|++|++++..|+.+|+  +|+.+|+.........+.+.....++..+.. -.|.   .+.+  ...+++++
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~--~V~~~~r~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~   78 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGY--RVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYN   78 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCCcccHHHHHHhcccCCcEEEEccccChHHhhhhhcccccccccc
Confidence            4899999999999999999999998  9999998762111111222222233443321 1122   1112  24667777


Q ss_pred             cCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC------CCcccHHHHHHHHHHhCCCCCCcEEEee
Q 022947          121 PAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN------PVNSTVPIAAEVFKKVGTYDPKRLLGVT  192 (289)
Q Consensus       121 tag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN------Pvd~~t~~~~~~~~~~~~~~~~kviG~t  192 (289)
                      +++.....  .....+.+..|+.....+++.++++.+..+++..|-      +.+...       .+.+-+.|....|.+
T Consensus        79 ~a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~~~~~~-------~E~~~~~p~~~Y~~s  151 (321)
T d1rpna_          79 LAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQ-------DENTPFYPRSPYGVA  151 (321)
T ss_dssp             CCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSB-------CTTSCCCCCSHHHHH
T ss_pred             ccccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCcccCCCC-------CCCCCccccChhHHH
Confidence            76543211  122355678899999999999999987766665532      010000       011112233344445


Q ss_pred             eccHHHHHHHHHHHcCCCCcceee-eEEccc
Q 022947          193 MLDVVRANTFVAEVLGLDPREVDV-PVVGGH  222 (289)
Q Consensus       193 ~lds~R~~~~lA~~l~v~~~~V~~-~V~G~h  222 (289)
                      .+...++.....+..+++...++. .+.|..
T Consensus       152 K~~~E~~~~~~~~~~~~~~~~lr~~~vyGp~  182 (321)
T d1rpna_         152 KLYGHWITVNYRESFGLHASSGILFNHESPL  182 (321)
T ss_dssp             HHHHHHHHHHHHHHHCCCEEEEEECCEECTT
T ss_pred             HHHHHHHHHHHHhhcCCcEEEEEEecccCCC
Confidence            554555555566777777666663 377754

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.08  E-value=2.7e-06  Score=70.55  Aligned_cols=106  Identities=11%  Similarity=0.091  Sum_probs=67.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEec-CCCH-HhhhCCCCEEEEcCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQL-EDALTGMDIVIIPAG  123 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~-t~d~-~eal~~aDiVIitag  123 (289)
                      ++||.|+||+|++|++++..|+..+...+|....+++...          ...+..... -.+. .....+.|.||.++|
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~----------~~~~~~~~~d~~~~~~~~~~~~d~vi~~~g   71 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE----------HPRLDNPVGPLAELLPQLDGSIDTAFCCLG   71 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC----------CTTEECCBSCHHHHGGGCCSCCSEEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhh----------cccccccccchhhhhhccccchheeeeeee
Confidence            3599999999999999999999998755666665443110          011111000 0011 122356899999988


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEE
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL  161 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv  161 (289)
                      ..........++...|......+++..++....-++.+
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~~i~~  109 (212)
T d2a35a1          72 TTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVV  109 (212)
T ss_dssp             CCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEE
T ss_pred             eeccccccccccccchhhhhhhcccccccccccccccc
Confidence            65433333456777888888899998887665554443

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.07  E-value=6e-06  Score=66.39  Aligned_cols=65  Identities=23%  Similarity=0.404  Sum_probs=49.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      |+||++||. |.+|+.+|..|++.|+  +|..+|+++.  ...++....   ...    ..++.+.++++|+|+++.
T Consensus         1 M~kIg~IGl-G~MG~~iA~~L~~~g~--~v~~~d~~~~--~~~~~~~~~---~~~----~~~~~e~~~~~diii~~v   65 (162)
T d3cuma2           1 MKQIAFIGL-GHMGAPMATNLLKAGY--LLNVFDLVQS--AVDGLVAAG---ASA----ARSARDAVQGADVVISML   65 (162)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHTTC--EEEEECSSHH--HHHHHHHTT---CEE----CSSHHHHHTSCSEEEECC
T ss_pred             CCEEEEEEE-HHHHHHHHHHHHHCCC--eEEEEECchh--hhhhhhhhh---ccc----cchhhhhccccCeeeecc
Confidence            469999998 9999999999999998  9999998752  222333322   111    235679999999999985

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=1.4e-05  Score=70.58  Aligned_cols=166  Identities=11%  Similarity=0.021  Sum_probs=97.3

Q ss_pred             CEE-EEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc---hhHHhhhhccc---CCceEEEEecC-CC---HHhhh--C
Q 022947           47 FKV-AVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMD---TNAVVRGFLGQ-QQ---LEDAL--T  113 (289)
Q Consensus        47 ~KI-~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~---~g~~~DL~~~~---~~~~v~~~~~t-~d---~~eal--~  113 (289)
                      +|| .|+||+|+||++++..|+..|+  +|+.+|+...   .+...++....   ...+++.+.+. .|   +.+++  .
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~   78 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGY--EVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEV   78 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhc
Confidence            489 6999999999999999999998  9999998651   11111111111   11234433221 12   22333  3


Q ss_pred             CCCEEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhC-C-CcEEEEec------CCCc-ccHHHHHHHHHHhCC
Q 022947          114 GMDIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCC-P-KAIVNLIS------NPVN-STVPIAAEVFKKVGT  182 (289)
Q Consensus       114 ~aDiVIitag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~-p-~aiviv~t------NPvd-~~t~~~~~~~~~~~~  182 (289)
                      +.++|+++++.....  -....+.+..|+.....+.+.+++++ . ...++.+|      +|-+ .+.        +-+.
T Consensus        79 ~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~--------E~~~  150 (347)
T d1t2aa_          79 KPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQK--------ETTP  150 (347)
T ss_dssp             CCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBC--------TTSC
T ss_pred             ccceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCCCCCCCC--------CCCC
Confidence            556888877654211  12234556789999999999998876 2 34555554      1111 111        1123


Q ss_pred             CCCCcEEEeeeccHHHHHHHHHHHcCCCCccee-eeEEccc
Q 022947          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (289)
Q Consensus       183 ~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~h  222 (289)
                      +.|....|.+.+...++-...++..+++...++ ..|.|..
T Consensus       151 ~~P~~~Yg~sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~  191 (347)
T d1t2aa_         151 FYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPR  191 (347)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTT
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCC
Confidence            445556666666566665666777788766666 4488864

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=98.03  E-value=5.1e-06  Score=73.62  Aligned_cols=114  Identities=18%  Similarity=0.132  Sum_probs=72.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcccCCceEEEEec-CCC---HHhhhC--CCCEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLG-QQQ---LEDALT--GMDIV  118 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~~~~~~v~~~~~-t~d---~~eal~--~aDiV  118 (289)
                      .+||.|+||+|+||++++..|+..|+  +|..+|++.. .....+....  ...+..+.+ -.|   +.++++  ..|+|
T Consensus         8 ~KkILVTG~tGfIGs~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~~~--~~~i~~~~~Dl~d~~~l~~~~~~~~~~~v   83 (356)
T d1rkxa_           8 GKRVFVTGHTGFKGGWLSLWLQTMGA--TVKGYSLTAPTVPSLFETARV--ADGMQSEIGDIRDQNKLLESIREFQPEIV   83 (356)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCSSSSCHHHHTTT--TTTSEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCccHHHHhhhhc--ccCCeEEEeeccChHhhhhhhhhchhhhh
Confidence            46999999999999999999999998  9999998762 1111111111  112222111 112   334444  45889


Q ss_pred             EEcCCCCCCCC--CchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          119 IIPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       119 Iitag~~~~~g--~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      +++++.+....  ..-.+....|+.....+.+.+.+......++..|
T Consensus        84 ~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s  130 (356)
T d1rkxa_          84 FHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNIT  130 (356)
T ss_dssp             EECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEEC
T ss_pred             hhhhccccccccccCCccccccccccchhhhhhhhcccccccccccc
Confidence            99887542210  1123456779999999999999987666555443

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=97.96  E-value=3.4e-06  Score=72.30  Aligned_cols=99  Identities=17%  Similarity=0.181  Sum_probs=63.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhC--CCCEEEEcCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVIIPAGV  124 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~--~aDiVIitag~  124 (289)
                      |||.|+||+|+||++++..|...|   +++.+|..... ...|+.+.            ..+++.++  +.|+||++||.
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g---~~v~~~~~~~~-~~~Dl~~~------------~~~~~~i~~~~~D~Vih~Aa~   64 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVG---NLIALDVHSKE-FCGDFSNP------------KGVAETVRKLRPDVIVNAAAH   64 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTS---EEEEECTTCSS-SCCCTTCH------------HHHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCC---CEEEEECCCcc-ccCcCCCH------------HHHHHHHHHcCCCEEEEeccc
Confidence            799999999999999999888777   56667765421 11222221            12334454  45999999986


Q ss_pred             CCC--CCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          125 PRK--PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       125 ~~~--~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      ...  ...........|......+.+..++.+  ..++++|
T Consensus        65 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~~s  103 (298)
T d1n2sa_          65 TAVDKAESEPELAQLLNATSVEAIAKAANETG--AWVVHYS  103 (298)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTT--CEEEEEE
T ss_pred             ccccccccCccccccccccccccchhhhhccc--ccccccc
Confidence            421  122334456778888888888877664  3444443

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=1.2e-05  Score=71.31  Aligned_cols=111  Identities=19%  Similarity=0.079  Sum_probs=68.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-------chhH-HhhhhcccCCceEEEEecC-CC---HHhhhCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-------TPGV-TADISHMDTNAVVRGFLGQ-QQ---LEDALTG  114 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-------~~g~-~~DL~~~~~~~~v~~~~~t-~d---~~eal~~  114 (289)
                      +||.|+||+|+||++++..|+..|+  +|+.+|...       .... ...+.... ..++..+.+. .|   +++.+.+
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~--~V~~ld~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~l~~~~~~   79 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGY--LPVVIDNFHNAFRGGGSLPESLRRVQELT-GRSVEFEEMDILDQGALQRLFKK   79 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTC--CEEEEECSSSSCBCSSSSBHHHHHHHHHH-TCCCEEEECCTTCHHHHHHHHHH
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCCccccccccchHHHHHHHHhc-CCCcEEEEeeccccccccccccc
Confidence            5899999999999999999999998  899998632       0001 11111111 2233332211 22   3344544


Q ss_pred             CC--EEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEE
Q 022947          115 MD--IVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN  160 (289)
Q Consensus       115 aD--iVIitag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aivi  160 (289)
                      .|  +|+++|+.+...  .....+.+..|+.....+...+++++.+-++.
T Consensus        80 ~~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~~~i~  129 (346)
T d1ek6a_          80 YSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVF  129 (346)
T ss_dssp             CCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cccccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcCcccccc
Confidence            54  677788754211  01234567889999999999999887664443

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.92  E-value=3.5e-06  Score=74.16  Aligned_cols=174  Identities=11%  Similarity=-0.043  Sum_probs=93.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc---hhHHhhhhcc---cCCceEEEEe-cCCCH---Hhhh--CC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHM---DTNAVVRGFL-GQQQL---EDAL--TG  114 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~---~g~~~DL~~~---~~~~~v~~~~-~t~d~---~eal--~~  114 (289)
                      +|+.|+||+|++|++++..|+.+|+  +|+.+|+...   ......+...   .....+..+. +..+.   .+.+  .+
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~   79 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGY--EVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIK   79 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcC--EEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhc
Confidence            4899999999999999999999998  9999998531   1111111110   0012233221 11222   2233  46


Q ss_pred             CCEEEEcCCCCCCCC--CchhhHHHhhHHHHHHHHHHHHHhC----CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcE
Q 022947          115 MDIVIIPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCC----PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRL  188 (289)
Q Consensus       115 aDiVIitag~~~~~g--~~r~d~~~~N~~i~~~i~~~i~~~~----p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kv  188 (289)
                      .|+||++|+......  ..-.+....|......+...+++.+    ....++..+ .+...... .....+..-+.|...
T Consensus        80 ~D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~s-s~~~~~~~-~~~~~E~~~~~p~~~  157 (339)
T d1n7ha_          80 PDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAG-SSEMFGST-PPPQSETTPFHPRSP  157 (339)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEE-EGGGGTTS-CSSBCTTSCCCCCSH
T ss_pred             cchhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecc-cceecccC-CCCCCCCCCCCCcch
Confidence            799999998643211  1223455667776776666665432    223333322 11110000 000001112345555


Q ss_pred             EEeeeccHHHHHHHHHHHcCCCCccee-eeEEcccCC
Q 022947          189 LGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAG  224 (289)
Q Consensus       189 iG~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg~  224 (289)
                      .|.+.+...++-...++..+++...++ ..|+|.++.
T Consensus       158 Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~  194 (339)
T d1n7ha_         158 YAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRG  194 (339)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSC
T ss_pred             hhHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCCC
Confidence            666666566666666777888777777 448897644

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.92  E-value=6.4e-06  Score=65.66  Aligned_cols=65  Identities=17%  Similarity=0.271  Sum_probs=47.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      |||+|||+ |.+|++++..|...+.  ++.++|++..  ...++....   .+.   .+.+.++++++||+||++.
T Consensus         1 MkIg~IG~-G~mG~al~~~l~~~~~--~i~v~~r~~~--~~~~l~~~~---g~~---~~~~~~~~~~~~dvIilav   65 (152)
T d2ahra2           1 MKIGIIGV-GKMASAIIKGLKQTPH--ELIISGSSLE--RSKEIAEQL---ALP---YAMSHQDLIDQVDLVILGI   65 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTTSSC--EEEEECSSHH--HHHHHHHHH---TCC---BCSSHHHHHHTCSEEEECS
T ss_pred             CEEEEEec-cHHHHHHHHHHHhCCC--eEEEEcChHH--hHHhhcccc---cee---eechhhhhhhccceeeeec
Confidence            79999998 9999999999988887  9999998652  122222111   011   1246778899999999986

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=97.83  E-value=1.1e-05  Score=68.80  Aligned_cols=89  Identities=21%  Similarity=0.205  Sum_probs=58.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhC--CCCEEEEcCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVIIPAGV  124 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~--~aDiVIitag~  124 (289)
                      |||.|+||+|++|++++..|...|+  +|+.+|+++     .|+.+..            ++++.++  +.|+||.+++.
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~--~Vi~~~r~~-----~D~~d~~------------~~~~~l~~~~~d~vih~a~~   62 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNV--EVIPTDVQD-----LDITNVL------------AVNKFFNEKKPNVVINCAAH   62 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSE--EEEEECTTT-----CCTTCHH------------HHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--EEEEeechh-----ccCCCHH------------HHHHHHHHcCCCEEEeeccc
Confidence            7999999999999999999999998  999998764     2232211            1234443  66999999875


Q ss_pred             CCCCC--CchhhHHHhhHHHHHHHHHHHHHhC
Q 022947          125 PRKPG--MTRDDLFNINAGIVKTLCEGIAKCC  154 (289)
Q Consensus       125 ~~~~g--~~r~d~~~~N~~i~~~i~~~i~~~~  154 (289)
                      .....  .........|......+........
T Consensus        63 ~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~   94 (281)
T d1vl0a_          63 TAVDKCEEQYDLAYKINAIGPKNLAAAAYSVG   94 (281)
T ss_dssp             CCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred             cccccccccchhhccccccccccccccccccc
Confidence            42111  1123344556666666666555543

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.78  E-value=3.9e-05  Score=62.17  Aligned_cols=97  Identities=15%  Similarity=0.161  Sum_probs=62.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccC-CceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~-~~~v~~~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      .+|+|||. |.+|+.+|..|+..|+  +|+.+|+++.+  ..++..... ...........++.+.+.++|.++++..  
T Consensus         3 ~nIg~IGl-G~MG~~mA~~L~~~G~--~V~v~dr~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~--   75 (176)
T d2pgda2           3 ADIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTVSK--VDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVK--   75 (176)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSTHH--HHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSC--
T ss_pred             CcEEEEeE-hHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHhccccccccchhhhhhhhhhhcccceEEEecC--
Confidence            37999998 9999999999999998  99999998622  222222211 1111111112355678899999999842  


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEec
Q 022947          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS  163 (289)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~t  163 (289)
                                   +.+.+.++...+.... |..+++..|
T Consensus        76 -------------~~~~v~~v~~~l~~~~~~g~iiid~s  101 (176)
T d2pgda2          76 -------------AGQAVDNFIEKLVPLLDIGDIIIDGG  101 (176)
T ss_dssp             -------------TTHHHHHHHHHHHHHCCTTCEEEECS
T ss_pred             -------------chHHHHHHHHHHHhccccCcEEEecC
Confidence                         2244555566666655 556665544

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.77  E-value=1.5e-05  Score=63.15  Aligned_cols=64  Identities=17%  Similarity=0.204  Sum_probs=46.1

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      |||+|||. |.+|+.++..|.+.|+  ++..+|..+...... .....   .+.     .+..++++++|+||++.
T Consensus         1 MkIgiIG~-G~mG~~ia~~l~~~g~--~v~~~~~~~~~~~~~-~~~~~---~~~-----~~~~e~~~~~diIi~~v   64 (152)
T d1i36a2           1 LRVGFIGF-GEVAQTLASRLRSRGV--EVVTSLEGRSPSTIE-RARTV---GVT-----ETSEEDVYSCPVVISAV   64 (152)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTC--EEEECCTTCCHHHHH-HHHHH---TCE-----ECCHHHHHTSSEEEECS
T ss_pred             CEEEEEcH-HHHHHHHHHHHHHCCC--eEEEEcCchhHHHHH-hhhcc---ccc-----ccHHHHHhhcCeEEEEe
Confidence            79999998 9999999999999998  899998765221111 11111   111     12468899999999985

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=97.76  E-value=3e-05  Score=66.45  Aligned_cols=77  Identities=17%  Similarity=0.091  Sum_probs=50.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--h-hHHhhhhcccCCceEEEEe----cCCCHHhhhCCCCE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--P-GVTADISHMDTNAVVRGFL----GQQQLEDALTGMDI  117 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~-g~~~DL~~~~~~~~v~~~~----~t~d~~eal~~aDi  117 (289)
                      +++||.|+||+|++|++++..|+..|+  +|+.++++..  . .....+.... ...+..+.    ...++.+++++++.
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~-~~~v~~v~~d~~d~~~~~~~~~~~~~   78 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGH--PTYVLFRPEVVSNIDKVQMLLYFK-QLGAKLIEASLDDHQRLVDALKQVDV   78 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCSCCSSCHHHHHHHHHHH-TTTCEEECCCSSCHHHHHHHHTTCSE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCCcccchhHHHHHhhhc-cCCcEEEEeecccchhhhhhccCcch
Confidence            467999999999999999999999997  8998887652  1 1111111111 11122211    12245577899999


Q ss_pred             EEEcCCC
Q 022947          118 VIIPAGV  124 (289)
Q Consensus       118 VIitag~  124 (289)
                      ++.+++.
T Consensus        79 ~~~~~~~   85 (312)
T d1qyda_          79 VISALAG   85 (312)
T ss_dssp             EEECCCC
T ss_pred             hhhhhhh
Confidence            9998754

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.75  E-value=6.4e-05  Score=60.71  Aligned_cols=74  Identities=14%  Similarity=0.213  Sum_probs=46.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchh--HHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g--~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      .|||+|||. |.+|+.++..|+..|+  +|..+|+++.+.  ...+.......+.........++...+..++.++++.
T Consensus         1 ~MkIGvIGl-G~MG~~ma~~L~~~G~--~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (178)
T d1pgja2           1 SMDVGVVGL-GVMGANLALNIAEKGF--KVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILV   76 (178)
T ss_dssp             CBSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECC
T ss_pred             CCEEEEEee-hHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEee
Confidence            379999998 9999999999999998  999999976221  1111111111223332211123344567788877764

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=0.00023  Score=61.07  Aligned_cols=160  Identities=16%  Similarity=0.172  Sum_probs=91.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCceEEEEe-cCCC----------HHhhhC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ----------LEDALT  113 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~~-~t~d----------~~eal~  113 (289)
                      +.+.|+||++-+|..+|..|++.|.  .|++.|+++  .+..+.++.......++..+. +-++          ..+.+.
T Consensus        11 Kv~lITGas~GIG~aiA~~la~~G~--~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~g   88 (257)
T d1xg5a_          11 RLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS   88 (257)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            4688999999999999999999998  899999886  223333444332222333221 1112          223356


Q ss_pred             CCCEEEEcCCCCCCC---CCc---hhhHHHhh----HHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCC
Q 022947          114 GMDIVIIPAGVPRKP---GMT---RDDLFNIN----AGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (289)
Q Consensus       114 ~aDiVIitag~~~~~---g~~---r~d~~~~N----~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~  182 (289)
                      .-|++|..||.....   ..+   ....+..|    +-..+.+++.+++.. ..+.|++++-.....            .
T Consensus        89 ~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~------------~  156 (257)
T d1xg5a_          89 GVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHR------------V  156 (257)
T ss_dssp             CCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTS------------C
T ss_pred             CCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcC------------C
Confidence            899999999864321   112   12234444    456677788777765 467887776443211            1


Q ss_pred             CCCC--cEEEeeeccHHHHHHHHHHHcCCCCcceeeeEEc
Q 022947          183 YDPK--RLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (289)
Q Consensus       183 ~~~~--kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~G  220 (289)
                      .|..  -.++.+.-.-..|-+.+|.+|...+..|++.++.
T Consensus       157 ~p~~~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~  196 (257)
T d1xg5a_         157 LPLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCIS  196 (257)
T ss_dssp             CSCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred             CCCcccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEe
Confidence            1110  0112221112335677788775455667766553

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.67  E-value=6e-05  Score=61.82  Aligned_cols=83  Identities=17%  Similarity=0.186  Sum_probs=56.4

Q ss_pred             CCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccC-CceEEEEecCCCHHhhhCCCCE
Q 022947           41 KGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDI  117 (289)
Q Consensus        41 ~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~-~~~v~~~~~t~d~~eal~~aDi  117 (289)
                      +...+.++|.|+||+|.+|..++..|++.|.  +|+++|++..  ......+..... ...........+.++.+.++|+
T Consensus        18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDi   95 (191)
T d1luaa1          18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGA--EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHF   95 (191)
T ss_dssp             TSCCTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSE
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHhhcc--chhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCe
Confidence            3344567999999999999999999999997  8999999872  222222222111 1111122223456778999999


Q ss_pred             EEEcCCCC
Q 022947          118 VIIPAGVP  125 (289)
Q Consensus       118 VIitag~~  125 (289)
                      +|.++|.+
T Consensus        96 lin~Ag~g  103 (191)
T d1luaa1          96 VFTAGAIG  103 (191)
T ss_dssp             EEECCCTT
T ss_pred             eeecCccc
Confidence            99998864

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.66  E-value=0.00012  Score=56.34  Aligned_cols=99  Identities=20%  Similarity=0.148  Sum_probs=60.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCC---HHhh-hCCCCEEEEcC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ---LEDA-LTGMDIVIIPA  122 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d---~~ea-l~~aDiVIita  122 (289)
                      |||.|+|+ |.+|..++..|...|+  +++++|.++..  +.++.... ...+- +...+|   ++++ ++++|.++.+.
T Consensus         1 M~IvI~G~-G~~G~~la~~L~~~g~--~v~vid~d~~~--~~~~~~~~-~~~vi-~Gd~~~~~~l~~~~i~~a~~vv~~t   73 (132)
T d1lssa_           1 MYIIIAGI-GRVGYTLAKSLSEKGH--DIVLIDIDKDI--CKKASAEI-DALVI-NGDCTKIKTLEDAGIEDADMYIAVT   73 (132)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHH--HHHHHHHC-SSEEE-ESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--CcceecCChhh--hhhhhhhh-hhhhc-cCcccchhhhhhcChhhhhhhcccC
Confidence            79999999 9999999999999998  99999998721  11121110 11111 111112   2222 58999988863


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 022947          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (289)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd  167 (289)
                      ..         |  +.|+.    ++...++++++-++..+.||..
T Consensus        74 ~~---------d--~~N~~----~~~~~k~~~~~~iI~~~~~~~~  103 (132)
T d1lssa_          74 GK---------E--EVNLM----SSLLAKSYGINKTIARISEIEY  103 (132)
T ss_dssp             SC---------H--HHHHH----HHHHHHHTTCCCEEEECSSTTH
T ss_pred             Cc---------H--HHHHH----HHHHHHHcCCceEEEEecCHHH
Confidence            21         1  23542    2334456777777766677653

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=97.63  E-value=6e-05  Score=63.87  Aligned_cols=76  Identities=18%  Similarity=0.166  Sum_probs=49.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch---h-HHhhhhcccCCceEEEEe----cCCCHHhhhCCCCE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---G-VTADISHMDTNAVVRGFL----GQQQLEDALTGMDI  117 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~---g-~~~DL~~~~~~~~v~~~~----~t~d~~eal~~aDi  117 (289)
                      ++||.|+||+|++|++++..|+..|+  +|+.++++...   . ....+.... ...+..+.    ......++++++|.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~   79 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGH--PTFLLVRESTASSNSEKAQLLESFK-ASGANIVHGSIDDHASLVEAVKNVDV   79 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCCCCTTTTHHHHHHHHHHH-TTTCEEECCCTTCHHHHHHHHHTCSE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEECCCccccchhHHHHHHhhc-cCCcEEEEeecccchhhhhhhhhcee
Confidence            45999999999999999999999998  99999987621   1 111111111 11112111    11234567899999


Q ss_pred             EEEcCCC
Q 022947          118 VIIPAGV  124 (289)
Q Consensus       118 VIitag~  124 (289)
                      |+.+++.
T Consensus        80 vi~~~~~   86 (307)
T d1qyca_          80 VISTVGS   86 (307)
T ss_dssp             EEECCCG
T ss_pred             eeecccc
Confidence            9988753

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.61  E-value=0.0001  Score=56.52  Aligned_cols=69  Identities=13%  Similarity=0.132  Sum_probs=45.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEe--cCCCHHhh-hCCCCEEEEcC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL--GQQQLEDA-LTGMDIVIIPA  122 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~--~t~d~~ea-l~~aDiVIita  122 (289)
                      +|+.|+|+ |.+|+.++..|...|+  +++++|.++..  +.++.+..  ..+..-.  ....++++ +.+||.||++.
T Consensus         1 k~~iIiG~-G~~G~~la~~L~~~g~--~vvvid~d~~~--~~~~~~~~--~~~~~gd~~~~~~l~~a~i~~a~~vi~~~   72 (134)
T d2hmva1           1 KQFAVIGL-GRFGGSIVKELHRMGH--EVLAVDINEEK--VNAYASYA--THAVIANATEENELLSLGIRNFEYVIVAI   72 (134)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTC--CCEEEESCHHH--HHHTTTTC--SEEEECCTTCTTHHHHHTGGGCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--eEEEecCcHHH--HHHHHHhC--CcceeeecccchhhhccCCccccEEEEEc
Confidence            37899999 9999999999999998  99999998621  12222221  1111100  11123333 78999988875

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=97.60  E-value=2.3e-05  Score=62.10  Aligned_cols=65  Identities=15%  Similarity=0.119  Sum_probs=44.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      |||++||+ |.+|++++..|...+. .+|.++|+++..  ..++....   .+...   ++. ++++++|+||++.
T Consensus         1 MkI~fIG~-G~MG~ai~~~l~~~~~-~~i~v~~r~~~~--~~~l~~~~---~~~~~---~~~-~~v~~~Div~lav   65 (152)
T d1yqga2           1 MNVYFLGG-GNMAAAVAGGLVKQGG-YRIYIANRGAEK--RERLEKEL---GVETS---ATL-PELHSDDVLILAV   65 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCS-CEEEEECSSHHH--HHHHHHHT---CCEEE---SSC-CCCCTTSEEEECS
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCCC-CcEEEEeCChhH--HHHhhhhc---ccccc---ccc-ccccccceEEEec
Confidence            79999998 9999999987776652 399999987621  12222211   12221   233 5689999999985

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=8.3e-05  Score=63.41  Aligned_cols=155  Identities=16%  Similarity=0.186  Sum_probs=87.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEE-EEecCC---CHHhhhCCCCEEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVR-GFLGQQ---QLEDALTGMDIVI  119 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~-~~~~t~---d~~eal~~aDiVI  119 (289)
                      .+++.|+||++-+|..++..|+..|.  +|++.|+++.  +....++....   .+. .++..+   ..-+.+..-|++|
T Consensus         7 GK~~lITGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~~~~~~---~~~~Dv~d~~~v~~~~~~~g~iDilV   81 (244)
T d1pr9a_           7 GRRVLVTGAGKGIGRGTVQALHATGA--RVVAVSRTQADLDSLVRECPGIE---PVCVDLGDWEATERALGSVGPVDLLV   81 (244)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHSTTCE---EEECCTTCHHHHHHHHTTCCCCCEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHhcCCCe---EEEEeCCCHHHHHHHHHHhCCceEEE
Confidence            46899999999999999999999998  9999999862  22222222111   011 010001   1123456899999


Q ss_pred             EcCCCCCCCC---Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEE
Q 022947          120 IPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLL  189 (289)
Q Consensus       120 itag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kvi  189 (289)
                      ..||......   .+   ....+..|+.    ..+.+++.+.+....+.|++++.-...            .+.|..-.+
T Consensus        82 nnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~------------~~~~~~~~Y  149 (244)
T d1pr9a_          82 NNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQ------------RAVTNHSVY  149 (244)
T ss_dssp             ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGT------------SCCTTBHHH
T ss_pred             eccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeeccccccc------------ccccchhhh
Confidence            9998754321   12   2234455544    456666665555556777776543221            122222222


Q ss_pred             EeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          190 GVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       190 G~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                      +.+.-.-..|-+.+|.+++  +..|++-.+
T Consensus       150 ~asKaal~~lt~~lA~el~--~~gIrvN~I  177 (244)
T d1pr9a_         150 CSTKGALDMLTKVMALELG--PHKIRVNAV  177 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             hhhHHHHHHHHHHHHHHhC--CCcEEEEEE
Confidence            2322223346677888874  566766555

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.48  E-value=0.00023  Score=55.77  Aligned_cols=80  Identities=15%  Similarity=0.268  Sum_probs=55.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      +++||+|||+.|.+|.+++..|...|+  +|.++|++...                      ..++.+.++|+++.+.-.
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~G~--~V~~~d~~~~~----------------------~~~~~~~~~~~v~~~~~~   63 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRASGY--PISILDREDWA----------------------VAESILANADVVIVSVPI   63 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTC--CEEEECTTCGG----------------------GHHHHHTTCSEEEECSCG
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHHcCC--CcEeccccccc----------------------ccchhhhhccccccccch
Confidence            356999999449999999999999999  99999986420                      113567899999987521


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tN  164 (289)
                                      ..+.++...+.... ++++++-++.
T Consensus        64 ----------------~~~~~v~~~~~~~~~~~~iiiD~~S   88 (152)
T d2pv7a2          64 ----------------NLTLETIERLKPYLTENMLLADLTS   88 (152)
T ss_dssp             ----------------GGHHHHHHHHGGGCCTTSEEEECCS
T ss_pred             ----------------hhheeeeecccccccCCceEEEecc
Confidence                            12334445555554 5677665553

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.47  E-value=0.00014  Score=61.85  Aligned_cols=155  Identities=16%  Similarity=0.178  Sum_probs=85.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEE-EEecCCCHH---hhhCCCCEEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVR-GFLGQQQLE---DALTGMDIVI  119 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~-~~~~t~d~~---eal~~aDiVI  119 (289)
                      .+++.|+||++-+|..++..|+..|.  +|++.|+++.  .....++....   .+. ..+..++.+   +.+..-|++|
T Consensus         5 GK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~~---~~~~Dv~~~~~v~~~~~~~g~iDilV   79 (242)
T d1cyda_           5 GLRALVTGAGKGIGRDTVKALHASGA--KVVAVTRTNSDLVSLAKECPGIE---PVCVDLGDWDATEKALGGIGPVDLLV   79 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHSTTCE---EEECCTTCHHHHHHHHTTCCCCSEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhcCCCe---EEEEeCCCHHHHHHHHHHcCCCeEEE
Confidence            35889999999999999999999998  9999998762  11222222111   011 000001111   2246889999


Q ss_pred             EcCCCCCCCC---Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEE
Q 022947          120 IPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLL  189 (289)
Q Consensus       120 itag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kvi  189 (289)
                      ..||......   .+   ....+..|+.    ..+...+.+.+....+.+++++......            +.|..-.+
T Consensus        80 nnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~------------~~~~~~~Y  147 (242)
T d1cyda_          80 NNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHV------------TFPNLITY  147 (242)
T ss_dssp             ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS------------CCTTBHHH
T ss_pred             ECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccc------------cCCccccc
Confidence            9999754321   12   1223444544    4455666655555566777765433211            12221122


Q ss_pred             EeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          190 GVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       190 G~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                      +.+.-.-..|-+.+|.++  .+..|++-.+
T Consensus       148 ~asKaal~~lt~~lA~e~--~~~gIrvN~I  175 (242)
T d1cyda_         148 SSTKGAMTMLTKAMAMEL--GPHKIRVNSV  175 (242)
T ss_dssp             HHHHHHHHHHHHHHHHHH--GGGTEEEEEE
T ss_pred             cchHHHHHHHHHHHHHHh--CccCeecccC
Confidence            222222234567778877  4566666554

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=97.46  E-value=0.00064  Score=59.75  Aligned_cols=104  Identities=15%  Similarity=0.135  Sum_probs=64.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEec--CC---CHHhhhCCCCEEE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG--QQ---QLEDALTGMDIVI  119 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~--t~---d~~eal~~aDiVI  119 (289)
                      ++++|+|+||+|++|++++..|+..|+  +|+.+-++.......++...   ..+..+.+  ++   .+..+++++|.++
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~--~V~~l~R~~~~~~~~~~~~~---~~v~~~~gD~~d~~~~~~~a~~~~~~~~   76 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGH--HVRAQVHSLKGLIAEELQAI---PNVTLFQGPLLNNVPLMDTLFEGAHLAF   76 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCSCSHHHHHHHTS---TTEEEEESCCTTCHHHHHHHHTTCSEEE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCC--eEEEEECCcchhhhhhhccc---CCCEEEEeeCCCcHHHHHHHhcCCceEE
Confidence            356999999999999999999999998  88888766532222222221   12222211  11   1446789999988


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       120 itag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      +.....   .       ..|....+.+++...+.+-.-+++..|
T Consensus        77 ~~~~~~---~-------~~~~~~~~~~~~aa~~agv~~~v~~Ss  110 (350)
T d1xgka_          77 INTTSQ---A-------GDEIAIGKDLADAAKRAGTIQHYIYSS  110 (350)
T ss_dssp             ECCCST---T-------SCHHHHHHHHHHHHHHHSCCSEEEEEE
T ss_pred             eecccc---c-------chhhhhhhHHHHHHHHhCCCceEEEee
Confidence            764211   1       124555566777777776444555444

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.45  E-value=0.00066  Score=57.85  Aligned_cols=155  Identities=19%  Similarity=0.246  Sum_probs=87.7

Q ss_pred             CEE-EEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCceEEEEe-cCCC----------HHhhh
Q 022947           47 FKV-AVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ----------LEDAL  112 (289)
Q Consensus        47 ~KI-~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~~-~t~d----------~~eal  112 (289)
                      +|| .|+||++-+|..+|..|+..|.  .|++.|+++  .+....++.+..  .++..+. +-+|          ..+.+
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~i~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   76 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGF--AVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTL   76 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHT
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHh
Confidence            376 6779999999999999999998  899999987  222334444322  1222111 1111          12234


Q ss_pred             CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCC
Q 022947          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (289)
Q Consensus       113 ~~aDiVIitag~~~~~---g~~---r~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~  182 (289)
                      ...|++|..||.....   ..+   -...+..|+.    ..+..++.+.+....+.|++++......            +
T Consensus        77 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~------------~  144 (255)
T d1gega_          77 GGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHV------------G  144 (255)
T ss_dssp             TCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS------------C
T ss_pred             CCccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhcc------------c
Confidence            6899999999875322   112   1234555544    4456666677777778777766433210            1


Q ss_pred             CCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       183 ~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                      .|..-.++.+.-.-..|-+.+|.+++  +..|++-.+
T Consensus       145 ~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrVN~I  179 (255)
T d1gega_         145 NPELAVYSSSKFAVRGLTQTAARDLA--PLGITVNGY  179 (255)
T ss_dssp             CTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CcccccchhCHHHHHhhHHHHHHHhh--hhCcEEEEE
Confidence            11111112222122345677788874  555665544

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=97.42  E-value=0.00041  Score=58.90  Aligned_cols=106  Identities=10%  Similarity=0.058  Sum_probs=65.2

Q ss_pred             EEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCC---HHhhhCCCCEEEEcCCCC
Q 022947           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ---LEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d---~~eal~~aDiVIitag~~  125 (289)
                      |.|+||+||+|++++..|+++|. .+|+.+|.-........+.+... ..........+   ....+.++++|+++|+..
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~-~~V~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~aa~~   79 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTKFVNLVDLNI-ADYMDKEDFLIQIMAGEEFGDVEAIFHEGACS   79 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTC-CCEEEEECCSSGGGGHHHHTSCC-SEEEEHHHHHHHHHTTCCCSSCCEEEECCSCC
T ss_pred             EEEecCccHHHHHHHHHHHhCCC-CeEEEEECCCCcchhhcccccch-hhhccchHHHHHHhhhhcccchhhhhhhcccc
Confidence            78999999999999999999884 37888985332111122222111 11111000000   012357889999988766


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCC
Q 022947          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPK  156 (289)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~  156 (289)
                      .............|......+.+...+.+..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~  110 (307)
T d1eq2a_          80 STTEWDGKYMMDNNYQYSKELLHYCLEREIP  110 (307)
T ss_dssp             CTTCCCHHHHHHHTHHHHHHHHHHHHHHTCC
T ss_pred             ccccccccccccccccccccccccccccccc
Confidence            5555555556677788888888888777643

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.40  E-value=7.3e-05  Score=58.98  Aligned_cols=72  Identities=21%  Similarity=0.315  Sum_probs=47.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCC-CccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g-~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      ++|||+|+||+|+||.-+...|.+++ ...+|.++-.....|+.....    ...+....  .+ .+.+.++|++|++++
T Consensus         1 q~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~----~~~~~~~~--~~-~~~~~~~d~vf~a~p   73 (144)
T d2hjsa1           1 QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFA----ESSLRVGD--VD-SFDFSSVGLAFFAAA   73 (144)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEET----TEEEECEE--GG-GCCGGGCSEEEECSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeec----cccchhcc--ch-hhhhccceEEEecCC
Confidence            36899999999999999999887654 245888886655444432211    12222211  12 255789999999863

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.39  E-value=9.6e-05  Score=60.36  Aligned_cols=73  Identities=18%  Similarity=0.251  Sum_probs=45.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccC--CceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~--~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      |+||+|+||+|++|.-+...|...+.+ ||..+=-++..|+..+-.+...  ...+.    ..+.++..+++|+||.+.+
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~-ei~~l~s~~~aG~~i~~~~p~~~~~~~~~----~~~~~~~~~~~dvvf~a~p   75 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEA-KITYLSSRTYAGKKLEEIFPSTLENSILS----EFDPEKVSKNCDVLFTALP   75 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTE-EEEEEECSTTTTSBHHHHCGGGCCCCBCB----CCCHHHHHHHCSEEEECCS
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCc-eEEEeeccccCCCcccccCchhhcccccc----ccCHhHhccccceEEEccc
Confidence            679999999999999999999887765 6665533333333222111111  11111    1245555678999999853

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.00018  Score=61.24  Aligned_cols=155  Identities=16%  Similarity=0.150  Sum_probs=85.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEe-----cCCCHHhhhCCCCEEEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-----GQQQLEDALTGMDIVII  120 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~-----~t~d~~eal~~aDiVIi  120 (289)
                      .+++.|+||++.+|..++..|+..|.  +|++.|+++..  ..++.+.. ........     ..+...+.+...|++|.
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~--~Vi~~~r~~~~--l~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~id~lVn   80 (245)
T d2ag5a1           6 GKVIILTAAAQGIGQAAALAFAREGA--KVIATDINESK--LQELEKYP-GIQTRVLDVTKKKQIDQFANEVERLDVLFN   80 (245)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHH--HGGGGGST-TEEEEECCTTCHHHHHHHHHHCSCCSEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCHHH--HHHHHhcc-CCceeeeeccccccccccccccccceeEEe
Confidence            34688889999999999999999997  99999998621  11122211 01111100     00112344578999999


Q ss_pred             cCCCCCCCC---Cch---hhHHHhhH----HHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEE
Q 022947          121 PAGVPRKPG---MTR---DDLFNINA----GIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (289)
Q Consensus       121 tag~~~~~g---~~r---~d~~~~N~----~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG  190 (289)
                      ++|......   .+.   ...+..|+    ...+.+.+.+.+. +.+-+++++.....+.           +++..-.++
T Consensus        81 ~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~-~~g~Ii~isS~~~~~~-----------~~~~~~~Y~  148 (245)
T d2ag5a1          81 VAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQ-KSGNIINMSSVASSVK-----------GVVNRCVYS  148 (245)
T ss_dssp             CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCSBTTTB-----------CCTTBHHHH
T ss_pred             cccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccC-CCceeeeeechhhccC-----------CccchhHHH
Confidence            998754321   122   12334443    4555666666554 4566666665432211           222222223


Q ss_pred             eeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          191 VTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       191 ~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                      .+.-.-..+-+.+|.+++  +..|++-.+
T Consensus       149 ~sKaal~~l~r~lA~e~~--~~gIrvN~I  175 (245)
T d2ag5a1         149 TTKAAVIGLTKSVAADFI--QQGIRCNCV  175 (245)
T ss_dssp             HHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhh--hhCcEEEEE
Confidence            322223346677888874  556666554

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=97.30  E-value=0.0011  Score=56.46  Aligned_cols=115  Identities=14%  Similarity=0.115  Sum_probs=70.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC----------HHhhh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ----------LEDAL  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d----------~~eal  112 (289)
                      .+.+.|+||++-+|..++..|+..|.  .|++.|+++.  +....++...   .++..+. +-+|          ..+.+
T Consensus         6 gK~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (251)
T d1zk4a1           6 GKVAIITGGTLGIGLAIATKFVEEGA--KVMITGRHSDVGEKAAKSVGTP---DQIQFFQHDSSDEDGWTKLFDATEKAF   80 (251)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCC---CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            35788889999999999999999998  8999999762  2222233211   1222211 1111          12334


Q ss_pred             CCCCEEEEcCCCCCCC---CCch---hhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecCC
Q 022947          113 TGMDIVIIPAGVPRKP---GMTR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       113 ~~aDiVIitag~~~~~---g~~r---~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tNP  165 (289)
                      ...|++|..||.....   ..+.   .+.+..|+.    ..+..++.|++....+.|++++..
T Consensus        81 G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~  143 (251)
T d1zk4a1          81 GPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSI  143 (251)
T ss_dssp             SSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCG
T ss_pred             CCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeecc
Confidence            6789999999874322   1222   234455544    556666777666556677777643

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=97.27  E-value=0.0001  Score=60.31  Aligned_cols=77  Identities=16%  Similarity=0.201  Sum_probs=46.2

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcc-cCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-DTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~-~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      .++.||+|+||+|++|.-+..+|...+.+ ||..+--++..|+...-.+. ..........  ....+.++++|+||.+.
T Consensus         3 ~~kikVaIlGATGyvG~elirLL~~HP~~-ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dvvf~al   79 (183)
T d2cvoa1           3 GEEVRIAVLGASGYTGAEIVRLLANHPQF-RIKVMTADRKAGEQFGSVFPHLITQDLPNLV--AVKDADFSNVDAVFCCL   79 (183)
T ss_dssp             SSCEEEEEESCSSHHHHHHHHHHTTCSSE-EEEEEECSTTTTSCHHHHCGGGTTSCCCCCB--CGGGCCGGGCSEEEECC
T ss_pred             CCccEEEEECcccHHHHHHHHHHHhCCCc-eEEEEeccccCCCccccccccccccccccch--hhhhhhhcccceeeecc
Confidence            45679999999999999999999888755 67766544433332211111 1011111111  11235578999999985


Q ss_pred             C
Q 022947          123 G  123 (289)
Q Consensus       123 g  123 (289)
                      .
T Consensus        80 p   80 (183)
T d2cvoa1          80 P   80 (183)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.26  E-value=0.00052  Score=57.74  Aligned_cols=114  Identities=18%  Similarity=0.167  Sum_probs=68.2

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      .+.+++.|+||++-+|..++..|++.|.  +|++.|+++..  ..+..+....+.++.  .-+...+.+...|++|..||
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga--~V~~~~r~~~~--l~~~~~~~~~~Dv~~--~~~~~~~~~g~iD~lVnnAG   75 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGA--EVTICARNEEL--LKRSGHRYVVCDLRK--DLDLLFEKVKEVDILVLNAG   75 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHH--HHHTCSEEEECCTTT--CHHHHHHHSCCCSEEEECCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHH--HHhcCCcEEEcchHH--HHHHHHHHhCCCcEEEeccc
Confidence            3567899999999999999999999998  99999997511  111111000000000  00123466789999999999


Q ss_pred             CCCCCC---Cch---hhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 022947          124 VPRKPG---MTR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       124 ~~~~~g---~~r---~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      .+....   .+.   .+.+..|+.    ..+.+.+.+++.. .+.+++++.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~-~G~ii~i~S  125 (234)
T d1o5ia_          76 GPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKG-WGRIVAITS  125 (234)
T ss_dssp             CCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             ccCCcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccc-ccccccccc
Confidence            764321   122   223444543    5566666666543 455555543

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=97.25  E-value=0.002  Score=55.14  Aligned_cols=156  Identities=13%  Similarity=0.117  Sum_probs=88.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC---chhHHhhhhcccCCceEEEEe-cCCC---HH-------hh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFL-GQQQ---LE-------DA  111 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~---~~g~~~DL~~~~~~~~v~~~~-~t~d---~~-------ea  111 (289)
                      .+.+.|+||++-+|..++..|+..|.  +|++.|++.   .+....++....  .++..+. +-+|   .+       +.
T Consensus         7 gK~alITGas~GIG~aia~~la~~G~--~Vv~~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (261)
T d1geea_           7 GKVVVITGSSTGLGKSMAIRFATEKA--KVVVNYRSKEDEANSVLEEIKKVG--GEAIAVKGDVTVESDVINLVQSAIKE   82 (261)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            34788889999999999999999998  999999875   122233333321  1222211 1111   11       22


Q ss_pred             hCCCCEEEEcCCCCCCCC---Cch---hhHHHhh----HHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhC
Q 022947          112 LTGMDIVIIPAGVPRKPG---MTR---DDLFNIN----AGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (289)
Q Consensus       112 l~~aDiVIitag~~~~~g---~~r---~d~~~~N----~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~  181 (289)
                      +..-|++|..||......   .+.   .+.+..|    ....+..++.+.+....+.|+++|......            
T Consensus        83 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~------------  150 (261)
T d1geea_          83 FGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKI------------  150 (261)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS------------
T ss_pred             hCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhcc------------
Confidence            357899999998753221   122   2334555    345677777777766666666665433221            


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       182 ~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                      +.|..-.++.+.-.-..|-+.+|.+++  +..|++-++
T Consensus       151 ~~~~~~~Y~asKaal~~lt~~lA~e~~--~~gIrVN~I  186 (261)
T d1geea_         151 PWPLFVHYAASKGGMKLMTETLALEYA--PKGIRVNNI  186 (261)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             cCccccccccCCccchhhHHHHHHHhh--hhCcEEEEE
Confidence            122211222222223446677888874  556665554

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.25  E-value=0.00038  Score=56.20  Aligned_cols=80  Identities=19%  Similarity=0.238  Sum_probs=55.0

Q ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEc
Q 022947           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (289)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIit  121 (289)
                      +.++-||.|+|+ |.+|..-+..++..|-  +|..+|.+.. .....+....  ..... ......+++.+++||+||-+
T Consensus        29 gv~pa~V~ViGa-GvaG~~A~~~A~~lGA--~V~~~D~~~~~l~~l~~~~~~--~~~~~-~~~~~~l~~~~~~aDivI~a  102 (168)
T d1pjca1          29 GVKPGKVVILGG-GVVGTEAAKMAVGLGA--QVQIFDINVERLSYLETLFGS--RVELL-YSNSAEIETAVAEADLLIGA  102 (168)
T ss_dssp             TBCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG--GSEEE-ECCHHHHHHHHHTCSEEEEC
T ss_pred             CCCCcEEEEECC-ChHHHHHHHHHhhCCC--EEEEEeCcHHHHHHHHHhhcc--cceee-hhhhhhHHHhhccCcEEEEe
Confidence            466889999999 9999998888887775  9999999862 1111111111  11222 22234578889999999999


Q ss_pred             CCCCCCC
Q 022947          122 AGVPRKP  128 (289)
Q Consensus       122 ag~~~~~  128 (289)
                      +-.|.+.
T Consensus       103 alipG~~  109 (168)
T d1pjca1         103 VLVPGRR  109 (168)
T ss_dssp             CCCTTSS
T ss_pred             eecCCcc
Confidence            8777543

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.23  E-value=0.00017  Score=57.07  Aligned_cols=71  Identities=14%  Similarity=0.117  Sum_probs=46.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEe--cCCCHHhhhCCCCEEEEcC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL--GQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~--~t~d~~eal~~aDiVIita  122 (289)
                      +||.|+|| |.+|.++|..|...|+  +|+++|++..  .+.++.............  ......+.+...|+++.+.
T Consensus         3 K~IliiGa-G~~G~~~a~~L~~~g~--~V~v~dr~~~--~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~   75 (182)
T d1e5qa1           3 KSVLMLGS-GFVTRPTLDVLTDSGI--KVTVACRTLE--SAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLI   75 (182)
T ss_dssp             CEEEEECC-STTHHHHHHHHHTTTC--EEEEEESCHH--HHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECS
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECChH--HHHHHHhcccccccccccccchhhhHhhhhccceeEeec
Confidence            58999998 9999999999999998  9999999863  222333321111111100  1123446678999888763

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.22  E-value=0.00013  Score=57.71  Aligned_cols=34  Identities=24%  Similarity=0.357  Sum_probs=31.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      |||+|||++|.+|.++|..|+..|+  +|++.++++
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~--~V~l~~R~~   34 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGH--EIVVGSRRE   34 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            7999996669999999999999999  999999986

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.20  E-value=0.0011  Score=56.31  Aligned_cols=155  Identities=15%  Similarity=0.188  Sum_probs=85.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEE-EEecCC-------CHHhhhCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVR-GFLGQQ-------QLEDALTGM  115 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~-~~~~t~-------d~~eal~~a  115 (289)
                      .+.+.|+||++-+|..++..|+..|.  +|++.|+++.  +....++.....  .+. ..+..+       ...+.+...
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~Dv~~~~~v~~~~~~~~~~~g~i   81 (244)
T d1nffa_           6 GKVALVSGGARGMGASHVRAMVAEGA--KVVFGDILDEEGKAMAAELADAAR--YVHLDVTQPAQWKAAVDTAVTAFGGL   81 (244)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTGGGEE--EEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhCcce--EEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            45788889999999999999999998  9999999872  222333332110  000 000001       112334689


Q ss_pred             CEEEEcCCCCCCC---CCc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCC
Q 022947          116 DIVIIPAGVPRKP---GMT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (289)
Q Consensus       116 DiVIitag~~~~~---g~~---r~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~  185 (289)
                      |++|..||.....   ..+   ..+.+..|+.    ..+...+.+.+. +.+.||+++......            +.+.
T Consensus        82 dilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~Ii~isS~~~~~------------~~~~  148 (244)
T d1nffa_          82 HVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEA-GRGSIINISSIEGLA------------GTVA  148 (244)
T ss_dssp             CEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTS------------CCTT
T ss_pred             eEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhc-CcceEEecccccccc------------cccc
Confidence            9999999874322   122   2234555544    445555666554 457777776544221            1222


Q ss_pred             CcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          186 KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       186 ~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                      .-.++.+.-.-..|-+.+|++++  +..|++-.+
T Consensus       149 ~~~Y~asKaal~~ltk~lA~el~--~~gIrVN~I  180 (244)
T d1nffa_         149 CHGYTATKFAVRGLTKSTALELG--PSGIRVNSI  180 (244)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             ccchhhHHHHHHHHHHHHHHHhc--ccCEEEEEE
Confidence            22222222223346677788774  555655444

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=97.19  E-value=0.0016  Score=55.54  Aligned_cols=156  Identities=16%  Similarity=0.152  Sum_probs=85.1

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---H-------HhhhC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---L-------EDALT  113 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~-------~eal~  113 (289)
                      +.+.|+||++-+|..++..|+..|.  .|++.|+++.  +....++.......++..+. +-+|   .       .+.+.
T Consensus         5 K~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G   82 (258)
T d1iy8a_           5 RVVLITGGGSGLGRATAVRLAAEGA--KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG   82 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHhC
Confidence            4788889999999999999999997  9999999862  22222333221112222211 1112   1       22346


Q ss_pred             CCCEEEEcCCCCCCCC----Cch---hhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCC
Q 022947          114 GMDIVIIPAGVPRKPG----MTR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (289)
Q Consensus       114 ~aDiVIitag~~~~~g----~~r---~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~  182 (289)
                      ..|++|..||.....+    .+.   ...+..|+.    ..+.+.+.+++.. .+.|++++......            +
T Consensus        83 ~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Ii~isS~~~~~------------~  149 (258)
T d1iy8a_          83 RIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQG-SGMVVNTASVGGIR------------G  149 (258)
T ss_dssp             CCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGTS------------B
T ss_pred             CCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhc-CCCCcccccHhhcc------------C
Confidence            8999999999643221    222   234555544    4455555665543 55666665433211            1


Q ss_pred             CCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       183 ~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                      .|..-.++.+.-.-..|-+.+|.+++  +..|++-++
T Consensus       150 ~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~i  184 (258)
T d1iy8a_         150 IGNQSGYAAAKHGVVGLTRNSAVEYG--RYGIRINAI  184 (258)
T ss_dssp             CSSBHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHhC--ccCceEEEE
Confidence            22211222222222345677888874  556665544

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.16  E-value=0.00087  Score=57.14  Aligned_cols=153  Identities=16%  Similarity=0.171  Sum_probs=86.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCceEEEEe-cCCC---H-------Hhhh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ---L-------EDAL  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~~-~t~d---~-------~eal  112 (289)
                      .+++.|+||++-+|..++..|+..|.  +|++.|+++  .+....++...     +..+. +-+|   .       .+.+
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~-----~~~~~~Dvt~~~~v~~~~~~~~~~~   77 (256)
T d1k2wa_           5 GKTALITGSARGIGRAFAEAYVREGA--RVAIADINLEAARATAAEIGPA-----ACAIALDVTDQASIDRCVAELLDRW   77 (256)
T ss_dssp             TEEEEEETCSSHHHHHHHHHHHHTTE--EEEEEESCHHHHHHHHHHHCTT-----EEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCc-----eEEEEeeCCCHHHHHHHHHHHHHHh
Confidence            34788999999999999999999997  999999986  22223333211     11110 1111   1       1234


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCC
Q 022947          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~  182 (289)
                      ...|++|..||......   .+   ....+..|+.    ..+.+++.+.+....+.|+++|......            +
T Consensus        78 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~------------~  145 (256)
T d1k2wa_          78 GSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRR------------G  145 (256)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS------------C
T ss_pred             CCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhcc------------c
Confidence            58999999999753221   12   2234555643    4456666666665567777776433211            1


Q ss_pred             CCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       183 ~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                      .|..-.++.+.-.-..|-+.+|.+++  +..|++-.+
T Consensus       146 ~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~V  180 (256)
T d1k2wa_         146 EALVGVYCATKAAVISLTQSAGLNLI--RHGINVNAI  180 (256)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             cccccchhhhhhHHHHHHHHHHHHhc--ccCeEEEEE
Confidence            22211222222222346677888874  555655443

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.12  E-value=0.0005  Score=58.20  Aligned_cols=152  Identities=17%  Similarity=0.198  Sum_probs=84.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch-----hHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-----GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~-----g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIi  120 (289)
                      .+++.|+||++-+|..++..|++.|.  +|++.|+++..     ....|+.+...   +...  -....+.+..-|++|.
T Consensus         7 gK~~lITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~Dv~~~~~---v~~~--~~~~~~~~g~iDiLVn   79 (237)
T d1uzma1           7 SRSVLVTGGNRGIGLAIAQRLAADGH--KVAVTHRGSGAPKGLFGVEVDVTDSDA---VDRA--FTAVEEHQGPVEVLVS   79 (237)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSSCCCTTSEEEECCTTCHHH---HHHH--HHHHHHHHSSCSEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCcchhcCceEEEEecCCHHH---HHHH--HHHHHHhcCCceEEEe
Confidence            35899999999999999999999998  99999998721     12233333210   1100  0123345678999999


Q ss_pred             cCCCCCCC---CCc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEE
Q 022947          121 PAGVPRKP---GMT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (289)
Q Consensus       121 tag~~~~~---g~~---r~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG  190 (289)
                      .||.....   ..+   ..+.+..|+.    ..+.+++.+++.. .+.|++++.-....            +.+..-.++
T Consensus        80 nAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~g~Iv~isS~~~~~------------~~~~~~~Y~  146 (237)
T d1uzma1          80 NAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNK-FGRMIFIGSVSGLW------------GIGNQANYA  146 (237)
T ss_dssp             ECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCCCC-----------------CCHHHH
T ss_pred             eecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccC-CCceEEEcchhhcc------------CCcccHHHH
Confidence            99975321   122   2234555544    4556666666554 55666666443221            111111222


Q ss_pred             eeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          191 VTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       191 ~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                      .+.-.-..|-+.+|.++  .+..|++-.+
T Consensus       147 asKaal~~lt~~lA~e~--~~~gIrVN~I  173 (237)
T d1uzma1         147 ASKAGVIGMARSIAREL--SKANVTANVV  173 (237)
T ss_dssp             HHHHHHHHHHHHHHHHH--GGGTEEEEEE
T ss_pred             HHHHHHHHHHHHHHhhh--hcCCceeeee
Confidence            22212234567778887  3555665544

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=97.06  E-value=0.0037  Score=53.06  Aligned_cols=156  Identities=15%  Similarity=0.093  Sum_probs=85.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-c--hhHHhhhhcccCCceEEEEe----cCCCH-------Hhh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGVTADISHMDTNAVVRGFL----GQQQL-------EDA  111 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~--~g~~~DL~~~~~~~~v~~~~----~t~d~-------~ea  111 (289)
                      .+.+.|+||++-+|..+|..|+..|.  .|++.|+++ .  +....++.... ..++..+.    ..++.       .+.
T Consensus         4 gK~alITGas~GIG~aiA~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~   80 (260)
T d1x1ta1           4 GKVAVVTGSTSGIGLGIATALAAQGA--DIVLNGFGDAAEIEKVRAGLAAQH-GVKVLYDGADLSKGEAVRGLVDNAVRQ   80 (260)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEECCSCHHHHHHHHHHHHHHH-TSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHHHHhc-CCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            34678889999999999999999998  899999875 1  12222222211 11222111    11111       222


Q ss_pred             hCCCCEEEEcCCCCCCCC---Cc---hhhHHHhhH----HHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhC
Q 022947          112 LTGMDIVIIPAGVPRKPG---MT---RDDLFNINA----GIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (289)
Q Consensus       112 l~~aDiVIitag~~~~~g---~~---r~d~~~~N~----~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~  181 (289)
                      +..-|++|..||......   .+   -.+.+..|+    ...+...+.+++.. .+.|++++......            
T Consensus        81 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Iv~isS~~~~~------------  147 (260)
T d1x1ta1          81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQG-FGRIINIASAHGLV------------  147 (260)
T ss_dssp             HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS------------
T ss_pred             hCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcC-CceEeeccccccee------------
Confidence            457999999999754321   11   223445553    45566677776654 56777765443221            


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       182 ~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                      +.|..-.++.+.-.-..|-+.+|.+++  +..|++-.+
T Consensus       148 ~~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~I  183 (260)
T d1x1ta1         148 ASANKSAYVAAKHGVVGFTKVTALETA--GQGITANAI  183 (260)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHT--TTTEEEEEE
T ss_pred             ccCCcchhhhhhhhHHHhHHHHHHHhc--hhCcEEEEE
Confidence            122111222222223346677888875  555665544

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=97.06  E-value=0.0012  Score=54.39  Aligned_cols=93  Identities=22%  Similarity=0.306  Sum_probs=61.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      .++|+|||. |.+|+.++..+..-|.  +|..+|.........+..       +.   ...++++.++.||+|+++....
T Consensus        49 gktvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~~~~-------~~---~~~~l~~ll~~sD~i~~~~plt  115 (193)
T d1mx3a1          49 GETLGIIGL-GRVGQAVALRAKAFGF--NVLFYDPYLSDGVERALG-------LQ---RVSTLQDLLFHSDCVTLHCGLN  115 (193)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCTTHHHHHT-------CE---ECSSHHHHHHHCSEEEECCCCC
T ss_pred             CceEEEecc-ccccccceeeeecccc--ceeeccCcccccchhhhc-------cc---cccchhhccccCCEEEEeeccc
Confidence            569999998 9999999999988887  999999865322111111       11   1246788899999999986322


Q ss_pred             -CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCC
Q 022947          126 -RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       126 -~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNP  165 (289)
                       ...+.       -|.+       .+....|++++|+++=-
T Consensus       116 ~~T~~l-------i~~~-------~l~~mk~~a~lIN~sRG  142 (193)
T d1mx3a1         116 EHNHHL-------INDF-------TVKQMRQGAFLVNTARG  142 (193)
T ss_dssp             TTCTTS-------BSHH-------HHTTSCTTEEEEECSCT
T ss_pred             ccchhh-------hhHH-------HHhccCCCCeEEecCCc
Confidence             11121       1222       23445689999998643

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=97.06  E-value=0.0017  Score=55.46  Aligned_cols=156  Identities=15%  Similarity=0.169  Sum_probs=88.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCceEEEEe-cCCC----------HHhhh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ----------LEDAL  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~~-~t~d----------~~eal  112 (289)
                      .+.+.|+||++-+|..++..|+..|.  .|++.|+++  .+....++....  .++..+. +-+|          ..+.+
T Consensus         5 gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (260)
T d1zema1           5 GKVCLVTGAGGNIGLATALRLAEEGT--AIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRDF   80 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            45788999999999999999999997  899999986  222233343321  1222221 1111          12334


Q ss_pred             CCCCEEEEcCCCCCCCC----Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhC
Q 022947          113 TGMDIVIIPAGVPRKPG----MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g----~~---r~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~  181 (289)
                      ...|++|..+|.....+    .+   ....+..|+.    ..+...+.+.+. ..+.||+++.....            .
T Consensus        81 g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~-~~G~II~isS~~~~------------~  147 (260)
T d1zema1          81 GKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQ-NYGRIVNTASMAGV------------K  147 (260)
T ss_dssp             SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHHHH------------S
T ss_pred             CCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhh-cCCCCCeeechhhc------------c
Confidence            68999999998643221    12   2234455544    455566665554 46777776542211            1


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEEc
Q 022947          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (289)
Q Consensus       182 ~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~G  220 (289)
                      +.|..-.++.+.-.-..|-+.+|.+++  +..|++-++-
T Consensus       148 ~~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrVN~I~  184 (260)
T d1zema1         148 GPPNMAAYGTSKGAIIALTETAALDLA--PYNIRVNAIS  184 (260)
T ss_dssp             CCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHhh--hhCCEEEEec
Confidence            232222233332223346677888874  5666655543

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=97.06  E-value=0.0013  Score=55.94  Aligned_cols=158  Identities=15%  Similarity=0.123  Sum_probs=85.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhH-HhhhhcccCCceEEEEe----cCCCHHhhhCCCCEEE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TADISHMDTNAVVRGFL----GQQQLEDALTGMDIVI  119 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~-~~DL~~~~~~~~v~~~~----~t~d~~eal~~aDiVI  119 (289)
                      +.+.+.|+||++-+|..++..|++.|.  .|++.|+++...+ +.++.......++....    ......+.+..-|++|
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLV   81 (248)
T d2d1ya1           4 AGKGVLVTGGARGIGRAIAQAFAREGA--LVALCDLRPEGKEVAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVDVLV   81 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhcCCCCeEE
Confidence            345789999999999999999999998  9999999872211 11111100001110000    0011233457899999


Q ss_pred             EcCCCCCCC---CCch---hhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEE
Q 022947          120 IPAGVPRKP---GMTR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLL  189 (289)
Q Consensus       120 itag~~~~~---g~~r---~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kvi  189 (289)
                      ..||.....   ..+.   ...+..|+.    ..+...+.|++. ..+.||+++......            +.|..-.+
T Consensus        82 nnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~-~~G~Ii~isS~~~~~------------~~~~~~~Y  148 (248)
T d2d1ya1          82 NNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKV-GGGAIVNVASVQGLF------------AEQENAAY  148 (248)
T ss_dssp             ECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT-TCEEEEEECCGGGTS------------BCTTBHHH
T ss_pred             EeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccc-ccccccccccccccc------------cccccchh
Confidence            999874321   1121   224455544    556666666554 356777776443221            12221122


Q ss_pred             EeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          190 GVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       190 G~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                      +.+.-.-..|-+.+|++++  +..|++-.+
T Consensus       149 ~asKaal~~ltk~lA~el~--~~gIrVN~I  176 (248)
T d2d1ya1         149 NASKGGLVNLTRSLALDLA--PLRIRVNAV  176 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhh--hhCcEEEEE
Confidence            2222222346677888874  555665544

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=97.06  E-value=0.0021  Score=54.53  Aligned_cols=82  Identities=13%  Similarity=0.063  Sum_probs=53.3

Q ss_pred             CCCCCEEEEEcCCC--ccHHHHHHHHHhCCCccEEEEEeCCC-chhHHhhhhcccCCceEEEEecC---------CCHHh
Q 022947           43 GSPGFKVAVLGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQ---------QQLED  110 (289)
Q Consensus        43 ~~~~~KI~IIGaaG--~VGs~la~~L~~~g~~~eI~LvD~~~-~~g~~~DL~~~~~~~~v~~~~~t---------~d~~e  110 (289)
                      +-+.+++.|+||+|  -+|..+|..|+..|.  +|++.|+++ ....+.++........+.....+         ....+
T Consensus         2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga--~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   79 (274)
T d2pd4a1           2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGA--TLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKK   79 (274)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHH
Confidence            34567899999877  599999999999998  999999987 33334444433211111111111         12234


Q ss_pred             hhCCCCEEEEcCCCCC
Q 022947          111 ALTGMDIVIIPAGVPR  126 (289)
Q Consensus       111 al~~aDiVIitag~~~  126 (289)
                      .+...|++|.++|...
T Consensus        80 ~~g~id~lV~nag~~~   95 (274)
T d2pd4a1          80 DLGSLDFIVHSVAFAP   95 (274)
T ss_dssp             HTSCEEEEEECCCCCC
T ss_pred             HcCCCCeEEeeccccc
Confidence            4578999999988653

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=0.00056  Score=49.33  Aligned_cols=72  Identities=17%  Similarity=0.272  Sum_probs=49.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      .+||+|+|. |..|.++|..|...|.  +|.++|.+.......++.+   ...+..  +..+ .+.+.+.|+||++-|+|
T Consensus         5 ~K~v~ViGl-G~sG~s~a~~L~~~g~--~v~~~D~~~~~~~~~~~~~---~~~~~~--~~~~-~~~~~~~d~vi~SPGi~   75 (93)
T d2jfga1           5 GKNVVIIGL-GLTGLSCVDFFLARGV--TPRVMDTRMTPPGLDKLPE---AVERHT--GSLN-DEWLMAADLIVASPGIA   75 (93)
T ss_dssp             TCCEEEECC-SHHHHHHHHHHHHTTC--CCEEEESSSSCTTGGGSCT---TSCEEE--SBCC-HHHHHHCSEEEECTTSC
T ss_pred             CCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEeeCCcCchhHHHHhh---ccceee--cccc-hhhhccCCEEEECCCCC
Confidence            358999999 9999999999999997  8999998662111122222   112221  1112 46689999999998876


Q ss_pred             C
Q 022947          126 R  126 (289)
Q Consensus       126 ~  126 (289)
                      .
T Consensus        76 ~   76 (93)
T d2jfga1          76 L   76 (93)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=0.0047  Score=52.42  Aligned_cols=155  Identities=15%  Similarity=0.147  Sum_probs=86.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCCH----------Hhhh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL----------EDAL  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~----------~eal  112 (289)
                      .+.+.|+||++-+|..+|..|+..|.  .|++.|+++.  +..+.++....  .++..+. +-++.          .+.+
T Consensus        11 gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~l~~~g--~~~~~~~~Dvs~~~~~~~~~~~~~~~~   86 (255)
T d1fmca_          11 GKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISKL   86 (255)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45788999999999999999999997  9999998762  22233343321  1222111 11121          2334


Q ss_pred             CCCCEEEEcCCCCCCC--CCch---hhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCC
Q 022947          113 TGMDIVIIPAGVPRKP--GMTR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (289)
Q Consensus       113 ~~aDiVIitag~~~~~--g~~r---~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~  183 (289)
                      ..-|++|..||.....  ..+.   ...+..|+.    ..+.+++.+++.. .+.|++++.-...            .+.
T Consensus        87 g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~g~Ii~isS~~~~------------~~~  153 (255)
T d1fmca_          87 GKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG-GGVILTITSMAAE------------NKN  153 (255)
T ss_dssp             SSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGT------------CCC
T ss_pred             CCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhcccc-ccccccccccchh------------ccc
Confidence            6899999999875332  2222   223445543    4566667776664 4455555432211            112


Q ss_pred             CCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       184 ~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                      |..-.++.+.-.-..|-+.+|.+++  +..|++-.+
T Consensus       154 ~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~I  187 (255)
T d1fmca_         154 INMTSYASSKAAASHLVRNMAFDLG--EKNIRVNGI  187 (255)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHH--TTTEEEEEE
T ss_pred             cccccchhHHHHHHHHHHHHHHHhC--ccCeEEEEe
Confidence            2222222222223346677888874  455665544

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=97.02  E-value=0.00069  Score=57.44  Aligned_cols=155  Identities=16%  Similarity=0.200  Sum_probs=86.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEE-EEecCC-------CHHhhhCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVR-GFLGQQ-------QLEDALTGM  115 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~-~~~~t~-------d~~eal~~a  115 (289)
                      .+.+.|+||++-+|..++..|+..|.  .|++.|+++.  +..+.++....  ..+. ..+..+       ...+.+..-
T Consensus         4 gK~alITGas~GIG~a~a~~l~~~G~--~Vv~~~r~~~~l~~~~~~~~~~~--~~~~~Dv~~~~~v~~~~~~~~~~~g~i   79 (243)
T d1q7ba_           4 GKIALVTGASRGIGRAIAETLAARGA--KVIGTATSENGAQAISDYLGANG--KGLMLNVTDPASIESVLEKIRAEFGEV   79 (243)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHGGGE--EEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhCCCC--cEEEEEecCHHHhhhhhhhhhcccCCc
Confidence            34677889999999999999999998  8999999862  22222222110  0000 000001       112234589


Q ss_pred             CEEEEcCCCCCCCC---Cc---hhhHHHhhH----HHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCC
Q 022947          116 DIVIIPAGVPRKPG---MT---RDDLFNINA----GIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (289)
Q Consensus       116 DiVIitag~~~~~g---~~---r~d~~~~N~----~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~  185 (289)
                      |++|..||......   .+   -...+..|+    ...+.+.+.|.+.. .+.|+++|....          . . +.|.
T Consensus        80 DilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~II~isS~~~----------~-~-~~~~  146 (243)
T d1q7ba_          80 DILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKR-HGRIITIGSVVG----------T-M-GNGG  146 (243)
T ss_dssp             SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHHH----------H-H-CCTT
T ss_pred             ceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcC-CCEeeeecchhh----------c-C-CCCC
Confidence            99999998754321   11   223345554    45566666666543 577777664221          1 1 2332


Q ss_pred             CcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          186 KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       186 ~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                      .-.++.+.-.-..|-+.+|.+++  +..|++-.+
T Consensus       147 ~~~Y~asKaal~~lt~~lA~ela--~~gIrVN~I  178 (243)
T d1q7ba_         147 QANYAAAKAGLIGFSKSLAREVA--SRGITVNVV  178 (243)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhC--ccCeEEEEE
Confidence            22333333223456777888874  555665544

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.02  E-value=0.00047  Score=55.85  Aligned_cols=73  Identities=16%  Similarity=0.284  Sum_probs=43.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC---chhHHhhhhccc----CCceEEEEecCCCHHhhhCCCCEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMD----TNAVVRGFLGQQQLEDALTGMDIV  118 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~---~~g~~~DL~~~~----~~~~v~~~~~t~d~~eal~~aDiV  118 (289)
                      |+||+|+||+|++|.-+...|...+.+ ||.-+-...   ..|+...-.+..    ........   .+......++|++
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~-ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~dvv   76 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHM-TITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPM---SDVRDFSADVDVV   76 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTE-EEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEE---SCGGGTCTTCCEE
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCC-ceEeeEeecccccccccccccccccccccccccccc---hhhhhhhccccee
Confidence            679999999999999999999988754 554432211   223322111111    11122222   2333556899999


Q ss_pred             EEcC
Q 022947          119 IIPA  122 (289)
Q Consensus       119 Iita  122 (289)
                      |++.
T Consensus        77 f~al   80 (179)
T d2g17a1          77 FLAT   80 (179)
T ss_dssp             EECS
T ss_pred             eccc
Confidence            9985

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.00  E-value=0.00034  Score=58.96  Aligned_cols=158  Identities=14%  Similarity=0.062  Sum_probs=82.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch-h---HHhhhhcccCCceEEEEecCCCHHhhhC--CCCEEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-G---VTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVI  119 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~-g---~~~DL~~~~~~~~v~~~~~t~d~~eal~--~aDiVI  119 (289)
                      .++|.|+||+|-+|..++..|++.|.  +|+++|+++.. .   ...++..... ......  .....+.+.  ..|++|
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~iD~lI   76 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNW--WVASIDVVENEEASASVIVKMTDSFT-EQADQV--TAEVGKLLGDQKVDAIL   76 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSCCTTSSEEEECCCCSCHH-HHHHHH--HHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCccccccccceeecccCcH-HHHHHH--HHHHHHHhCCCCceEEE
Confidence            46899999999999999999999998  99999987621 1   0010000000 000000  001112222  479999


Q ss_pred             EcCCCCC--CC-CCc----hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022947          120 IPAGVPR--KP-GMT----RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (289)
Q Consensus       120 itag~~~--~~-g~~----r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~  191 (289)
                      ..||...  .+ ...    ....+..|+......++.+.++- ..+.|++++.-...            .+.|..-.++.
T Consensus        77 nnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~------------~~~~~~~~Y~a  144 (236)
T d1dhra_          77 CVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAAL------------DGTPGMIGYGM  144 (236)
T ss_dssp             ECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG------------SCCTTBHHHHH
T ss_pred             ECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHc------------CCccCCcccHH
Confidence            9998522  11 111    12245666655555555555443 46777776542211            12222112222


Q ss_pred             eeccHHHHHHHHHHHcCCCCcceeeeEEc
Q 022947          192 TMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (289)
Q Consensus       192 t~lds~R~~~~lA~~l~v~~~~V~~~V~G  220 (289)
                      +.-.-..|-+.+|.+++-.+..|++..+.
T Consensus       145 sKaal~~lt~~la~El~~~~~gI~vn~v~  173 (236)
T d1dhra_         145 AKGAVHQLCQSLAGKNSGMPSGAAAIAVL  173 (236)
T ss_dssp             HHHHHHHHHHHHTSTTSSCCTTCEEEEEE
T ss_pred             HHHHHHHHHHHHHHHhccCCCcEEEEEEE
Confidence            22222335566666665445667666553

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.00  E-value=0.0015  Score=55.31  Aligned_cols=156  Identities=19%  Similarity=0.122  Sum_probs=82.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe----cCCCHHhhhCCCCEEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL----GQQQLEDALTGMDIVI  119 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~----~t~d~~eal~~aDiVI  119 (289)
                      .+++.|+||++-+|..++..|+..|.  +|++.|+++.  +....++.......++....    .-....+.+..-|++|
T Consensus         5 gK~~lITGas~GIG~aia~~l~~~G~--~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilV   82 (242)
T d1ulsa_           5 DKAVLITGAAHGIGRATLELFAKEGA--RLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGVV   82 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHhcCCceEEE
Confidence            35788999999999999999999998  8999999862  11111111100000100000    0001123346899999


Q ss_pred             EcCCCCCCCC---Cc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEE
Q 022947          120 IPAGVPRKPG---MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLL  189 (289)
Q Consensus       120 itag~~~~~g---~~---r~d~~~~N~~i~----~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kvi  189 (289)
                      ..||......   .+   -...+..|+...    +.+.+.+++. ..+.+++.+. ...            .+.|..-.+
T Consensus        83 nnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~~~i~~~ss-~~~------------~~~~~~~~Y  148 (242)
T d1ulsa_          83 HYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREK-NPGSIVLTAS-RVY------------LGNLGQANY  148 (242)
T ss_dssp             ECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CCEEEEEECC-GGG------------GCCTTCHHH
T ss_pred             ECCcccccCchhhCcchhhhccccccchhhhhhhhhcccccccc-ccceeeeecc-ccc------------cCCCCCcch
Confidence            9999754321   22   223455565544    4455555443 3445544432 111            123332233


Q ss_pred             EeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          190 GVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       190 G~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                      +.+.-.-..|-+.+|.+++  +..|++-.+
T Consensus       149 ~asKaal~~ltk~lA~ela--~~gIrVN~I  176 (242)
T d1ulsa_         149 AASMAGVVGLTRTLALELG--RWGIRVNTL  176 (242)
T ss_dssp             HHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHh--hhCcEEEEE
Confidence            3332222345677788873  556666554

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.99  E-value=0.0075  Score=51.31  Aligned_cols=157  Identities=18%  Similarity=0.115  Sum_probs=86.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc---hhHHhhhhcccCCceEEEE-ecCCC----------HHhh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGF-LGQQQ----------LEDA  111 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~---~g~~~DL~~~~~~~~v~~~-~~t~d----------~~ea  111 (289)
                      .+++.|+||++-+|..++..|+..|.  +|++.|++..   +..+.++....  .++..+ .+..|          ..+.
T Consensus        18 gK~~lITGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~~~   93 (272)
T d1g0oa_          18 GKVALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAVKI   93 (272)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCchHHHHHHHHHHHhhC--CceeeEeCCCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999999998  8999998762   22222232221  122211 11112          2234


Q ss_pred             hCCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCC
Q 022947          112 LTGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (289)
Q Consensus       112 l~~aDiVIitag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~~~  184 (289)
                      +..-|++|..+|......   .+   ..+.+..|+.....+.+.+..+- .++.+++++.-....           ...+
T Consensus        94 ~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~~~-----------~~~~  162 (272)
T d1g0oa_          94 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQA-----------KAVP  162 (272)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTC-----------SSCS
T ss_pred             hCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccccccccc-----------cccc
Confidence            568899999988653321   11   23345666666666666665543 455555554322111           0111


Q ss_pred             CCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       185 ~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                      ..-.++.+.-.-..|-+.+|.+++  +..|++-.+
T Consensus       163 ~~~~Y~asKaal~~ltk~lA~e~~--~~gIrVN~I  195 (272)
T d1g0oa_         163 KHAVYSGSKGAIETFARCMAIDMA--DKKITVNVV  195 (272)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             chhhHHHHHHHHHHHHHHHHHHhc--hhCeEEEEE
Confidence            111223332222346677888875  455554433

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.97  E-value=0.0047  Score=52.27  Aligned_cols=114  Identities=12%  Similarity=0.145  Sum_probs=67.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCceEEEEe-cCCC---H-------Hhhh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ---L-------EDAL  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~~-~t~d---~-------~eal  112 (289)
                      .+.+.|+||++-+|..+|..|++.|.  .|++.|+++  ....+.++.... ..++..+. +-++   .       .+.+
T Consensus         5 gK~~lITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (251)
T d1vl8a_           5 GRVALVTGGSRGLGFGIAQGLAEAGC--SVVVASRNLEEASEAAQKLTEKY-GVETMAFRCDVSNYEEVKKLLEAVKEKF   81 (251)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHHh-CCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45788999999999999999999998  899999986  222233343221 11222111 1111   1       1234


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEec
Q 022947          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      ...|++|..||......   .+   -...+..|+.    ..+.+++.|++.. .+.+|+++
T Consensus        82 g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~Ii~i~  141 (251)
T d1vl8a_          82 GKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESD-NPSIINIG  141 (251)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCS-SCEEEEEC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccc-cccccccc
Confidence            58999999999753321   12   1234455544    4555666665443 44555553

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00067  Score=57.86  Aligned_cols=156  Identities=18%  Similarity=0.103  Sum_probs=85.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccC-CceEEEEe----cCCCHHhhhCCCCEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT-NAVVRGFL----GQQQLEDALTGMDIV  118 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~-~~~v~~~~----~t~d~~eal~~aDiV  118 (289)
                      .+.+.|+||++-+|..++..|+..|.  +|++.|+++.  +....++..... ..++....    ......+.+...|++
T Consensus         6 GK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDil   83 (250)
T d1ydea1           6 GKVVVVTGGGRGIGAGIVRAFVNSGA--RVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCV   83 (250)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhcCCCeEEEccCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            45788999999999999999999998  9999999862  222222222110 00000000    000122334679999


Q ss_pred             EEcCCCCCCCC----Cch---hhHHHhhH----HHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCc
Q 022947          119 IIPAGVPRKPG----MTR---DDLFNINA----GIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR  187 (289)
Q Consensus       119 Iitag~~~~~g----~~r---~d~~~~N~----~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~k  187 (289)
                      |..||.....+    .+.   .+.+..|+    ...+...+.|++.  .+.|++++.....           . +.|..-
T Consensus        84 VnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~--~G~Ii~isS~~~~-----------~-~~~~~~  149 (250)
T d1ydea1          84 VNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS--QGNVINISSLVGA-----------I-GQAQAV  149 (250)
T ss_dssp             EECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECCHHHH-----------H-CCTTCH
T ss_pred             EecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhC--CCCCccccccccc-----------c-cccCcc
Confidence            99998643222    121   23344553    4566677777654  3667776533211           1 233222


Q ss_pred             EEEeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          188 LLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       188 viG~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                      .++.+.-.-..|-+.+|++++  +..|++-.+
T Consensus       150 ~Y~asKaal~~lt~~lA~e~a--~~gIrVN~I  179 (250)
T d1ydea1         150 PYVATKGAVTAMTKALALDES--PYGVRVNCI  179 (250)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             hhHHHHhhHHHHHHHHHHHhc--ccCeEEEEE
Confidence            333332223346677888874  555665544

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.96  E-value=0.00034  Score=58.80  Aligned_cols=157  Identities=15%  Similarity=0.068  Sum_probs=80.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch-hHHhhhhcccC-Cc-eEEEEecCCCHHhh--hCCCCEEEEc
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDT-NA-VVRGFLGQQQLEDA--LTGMDIVIIP  121 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~-g~~~DL~~~~~-~~-~v~~~~~t~d~~ea--l~~aDiVIit  121 (289)
                      .||.|+||+|-+|..++..|++.|.  +|+++|+++.. ....-...... .. ....  ......+.  ...-|++|..
T Consensus         3 gkVlITGas~GIG~aia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~iD~linn   78 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKKNGY--TVLNIDLSANDQADSNILVDGNKNWTEQEQS--ILEQTASSLQGSQVDGVFCV   78 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCCTTSSEEEECCTTSCHHHHHHH--HHHHHHHHHTTCCEEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCchhcccccceeccccCchhHHHH--HHHHHHHHhcCCCeeEEEEC
Confidence            3899999999999999999999997  89999997621 00000000000 00 0000  00011122  2447999999


Q ss_pred             CCCCCC--C-CCc----hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeee
Q 022947          122 AGVPRK--P-GMT----RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTM  193 (289)
Q Consensus       122 ag~~~~--~-g~~----r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t~  193 (289)
                      ||....  + .++    ....+..|+.....+++....+- +.+.|++++.....            .+.|..-.++.+.
T Consensus        79 AG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~------------~~~~~~~~Y~asK  146 (235)
T d1ooea_          79 AGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAM------------GPTPSMIGYGMAK  146 (235)
T ss_dssp             CCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG------------SCCTTBHHHHHHH
T ss_pred             CcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhc------------CCcccccchHHHH
Confidence            986321  1 111    12245666655544444444432 45777776532211            1122111112222


Q ss_pred             ccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          194 LDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       194 lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                      -.-..|-+.+|.+++-.+..|++..+
T Consensus       147 aal~~l~~~la~e~~~~~~~i~v~~i  172 (235)
T d1ooea_         147 AAVHHLTSSLAAKDSGLPDNSAVLTI  172 (235)
T ss_dssp             HHHHHHHHHHHSTTSSCCTTCEEEEE
T ss_pred             HHHHHHHHHHHHHhccCCCceEEEEE
Confidence            22334556677776644556665543

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=96.95  E-value=0.0022  Score=54.61  Aligned_cols=112  Identities=18%  Similarity=0.171  Sum_probs=68.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC----------HHhhh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ----------LEDAL  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d----------~~eal  112 (289)
                      .+.+.|+||++-+|..++..|+..|.  +|++.|+++.  .....++...     +..+. +-++          ..+.+
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~Dv~~~~~v~~~~~~~~~~~   77 (254)
T d1hdca_           5 GKTVIITGGARGLGAEAARQAVAAGA--RVVLADVLDEEGAATARELGDA-----ARYQHLDVTIEEDWQRVVAYAREEF   77 (254)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTGGG-----EEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCc-----eEEEEcccCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999998  8999999762  2222333211     11110 0011          12334


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecCC
Q 022947          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tNP  165 (289)
                      ...|++|..||......   .+   ..+.+..|+.    ..+.+.+.+++. ..+.||+++.-
T Consensus        78 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~-~~G~II~isS~  139 (254)
T d1hdca_          78 GSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDA-GGGSIVNISSA  139 (254)
T ss_dssp             SCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG
T ss_pred             CCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhc-CCCeecccccc
Confidence            68999999998753221   11   2234555544    456666666654 35677777643

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=96.95  E-value=0.0077  Score=50.73  Aligned_cols=114  Identities=20%  Similarity=0.266  Sum_probs=68.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEe-cCCC---H-------HhhhCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQ---L-------EDALTG  114 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~-~t~d---~-------~eal~~  114 (289)
                      .+.+.|+||++-+|..++..|+..|.  .|++.|+++.......+....  .++..+. +-+|   .       .+.+..
T Consensus         5 gKvalVTGas~GIG~aia~~la~~Ga--~V~~~~~~~~~~~~~~~~~~g--~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~   80 (247)
T d2ew8a1           5 DKLAVITGGANGIGRAIAERFAVEGA--DIAIADLVPAPEAEAAIRNLG--RRVLTVKCDVSQPGDVEAFGKQVISTFGR   80 (247)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHHHcC--CcEEEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence            34778889999999999999999998  899999987322112222211  1222111 1111   1       123468


Q ss_pred             CCEEEEcCCCCCCCC---Cc---hhhHHHhhH----HHHHHHHHHHHHhCCCcEEEEecC
Q 022947          115 MDIVIIPAGVPRKPG---MT---RDDLFNINA----GIVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       115 aDiVIitag~~~~~g---~~---r~d~~~~N~----~i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      .|++|..||......   .+   -...+..|+    ...+.+.+.+++.. .+.|+++|.
T Consensus        81 iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~Iv~isS  139 (247)
T d2ew8a1          81 CDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG-WGRIINLTS  139 (247)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcC-CCCcccccc
Confidence            999999999753221   12   223444554    45566666776654 566666653

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.95  E-value=0.0038  Score=52.91  Aligned_cols=154  Identities=16%  Similarity=0.127  Sum_probs=84.7

Q ss_pred             EE-EEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCceEEEEe-cCCC----------HHhhhC
Q 022947           48 KV-AVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ----------LEDALT  113 (289)
Q Consensus        48 KI-~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~~-~t~d----------~~eal~  113 (289)
                      || .|+||++-+|..+|..|++.|.  .|++.|+++  .+....++....  .++..+. +-+|          ..+.+.
T Consensus         3 KValITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvs~~~~v~~~~~~~~~~~g   78 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGL--RVFVCARGEEGLRTTLKELREAG--VEADGRTCDVRSVPEIEALVAAVVERYG   78 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            55 6779999999999999999998  899999986  233334444322  1222211 1111          122346


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHh-----CCCcEEEEecCCCcccHHHHHHHHHHhCC
Q 022947          114 GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC-----CPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (289)
Q Consensus       114 ~aDiVIitag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~-----~p~aiviv~tNPvd~~t~~~~~~~~~~~~  182 (289)
                      .-|++|..||......   .+   -.+.+..|+.....+++.+.++     ...+.+++++.-....            +
T Consensus        79 ~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~~------------~  146 (257)
T d2rhca1          79 PVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQ------------G  146 (257)
T ss_dssp             SCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGTS------------C
T ss_pred             CCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCccccccccccccc------------c
Confidence            7999999999754321   12   2345666766665555554332     2345566654322111            1


Q ss_pred             CCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       183 ~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                      .|..-.++.+.-.-..|-+.+|.+++  +..|++-.+
T Consensus       147 ~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrVN~I  181 (257)
T d2rhca1         147 VVHAAPYSASKHGVVGFTKALGLELA--RTGITVNAV  181 (257)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHTT--TSEEEEEEE
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhh--hhCcEEEEE
Confidence            22211222222122346677888874  556665544

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.90  E-value=0.006  Score=52.22  Aligned_cols=115  Identities=18%  Similarity=0.252  Sum_probs=68.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccC-CceEEEEe-cCCC---H-------Hhh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFL-GQQQ---L-------EDA  111 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~-~~~v~~~~-~t~d---~-------~ea  111 (289)
                      .+.+.|+||++-+|..+|..|+..|.  .|++.|+++  .+..+.++..... ..++..+. +-+|   .       .+.
T Consensus         4 gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (274)
T d1xhla_           4 GKSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK   81 (274)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence            45788999999999999999999997  999999986  2333334443221 11232221 1111   1       122


Q ss_pred             hCCCCEEEEcCCCCCCCC-----Cch---hhHHHhhHH----HHHHHHHHHHHhCCCcEEEEec
Q 022947          112 LTGMDIVIIPAGVPRKPG-----MTR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       112 l~~aDiVIitag~~~~~g-----~~r---~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      +...|++|..||.....+     ++.   ...+..|+.    ..+...+.+++ .+.+.++++|
T Consensus        82 ~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~-~~~g~ii~~s  144 (274)
T d1xhla_          82 FGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIK-TKGEIVNVSS  144 (274)
T ss_dssp             HSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TTCEEEEECC
T ss_pred             cCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccc-cccccccchh
Confidence            357899999998643221     121   223444544    45566666654 3466666654

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=96.90  E-value=0.0056  Score=51.99  Aligned_cols=156  Identities=13%  Similarity=0.063  Sum_probs=85.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEE-ecCCCH----------Hhh
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGF-LGQQQL----------EDA  111 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~-~~t~d~----------~ea  111 (289)
                      +.+++.|+||++.+|..++..|++.|.  +|++.|+++.  +....++....  ..+..+ .+-++.          .+.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~--~V~i~~r~~~~l~~~~~~~~~~~--~~~~~~~~D~s~~~~~~~~~~~~~~~   80 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLSRTERDKLMQTVAHV   80 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CCceEEEeecCCHHHHHHHHHHHHHH
Confidence            456899999999999999999999998  9999999872  22223333322  122211 111121          122


Q ss_pred             h-CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhH----HHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHh
Q 022947          112 L-TGMDIVIIPAGVPRKPG---MT---RDDLFNINA----GIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKV  180 (289)
Q Consensus       112 l-~~aDiVIitag~~~~~g---~~---r~d~~~~N~----~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~  180 (289)
                      + ..-|++|.++|......   .+   ....+..|+    ...+.+.+.+.+. +.+.+++++-.....           
T Consensus        81 ~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~-~~g~ii~isS~~~~~-----------  148 (258)
T d1ae1a_          81 FDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKAS-QNGNVIFLSSIAGFS-----------  148 (258)
T ss_dssp             TTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSEEEEEECCGGGTS-----------
T ss_pred             hCCCcEEEeccccccccCccccCCHHHHhhhhhhccccccccccccccccccc-ccccccccccccccc-----------
Confidence            2 24789999988754321   11   222344443    4455566666555 455666665443221           


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       181 ~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                       +.|..-.++.+.-.-..|-+.+|++++  +..|++-++
T Consensus       149 -~~~~~~~Y~~sK~al~~lt~~lA~el~--~~gIrvN~I  184 (258)
T d1ae1a_         149 -ALPSVSLYSASKGAINQMTKSLACEWA--KDNIRVNSV  184 (258)
T ss_dssp             -CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             -ccccchhHHHHHHHHHHHHHHHHHhcC--cCcEEEEEE
Confidence             232222223322122345677888885  455554433

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.0049  Score=52.13  Aligned_cols=116  Identities=20%  Similarity=0.134  Sum_probs=71.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCCH----------Hhhh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL----------EDAL  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~----------~eal  112 (289)
                      .+.+.|+||++-+|..+|..|++.|.  .|++.|+++.  .....++.......++..+. +-++.          .+.+
T Consensus         3 GKvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (254)
T d2gdza1           3 GKVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   80 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            45788889999999999999999997  9999999862  22233333321111222211 11121          1234


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhHHHhhH----HHHHHHHHHHHHhC--CCcEEEEecCC
Q 022947          113 TGMDIVIIPAGVPRKPGMTRDDLFNINA----GIVKTLCEGIAKCC--PKAIVNLISNP  165 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g~~r~d~~~~N~----~i~~~i~~~i~~~~--p~aiviv~tNP  165 (289)
                      ...|++|..||.....  +..+.+..|+    ...+..++.+.+..  ..+.|++++..
T Consensus        81 G~iDilVnnAg~~~~~--~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~  137 (254)
T d2gdza1          81 GRLDILVNNAGVNNEK--NWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSL  137 (254)
T ss_dssp             SCCCEEEECCCCCCSS--SHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCG
T ss_pred             CCcCeecccccccccc--cchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccH
Confidence            5799999999976433  2344455554    45566666665543  34677777643

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=96.89  E-value=0.0085  Score=50.82  Aligned_cols=155  Identities=14%  Similarity=0.072  Sum_probs=84.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCceEEEEe-cCCC---H-------Hhhh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ---L-------EDAL  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~~-~t~d---~-------~eal  112 (289)
                      .+.+.|+||++-+|..++..|+..|.  .|++.|+++  .+....++....  .+...+. +-+|   .       .+.+
T Consensus         8 GK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (259)
T d2ae2a_           8 GCTALVTGGSRGIGYGIVEELASLGA--SVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANHF   83 (259)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCCCHHHHHHHHHHHHHHh
Confidence            45788999999999999999999997  899999986  222233333321  1222211 1111   1       1223


Q ss_pred             C-CCCEEEEcCCCCCCCC---Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhC
Q 022947          113 T-GMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (289)
Q Consensus       113 ~-~aDiVIitag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~  181 (289)
                      . ..|++|..||......   .+   ....+..|+.    ..+...+.+.+. +.+.|++++.-....            
T Consensus        84 ~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~Ii~isS~~~~~------------  150 (259)
T d2ae2a_          84 HGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKAS-ERGNVVFISSVSGAL------------  150 (259)
T ss_dssp             TTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-SSEEEEEECCGGGTS------------
T ss_pred             CCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhh-ccccccccccccccc------------
Confidence            3 4799999999754321   12   2234556654    344455555443 466676665432211            


Q ss_pred             CCCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       182 ~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                      +.|..-.++.+.-.-..|-+.+|.+++  +..|++-.+
T Consensus       151 ~~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~I  186 (259)
T d2ae2a_         151 AVPYEAVYGATKGAMDQLTRCLAFEWA--KDNIRVNGV  186 (259)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEEEE
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHhC--cCceEEEEe
Confidence            122211222222122346677888874  556665544

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.0048  Score=51.76  Aligned_cols=161  Identities=14%  Similarity=0.141  Sum_probs=86.4

Q ss_pred             CCCCEEEEEcCCC--ccHHHHHHHHHhCCCccEEEEEeCCC-chhHHhhhhcccCCceEEEEecCC---------CHHhh
Q 022947           44 SPGFKVAVLGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQ---------QLEDA  111 (289)
Q Consensus        44 ~~~~KI~IIGaaG--~VGs~la~~L~~~g~~~eI~LvD~~~-~~g~~~DL~~~~~~~~v~~~~~t~---------d~~ea  111 (289)
                      -+.+++.|+||+|  -+|..+|..|++.|.  +|++.|+++ ....+.++..............+.         +..+.
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKV   80 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhc
Confidence            3466899999977  588999999999998  899999987 333333333221111111111110         11222


Q ss_pred             hCCCCEEEEcCCCCCCCCC---c----hh----hHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHH
Q 022947          112 LTGMDIVIIPAGVPRKPGM---T----RD----DLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKK  179 (289)
Q Consensus       112 l~~aDiVIitag~~~~~g~---~----r~----d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~  179 (289)
                      +...|++|..++.......   .    ..    ..+..|......+.+.+..+- +...++++|.....           
T Consensus        81 ~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~-----------  149 (258)
T d1qsga_          81 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAE-----------  149 (258)
T ss_dssp             CSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGT-----------
T ss_pred             ccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhc-----------
Confidence            3566888888765322111   0    11    123344455555555555543 44556665543311           


Q ss_pred             hCCCCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEEc
Q 022947          180 VGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (289)
Q Consensus       180 ~~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~G  220 (289)
                       .+.|..-.++.+.---..+-+.+|++++  ++.|++-++-
T Consensus       150 -~~~~~~~~Y~~sKaal~~ltr~lA~el~--~~gIrVN~I~  187 (258)
T d1qsga_         150 -RAIPNYNVMGLAKASLEANVRYMANAMG--PEGVRVNAIS  187 (258)
T ss_dssp             -SBCTTTTHHHHHHHHHHHHHHHHHHHHT--TTTEEEEEEE
T ss_pred             -cCCCCcHHHHHHHHHHHHHHHHHHHHhC--ccCceeeccc
Confidence             1222222333332223456788999985  6677766553

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.88  E-value=0.0041  Score=52.63  Aligned_cols=153  Identities=18%  Similarity=0.201  Sum_probs=86.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCceEEEEe-cCCCH----------HhhhCC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQL----------EDALTG  114 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~~-~t~d~----------~eal~~  114 (289)
                      .+.|+||++-+|..++..|+..|.  .|++.|+++  .+..+.++....  .++..+. +-+|.          .+.+..
T Consensus        12 valITGas~GIG~a~a~~la~~Ga--~V~~~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~   87 (251)
T d2c07a1          12 VALVTGAGRGIGREIAKMLAKSVS--HVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSKKEEISEVINKILTEHKN   87 (251)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTTSS--EEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            455679999999999999999997  899999976  223333444322  1222211 11121          233468


Q ss_pred             CCEEEEcCCCCCCCC---Cc---hhhHHHhhH----HHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCC
Q 022947          115 MDIVIIPAGVPRKPG---MT---RDDLFNINA----GIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (289)
Q Consensus       115 aDiVIitag~~~~~g---~~---r~d~~~~N~----~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~  184 (289)
                      -|++|..||......   .+   -...+..|+    ...+..++.+++. ..+.||++|.....           . +.|
T Consensus        88 iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~IVnisS~~~~-----------~-~~~  154 (251)
T d2c07a1          88 VDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINN-RYGRIINISSIVGL-----------T-GNV  154 (251)
T ss_dssp             CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHH-TCEEEEEECCTHHH-----------H-CCT
T ss_pred             ceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccC-CCeEEEEECCHHhc-----------C-CCC
Confidence            999999998754321   11   223444554    4456666666665 35677776643211           0 233


Q ss_pred             CCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       185 ~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                      ..-.++.+.-.-..|-+.+|.+++  +..|++-++
T Consensus       155 ~~~~Y~asKaal~~ltr~lA~el~--~~gIrVN~V  187 (251)
T d2c07a1         155 GQANYSSSKAGVIGFTKSLAKELA--SRNITVNAI  187 (251)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhh--hhCeEEEEE
Confidence            222333332223346677888874  555665544

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=96.88  E-value=0.0096  Score=50.98  Aligned_cols=156  Identities=13%  Similarity=0.017  Sum_probs=82.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCceEEEE-ecCCCH----------HhhhC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGF-LGQQQL----------EDALT  113 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~-~~t~d~----------~eal~  113 (289)
                      +.+.|+||+|.+|..+|..|+..|.  +|++.|+++  ....+.++.... ...+..+ .+-.+.          .+.+.
T Consensus        26 K~alITGas~GIG~aiA~~la~~Ga--~Vii~~r~~~~l~~~~~~l~~~~-g~~~~~~~~D~~~~~~v~~~~~~~~~~~g  102 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSSLGA--QCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDMVQNTVSELIKVAG  102 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHhc-CCceEEEEecccChHHHHHHhhhhhhhcc
Confidence            5788999999999999999999997  999999987  222333443321 1111111 111121          22346


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCC
Q 022947          114 GMDIVIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (289)
Q Consensus       114 ~aDiVIitag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~  183 (289)
                      ..|++|.++|......   .+   ..+.+..|...    .+..+..+........+++.+......            ..
T Consensus       103 ~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~------------~~  170 (294)
T d1w6ua_         103 HPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAET------------GS  170 (294)
T ss_dssp             SCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHH------------CC
T ss_pred             ccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchhhh------------cc
Confidence            8999999998653321   11   12233334332    344444444445556555554432110            12


Q ss_pred             CCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       184 ~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                      +..-.++.+.-.-..|-+.+|..++  +..|++-++
T Consensus       171 ~~~~~YsasKaal~~ltk~lA~ela--~~gIrVN~I  204 (294)
T d1w6ua_         171 GFVVPSASAKAGVEAMSKSLAAEWG--KYGMRFNVI  204 (294)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHh--HhCeEEEEE
Confidence            1111122222122345677888874  555655544

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=96.85  E-value=0.0029  Score=54.03  Aligned_cols=155  Identities=19%  Similarity=0.176  Sum_probs=84.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---H-------Hhhh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---L-------EDAL  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~-------~eal  112 (289)
                      .+.+.|+||++-+|..+|..|+..|.  +|++.|+++.  +..+.++....   .+..+. +-+|   .       .+.+
T Consensus         6 gKvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (268)
T d2bgka1           6 DKVAIITGGAGGIGETTAKLFVRYGA--KVVIADIADDHGQKVCNNIGSPD---VISFVHCDVTKDEDVRNLVDTTIAKH   80 (268)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCTT---TEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcCCC---ceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45788889999999999999999997  9999999872  22233343221   111111 1111   1       1234


Q ss_pred             CCCCEEEEcCCCCCCC-----CCc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHh
Q 022947          113 TGMDIVIIPAGVPRKP-----GMT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKV  180 (289)
Q Consensus       113 ~~aDiVIitag~~~~~-----g~~---r~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~  180 (289)
                      ...|++|..||.....     ..+   ....+..|+.    ..+..++.|.+.. .+.+++++......           
T Consensus        81 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~g~ii~iss~~~~~-----------  148 (268)
T d2bgka1          81 GKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAK-KGSIVFTASISSFT-----------  148 (268)
T ss_dssp             SCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGT-CEEEEEECCGGGTC-----------
T ss_pred             CCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcC-CCCccccccccccc-----------
Confidence            5889999999864321     112   1223455544    4556666665543 45555555433221           


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       181 ~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                      .+.+..-.++.+.-.-..|-+.+|.+++  +..|++-.+
T Consensus       149 ~~~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~I  185 (268)
T d2bgka1         149 AGEGVSHVYTATKHAVLGLTTSLCTELG--EYGIRVNCV  185 (268)
T ss_dssp             CCTTSCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             cccccccccchhHHHHHhCHHHHHHHhC--hhCeEEEec
Confidence            0111111223322223446677788874  555655544

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.85  E-value=0.0018  Score=52.58  Aligned_cols=89  Identities=24%  Similarity=0.266  Sum_probs=60.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      ..++|+|||. |.+|..++..+..-|.  +|..+|....++        .  ..     ...++++.+++||+|+++.  
T Consensus        41 ~gk~vgIiG~-G~IG~~va~~l~~~g~--~v~~~d~~~~~~--------~--~~-----~~~~l~ell~~sDiv~~~~--  100 (181)
T d1qp8a1          41 QGEKVAVLGL-GEIGTRVGKILAALGA--QVRGFSRTPKEG--------P--WR-----FTNSLEEALREARAAVCAL--  100 (181)
T ss_dssp             TTCEEEEESC-STHHHHHHHHHHHTTC--EEEEECSSCCCS--------S--SC-----CBSCSHHHHTTCSEEEECC--
T ss_pred             cCceEEEecc-ccccccceeeeecccc--cccccccccccc--------c--ee-----eeechhhhhhccchhhccc--
Confidence            3568999999 9999999999988887  999999765211        0  00     0135678999999999975  


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      |..+ +++. ++  |.       +.++...|++++|+++=
T Consensus       101 pl~~-~t~~-li--~~-------~~l~~mk~~ailIN~~R  129 (181)
T d1qp8a1         101 PLNK-HTRG-LV--KY-------QHLALMAEDAVFVNVGR  129 (181)
T ss_dssp             CCST-TTTT-CB--CH-------HHHTTSCTTCEEEECSC
T ss_pred             cccc-cccc-cc--cc-------ceeeeccccceEEeccc
Confidence            3222 1221 11  21       33444568999999763

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.014  Score=50.58  Aligned_cols=161  Identities=13%  Similarity=0.072  Sum_probs=88.3

Q ss_pred             CCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhccc---CCceEEEEe-cCCCH------
Q 022947           41 KGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD---TNAVVRGFL-GQQQL------  108 (289)
Q Consensus        41 ~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~---~~~~v~~~~-~t~d~------  108 (289)
                      |+.-+.+.+.|+||++-+|..++..|+..|.  .|++.|+++  .+..+.+|....   ...++..+. +-+|.      
T Consensus         7 ~g~L~gKvalITGas~GIG~aia~~la~~Ga--~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~   84 (297)
T d1yxma1           7 PGLLQGQVAIVTGGATGIGKAIVKELLELGS--NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNL   84 (297)
T ss_dssp             TTTTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHH
Confidence            3334567899999999999999999999998  899999986  233334443211   112333221 11121      


Q ss_pred             ----HhhhCCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecCCCcccHHHHH
Q 022947          109 ----EDALTGMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAA  174 (289)
Q Consensus       109 ----~eal~~aDiVIitag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~  174 (289)
                          .+.+..-|++|..||......   .+   ....+..|+.    ..+.+++.+.+.. .+.+++++.....      
T Consensus        85 ~~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~g~Ii~~ss~~~~------  157 (297)
T d1yxma1          85 VKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEH-GGSIVNIIVPTKA------  157 (297)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHH-CEEEEEECCCCTT------
T ss_pred             HHHHHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhcccc-ccccccccccccc------
Confidence                122458999999998653221   11   2234555644    4455555555544 3445555433211      


Q ss_pred             HHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          175 EVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       175 ~~~~~~~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                             ++|..-.++.+.-.-..|-+.+|.+++  +..|++-++
T Consensus       158 -------~~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrVN~I  193 (297)
T d1yxma1         158 -------GFPLAVHSGAARAGVYNLTKSLALEWA--CSGIRINCV  193 (297)
T ss_dssp             -------CCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEEEE
T ss_pred             -------cccccccchhHHHHHHHHHHHHHHHhc--ccCceEEEe
Confidence                   122211222222222346677888874  555655444

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.014  Score=49.16  Aligned_cols=118  Identities=20%  Similarity=0.255  Sum_probs=73.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCceEEEEe-cCCCH----------Hhhh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQL----------EDAL  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~~-~t~d~----------~eal  112 (289)
                      .+.+.|+||++-+|..++..|++.|.  .|++.|+++  .+..+.++....  .++..+. +-+|.          .+.+
T Consensus         7 Gkv~lITGas~GIG~~ia~~la~~G~--~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~~~   82 (244)
T d1yb1a_           7 GEIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAEI   82 (244)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            34688889999999999999999998  999999987  223333443321  2222211 11222          1235


Q ss_pred             CCCCEEEEcCCCCCCCCC--c----hhhHHHhh----HHHHHHHHHHHHHhCCCcEEEEecCCCcc
Q 022947          113 TGMDIVIIPAGVPRKPGM--T----RDDLFNIN----AGIVKTLCEGIAKCCPKAIVNLISNPVNS  168 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g~--~----r~d~~~~N----~~i~~~i~~~i~~~~p~aiviv~tNPvd~  168 (289)
                      ...|++|.+||.......  .    -.+.+..|    +-..+.+.+.+.+. ..+.|++++.....
T Consensus        83 g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~-~~G~Iv~isS~~~~  147 (244)
T d1yb1a_          83 GDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKN-NHGHIVTVASAAGH  147 (244)
T ss_dssp             CCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCCC-C
T ss_pred             CCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhc-CCceEEEeecchhc
Confidence            689999999987543321  1    12334444    44566777777665 46777777766544

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.80  E-value=0.0016  Score=53.03  Aligned_cols=91  Identities=25%  Similarity=0.257  Sum_probs=57.8

Q ss_pred             ccccccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-chhHHhhhhcccCCc------eEE---EE--
Q 022947           35 RMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNA------VVR---GF--  102 (289)
Q Consensus        35 ~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~~g~~~DL~~~~~~~------~v~---~~--  102 (289)
                      .+.=+..++.++-||.|+|| |-+|..-+...+.-|-  .|..+|++. ...+..++.......      ...   .+  
T Consensus        18 ~~l~~~~g~V~pa~VvViGa-GvaG~~Aa~~A~~lGA--~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~   94 (183)
T d1l7da1          18 PMMMTAAGTVPPARVLVFGV-GVAGLQAIATAKRLGA--VVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAK   94 (183)
T ss_dssp             SCEEETTEEECCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCSTTHHHHHHTTCEECCC----------------
T ss_pred             CCcccccCCcCCcEEEEEcC-cHHHHHHHHHHHHcCC--EEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchh
Confidence            45666777788899999999 9999998877776675  999999987 333322222110000      000   00  


Q ss_pred             --------ecCCCHHhhhCCCCEEEEcCCCCCCC
Q 022947          103 --------LGQQQLEDALTGMDIVIIPAGVPRKP  128 (289)
Q Consensus       103 --------~~t~d~~eal~~aDiVIitag~~~~~  128 (289)
                              .....+.+.+++||+||-++-.|.+.
T Consensus        95 ~~s~~~~~~~~~~l~~~l~~aDlVI~talipG~~  128 (183)
T d1l7da1          95 EMGEEFRKKQAEAVLKELVKTDIAITTALIPGKP  128 (183)
T ss_dssp             -------CCHHHHHHHHHTTCSEEEECCCCTTSC
T ss_pred             hcCHHHHHHHHHHHHHHHHhhhhheeeeecCCcc
Confidence                    00112445689999999998776543

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.79  E-value=0.0073  Score=51.52  Aligned_cols=115  Identities=17%  Similarity=0.206  Sum_probs=68.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccC-CceEEEEe-cCCC---H-------Hhh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFL-GQQQ---L-------EDA  111 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~-~~~v~~~~-~t~d---~-------~ea  111 (289)
                      .+.+.|+||++-+|..++..|+..|.  +|++.|+++  .+....++..... ..++..+. +-+|   .       .+.
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga--~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~   82 (272)
T d1xkqa_           5 NKTVIITGSSNGIGRTTAILFAQEGA--NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   82 (272)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCcCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            34788899999999999999999997  999999986  2233334443321 12232221 1112   1       123


Q ss_pred             hCCCCEEEEcCCCCCCC--C-----Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEec
Q 022947          112 LTGMDIVIIPAGVPRKP--G-----MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       112 l~~aDiVIitag~~~~~--g-----~~---r~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      +...|++|..||.....  .     ++   ....+..|+.    ..+...+.+++. +.++|++.|
T Consensus        83 ~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~-~g~iI~~~S  147 (272)
T d1xkqa_          83 FGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVAS-KGEIVNVSS  147 (272)
T ss_dssp             HSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECC
T ss_pred             hCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhccccccc-CCccccccc
Confidence            45789999999875322  1     11   1223445544    456666666553 455665544

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=96.78  E-value=0.0012  Score=52.52  Aligned_cols=105  Identities=18%  Similarity=0.231  Sum_probs=64.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~  124 (289)
                      +..||.|||+ |.+|..++..|...|. .++.++.+...  .+.++.... ......   -+++.+++.++|+||.+.+.
T Consensus        23 ~~~~ilviGa-G~~g~~v~~~L~~~g~-~~i~v~nRt~~--ka~~l~~~~-~~~~~~---~~~~~~~l~~~Divi~atss   94 (159)
T d1gpja2          23 HDKTVLVVGA-GEMGKTVAKSLVDRGV-RAVLVANRTYE--RAVELARDL-GGEAVR---FDELVDHLARSDVVVSATAA   94 (159)
T ss_dssp             TTCEEEEESC-CHHHHHHHHHHHHHCC-SEEEEECSSHH--HHHHHHHHH-TCEECC---GGGHHHHHHTCSEEEECCSS
T ss_pred             ccCeEEEECC-CHHHHHHHHHHHhcCC-cEEEEEcCcHH--HHHHHHHhh-hccccc---chhHHHHhccCCEEEEecCC
Confidence            4569999998 9999999999988874 57899987542  222222221 111111   24677899999999999765


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhC--CCcEEEEecCCCccc
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCC--PKAIVNLISNPVNST  169 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~--p~aiviv~tNPvd~~  169 (289)
                      +..- .        .-+.++   ..+++..  ...+++=.+.|-|+=
T Consensus        95 ~~~i-i--------~~~~i~---~~~~~r~~~~~~~iiDlavPr~vd  129 (159)
T d1gpja2          95 PHPV-I--------HVDDVR---EALRKRDRRSPILIIDIANPRDVE  129 (159)
T ss_dssp             SSCC-B--------CHHHHH---HHHHHCSSCCCEEEEECCSSCSBC
T ss_pred             CCcc-c--------cHhhhH---HHHHhcccCCCeEEEeecCCCCcC
Confidence            5211 1        112222   2233322  334666679997663

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=96.77  E-value=0.0074  Score=51.11  Aligned_cols=115  Identities=19%  Similarity=0.172  Sum_probs=67.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-chhHHhhhhcccCCceEEEEe--cCCC----------HHhhh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFL--GQQQ----------LEDAL  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~~g~~~DL~~~~~~~~v~~~~--~t~d----------~~eal  112 (289)
                      .+.|.|+||++-+|..+|..|+..|.  .+++++.+. ......++........+..+.  .+.+          ..+.+
T Consensus         5 gK~vlITGgs~GIG~~~A~~la~~G~--~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~   82 (254)
T d1sbya1           5 NKNVIFVAALGGIGLDTSRELVKRNL--KNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL   82 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTCC--SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHHc
Confidence            45799999999999999999999996  666665443 221222222211112222211  1111          11224


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhHHHhhHH----HHHHHHHHHHHh--CCCcEEEEecC
Q 022947          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAG----IVKTLCEGIAKC--CPKAIVNLISN  164 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g~~r~d~~~~N~~----i~~~i~~~i~~~--~p~aiviv~tN  164 (289)
                      ...|++|..||.....  +-...+..|+.    ..+.+.+.+.+.  .+.+.|++++.
T Consensus        83 g~iDilvnnAG~~~~~--~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS  138 (254)
T d1sbya1          83 KTVDILINGAGILDDH--QIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICS  138 (254)
T ss_dssp             SCCCEEEECCCCCCTT--CHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred             CCCCEEEeCCCCCCHH--HHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEec
Confidence            6899999999975432  23345556654    567777777554  35677777653

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=96.76  E-value=0.004  Score=53.41  Aligned_cols=110  Identities=21%  Similarity=0.257  Sum_probs=64.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCceEEEEe-cCCC----------HHhhh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ----------LEDAL  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~~-~t~d----------~~eal  112 (289)
                      .+.+.|+||++-+|..++..|+..|.  +|++.|+++  ......++..     ++..+. +-++          ..+.+
T Consensus         5 gK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~~~~-----~~~~~~~Dv~~~~~~~~~~~~~~~~~   77 (276)
T d1bdba_           5 GEAVLITGGASGLGRALVDRFVAEGA--KVAVLDKSAERLAELETDHGD-----NVLGIVGDVRSLEDQKQAASRCVARF   77 (276)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG-----GEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCC-----CeeEEecccccHHHHHHHHHHHHHHh
Confidence            45789999999999999999999998  999999976  2222222221     111110 0011          12335


Q ss_pred             CCCCEEEEcCCCCCCCC-------Cc----hhhHHHhhH----HHHHHHHHHHHHhCCCcEEEEec
Q 022947          113 TGMDIVIIPAGVPRKPG-------MT----RDDLFNINA----GIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       113 ~~aDiVIitag~~~~~g-------~~----r~d~~~~N~----~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      ...|++|..||......       +.    ....+..|+    ...+.+.+.+++.. -.+|++.|
T Consensus        78 g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-g~iI~i~S  142 (276)
T d1bdba_          78 GKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR-GNVIFTIS  142 (276)
T ss_dssp             SCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECC
T ss_pred             CCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC-CCceeeee
Confidence            68999999998643211       11    122344453    45566677776553 34444433

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.0037  Score=53.32  Aligned_cols=115  Identities=15%  Similarity=0.139  Sum_probs=66.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCceEEEEe-cCCC----------HHhhh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ----------LEDAL  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~~-~t~d----------~~eal  112 (289)
                      .+++.|+||++-+|..+|..|+..|.  +|++.|+++  .+....++.... ...+..+. ...+          ..+.+
T Consensus        14 GK~alITGassGIG~aiA~~la~~G~--~Vil~~r~~~~l~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~   90 (269)
T d1xu9a_          14 GKKVIVTGASKGIGREMAYHLAKMGA--HVVVTARSKETLQKVVSHCLELG-AASAHYIAGTMEDMTFAEQFVAQAGKLM   90 (269)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHT-CSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHhhhh-cccchhhhhhhhhHHHHHHHHHHHHHHh
Confidence            46899999999999999999999997  999999987  222222332221 11222111 1111          12234


Q ss_pred             CCCCEEEEcCCCCCCC---CCch---hhHHHhhH----HHHHHHHHHHHHhCCCcEEEEecCC
Q 022947          113 TGMDIVIIPAGVPRKP---GMTR---DDLFNINA----GIVKTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       113 ~~aDiVIitag~~~~~---g~~r---~d~~~~N~----~i~~~i~~~i~~~~p~aiviv~tNP  165 (289)
                      ...|+++..+|.....   ..+.   ...+..|+    ...+.+.+.+++.  ++.+++++..
T Consensus        91 g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~--~G~ii~isS~  151 (269)
T d1xu9a_          91 GGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS--NGSIVVVSSL  151 (269)
T ss_dssp             TSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEEEG
T ss_pred             CCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhc--CCcceEeccc
Confidence            5789999988764321   1121   12344443    4556666666543  4666666543

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=96.74  E-value=0.0011  Score=54.38  Aligned_cols=93  Identities=19%  Similarity=0.188  Sum_probs=59.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC-
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV-  124 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~-  124 (289)
                      .++|+|||. |.+|+.++..+..-|.  ++..+|.......... ....    ..    ..++++.++.||+|+++... 
T Consensus        47 g~tvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~~-~~~~----~~----~~~l~~ll~~sD~v~l~~plt  114 (191)
T d1gdha1          47 NKTLGIYGF-GSIGQALAKRAQGFDM--DIDYFDTHRASSSDEA-SYQA----TF----HDSLDSLLSVSQFFSLNAPST  114 (191)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSCCCHHHHH-HHTC----EE----CSSHHHHHHHCSEEEECCCCC
T ss_pred             ccceEEeec-ccchHHHHHHHHhhcc--ccccccccccccchhh-cccc----cc----cCCHHHHHhhCCeEEecCCCC
Confidence            569999999 9999999998887777  9999998653211111 1110    11    23577899999999997532 


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 022947          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      +...+.       -|.       +.+....|++++|+++=
T Consensus       115 ~~T~~l-------i~~-------~~l~~mk~~a~lIN~sR  140 (191)
T d1gdha1         115 PETRYF-------FNK-------ATIKSLPQGAIVVNTAR  140 (191)
T ss_dssp             TTTTTC-------BSH-------HHHTTSCTTEEEEECSC
T ss_pred             chHhhe-------ecH-------HHhhCcCCccEEEecCC
Confidence            211121       122       22334558999999863

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.73  E-value=0.00059  Score=54.02  Aligned_cols=70  Identities=23%  Similarity=0.427  Sum_probs=45.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCC-ccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~-~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      .||+|+||+|++|.-+...|..+++ ..++.++.-++..|+..  ...  ........   ..++.+.++|+++++.+
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~--~~~--~~~~~~~~---~~~~~~~~~d~~f~~~~   72 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSL--KFK--DQDITIEE---TTETAFEGVDIALFSAG   72 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEE--EET--TEEEEEEE---CCTTTTTTCSEEEECSC
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccc--ccc--CCcccccc---cchhhhhhhhhhhhccC
Confidence            4899999999999999988888863 56888876544333322  111  11222211   12356889999999864

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=96.72  E-value=0.0095  Score=50.39  Aligned_cols=115  Identities=14%  Similarity=0.164  Sum_probs=69.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC----------HHhhhC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ----------LEDALT  113 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d----------~~eal~  113 (289)
                      +++.|+||++-+|..++..|++.|.  +|++.|+++.  .....++.... ..++..+. +-++          ..+.+.
T Consensus        10 K~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   86 (260)
T d1h5qa_          10 KTIIVTGGNRGIGLAFTRAVAAAGA--NVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCDVSNTDIVTKTIQQIDADLG   86 (260)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCTTHHHHHHHHHHHH-TCCEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHHh-CCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            4788889999999999999999997  8999999872  22223332211 11222111 1111          123346


Q ss_pred             CCCEEEEcCCCCCCCC---Cch---hhHHHhhH----HHHHHHHHHHHHhCCCcEEEEecC
Q 022947          114 GMDIVIIPAGVPRKPG---MTR---DDLFNINA----GIVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       114 ~aDiVIitag~~~~~g---~~r---~d~~~~N~----~i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      .-|++|..||......   .+.   .+.+..|+    ...+.+++.+.+....+.+++.+.
T Consensus        87 ~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s  147 (260)
T d1h5qa_          87 PISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSS  147 (260)
T ss_dssp             SEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             CCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeec
Confidence            8999999998653221   122   23445554    355667777766666777666543

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=96.72  E-value=0.004  Score=52.37  Aligned_cols=152  Identities=17%  Similarity=0.113  Sum_probs=89.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe----cCCC-------HHhhh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL----GQQQ-------LEDAL  112 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~----~t~d-------~~eal  112 (289)
                      .+++.|+||++.+|..+|..|+..|.  +|++.|+++.  .....++..     ++..+.    ..++       ..+.+
T Consensus         5 gK~alItGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dls~~~~i~~~~~~i~~~~   77 (241)
T d2a4ka1           5 GKTILVTGAASGIGRAALDLFAREGA--SLVAVDREERLLAEAVAALEA-----EAIAVVADVSDPKAVEAVFAEALEEF   77 (241)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCCS-----SEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCC-----ceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            45788999999999999999999998  9999999862  222222221     111111    1111       22334


Q ss_pred             CCCCEEEEcCCCCCC-C--CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCC
Q 022947          113 TGMDIVIIPAGVPRK-P--GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (289)
Q Consensus       113 ~~aDiVIitag~~~~-~--g~~---r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~  185 (289)
                      ..-|++|..||.... +  ..+   ..+.+..|+.....+.+....+. ....++++|.....-.+-             
T Consensus        78 g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~~~~-------------  144 (241)
T d2a4ka1          78 GRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGAFG-------------  144 (241)
T ss_dssp             SCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCHHH-------------
T ss_pred             CCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccccccccC-------------
Confidence            679999999886432 2  122   23456778777777777776665 344555555443222111             


Q ss_pred             CcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          186 KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       186 ~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                      .-.++.+.-.-..|-+.+|++++  +..|++-++
T Consensus       145 ~~~Y~~sK~al~~lt~~lA~el~--~~gIrvN~I  176 (241)
T d2a4ka1         145 LAHYAAGKLGVVGLARTLALELA--RKGVRVNVL  176 (241)
T ss_dssp             HHHHHHCSSHHHHHHHHHHHHHT--TTTCEEEEE
T ss_pred             ccccchhhHHHHHHHHHHHHHHh--HhCCEEeee
Confidence            11123333334457788999985  445555444

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.70  E-value=0.012  Score=43.45  Aligned_cols=69  Identities=14%  Similarity=0.140  Sum_probs=46.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      .+||.|||+ |.+|..-+..|+..|-  +|.+++....... .++.+.   ..+.......+ ++.+.++++|+.+.
T Consensus        12 ~k~vlVvG~-G~va~~ka~~ll~~ga--~v~v~~~~~~~~~-~~~~~~---~~i~~~~~~~~-~~dl~~~~lv~~at   80 (113)
T d1pjqa1          12 DRDCLIVGG-GDVAERKARLLLEAGA--RLTVNALTFIPQF-TVWANE---GMLTLVEGPFD-ETLLDSCWLAIAAT   80 (113)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTB--EEEEEESSCCHHH-HHHHTT---TSCEEEESSCC-GGGGTTCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEeccCChHH-HHHHhc---CCceeeccCCC-HHHhCCCcEEeecC
Confidence            359999999 9999999999999986  8999987653222 222222   12222222222 36799999999874

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=96.67  E-value=0.0027  Score=49.75  Aligned_cols=85  Identities=13%  Similarity=0.082  Sum_probs=50.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCCCC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRK  127 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~~~  127 (289)
                      ||++||. |.+|+.++..|+..++  .++ ++....  ...++.....  ...     .. .+.+.++|++|++.-    
T Consensus         2 kIg~IGl-G~MG~~ma~~L~~~g~--~~~-~~~~~~--~~~~~~~~~~--~~~-----~~-~~~~~~~~~~i~~~~----   63 (156)
T d2cvza2           2 KVAFIGL-GAMGYPMAGHLARRFP--TLV-WNRTFE--KALRHQEEFG--SEA-----VP-LERVAEARVIFTCLP----   63 (156)
T ss_dssp             CEEEECC-STTHHHHHHHHHTTSC--EEE-ECSSTH--HHHHHHHHHC--CEE-----CC-GGGGGGCSEEEECCS----
T ss_pred             eEEEEeH-HHHHHHHHHHHHhCCC--EEE-EeCCHH--HHHHHHHHcC--Ccc-----cc-cccccceeEEEeccc----
Confidence            7999998 9999999999998886  554 544332  1222222111  111     12 366788999998742    


Q ss_pred             CCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEE
Q 022947          128 PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL  161 (289)
Q Consensus       128 ~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv  161 (289)
                                 +.+.+......+.....+..+++
T Consensus        64 -----------~~~~v~~~~~~l~~~~~~~~~ii   86 (156)
T d2cvza2          64 -----------TTREVYEVAEALYPYLREGTYWV   86 (156)
T ss_dssp             -----------SHHHHHHHHHHHTTTCCTTEEEE
T ss_pred             -----------chhhhhhhhcccccccccccccc
Confidence                       22344555566665554444433

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.64  E-value=0.0066  Score=51.53  Aligned_cols=156  Identities=15%  Similarity=0.130  Sum_probs=81.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccC-CceEEEEe-cCCC---H-------Hhhh
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFL-GQQQ---L-------EDAL  112 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~-~~~v~~~~-~t~d---~-------~eal  112 (289)
                      +.+.|+||++-+|..++..|+..|.  +|++.|+++  .+....++..... ..++..+. +-++   .       .+.+
T Consensus         6 KvalVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   83 (264)
T d1spxa_           6 KVAIITGSSNGIGRATAVLFAREGA--KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKF   83 (264)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            3567779999999999999999997  899999986  2333344443321 12233221 1111   1       1224


Q ss_pred             CCCCEEEEcCCCCCCC-------CCc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHH
Q 022947          113 TGMDIVIIPAGVPRKP-------GMT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFK  178 (289)
Q Consensus       113 ~~aDiVIitag~~~~~-------g~~---r~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~  178 (289)
                      ...|++|..||.....       ..+   ....+..|+.    ..+.+.+.+++. ..++|++.|--....         
T Consensus        84 g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~-~g~iI~~~S~~~~~~---------  153 (264)
T d1spxa_          84 GKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSST-KGEIVNISSIASGLH---------  153 (264)
T ss_dssp             SCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECCTTSSSS---------
T ss_pred             CCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccc-cCcceeeeeeccccc---------
Confidence            5899999999864211       112   1223444544    556666666554 345555444222111         


Q ss_pred             HhCCCCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          179 KVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       179 ~~~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                         +.|..-.++.+.-.-..|-+.+|.+++  +..|++-.+
T Consensus       154 ---~~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~V  189 (264)
T d1spxa_         154 ---ATPDFPYYSIAKAAIDQYTRNTAIDLI--QHGIRVNSI  189 (264)
T ss_dssp             ---CCTTSHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             ---cCCCchhhhhhhhhHHHHHHHHHHHhc--ccCeEEEEE
Confidence               122111222222222345677788874  555655544

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=96.64  E-value=0.0011  Score=56.53  Aligned_cols=117  Identities=14%  Similarity=0.134  Sum_probs=68.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccC--CceEEEEec----CCCHHhhhCCCCE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--NAVVRGFLG----QQQLEDALTGMDI  117 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~--~~~v~~~~~----t~d~~eal~~aDi  117 (289)
                      .+.+.|+||++-+|..++..|+..|.  .|++.|+++  .+....++.....  ..++.....    -....+.+..-|+
T Consensus         6 gK~alITGas~GIG~aia~~la~~Ga--~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDi   83 (253)
T d1hxha_           6 GKVALVTGGASGVGLEVVKLLLGEGA--KVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNV   83 (253)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhCCCCe
Confidence            35788889999999999999999998  899999986  2222333322110  011100000    0112233468899


Q ss_pred             EEEcCCCCCCC---CCc---hhhHHHhhH----HHHHHHHHHHHHhCCCcEEEEecCCC
Q 022947          118 VIIPAGVPRKP---GMT---RDDLFNINA----GIVKTLCEGIAKCCPKAIVNLISNPV  166 (289)
Q Consensus       118 VIitag~~~~~---g~~---r~d~~~~N~----~i~~~i~~~i~~~~p~aiviv~tNPv  166 (289)
                      +|..||.....   ..+   -...+..|+    ...+...+.|++  ..+.|++++...
T Consensus        84 lVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~--~~G~Iv~isS~~  140 (253)
T d1hxha_          84 LVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKE--TGGSIINMASVS  140 (253)
T ss_dssp             EEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--TCEEEEEECCGG
T ss_pred             EEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCCceecccchh
Confidence            99999975322   112   123445554    345666666654  247777776543

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=96.60  E-value=0.0021  Score=52.94  Aligned_cols=91  Identities=25%  Similarity=0.226  Sum_probs=59.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      .++|+|+|. |.+|+.++..+..-|.  +|+.+|.....+..         .....    .++++.++.||+|+++.-..
T Consensus        45 ~ktvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~---------~~~~~----~~l~~l~~~~D~v~~~~plt  108 (199)
T d1dxya1          45 QQTVGVMGT-GHIGQVAIKLFKGFGA--KVIAYDPYPMKGDH---------PDFDY----VSLEDLFKQSDVIDLHVPGI  108 (199)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSSCC---------TTCEE----CCHHHHHHHCSEEEECCCCC
T ss_pred             ceeeeeeec-ccccccccccccccce--eeeccCCccchhhh---------cchhH----HHHHHHHHhcccceeeeccc
Confidence            358999998 9999999999988887  99999976422110         11111    25678899999999985221


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCC
Q 022947          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNP  165 (289)
                        + .++. +  -|.       +.+....+++++|+++=.
T Consensus       109 --~-~T~~-l--i~~-------~~l~~mk~~a~lIN~aRG  135 (199)
T d1dxya1         109 --E-QNTH-I--INE-------AAFNLMKPGAIVINTARP  135 (199)
T ss_dssp             --G-GGTT-S--BCH-------HHHHHSCTTEEEEECSCT
T ss_pred             --c-cccc-c--ccH-------HHhhccCCceEEEecccH
Confidence              1 1111 1  122       233444689999998754

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.60  E-value=0.0015  Score=53.20  Aligned_cols=93  Identities=28%  Similarity=0.364  Sum_probs=60.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      .++|+|+|. |.+|+.++..+..-|.  +|+.+|.........+..       +..    .++++.++.||+|+++....
T Consensus        44 ~k~vgiiG~-G~IG~~va~~~~~fg~--~v~~~d~~~~~~~~~~~~-------~~~----~~l~ell~~sDiv~~~~Plt  109 (184)
T d1ygya1          44 GKTVGVVGL-GRIGQLVAQRIAAFGA--YVVAYDPYVSPARAAQLG-------IEL----LSLDDLLARADFISVHLPKT  109 (184)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCHHHHHHHT-------CEE----CCHHHHHHHCSEEEECCCCS
T ss_pred             ceeeeeccc-cchhHHHHHHhhhccc--eEEeecCCCChhHHhhcC-------cee----ccHHHHHhhCCEEEEcCCCC
Confidence            458999998 9999999998887776  999999765322222111       111    25678899999999985321


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCC
Q 022947          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNP  165 (289)
                        +. ++. +  -|.       +.+....|++++|+++=-
T Consensus       110 --~~-T~~-l--in~-------~~l~~mk~~a~lIN~sRG  136 (184)
T d1ygya1         110 --PE-TAG-L--IDK-------EALAKTKPGVIIVNAARG  136 (184)
T ss_dssp             --TT-TTT-C--BCH-------HHHTTSCTTEEEEECSCT
T ss_pred             --ch-hhh-h--hhH-------HHHhhhCCCceEEEecch
Confidence              11 111 1  122       223445589999998643

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.58  E-value=0.01  Score=46.61  Aligned_cols=133  Identities=15%  Similarity=0.228  Sum_probs=73.5

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      .+..+|.|+|+ |.||...+..+...|.  +++.+|.++. ...+.++.-    ..+..+..........++.|++|.+.
T Consensus        29 ~~G~~VlI~Ga-G~vG~~a~qlak~~Ga--~~i~~~~~~~~~~~a~~lGa----d~~i~~~~~~~~~~~~~~~D~vid~~  101 (168)
T d1uufa2          29 GPGKKVGVVGI-GGLGHMGIKLAHAMGA--HVVAFTTSEAKREAAKALGA----DEVVNSRNADEMAAHLKSFDFILNTV  101 (168)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHTC----SEEEETTCHHHHHTTTTCEEEEEECC
T ss_pred             CCCCEEEEecc-chHHHHHHHHhhcccc--cchhhccchhHHHHHhccCC----cEEEECchhhHHHHhcCCCceeeeee
Confidence            44568999998 9999999888888886  6677887652 222232221    11111111112233457899999998


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHH-HHHHHHHhCCCCCCcEEEe---eeccHHH
Q 022947          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPI-AAEVFKKVGTYDPKRLLGV---TMLDVVR  198 (289)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~-~~~~~~~~~~~~~~kviG~---t~lds~R  198 (289)
                      |.+..               +   -..+.-..|.+.++.++-|.+....+ ....+     +...+++|.   +.-|..+
T Consensus       102 g~~~~---------------~---~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~l~-----~k~~~i~Gs~~~~~~d~~e  158 (168)
T d1uufa2         102 AAPHN---------------L---DDFTTLLKRDGTMTLVGAPATPHKSPEVFNLI-----MKRRAIAGSMIGGIPETQE  158 (168)
T ss_dssp             SSCCC---------------H---HHHHTTEEEEEEEEECCCC-------CHHHHH-----TTTCEEEECCSCCHHHHHH
T ss_pred             ecchh---------------H---HHHHHHHhcCCEEEEeccCCCCcccccHHHHH-----HCCcEEEEEeecCHHHHHH
Confidence            75411               1   12233345889998887665432211 11111     334578887   3455555


Q ss_pred             HHHHHHHH
Q 022947          199 ANTFVAEV  206 (289)
Q Consensus       199 ~~~~lA~~  206 (289)
                      +..+++++
T Consensus       159 ~l~l~a~~  166 (168)
T d1uufa2         159 MLDFCAEH  166 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHc
Confidence            55655553

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=96.54  E-value=0.0046  Score=48.03  Aligned_cols=100  Identities=10%  Similarity=-0.040  Sum_probs=60.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEecCCC---H-HhhhCCCCEEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQ---L-EDALTGMDIVI  119 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~~t~d---~-~eal~~aDiVI  119 (289)
                      +..|.|+|. |.+|..++..|...+.  +++++|.++.  .....++....  ..+- +...++   + +..+.+||.||
T Consensus         3 knHiII~G~-g~~g~~l~~~L~~~~~--~v~vId~d~~~~~~~~~~~~~~~--~~vi-~Gd~~d~~~L~~a~i~~a~~vi   76 (153)
T d1id1a_           3 KDHFIVCGH-SILAINTILQLNQRGQ--NVTVISNLPEDDIKQLEQRLGDN--ADVI-PGDSNDSSVLKKAGIDRCRAIL   76 (153)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHCTT--CEEE-ESCTTSHHHHHHHTTTTCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCC--CEEEEeccchhHHHHHHHhhcCC--cEEE-EccCcchHHHHHhccccCCEEE
Confidence            457999999 9999999999999887  8999998762  22222222211  1111 111122   2 22367899999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEe-cCCC
Q 022947          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI-SNPV  166 (289)
Q Consensus       120 itag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~-tNPv  166 (289)
                      ++.+.         |  ..|+.    ++..+++.+|+..++.- .+|.
T Consensus        77 ~~~~~---------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~  109 (153)
T d1id1a_          77 ALSDN---------D--ADNAF----VVLSAKDMSSDVKTVLAVSDSK  109 (153)
T ss_dssp             ECSSC---------H--HHHHH----HHHHHHHHTSSSCEEEECSSGG
T ss_pred             Ecccc---------H--HHHHH----HHHHHHHhCCCCceEEEEcCHH
Confidence            98531         1  23443    34456677888655554 4554

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.48  E-value=0.012  Score=49.32  Aligned_cols=155  Identities=15%  Similarity=0.156  Sum_probs=85.1

Q ss_pred             E-EEEEcCCCccHHHHHHHHHhCCC-----ccEEEEEeCCC--chhHHhhhhcccCCceEEEEe-cCCC----------H
Q 022947           48 K-VAVLGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ----------L  108 (289)
Q Consensus        48 K-I~IIGaaG~VGs~la~~L~~~g~-----~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~~-~t~d----------~  108 (289)
                      + |.|+||++-+|..++..|+..|.     ...|+++|+++  .+....++....  .+...+. +-+|          .
T Consensus         2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dvt~~~~v~~~~~~~   79 (240)
T d2bd0a1           2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEG--ALTDTITADISDMADVRRLTTHI   79 (240)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTT--CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHH
Confidence            5 46789999999999999998875     12488999876  222333443321  2222211 1111          2


Q ss_pred             HhhhCCCCEEEEcCCCCCCCC---Cc---hhhHHHhhH----HHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHH
Q 022947          109 EDALTGMDIVIIPAGVPRKPG---MT---RDDLFNINA----GIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFK  178 (289)
Q Consensus       109 ~eal~~aDiVIitag~~~~~g---~~---r~d~~~~N~----~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~  178 (289)
                      .+.+...|++|..||......   .+   -...+..|+    ...+.+.+.|++. ..+.+++++.-....         
T Consensus        80 ~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~-~~G~Ii~isS~~~~~---------  149 (240)
T d2bd0a1          80 VERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQ-HSGHIFFITSVAATK---------  149 (240)
T ss_dssp             HHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTS---------
T ss_pred             HHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhc-CCCceEEEechhhcC---------
Confidence            233467999999998753321   11   223455554    4566677777664 456777766443221         


Q ss_pred             HhCCCCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          179 KVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       179 ~~~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                         ++|..-.++.+.-.-..|-+.+|.+++  +..|++-.+
T Consensus       150 ---~~~~~~~Y~asK~al~~lt~~la~el~--~~gIrvn~i  185 (240)
T d2bd0a1         150 ---AFRHSSIYCMSKFGQRGLVETMRLYAR--KCNVRITDV  185 (240)
T ss_dssp             ---CCTTCHHHHHHHHHHHHHHHHHHHHHT--TTTEEEEEE
T ss_pred             ---CCCCChHHHHHHHHHHHHHHHHHHHhC--cCCeEEEEe
Confidence               232222223222222345666777764  455665544

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.44  E-value=0.0016  Score=53.36  Aligned_cols=34  Identities=26%  Similarity=0.356  Sum_probs=31.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .+||+|||| |..|.+.|+.|+++|+  +|.++|.+.
T Consensus         6 ~~kVvVIGa-GiaGl~~A~~L~~~G~--~V~vier~~   39 (268)
T d1c0pa1           6 QKRVVVLGS-GVIGLSSALILARKGY--SVHILARDL   39 (268)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             CCcEEEECc-cHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            459999999 9999999999999998  999999864

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=96.41  E-value=0.0027  Score=50.69  Aligned_cols=74  Identities=19%  Similarity=0.192  Sum_probs=43.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccC--CceEEEEecCCCHHhhhCCCCEEEEc
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVIIP  121 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~--~~~v~~~~~t~d~~eal~~aDiVIit  121 (289)
                      ..+||+|+|++|.+|+.++..+.+.+-+.=+..+|.........|+.....  ...+..   +.++++.++++|+||=-
T Consensus         3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~---~~~~~~~~~~~DViIDF   78 (162)
T d1diha1           3 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV---QSSLDAVKDDFDVFIDF   78 (162)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCE---ESCSTTTTTSCSEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCcee---eccHHHHhcccceEEEe
Confidence            457999999999999999988877653222345565431111122222211  112222   23566778999988753

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.40  E-value=0.0014  Score=55.32  Aligned_cols=38  Identities=18%  Similarity=0.203  Sum_probs=33.7

Q ss_pred             CCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      ...+++||+|||| |..|.+.|..|++.|+  +|.++|..+
T Consensus        26 ~~~~pkkV~IIGa-G~aGLsaA~~L~~~G~--~V~vlE~~~   63 (370)
T d2iida1          26 ATSNPKHVVIVGA-GMAGLSAAYVLAGAGH--QVTVLEASE   63 (370)
T ss_dssp             CCSSCCEEEEECC-BHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             CCCCCCeEEEECC-CHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            3456779999998 9999999999999998  999999765

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=96.35  E-value=0.0023  Score=51.04  Aligned_cols=67  Identities=18%  Similarity=0.380  Sum_probs=43.9

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      ++++||+|+|+ |.+|+.++..+...+-+.-+.++|.++...         .......   ..++.+...+.|+|+++..
T Consensus         1 M~kirvgiiG~-G~ig~~~~~~l~~~~~~elvav~~~~~~~~---------~~~~~~~---~~~~~~~~~~~D~Vvi~tp   67 (170)
T d1f06a1           1 MTNIRVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFSRRATLD---------TKTPVFD---VADVDKHADDVDVLFLCMG   67 (170)
T ss_dssp             CCCEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEEESSSCCS---------SSSCEEE---GGGGGGTTTTCSEEEECSC
T ss_pred             CCcceEEEECC-hHHHHHHHHHHHhCCCcEEEEEEecccccc---------ccccccc---chhhhhhccccceEEEeCC
Confidence            35679999998 999999888887765443445666654210         0112222   2355567789999999853

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.29  E-value=0.021  Score=48.24  Aligned_cols=156  Identities=13%  Similarity=0.064  Sum_probs=81.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCceEEEEe-cCCC---H-------Hhh
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ---L-------EDA  111 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~~-~t~d---~-------~ea  111 (289)
                      +.+++.|+||++-+|..+|..|+..|.  .|++.|+++  .+..+.++....  .++..+. +-++   .       .+.
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   82 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGA--VIHTCARNEYELNECLSKWQKKG--FQVTGSVCDASLRPEREKLMQTVSSM   82 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CceEEEeccCCCHHHHHHHHHHHHHH
Confidence            345788999999999999999999998  899999986  222233333321  1222211 1111   1       122


Q ss_pred             hC-CCCEEEEcCCCCCCC---CCch---hhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHh
Q 022947          112 LT-GMDIVIIPAGVPRKP---GMTR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKV  180 (289)
Q Consensus       112 l~-~aDiVIitag~~~~~---g~~r---~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~  180 (289)
                      +. .-|++|..||.....   ..+.   ...+..|+.    ..+.+.+.|++.. .+.|+++|.-....           
T Consensus        83 ~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Iv~isS~~~~~-----------  150 (259)
T d1xq1a_          83 FGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASG-CGNIIFMSSIAGVV-----------  150 (259)
T ss_dssp             HTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCEEEEEC-----------------
T ss_pred             hCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccc-cccccccccccccc-----------
Confidence            32 479999999864321   2222   234555554    4455666665543 45666665433221           


Q ss_pred             CCCCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       181 ~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                       +.+..-.++.+.-.-..|-+.+|.+++  +..|++-++
T Consensus       151 -~~~~~~~Y~asKaal~~lt~~lA~e~~--~~gIrVN~V  186 (259)
T d1xq1a_         151 -SASVGSIYSATKGALNQLARNLACEWA--SDGIRANAV  186 (259)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             -cccccccccccccchhhhhHHHHHHhc--ccCeEEEEe
Confidence             122222233332223345677788773  455555444

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.29  E-value=0.023  Score=47.70  Aligned_cols=152  Identities=9%  Similarity=0.032  Sum_probs=82.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcccCCceEEEEecCCCH-------HhhhCCCCEEE
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQL-------EDALTGMDIVI  119 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~~~~~~v~~~~~t~d~-------~eal~~aDiVI  119 (289)
                      ...|+||++-+|..+|..|++.|.  .|++.|++.. ..+...+........+.   ...+.       .+.+-.-|++|
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~~~~dv~---~~~~~~~~~~~~~~~~G~iDiLV   76 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGH--TVACHDESFKQKDELEAFAETYPQLKPM---SEQEPAELIEAVTSAYGQVDVLV   76 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHCTTSEEC---CCCSHHHHHHHHHHHHSCCCEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHhhhCcEEEeccC---CHHHHHHHHHHHHHHcCCCCEEE
Confidence            457999999999999999999997  8999998752 11111111111111211   11122       23456899999


Q ss_pred             EcCCCCC--CC--CCchh---hHHHhh----HHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcE
Q 022947          120 IPAGVPR--KP--GMTRD---DLFNIN----AGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRL  188 (289)
Q Consensus       120 itag~~~--~~--g~~r~---d~~~~N----~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kv  188 (289)
                      ..||...  ++  ..+..   ..+..|    ....+.+.+.|++.. .+.|+++|.-....            +.|..-.
T Consensus        77 nNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~-~G~IV~isS~~~~~------------~~~~~~~  143 (252)
T d1zmta1          77 SNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK-SGHIIFITSATPFG------------PWKELST  143 (252)
T ss_dssp             EECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCSTTTS------------CCTTCHH
T ss_pred             ECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccc-cceeeccccccccc------------ccccccc
Confidence            9888542  22  11222   233344    445677777777664 46666665433221            1221112


Q ss_pred             EEeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          189 LGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       189 iG~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                      ++.+.-.-..|-+.+|++++  +..|++-++
T Consensus       144 Y~asKaal~~lt~~lA~ela--~~gIrVN~I  172 (252)
T d1zmta1         144 YTSARAGACTLANALSKELG--EYNIPVFAI  172 (252)
T ss_dssp             HHHHHHHHHHHHHHHHHHHG--GGTCCEEEE
T ss_pred             cccccccHHHHHHHHHHHhc--ccCcEEEEE
Confidence            22222222345677788874  455554444

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.23  E-value=0.0085  Score=50.37  Aligned_cols=158  Identities=13%  Similarity=0.188  Sum_probs=83.8

Q ss_pred             CCEEEEEcCCC--ccHHHHHHHHHhCCCccEEEEEeCCC-chhHHhhhhcccCCce-EEE-EecCCC-------HHhhhC
Q 022947           46 GFKVAVLGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAV-VRG-FLGQQQ-------LEDALT  113 (289)
Q Consensus        46 ~~KI~IIGaaG--~VGs~la~~L~~~g~~~eI~LvD~~~-~~g~~~DL~~~~~~~~-v~~-~~~t~d-------~~eal~  113 (289)
                      .+++.|+||+|  -+|..+|..|+..|.  +|++.|+++ ....+.++........ +.. .+...+       ..+.+.
T Consensus         8 gK~alITGas~~~GIG~aiA~~la~~Ga--~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (256)
T d1ulua_           8 GKKALVMGVTNQRSLGFAIAAKLKEAGA--EVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFG   85 (256)
T ss_dssp             TCEEEEESCCCSSSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHHhcC
Confidence            45799999976  599999999999997  899999876 2222222222111111 110 000011       123346


Q ss_pred             CCCEEEEcCCCCCCC-------CCchh---hHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCC
Q 022947          114 GMDIVIIPAGVPRKP-------GMTRD---DLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (289)
Q Consensus       114 ~aDiVIitag~~~~~-------g~~r~---d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~  182 (289)
                      .-|++|..||.....       ..+..   ..+..|+.....+++.....- ..+.+++++.-...            .+
T Consensus        86 ~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~------------~~  153 (256)
T d1ulua_          86 GLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASE------------KV  153 (256)
T ss_dssp             SEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGT------------SB
T ss_pred             CceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhc------------CC
Confidence            789999999864321       11222   234556555555555544332 35667766543211            12


Q ss_pred             CCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       183 ~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                      .|..-.++.+.-.-..+-+.+|.+++  +..|++-.+
T Consensus       154 ~~~~~~Y~asKaal~~ltr~lA~ela--~~gIrVN~I  188 (256)
T d1ulua_         154 VPKYNVMAIAKAALEASVRYLAYELG--PKGVRVNAI  188 (256)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHhc--ccCCEEeee
Confidence            22222233332222345677888874  555665544

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=96.20  E-value=0.0045  Score=50.85  Aligned_cols=91  Identities=23%  Similarity=0.313  Sum_probs=58.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      .++|+|||. |.||+.+|..+..-|.  +|..+|.........   . ..  .      ..++++.++.||+|+++....
T Consensus        43 gk~vgIiG~-G~IG~~va~~l~~fg~--~V~~~d~~~~~~~~~---~-~~--~------~~~l~~~l~~sDii~~~~plt  107 (197)
T d1j4aa1          43 DQVVGVVGT-GHIGQVFMQIMEGFGA--KVITYDIFRNPELEK---K-GY--Y------VDSLDDLYKQADVISLHVPDV  107 (197)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHH---T-TC--B------CSCHHHHHHHCSEEEECSCCC
T ss_pred             CCeEEEecc-cccchhHHHhHhhhcc--cccccCccccccccc---c-ee--e------eccccccccccccccccCCcc
Confidence            458999998 9999999999988887  999999765211111   1 10  0      135778899999999985321


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 022947          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                        + .++. +  -|.+.       ++...+++++|+++=
T Consensus       108 --~-~T~~-l--i~~~~-------l~~mk~~a~lIN~sR  133 (197)
T d1j4aa1         108 --P-ANVH-M--INDES-------IAKMKQDVVIVNVSR  133 (197)
T ss_dssp             --G-GGTT-C--BSHHH-------HHHSCTTEEEEECSC
T ss_pred             --c-cccc-c--ccHHH-------HhhhCCccEEEecCc
Confidence              1 1111 1  12222       234467899998753

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.20  E-value=0.06  Score=41.80  Aligned_cols=99  Identities=15%  Similarity=0.087  Sum_probs=59.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-chhHHhhhhcccCCceEEEEecCCCHH---hhh-----CCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLE---DAL-----TGM  115 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~~g~~~DL~~~~~~~~v~~~~~t~d~~---eal-----~~a  115 (289)
                      ...+|.|+|+ |.||...+..+...|.  +|+.+|.++ ....+.++...   ..+.......+..   +.+     .++
T Consensus        26 ~g~~vlV~G~-G~vG~~~~~~ak~~Ga--~vi~v~~~~~r~~~a~~~ga~---~~~~~~~~~~~~~~~~~~~~~~~g~g~   99 (170)
T d1e3ja2          26 LGTTVLVIGA-GPIGLVSVLAAKAYGA--FVVCTARSPRRLEVAKNCGAD---VTLVVDPAKEEESSIIERIRSAIGDLP   99 (170)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTCS---EEEECCTTTSCHHHHHHHHHHHSSSCC
T ss_pred             CCCEEEEEcc-cccchhhHhhHhhhcc--cccccchHHHHHHHHHHcCCc---EEEeccccccccchhhhhhhcccccCC
Confidence            4458999997 9999999988888885  899999876 22233333211   1111000111111   112     469


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 022947          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (289)
Q Consensus       116 DiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd  167 (289)
                      |+||.++|.+               ..+..   .++-..|.+.+++++.|.+
T Consensus       100 D~vid~~g~~---------------~~~~~---a~~~~~~~G~iv~~G~~~~  133 (170)
T d1e3ja2         100 NVTIDCSGNE---------------KCITI---GINITRTGGTLMLVGMGSQ  133 (170)
T ss_dssp             SEEEECSCCH---------------HHHHH---HHHHSCTTCEEEECSCCSS
T ss_pred             ceeeecCCCh---------------HHHHH---HHHHHhcCCceEEEecCCC
Confidence            9999998632               11122   2333458999999987754

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=96.18  E-value=0.016  Score=48.65  Aligned_cols=152  Identities=20%  Similarity=0.213  Sum_probs=85.4

Q ss_pred             EEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC---chhHHhhhhcccCCceEEEEe-cCCC---H-------HhhhCC
Q 022947           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFL-GQQQ---L-------EDALTG  114 (289)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~---~~g~~~DL~~~~~~~~v~~~~-~t~d---~-------~eal~~  114 (289)
                      |.|+||++-+|..++..|+..|.  .|++.|.+.   .+....++....  .++..+. +-+|   .       .+.+..
T Consensus         4 ~lITGas~GIG~a~a~~la~~Ga--~V~i~~~~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   79 (244)
T d1edoa_           4 VVVTGASRGIGKAIALSLGKAGC--KVLVNYARSAKAAEEVSKQIEAYG--GQAITFGGDVSKEADVEAMMKTAIDAWGT   79 (244)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHHT--CEEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CcEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            67789999999999999999997  888888755   122222222211  1222111 1111   1       222468


Q ss_pred             CCEEEEcCCCCCCCC---Cc---hhhHHHhhH----HHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCC
Q 022947          115 MDIVIIPAGVPRKPG---MT---RDDLFNINA----GIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (289)
Q Consensus       115 aDiVIitag~~~~~g---~~---r~d~~~~N~----~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~  184 (289)
                      -|++|..||......   .+   ....+..|+    ...+.+++.|.+. ..+.|+++|.-...           . +.|
T Consensus        80 iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~IVnisS~~~~-----------~-~~~  146 (244)
T d1edoa_          80 IDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKK-RKGRIINIASVVGL-----------I-GNI  146 (244)
T ss_dssp             CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCTHHH-----------H-CCT
T ss_pred             CCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHc-CCcEEEEEcChhhc-----------C-CCC
Confidence            999999998754321   11   223444554    4556667766654 46777777643211           1 233


Q ss_pred             CCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       185 ~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                      ..-.++.+.-.-..|-+.+|.+++  +..|++-++
T Consensus       147 ~~~~Y~asKaal~~ltk~lA~el~--~~gIrvN~I  179 (244)
T d1edoa_         147 GQANYAAAKAGVIGFSKTAAREGA--SRNINVNVV  179 (244)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHH--TTTEEEEEE
T ss_pred             CCHHHHHHHHHHHHChHHHHHHHh--hhCcEEEEE
Confidence            333333433233456777888874  555665544

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=96.15  E-value=0.0059  Score=49.50  Aligned_cols=95  Identities=19%  Similarity=0.191  Sum_probs=60.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      ..++|+|+|. |.+|..++..+..-+.  +|..+|.... .....+..       +..   ..++++.+++||+|+++..
T Consensus        43 ~~~~vgiiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~~~~~-------~~~---~~~l~~~l~~sD~v~~~~p  109 (188)
T d2naca1          43 EAMHVGTVAA-GRIGLAVLRRLAPFDV--HLHYTDRHRLPESVEKELN-------LTW---HATREDMYPVCDVVTLNCP  109 (188)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGTC--EEEEECSSCCCHHHHHHHT-------CEE---CSSHHHHGGGCSEEEECSC
T ss_pred             cccceeeccc-cccchhhhhhhhccCc--eEEEEeecccccccccccc-------ccc---cCCHHHHHHhccchhhccc
Confidence            4569999998 9999999998887777  8999998652 21111111       111   2357789999999999853


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCC
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNP  165 (289)
                      ...   .++. +  -|.       +.++...|++++|+++--
T Consensus       110 lt~---~T~~-l--i~~-------~~l~~mk~ga~lIN~aRG  138 (188)
T d2naca1         110 LHP---ETEH-M--IND-------ETLKLFKRGAYIVNTARG  138 (188)
T ss_dssp             CCT---TTTT-C--BSH-------HHHTTSCTTEEEEECSCG
T ss_pred             ccc---cchh-h--hHH-------HHHHhCCCCCEEEecCch
Confidence            221   1111 1  121       223344578999997643

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=96.12  E-value=0.015  Score=45.42  Aligned_cols=68  Identities=15%  Similarity=0.203  Sum_probs=42.1

Q ss_pred             CCEEEEEcCCCccHHH-HHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           46 GFKVAVLGAAGGIGQP-LAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~-la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      ++||+|||+ |.+|.. ....+...+-+.-+.++|.++.....  +.... ...  .   .+++++.+++.|+|+++.
T Consensus         1 Kiri~iIG~-G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~--~~~~~-~~~--~---~~~~~~l~~~~D~V~I~t   69 (164)
T d1tlta1           1 KLRIGVVGL-GGIAQKAWLPVLAAASDWTLQGAWSPTRAKALP--ICESW-RIP--Y---ADSLSSLAASCDAVFVHS   69 (164)
T ss_dssp             CEEEEEECC-STHHHHTHHHHHHSCSSEEEEEEECSSCTTHHH--HHHHH-TCC--B---CSSHHHHHTTCSEEEECS
T ss_pred             CCEEEEEcC-CHHHHHHHHHHHHhCCCcEEEEEEechhHhhhh--hhhcc-ccc--c---cccchhhhhhcccccccc
Confidence            469999998 999975 45566655444445688887632221  11110 011  1   235667679999999874

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=96.09  E-value=0.0027  Score=52.58  Aligned_cols=34  Identities=18%  Similarity=0.298  Sum_probs=31.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .+||+|||| |..|.++|..|++.|+  +++++|.++
T Consensus         4 ~~kV~IiGa-G~aGl~~A~~L~~~G~--~v~v~Er~~   37 (265)
T d2voua1           4 TDRIAVVGG-SISGLTAALMLRDAGV--DVDVYERSP   37 (265)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCcEEEECc-CHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            469999999 9999999999999998  999999754

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.08  E-value=0.029  Score=48.53  Aligned_cols=114  Identities=17%  Similarity=0.261  Sum_probs=67.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-------hhH----HhhhhcccCCceEEEEecCCCH-------
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-------PGV----TADISHMDTNAVVRGFLGQQQL-------  108 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-------~g~----~~DL~~~~~~~~v~~~~~t~d~-------  108 (289)
                      +.+.|+||++-+|..+|..|+..|.  .|++.|++..       ...    ..++.... ..........++.       
T Consensus         8 KvalITGas~GIG~aiA~~la~~Ga--~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~v~~~   84 (302)
T d1gz6a_           8 RVVLVTGAGGGLGRAYALAFAERGA--LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRG-GKAVANYDSVEAGEKLVKTA   84 (302)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTT-CEEEEECCCGGGHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCchhhhhhhhHHHHHHHHHHHhhcc-cccccccchHHHHHHHHHHH
Confidence            4688889999999999999999998  8999998641       111    11222111 1111111111122       


Q ss_pred             HhhhCCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 022947          109 EDALTGMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       109 ~eal~~aDiVIitag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      .+.+...|++|..||......   .+   ....+..|+.    ..+.+.+.|++.. .+.||+++.
T Consensus        85 ~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IV~isS  149 (302)
T d1gz6a_          85 LDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQN-YGRIIMTAS  149 (302)
T ss_dssp             HHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             HHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCC-CcEEEEeCC
Confidence            133468999999999754321   12   2234455544    5666777776654 566666653

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.08  E-value=0.011  Score=47.87  Aligned_cols=91  Identities=24%  Similarity=0.365  Sum_probs=60.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      .++|+|+|. |.+|..++..+..-|.  +|..+|.......    .+     ...    ..++++.++.||+|+++....
T Consensus        44 ~~~vgiiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~----~~-----~~~----~~~l~ell~~sDii~i~~plt  107 (188)
T d1sc6a1          44 GKKLGIIGY-GHIGTQLGILAESLGM--YVYFYDIENKLPL----GN-----ATQ----VQHLSDLLNMSDVVSLHVPEN  107 (188)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCCCC----TT-----CEE----CSCHHHHHHHCSEEEECCCSS
T ss_pred             ceEEEEeec-ccchhhhhhhcccccc--eEeeccccccchh----hh-----hhh----hhhHHHHHhhccceeecccCC
Confidence            459999998 9999999998887887  9999997542100    00     111    135788899999999986432


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCC
Q 022947          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNP  165 (289)
                      ..   ++. +  -|.       +.++...+++++|+++=.
T Consensus       108 ~~---T~~-l--i~~-------~~l~~mk~~a~lIN~aRG  134 (188)
T d1sc6a1         108 PS---TKN-M--MGA-------KEISLMKPGSLLINASRG  134 (188)
T ss_dssp             TT---TTT-C--BCH-------HHHHHSCTTEEEEECSCS
T ss_pred             cc---hhh-h--ccH-------HHHhhCCCCCEEEEcCcH
Confidence            11   111 1  122       224445689999998643

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=96.04  E-value=0.002  Score=53.08  Aligned_cols=33  Identities=24%  Similarity=0.269  Sum_probs=30.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      |||+|||| |..|.+.|..|++.|+  +|.++|..+
T Consensus         1 m~V~IIGa-G~aGL~aA~~L~~~G~--~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGG-GISGLAVAHHLRSRGT--DAVLLESSA   33 (347)
T ss_dssp             CCEEEECC-BHHHHHHHHHHHTTTC--CEEEECSSS
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCC--CEEEEecCC
Confidence            68999998 9999999999999998  899999765

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.94  E-value=0.0051  Score=46.31  Aligned_cols=35  Identities=11%  Similarity=0.160  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .++|++|||| |++|.-+|..|...|.  +|.+++..+
T Consensus        22 ~p~~~vIiG~-G~ig~E~A~~l~~lG~--~Vtii~~~~   56 (122)
T d1v59a2          22 IPKRLTIIGG-GIIGLEMGSVYSRLGS--KVTVVEFQP   56 (122)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCCeEEEECC-CchHHHHHHHHHhhCc--ceeEEEecc
Confidence            4579999999 9999999999999887  999999866

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.92  E-value=0.022  Score=47.86  Aligned_cols=157  Identities=18%  Similarity=0.153  Sum_probs=80.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC---chhHHhhhhcccCCceEEEEe-cCCC----------HHhh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFL-GQQQ----------LEDA  111 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~---~~g~~~DL~~~~~~~~v~~~~-~t~d----------~~ea  111 (289)
                      .+.+.|+||++-+|..+|..|+..|.  +|++.+...   .+....++....  .++..+. +-+|          ..+.
T Consensus         6 GK~alITGas~GIG~aia~~la~~G~--~Vvi~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~~~   81 (259)
T d1ja9a_           6 GKVALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKLG--AQGVAIQADISKPSEVVALFDKAVSH   81 (259)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEcCCChHHHHHHHHHHHHcC--CCceEecCCCCCHHHHHHHHHHHHHH
Confidence            34788999999999999999999998  888866554   122223333321  1222111 1111          1223


Q ss_pred             hCCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCC
Q 022947          112 LTGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (289)
Q Consensus       112 l~~aDiVIitag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~~~  184 (289)
                      +..-|++|..+|......   .+   ....+..|+...-.+++.+.++. .++.+++++......           .++|
T Consensus        82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~~~-----------~~~~  150 (259)
T d1ja9a_          82 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVM-----------TGIP  150 (259)
T ss_dssp             HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTC-----------CSCC
T ss_pred             cCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccccccccc-----------cCCC
Confidence            457999999998743221   11   22345556554444444444332 234444443322111           1222


Q ss_pred             CCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947          185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (289)
Q Consensus       185 ~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~  219 (289)
                      ..-.++.+.---..+-+.+|++++  +..|++-++
T Consensus       151 ~~~~Y~asK~al~~l~r~lA~e~~--~~gIrvN~I  183 (259)
T d1ja9a_         151 NHALYAGSKAAVEGFCRAFAVDCG--AKGVTVNCI  183 (259)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHh--hcCeEEecc
Confidence            221222222223346677888885  455554433

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.045  Score=42.77  Aligned_cols=98  Identities=18%  Similarity=0.190  Sum_probs=59.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcccCCceEEEEecCCCHHhhh--------CCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDAL--------TGM  115 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~~~~~~v~~~~~t~d~~eal--------~~a  115 (289)
                      +..+|.|+|+ |.+|...+..+...|. ..|+.+|.++. ...+.++.-    ..+... ...+..+..        .++
T Consensus        26 ~gd~VlI~G~-G~iG~~~~~~a~~~G~-~~Vi~~d~~~~rl~~a~~~Ga----~~~~~~-~~~~~~~~~~~~~~~~g~g~   98 (171)
T d1pl8a2          26 LGHKVLVCGA-GPIGMVTLLVAKAMGA-AQVVVTDLSATRLSKAKEIGA----DLVLQI-SKESPQEIARKVEGQLGCKP   98 (171)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTTC----SEEEEC-SSCCHHHHHHHHHHHHTSCC
T ss_pred             CCCEEEEECC-CccHHHHHHHHHHcCC-ceEEeccCCHHHHHHHHHhCC----cccccc-cccccccccccccccCCCCc
Confidence            3458999998 9999999988888884 58999998862 222333221    111111 123332222        478


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 022947          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (289)
Q Consensus       116 DiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd  167 (289)
                      |+||.+.|.+               ..+...   +.-..|.+.+++++.|.+
T Consensus        99 Dvvid~~G~~---------------~~~~~a---~~~~~~gG~iv~~G~~~~  132 (171)
T d1pl8a2          99 EVTIECTGAE---------------ASIQAG---IYATRSGGTLVLVGLGSE  132 (171)
T ss_dssp             SEEEECSCCH---------------HHHHHH---HHHSCTTCEEEECSCCCS
T ss_pred             eEEEeccCCc---------------hhHHHH---HHHhcCCCEEEEEecCCC
Confidence            9999998632               112222   222347889888877654

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=95.89  E-value=0.01  Score=49.76  Aligned_cols=37  Identities=19%  Similarity=0.117  Sum_probs=31.8

Q ss_pred             CCCCEEEEEcCCCc--cHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           44 SPGFKVAVLGAAGG--IGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        44 ~~~~KI~IIGaaG~--VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .+.+++.|+||+|.  +|..+|..|+..|.  +|+|.+.++
T Consensus         4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga--~Vil~~~~~   42 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSIAFHIARVAQEQGA--QLVLTGFDR   42 (268)
T ss_dssp             TTTCEEEECCCSSTTCHHHHHHHHHHHTTC--EEEEEECSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHcCC--EEEEEeCCh
Confidence            45678999997664  99999999999997  899999887

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.87  E-value=0.0036  Score=51.34  Aligned_cols=33  Identities=33%  Similarity=0.478  Sum_probs=30.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      +||+|||| |.-|.+.|..|++.|+  +|.++|..+
T Consensus         2 KkV~IIGa-G~aGL~aA~~La~~G~--~V~vlE~~~   34 (373)
T d1seza1           2 KRVAVIGA-GVSGLAAAYKLKIHGL--NVTVFEAEG   34 (373)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTTSC--EEEEECSSS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--CEEEEeCCC
Confidence            58999998 9999999999999998  999999765

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=95.84  E-value=0.036  Score=39.85  Aligned_cols=76  Identities=17%  Similarity=0.294  Sum_probs=53.0

Q ss_pred             cCCCCCCCEEEEEcCCCccHH-HHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEE
Q 022947           40 AKGGSPGFKVAVLGAAGGIGQ-PLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIV  118 (289)
Q Consensus        40 ~~~~~~~~KI~IIGaaG~VGs-~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiV  118 (289)
                      +|+..+.+||-+||. |-+|. ++|..|..+|+  +|...|.... ....+|....  ..+..  +. + .+.++++|+|
T Consensus         2 ~~~~~~~~~ihfiGi-gG~GMs~LA~~L~~~G~--~VsGSD~~~~-~~~~~L~~~G--i~v~~--g~-~-~~~i~~~d~v   71 (96)
T d1p3da1           2 IPEMRRVQQIHFIGI-GGAGMSGIAEILLNEGY--QISGSDIADG-VVTQRLAQAG--AKIYI--GH-A-EEHIEGASVV   71 (96)
T ss_dssp             CCCCTTCCEEEEETT-TSTTHHHHHHHHHHHTC--EEEEEESCCS-HHHHHHHHTT--CEEEE--SC-C-GGGGTTCSEE
T ss_pred             CccchhCCEEEEEEE-CHHHHHHHHHHHHhCCC--EEEEEeCCCC-hhhhHHHHCC--CeEEE--CC-c-cccCCCCCEE
Confidence            355567789999998 88884 56889999999  9999998752 1223344332  23332  22 2 3568999999


Q ss_pred             EEcCCCC
Q 022947          119 IIPAGVP  125 (289)
Q Consensus       119 Iitag~~  125 (289)
                      |.+.++|
T Consensus        72 V~S~AI~   78 (96)
T d1p3da1          72 VVSSAIK   78 (96)
T ss_dssp             EECTTSC
T ss_pred             EECCCcC
Confidence            9998877

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.81  E-value=0.0042  Score=50.04  Aligned_cols=77  Identities=21%  Similarity=0.258  Sum_probs=51.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc----hhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEc
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~----~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIit  121 (289)
                      .++|+|||-|.-||..++.+|++++-  .|.+.|.+..    ......+.+.. ...+..+. .+++++....||+||..
T Consensus        29 GK~vvVIGrS~iVG~Pla~lL~~~ga--TVt~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~lk~~~~~aDIvIsa  104 (171)
T d1edza1          29 GKKCIVINRSEIVGRPLAALLANDGA--TVYSVDVNNIQKFTRGESLKLNKHH-VEDLGEYS-EDLLKKCSLDSDVVITG  104 (171)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTTSC--EEEEECSSEEEEEESCCCSSCCCCE-EEEEEECC-HHHHHHHHHHCSEEEEC
T ss_pred             CCEEEEECCccccHHHHHHHHHHCCC--EEEEeccccccccccccceeeeeec-cccccccc-hhHHhhccccCCEEEEc
Confidence            46899999978899999999998886  7888887541    11112222221 12222221 23467778899999999


Q ss_pred             CCCCC
Q 022947          122 AGVPR  126 (289)
Q Consensus       122 ag~~~  126 (289)
                      +|.|.
T Consensus       105 vG~p~  109 (171)
T d1edza1         105 VPSEN  109 (171)
T ss_dssp             CCCTT
T ss_pred             cCCCc
Confidence            98764

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.75  E-value=0.0036  Score=49.70  Aligned_cols=35  Identities=23%  Similarity=0.303  Sum_probs=31.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      ++||+|||| |..|...|..|++.|+ .+|.++|..+
T Consensus         4 ~~kVaIIGa-GpaGl~aA~~l~~~G~-~~V~v~E~~~   38 (196)
T d1gtea4           4 SAKIALLGA-GPASISCASFLARLGY-SDITIFEKQE   38 (196)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHTTC-CCEEEEESSS
T ss_pred             CCEEEEECC-hHHHHHHHHHHHHCCC-CeEEEEEecC
Confidence            459999999 9999999999999997 3589999876

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=95.74  E-value=0.0057  Score=49.45  Aligned_cols=36  Identities=25%  Similarity=0.323  Sum_probs=32.7

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .+++||+|||| |..|.+.|..|+++|+  +|.|+|..+
T Consensus        41 ~~~k~V~IIGa-GPAGL~AA~~la~~G~--~Vtl~E~~~   76 (179)
T d1ps9a3          41 VQKKNLAVVGA-GPAGLAFAINAAARGH--QVTLFDAHS   76 (179)
T ss_dssp             SSCCEEEEECC-SHHHHHHHHHHHTTTC--EEEEEESSS
T ss_pred             CCCcEEEEECc-cHHHHHHHHHHHhhcc--ceEEEeccC
Confidence            34579999998 9999999999999999  999999876

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=95.72  E-value=0.017  Score=51.20  Aligned_cols=71  Identities=20%  Similarity=0.331  Sum_probs=49.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHh-CCCccEEEEEeCCC--chhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~-~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      ...++|||+ |..+...+..+.. .+ +.+|.++|+++  ....+.++.... ...+..   .+++++++++||+|+.+-
T Consensus       128 a~~l~iiG~-G~QA~~~~~a~~~v~~-i~~V~v~~r~~~~~~~~~~~l~~~~-g~~v~~---~~s~~eav~~ADIi~t~T  201 (340)
T d1x7da_         128 ARKMALIGN-GAQSEFQALAFHKHLG-IEEIVAYDTDPLATAKLIANLKEYS-GLTIRR---ASSVAEAVKGVDIITTVT  201 (340)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHHSC-CCEEEEECSSHHHHHHHHHHHTTCT-TCEEEE---CSSHHHHHTTCSEEEECC
T ss_pred             CceEEEEcc-cHHHHHHHHHHhhhcc-eeeeEEEecChHHHHHHHHhhhhcc-CCCcee---cCCHHHHHhcCCceeecc
Confidence            458999998 9998877765543 45 68999999986  233344454321 234433   357899999999998754

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.68  E-value=0.0053  Score=53.58  Aligned_cols=39  Identities=21%  Similarity=0.282  Sum_probs=33.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-chhHH
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVT   87 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~~g~~   87 (289)
                      .+||+|||| |.-|.+.|..|++.|+  +|.++|.+. .-|.+
T Consensus         2 ~KKI~IIGa-G~sGL~aA~~L~k~G~--~V~viEk~~~iGG~~   41 (314)
T d2bi7a1           2 SKKILIVGA-GFSGAVIGRQLAEKGH--QVHIIDQRDHIGGNS   41 (314)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTC--EEEEEESSSSSSGGG
T ss_pred             CCEEEEECC-cHHHHHHHHHHHhCCC--CEEEEECCCCCcCee
Confidence            569999998 9999999999999987  999999877 34444

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=0.014  Score=46.35  Aligned_cols=88  Identities=17%  Similarity=0.119  Sum_probs=59.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      .++++|+|- |.+|..+|..+...|.  .|..+|+++..+... ..+..   .+      ..+++++..+|+||.+.|..
T Consensus        24 Gk~v~V~Gy-G~iG~g~A~~~rg~G~--~V~v~e~dp~~al~A-~~dG~---~v------~~~~~a~~~adivvtaTGn~   90 (163)
T d1li4a1          24 GKVAVVAGY-GDVGKGCAQALRGFGA--RVIITEIDPINALQA-AMEGY---EV------TTMDEACQEGNIFVTTTGCI   90 (163)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHH-HHTTC---EE------CCHHHHTTTCSEEEECSSCS
T ss_pred             CCEEEEecc-ccccHHHHHHHHhCCC--eeEeeecccchhHHh-hcCce---Ee------eehhhhhhhccEEEecCCCc
Confidence            458999998 9999999999998887  999999987322111 11211   11      13679999999999987643


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      .--          +       .+.+++..+.+++.+++
T Consensus        91 ~vI----------~-------~eh~~~MKdgaIL~N~G  111 (163)
T d1li4a1          91 DII----------L-------GRHFEQMKDDAIVCNIG  111 (163)
T ss_dssp             CSB----------C-------HHHHTTCCTTEEEEECS
T ss_pred             cch----------h-------HHHHHhccCCeEEEEec
Confidence            111          1       12344455788888875

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=95.60  E-value=0.14  Score=42.14  Aligned_cols=32  Identities=16%  Similarity=0.214  Sum_probs=29.4

Q ss_pred             EEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      ..|+||++-+|..++..|++.|.  +|++.|++.
T Consensus         4 AlVTGas~GIG~aia~~la~~G~--~Vvi~~r~~   35 (266)
T d1mxha_           4 AVITGGARRIGHSIAVRLHQQGF--RVVVHYRHS   35 (266)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCc
Confidence            46889999999999999999998  999999886

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.031  Score=46.32  Aligned_cols=35  Identities=26%  Similarity=0.318  Sum_probs=31.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .+.+.|+||++-+|..++..|+..|.  .|++.|+++
T Consensus         5 GKvalITGas~GIG~aia~~la~~G~--~V~~~~r~~   39 (248)
T d2o23a1           5 GLVAVITGGASGLGLATAERLVGQGA--SAVLLDLPN   39 (248)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            44677999999999999999999998  899999987

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=95.58  E-value=0.00087  Score=52.21  Aligned_cols=62  Identities=10%  Similarity=0.059  Sum_probs=34.7

Q ss_pred             EEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      |++||+ |.+|++++..|...+.  .+.+++++.  ....+|.+... ..      ..+.+++++.+|+||++.
T Consensus         2 IgfIG~-G~mg~~l~~~L~~~~~--~~~v~~R~~--~~~~~l~~~~~-~~------~~~~~~~~~~~DiVil~v   63 (153)
T d2i76a2           2 LNFVGT-GTLTRFFLECLKDRYE--IGYILSRSI--DRARNLAEVYG-GK------AATLEKHPELNGVVFVIV   63 (153)
T ss_dssp             CEEESC-CHHHHHHHHTTC------CCCEECSSH--HHHHHHHHHTC-CC------CCSSCCCCC---CEEECS
T ss_pred             EEEEeC-cHHHHHHHHHHHhCCC--EEEEEeCCh--hhhcchhhccc-cc------ccchhhhhccCcEEEEec
Confidence            689998 9999999987755443  234677654  22333333221 00      112357799999999985

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=95.56  E-value=0.009  Score=46.94  Aligned_cols=65  Identities=25%  Similarity=0.278  Sum_probs=39.0

Q ss_pred             CEEEEEcCCCccHHH-HHHHHHhCCCccEEEEEeCCCchh--HHhhhhcccCCceEEEEecCCCHHhhhC-CCCEEEEcC
Q 022947           47 FKVAVLGAAGGIGQP-LAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFLGQQQLEDALT-GMDIVIIPA  122 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~-la~~L~~~g~~~eI~LvD~~~~~g--~~~DL~~~~~~~~v~~~~~t~d~~eal~-~aDiVIita  122 (289)
                      +||+|||+ |.+|.. ....+...+. .+++++|.++...  .+.++..    +.  .   .+|+++.++ +.|+|+++.
T Consensus         2 irvgiiG~-G~~~~~~~~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~----~~--~---~~~~~~ll~~~iD~V~I~t   70 (167)
T d1xeaa1           2 LKIAMIGL-GDIAQKAYLPVLAQWPD-IELVLCTRNPKVLGTLATRYRV----SA--T---CTDYRDVLQYGVDAVMIHA   70 (167)
T ss_dssp             EEEEEECC-CHHHHHTHHHHHTTSTT-EEEEEECSCHHHHHHHHHHTTC----CC--C---CSSTTGGGGGCCSEEEECS
T ss_pred             eEEEEEcC-CHHHHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHhccc----cc--c---cccHHHhcccccceecccc
Confidence            69999998 999976 4555555443 3888999876221  1222211    11  1   134545453 789999874

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.53  E-value=0.094  Score=43.40  Aligned_cols=115  Identities=15%  Similarity=0.154  Sum_probs=64.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHh---CCCccEEEEEeCCCchhH-HhhhhcccCCceEEEEe----cCCCHHhh------
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKI---NPLVSVLHLYDVVNTPGV-TADISHMDTNAVVRGFL----GQQQLEDA------  111 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~---~g~~~eI~LvD~~~~~g~-~~DL~~~~~~~~v~~~~----~t~d~~ea------  111 (289)
                      |++|.|+||++-+|..+|..|+.   .|.  .|++.++++...+ ..++....  .++..+.    ..++.++.      
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~   77 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQ--HLFTTCRNREQAKELEDLAKNH--SNIHILEIDLRNFDAYDKLVADIEG   77 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCS--EEEEEESCTTSCHHHHHHHHHC--TTEEEEECCTTCGGGHHHHHHHHHH
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHhcC--CcEEEEEEEeccHHHHHHHHhhhHH
Confidence            55799999999999999987764   565  8999999873222 22332211  2222211    11122111      


Q ss_pred             ---hCCCCEEEEcCCCCCCCC----Cc---hhhHHHhhH----HHHHHHHHHHHHhC----------CCcEEEEecC
Q 022947          112 ---LTGMDIVIIPAGVPRKPG----MT---RDDLFNINA----GIVKTLCEGIAKCC----------PKAIVNLISN  164 (289)
Q Consensus       112 ---l~~aDiVIitag~~~~~g----~~---r~d~~~~N~----~i~~~i~~~i~~~~----------p~aiviv~tN  164 (289)
                         ....|++|..||.....+    .+   -.+.+..|+    ...+.+.+.|++..          ..+.+++++.
T Consensus        78 ~~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S  154 (248)
T d1snya_          78 VTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSS  154 (248)
T ss_dssp             HHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECC
T ss_pred             HhhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhccccccccccccccccccc
Confidence               245899999999743322    11   122444553    34556666665531          2466666654

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.50  E-value=0.0059  Score=49.04  Aligned_cols=35  Identities=20%  Similarity=0.138  Sum_probs=30.1

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      |||+|||| |++|..+|..|...+.-.+|.+++..+
T Consensus         1 ~KVvIIGg-G~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGS-SHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECS-SHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECC-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            79999999 999999999888765555999998754

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=95.49  E-value=0.0058  Score=47.20  Aligned_cols=35  Identities=26%  Similarity=0.264  Sum_probs=30.4

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      +||.|||| |++|..+|..|...+.-.+|+++|.++
T Consensus         3 krivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           3 RKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            59999999 999999999998876545999999876

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.48  E-value=0.007  Score=50.00  Aligned_cols=35  Identities=17%  Similarity=0.253  Sum_probs=30.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      |+||+|||| |..|.++|..|.+.|+ ..|.++|..+
T Consensus         1 ~~~V~IvGa-G~aGl~~A~~L~~~Gi-~~V~V~Er~~   35 (288)
T d3c96a1           1 PIDILIAGA-GIGGLSCALALHQAGI-GKVTLLESSS   35 (288)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEESSS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCC-CeEEEEeCCC
Confidence            579999999 9999999999999984 3788999865

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=95.41  E-value=0.021  Score=45.65  Aligned_cols=77  Identities=23%  Similarity=0.314  Sum_probs=49.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcc---cCCceEEEE--ecCCCHHhhhCCCCEE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHM---DTNAVVRGF--LGQQQLEDALTGMDIV  118 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~---~~~~~v~~~--~~t~d~~eal~~aDiV  118 (289)
                      +.++|.|+|+ |-+|.++++.|...+. .+|++++++.. .....++.+.   .....+...  ....++.+.+.++|+|
T Consensus        17 ~~k~vlIlGa-GGaarai~~al~~~g~-~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dii   94 (182)
T d1vi2a1          17 KGKTMVLLGA-GGASTAIGAQGAIEGL-KEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADIL   94 (182)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEE
T ss_pred             CCCEEEEECC-cHHHHHHHHHHhhcCC-ceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhccccee
Confidence            3469999998 9999999999988874 69999999762 2222222211   111222221  1112345667899999


Q ss_pred             EEcCC
Q 022947          119 IIPAG  123 (289)
Q Consensus       119 Iitag  123 (289)
                      |.|..
T Consensus        95 IN~Tp   99 (182)
T d1vi2a1          95 TNGTK   99 (182)
T ss_dssp             EECSS
T ss_pred             ccccC
Confidence            99853

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.41  E-value=0.023  Score=45.10  Aligned_cols=70  Identities=11%  Similarity=0.242  Sum_probs=42.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEE-EEeCCCchhHHhhhhcc-cCCceEEEEecCCCHHhhh--CCCCEEEEc
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLH-LYDVVNTPGVTADISHM-DTNAVVRGFLGQQQLEDAL--TGMDIVIIP  121 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~-LvD~~~~~g~~~DL~~~-~~~~~v~~~~~t~d~~eal--~~aDiVIit  121 (289)
                      ++||+|||+ |.+|...+..+...+-+ +|+ ++|+++....  ++... ......+.+   +|+++.+  .+.|+|+++
T Consensus         1 kiki~iIG~-G~~g~~~~~~l~~~~~~-~i~ai~d~~~~~~~--~~~~~~~~~~~~~~~---~~~~~ll~~~~iD~v~I~   73 (184)
T d1ydwa1           1 QIRIGVMGC-ADIARKVSRAIHLAPNA-TISGVASRSLEKAK--AFATANNYPESTKIH---GSYESLLEDPEIDALYVP   73 (184)
T ss_dssp             CEEEEEESC-CTTHHHHHHHHHHCTTE-EEEEEECSSHHHHH--HHHHHTTCCTTCEEE---SSHHHHHHCTTCCEEEEC
T ss_pred             CeEEEEEcC-CHHHHHHHHHHHhCCCC-EEEEEEeCCccccc--cchhccccccceeec---CcHHHhhhccccceeeec
Confidence            369999998 99999998888766543 555 6787652221  11111 111222332   3676665  568999987


Q ss_pred             C
Q 022947          122 A  122 (289)
Q Consensus       122 a  122 (289)
                      .
T Consensus        74 t   74 (184)
T d1ydwa1          74 L   74 (184)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.39  E-value=0.011  Score=43.74  Aligned_cols=35  Identities=17%  Similarity=0.147  Sum_probs=31.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .++||+|||| |++|.-+|..+...|.  +|.+++..+
T Consensus        21 ~p~~v~IiGg-G~ig~E~A~~l~~~G~--~Vtlve~~~   55 (117)
T d1ebda2          21 VPKSLVVIGG-GYIGIELGTAYANFGT--KVTILEGAG   55 (117)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             cCCeEEEECC-Cccceeeeeeeccccc--EEEEEEecc
Confidence            4579999999 9999999999999997  999999766

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.36  E-value=0.01  Score=44.21  Aligned_cols=35  Identities=20%  Similarity=0.233  Sum_probs=31.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .++||+|||| |++|.-+|..|...|.  +|.+++..+
T Consensus        21 ~p~~v~IiGg-G~iG~E~A~~l~~~g~--~Vtlv~~~~   55 (117)
T d1onfa2          21 ESKKIGIVGS-GYIAVELINVIKRLGI--DSYIFARGN   55 (117)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSS
T ss_pred             CCCEEEEECC-chHHHHHHHHHHhccc--cceeeehhc
Confidence            4679999999 9999999999998887  999999865

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.36  E-value=0.0097  Score=44.17  Aligned_cols=34  Identities=32%  Similarity=0.422  Sum_probs=31.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      ++||+|||+ |++|.-+|..|...|.  +|.+++..+
T Consensus        21 p~~vvIiGg-G~ig~E~A~~l~~~G~--~Vtlve~~~   54 (116)
T d1gesa2          21 PERVAVVGA-GYIGVELGGVINGLGA--KTHLFEMFD   54 (116)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCEEEEECC-ChhhHHHHHHhhcccc--EEEEEeecc
Confidence            469999999 9999999999999997  999999876

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.34  E-value=0.011  Score=44.25  Aligned_cols=34  Identities=21%  Similarity=0.313  Sum_probs=31.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .++|+|||+ |++|.-+|..|...|.  +|.+++..+
T Consensus        30 ~~~vvIIGg-G~iG~E~A~~l~~~g~--~Vtli~~~~   63 (121)
T d1d7ya2          30 QSRLLIVGG-GVIGLELAATARTAGV--HVSLVETQP   63 (121)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             CCeEEEECc-chhHHHHHHHhhcccc--eEEEEeecc
Confidence            459999999 9999999999999997  999999876

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.33  E-value=0.0085  Score=52.05  Aligned_cols=36  Identities=22%  Similarity=0.266  Sum_probs=31.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      ++||+|||| |..|.+.|..|+..+...+|++++..+
T Consensus         4 ~KrVaIIGa-G~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           4 IRKIAIIGA-GPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            458999999 999999999888877666999999875

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.32  E-value=0.035  Score=46.90  Aligned_cols=116  Identities=18%  Similarity=0.194  Sum_probs=68.9

Q ss_pred             CCEEE-EEcCCCccHHHHHHHHHhC-CCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEecCCC----------HHhh
Q 022947           46 GFKVA-VLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQ----------LEDA  111 (289)
Q Consensus        46 ~~KI~-IIGaaG~VGs~la~~L~~~-g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~~t~d----------~~ea  111 (289)
                      .++|+ |+||++-+|..+|..|+.. |.  .|++.++++.  +..+.+|............ +-+|          ..+.
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~-Dvs~~~sv~~~~~~~~~~   78 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSG--DVVLTARDVTRGQAAVQQLQAEGLSPRFHQL-DIDDLQSIRALRDFLRKE   78 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS--EEEEEESSHHHHHHHHHHHHHTTCCCEEEEC-CTTCHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHhcCCcEEEEEE-ecCCHHHHHHHHHHHHHh
Confidence            35785 6799999999999988864 65  8999999872  2233344332211111111 1112          2233


Q ss_pred             hCCCCEEEEcCCCCCCC-C--Cch---hhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 022947          112 LTGMDIVIIPAGVPRKP-G--MTR---DDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (289)
Q Consensus       112 l~~aDiVIitag~~~~~-g--~~r---~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tN  164 (289)
                      +..-|++|..||..... .  .+.   ...+..|+.....+++.+...- +.+.+++++.
T Consensus        79 ~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS  138 (275)
T d1wmaa1          79 YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  138 (275)
T ss_dssp             HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             cCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence            46899999999974322 1  112   2245667666666666665543 4677887765

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.32  E-value=0.0034  Score=54.82  Aligned_cols=108  Identities=22%  Similarity=0.261  Sum_probs=65.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHH----hCCCc-----cEEEEEeCCC--chhHHhhhhcc-cCCceEEEEecCCCHHhhhC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMK----INPLV-----SVLHLYDVVN--TPGVTADISHM-DTNAVVRGFLGQQQLEDALT  113 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~----~~g~~-----~eI~LvD~~~--~~g~~~DL~~~-~~~~~v~~~~~t~d~~eal~  113 (289)
                      ..||.|.|| |.-|..++..|.    ..|+.     +.|+++|.+-  .++..-++... ..+.+-.......++.++++
T Consensus        25 d~kiv~~GA-GsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r~~~~~~~k~~~a~~~~~~~~~~L~e~i~  103 (294)
T d1pj3a1          25 EHKILFLGA-GEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVN  103 (294)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHHHHHH
T ss_pred             HcEEEEECc-cHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCCCcccHHHHHHhhccccccchhHHHHHHH
Confidence            358999999 999999887654    33432     5699999865  11111111110 00000000011235777776


Q ss_pred             --CCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcc
Q 022947          114 --GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS  168 (289)
Q Consensus       114 --~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~  168 (289)
                        +.|++|-+.|.+.-              +.+++.+.|.+.+++.+|+-.|||..-
T Consensus       104 ~~kptvliG~S~~~g~--------------ft~evi~~Ma~~~~~PIIFaLSNPt~~  146 (294)
T d1pj3a1         104 ILKPSTIIGVAGAGRL--------------FTPDVIRAMASINERPVIFALSNPTAQ  146 (294)
T ss_dssp             HHCCSEEEECCCSSCC--------------SCHHHHHHHHHHCSSCEEEECCSSGGG
T ss_pred             hcCCceEEEecCCCCc--------------CCHHHHHHHHhcCCCcEEEEccCCCCc
Confidence              88888887654411              125667778889999999999999654

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.0088  Score=49.47  Aligned_cols=35  Identities=20%  Similarity=0.225  Sum_probs=31.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      +..||+|||| |.-|-+.|..|++.|+  +|.+++...
T Consensus         4 ~~~kViVIGa-G~aGL~aA~~L~~~G~--~V~VlEa~~   38 (449)
T d2dw4a2           4 KTGKVIIIGS-GVSGLAAARQLQSFGM--DVTLLEARD   38 (449)
T ss_dssp             CCCEEEEECC-BHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCC--CEEEEeCCC
Confidence            4568999998 9999999999999998  999998765

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.27  E-value=0.037  Score=44.20  Aligned_cols=55  Identities=22%  Similarity=0.413  Sum_probs=41.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      .++|+|||.|..||..++..|++.|-  .|..++...                       .++.+.+++||+||.++|.|
T Consensus        39 Gk~vvVIGrS~iVGrPLa~lL~~~ga--tVt~~~~~t-----------------------~~l~~~~~~aDivi~a~G~~   93 (170)
T d1a4ia1          39 GRHAVVVGRSKIVGAPMHDLLLWNNA--TVTTCHSKT-----------------------AHLDEEVNKGDILVVATGQP   93 (170)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHHTTC--EEEEECTTC-----------------------SSHHHHHTTCSEEEECCCCT
T ss_pred             cceEEEEecCCccchHHHHHHHhccC--ceEEEeccc-----------------------ccHHHHHhhccchhhccccc
Confidence            46899999988999999999999886  777775432                       23445677777777777654

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=95.21  E-value=0.014  Score=46.60  Aligned_cols=71  Identities=14%  Similarity=0.158  Sum_probs=41.3

Q ss_pred             CCCCEEEEEcCCCccHHH-HHHHHHhCCCccEEE-EEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhC--CCCEEE
Q 022947           44 SPGFKVAVLGAAGGIGQP-LAMLMKINPLVSVLH-LYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVI  119 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~-la~~L~~~g~~~eI~-LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~--~aDiVI  119 (289)
                      ++++||+|||+ |.+|.. .+..+...+..-+|+ ++|.++...  .++.+....+  ..+   +++++.++  +.|+|+
T Consensus         1 MkkirigiIG~-G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~--~~~~~~~~~~--~~~---~~~~ell~~~~id~v~   72 (181)
T d1zh8a1           1 LRKIRLGIVGC-GIAARELHLPALKNLSHLFEITAVTSRTRSHA--EEFAKMVGNP--AVF---DSYEELLESGLVDAVD   72 (181)
T ss_dssp             CCCEEEEEECC-SHHHHHTHHHHHHTTTTTEEEEEEECSSHHHH--HHHHHHHSSC--EEE---SCHHHHHHSSCCSEEE
T ss_pred             CCCcEEEEEcC-CHHHHHHHHHHHHhCCCCeEEEEEEeccHhhh--hhhhcccccc--cee---eeeeccccccccceee
Confidence            35679999998 999986 455665543322554 778765222  2222111111  222   46777664  688899


Q ss_pred             EcC
Q 022947          120 IPA  122 (289)
Q Consensus       120 ita  122 (289)
                      ++.
T Consensus        73 I~t   75 (181)
T d1zh8a1          73 LTL   75 (181)
T ss_dssp             ECC
T ss_pred             ccc
Confidence            873

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=95.19  E-value=0.061  Score=44.72  Aligned_cols=119  Identities=16%  Similarity=0.125  Sum_probs=68.7

Q ss_pred             CCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-----chhHHhhhhcccCCceEEEEe-cCCC---HHhh
Q 022947           41 KGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----TPGVTADISHMDTNAVVRGFL-GQQQ---LEDA  111 (289)
Q Consensus        41 ~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-----~~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea  111 (289)
                      -.|++...|.|+||+|-+|..++..|+++|. ..|+|+.++.     ......++...  ..++..+. +-+|   .++.
T Consensus         4 ~~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga-~~vvl~~R~~~~~~~~~~~~~~l~~~--g~~v~~~~~Dv~d~~~~~~~   80 (259)
T d2fr1a1           4 DEWKPTGTVLVTGGTGGVGGQIARWLARRGA-PHLLLVSRSGPDADGAGELVAELEAL--GARTTVAACDVTDRESVREL   80 (259)
T ss_dssp             CCCCCCSEEEEETTTSHHHHHHHHHHHHHTC-SEEEEEESSGGGSTTHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHH
T ss_pred             cccCCcCEEEEECCCcHHHHHHHHHHHHCCC-CEEEEEeCCccCHHHHHHHHHHHHhc--cccccccccccchHHHHHHh
Confidence            3567777899999999999999999999885 4688887653     12222333322  23333321 1112   1111


Q ss_pred             ---h---CCCCEEEEcCCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          112 ---L---TGMDIVIIPAGVPRKPG---MTR---DDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       112 ---l---~~aDiVIitag~~~~~g---~~r---~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                         +   -..|.||+++|......   ++.   ...+..|+.....+.+.+... +.+.++++|
T Consensus        81 ~~~i~~~~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~-~~~~iv~~S  143 (259)
T d2fr1a1          81 LGGIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTREL-DLTAFVLFS  143 (259)
T ss_dssp             HHTSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTS-CCSEEEEEE
T ss_pred             hccccccccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhcc-CCceEeeec
Confidence               1   24788999988754321   111   123456666666666655443 445555554

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.18  E-value=0.014  Score=43.83  Aligned_cols=35  Identities=23%  Similarity=0.267  Sum_probs=31.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      +.+||+|||+ |++|.-+|..|...|.  +|.+++..+
T Consensus        29 ~~k~vvViGg-G~iG~E~A~~l~~~g~--~Vtlie~~~   63 (123)
T d1nhpa2          29 EVNNVVVIGS-GYIGIEAAEAFAKAGK--KVTVIDILD   63 (123)
T ss_dssp             TCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             CCCEEEEECC-hHHHHHHHHHhhccce--EEEEEEecC
Confidence            3569999999 9999999999999998  999998865

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.13  E-value=0.0055  Score=51.73  Aligned_cols=33  Identities=24%  Similarity=0.307  Sum_probs=30.4

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .||+|||| |.+|.++|..|.+.|+  ++.++|..+
T Consensus         3 ~~V~IvGa-Gp~Gl~~A~~L~~~G~--~v~vlE~~~   35 (292)
T d1k0ia1           3 TQVAIIGA-GPSGLLLGQLLHKAGI--DNVILERQT   35 (292)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHHTC--CEEEECSSC
T ss_pred             CCEEEECc-CHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            47999999 9999999999999998  999999865

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=95.10  E-value=0.0075  Score=50.33  Aligned_cols=32  Identities=22%  Similarity=0.364  Sum_probs=29.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      -|+|||| |.+|.++|+.|+++|.  +|+++|.++
T Consensus         6 DvvIIGa-Gi~Gls~A~~La~~G~--~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGG-GIIGSAIAYYLAKENK--NTALFESGT   37 (276)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            3999999 9999999999999997  999999865

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=95.06  E-value=0.027  Score=44.86  Aligned_cols=55  Identities=22%  Similarity=0.485  Sum_probs=43.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      .++|+|||-+..||..++..|.+.+.  .|...+..                       +.++.+.+++||+||.++|.|
T Consensus        37 GK~v~VIGrS~~VG~Pla~lL~~~ga--tVt~~h~~-----------------------t~~l~~~~~~ADivI~a~G~p   91 (166)
T d1b0aa1          37 GLNAVVIGASNIVGRPMSMELLLAGC--TTTVTHRF-----------------------TKNLRHHVENADLLIVAVGKP   91 (166)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTTTC--EEEEECSS-----------------------CSCHHHHHHHCSEEEECSCCT
T ss_pred             cceEEEEeccccccHHHHHHHHHhhc--cccccccc-----------------------cchhHHHHhhhhHhhhhccCc
Confidence            56999999988899999999998886  66666431                       234567788999999988865

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.04  E-value=0.023  Score=47.48  Aligned_cols=38  Identities=21%  Similarity=0.100  Sum_probs=31.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      +++.|.|+||++-+|..++..|+..|....|++.++++
T Consensus         2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~   39 (250)
T d1yo6a1           2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDV   39 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSG
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCH
Confidence            45689999999999999999999988534788888775

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.98  E-value=0.16  Score=43.16  Aligned_cols=115  Identities=14%  Similarity=0.162  Sum_probs=61.3

Q ss_pred             CEEEE-EcCCCccHHHHHHHHHhCCCccEEEEEeC---CC-chhHHhhhhcc--cCCceEEEEe-cCCCH---Hhhh---
Q 022947           47 FKVAV-LGAAGGIGQPLAMLMKINPLVSVLHLYDV---VN-TPGVTADISHM--DTNAVVRGFL-GQQQL---EDAL---  112 (289)
Q Consensus        47 ~KI~I-IGaaG~VGs~la~~L~~~g~~~eI~LvD~---~~-~~g~~~DL~~~--~~~~~v~~~~-~t~d~---~eal---  112 (289)
                      +||++ +||++-+|..+|..|+..|.  .+++++.   +. ......+....  ....++..+. +-+|.   ++.+   
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga--~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~   79 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPS--QSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERV   79 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTT--CCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTC
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCC--CeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhc
Confidence            47765 59999999999999999885  4444443   22 11111111111  0112333221 11222   1111   


Q ss_pred             --CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhH----HHHHHHHHHHHHhCCCcEEEEecC
Q 022947          113 --TGMDIVIIPAGVPRKPG---MT---RDDLFNINA----GIVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       113 --~~aDiVIitag~~~~~g---~~---r~d~~~~N~----~i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                        ...|++|..+|......   .+   -...+..|+    ...+.+.+.|++.. .+.|+++|.
T Consensus        80 ~~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~-~G~Iv~isS  142 (285)
T d1jtva_          80 TEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRG-SGRVLVTGS  142 (285)
T ss_dssp             TTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEEE
T ss_pred             cccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcC-CCceEEEec
Confidence              46899999988653321   11   223445554    45677777777654 566666654

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=94.98  E-value=0.21  Score=41.45  Aligned_cols=32  Identities=28%  Similarity=0.269  Sum_probs=27.5

Q ss_pred             EE-EEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           49 VA-VLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        49 I~-IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      |+ |+||++-+|..+|..|+..|.  +|++.|.+.
T Consensus         4 VAlITGas~GIG~aiA~~la~~Ga--~V~i~~~~~   36 (284)
T d1e7wa_           4 VALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRS   36 (284)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCC
Confidence            54 569989999999999999997  899888765

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=94.95  E-value=0.019  Score=45.35  Aligned_cols=82  Identities=16%  Similarity=0.196  Sum_probs=50.1

Q ss_pred             cccccccccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhH--HhhhhcccCCceEEEEecCCCHH
Q 022947           32 GLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVRGFLGQQQLE  109 (289)
Q Consensus        32 ~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~--~~DL~~~~~~~~v~~~~~t~d~~  109 (289)
                      ||-+.+..+.-..+.++|.|+|+ |-.+.++++.|...|.  +|.+++++..+++  +..+.+.   ..+....  .+ .
T Consensus         4 Gf~~~l~~~~~~~~~k~vlIlGa-GGaarai~~al~~~g~--~i~I~nRt~~ka~~l~~~~~~~---~~~~~~~--~~-~   74 (170)
T d1nyta1           4 GLLSDLERLSFIRPGLRILLIGA-GGASRGVLLPLLSLDC--AVTITNRTVSRAEELAKLFAHT---GSIQALS--MD-E   74 (170)
T ss_dssp             HHHHHHHHHTCCCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHHHHHHHHTGGG---SSEEECC--SG-G
T ss_pred             HHHHHHHHcCCCCCCCEEEEECC-cHHHHHHHHHhcccce--EEEeccchHHHHHHHHHHHhhc---ccccccc--cc-c
Confidence            34444433322234579999998 9999999999999886  7999988653222  2222221   2333321  11 1


Q ss_pred             hhhCCCCEEEEcC
Q 022947          110 DALTGMDIVIIPA  122 (289)
Q Consensus       110 eal~~aDiVIita  122 (289)
                      ....++|+||.|.
T Consensus        75 ~~~~~~dliIN~T   87 (170)
T d1nyta1          75 LEGHEFDLIINAT   87 (170)
T ss_dssp             GTTCCCSEEEECC
T ss_pred             ccccccceeeccc
Confidence            2357899999984

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.88  E-value=0.1  Score=43.46  Aligned_cols=115  Identities=18%  Similarity=0.149  Sum_probs=61.8

Q ss_pred             EEEEE-cCCCccHHHHHHHHHh---CCCccEEEEEeCCC--chhHHhhhhcccCCceEEEEec-CCCH---Hhhh-----
Q 022947           48 KVAVL-GAAGGIGQPLAMLMKI---NPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQL---EDAL-----  112 (289)
Q Consensus        48 KI~II-GaaG~VGs~la~~L~~---~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d~---~eal-----  112 (289)
                      ||+|| ||++-+|..+|..|++   .|.  .|++.|+++  .+....+|.......++..+.. -++.   ++.+     
T Consensus         7 KvalITGas~GIG~aiA~~lA~~~~~G~--~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~~~~   84 (259)
T d1oaaa_           7 AVCVLTGASRGFGRALAPQLARLLSPGS--VMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRE   84 (259)
T ss_dssp             EEEEESSCSSHHHHHHHHHHHTTBCTTC--EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHhcccCCC--EEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence            55555 9999999999999985   566  999999976  2333344433222223333221 1221   1111     


Q ss_pred             ------CCCCEEEEcCCCCCC--CC----Cc---hhhHHHhhHHHHHHHHHHHHHhC-----CCcEEEEecC
Q 022947          113 ------TGMDIVIIPAGVPRK--PG----MT---RDDLFNINAGIVKTLCEGIAKCC-----PKAIVNLISN  164 (289)
Q Consensus       113 ------~~aDiVIitag~~~~--~g----~~---r~d~~~~N~~i~~~i~~~i~~~~-----p~aiviv~tN  164 (289)
                            -+.|++|..+|....  .+    .+   -...+..|+.....+++.+..+-     +.+.|++++.
T Consensus        85 ~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS  156 (259)
T d1oaaa_          85 LPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISS  156 (259)
T ss_dssp             SCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECC
T ss_pred             hhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCccccccccc
Confidence                  134577777775321  11    12   22345667665555555544432     2456666653

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=94.88  E-value=0.0095  Score=47.27  Aligned_cols=33  Identities=24%  Similarity=0.336  Sum_probs=29.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      ||+|||| |..|.+.|..|.+.|+ .+|+++|..+
T Consensus         2 ~V~IIGa-G~aGL~aA~~L~~~G~-~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGA-GMSGISAAKRLSEAGI-TDLLILEATD   34 (347)
T ss_dssp             CEEEECC-BHHHHHHHHHHHHTTC-CCEEEECSSS
T ss_pred             CEEEECC-cHHHHHHHHHHHhCCC-CcEEEEECCC
Confidence            8999999 9999999999999995 2699999865

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.88  E-value=0.012  Score=44.19  Aligned_cols=56  Identities=16%  Similarity=0.135  Sum_probs=40.0

Q ss_pred             CccccccccccccccccccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           22 PTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      |-+.++|...+-++..=.++  ..+.+++|||+ |++|.-+|..+...|.  +|.++...+
T Consensus         3 Pgi~~d~~~v~ts~~~l~l~--~~p~~~viiG~-G~iglE~A~~~~~~G~--~Vtvi~~~~   58 (123)
T d1dxla2           3 PGVTIDEKKIVSSTGALALS--EIPKKLVVIGA-GYIGLEMGSVWGRIGS--EVTVVEFAS   58 (123)
T ss_dssp             TTBCCCSSSEECHHHHTTCS--SCCSEEEESCC-SHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             CCCcCCCCeEEeHHHhhCcc--ccCCeEEEEcc-chHHHHHHHHHHhcCC--eEEEEEEcc
Confidence            44555665443333222222  34679999999 9999999999998897  999998866

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=94.86  E-value=0.017  Score=43.88  Aligned_cols=35  Identities=23%  Similarity=0.318  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .++||+|||+ |++|.-+|..|...|.  +|.+++..+
T Consensus        34 ~~k~v~VIGg-G~iG~E~A~~l~~~g~--~Vtvie~~~   68 (133)
T d1q1ra2          34 ADNRLVVIGG-GYIGLEVAATAIKANM--HVTLLDTAA   68 (133)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             cCCEEEEECC-chHHHHHHHHHHhhCc--ceeeeeecc
Confidence            3569999999 9999999999999998  999999866

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.80  E-value=0.022  Score=42.68  Aligned_cols=34  Identities=18%  Similarity=0.089  Sum_probs=31.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      ++||+|||+ |++|.-+|..+...|.  +|.+++..+
T Consensus        22 pk~vvIvGg-G~iG~E~A~~l~~~G~--~Vtlv~~~~   55 (125)
T d3grsa2          22 PGRSVIVGA-GYIAVEMAGILSALGS--KTSLMIRHD   55 (125)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCEEEEEcC-CccHHHHHHHHhcCCc--EEEEEeecc
Confidence            469999999 9999999999999997  999999875

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=94.73  E-value=0.042  Score=44.78  Aligned_cols=103  Identities=15%  Similarity=0.234  Sum_probs=60.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCC-ccEEEEEeCCCchhHHhhhhcccCCceEEE---------------------Eec
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRG---------------------FLG  104 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~-~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~---------------------~~~  104 (289)
                      +||.|||. |.-|..++..+...++ ..+.+.+|.|.   +.+  .......++..                     ...
T Consensus         1 ~kI~viGv-GGaG~n~v~~l~~~~~~~v~~iainTD~---~~L--~~~~a~~ki~iG~~~t~G~G~g~~p~~g~~aa~e~   74 (194)
T d1w5fa1           1 LKIKVIGV-GGAGNNAINRMIEIGIHGVEFVAVNTDL---QVL--EASNADVKIQIGENITRGLGAGGRPEIGEQAALES   74 (194)
T ss_dssp             CCEEEEEE-HHHHHHHHHHHHHHCCTTEEEEEEESCH---HHH--HTCCCSEEEECCTTTTTTSCCTTCHHHHHHHHHHT
T ss_pred             CeEEEEEe-CchHHHHHHHHHHcCCCceEEEEEcCCH---HHH--hcCCcceEEecccccCCCcccccCchhhHhHHHHH
Confidence            58999999 9999999988877664 24788888764   111  21111111110                     000


Q ss_pred             CCCHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 022947          105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV  166 (289)
Q Consensus       105 t~d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPv  166 (289)
                      .....+.+.++|+||++||.....|       ..-.+++.++++.   +. --.+-++|=|-
T Consensus        75 ~~~I~~~l~~~d~vfi~AGlGGgTG-------tgaapviA~~ake---~g-~lvv~ivtlPF  125 (194)
T d1w5fa1          75 EEKIREVLQDTHMVFITAGFGGGTG-------TGASPVIAKIAKE---MG-ILTVAIVTTPF  125 (194)
T ss_dssp             HHHHHHHTTTCSEEEEEEETTSSHH-------HHHHHHHHHHHHH---TT-CEEEEEEEECC
T ss_pred             HHHHHHHhcCCCeEEEEEecCCCcc-------cchHHHHHHHHHH---cC-CceEEEEeech
Confidence            1245677899999999998764332       1234555555554   32 22344556665

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.60  E-value=0.012  Score=41.02  Aligned_cols=33  Identities=21%  Similarity=0.212  Sum_probs=29.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      ++|+|+|+ |+.|+.++.....-|+  +++.+|.++
T Consensus         2 k~vgIlG~-GQLgrMl~~Aa~~LG~--~v~vldp~~   34 (78)
T d3etja2           2 KQVCVLGN-GQLGRMLRQAGEPLGI--AVWPVGLDA   34 (78)
T ss_dssp             EEEEEEBC-SHHHHHHHHHHGGGTE--EEEEECTTS
T ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCC--EEEEEcCCC
Confidence            58999998 9999999988888888  999999876

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.57  E-value=0.016  Score=42.70  Aligned_cols=36  Identities=17%  Similarity=0.218  Sum_probs=31.8

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      ..+.|++|+|+ |++|.-+|..|...|.  +|.+++..+
T Consensus        19 ~~p~~vvIiGg-G~~G~E~A~~l~~~g~--~Vtlve~~~   54 (115)
T d1lvla2          19 ALPQHLVVVGG-GYIGLELGIAYRKLGA--QVSVVEARE   54 (115)
T ss_dssp             SCCSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             cCCCeEEEECC-CHHHHHHHHHHhhccc--ceEEEeeec
Confidence            34579999999 9999999999999887  999999865

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.53  E-value=0.017  Score=45.03  Aligned_cols=98  Identities=18%  Similarity=0.259  Sum_probs=58.7

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-chhHHhhhhcccCCceEEEEecCCCHHhh----hCCCCEE
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDA----LTGMDIV  118 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~~g~~~DL~~~~~~~~v~~~~~t~d~~ea----l~~aDiV  118 (289)
                      ++..+|.|+|+ |.+|...+..+...|.  +|+.+|.++ ....+.++..    ..+-.. ..++..+.    ..+.|.+
T Consensus        26 ~~g~~VlV~Ga-G~vG~~~~~~ak~~G~--~Vi~~~~~~~~~~~a~~~Ga----~~~i~~-~~~~~~~~~~~~~~g~~~~   97 (166)
T d1llua2          26 RPGQWVAISGI-GGLGHVAVQYARAMGL--HVAAIDIDDAKLELARKLGA----SLTVNA-RQEDPVEAIQRDIGGAHGV   97 (166)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTC----SEEEET-TTSCHHHHHHHHHSSEEEE
T ss_pred             CCCCEEEEeec-cccHHHHHHHHHHcCC--ccceecchhhHHHhhhccCc----cccccc-cchhHHHHHHHhhcCCccc
Confidence            34568999998 9999999988888885  899999876 2223333321    111111 12233333    3566777


Q ss_pred             EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 022947          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (289)
Q Consensus       119 Iitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd  167 (289)
                      |++.+.+               +.+.   ..++-..|.+.+++++.|-+
T Consensus        98 i~~~~~~---------------~~~~---~~~~~l~~~G~iv~~G~~~~  128 (166)
T d1llua2          98 LVTAVSN---------------SAFG---QAIGMARRGGTIALVGLPPG  128 (166)
T ss_dssp             EECCSCH---------------HHHH---HHHTTEEEEEEEEECCCCSS
T ss_pred             ccccccc---------------hHHH---HHHHHhcCCcEEEEEEecCC
Confidence            7775422               1122   22333458899998876644

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.44  E-value=0.028  Score=41.60  Aligned_cols=34  Identities=21%  Similarity=0.290  Sum_probs=30.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      ..||+|+|+ |+.|..++......|+  +++.+|.++
T Consensus        11 ~~kigIlGg-GQL~rMla~aA~~lG~--~v~v~d~~~   44 (111)
T d1kjqa2          11 ATRVMLLGS-GELGKEVAIECQRLGV--EVIAVDRYA   44 (111)
T ss_dssp             CCEEEEESC-SHHHHHHHHHHHTTTC--EEEEEESST
T ss_pred             CCEEEEEeC-CHHHHHHHHHHHHCCC--EEEEEcCCC
Confidence            459999998 9999999999888898  999999876

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.40  E-value=0.019  Score=42.93  Aligned_cols=34  Identities=18%  Similarity=-0.040  Sum_probs=30.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      +.|++|||| |++|.-+|..+...|.  +|.++..++
T Consensus        20 P~~vvIIGg-G~iG~E~A~~l~~lG~--~Vtii~~~~   53 (122)
T d1h6va2          20 PGKTLVVGA-SYVALECAGFLAGIGL--DVTVMVRSI   53 (122)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             CCeEEEECC-CccHHHHHHHHhhcCC--eEEEEEech
Confidence            458999999 9999999999999887  888998765

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=94.35  E-value=0.05  Score=47.37  Aligned_cols=107  Identities=16%  Similarity=0.251  Sum_probs=62.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHh----CCCc-----cEEEEEeCCC--chhHHhhhhcccCCceEEEEecCCCHHhhhCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKI----NPLV-----SVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTG  114 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~----~g~~-----~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~  114 (289)
                      ..||.|.|| |.-|..++..|..    .|+.     +.++++|.+-  .... .|+..... ...+......++.+.++.
T Consensus        25 d~kivi~GA-GaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Glv~~~r-~d~~~~k~-~~a~~~~~~~~l~~~i~~  101 (308)
T d1o0sa1          25 QEKYLFFGA-GAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNR-KEMNPRHV-QFAKDMPETTSILEVIRA  101 (308)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTC-SSCCGGGT-TTCBSSCCCCCHHHHHHH
T ss_pred             HcEEEEECc-CHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCCccCCC-cccCHHHH-HHHHhcccCCcHHHHHhc
Confidence            358999999 9999998876543    3432     3599999865  1111 23322110 000000112245555543


Q ss_pred             C--CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCccc
Q 022947          115 M--DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNST  169 (289)
Q Consensus       115 a--DiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~  169 (289)
                      +  +++|-+.+.+   |-     +      .+++.+.|.+.+++.+|+-.|||...+
T Consensus       102 ~kptvliG~s~~~---g~-----f------t~evv~~Ma~~~~~PIIFaLSNPtp~~  144 (308)
T d1o0sa1         102 ARPGALIGASTVR---GA-----F------NEEVIRAMAEINERPIIFALSNPTSKA  144 (308)
T ss_dssp             HCCSEEEECSSCT---TC-----S------CHHHHHHHHHHCSSCEEEECCSSGGGC
T ss_pred             cccccEEeccccc---CC-----C------CHHHHHHHHhhCCCcEEEEccCCCCCC
Confidence            3  4666655443   21     1      245567788899999999999997643

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=94.29  E-value=0.13  Score=42.59  Aligned_cols=101  Identities=23%  Similarity=0.254  Sum_probs=65.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chh--------HHhhhhcccCCceEEEEecCCCHHhhhCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPG--------VTADISHMDTNAVVRGFLGQQQLEDALTGM  115 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g--------~~~DL~~~~~~~~v~~~~~t~d~~eal~~a  115 (289)
                      ..||.+.|| |..|..++..|...+. ++++++|.+-  ...        ...++.+......     ...++.++++++
T Consensus        26 d~riv~~GA-GsAg~gia~~l~~~~~-~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~l~g~   98 (222)
T d1vl6a1          26 EVKVVVNGI-GAAGYNIVKFLLDLGV-KNVVAVDRKGILNENDPETCLNEYHLEIARITNPER-----LSGDLETALEGA   98 (222)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHHTC-CEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTC-----CCSCHHHHHTTC
T ss_pred             hcEEEEECh-HHHHHHHHHHHHHhcc-cceEeecceeEEEcCcccccccHHHHHHHhhhcchh-----hhcchHhhccCc
Confidence            469999998 9999999988887764 6999999874  111        1111121111111     123678899999


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHH
Q 022947          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP  171 (289)
Q Consensus       116 DiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~  171 (289)
                      ++++-+..    +|.-+.              +.|++.++..+|+-.|||..-..+
T Consensus        99 ~~~~g~~~----~~~~~~--------------e~m~~~~~rPIIFpLSNPt~~~e~  136 (222)
T d1vl6a1          99 DFFIGVSR----GNILKP--------------EWIKKMSRKPVIFALANPVPEIDP  136 (222)
T ss_dssp             SEEEECSC----SSCSCH--------------HHHTTSCSSCEEEECCSSSCSSCH
T ss_pred             ceeccccc----cccccH--------------HHHhhcCCCCEEEecCCCccchhh
Confidence            98776542    222111              246667889999999999876653

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=94.27  E-value=0.021  Score=44.97  Aligned_cols=36  Identities=22%  Similarity=0.423  Sum_probs=24.7

Q ss_pred             CCCEEEEEcCCCccHHHHH-HHHHhCCCccEEEEE-eCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLA-MLMKINPLVSVLHLY-DVVN   82 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la-~~L~~~g~~~eI~Lv-D~~~   82 (289)
                      +++||+|||+ |.+|..+. ..|...+.. |++++ |++.
T Consensus         3 kkirvaIIGa-G~ig~~~~~~~l~~~~~~-el~avas~~~   40 (157)
T d1nvmb1           3 QKLKVAIIGS-GNIGTDLMIKVLRNAKYL-EMGAMVGIDA   40 (157)
T ss_dssp             SCEEEEEECC-SHHHHHHHHHHHHHCSSE-EEEEEECSCT
T ss_pred             CCcEEEEEcC-cHHHHHHHHHHHhhCCcc-eEEEEEecch
Confidence            4579999996 99998654 455445544 66554 7665

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.19  E-value=0.034  Score=41.22  Aligned_cols=36  Identities=22%  Similarity=0.262  Sum_probs=31.7

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      ..+.||+|||+ |++|.-+|..+...|.  +|.++...+
T Consensus        20 ~~p~~i~IiG~-G~ig~E~A~~l~~~G~--~Vtiv~~~~   55 (119)
T d3lada2          20 NVPGKLGVIGA-GVIGLELGSVWARLGA--EVTVLEAMD   55 (119)
T ss_dssp             SCCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             cCCCeEEEECC-ChHHHHHHHHHHHcCC--ceEEEEeec
Confidence            34579999999 9999999999999997  999998765

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.17  E-value=0.056  Score=42.38  Aligned_cols=73  Identities=10%  Similarity=0.081  Sum_probs=46.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhccc---CCceEEEEecCCCHHhhhCCCCEEE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD---TNAVVRGFLGQQQLEDALTGMDIVI  119 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~---~~~~v~~~~~t~d~~eal~~aDiVI  119 (289)
                      +..||+++|-...|..+++..+..-|.  ++.++-...  ......+.....   ....+..   +.|+.+++++||+|.
T Consensus         3 ~gl~Ia~VGD~~nv~~Sli~~l~~~g~--~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~ea~~~adviy   77 (163)
T d1pvva2           3 KGVKVVYVGDGNNVAHSLMIAGTKLGA--DVVVATPEGYEPDEKVIKWAEQNAAESGGSFEL---LHDPVKAVKDADVIY   77 (163)
T ss_dssp             TTCEEEEESCCCHHHHHHHHHHHHTTC--EEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEE---ESCHHHHTTTCSEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCC--eEEEecccccCCChHHHHHHHHhhhcccceEEE---ecCHHHHhhhccEEe
Confidence            356999999866677777777777787  899887654  221222111110   1234443   357889999999998


Q ss_pred             EcC
Q 022947          120 IPA  122 (289)
Q Consensus       120 ita  122 (289)
                      .+-
T Consensus        78 ~~~   80 (163)
T d1pvva2          78 TDV   80 (163)
T ss_dssp             ECC
T ss_pred             ecc
Confidence            763

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.15  E-value=0.025  Score=42.08  Aligned_cols=33  Identities=21%  Similarity=0.147  Sum_probs=30.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      ++|+|||+ |++|.-+|..|...|.  +|.+++..+
T Consensus        33 ~~vvIiGg-G~iG~E~A~~l~~~g~--~Vtlv~~~~   65 (122)
T d1xhca2          33 GEAIIIGG-GFIGLELAGNLAEAGY--HVKLIHRGA   65 (122)
T ss_dssp             SEEEEEEC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CcEEEECC-cHHHHHHHHHhhcccc--eEEEEeccc
Confidence            58999999 9999999999999997  999999876

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=94.14  E-value=0.049  Score=43.11  Aligned_cols=88  Identities=22%  Similarity=0.160  Sum_probs=59.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      .++++|+|- |.+|..+|..+...|-  .|..+++++..+... ..+.   ..+      ..++++++.+|++|.+-|..
T Consensus        23 Gk~vvV~GY-G~vGrG~A~~~rg~Ga--~V~V~E~DPi~alqA-~mdG---f~v------~~~~~a~~~aDi~vTaTGn~   89 (163)
T d1v8ba1          23 GKIVVICGY-GDVGKGCASSMKGLGA--RVYITEIDPICAIQA-VMEG---FNV------VTLDEIVDKGDFFITCTGNV   89 (163)
T ss_dssp             TSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSCHHHHHHH-HTTT---CEE------CCHHHHTTTCSEEEECCSSS
T ss_pred             CCEEEEecc-cccchhHHHHHHhCCC--EEEEEecCchhhHHH-HhcC---Ccc------CchhHccccCcEEEEcCCCC
Confidence            458999999 9999999999998886  899999988322111 1221   122      24679999999999987643


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (289)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t  163 (289)
                      .--              -   .+.+++....+++.+++
T Consensus        90 ~vI--------------~---~~h~~~MKdgaIl~N~G  110 (163)
T d1v8ba1          90 DVI--------------K---LEHLLKMKNNAVVGNIG  110 (163)
T ss_dssp             SSB--------------C---HHHHTTCCTTCEEEECS
T ss_pred             ccc--------------c---HHHHHHhhCCeEEEecc
Confidence            110              0   12234445688888876

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.11  E-value=0.061  Score=44.00  Aligned_cols=41  Identities=22%  Similarity=0.288  Sum_probs=34.5

Q ss_pred             ccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           39 RAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        39 ~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      ..+.-...+||+|||| |..|.+.|..|++.|+  ++.++|...
T Consensus        42 ~~~~~~~~k~VvIIGa-GpAGl~aA~~l~~~G~--~v~l~E~~~   82 (233)
T d1djqa3          42 KFRQTKNKDSVLIVGA-GPSGSEAARVLMESGY--TVHLTDTAE   82 (233)
T ss_dssp             CCCCCSSCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             ccCcccCCceEEEEcc-cHHHHHHHHHHHHhcc--ceeeEeecc
Confidence            3333345679999999 9999999999999998  999999866

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=94.08  E-value=0.13  Score=43.20  Aligned_cols=114  Identities=24%  Similarity=0.239  Sum_probs=72.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      ..||++||-   +  .+...+...+.  ++..+|.++..+   |+.             ....++.+..||+||+|+   
T Consensus       122 g~kV~vIG~---~--P~v~~l~~~~~--~~~VlE~~p~~g---d~p-------------~~~~~~lLp~aD~viiTG---  175 (251)
T d2h1qa1         122 GKKVGVVGH---F--PHLESLLEPIC--DLSILEWSPEEG---DYP-------------LPASEFILPECDYVYITC---  175 (251)
T ss_dssp             TSEEEEESC---C--TTHHHHHTTTS--EEEEEESSCCTT---CEE-------------GGGHHHHGGGCSEEEEET---
T ss_pred             CCEEEEEec---c--hhHHHHHhcCC--cEEEEeCCCCCC---CCC-------------chHHHHhhhcCCEEEEEe---
Confidence            469999986   2  45555666665  899999876321   111             123457899999999995   


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHH
Q 022947          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAE  205 (289)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t~lds~R~~~~lA~  205 (289)
                                    ..++..-.+.|-+.++++..+++.-|...+.+.   ++ +   +.-+.+=|+...|..++.+.+++
T Consensus       176 --------------sTlvN~Tl~~LL~~~~~a~~vvl~GPS~p~~P~---lf-~---~Gv~~lag~~v~d~~~~~~~i~~  234 (251)
T d2h1qa1         176 --------------ASVVDKTLPRLLELSRNARRITLVGPGTPLAPV---LF-E---HGLQELSGFMVKDNARAFRIVAG  234 (251)
T ss_dssp             --------------HHHHHTCHHHHHHHTTTSSEEEEESTTCCCCGG---GG-G---TTCSEEEEEEESCHHHHHHHHTT
T ss_pred             --------------chhhcCCHHHHHHhCCcCCEEEEECCCcccCHH---HH-h---cCCceEeEEEEeCHHHHHHHHHc
Confidence                          233444455566677776544456677777653   22 2   33344555667899888888864


Q ss_pred             H
Q 022947          206 V  206 (289)
Q Consensus       206 ~  206 (289)
                      =
T Consensus       235 G  235 (251)
T d2h1qa1         235 A  235 (251)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=94.07  E-value=0.15  Score=35.96  Aligned_cols=69  Identities=25%  Similarity=0.305  Sum_probs=48.9

Q ss_pred             CEEEEEcCCCccHH-HHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947           47 FKVAVLGAAGGIGQ-PLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (289)
Q Consensus        47 ~KI~IIGaaG~VGs-~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~  125 (289)
                      |||=+||- |-+|. .+|..|.+.|+  +|.-.|..+.. ....|....  ..+  +.+ .+ .+.++++|+||.+.+++
T Consensus         2 ~~ihfiGI-gG~GMs~LA~~L~~~G~--~VsGSD~~~~~-~t~~L~~~G--i~i--~~g-h~-~~~i~~~d~vV~SsAI~   71 (89)
T d1j6ua1           2 MKIHFVGI-GGIGMSAVALHEFSNGN--DVYGSNIEETE-RTAYLRKLG--IPI--FVP-HS-ADNWYDPDLVIKTPAVR   71 (89)
T ss_dssp             CEEEEETT-TSHHHHHHHHHHHHTTC--EEEEECSSCCH-HHHHHHHTT--CCE--ESS-CC-TTSCCCCSEEEECTTCC
T ss_pred             cEEEEEeE-CHHHHHHHHHHHHhCCC--eEEEEeCCCCh-hHHHHHHCC--CeE--Eee-ec-ccccCCCCEEEEecCcC
Confidence            79999998 88887 67888999999  99999987621 222344433  122  222 23 36689999999998876

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.06  E-value=0.0084  Score=47.81  Aligned_cols=73  Identities=18%  Similarity=0.288  Sum_probs=46.5

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--hHHhhhhcccCC---ceEEEEecCCCHHhhhCCCCEE
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTN---AVVRGFLGQQQLEDALTGMDIV  118 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g~~~DL~~~~~~---~~v~~~~~t~d~~eal~~aDiV  118 (289)
                      .+.++|.|+|+ |.++.++++.|...+   +|.++.++..+  ..+.++......   ..+..    .++...+.++|+|
T Consensus        16 ~~~k~vlIlGa-GG~arai~~aL~~~~---~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~dli   87 (177)
T d1nvta1          16 VKDKNIVIYGA-GGAARAVAFELAKDN---NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKF----SGLDVDLDGVDII   87 (177)
T ss_dssp             CCSCEEEEECC-SHHHHHHHHHHTSSS---EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEE----ECTTCCCTTCCEE
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHcccc---ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhh----hhhhhccchhhhh
Confidence            34569999998 999999988886544   89999887522  223333322111   12221    2344567899999


Q ss_pred             EEcCCC
Q 022947          119 IIPAGV  124 (289)
Q Consensus       119 Iitag~  124 (289)
                      |.+-..
T Consensus        88 In~tp~   93 (177)
T d1nvta1          88 INATPI   93 (177)
T ss_dssp             EECSCT
T ss_pred             ccCCcc
Confidence            998543

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.03  E-value=0.018  Score=46.52  Aligned_cols=34  Identities=26%  Similarity=0.333  Sum_probs=28.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCC----ccEEEEEeCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPL----VSVLHLYDVV   81 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~----~~eI~LvD~~   81 (289)
                      |||+|||| |-+|.+.|+.|++.|+    +.++.+++..
T Consensus         1 mkV~VIGa-Gi~GlstA~~L~~~G~~v~v~e~~~i~~~~   38 (246)
T d1kifa1           1 MRVVVIGA-GVIGLSTALCIHERYHSVLQPLDVKVYADR   38 (246)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHHTTTSSSCEEEEEESC
T ss_pred             CEEEEECc-hHHHHHHHHHHHHCCCCceEEeeeeecccC
Confidence            79999999 9999999999998764    3467777654

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=93.99  E-value=0.07  Score=41.86  Aligned_cols=95  Identities=18%  Similarity=0.192  Sum_probs=55.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-chhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      +..+|.|.||+|.||......++..|.  +++..+.++ ....+.++.-    ..+..+....+....-+++|+||-+.|
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~--~vi~~~~~~~~~~~~~~lGa----~~~i~~~~~~~~~~~~~g~D~v~d~~G  100 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGL--RVLAAASRPEKLALPLALGA----EEAATYAEVPERAKAWGGLDLVLEVRG  100 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTC--EEEEEESSGGGSHHHHHTTC----SEEEEGGGHHHHHHHTTSEEEEEECSC
T ss_pred             CCCEEEEEeccccchhhhhhhhccccc--cccccccccccccccccccc----ceeeehhhhhhhhhccccccccccccc
Confidence            456899999889999999988888886  778777655 2222232221    122222111111234578999998865


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCC
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNP  165 (289)
                      ..          +          -..++-..|.+.++.+.+|
T Consensus       101 ~~----------~----------~~~~~~l~~~G~~v~~G~~  122 (171)
T d1iz0a2         101 KE----------V----------EESLGLLAHGGRLVYIGAA  122 (171)
T ss_dssp             TT----------H----------HHHHTTEEEEEEEEEC---
T ss_pred             hh----------H----------HHHHHHHhcCCcEEEEeCC
Confidence            11          1          1224444588999888654

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=93.97  E-value=0.076  Score=41.64  Aligned_cols=66  Identities=20%  Similarity=0.271  Sum_probs=43.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      +.+||.|+|+ |-++.++++.|...|. .+|.+++++..++  ..|....  .. ...   ..+  ...++|+||.|-
T Consensus        16 ~~~~vlIlGa-GGaarai~~aL~~~g~-~~I~I~nR~~~ka--~~L~~~~--~~-~~~---~~~--~~~~~DliINaT   81 (167)
T d1npya1          16 KNAKVIVHGS-GGMAKAVVAAFKNSGF-EKLKIYARNVKTG--QYLAALY--GY-AYI---NSL--ENQQADILVNVT   81 (167)
T ss_dssp             TTSCEEEECS-STTHHHHHHHHHHTTC-CCEEEECSCHHHH--HHHHHHH--TC-EEE---SCC--TTCCCSEEEECS
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC-CEEEEecccHHHH--HHHHHhh--hh-hhh---hcc--cccchhhheecc
Confidence            4568999998 9999999999999884 5899998875322  2222211  01 111   111  246899999974

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.92  E-value=0.024  Score=46.12  Aligned_cols=35  Identities=17%  Similarity=0.197  Sum_probs=28.8

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .||+|||| |..|.+.|..|...+.--+|.++|..+
T Consensus         2 ~kv~iIGa-GpaGl~aA~~L~~~~~~~~V~v~e~~~   36 (230)
T d1cjca2           2 PQICVVGS-GPAGFYTAQHLLKHHSRAHVDIYEKQL   36 (230)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred             CeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            49999998 999999998887653323999999876

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=93.89  E-value=0.045  Score=40.18  Aligned_cols=35  Identities=14%  Similarity=0.172  Sum_probs=31.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      +.++|+|||+ |++|.-+|..|...+.  ++.+++..+
T Consensus        21 ~~~~vvVvGg-G~ig~E~A~~l~~~g~--~vt~i~~~~   55 (121)
T d1mo9a2          21 PGSTVVVVGG-SKTAVEYGCFFNATGR--RTVMLVRTE   55 (121)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcch--hheEeeccc
Confidence            3569999999 9999999999998886  999999865

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=93.83  E-value=0.022  Score=48.23  Aligned_cols=33  Identities=21%  Similarity=0.333  Sum_probs=29.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      +|+|||| |-+|.++|+.|+.+|. .+|+|+|.+.
T Consensus         3 dViIIGa-Gi~G~s~A~~La~~G~-~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGA-GIVGTNLADELVTRGW-NNITVLDQGP   35 (305)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTC-CCEEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCC-CcEEEEeCCC
Confidence            7999999 9999999999999884 2799999864

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.81  E-value=0.016  Score=47.08  Aligned_cols=36  Identities=11%  Similarity=0.148  Sum_probs=30.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCC-----ccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~-----~~eI~LvD~~~   82 (289)
                      +.||+|||+ |.-|.+.|+.|+..|+     .-+|.++|..+
T Consensus         2 p~~VaVIGa-GpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           2 PYYIAIVGS-GPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             CcEEEEECc-CHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence            569999998 9999999999988763     13799999876

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.73  E-value=0.084  Score=43.35  Aligned_cols=103  Identities=17%  Similarity=0.257  Sum_probs=58.8

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCC-ccEEEEEeCCCchhHHhhhhcccCCceEEE---------------------Eec
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRG---------------------FLG  104 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~-~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~---------------------~~~  104 (289)
                      .||.|||. |.-|..++..+...++ ..+.+.+|.+.     .+|.+.....++..                     ...
T Consensus        16 ~ki~ViGv-GGaG~n~v~~l~~~~~~~v~~iainTD~-----~~L~~~~~~~ki~ig~~~t~g~Gag~~p~~g~~aa~e~   89 (209)
T d2vapa1          16 AKITVVGC-GGAGNNTITRLKMEGIEGAKTVAINTDA-----QQLIRTKADKKILIGKKLTRGLGAGGNPKIGEEAAKES   89 (209)
T ss_dssp             CCEEEEEE-HHHHHHHHHHHHHHTCTTEEEEEEESBH-----HHHHTSCCSEEEECCTTTTTTBCCTTCHHHHHHHHHHT
T ss_pred             CcEEEEEe-CChHHHHHHHHHHcCCCceEEEEEeCCH-----HHHhcCCcchhcccccccccccccccchHHHHHHHHHH
Confidence            58999999 9999999988877664 24778888764     11111110011110                     000


Q ss_pred             CCCHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 022947          105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV  166 (289)
Q Consensus       105 t~d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPv  166 (289)
                      .....+.++++|+||++||.....|       ..-.+++.++++.   .. .-.+-++|=|-
T Consensus        90 ~~~I~~~l~~~d~vfi~AGlGGGTG-------sgaapvia~~ake---~g-~lvv~ivtlPF  140 (209)
T d2vapa1          90 AEEIKAAIQDSDMVFITCGLGGGTG-------TGSAPVVAEISKK---IG-ALTVAVVTLPF  140 (209)
T ss_dssp             HHHHHHHHTTCSEEEEEEETTSSHH-------HHHHHHHHHHHHH---TT-CEEEEEEEECC
T ss_pred             HHHHHHhccCCCEEEEEEeCCCCcc-------ccHHHHHHHHHHH---cC-CcEEEEEecch
Confidence            0135567899999999998764332       1224555444444   22 22344456665

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=93.72  E-value=0.021  Score=49.65  Aligned_cols=108  Identities=18%  Similarity=0.252  Sum_probs=62.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHh----CCC-----ccEEEEEeCCC-chhHHhhhhcccCCceEEEEecCCCHHhhhCC-
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKI----NPL-----VSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTG-  114 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~----~g~-----~~eI~LvD~~~-~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~-  114 (289)
                      ..||.|.|| |.-|..++..|..    .|+     ...++++|.+- ....-.|+.+... ...+......++.+.++. 
T Consensus        25 d~kiV~~GA-GsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGlv~~~R~~l~~~k~-~~a~~~~~~~~l~~~i~~v  102 (298)
T d1gq2a1          25 DHTVLFQGA-GEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGRASLTPEKE-HFAHEHCEMKNLEDIVKDI  102 (298)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTTCSSCCTTGG-GGCBSCCCCCCHHHHHHHH
T ss_pred             HcEEEEECc-cHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCcccCCCcccCHHHH-HHHHHhhhhhhhHHHhhcc
Confidence            358999998 9999998876642    343     24799999865 1111122322110 000000011234454442 


Q ss_pred             -CCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCccc
Q 022947          115 -MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNST  169 (289)
Q Consensus       115 -aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~  169 (289)
                       .+++|-+.+.+   |-           +.+++.+.|.+.+++.+|+-.|||..-.
T Consensus       103 kptvliG~s~~~---g~-----------ft~evv~~ma~~~~~PIIFaLSNPt~~~  144 (298)
T d1gq2a1         103 KPTVLIGVAAIG---GA-----------FTQQILQDMAAFNKRPIIFALSNPTSKA  144 (298)
T ss_dssp             CCSEEEECSCCT---TC-----------SCHHHHHHHHHHCSSCEEEECCSSGGGC
T ss_pred             ChheeEeccccc---Cc-----------CCHHHHHHHHhhCCCCEEEEccCCCCcC
Confidence             56666665544   21           1234566788889999999999997643

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=93.69  E-value=0.024  Score=47.31  Aligned_cols=34  Identities=24%  Similarity=0.399  Sum_probs=30.8

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .||.|+|+ |.+|+.++..|+..|+ .+|.|+|-+.
T Consensus        31 ~~VliiG~-GglGs~va~~La~~Gv-g~i~lvD~D~   64 (247)
T d1jw9b_          31 SRVLIVGL-GGLGCAASQYLASAGV-GNLTLLDFDT   64 (247)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECCCB
T ss_pred             CCEEEECC-CHHHHHHHHHHHHcCC-CeEEEECCcc
Confidence            48999998 9999999999999995 6999999765

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.64  E-value=0.026  Score=44.44  Aligned_cols=32  Identities=25%  Similarity=0.239  Sum_probs=29.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      -|+|||| |.-|.+.|..|+..|+  +|.++|.++
T Consensus         7 DviViGa-G~~Gl~~A~~La~~G~--~V~vlE~~~   38 (297)
T d2bcgg1           7 DVIVLGT-GITECILSGLLSVDGK--KVLHIDKQD   38 (297)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--CEEEEcCCC
Confidence            3899998 9999999999999998  899999876

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=93.61  E-value=0.049  Score=43.03  Aligned_cols=70  Identities=17%  Similarity=0.217  Sum_probs=46.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--hHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      +.++|.|+|+ |-++.++++.|.+.+  .+|+++.++..+  ..+..+..   ...+.....  + ...+.++|+||.|.
T Consensus        17 ~~k~vlIlGa-GGaarai~~aL~~~~--~~i~I~nR~~~~a~~l~~~~~~---~~~~~~~~~--~-~~~~~~~diiIN~t   87 (171)
T d1p77a1          17 PNQHVLILGA-GGATKGVLLPLLQAQ--QNIVLANRTFSKTKELAERFQP---YGNIQAVSM--D-SIPLQTYDLVINAT   87 (171)
T ss_dssp             TTCEEEEECC-SHHHHTTHHHHHHTT--CEEEEEESSHHHHHHHHHHHGG---GSCEEEEEG--G-GCCCSCCSEEEECC
T ss_pred             CCCEEEEECC-cHHHHHHHHHHcccC--ceeeeccchHHHHHHHHHHHhh---ccccchhhh--c-cccccccceeeecc
Confidence            4568999998 999999999888755  499999987622  22233332   123333221  1 23478999999985


Q ss_pred             C
Q 022947          123 G  123 (289)
Q Consensus       123 g  123 (289)
                      .
T Consensus        88 p   88 (171)
T d1p77a1          88 S   88 (171)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.59  E-value=0.042  Score=42.92  Aligned_cols=71  Identities=20%  Similarity=0.263  Sum_probs=45.5

Q ss_pred             CCEEEEEc-CCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHh-hhhcc--cCCceEEEEecCCCHHhhhCCCCEEE
Q 022947           46 GFKVAVLG-AAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTA-DISHM--DTNAVVRGFLGQQQLEDALTGMDIVI  119 (289)
Q Consensus        46 ~~KI~IIG-aaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~-DL~~~--~~~~~v~~~~~t~d~~eal~~aDiVI  119 (289)
                      ..||+++| +...|-.+++..+..-|.  ++++.-...  ...... .....  .....+..   ++|++++++++|+|.
T Consensus         3 g~ki~~vGD~~nnV~~Sli~~~~~~g~--~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~---~~d~~~ai~~aDviy   77 (161)
T d1vlva2           3 GVKVVFMGDTRNNVATSLMIACAKMGM--NFVACGPEELKPRSDVFKRCQEIVKETDGSVSF---TSNLEEALAGADVVY   77 (161)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHHHTTC--EEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEE---ESCHHHHHTTCSEEE
T ss_pred             CCEEEEEcCCccHHHHHHHHHHHHcCC--EEEEecchhhhhhhhHHHHHHHHHhhcCCceEE---EecHHHhhhhhhhee
Confidence            56999999 435688888888888887  888886543  111111 11111  11234443   457889999999999


Q ss_pred             Ec
Q 022947          120 IP  121 (289)
Q Consensus       120 it  121 (289)
                      ..
T Consensus        78 t~   79 (161)
T d1vlva2          78 TD   79 (161)
T ss_dssp             EC
T ss_pred             cc
Confidence            86

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.57  E-value=0.05  Score=47.48  Aligned_cols=68  Identities=10%  Similarity=0.069  Sum_probs=46.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEc
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIit  121 (289)
                      ..+++|||+ |..+...+..+...-.+.+|.++++++  .+..+.++.+..  ..+..     +..+++++||+|+.+
T Consensus       125 ~~~l~iiGa-G~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~--~~~~~-----~~~~a~~~aDiV~ta  194 (320)
T d1omoa_         125 SSVFGFIGC-GTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRG--ISASV-----QPAEEASRCDVLVTT  194 (320)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTT--CCEEE-----CCHHHHTSSSEEEEC
T ss_pred             ccEEEEecC-cccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcC--Ccccc-----chhhhhccccEEEEe
Confidence            458999998 999998877665533468999999876  233344444322  22221     235889999999876

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=93.57  E-value=0.3  Score=38.29  Aligned_cols=101  Identities=19%  Similarity=0.219  Sum_probs=61.2

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-chhHHhhhhcccCCceEEEEecCC-CHHh-----hhCCCC
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQ-QLED-----ALTGMD  116 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~~g~~~DL~~~~~~~~v~~~~~t~-d~~e-----al~~aD  116 (289)
                      ++..+|+|+|+ |.||...+..+...|. ..|+..|.++ ....+.++....    +......+ ..++     .-.++|
T Consensus        27 ~~G~~VlV~G~-G~iGl~a~~~ak~~Ga-~~Vi~~d~~~~r~~~a~~~Ga~~----~i~~~~~~~~~~~~~~~~~~~G~d  100 (174)
T d1e3ia2          27 TPGSTCAVFGL-GCVGLSAIIGCKIAGA-SRIIAIDINGEKFPKAKALGATD----CLNPRELDKPVQDVITELTAGGVD  100 (174)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHTTCSE----EECGGGCSSCHHHHHHHHHTSCBS
T ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHhCC-ceeeeeccchHHHHHHHHhCCCc----ccCCccchhhhhhhHhhhhcCCCc
Confidence            34568999998 9999999988888883 5889999987 333344443211    11000011 1111     126899


Q ss_pred             EEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCC-cEEEEecCCCcc
Q 022947          117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPK-AIVNLISNPVNS  168 (289)
Q Consensus       117 iVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~-aiviv~tNPvd~  168 (289)
                      +||.+.|.+               ..+.   ..++-..|. +.++++..|.+-
T Consensus       101 ~vie~~G~~---------------~~~~---~a~~~~~~g~G~~v~vG~~~~~  135 (174)
T d1e3ia2         101 YSLDCAGTA---------------QTLK---AAVDCTVLGWGSCTVVGAKVDE  135 (174)
T ss_dssp             EEEESSCCH---------------HHHH---HHHHTBCTTTCEEEECCCSSSE
T ss_pred             EEEEecccc---------------hHHH---HHHHHhhcCCeEEEecCCCCCc
Confidence            999998743               1111   223334564 899888887663

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.45  E-value=0.088  Score=42.10  Aligned_cols=71  Identities=17%  Similarity=0.220  Sum_probs=45.8

Q ss_pred             CCEEEEEc-CCCccHHHHHHHHHhCCCccEEEEEeCCC--c-hhHHhhhhccc--CCceEEEEecCCCHHhhhCCCCEEE
Q 022947           46 GFKVAVLG-AAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGVTADISHMD--TNAVVRGFLGQQQLEDALTGMDIVI  119 (289)
Q Consensus        46 ~~KI~IIG-aaG~VGs~la~~L~~~g~~~eI~LvD~~~--~-~g~~~DL~~~~--~~~~v~~~~~t~d~~eal~~aDiVI  119 (289)
                      ..||+++| +...|..+++..+..-|.  +|.++-...  . .....++....  ....+..   +++++++++++|+|.
T Consensus         5 ~lkia~vGD~~nnV~~Sli~~~~~~G~--~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~eai~~aDvVy   79 (185)
T d1dxha2           5 DISYAYLGDARNNMGNSLLLIGAKLGM--DVRIAAPKALWPHDEFVAQCKKFAEESGAKLTL---TEDPKEAVKGVDFVH   79 (185)
T ss_dssp             GCEEEEESCCSSHHHHHHHHHHHHTTC--EEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEE---ESCHHHHTTTCSEEE
T ss_pred             CCEEEEEcCCcchHHHHHHHHHHHcCC--EEEEEccHHHHhhhHHHHHHHHHhhccCCeEEE---EeChhhccccccEEE
Confidence            46999999 323688888888888887  999996643  1 11111111110  1234443   357889999999988


Q ss_pred             Ec
Q 022947          120 IP  121 (289)
Q Consensus       120 it  121 (289)
                      ..
T Consensus        80 t~   81 (185)
T d1dxha2          80 TD   81 (185)
T ss_dssp             EC
T ss_pred             ee
Confidence            75

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=93.29  E-value=0.031  Score=46.62  Aligned_cols=32  Identities=25%  Similarity=0.381  Sum_probs=29.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      -|+|||| |.+|.++|+.|+++|+  +|+|+|...
T Consensus         5 DvvIIGa-Gi~Gls~A~~La~~G~--~V~viE~~~   36 (281)
T d2gf3a1           5 DVIVVGA-GSMGMAAGYQLAKQGV--KTLLVDAFD   36 (281)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            4899999 9999999999999998  899999754

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.26  E-value=0.025  Score=48.58  Aligned_cols=40  Identities=18%  Similarity=0.145  Sum_probs=33.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-chhHHh
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTA   88 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~~g~~~   88 (289)
                      |.+|+|||| |..|.++|..|++.|.  +|.++|.+. .-|.+.
T Consensus         1 M~dv~IIGa-G~sGl~~A~~L~~~g~--~V~iiEk~~~iGG~~~   41 (298)
T d1i8ta1           1 MYDYIIVGS-GLFGAVCANELKKLNK--KVLVIEKRNHIGGNAY   41 (298)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHGGGTC--CEEEECSSSSSSGGGC
T ss_pred             CccEEEECC-cHHHHHHHHHHHhCCC--cEEEEECCCCcccceE
Confidence            458999998 9999999999998887  899999876 334443

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.20  E-value=0.097  Score=40.70  Aligned_cols=99  Identities=16%  Similarity=0.149  Sum_probs=59.6

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcccCCceEEEEecCCCHH-hhhCCCCEEEEc
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLE-DALTGMDIVIIP  121 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~~~~~~v~~~~~t~d~~-eal~~aDiVIit  121 (289)
                      .+..+|.|+|+ |.+|...+..+...|.  +++.+|.++. ...+.++.-   . .+-......++. +.....|+|+.+
T Consensus        26 ~~g~~vlI~Ga-G~vG~~a~q~ak~~G~--~vi~~~~~~~k~~~a~~lGa---~-~~i~~~~~~~~~~~~~~~~d~vi~~   98 (168)
T d1piwa2          26 GPGKKVGIVGL-GGIGSMGTLISKAMGA--ETYVISRSSRKREDAMKMGA---D-HYIATLEEGDWGEKYFDTFDLIVVC   98 (168)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHHTC--EEEEEESSSTTHHHHHHHTC---S-EEEEGGGTSCHHHHSCSCEEEEEEC
T ss_pred             CCCCEEEEECC-CCcchhHHHHhhhccc--cccccccchhHHHHhhccCC---c-EEeeccchHHHHHhhhcccceEEEE
Confidence            45569999998 9999998888877886  8899998773 333444331   1 111111112332 334678999998


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCC
Q 022947          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNP  165 (289)
                      .|.+.....+                ..++-..|.+.+++++-|
T Consensus        99 ~~~~~~~~~~----------------~~~~~l~~~G~iv~~G~~  126 (168)
T d1piwa2          99 ASSLTDIDFN----------------IMPKAMKVGGRIVSISIP  126 (168)
T ss_dssp             CSCSTTCCTT----------------TGGGGEEEEEEEEECCCC
T ss_pred             ecCCccchHH----------------HHHHHhhccceEEEeccc
Confidence            7654322110                113334588888888543

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=93.11  E-value=0.11  Score=42.30  Aligned_cols=35  Identities=31%  Similarity=0.365  Sum_probs=31.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      +.++|+|-|. |.||+.++..|...|.  .|+..|++.
T Consensus        26 ~gk~v~IqG~-G~VG~~~A~~L~~~Ga--kvvv~d~d~   60 (201)
T d1c1da1          26 DGLTVLVQGL-GAVGGSLASLAAEAGA--QLLVADTDT   60 (201)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEecchH
Confidence            4569999998 9999999999999996  899999875

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=93.09  E-value=0.17  Score=40.07  Aligned_cols=79  Identities=19%  Similarity=0.206  Sum_probs=46.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchh--HHh----hhhcccCCceEE-----EEecCCCHHhhhC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTA----DISHMDTNAVVR-----GFLGQQQLEDALT  113 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g--~~~----DL~~~~~~~~v~-----~~~~t~d~~eal~  113 (289)
                      +++||+|.|- |.+|..++..+..++-..-+.+.|..+...  ...    ++.+.. ...+.     .+....++.+.+.
T Consensus         1 M~irIaINGf-GRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   78 (172)
T d2czca2           1 MKVKVGVNGY-GTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAAS-EEFIPRFEKEGFEVAGTLNDLLE   78 (172)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESS-GGGHHHHHHHTCCCSCBHHHHHT
T ss_pred             CcEEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeeccc-ccceeeecccCccccchhhhhhc
Confidence            3579999998 999999998888776544445556554211  111    111110 00000     0111235667788


Q ss_pred             CCCEEEEcCCCC
Q 022947          114 GMDIVIIPAGVP  125 (289)
Q Consensus       114 ~aDiVIitag~~  125 (289)
                      ++|+|+.|.|..
T Consensus        79 ~vDvViEcTG~f   90 (172)
T d2czca2          79 KVDIIVDATPGG   90 (172)
T ss_dssp             TCSEEEECCSTT
T ss_pred             cCCEEEECCCCC
Confidence            999999997743

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.07  E-value=0.045  Score=41.45  Aligned_cols=28  Identities=21%  Similarity=0.369  Sum_probs=23.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEE
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLH   76 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~   76 (289)
                      |||+|.|++|.+|+.++..+...++  +++
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~--~l~   28 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGH--ELV   28 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEE
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCC--eEE
Confidence            6999999999999999988877776  544

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=92.97  E-value=0.049  Score=44.78  Aligned_cols=71  Identities=15%  Similarity=0.107  Sum_probs=40.7

Q ss_pred             CCEEEEEcCCCccHH-HHHHHHHhCCCccEEEEEeCCCch--hHHhhhhcccCCceEEEEecCCCHHhhhC--CCCEEEE
Q 022947           46 GFKVAVLGAAGGIGQ-PLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVII  120 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs-~la~~L~~~g~~~eI~LvD~~~~~--g~~~DL~~~~~~~~v~~~~~t~d~~eal~--~aDiVIi  120 (289)
                      +.||+|||+ |.+|. .++..+...+.+.=+.++|+++..  ..+.++. .. ...+..   .+|+++.++  +.|+|++
T Consensus        33 ~iriaiIG~-G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~-i~-~~~~~~---~~d~~ell~~~~iD~V~I  106 (221)
T d1h6da1          33 RFGYAIVGL-GKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYG-VD-PRKIYD---YSNFDKIAKDPKIDAVYI  106 (221)
T ss_dssp             CEEEEEECC-SHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTT-CC-GGGEEC---SSSGGGGGGCTTCCEEEE
T ss_pred             CEEEEEEcC-cHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhc-cc-cccccc---cCchhhhcccccceeeee
Confidence            469999998 99997 455555544434334488987622  1222221 11 123332   246666664  6889998


Q ss_pred             cC
Q 022947          121 PA  122 (289)
Q Consensus       121 ta  122 (289)
                      +.
T Consensus       107 ~t  108 (221)
T d1h6da1         107 IL  108 (221)
T ss_dssp             CS
T ss_pred             cc
Confidence            74

>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.95  E-value=0.077  Score=43.26  Aligned_cols=102  Identities=20%  Similarity=0.268  Sum_probs=61.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCC-ccEEEEEeCCCchhHHhhhhcccCCceEEE-------E--------------ecC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRG-------F--------------LGQ  105 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~-~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~-------~--------------~~t  105 (289)
                      +|-|||- |--|..++..+...++ -.+++.+|.|.   +.++....  ..++..       .              ...
T Consensus         3 ~IkViGv-GGaG~n~vn~~~~~~~~~v~~iainTD~---~~L~~~~~--~~ki~iG~~~t~G~Gagg~p~~g~~aa~e~~   76 (198)
T d1rq2a1           3 VIKVVGI-GGGGVNAVNRMIEQGLKGVEFIAINTDA---QALLMSDA--DVKLDVGRDSTRGLGAGADPEVGRKAAEDAK   76 (198)
T ss_dssp             CEEEEEE-HHHHHHHHHHHHHTTCCSEEEEEEESCH---HHHHHCCC--SEEEECCTTTC-----CCCHHHHHHHHHHTH
T ss_pred             eEEEEEe-CchHHHHHHHHHHcCCCCceEEEEcchH---HHHhcCCc--chhhccccccccCCCcCcChhhhHhhHHHHH
Confidence            6789998 9999999998888774 24777787764   11111111  011100       0              011


Q ss_pred             CCHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 022947          106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV  166 (289)
Q Consensus       106 ~d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPv  166 (289)
                      +...+.++++|+||++||.....|       ..=.+++.++++...    --.+-++|-|-
T Consensus        77 ~~I~~~l~~~d~vfi~AGlGGgTG-------tGaaPviA~iake~g----~l~v~ivt~PF  126 (198)
T d1rq2a1          77 DEIEELLRGADMVFVTAGEGGGTG-------TGGAPVVASIARKLG----ALTVGVVTRPF  126 (198)
T ss_dssp             HHHHHHHTTCSEEEEEEETTSSHH-------HHHHHHHHHHHHHHT----CEEEEEEEECC
T ss_pred             HHHHHHhcCCCEEEEEEecCCCCC-------cchHHHHHHHHHHcC----CcEEEEEecCh
Confidence            245677899999999999874433       123667777776642    22345556665

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.91  E-value=0.74  Score=34.79  Aligned_cols=114  Identities=11%  Similarity=0.003  Sum_probs=68.1

Q ss_pred             CCEEEEEcCC---CccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           46 GFKVAVLGAA---GGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        46 ~~KI~IIGaa---G~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      +++|+|||||   +..|..++..|...|+  +|+.+..+..  .   +.-.      ..+   .++.+.-...|+|+++.
T Consensus        19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~--~v~pVnP~~~--~---i~G~------~~~---~sl~dlp~~iD~v~i~v   82 (139)
T d2d59a1          19 YKKIALVGASPKPERDANIVMKYLLEHGY--DVYPVNPKYE--E---VLGR------KCY---PSVLDIPDKIEVVDLFV   82 (139)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTC--EEEEECTTCS--E---ETTE------ECB---SSGGGCSSCCSEEEECS
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHHHCCC--EEEEECCccc--c---cCCC------ccc---ccccccCccceEEEEEe
Confidence            4589999996   5788899999999998  8888865321  1   1111      111   23423234689998873


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-e-eccHHHH
Q 022947          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-T-MLDVVRA  199 (289)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t-~lds~R~  199 (289)
                                      +.+.+.++.+++.+.+++++++.   |-..- .-+.+.+++. |+   +++|= | ..+..||
T Consensus        83 ----------------p~~~~~~~~~e~~~~g~k~v~~~---~G~~~-ee~~~~a~~~-gi---~vig~~C~~v~~~rl  137 (139)
T d2d59a1          83 ----------------KPKLTMEYVEQAIKKGAKVVWFQ---YNTYN-REASKKADEA-GL---IIVANRCMMREHERL  137 (139)
T ss_dssp             ----------------CHHHHHHHHHHHHHHTCSEEEEC---TTCCC-HHHHHHHHHT-TC---EEEESCCHHHHHHHH
T ss_pred             ----------------CHHHHHHHHHHHHHhCCCEEEEe---ccccC-HHHHHHHHHC-CC---EEEcCCcChhhhhhh
Confidence                            34566777777777777766653   32222 2223444443 43   67775 6 4455554

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=92.83  E-value=0.26  Score=38.56  Aligned_cols=75  Identities=19%  Similarity=0.199  Sum_probs=46.5

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcccCCceEEEEecCCC-HHhhh-----CCCC
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQ-LEDAL-----TGMD  116 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~~~~~~v~~~~~t~d-~~eal-----~~aD  116 (289)
                      ++..+|.|+|+ |.+|...+..+...|. .+|+.+|.++. ...+.++.-.    .+-.+...++ .++..     .+.|
T Consensus        26 ~~G~~VlV~Ga-GgvGl~a~~~ak~~G~-~~Vi~~d~~~~kl~~a~~lGa~----~~i~~~~~d~~~~~~~~~~~~~G~d   99 (174)
T d1p0fa2          26 TPGSTCAVFGL-GGVGFSAIVGCKAAGA-SRIIGVGTHKDKFPKAIELGAT----ECLNPKDYDKPIYEVICEKTNGGVD   99 (174)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHHTTCS----EEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred             CCCCEEEEECC-CchhHHHHHHHHHcCC-ceeeccCChHHHHHHHHHcCCc----EEEcCCCchhHHHHHHHHhcCCCCc
Confidence            44568999998 9999999888887774 58999999873 2333333211    1111111111 22222     4799


Q ss_pred             EEEEcCCC
Q 022947          117 IVIIPAGV  124 (289)
Q Consensus       117 iVIitag~  124 (289)
                      +||.+.|.
T Consensus       100 ~vid~~g~  107 (174)
T d1p0fa2         100 YAVECAGR  107 (174)
T ss_dssp             EEEECSCC
T ss_pred             EEEEcCCC
Confidence            99999763

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=92.72  E-value=0.084  Score=41.61  Aligned_cols=96  Identities=18%  Similarity=0.205  Sum_probs=57.9

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcccCCceEEEEecCCCHHhhh------CCCC
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDAL------TGMD  116 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~~~~~~v~~~~~t~d~~eal------~~aD  116 (289)
                      ++..+|+|+|+ |.||...+..+...|. ..|+.+|.++. ...+.++.-.    .+-.+ ...++.+.+      +++|
T Consensus        26 ~~g~~VlI~Ga-G~vGl~~~q~ak~~Ga-~~Vi~~d~~~~r~~~a~~lGa~----~~i~~-~~~~~~~~v~~~t~g~G~D   98 (174)
T d1jqba2          26 EMGSSVVVIGI-GAVGLMGIAGAKLRGA-GRIIGVGSRPICVEAAKFYGAT----DILNY-KNGHIEDQVMKLTNGKGVD   98 (174)
T ss_dssp             CTTCCEEEECC-SHHHHHHHHHHHTTTC-SCEEEECCCHHHHHHHHHHTCS----EEECG-GGSCHHHHHHHHTTTSCEE
T ss_pred             CCCCEEEEEcC-Ccchhhhhhhhhcccc-cccccccchhhhHHHHHhhCcc----ccccc-cchhHHHHHHHHhhccCcc
Confidence            44568999998 9999998888887774 47999998762 2233333211    11111 122333332      4599


Q ss_pred             EEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 022947          117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       117 iVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      +||.++|.+.               .+.+.   ++-..|.+.++++..
T Consensus        99 ~vid~~g~~~---------------~~~~a---~~~~~~~G~iv~~G~  128 (174)
T d1jqba2          99 RVIMAGGGSE---------------TLSQA---VKMVKPGGIISNINY  128 (174)
T ss_dssp             EEEECSSCTT---------------HHHHH---HHHEEEEEEEEECCC
T ss_pred             eEEEccCCHH---------------HHHHH---HHHHhcCCEEEEEee
Confidence            9999987541               11222   223358999888763

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=92.71  E-value=0.064  Score=44.19  Aligned_cols=72  Identities=21%  Similarity=0.291  Sum_probs=44.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCCC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~~  126 (289)
                      -|.|+||++-+|..+|..|+..|.  +|++.|+++.+. ..|+.........  .  .....+.....|+++..||...
T Consensus         3 VvlITGas~GIG~aiA~~la~~Ga--~V~~~~~~~~~~-~~d~~~~~~~~~~--~--~~~~~~~~~~id~lv~~Ag~~~   74 (257)
T d1fjha_           3 IIVISGCATGIGAATRKVLEAAGH--QIVGIDIRDAEV-IADLSTAEGRKQA--I--ADVLAKCSKGMDGLVLCAGLGP   74 (257)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSSSE-ECCTTSHHHHHHH--H--HHHHTTCTTCCSEEEECCCCCT
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECChHHH-HHHhcCHHHHHHH--H--HHHHHHhCCCCcEEEEcCCCCC
Confidence            457789999999999999999998  999999876211 1122211100000  0  0001122356899999988654

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.71  E-value=0.077  Score=42.43  Aligned_cols=75  Identities=20%  Similarity=0.182  Sum_probs=44.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch-hHHhhhhc----ccC-------CceEEEEecCCCHHhhhC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISH----MDT-------NAVVRGFLGQQQLEDALT  113 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~-g~~~DL~~----~~~-------~~~v~~~~~t~d~~eal~  113 (289)
                      |.||+|.|- |.+|..++..+.+++-+.-+.+-|..+.. ...+-..+    ...       ...+.   ...++.+.+.
T Consensus         1 MIKVaINGf-GRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---v~g~~~~~~~   76 (178)
T d1b7go1           1 MVNVAVNGY-GTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIP---VAGTVEDLIK   76 (178)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCC---CCCCHHHHHH
T ss_pred             CeEEEEECC-CHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceecccccee---cCCchhhhhh
Confidence            469999998 99999999988887754334444554421 11110000    000       01111   1235667778


Q ss_pred             CCCEEEEcCCC
Q 022947          114 GMDIVIIPAGV  124 (289)
Q Consensus       114 ~aDiVIitag~  124 (289)
                      ++|+||.|.|.
T Consensus        77 ~vDiViecTG~   87 (178)
T d1b7go1          77 TSDIVVDTTPN   87 (178)
T ss_dssp             HCSEEEECCST
T ss_pred             cCCEEEECCCC
Confidence            99999999764

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=92.59  E-value=0.047  Score=47.02  Aligned_cols=33  Identities=21%  Similarity=0.212  Sum_probs=29.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      ..|+|||| |..|-..|..|.+.|+  +++++|..+
T Consensus         8 ~dV~IIGA-G~sGl~~a~~L~~~G~--~v~i~Ek~~   40 (298)
T d1w4xa1           8 VDVLVVGA-GFSGLYALYRLRELGR--SVHVIETAG   40 (298)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CCEEEECc-cHHHHHHHHHHHhCCC--CEEEEEcCC
Confidence            37999999 9999999999999998  899999754

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.56  E-value=0.35  Score=38.59  Aligned_cols=112  Identities=14%  Similarity=0.133  Sum_probs=60.5

Q ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcccCCceEEEEecCCCHHhhh------CCC
Q 022947           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDAL------TGM  115 (289)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~~~~~~v~~~~~t~d~~eal------~~a  115 (289)
                      -+...+|.|+|+ |.+|...+..++..+. ..|+.+|.++. ...+.++.     ..........++.+.+      .++
T Consensus        23 v~~G~tVlV~Ga-G~vGl~a~~~ak~~ga-~~Vi~~d~~~~rl~~a~~~G-----a~~~~~~~~~~~~~~i~~~t~g~g~   95 (195)
T d1kola2          23 VGPGSTVYVAGA-GPVGLAAAASARLLGA-AVVIVGDLNPARLAHAKAQG-----FEIADLSLDTPLHEQIAALLGEPEV   95 (195)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTT-----CEEEETTSSSCHHHHHHHHHSSSCE
T ss_pred             CCCCCEEEEECc-CHHHHHHHHHHHhhcc-cceeeecccchhhHhhhhcc-----ccEEEeCCCcCHHHHHHHHhCCCCc
Confidence            345669999998 9999888777777663 58999998762 22222221     1111111123333332      479


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 022947          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       116 DiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      |++|.+.|.+........-......+.+.+..   +-..|.+.++++.-
T Consensus        96 D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~---~~~r~gG~v~~~G~  141 (195)
T d1kola2          96 DCAVDAVGFEARGHGHEGAKHEAPATVLNSLM---QVTRVAGKIGIPGL  141 (195)
T ss_dssp             EEEEECCCTTCBCSSTTGGGSBCTTHHHHHHH---HHEEEEEEEEECSC
T ss_pred             EEEEECccccccCCcccceeecCcHHHHHHHH---HHHhcCCEEEEeee
Confidence            99999988553221100000001122222222   22348888888864

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=92.49  E-value=0.14  Score=40.17  Aligned_cols=94  Identities=14%  Similarity=0.145  Sum_probs=56.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcccCCceEEEEecCCCHHh---hh------CCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLED---AL------TGM  115 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~~~~~~v~~~~~t~d~~e---al------~~a  115 (289)
                      ..+|.|+|| |.||...+..+...|. ..|+.+|.++. ...+.++.-    ..+-.. ..++..+   .+      .++
T Consensus        29 G~~VlV~Ga-G~iG~~~~~~ak~~Ga-~~Vi~~~~~~~~~~~a~~lGa----~~vi~~-~~~~~~~~~~~i~~~~~~~g~  101 (182)
T d1vj0a2          29 GKTVVIQGA-GPLGLFGVVIARSLGA-ENVIVIAGSPNRLKLAEEIGA----DLTLNR-RETSVEERRKAIMDITHGRGA  101 (182)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTB-SEEEEEESCHHHHHHHHHTTC----SEEEET-TTSCHHHHHHHHHHHTTTSCE
T ss_pred             CCEEEEECC-Cccchhheeccccccc-ccccccccccccccccccccc----eEEEec-cccchHHHHHHHHHhhCCCCc
Confidence            458999998 9999999888888884 48999999772 223333321    111111 1122211   11      368


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 022947          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       116 DiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      |+||.+.|.+.               .+.+.   ++-..|.+.++++..
T Consensus       102 Dvvid~vG~~~---------------~~~~a---~~~l~~~G~iv~~G~  132 (182)
T d1vj0a2         102 DFILEATGDSR---------------ALLEG---SELLRRGGFYSVAGV  132 (182)
T ss_dssp             EEEEECSSCTT---------------HHHHH---HHHEEEEEEEEECCC
T ss_pred             eEEeecCCchh---------------HHHHH---HHHhcCCCEEEEEee
Confidence            99999987541               11222   233357888887754

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=92.38  E-value=0.07  Score=39.95  Aligned_cols=36  Identities=17%  Similarity=0.254  Sum_probs=31.6

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      ..+.+++|||+ |++|.-+|..+...|.  ++.+++..+
T Consensus        24 ~~p~~vvIiGg-G~IG~E~A~~~~~~G~--~Vtive~~~   59 (125)
T d1ojta2          24 EVPGKLLIIGG-GIIGLEMGTVYSTLGS--RLDVVEMMD   59 (125)
T ss_dssp             CCCSEEEEESC-SHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             ccCCeEEEECC-CHHHHHHHHHhhcCCC--EEEEEEeec
Confidence            34679999999 9999999999998887  999998765

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=92.00  E-value=0.058  Score=43.93  Aligned_cols=32  Identities=28%  Similarity=0.221  Sum_probs=29.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      -|+|||| |..|...|..|++.|+  +|+|+|.++
T Consensus         4 DViIIGa-G~aGl~aA~~la~~G~--~V~liEk~~   35 (251)
T d2i0za1           4 DVIVIGG-GPSGLMAAIGAAEEGA--NVLLLDKGN   35 (251)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            4899999 9999999999999998  999999876

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=91.97  E-value=0.2  Score=38.52  Aligned_cols=70  Identities=14%  Similarity=0.099  Sum_probs=41.5

Q ss_pred             CCEEEEEcCCCc--cHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEc
Q 022947           46 GFKVAVLGAAGG--IGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (289)
Q Consensus        46 ~~KI~IIGaaG~--VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIit  121 (289)
                      ..||+++|=..+  |..+++..+..-|.  +++++-..+....-.++... ....+..   ++|+++++++||+|..+
T Consensus         3 gl~i~~vGD~~~sRv~~Sl~~~l~~~g~--~~~~~~p~~~~~~~~~~~~~-~~~~~~~---~~d~~eai~~aDvvy~~   74 (153)
T d1pg5a2           3 GLVFALLGDLKYARTVNSLLRILTRFRP--KLVYLISPQLLRARKEILDE-LNYPVKE---VENPFEVINEVDVLYVT   74 (153)
T ss_dssp             TCEEEEEECCSSCHHHHHHHHHGGGSCC--SEEEEECCGGGCCCHHHHTT-CCSCEEE---ESCGGGTGGGCSEEEEE
T ss_pred             CCEEEEECCCCccHHHHHHHHHHHHcCC--eeEEEecccccccchhhccc-CCCeEEE---EeCHHHHhhcCCeEEEe
Confidence            569999997333  88888888877776  55544333210000111111 1234444   34778999999988876

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.92  E-value=0.06  Score=45.11  Aligned_cols=31  Identities=26%  Similarity=0.336  Sum_probs=28.7

Q ss_pred             EEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      |+|||| |..|.+.|..|++.|+  +|.++|..+
T Consensus         2 ViVIGa-G~aGL~aA~~L~~~G~--~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGG-GISGMAAAKLLHDSGL--NVVVLEARD   32 (383)
T ss_dssp             EEEECC-BHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             EEEECC-CHHHHHHHHHHHhCCC--CEEEEecCC
Confidence            789998 9999999999999998  899999765

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=91.87  E-value=0.072  Score=43.36  Aligned_cols=34  Identities=24%  Similarity=0.361  Sum_probs=31.1

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      +++.|+||++-+|..+|..|++.|.  +|++.|+++
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga--~V~i~~~~~   35 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGY--RVVVLDLRR   35 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCc
Confidence            3678889999999999999999998  999999986

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=91.85  E-value=0.06  Score=39.02  Aligned_cols=50  Identities=16%  Similarity=0.015  Sum_probs=34.3

Q ss_pred             cccccccccccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           30 SSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      +..+|+...+-+..-+.+||+|||+ |.-|.-++..|+..  +..+++.-+..
T Consensus        16 G~i~Hs~~y~~~~~f~gK~VlVVG~-g~Sa~dia~~l~~~--ak~v~~~~~r~   65 (107)
T d2gv8a2          16 GSVLHSSLFREPELFVGESVLVVGG-ASSANDLVRHLTPV--AKHPIYQSLLG   65 (107)
T ss_dssp             TSEEEGGGCCCGGGGTTCCEEEECS-SHHHHHHHHHHTTT--SCSSEEEECTT
T ss_pred             ccEEECCcCcchhhcCCCeEEEECC-CCCHHHHHHHHHHh--cCEEEEEEecC
Confidence            4456666555554455679999998 99999999888643  34556555543

>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.57  E-value=0.25  Score=40.03  Aligned_cols=102  Identities=19%  Similarity=0.299  Sum_probs=59.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCC-ccEEEEEeCCCchhHHhhhhcccCCceEEE---------------------EecC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRG---------------------FLGQ  105 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~-~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~---------------------~~~t  105 (289)
                      +|-|||- |.-|..++..+...++ ..+++.+|.|..     +|.......++..                     ....
T Consensus         3 ~IkViGv-GGaG~n~v~~~~~~~~~~v~~iainTD~~-----~L~~~~~~~ki~iG~~~~~g~G~gg~p~~g~~aa~e~~   76 (198)
T d1ofua1           3 VIKVIGV-GGGGGNAVNHMAKNNVEGVEFICANTDAQ-----ALKNIAARTVLQLGPGVTKGLGAGANPEVGRQAALEDR   76 (198)
T ss_dssp             CEEEEEE-HHHHHHHHHHHHHTTCCSEEEEEEESBTG-----GGSSCSCSEEEECCHHHHTTBCCCSCHHHHHHHHHHTH
T ss_pred             eEEEEEE-CchHHHHHHHHHHcCCCCeEEEEEeCcHH-----HHhcCCccceeccccccccCCCCCCChHHHHHHHHHHH
Confidence            5889999 9999999998888764 247888888751     1111110001000                     0001


Q ss_pred             CCHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 022947          106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV  166 (289)
Q Consensus       106 ~d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPv  166 (289)
                      ....+.++++|+||++||.....|       ..-.+.+.++++.   .. --.+-++|=|-
T Consensus        77 ~~I~~~l~~~d~vfi~AGlGGGTG-------tgaapviA~~ake---~g-~lvvaivtlPF  126 (198)
T d1ofua1          77 ERISEVLEGADMVFITTGMGGGTG-------TGAAPIIAEVAKE---MG-ILTVAVVTRPF  126 (198)
T ss_dssp             HHHHHHHTTCSEEEEEEETTSSHH-------HHHHHHHHHHHHH---TT-CEEEEEEEECC
T ss_pred             HHHHHHhCCCCeEEEEecCCCCcc-------ccHHHHHHHHHHH---cC-CCEEEEEecch
Confidence            234567899999999999764332       1235566555544   32 22344556664

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.16  E-value=0.66  Score=35.15  Aligned_cols=98  Identities=16%  Similarity=0.226  Sum_probs=57.4

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-chhHHhhhhcccCCceEEEEecCCCHH----hhhCCCCEE
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLE----DALTGMDIV  118 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~~g~~~DL~~~~~~~~v~~~~~t~d~~----eal~~aDiV  118 (289)
                      .+..+|.|.|+ |.||...+..+...|.  +++.+|.++ ....+.++.-    ..+... ..+++.    +...+.|.+
T Consensus        26 ~~g~~vlv~G~-G~iG~~a~~~a~~~g~--~v~~~~~~~~r~~~~k~~Ga----~~~~~~-~~~~~~~~~~~~~~~~~~~   97 (168)
T d1rjwa2          26 KPGEWVAIYGI-GGLGHVAVQYAKAMGL--NVVAVDIGDEKLELAKELGA----DLVVNP-LKEDAAKFMKEKVGGVHAA   97 (168)
T ss_dssp             CTTCEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHTTC----SEEECT-TTSCHHHHHHHHHSSEEEE
T ss_pred             CCCCEEEEeec-ccchhhhhHHHhcCCC--eEeccCCCHHHhhhhhhcCc----ceeccc-ccchhhhhcccccCCCceE
Confidence            34568999997 9999998888888887  899998866 2222232221    111111 122332    334677888


Q ss_pred             EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 022947          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (289)
Q Consensus       119 Iitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd  167 (289)
                      |++++.+               ..+..   .++-..|.+.++++..|.+
T Consensus        98 v~~~~~~---------------~~~~~---a~~~l~~~G~i~~~g~~~~  128 (168)
T d1rjwa2          98 VVTAVSK---------------PAFQS---AYNSIRRGGACVLVGLPPE  128 (168)
T ss_dssp             EESSCCH---------------HHHHH---HHHHEEEEEEEEECCCCSS
T ss_pred             EeecCCH---------------HHHHH---HHHHhccCCceEecccccC
Confidence            8876421               11222   2222358899988866544

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.04  E-value=0.088  Score=40.20  Aligned_cols=32  Identities=25%  Similarity=0.257  Sum_probs=26.4

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .||+|||+ |++|..+|..|.. +.  +|.+++..+
T Consensus         1 ~rVvIIGg-G~~G~e~A~~l~~-~~--~Vtvv~~~~   32 (167)
T d1xhca1           1 SKVVIVGN-GPGGFELAKQLSQ-TY--EVTVIDKEP   32 (167)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTT-TS--EEEEECSSS
T ss_pred             CeEEEECC-cHHHHHHHHHHHc-CC--CEEEEeccc
Confidence            38999999 9999999988854 44  899998654

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=90.87  E-value=0.3  Score=38.62  Aligned_cols=71  Identities=10%  Similarity=0.196  Sum_probs=44.7

Q ss_pred             CCEEEEEcC-CCccHHHHHHHHHhCCCccEEEEEeCCC--chhH----HhhhhcccCCceEEEEecCCCHHhhhCCCCEE
Q 022947           46 GFKVAVLGA-AGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGV----TADISHMDTNAVVRGFLGQQQLEDALTGMDIV  118 (289)
Q Consensus        46 ~~KI~IIGa-aG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~----~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiV  118 (289)
                      ..||+++|= ...|..+++..+..-|.  +|+++-..+  ....    +.+.... ....+..   +.+.+++++++|+|
T Consensus         5 ~l~i~~vGD~~nnv~~Sli~~~~~~g~--~l~~~~P~~~~~~~~~~~~~~~~~~~-~g~~~~~---~~d~~~a~~~aDvv   78 (183)
T d1duvg2           5 EMTLVYAGDARNNMGNSMLEAAALTGL--DLRLVAPQACWPEAALVTECRALAQQ-NGGNITL---TEDVAKGVEGADFI   78 (183)
T ss_dssp             GCEEEEESCTTSHHHHHHHHHHHHHCC--EEEEECCGGGCCCHHHHHHHHHHHHH-TTCEEEE---ESCHHHHHTTCSEE
T ss_pred             CCEEEEEcCCccHHHHHHHHHHHHcCC--EEEEEechHhhhhHHHHHHHHHHHHh-cCCceEE---EechhhccccCCEE
Confidence            469999994 12577788777777787  899986544  1111    1111111 1234443   35788999999999


Q ss_pred             EEcC
Q 022947          119 IIPA  122 (289)
Q Consensus       119 Iita  122 (289)
                      ....
T Consensus        79 yt~~   82 (183)
T d1duvg2          79 YTDV   82 (183)
T ss_dssp             EECC
T ss_pred             EEEe
Confidence            8763

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.74  E-value=0.23  Score=38.64  Aligned_cols=97  Identities=19%  Similarity=0.301  Sum_probs=58.5

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-chhHHhhhhcccCCceEEEEecCCCHHhhhC-----CCCE
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALT-----GMDI  117 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~-----~aDi  117 (289)
                      .+..+|.|+|+ |.+|...+..+...|. ..|+..|.++ ....+.++.-    ..+-.. ...|+.+.++     +.|+
T Consensus        27 ~~g~~VlI~G~-G~iG~~~~~~ak~~g~-~~v~~~~~~~~k~~~a~~~Ga----~~~i~~-~~~~~~~~i~~~t~gg~D~   99 (174)
T d1f8fa2          27 TPASSFVTWGA-GAVGLSALLAAKVCGA-SIIIAVDIVESRLELAKQLGA----THVINS-KTQDPVAAIKEITDGGVNF   99 (174)
T ss_dssp             CTTCEEEEESC-SHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHHHHTC----SEEEET-TTSCHHHHHHHHTTSCEEE
T ss_pred             CCCCEEEEeCC-CHHHhhhhhccccccc-ceeeeeccHHHHHHHHHHcCC----eEEEeC-CCcCHHHHHHHHcCCCCcE
Confidence            44568999998 9999999988877775 3677888876 2223333321    111111 2234444432     4899


Q ss_pred             EEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCC
Q 022947          118 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       118 VIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNP  165 (289)
                      ||.+.|.+               ..+.+.   ++-..|.+.+++++.|
T Consensus       100 vid~~G~~---------------~~~~~~---~~~~~~~G~i~~~G~~  129 (174)
T d1f8fa2         100 ALESTGSP---------------EILKQG---VDALGILGKIAVVGAP  129 (174)
T ss_dssp             EEECSCCH---------------HHHHHH---HHTEEEEEEEEECCCC
T ss_pred             EEEcCCcH---------------HHHHHH---HhcccCceEEEEEeec
Confidence            99998632               122222   2234588898887644

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=90.73  E-value=0.057  Score=42.57  Aligned_cols=35  Identities=23%  Similarity=0.209  Sum_probs=29.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      +..+|+|||+ |..|...|..+++.++  +++++|...
T Consensus         4 k~~dVvIIGG-GpaGl~AA~~~ar~g~--~v~iie~~~   38 (190)
T d1trba1           4 KHSKLLILGS-GPAGYTAAVYAARANL--QPVLITGME   38 (190)
T ss_dssp             EEEEEEEECC-SHHHHHHHHHHHTTTC--CCEEECCSS
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHHcCC--ceEEEEeec
Confidence            3458999999 9999999999999998  889998644

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=90.57  E-value=1.1  Score=36.66  Aligned_cols=87  Identities=14%  Similarity=0.017  Sum_probs=49.1

Q ss_pred             cccccccccccccccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCC-----ccEEEEEeCCC-chhHHhhhhcccCCceE
Q 022947           26 IEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVN-TPGVTADISHMDTNAVV   99 (289)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~-----~~eI~LvD~~~-~~g~~~DL~~~~~~~~v   99 (289)
                      ++|+..-|...+-.++   ..+||+|||- |.-|.+-|+.|...|+     +.-++-+.... ...++.  .+.......
T Consensus        27 ~~~~r~~f~~~~~~~k---g~KkIaViGY-GsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~--~dGf~v~~~  100 (226)
T d1qmga2          27 VRGGRNLFPLLPDAFK---GIKQIGVIGW-GSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEAR--AAGFSEENG  100 (226)
T ss_dssp             EECCGGGGGGHHHHTT---TCSEEEEECC-SSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHH--HTTCCGGGT
T ss_pred             EecccchhhhhHHHhc---CCCEEEEEEe-ccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHH--HcCCccCCC
Confidence            3455566665544444   3458999999 9999999999998542     11222332222 212222  111100111


Q ss_pred             EEEecCCCHHhhhCCCCEEEEcC
Q 022947          100 RGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus       100 ~~~~~t~d~~eal~~aDiVIita  122 (289)
                      ...    +.+|+.+.||+|.+..
T Consensus       101 ~v~----~v~EAv~~ADiVmiLl  119 (226)
T d1qmga2         101 TLG----DMWETISGSDLVLLLI  119 (226)
T ss_dssp             CEE----EHHHHHHTCSEEEECS
T ss_pred             ccc----CHHHHHhhCCEEEEec
Confidence            111    3468999999999984

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=90.53  E-value=0.089  Score=44.58  Aligned_cols=32  Identities=25%  Similarity=0.335  Sum_probs=27.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHh-----CCCccEEEEEeCCC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKI-----NPLVSVLHLYDVVN   82 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~-----~g~~~eI~LvD~~~   82 (289)
                      -|+|||| |.+|.++|..|++     .|+  +|+++|..+
T Consensus         9 DV~IvGa-G~aGl~lA~~La~~~~~~~G~--~v~vlEr~~   45 (360)
T d1pn0a1           9 DVLIVGA-GPAGLMAARVLSEYVRQKPDL--KVRIIDKRS   45 (360)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHHHHSTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHhcccccCCC--cEEEEcCCC
Confidence            4899999 9999999998863     677  899999865

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.48  E-value=0.1  Score=47.28  Aligned_cols=34  Identities=32%  Similarity=0.555  Sum_probs=30.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .||.|||+ |.+|+.++..|+..|+ .+|.|+|-+.
T Consensus        38 ~kVlvvG~-GglG~ei~k~L~~~Gv-g~i~lvD~D~   71 (426)
T d1yovb1          38 CKVLVIGA-GGLGCELLKNLALSGF-RQIHVIDMDT   71 (426)
T ss_dssp             CCEEEECS-STTHHHHHHHHHTTTC-CCEEEECCCB
T ss_pred             CeEEEECC-CHHHHHHHHHHHHcCC-CeEEEEECCC
Confidence            48999999 9999999999999995 5899999875

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=90.39  E-value=0.25  Score=38.11  Aligned_cols=62  Identities=11%  Similarity=0.206  Sum_probs=41.9

Q ss_pred             CCEEEEEcC--CCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEc
Q 022947           46 GFKVAVLGA--AGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (289)
Q Consensus        46 ~~KI~IIGa--aG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIit  121 (289)
                      ..||+++|=  .+.|..+++..+..-|.  ++.+......       ...  ...+..+   .+++++++++|+|..+
T Consensus         3 gl~i~~vGD~~~srv~~Sl~~~~~~~g~--~~~i~~P~~~-------~~~--~~~~~~~---~~~~ea~~~aDviy~~   66 (151)
T d2at2a2           3 GLTVSIHGDIKHSRVARSNAEVLTRLGA--RVLFSGPSEW-------QDE--ENTFGTY---VSMDEAVESSDVVMLL   66 (151)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHcCC--cccccCCchh-------hcc--ccceeEE---EechhccccCceeeee
Confidence            469999996  45689999888888786  7777754331       110  1122322   3567999999998876

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=90.05  E-value=0.43  Score=39.07  Aligned_cols=72  Identities=14%  Similarity=0.205  Sum_probs=38.1

Q ss_pred             CCCCEEEEEcCCCccH----HHHHHHHHhC-CCccEEE-EEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhh--CCC
Q 022947           44 SPGFKVAVLGAAGGIG----QPLAMLMKIN-PLVSVLH-LYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL--TGM  115 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VG----s~la~~L~~~-g~~~eI~-LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal--~~a  115 (289)
                      .+++||+|||+ |..|    ......+... +.+ +|+ ++|++.....  .+...........+   +++++.+  .+.
T Consensus        14 ~k~irvgiIG~-G~~~~~~~~~h~~ai~~~~~~~-~ivav~d~~~~~~~--~~~~~~~~~~~~~~---~~~~~l~~~~~i   86 (237)
T d2nvwa1          14 SRPIRVGFVGL-TSGKSWVAKTHFLAIQQLSSQF-QIVALYNPTLKSSL--QTIEQLQLKHATGF---DSLESFAQYKDI   86 (237)
T ss_dssp             GCCEEEEEECC-CSTTSHHHHTHHHHHHHTTTTE-EEEEEECSCHHHHH--HHHHHTTCTTCEEE---SCHHHHHHCTTC
T ss_pred             CCCeEEEEEec-CccccHHHHHHHHHHHhcCCCe-EEEEEEcCCHHHHH--HHHHhcccccceee---cchhhccccccc
Confidence            45689999998 7643    3334445443 322 655 7888652211  11111101122323   3676666  467


Q ss_pred             CEEEEcC
Q 022947          116 DIVIIPA  122 (289)
Q Consensus       116 DiVIita  122 (289)
                      |+|+++.
T Consensus        87 D~V~i~t   93 (237)
T d2nvwa1          87 DMIVVSV   93 (237)
T ss_dssp             SEEEECS
T ss_pred             ceeeccC
Confidence            7888873

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=89.88  E-value=0.17  Score=36.80  Aligned_cols=36  Identities=14%  Similarity=0.057  Sum_probs=27.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhC-CCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~-g~~~eI~LvD~~~   82 (289)
                      +.||+|||+ |++|.-+|..+... ....+|.+++..+
T Consensus        18 p~~v~IiGg-G~ig~E~A~~l~~~~~~g~~Vtli~~~~   54 (117)
T d1feca2          18 PKRALCVGG-GYISIEFAGIFNAYKARGGQVDLAYRGD   54 (117)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             CCeEEEECC-ChHHHHHHHHhHhhcccccccceecccc
Confidence            469999999 99999999765532 2234999999865

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.75  E-value=0.5  Score=36.51  Aligned_cols=73  Identities=18%  Similarity=0.239  Sum_probs=45.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhh------CCCCEE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL------TGMDIV  118 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal------~~aDiV  118 (289)
                      +..+|.|+||+|.||...+..+...|.  +++..+.++.+   .|+........+-.+ ...|+.+.+      ++.|+|
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~--~vi~~~~~~~~---~~~l~~~Ga~~vi~~-~~~~~~~~v~~~t~~~g~d~v   98 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGA--RIYTTAGSDAK---REMLSRLGVEYVGDS-RSVDFADEILELTDGYGVDVV   98 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTC--EEEEEESSHHH---HHHHHTTCCSEEEET-TCSTHHHHHHHHTTTCCEEEE
T ss_pred             CCCEEEEECCCCCcccccchhhccccc--cceeeeccccc---ccccccccccccccC-CccCHHHHHHHHhCCCCEEEE
Confidence            345899999889999999988888886  77776654311   122221111122222 234555555      579999


Q ss_pred             EEcCC
Q 022947          119 IIPAG  123 (289)
Q Consensus       119 Iitag  123 (289)
                      +-+.|
T Consensus        99 ~d~~g  103 (183)
T d1pqwa_          99 LNSLA  103 (183)
T ss_dssp             EECCC
T ss_pred             Eeccc
Confidence            99875

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=89.68  E-value=0.13  Score=42.33  Aligned_cols=32  Identities=19%  Similarity=0.212  Sum_probs=29.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .|.|||| |..|...|..|++.|+  +|.++|.++
T Consensus         6 DViIIGa-G~aGl~aA~~la~~G~--~V~vlEk~~   37 (253)
T d2gqfa1           6 ENIIIGA-GAAGLFCAAQLAKLGK--SVTVFDNGK   37 (253)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             cEEEECc-CHHHHHHHHHHHHCCC--cEEEEecCC
Confidence            5999999 9999999999999998  899999876

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=89.52  E-value=0.24  Score=37.98  Aligned_cols=35  Identities=17%  Similarity=0.220  Sum_probs=28.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV   81 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~   81 (289)
                      ..+|+|||+ |++|..+|..|...+.-..|++++..
T Consensus         3 ~~~VvIIGg-G~~G~e~A~~l~~~g~~v~v~~~~~~   37 (185)
T d1q1ra1           3 NDNVVIVGT-GLAGVEVAFGLRASGWEGNIRLVGDA   37 (185)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCEEEECC-cHHHHHHHHHHHHcCCceEEEEecCc
Confidence            358999999 99999999999998874456666543

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=89.35  E-value=0.7  Score=35.97  Aligned_cols=98  Identities=15%  Similarity=0.187  Sum_probs=57.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-chhHHhhhhcccCCceEEEEecCCC-HH---h--hhCCCCE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQ-LE---D--ALTGMDI  117 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~~g~~~DL~~~~~~~~v~~~~~t~d-~~---e--al~~aDi  117 (289)
                      +...|+|+|+ |-+|...+..+...|. .+|+.+|.++ ....+.++.-..    +-.....++ .+   +  .=.+.|+
T Consensus        29 ~g~tVlI~G~-GgvGl~ai~~ak~~G~-~~Vi~vd~~~~kl~~Ak~~GA~~----~in~~~~~~~~~~~~~~~~g~G~d~  102 (176)
T d1d1ta2          29 PGSTCVVFGL-GGVGLSVIMGCKSAGA-SRIIGIDLNKDKFEKAMAVGATE----CISPKDSTKPISEVLSEMTGNNVGY  102 (176)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHHTCSE----EECGGGCSSCHHHHHHHHHTSCCCE
T ss_pred             CCCEEEEECC-CchhHHHHHHHHHcCC-ceEEEecCcHHHHHHHHhcCCcE----EECccccchHHHHHHHHhccccceE
Confidence            3457999998 9999999988888874 5899999987 223333333211    000111111 11   1  1268999


Q ss_pred             EEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 022947          118 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPV  166 (289)
Q Consensus       118 VIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPv  166 (289)
                      ||.+.|.+               +.+.   ..+.... +.+.++++..|.
T Consensus       103 vi~~~g~~---------------~~~~---~a~~~~~~~~G~~v~vG~~~  134 (176)
T d1d1ta2         103 TFEVIGHL---------------ETMI---DALASCHMNYGTSVVVGVPP  134 (176)
T ss_dssp             EEECSCCH---------------HHHH---HHHTTSCTTTCEEEECSCCC
T ss_pred             EEEeCCch---------------HHHH---HHHHHhhcCCeEEEEEEccc
Confidence            99997632               1122   2222333 458888887764

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=89.20  E-value=0.083  Score=39.61  Aligned_cols=87  Identities=15%  Similarity=0.191  Sum_probs=50.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-chhHHhhhhcccCCceEEEEecCCCHHhhh-CCCCEEEEcCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDAL-TGMDIVIIPAG  123 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~~g~~~DL~~~~~~~~v~~~~~t~d~~eal-~~aDiVIitag  123 (289)
                      +.+|+|+|| |..|..++..+....-..-+.++|.++ ..|...        ..+..+. .+++++-. +..++++++. 
T Consensus         3 ~~~v~I~Ga-G~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I--------~Gi~V~~-~~~l~~~~~~~i~iai~~i-   71 (126)
T d2dt5a2           3 KWGLCIVGM-GRLGSALADYPGFGESFELRGFFDVDPEKVGRPV--------RGGVIEH-VDLLPQRVPGRIEIALLTV-   71 (126)
T ss_dssp             CEEEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEE--------TTEEEEE-GGGHHHHSTTTCCEEEECS-
T ss_pred             CceEEEEcC-CHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEE--------CCEEEec-HHHHHHHHhhcccEEEEeC-
Confidence            458999999 999999987654443345678889876 333211        0122221 23443333 3455555553 


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcE
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI  158 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~ai  158 (289)
                       |              .+..+++++.+.+++-.++
T Consensus        72 -~--------------~~~~~~I~d~l~~~gIk~I   91 (126)
T d2dt5a2          72 -P--------------REAAQKAADLLVAAGIKGI   91 (126)
T ss_dssp             -C--------------HHHHHHHHHHHHHHTCCEE
T ss_pred             -C--------------HHHHHHHHHHHHHcCCCEE
Confidence             2              2334667777877775544

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=89.03  E-value=0.75  Score=33.62  Aligned_cols=94  Identities=12%  Similarity=0.006  Sum_probs=53.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCC---HH-hhhCCCCEEEEcCC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ---LE-DALTGMDIVIIPAG  123 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d---~~-eal~~aDiVIitag  123 (289)
                      .|.|+|. |.+|..++..|.  +.  +++++|.++....  .+....  ..+- +...++   ++ ..+.+|+.+|++..
T Consensus         2 HivI~G~-g~~g~~l~~~L~--~~--~i~vi~~d~~~~~--~~~~~~--~~~i-~Gd~~~~~~L~~a~i~~A~~vi~~~~   71 (129)
T d2fy8a1           2 HVVICGW-SESTLECLRELR--GS--EVFVLAEDENVRK--KVLRSG--ANFV-HGDPTRVSDLEKANVRGARAVIVNLE   71 (129)
T ss_dssp             CEEEESC-CHHHHHHHHTSC--GG--GEEEEESCTTHHH--HHHHTT--CEEE-ESCTTSHHHHHHTTCTTCSEEEECCS
T ss_pred             EEEEECC-CHHHHHHHHHHc--CC--CCEEEEcchHHHH--HHHhcC--cccc-ccccCCHHHHHHhhhhcCcEEEEecc
Confidence            5889998 999999998774  33  6788898773222  122211  1111 111122   21 22688999998742


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV  166 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPv  166 (289)
                      .      +     ..|+.    ++..+++.+|+..++..+|-.
T Consensus        72 ~------d-----~~n~~----~~~~~r~~~~~~~iia~~~~~   99 (129)
T d2fy8a1          72 S------D-----SETIH----CILGIRKIDESVRIIAEAERY   99 (129)
T ss_dssp             S------H-----HHHHH----HHHHHHHHCSSSCEEEECSSG
T ss_pred             c------h-----hhhHH----HHHHHHHHCCCceEEEEEcCH
Confidence            1      1     23433    345567788997666555433

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.83  E-value=0.13  Score=40.49  Aligned_cols=33  Identities=15%  Similarity=0.230  Sum_probs=28.8

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .+|+|||+ |..|...|..+++.|+  +++++|...
T Consensus         6 ~~VvIIGg-GpaGl~aA~~~ar~g~--~v~vie~~~   38 (192)
T d1vdca1           6 TRLCIVGS-GPAAHTAAIYAARAEL--KPLLFEGWM   38 (192)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHTTC--CCEEECCSS
T ss_pred             ceEEEECC-CHHHHHHHHHHHHcCC--cEEEEEeec
Confidence            58999999 9999999999999998  788888543

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=88.80  E-value=1.3  Score=33.19  Aligned_cols=116  Identities=11%  Similarity=0.018  Sum_probs=65.2

Q ss_pred             CCEEEEEcCC---CccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           46 GFKVAVLGAA---GGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        46 ~~KI~IIGaa---G~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      ++.|+|||||   +..|..++..|...|+  .+.++-.++....   +..      ...+   .++.+.=...|+|+++.
T Consensus        13 pksIAVVGaS~~~~k~g~~v~~~L~~~g~--~~~~v~~~~~~~~---i~g------~~~~---~~l~~i~~~iD~v~v~~   78 (136)
T d1iuka_          13 AKTIAVLGAHKDPSRPAHYVPRYLREQGY--RVLPVNPRFQGEE---LFG------EEAV---ASLLDLKEPVDILDVFR   78 (136)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTTC--EEEEECGGGTTSE---ETT------EECB---SSGGGCCSCCSEEEECS
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHhcCCC--CceEEEeccccce---eec------eecc---cchhhccCCCceEEEec
Confidence            5589999996   4577888888989998  7888865431111   111      1111   23322225679999973


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-e-eccHHHH
Q 022947          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-T-MLDVVRA  199 (289)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t-~lds~R~  199 (289)
                                      +.+.+.++.+++.+....++++...--.+-+    .+.+++. |+   ++++= | ..+..||
T Consensus        79 ----------------p~~~v~~~v~~~~~~g~k~i~~q~G~~~~e~----~~~a~~~-Gi---~vV~~~C~~ie~~rl  133 (136)
T d1iuka_          79 ----------------PPSALMDHLPEVLALRPGLVWLQSGIRHPEF----EKALKEA-GI---PVVADRCLMVEHKRL  133 (136)
T ss_dssp             ----------------CHHHHTTTHHHHHHHCCSCEEECTTCCCHHH----HHHHHHT-TC---CEEESCCHHHHHHHH
T ss_pred             ----------------cHHHHHHHHHHHHhhCCCeEEEecCccCHHH----HHHHHHc-CC---EEEcCCccHHHHHHh
Confidence                            2344555666666667777665432222222    2334433 44   67763 6 4555554

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.76  E-value=0.39  Score=36.91  Aligned_cols=49  Identities=18%  Similarity=0.008  Sum_probs=33.6

Q ss_pred             cccccccccccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           30 SSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      ...|.-....++..  ..||+|||+ |.+|.-.|..+...| +..++++-+..
T Consensus        31 ~~~~~~~~~~~p~~--~~kVvVIGG-GdtA~D~A~~a~r~G-A~~V~vi~rr~   79 (153)
T d1gtea3          31 KAGMCACHSPLPSI--RGAVIVLGA-GDTAFDCATSALRCG-ARRVFLVFRKG   79 (153)
T ss_dssp             CBTTBSCCCCCCCC--CSEEEEECS-SHHHHHHHHHHHHTT-CSEEEEECSSC
T ss_pred             ccCCCcccCccccC--CCEEEEECC-ChhHHHHHHHHHHcC-CcceeEEEeCC
Confidence            33444444445533  458999999 999999998887777 35777775543

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=88.68  E-value=0.21  Score=36.42  Aligned_cols=36  Identities=17%  Similarity=0.075  Sum_probs=27.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCC-CccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g-~~~eI~LvD~~~   82 (289)
                      +.+|+|||+ |++|.-+|..+...+ ...+|.+++..+
T Consensus        20 p~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          20 PRRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             CCeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            469999999 999999997665433 123899999765

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=88.63  E-value=0.19  Score=39.99  Aligned_cols=32  Identities=13%  Similarity=0.074  Sum_probs=28.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      -|+|||| |..|.+.|..+++.|.  +|+++|.++
T Consensus         4 DvvVIG~-G~aG~~aA~~a~~~G~--kV~iiE~~~   35 (217)
T d1gesa1           4 DYIAIGG-GSGGIASINRAAMYGQ--KCALIEAKE   35 (217)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTTTC--CEEEEESSC
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--EEEEEeccC
Confidence            4899999 9999999999999998  899999765

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=88.57  E-value=0.17  Score=42.20  Aligned_cols=32  Identities=25%  Similarity=0.343  Sum_probs=28.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHhC-CCccEEEEEeCCC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN   82 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~-g~~~eI~LvD~~~   82 (289)
                      -|+|||| |..|...|..|+++ |+  +++++|..+
T Consensus        35 DViVIGa-GpaGL~aA~~LA~~~G~--~V~vlE~~~   67 (278)
T d1rp0a1          35 DVVVVGA-GSAGLSAAYEISKNPNV--QVAIIEQSV   67 (278)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTSTTS--CEEEEESSS
T ss_pred             CEEEECC-CHHHHHHHHHHHHccCC--eEEEEecCC
Confidence            4999999 99999999999874 88  999999865

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=88.45  E-value=0.78  Score=35.29  Aligned_cols=36  Identities=28%  Similarity=0.358  Sum_probs=29.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      +..+|.|+|+ |-+|...+..++..+. ..|+..|.++
T Consensus        28 ~GdtVlV~Ga-GG~G~~~~~~~~~~g~-~~Vi~~~~~~   63 (176)
T d2jhfa2          28 QGSTCAVFGL-GGVGLSVIMGCKAAGA-ARIIGVDINK   63 (176)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEECSCG
T ss_pred             CCCEEEEECC-CCcHHHHHHHHHHcCC-ceEEeecCcH
Confidence            3468999999 8899998888887763 4899999887

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=88.41  E-value=0.51  Score=36.38  Aligned_cols=71  Identities=17%  Similarity=0.098  Sum_probs=46.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcccCCceEEEEecCCCHHhhh------CCCCEE
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDAL------TGMDIV  118 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~~~~~~v~~~~~t~d~~eal------~~aDiV  118 (289)
                      ..+|.|+||+|.+|......+...|.  +|+..|.++. ...+.++.   . ..+-.+ ...|+.+.+      ++.|+|
T Consensus        29 g~~Vlv~ga~g~vG~~~iqlak~~Ga--~Vi~~~~s~~k~~~~~~lG---a-~~vi~~-~~~d~~~~v~~~t~g~g~d~v  101 (179)
T d1qora2          29 DEQFLFHAAAGGVGLIACQWAKALGA--KLIGTVGTAQKAQSALKAG---A-WQVINY-REEDLVERLKEITGGKKVRVV  101 (179)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHHT---C-SEEEET-TTSCHHHHHHHHTTTCCEEEE
T ss_pred             CCEEEEEccccccchHHHHHHHHhCC--eEeecccchHHHHHHHhcC---C-eEEEEC-CCCCHHHHHHHHhCCCCeEEE
Confidence            45899999988899999988888886  8999988762 22233332   1 122222 234555544      467888


Q ss_pred             EEcCC
Q 022947          119 IIPAG  123 (289)
Q Consensus       119 Iitag  123 (289)
                      +-++|
T Consensus       102 ~d~~g  106 (179)
T d1qora2         102 YDSVG  106 (179)
T ss_dssp             EECSC
T ss_pred             EeCcc
Confidence            88865

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=88.27  E-value=2.8  Score=33.48  Aligned_cols=152  Identities=15%  Similarity=0.129  Sum_probs=72.6

Q ss_pred             ccCCCCCCCEEEEEcCCCccHHHHH-----HHHHhCCCccEEEEEeCCC-chhHH---hhhhcccCCceEEEEecCCCHH
Q 022947           39 RAKGGSPGFKVAVLGAAGGIGQPLA-----MLMKINPLVSVLHLYDVVN-TPGVT---ADISHMDTNAVVRGFLGQQQLE  109 (289)
Q Consensus        39 ~~~~~~~~~KI~IIGaaG~VGs~la-----~~L~~~g~~~eI~LvD~~~-~~g~~---~DL~~~~~~~~v~~~~~t~d~~  109 (289)
                      ++|--.++.-|.++|. .-||.+..     ..+..++.  .|.++..|. ..+-.   ..+.+.. ...+.......++.
T Consensus         3 ~lp~~~~~~vi~lvGp-~GvGKTTTiaKLA~~~~~~g~--kV~lit~Dt~R~gA~eQL~~~a~~l-~v~~~~~~~~~~~~   78 (207)
T d1ls1a2           3 RLPVLKDRNLWFLVGL-QGSGKTTTAAKLALYYKGKGR--RPLLVAADTQRPAAREQLRLLGEKV-GVPVLEVMDGESPE   78 (207)
T ss_dssp             CCCCCCSSEEEEEECC-TTTTHHHHHHHHHHHHHHTTC--CEEEEECCSSCHHHHHHHHHHHHHH-TCCEEECCTTCCHH
T ss_pred             CCCCCCCCcEEEEECC-CCCCHHHHHHHHHHHHHHCCC--cEEEEecccccchHHHHHHHHHHhc-CCccccccccchhh
Confidence            3443333333677898 66788653     34455665  788888876 21111   1111111 12233222223432


Q ss_pred             h---------hhCCCCEEEE-cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec--CCCcccHHHHHHHH
Q 022947          110 D---------ALTGMDIVII-PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVNSTVPIAAEVF  177 (289)
Q Consensus       110 e---------al~~aDiVIi-tag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t--NPvd~~t~~~~~~~  177 (289)
                      +         ...++|+|++ |+|....           |...+.++.+..+...|+-++++.+  .+-+.+. .+ +.+
T Consensus        79 ~~~~~~~~~~~~~~~d~vlIDTaGr~~~-----------d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~-~~-~~f  145 (207)
T d1ls1a2          79 SIRRRVEEKARLEARDLILVDTAGRLQI-----------DEPLMGELARLKEVLGPDEVLLVLDAMTGQEALS-VA-RAF  145 (207)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEECCCCSSC-----------CHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHH-HH-HHH
T ss_pred             HHHHHHHHHHhhccCcceeecccccchh-----------hhhhHHHHHHHHhhcCCceEEEEeccccchhHHH-HH-HHH
Confidence            2         2589999999 6775422           3344455554444456776555542  3433333 22 223


Q ss_pred             HHhCCCCCCcEEEeeeccHHH-HH--HHHHHHcCCC
Q 022947          178 KKVGTYDPKRLLGVTMLDVVR-AN--TFVAEVLGLD  210 (289)
Q Consensus       178 ~~~~~~~~~kviG~t~lds~R-~~--~~lA~~l~v~  210 (289)
                      .+.  ++.+.+| +|.+|..+ +-  -.++..++++
T Consensus       146 ~~~--~~~~~~I-~TKlDe~~~~G~~l~~~~~~~~P  178 (207)
T d1ls1a2         146 DEK--VGVTGLV-LTKLDGDARGGAALSARHVTGKP  178 (207)
T ss_dssp             HHH--TCCCEEE-EECGGGCSSCHHHHHHHHHHCCC
T ss_pred             Hhh--CCCCeeE-EeecCccccchHHHHHHHHHCCC
Confidence            332  3333332 36666643 22  2234555554

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=88.22  E-value=0.21  Score=39.41  Aligned_cols=78  Identities=19%  Similarity=0.123  Sum_probs=43.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhH--Hh--hhhcccCC-ceEE-----EEecCCCHHhhhCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TA--DISHMDTN-AVVR-----GFLGQQQLEDALTGM  115 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~--~~--DL~~~~~~-~~v~-----~~~~t~d~~eal~~a  115 (289)
                      |.||+|-|- |.+|..+...+..++-..-+.+-|+.+....  ..  +....... ....     .+....++.+.+.++
T Consensus         1 M~~VgINGf-GRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~v   79 (171)
T d1cf2o1           1 MKAVAINGY-GTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEA   79 (171)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTC
T ss_pred             CeEEEEEcC-cHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCC
Confidence            469999998 9999999988877774433344455442111  11  11110000 0000     000112455678899


Q ss_pred             CEEEEcCCC
Q 022947          116 DIVIIPAGV  124 (289)
Q Consensus       116 DiVIitag~  124 (289)
                      |+||.|-|.
T Consensus        80 DvViEcTG~   88 (171)
T d1cf2o1          80 DIVIDCTPE   88 (171)
T ss_dssp             SEEEECCST
T ss_pred             CEEEEccCC
Confidence            999999764

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.04  E-value=0.89  Score=34.90  Aligned_cols=96  Identities=17%  Similarity=0.131  Sum_probs=56.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcccCCceEEEEecCCCHHhhh------CCCCE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDAL------TGMDI  117 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~~~~~~v~~~~~t~d~~eal------~~aDi  117 (289)
                      +..+|.|+||+|.||......+...|.  +++..+.++. ...+.++.   . ..+-.+ .+.|+.+.+      ++.|+
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~--~vi~~~~~~~~~~~~~~~G---a-~~vi~~-~~~~~~~~i~~~t~~~g~d~  100 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGL--KILGTAGTEEGQKIVLQNG---A-HEVFNH-REVNYIDKIKKYVGEKGIDI  100 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHTT---C-SEEEET-TSTTHHHHHHHHHCTTCEEE
T ss_pred             CCCEEEEEeccccccccccccccccCc--ccccccccccccccccccC---c-cccccc-ccccHHHHhhhhhccCCceE
Confidence            455899999889999999888888886  7777775441 12222221   1 122222 223454443      45899


Q ss_pred             EEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 022947          118 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV  166 (289)
Q Consensus       118 VIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPv  166 (289)
                      |+-+.|-                +.+....   .-..|.+.++.+.++.
T Consensus       101 v~d~~g~----------------~~~~~~~---~~l~~~G~iv~~G~~~  130 (174)
T d1yb5a2         101 IIEMLAN----------------VNLSKDL---SLLSHGGRVIVVGSRG  130 (174)
T ss_dssp             EEESCHH----------------HHHHHHH---HHEEEEEEEEECCCCS
T ss_pred             EeecccH----------------HHHHHHH---hccCCCCEEEEEecCC
Confidence            9887541                1222222   2235788988886543

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=87.76  E-value=1.9  Score=31.86  Aligned_cols=87  Identities=17%  Similarity=0.202  Sum_probs=53.0

Q ss_pred             CCCCEEEEEcCC---CccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEE
Q 022947           44 SPGFKVAVLGAA---GGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (289)
Q Consensus        44 ~~~~KI~IIGaa---G~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIi  120 (289)
                      -++++|+|||||   |..|..+...|...+ ..+|+.+.....     ++.-      +..+   .++.+.=...|++++
T Consensus         6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~-~g~v~pVnP~~~-----~i~G------~~~y---~sl~dlp~~vDlvvi   70 (129)
T d2csua1           6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYK-KGKVYPVNIKEE-----EVQG------VKAY---KSVKDIPDEIDLAII   70 (129)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCC-SSEEEEECSSCS-----EETT------EECB---SSTTSCSSCCSEEEE
T ss_pred             CCCCeEEEEccCCCCCCcHHHHHHHHHHcC-CCcEEEeccCcc-----ccCC------eEee---cchhhcCCCCceEEE
Confidence            457799999997   788888877776554 458888865331     1111      1111   123222246899998


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEE
Q 022947          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL  161 (289)
Q Consensus       121 tag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv  161 (289)
                      +.                ..+.+.++.+++.+.+-.+.++.
T Consensus        71 ~v----------------p~~~~~~~~~~~~~~g~~~~vi~   95 (129)
T d2csua1          71 VV----------------PKRFVKDTLIQCGEKGVKGVVII   95 (129)
T ss_dssp             CS----------------CHHHHHHHHHHHHHHTCCEEEEC
T ss_pred             ec----------------ChHHhHHHHHHHHHcCCCEEEEe
Confidence            74                24556667777777776655544

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.73  E-value=0.26  Score=36.95  Aligned_cols=34  Identities=15%  Similarity=0.072  Sum_probs=27.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHh----CCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKI----NPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~----~g~~~eI~LvD~~~   82 (289)
                      ..+|+|||+ |++|.-+|..|..    .|.  +|.+++..+
T Consensus        37 ~k~i~IvGg-G~~G~E~A~~l~~~~~~~g~--~Vt~i~~~~   74 (137)
T d1m6ia2          37 VKSITIIGG-GFLGSELACALGRKARALGT--EVIQLFPEK   74 (137)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHHHHhcCC--EEEEecccc
Confidence            458999999 9999999887753    355  999998865

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=87.69  E-value=0.22  Score=38.60  Aligned_cols=33  Identities=18%  Similarity=0.195  Sum_probs=26.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV   80 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~   80 (289)
                      .||+|||+ |++|..+|..|...+.-..|+++..
T Consensus         4 a~VvIIGg-G~~G~e~A~~l~~~g~~v~i~~~~~   36 (183)
T d1d7ya1           4 APVVVLGA-GLASVSFVAELRQAGYQGLITVVGD   36 (183)
T ss_dssp             SSEEEECC-SHHHHHHHHHHHHHTCCSCEEEEES
T ss_pred             CCEEEECc-cHHHHHHHHHHHhcCCceEEEEEec
Confidence            47999998 9999999999988776446666543

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=87.47  E-value=2.5  Score=30.52  Aligned_cols=82  Identities=10%  Similarity=0.120  Sum_probs=50.5

Q ss_pred             CEEEEEcCC---CccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947           47 FKVAVLGAA---GGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (289)
Q Consensus        47 ~KI~IIGaa---G~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag  123 (289)
                      ++|+|||+|   +..|..+...|+..|+  +|+.+..+..  .   +.      .+..+   .++.+.=...|+++++. 
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~--~V~pVnP~~~--~---i~------G~~~y---~sl~~lp~~~D~vvi~v-   64 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGF--EVLPVNPNYD--E---IE------GLKCY---RSVRELPKDVDVIVFVV-   64 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTC--EEEEECTTCS--E---ET------TEECB---SSGGGSCTTCCEEEECS-
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCC--EEEEEccccc--c---cc------Ccccc---ccchhccccceEEEEEe-
Confidence            489999986   5678888889999998  7888754321  1   11      11111   13322224569999873 


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEE
Q 022947          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN  160 (289)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aivi  160 (289)
                                     ..+.+.++.+++.+.++.++++
T Consensus        65 ---------------p~~~~~~~l~~~~~~g~k~v~~   86 (116)
T d1y81a1          65 ---------------PPKVGLQVAKEAVEAGFKKLWF   86 (116)
T ss_dssp             ---------------CHHHHHHHHHHHHHTTCCEEEE
T ss_pred             ---------------CHHHHHHHHHHHHhcCCceEEe
Confidence                           2445566666666677666543

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=87.37  E-value=0.26  Score=36.61  Aligned_cols=54  Identities=24%  Similarity=0.386  Sum_probs=39.0

Q ss_pred             ccccccccccccc-----cccccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeC
Q 022947           23 TLQIEGESSGLGR-----MDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV   80 (289)
Q Consensus        23 ~~~~~~~~~~~~~-----~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~   80 (289)
                      .|.|+||..|++|     ..|-.+ +-+.++|+|+|+ |.-...-|..|.  .++.+|.|+=+
T Consensus         3 ~L~ipge~~~~gkGV~yca~cD~~-~~~gk~V~VvGg-G~sA~~~A~~L~--~~a~~V~li~r   61 (126)
T d1fl2a2           3 NMNVPGEDQYRTKGVTYCPHCDGP-LFKGKRVAVIGG-GNSGVEAAIDLA--GIVEHVTLLEF   61 (126)
T ss_dssp             CCCCTTTTTTBTTTEESCHHHHGG-GGBTCEEEEECC-SHHHHHHHHHHH--TTBSEEEEECS
T ss_pred             cCCCCCHHHhcCCCEEEEEecChh-hcCCceEEEEeC-CHHHHHHHHhhh--ccCCceEEEec
Confidence            4788999998887     234333 344679999999 887777776665  45679999944

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=87.23  E-value=0.24  Score=38.37  Aligned_cols=38  Identities=26%  Similarity=0.211  Sum_probs=28.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      +|+||+|.|++|.||......+.+.+---+|+.+--+.
T Consensus         1 ~pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~   38 (150)
T d1r0ka2           1 QPRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANR   38 (150)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESS
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCC
Confidence            36799999999999999887777654222666665444

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.23  E-value=0.26  Score=39.25  Aligned_cols=32  Identities=16%  Similarity=0.135  Sum_probs=29.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      =|+|||+ |..|.+.|..+++.|.  +|+++|..+
T Consensus         7 DviVIG~-GpAGl~aA~~aa~~G~--kV~lie~~~   38 (233)
T d1v59a1           7 DVVIIGG-GPAGYVAAIKAAQLGF--NTACVEKRG   38 (233)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--cEEEEEecC
Confidence            4899998 9999999999999998  999999765

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=87.22  E-value=0.92  Score=34.68  Aligned_cols=74  Identities=18%  Similarity=0.183  Sum_probs=44.3

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcccCCceEEEEecCCC-HHhhh-----CCCC
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQ-LEDAL-----TGMD  116 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~~~~~~v~~~~~t~d-~~eal-----~~aD  116 (289)
                      ++..+|+|+|+ |-+|...+..++..+- .+|+.+|.++. ...+.++.-.    .+-.+....+ .++..     .++|
T Consensus        27 k~g~~VlI~G~-Gg~g~~~~~~~~~~g~-~~Vi~~~~~~~rl~~a~~~GAd----~~in~~~~~~~~~~~~~~~~~~G~d  100 (175)
T d1cdoa2          27 EPGSTCAVFGL-GAVGLAAVMGCHSAGA-KRIIAVDLNPDKFEKAKVFGAT----DFVNPNDHSEPISQVLSKMTNGGVD  100 (175)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHTTCC----EEECGGGCSSCHHHHHHHHHTSCBS
T ss_pred             CCCCEEEEEec-CCccchHHHHHHHHhh-chheeecchHHHHHHHHHcCCc----EEEcCCCcchhHHHHHHhhccCCcc
Confidence            34568999998 8888888877776653 48999998773 3334444311    1111111111 11111     5799


Q ss_pred             EEEEcCC
Q 022947          117 IVIIPAG  123 (289)
Q Consensus       117 iVIitag  123 (289)
                      +||.+.|
T Consensus       101 ~vid~~G  107 (175)
T d1cdoa2         101 FSLECVG  107 (175)
T ss_dssp             EEEECSC
T ss_pred             eeeeecC
Confidence            9999986

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=87.20  E-value=0.89  Score=34.64  Aligned_cols=97  Identities=16%  Similarity=0.134  Sum_probs=56.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcccCCceEEEEecCCCHHhhh------CCCCE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDAL------TGMDI  117 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~~~~~~v~~~~~t~d~~eal------~~aDi  117 (289)
                      +..+|.|+|++|.+|...+..+...+. .+|+..|.++. ...+.++.-   . .+-.. ...|+.+.+      .+.|+
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~-~~V~~~~~~~~~~~~~~~~Ga---~-~~i~~-~~~~~~~~~~~~~~~~~~d~  100 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSG-ATIIGVDVREEAVEAAKRAGA---D-YVINA-SMQDPLAEIRRITESKGVDA  100 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTC-CEEEEEESSHHHHHHHHHHTC---S-EEEET-TTSCHHHHHHHHTTTSCEEE
T ss_pred             CCCEEEEEeccccceeeeeeccccccc-ccccccccchhhHHHHHHcCC---c-eeecc-CCcCHHHHHHHHhhcccchh
Confidence            446899999779999988877777664 38999998762 222232221   1 11111 123333332      46899


Q ss_pred             EEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCC
Q 022947          118 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP  165 (289)
Q Consensus       118 VIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNP  165 (289)
                      ||.++|.+               +.+...   ++-..|.+.+++++.+
T Consensus       101 vid~~g~~---------------~~~~~a---~~~l~~~G~iv~~G~~  130 (170)
T d1jvba2         101 VIDLNNSE---------------KTLSVY---PKALAKQGKYVMVGLF  130 (170)
T ss_dssp             EEESCCCH---------------HHHTTG---GGGEEEEEEEEECCSS
T ss_pred             hhcccccc---------------hHHHhh---hhhcccCCEEEEeccc
Confidence            99997632               111111   2333488888888544

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.18  E-value=0.36  Score=36.54  Aligned_cols=34  Identities=24%  Similarity=0.335  Sum_probs=24.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV   81 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~   81 (289)
                      ||+|+|++|.+|+.++..+...+-..=+..+|..
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~   34 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAG   34 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTT
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence            7999999999999998877665533223345543

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=87.00  E-value=0.24  Score=41.56  Aligned_cols=32  Identities=25%  Similarity=0.297  Sum_probs=29.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      =|.|||+ |..|.+.|..|++.|.  +|+|+|...
T Consensus        18 DVlVIG~-G~aGl~aA~~la~~G~--~V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVGS-GGAGFSAAISATDSGA--KVILIEKEP   49 (308)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEecCC
Confidence            4899998 9999999999999997  899999765

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=86.72  E-value=1.2  Score=34.37  Aligned_cols=96  Identities=14%  Similarity=0.109  Sum_probs=56.9

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhh------hCCCCE
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDA------LTGMDI  117 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~ea------l~~aDi  117 (289)
                      ++..+|.|.||+|.||...+...+..|.  +++..+.++.+.  ..+.... ...+-... ++++.+.      -.+.|+
T Consensus        28 ~~G~~VlV~ga~ggvG~~aiqlak~~Ga--~vi~~~~~~~~~--~~~~~~G-a~~vi~~~-~~~~~~~~~~~~~~~Gvd~  101 (182)
T d1v3va2          28 KGGETVLVSAAAGAVGSVVGQIAKLKGC--KVVGAAGSDEKI--AYLKQIG-FDAAFNYK-TVNSLEEALKKASPDGYDC  101 (182)
T ss_dssp             CSSCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESSHHHH--HHHHHTT-CSEEEETT-SCSCHHHHHHHHCTTCEEE
T ss_pred             CCCCEEEEEeCCCchhHHHHHHHHccCC--EEEEeCCCHHHH--HHHHhhh-hhhhcccc-cccHHHHHHHHhhcCCCce
Confidence            4456899999999999999999998996  888887654211  1111211 11221111 2222222      267999


Q ss_pred             EEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 022947          118 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (289)
Q Consensus       118 VIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN  164 (289)
                      |+-+.|-                +.+.+.   +.-..|.+.++++.+
T Consensus       102 v~D~vG~----------------~~~~~~---~~~l~~~G~~v~~G~  129 (182)
T d1v3va2         102 YFDNVGG----------------EFLNTV---LSQMKDFGKIAICGA  129 (182)
T ss_dssp             EEESSCH----------------HHHHHH---GGGEEEEEEEEECCC
T ss_pred             eEEecCc----------------hhhhhh---hhhccCCCeEEeecc
Confidence            9998751                122222   333458889888865

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=86.41  E-value=0.23  Score=39.29  Aligned_cols=32  Identities=16%  Similarity=0.111  Sum_probs=28.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      =|.|||+ |..|.+.|..+++.|.  +++++|..+
T Consensus         5 DvvVIGg-GpaGl~aA~~aa~~G~--kV~vie~~~   36 (221)
T d1dxla1           5 DVVIIGG-GPGGYVAAIKAAQLGF--KTTCIEKRG   36 (221)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHHTC--CEEEEECSS
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--cEEEEEecC
Confidence            4889999 9999999999999897  899999765

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=86.22  E-value=0.29  Score=37.58  Aligned_cols=30  Identities=20%  Similarity=0.279  Sum_probs=26.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV   80 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~   80 (289)
                      -|+|||+ |..|...|..+++.|+  +++++|.
T Consensus         3 DViIIGg-GpaGl~AAi~aar~G~--~v~iie~   32 (184)
T d1fl2a1           3 DVLIVGS-GPAGAAAAIYSARKGI--RTGLMGE   32 (184)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTTTC--CEEEECS
T ss_pred             cEEEECc-CHHHHHHHHHHHHcCC--eEEEEEE
Confidence            4899999 9999999999999998  7888875

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.18  E-value=0.27  Score=43.40  Aligned_cols=32  Identities=28%  Similarity=0.379  Sum_probs=28.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHh------CCCccEEEEEeCCC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKI------NPLVSVLHLYDVVN   82 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~------~g~~~eI~LvD~~~   82 (289)
                      =|+|||| |..|++.|..|++      .|+  +|+|+|...
T Consensus        34 DViIVGg-GPAGlsaA~~LA~l~~~~~~Gl--~VlllEK~~   71 (380)
T d2gmha1          34 DVVIVGA-GPAGLSAATRLKQLAAQHEKDL--RVCLVEKAA   71 (380)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHHHHTTCCC--CEEEECSSS
T ss_pred             CEEEECC-CHHHHHHHHHHHhhhhhhcCCC--EEEEEcCCC
Confidence            4999999 9999999999986      788  999999865

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=85.37  E-value=1.1  Score=34.12  Aligned_cols=73  Identities=22%  Similarity=0.271  Sum_probs=44.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcccCCceEEEEecC-CCHHhhh-----CCCCE
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQ-QQLEDAL-----TGMDI  117 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~~~~~~v~~~~~t-~d~~eal-----~~aDi  117 (289)
                      +..+|.|.|+ |-+|...+..++..|. ..|+..|.++. ...+.++.-.    .+-.+... ++..+.+     .++|+
T Consensus        28 ~G~tVlI~Ga-GGvG~~aiq~ak~~G~-~~vi~~~~~~~k~~~ak~lGa~----~~i~~~~~~~~~~~~~~~~~~~g~D~  101 (176)
T d2fzwa2          28 PGSVCAVFGL-GGVGLAVIMGCKVAGA-SRIIGVDINKDKFARAKEFGAT----ECINPQDFSKPIQEVLIEMTDGGVDY  101 (176)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHHHTCS----EEECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred             CCCEEEEecc-hhHHHHHHHHHHHHhc-CceEEEcccHHHHHHHHHhCCc----EEEeCCchhhHHHHHHHHHcCCCCcE
Confidence            4568999998 8899988888877774 47888888762 2233443321    11111111 1222222     67999


Q ss_pred             EEEcCC
Q 022947          118 VIIPAG  123 (289)
Q Consensus       118 VIitag  123 (289)
                      ||.+.|
T Consensus       102 vid~~G  107 (176)
T d2fzwa2         102 SFECIG  107 (176)
T ss_dssp             EEECSC
T ss_pred             eeecCC
Confidence            999976

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.29  E-value=0.32  Score=36.88  Aligned_cols=33  Identities=15%  Similarity=0.210  Sum_probs=28.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV   80 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~   80 (289)
                      +.++|.|||+ |.+|..-+..|+..|-  +|.+++.
T Consensus        12 ~gkrvLViGg-G~va~~ka~~Ll~~GA--~VtVvap   44 (150)
T d1kyqa1          12 KDKRILLIGG-GEVGLTRLYKLMPTGC--KLTLVSP   44 (150)
T ss_dssp             TTCEEEEEEE-SHHHHHHHHHHGGGTC--EEEEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeC
Confidence            3569999999 9999999999999886  8888864

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.28  E-value=0.69  Score=36.72  Aligned_cols=65  Identities=23%  Similarity=0.332  Sum_probs=43.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-chhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita  122 (289)
                      +.+||+|||- |.-|..-|+.|...|+  +|++ -..+ ....  +....+ ...+.      +.+|+.+.||+|.+..
T Consensus        15 k~k~IaViGY-GsQG~AhAlNLrDSG~--~V~V-GLr~gs~s~--~~A~~~-Gf~v~------~~~eA~~~aDiim~L~   80 (182)
T d1np3a2          15 QGKKVAIIGY-GSQGHAHACNLKDSGV--DVTV-GLRSGSATV--AKAEAH-GLKVA------DVKTAVAAADVVMILT   80 (182)
T ss_dssp             HTSCEEEECC-SHHHHHHHHHHHHTTC--CEEE-ECCTTCHHH--HHHHHT-TCEEE------CHHHHHHTCSEEEECS
T ss_pred             CCCEEEEEee-CcHhHHHHhhhhhcCC--CEEE-EcCCCCccH--HHHhhh-ccccc------cHHHHhhhcCeeeeec
Confidence            4569999999 9999999999999998  4433 4433 2111  111111 11221      4679999999999974

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=84.76  E-value=0.4  Score=38.42  Aligned_cols=32  Identities=25%  Similarity=0.269  Sum_probs=29.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      =|+|||+ |..|.+.|..+++.|+  +++++|..+
T Consensus         8 DviIIG~-GPaGlsaA~~aa~~G~--~V~viE~~~   39 (229)
T d1ojta1           8 DVVVLGG-GPGGYSAAFAAADEGL--KVAIVERYK   39 (229)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--eEEEEeccC
Confidence            3889998 9999999999999998  999999765

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=84.37  E-value=1.7  Score=37.32  Aligned_cols=105  Identities=14%  Similarity=0.137  Sum_probs=52.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHh----hhhcccCCceEEEEecCCCHHhhh----CCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTA----DISHMDTNAVVRGFLGQQQLEDAL----TGM  115 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~----DL~~~~~~~~v~~~~~t~d~~eal----~~a  115 (289)
                      +++||.|||+ |. |.. +..++......+|.++|+++. ...+.    ........++++.+.  .|-.+-+    +.-
T Consensus       106 ~pk~VLIiGg-G~-G~~-~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i--~Da~~~l~~~~~~y  180 (312)
T d2b2ca1         106 DPKRVLIIGG-GD-GGI-LREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFC--GDGFEFLKNHKNEF  180 (312)
T ss_dssp             SCCEEEEESC-TT-SHH-HHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEEC--SCHHHHHHHCTTCE
T ss_pred             CCCeEEEeCC-Cc-hHH-HHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEE--chHHHHHHhCCCCC
Confidence            4669999998 64 333 444555554569999999872 11111    111111246777653  2333333    347


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEec
Q 022947          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLIS  163 (289)
Q Consensus       116 DiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~-~p~aiviv~t  163 (289)
                      |+||+-.-.|.  +..       ..-..++..+.+++. .|+++++.=+
T Consensus       181 DvII~D~~dp~--~~~-------~~L~t~eFy~~~~~~L~~~Gi~v~q~  220 (312)
T d2b2ca1         181 DVIITDSSDPV--GPA-------ESLFGQSYYELLRDALKEDGILSSQG  220 (312)
T ss_dssp             EEEEECCC----------------------HHHHHHHHEEEEEEEEEEC
T ss_pred             CEEEEcCCCCC--Ccc-------hhhhhHHHHHHHHhhcCCCcEEEEec
Confidence            89998643331  111       112234444555543 5899876543

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.21  E-value=0.45  Score=38.10  Aligned_cols=34  Identities=9%  Similarity=0.044  Sum_probs=29.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      ++.|||+ |+.|..+|..|.+.+...+|.+++...
T Consensus         6 ~~vIvG~-G~aG~~~A~~Lr~~~~~~~I~li~~e~   39 (213)
T d1m6ia1           6 PFLLIGG-GTAAFAAARSIRARDPGARVLIVSEDP   39 (213)
T ss_dssp             EEEEESC-SHHHHHHHHHHHHHSTTCEEEEEESSS
T ss_pred             CEEEECC-cHHHHHHHHHHHhcCCCCcEEEEeCCC
Confidence            6889998 999999999998888767899998643

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=84.01  E-value=0.53  Score=36.36  Aligned_cols=37  Identities=19%  Similarity=0.196  Sum_probs=27.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      |+||+|.|++|+||.+....+.+.+---+|+.+--+.
T Consensus         1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~   37 (151)
T d1q0qa2           1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGK   37 (151)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESS
T ss_pred             CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence            4589999999999999888777764222666665443

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=83.84  E-value=0.35  Score=38.50  Aligned_cols=33  Identities=15%  Similarity=0.068  Sum_probs=29.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      ..|.|||+ |..|...|..+++.|.  +|.|+|.+.
T Consensus         6 ~DlvVIG~-GpaGl~aA~~aa~~G~--~V~liE~~~   38 (220)
T d1lvla1           6 TTLLIIGG-GPGGYVAAIRAGQLGI--PTVLVEGQA   38 (220)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHHTC--CEEEECSSC
T ss_pred             cCEEEECC-CHHHHHHHHHHHHCCC--cEEEEecCC
Confidence            46899998 9999999999999998  999999765

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=83.74  E-value=0.41  Score=40.46  Aligned_cols=32  Identities=22%  Similarity=0.326  Sum_probs=29.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      =|.|||+ |..|.+.|..|++.|+  +|+|++..+
T Consensus        25 DVvVIG~-G~aGl~aA~~la~~G~--~V~llEk~~   56 (322)
T d1d4ca2          25 DVVIIGS-GGAGLAAAVSARDAGA--KVILLEKEP   56 (322)
T ss_dssp             SEEEECS-SHHHHHHHHHHHTTTC--CEEEECSSS
T ss_pred             eEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            4899998 9999999999999998  899998765

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.36  E-value=0.52  Score=37.18  Aligned_cols=31  Identities=16%  Similarity=0.033  Sum_probs=28.3

Q ss_pred             EEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      |.|||+ |..|.+.|..+++.|.  +++++|...
T Consensus         6 viIIG~-GpaG~~aA~~aar~G~--kV~vIEk~~   36 (221)
T d3grsa1           6 YLVIGG-GSGGLASARRAAELGA--RAAVVESHK   36 (221)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTC--CEEEEESSC
T ss_pred             EEEECC-CHHHHHHHHHHHHCCC--EEEEEeccC
Confidence            789998 9999999999999998  899999765

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.33  E-value=0.38  Score=38.47  Aligned_cols=31  Identities=19%  Similarity=0.206  Sum_probs=28.0

Q ss_pred             EEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      |.|||+ |..|.+.|..+++.|+  ++.++|..+
T Consensus         6 viVIG~-GpaGl~aA~~aa~~G~--kV~viE~~~   36 (235)
T d1h6va1           6 LIIIGG-GSGGLAAAKEAAKFDK--KVMVLDFVT   36 (235)
T ss_dssp             EEEECC-SHHHHHHHHHHGGGCC--CEEEECCCC
T ss_pred             EEEECC-CHHHHHHHHHHHHCCC--eEEEEeccC
Confidence            789998 9999999999999998  899999543

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=83.08  E-value=0.75  Score=34.64  Aligned_cols=48  Identities=17%  Similarity=0.128  Sum_probs=34.3

Q ss_pred             ccccccccccCCCCC-CCEEEEE--cCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           31 SGLGRMDCRAKGGSP-GFKVAVL--GAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        31 ~~~~~~~~~~~~~~~-~~KI~II--GaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      ..|...+.-. +... ...+.|+  |+ |++|..+|..|+..|.  +|.++...+
T Consensus        24 ~v~t~~d~l~-~~~~~~~~vvi~d~gg-g~ig~e~A~~la~~G~--~Vtlv~~~~   74 (156)
T d1djqa2          24 DQLTPEQVMD-GKKKIGKRVVILNADT-YFMAPSLAEKLATAGH--EVTIVSGVH   74 (156)
T ss_dssp             TEECHHHHHH-TCSCCCSEEEEEECCC-SSHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             EEECHHHHhc-CccccCCceEEEecCC-ChHHHHHHHHHHHcCC--eEEEEecCC
Confidence            4555555432 2233 3445554  98 9999999999999997  999998866

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=82.77  E-value=0.4  Score=36.93  Aligned_cols=72  Identities=13%  Similarity=0.120  Sum_probs=42.7

Q ss_pred             CCEEEEEcCCCc--cHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEc
Q 022947           46 GFKVAVLGAAGG--IGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (289)
Q Consensus        46 ~~KI~IIGaaG~--VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIit  121 (289)
                      ..||+++|=..+  |..+++..+..-+. .++++.-...  ......+..+.. ...+..   ++|++++++++|+|..+
T Consensus         4 gl~i~~vGD~~nsrv~~Sli~~l~~~~~-~~~~~~~P~~~~~~~~~~~~~~~~-~~~~~~---~~d~~~a~~~aDvvy~~   78 (160)
T d1ekxa2           4 NLHVAMVGDLKYGRTVHSLTQALAKFDG-NRFYFIAPDALAMPQYILDMLDEK-GIAWSL---HSSIEEVMAEVDILYMT   78 (160)
T ss_dssp             SCEEEEESCTTTCHHHHHHHHHHTTSSS-CEEEEECCGGGCCCHHHHHHHHHT-TCCEEE---CSCSTTTGGGCSEEEEC
T ss_pred             CCEEEEEcCCCccHHHHHHHHHHHHcCC-CeEEeeccchhhhhHHHHHHHhhh-cccccc---ccCHHHHhCcCceEEee
Confidence            569999996233  77777776665543 2566664433  122223333322 233443   35778999999999876


Q ss_pred             C
Q 022947          122 A  122 (289)
Q Consensus       122 a  122 (289)
                      .
T Consensus        79 ~   79 (160)
T d1ekxa2          79 R   79 (160)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=82.59  E-value=0.41  Score=37.60  Aligned_cols=33  Identities=30%  Similarity=0.268  Sum_probs=28.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      .=|.|||+ |.-|.+.|..+++.|+  +++++|..+
T Consensus         4 YDviIIGg-GpAGl~aA~~aar~G~--~V~viE~~~   36 (229)
T d3lada1           4 FDVIVIGA-GPGGYVAAIKSAQLGL--KTALIEKYK   36 (229)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHHTC--CEEEEECCB
T ss_pred             CCEEEECc-CHHHHHHHHHHHHCCC--eEEEEeccc
Confidence            34899998 9999999999999998  899999753

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=82.24  E-value=0.77  Score=38.12  Aligned_cols=36  Identities=19%  Similarity=0.179  Sum_probs=30.5

Q ss_pred             CCCEEEEEcCCC--ccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           45 PGFKVAVLGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        45 ~~~KI~IIGaaG--~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      +.+++.|+||+|  -+|..+|..|++.|.  +|++.|+++
T Consensus         7 ~gK~alVTGass~~GIG~aiA~~la~~Ga--~Vvi~~~~~   44 (297)
T d1d7oa_           7 RGKRAFIAGIADDNGYGWAVAKSLAAAGA--EILVGTWVP   44 (297)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHHTTC--EEEEEEEHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC--EEEEEeCch
Confidence            346899999966  599999999999997  899998754

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.08  E-value=0.16  Score=39.54  Aligned_cols=37  Identities=30%  Similarity=0.301  Sum_probs=25.3

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCC
Q 022947           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV   81 (289)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~   81 (289)
                      +.++||+|||+ |.+|...+..+...+....+.++|..
T Consensus         5 ~~k~kv~iIG~-G~~g~~h~~~l~~~~~~~~~~~~~~~   41 (172)
T d1lc0a1           5 SGKFGVVVVGV-GRAGSVRLRDLKDPRSAAFLNLIGFV   41 (172)
T ss_dssp             CCSEEEEEECC-SHHHHHHHHHHTSHHHHTTEEEEEEE
T ss_pred             CCCcEEEEEcC-CHHHHHHHHHHHhCCCCcEEEEEecc
Confidence            45679999998 99999887766543322345555543

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=82.00  E-value=0.63  Score=36.49  Aligned_cols=32  Identities=22%  Similarity=0.139  Sum_probs=28.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      -|.|||+ |..|.+.|..+++.|.  +++++|...
T Consensus         5 DviVIG~-GpaGl~aA~~aar~G~--kV~vIEk~~   36 (223)
T d1ebda1           5 ETLVVGA-GPGGYVAAIRAAQLGQ--KVTIVEKGN   36 (223)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSC
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--EEEEEecCC
Confidence            4789998 9999999999999998  899999765

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.93  E-value=1.5  Score=37.12  Aligned_cols=104  Identities=13%  Similarity=0.159  Sum_probs=52.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHH---hhhhcc-cCCceEEEEecCCCHHhhh----CCC
Q 022947           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVT---ADISHM-DTNAVVRGFLGQQQLEDAL----TGM  115 (289)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~---~DL~~~-~~~~~v~~~~~t~d~~eal----~~a  115 (289)
                      .+++|.|+|+ |. |. ++..++......+|.++|+++. ...+   ....+. ...++++.+.+  |-.+-+    +.-
T Consensus        78 ~pk~vLiiGg-G~-G~-~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~--Da~~~l~~~~~~y  152 (285)
T d2o07a1          78 NPRKVLIIGG-GD-GG-VLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVG--DGFEFMKQNQDAF  152 (285)
T ss_dssp             SCCEEEEEEC-TT-SH-HHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEES--CHHHHHHTCSSCE
T ss_pred             CcCeEEEeCC-Cc-hH-HHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEc--cHHHHHhcCCCCC
Confidence            4569999998 64 33 3445555544569999999872 1111   111111 12467776532  333434    345


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEe
Q 022947          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLI  162 (289)
Q Consensus       116 DiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~-~p~aiviv~  162 (289)
                      |+||+-.-.|..+.         ..-..++..+.+++. .|++++++-
T Consensus       153 DvIi~D~~~p~~~~---------~~L~t~eF~~~~~~~L~~~Gi~v~q  191 (285)
T d2o07a1         153 DVIITDSSDPMGPA---------ESLFKESYYQLMKTALKEDGVLCCQ  191 (285)
T ss_dssp             EEEEEECC--------------------CHHHHHHHHHEEEEEEEEEE
T ss_pred             CEEEEcCCCCCCcc---------cccccHHHHHHHHHhcCCCCeEEEe
Confidence            89998643222111         111233444445543 589887553

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=81.90  E-value=0.39  Score=35.58  Aligned_cols=56  Identities=27%  Similarity=0.339  Sum_probs=38.9

Q ss_pred             ccccccccccccc--ccccCC--CCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           24 LQIEGESSGLGRM--DCRAKG--GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        24 ~~~~~~~~~~~~~--~~~~~~--~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      |-|+||..|.+|.  -|+..|  +-+.++|+|+|+ |.-+...|..|.  +++++|.++=+.+
T Consensus         1 L~ipge~~~~gkgV~yca~cD~~~~~~k~V~VvGg-GdsA~e~A~~L~--~~a~~V~li~r~~   60 (126)
T d1trba2           1 LGLPSEEAFKGRGVSACATSDGFFYRNQKVAVIGG-GNTAVEEALYLS--NIASEVHLIHRRD   60 (126)
T ss_dssp             CCCHHHHHTBTTTEESCHHHHGGGGTTSEEEEECS-SHHHHHHHHHHT--TTSSEEEEECSSS
T ss_pred             CcCCCHHHhcCCCEEEEEecchHHhCCCEEEEECC-CHHHHHHHHHHh--hcCCcEEEEeecc
Confidence            4577887777773  344322  335679999999 887777775554  5677999997654

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.83  E-value=0.67  Score=34.59  Aligned_cols=53  Identities=17%  Similarity=0.087  Sum_probs=36.2

Q ss_pred             ccccccccc--cccccCC----CCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           27 EGESSGLGR--MDCRAKG----GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        27 ~~~~~~~~~--~~~~~~~----~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      |++..|++|  +-|+.-|    +-+.++|+|+|+ |.-+-..|..|  .+++++|+++=+.+
T Consensus         9 E~~~~f~gkGVsyca~CDg~a~~frgk~V~VvGg-GdsA~e~A~~L--~~~a~~V~li~r~~   67 (130)
T d1vdca2           9 EVLGGFWNRGISACAVCDGAAPIFRNKPLAVIGG-GDSAMEEANFL--TKYGSKVYIIHRRD   67 (130)
T ss_dssp             SSSSCCBTTTEESCHHHHTTSGGGTTSEEEEECC-SHHHHHHHHHH--TTTSSEEEEECSSS
T ss_pred             cccccccCCcEEEEEEecCchHHhCCCEEEEEcC-chHHHHHHHHH--hCCCCcEEEEEecc
Confidence            334446766  4687655    446789999999 87665555444  47778999995543

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=81.56  E-value=0.55  Score=40.14  Aligned_cols=30  Identities=13%  Similarity=0.133  Sum_probs=27.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV   80 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~   80 (289)
                      -|.|||+ |+-|+.+|..|++.|+  .|++++.
T Consensus         4 ~VIVVGs-G~aG~v~A~rLaeaG~--~VlvLEa   33 (367)
T d1n4wa1           4 PAVVIGT-GYGAAVSALRLGEAGV--QTLMLEM   33 (367)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEEES
T ss_pred             eEEEeCc-CHHHHHHHHHHHHCcC--eEEEEec
Confidence            3789998 9999999999999998  8999986

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=81.36  E-value=0.64  Score=38.05  Aligned_cols=31  Identities=19%  Similarity=0.197  Sum_probs=28.6

Q ss_pred             EEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      +.|||+ |..|...|..+++.|.  .|.|+|.+.
T Consensus         4 viVIG~-G~aG~~aA~~aa~~G~--~V~liE~~~   34 (259)
T d1onfa1           4 LIVIGG-GSGGMAAARRAARHNA--KVALVEKSR   34 (259)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             EEEECC-CHHHHHHHHHHHHCCC--eEEEEecCC
Confidence            789998 9999999999999998  999999765

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=80.76  E-value=0.64  Score=39.26  Aligned_cols=30  Identities=23%  Similarity=0.418  Sum_probs=27.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeC
Q 022947           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV   80 (289)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~   80 (289)
                      =|.|||+ |.-|..+|..|+..|+  +|++++.
T Consensus         6 DviIVGs-G~aG~v~A~~La~~G~--kVlvLEa   35 (379)
T d2f5va1           6 DVVIVGS-GPIGCTYARELVGAGY--KVAMFDI   35 (379)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--EEEEECS
T ss_pred             cEEEECc-CHHHHHHHHHHhhCCC--eEEEEec
Confidence            3889998 9999999999999998  8999985

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=80.06  E-value=0.67  Score=38.94  Aligned_cols=31  Identities=19%  Similarity=0.240  Sum_probs=28.3

Q ss_pred             EEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (289)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~   82 (289)
                      |.|||+ |..|.+.|..+++.|.  .|+|++...
T Consensus         8 VvVIG~-G~AGl~AAl~aa~~G~--~V~liEK~~   38 (336)
T d2bs2a2           8 SLVIGG-GLAGLRAAVATQQKGL--STIVLSLIP   38 (336)
T ss_dssp             EEEECC-SHHHHHHHHHHHTTTC--CEEEECSSC
T ss_pred             EEEECc-CHHHHHHHHHHHHCCC--CEEEEecCC
Confidence            899998 9999999999999997  899998765