Citrus Sinensis ID: 022957

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29

MDFRDTMQKVYSWACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYKALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRLKSMRYGSLLKAIYKFTMVRQNYGKSSFNYILLLQVVPHVLLKRYERTRDLDRKNESVT

cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccEEEEEEEccccccHHHHHHHHHHHHHHcccEEEEEccHHHHHHcHHHHHHHcccccHHHHHcccccccccccEEEEEEEccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccccccEEEEEcccccccccccHHHHHHHHEEccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccc

cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHccccccccccEEEEEEEccccccHHHHHHHHHHHHHccccEEEEEEcccccHccHHHHHHHccccccHHccccccccccccEEEEEEEEccccHHHHHHHHHHHHHHHHHHHccccccccHccccHHHHHHHHHHccccccccEEEEEccccccccccccEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccccccccc

MDFRDTMQKVYSWACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKrykaldidKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKlnnatlfeeagesnllldhkhitlefasfpdgKEAVAKAANLLFMKYVKlggsgkiqeekIFTEAHMSEALRavgckgpepdlllvygpvrchlgfpawrIRYTEIVHMGRLKSMRYGSLLKAIYKFTMVRQNYGKSSFNYILLLQVVPHVLLKRYErtrdldrknesvt

MDFRDTMQKVYSWACQignlglwiiwlliHFAVDLWYFALHIACAIESYLISSGILKRYKALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRLKSMRYGSLLKAIYKFTMVRQNYGKSSFNYILLLQVVPHVLLKRYERTRDLDRKNESVT

*******QKVYSWACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYKALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRLKSMRYGSLLKAIYKFTMVRQNYGKSSFNYILLLQVVPHVLLKRYE*************

*************ACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILK******IDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNN***************HKHITLEFASFPDGKEAVAKAANLLFMKYV***********KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRLKSMRYGSLLKAIYKFTMVRQNYGKSSFNYILLLQVVPHVLLKRYER************

********KVYSWACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYKALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRLKSMRYGSLLKAIYKFTMVRQNYGKSSFNYILLLQVVPHVLLKRYERTR**********

*DFRDTMQKVYSWACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYKALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRLKSMRYGSLLKAIYKFTMVRQNYGKSSFNYILLLQVVPHVLLKRYERT***********

iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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iiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		289	2.2.26 [Sep-21-2011]
Q96E22		293	Nogo-B receptor OS=Homo s	yes	no	0.608	0.600	0.262	5e-13
Q6DHR8		274	Nogo-B receptor OS=Danio	yes	no	0.636	0.671	0.258	1e-10
Q99LJ8		297	Nogo-B receptor OS=Mus mu	yes	no	0.650	0.632	0.256	8e-10
Q9Y7K8		258	Probable undecaprenyl pyr	yes	no	0.674	0.755	0.235	2e-07
Q12063		375	Probable undecaprenyl pyr	yes	no	0.560	0.432	0.242	1e-06

>sp\|Q96E22\|NGBR_HUMAN Nogo-B receptor OS=Homo sapiens GN=NUS1 PE=1 SV=1	Back alignment and function desciption

 Score = 75.1 bits (183), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 93/198 (46%), Gaps = 22/198 (11%)

Query: 72  IVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILK-----------KSKESILGKL 120
           ++ E E+      +  L+ W + +G+ ++ +YD +GI K           K ++ +LG L
Sbjct: 104 VITEVEQEPSFSDIASLVVWCMAVGISYISVYDHQGIFKRNNSRLMDEILKQQQELLG-L 162

Query: 121 NNATLFEEAGESNLLLD---HKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQE 177
           + +    E   SN   D   + H+ ++  S  DGK  + +AA      + +L    + + 
Sbjct: 163 DCSKYSPEFANSNDKDDQVLNCHLAVKVLSPEDGKADIVRAAQ----DFCQLVAQKQKRP 218

Query: 178 EKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRLKSMRYG 237
             +  +  ++  L + GC  P+PDL+L +GPV   LGF  W IR TEIV +    ++ Y 
Sbjct: 219 TDLDVDT-LASLLSSNGC--PDPDLVLKFGPVDSTLGFLPWHIRLTEIVSLPSHLNISYE 275

Query: 238 SLLKAIYKFTMVRQNYGK 255
               A+ ++    Q  GK
Sbjct: 276 DFFSALRQYAACEQRLGK 293

Acts as a specific receptor for the N-terminus of Nogo-B, a neural and cardiovascular regulator. Able to regulate vascular remodeling and angiogenesis. Its similarity with UPP synthase proteins suggests that it may act as a scaffold for the binding of isoprenyl lipids and/or prenylated proteins.
Homo sapiens (taxid: 9606)

>sp\|Q6DHR8\|NGBR_DANRE Nogo-B receptor OS=Danio rerio GN=nus1 PE=2 SV=1	Back alignment and function description

>sp\|Q99LJ8\|NGBR_MOUSE Nogo-B receptor OS=Mus musculus GN=Nus1 PE=2 SV=1	Back alignment and function description

>sp\|Q9Y7K8\|UPPS_SCHPO Probable undecaprenyl pyrophosphate synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nus1 PE=3 SV=1	Back alignment and function description

>sp\|Q12063\|UPPS_YEAST Probable undecaprenyl pyrophosphate synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NUS1 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		289
224077818		254	predicted protein [Populus trichocarpa]	0.878	1.0	0.708	1e-101
359475282		255	PREDICTED: nogo-B receptor-like isoform	0.878	0.996	0.692	1e-100
255556087		243	conserved hypothetical protein [Ricinus	0.823	0.979	0.673	3e-88
363814545		254	uncharacterized protein LOC100796301 [Gl	0.865	0.984	0.587	3e-77
449460714		262	PREDICTED: nogo-B receptor-like [Cucumis	0.820	0.904	0.601	2e-74
297849548		414	predicted protein [Arabidopsis lyrata su	0.882	0.615	0.550	2e-71
356538453		249	PREDICTED: nogo-B receptor-like [Glycine	0.820	0.951	0.583	2e-70
357481057		263	Nogo-B receptor [Medicago truncatula] gi	0.816	0.897	0.552	4e-70
4835781		417	F25C20.9 [Arabidopsis thaliana]	0.875	0.606	0.539	9e-70
357481047		287	Nogo-B receptor [Medicago truncatula] gi	0.854	0.860	0.501	1e-69

>gi\|224077818\|ref\|XP_002305421.1\| predicted protein [Populus trichocarpa] gi\|222848385\|gb\|EEE85932.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 180/254 (70%), Positives = 208/254 (81%)

Query: 1   MDFRDTMQKVYSWACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYK 60
           MDF+D +Q+V     QIGN GL ++W  +H  V  WY  + +A  IESYLISSG+LKRY+
Sbjct: 1   MDFKDEVQRVKFGINQIGNFGLRLVWHSVHLLVRFWYLGVGVANVIESYLISSGLLKRYR 60

Query: 61  ALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKL 120
           ++D+ KLRYLAIVIES++A  I  VIQLLQWL  IGVKH+CLYD EG+LKKSKESIL KL
Sbjct: 61  SIDVGKLRYLAIVIESDDACRISKVIQLLQWLQAIGVKHLCLYDTEGVLKKSKESILAKL 120

Query: 121 NNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI 180
            NATLFEEA E + LLD KH+TLEFAS  DGKEAVAK  N+LFMKY K+  SG  Q+E+I
Sbjct: 121 KNATLFEEADERDSLLDQKHMTLEFASISDGKEAVAKGGNVLFMKYSKVANSGAEQKEQI 180

Query: 181 FTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRLKSMRYGSLL 240
           FTEA+M+EALRAVGC GPEPDLLLVYGP RCHLGFPAWRIRYTEIVHMG LKS+RYGSL+
Sbjct: 181 FTEANMTEALRAVGCGGPEPDLLLVYGPARCHLGFPAWRIRYTEIVHMGPLKSVRYGSLV 240

Query: 241 KAIYKFTMVRQNYG 254
           KAIYKFT+VRQ YG
Sbjct: 241 KAIYKFTIVRQKYG 254

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359475282\|ref\|XP_003631634.1\| PREDICTED: nogo-B receptor-like isoform 1 [Vitis vinifera] gi\|359475284\|ref\|XP_003631635.1\| PREDICTED: nogo-B receptor-like isoform 2 [Vitis vinifera] gi\|297741434\|emb\|CBI32565.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255556087\|ref\|XP_002519078.1\| conserved hypothetical protein [Ricinus communis] gi\|223541741\|gb\|EEF43289.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|363814545\|ref\|NP_001242452.1\| uncharacterized protein LOC100796301 [Glycine max] gi\|255645054\|gb\|ACU23026.1\| unknown [Glycine max]	Back alignment and taxonomy information

>gi\|449460714\|ref\|XP_004148090.1\| PREDICTED: nogo-B receptor-like [Cucumis sativus] gi\|449483980\|ref\|XP_004156749.1\| PREDICTED: nogo-B receptor-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297849548\|ref\|XP_002892655.1\| predicted protein [Arabidopsis lyrata subsp. lyrata] gi\|297338497\|gb\|EFH68914.1\| predicted protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|356538453\|ref\|XP_003537718.1\| PREDICTED: nogo-B receptor-like [Glycine max]	Back alignment and taxonomy information

>gi\|357481057\|ref\|XP_003610814.1\| Nogo-B receptor [Medicago truncatula] gi\|355512149\|gb\|AES93772.1\| Nogo-B receptor [Medicago truncatula]	Back alignment and taxonomy information

>gi\|4835781\|gb\|AAD30247.1\|AC007296_8 F25C20.9 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|357481047\|ref\|XP_003610809.1\| Nogo-B receptor [Medicago truncatula] gi\|355512144\|gb\|AES93767.1\| Nogo-B receptor [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		289
TAIR\|locus:4010713435		254	LEW1 "LEAF WILTING 1" [Arabido	0.875	0.996	0.511	3.4e-61
UNIPROTKB\|F1N8Y0		218	NUS1 "Uncharacterized protein"	0.598	0.793	0.281	1.8e-13
UNIPROTKB\|Q96E22		293	NUS1 "Nogo-B receptor" [Homo s	0.636	0.627	0.269	3.3e-11
UNIPROTKB\|I3LLX5		296	NUS1 "Uncharacterized protein"	0.640	0.625	0.271	2e-10
ZFIN\|ZDB-GENE-040718-48		274	nus1 "nuclear undecaprenyl pyr	0.636	0.671	0.258	8.3e-10
UNIPROTKB\|E2RT93		293	NUS1 "Uncharacterized protein"	0.605	0.597	0.256	2.6e-09
RGD\|1307879		293	Nus1 "nuclear undecaprenyl pyr	0.615	0.607	0.251	1.4e-08
MGI\|MGI:1196365		297	Nus1 "nuclear undecaprenyl pyr	0.650	0.632	0.247	2.2e-07
POMBASE\|SPBC2A9.06c		258	SPBC2A9.06c "di-trans,poly-cis	0.633	0.709	0.243	1e-06
UNIPROTKB\|E1BA08		157	E1BA08 "Uncharacterized protei	0.200	0.369	0.379	1.9e-05

TAIR\|locus:4010713435 LEW1 "LEAF WILTING 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
 Identities = 130/254 (51%), Positives = 167/254 (65%)

Query:     1 MDFRDTMQKVYSWACQXXXXXXXXXXXXXHFAVDLWYFALHIACAIESYLISSGILKRYK 60
             MD   +M+ + +W  Q             H  V LWY    I  AIESY I+ G+ K+Y 
Sbjct:     1 MDSNQSMRLLSAWIGQIGDLGLNLLWRFIHIVVSLWYIVSGIFEAIESYAITLGLNKKYG 60

Query:    61 ALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKL 120
             ++D++KLR LA+V++ E A  +  V++LLQWL  IGVK V L+D++G+LKKSK+ IL  +
Sbjct:    61 SIDLEKLRCLAVVVDIEAAQDVANVVELLQWLTTIGVKQVGLFDSQGLLKKSKDLILETV 120

Query:   121 NNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI 180
               + L EE  E ++  D K I LEF S  D KEAV KAAN+L  +Y+K       + E  
Sbjct:   121 PGSMLLEEI-EKDVAPDGKRIALEFISSSDNKEAVMKAANILLQRYLKSSHPEDDKGEDF 179

Query:   181 FTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRLKSMRYGSLL 240
             FTE+H+++ALR VG     PDLLLVYGP+R HLGFPAWR+RYTEIVHMG LK MRYGSLL
Sbjct:   180 FTESHLNDALRVVGENVHVPDLLLVYGPIRSHLGFPAWRLRYTEIVHMGTLKYMRYGSLL 239

Query:   241 KAIYKFTMVRQNYG 254
             KAI+KFT V QNYG
Sbjct:   240 KAIHKFTGVHQNYG 253

GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=IEA

GO:0006487 "protein N-linked glycosylation" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009645 "response to low light intensity stimulus" evidence=IMP

GO:0019408 "dolichol biosynthetic process" evidence=IMP

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IMP

GO:0045547 "dehydrodolichyl diphosphate synthase activity" evidence=IDA

UNIPROTKB\|F1N8Y0 NUS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q96E22 NUS1 "Nogo-B receptor" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|I3LLX5 NUS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040718-48 nus1 "nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RT93 NUS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

RGD\|1307879 Nus1 "nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:1196365 Nus1 "nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

POMBASE\|SPBC2A9.06c SPBC2A9.06c "di-trans,poly-cis-decaprenylcistransferase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BA08 E1BA08 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		289
PRK14831		249	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14836		253	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14829		243	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14832		253	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14834		249	undecaprenyl pyrophosphate synthase; Provisional	100.0
TIGR00055		226	uppS undecaprenyl diphosphate synthase. Alternate	100.0
PRK14837		230	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14830		251	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14838		242	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14828		256	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14842		241	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14827		296	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14841		233	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14840		250	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14835		275	undecaprenyl pyrophosphate synthase; Provisional	100.0
COG0020		245	UppS Undecaprenyl pyrophosphate synthase [Lipid me	100.0
PRK14833		233	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14839		239	undecaprenyl pyrophosphate synthase; Provisional	100.0
cd00475		221	CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (	100.0
PRK10240		229	undecaprenyl pyrophosphate synthase; Provisional	100.0
PF01255		223	Prenyltransf: Putative undecaprenyl diphosphate sy	100.0
PTZ00349		322	dehydrodolichyl diphosphate synthetase; Provisiona	100.0
KOG1602		271	consensus Cis-prenyltransferase [Lipid transport a	100.0
KOG2818		263	consensus Predicted undecaprenyl diphosphate synth	99.98

>PRK14831 undecaprenyl pyrophosphate synthase; Provisional	Back alignment and domain information

Probab=100.00  E-value=1.6e-54  Score=395.07  Aligned_cols=185  Identities=16%  Similarity=0.256  Sum_probs=163.3

Q ss_pred             CCCCeEEEEEcCCCC--------------CChHHHHHHHHHHHhcCCCEEEEEeeC-CCCCcChHH---HHHHhhhc---
Q 022957           65 DKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNNA---  123 (289)
Q Consensus        65 ~~P~HlaVImdgn~~--------------~g~~~v~~i~~Wc~~~GI~~LTlYd~s-g~lKr~~~~---L~~~l~~~---  123 (289)
                      .+|+|||||||||+|              .|++++.+++.||.++||++||||+|| +||||+.++   ||+++.+.   
T Consensus        19 ~~P~HVaiImDGNrRwA~~~gl~~~~GH~~G~~~l~~i~~~c~~~GI~~vT~yaFS~eN~kR~~~Ev~~Lm~L~~~~l~~   98 (249)
T PRK14831         19 RLPKHVAVIMDGNGRWAKRRGLPRIMGHRRGVDALKDLLRCCKDWGIGALTAYAFSTENWSRPLEEVNFLMTLFERVLRR   98 (249)
T ss_pred             CCCCeEEEecCCcHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecchhhhCcCHHHHHHHHHHHHHHHHH
Confidence            689999999999996              299999999999999999999999998 999999875   56555321   


Q ss_pred             -------CC-----------CCch------hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCcccccc
Q 022957          124 -------TL-----------FEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEK  179 (289)
Q Consensus       124 -------~~-----------~~~~------~~~~~t~~~~~l~l~l~s~ydGR~eIv~a~r~l~~~~~~~~~~~~~di~~  179 (289)
                             ++           +|..      ..++.|+++++++||+|++||||+||++|++++++++ +.|.+++++   
T Consensus        99 ~~~~~~~~~iri~~iG~~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EIv~A~~~l~~~v-~~g~l~~~~---  174 (249)
T PRK14831         99 ELEELMEENVRIRFVGDLDPLPKSLQEEISRSTELTKNNNGIHFNVCTNYGGRQEIVQAARAIAQQV-QQGELDPSE---  174 (249)
T ss_pred             HHHHHHHCCcEEEEEechhhCCHHHHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCChHh---
Confidence                   11           3321      1235689999999999999999999999999999885 677887776   


Q ss_pred             cccHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhheEEecCCC-CCCCHHHHHHHHHHHhhhhhccCCc
Q 022957          180 IFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYGKS  256 (289)
Q Consensus       180 ~i~e~~l~~~L~~~~~~~pdPDLlIrtGg~~rLsgFlpWQiryTEi~~~~~~-p~f~~~df~~AL~~Y~~rerRfGk~  256 (289)
                       ++++.++++|+  ++++|||||+||||||.|||||||||++||||||++.+ |+|++.||.+||.+|++|+||||++
T Consensus       175 -i~e~~~~~~L~--t~~~pdpDLlIRTsGE~RLSnFLlWQ~ayaEl~F~~~lWPdf~~~dl~~al~~y~~R~RRfG~~  249 (249)
T PRK14831        175 -IDENLFESELY--TAGIKDPDLLIRTSGEMRISNFLLWQLAYAEIYVTDVLWPDFDRDEFHKALLDYQSRERRFGGV  249 (249)
T ss_pred             -CCHHHHHHhhc--cCCCCCCCEEEeCCCCccccCchhhhhhceeEEECCCCCCcCCHHHHHHHHHHHHhcccCCCCC
Confidence             88999999998  47899999999999999999999999999999999996 9999999999999999999999984

>PRK14836 undecaprenyl pyrophosphate synthase; Provisional	Back alignment and domain information

>PRK14829 undecaprenyl pyrophosphate synthase; Provisional	Back alignment and domain information

>PRK14832 undecaprenyl pyrophosphate synthase; Provisional	Back alignment and domain information

>PRK14834 undecaprenyl pyrophosphate synthase; Provisional	Back alignment and domain information

>TIGR00055 uppS undecaprenyl diphosphate synthase	Back alignment and domain information

>PRK14837 undecaprenyl pyrophosphate synthase; Provisional	Back alignment and domain information

>PRK14830 undecaprenyl pyrophosphate synthase; Provisional	Back alignment and domain information

>PRK14838 undecaprenyl pyrophosphate synthase; Provisional	Back alignment and domain information

>PRK14828 undecaprenyl pyrophosphate synthase; Provisional	Back alignment and domain information

>PRK14842 undecaprenyl pyrophosphate synthase; Provisional	Back alignment and domain information

>PRK14827 undecaprenyl pyrophosphate synthase; Provisional	Back alignment and domain information

>PRK14841 undecaprenyl pyrophosphate synthase; Provisional	Back alignment and domain information

>PRK14840 undecaprenyl pyrophosphate synthase; Provisional	Back alignment and domain information

>PRK14835 undecaprenyl pyrophosphate synthase; Provisional	Back alignment and domain information

>COG0020 UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]	Back alignment and domain information

>PRK14833 undecaprenyl pyrophosphate synthase; Provisional	Back alignment and domain information

>PRK14839 undecaprenyl pyrophosphate synthase; Provisional	Back alignment and domain information

>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates	Back alignment and domain information

>PRK10240 undecaprenyl pyrophosphate synthase; Provisional	Back alignment and domain information

>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2	Back alignment and domain information

>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional	Back alignment and domain information

>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]	Back alignment and domain information

>KOG2818 consensus Predicted undecaprenyl diphosphate synthase [Lipid transport and metabolism]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		289
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 53.3 bits (127), Expect = 4e-08
 Identities = 45/285 (15%), Positives = 90/285 (31%), Gaps = 76/285 (26%)

Query: 14  ACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYKALDIDKLR--YLA 71
                   L II   I   +  W    H+ C   + +I S +      L+  + R  +  
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL----NVLEPAEYRKMFDR 377

Query: 72  IVIESEEAYHIPA-VIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNATLFEEAG 130
           + +    A HIP  ++ L+ W                ++K     ++ KL+  +L E+  
Sbjct: 378 LSVFPPSA-HIPTILLSLI-W--------------FDVIKSDVMVVVNKLHKYSLVEKQP 421

Query: 131 ESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEAL 190
           + + +     I LE     + + A+ ++   +   Y                        
Sbjct: 422 KESTISIP-SIYLELKVKLENEYALHRS---IVDHY---------------------NIP 456

Query: 191 RAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRLKSMRYGSLLKAIY---KFT 247
           +        P  L  Y     H+G            H+  ++     +L + ++   +F 
Sbjct: 457 KTFDSDDLIPPYLDQY--FYSHIGH-----------HLKNIEHPERMTLFRMVFLDFRFL 503

Query: 248 MVRQNYGKSSFNYI-----LLLQVVPHVLLKRYER-TRDLDRKNE 286
             +  +  +++N        L Q      LK Y+    D D K E
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQ------LKFYKPYICDNDPKYE 542

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		289
3sgv_B		253	Undecaprenyl pyrophosphate synthase; alpha/beta, t	100.0
4h8e_A		256	Undecaprenyl pyrophosphate synthase; alpha-helix,	100.0
1f75_A		249	Undecaprenyl pyrophosphate synthetase; parallel be	100.0
3qas_B		253	Undecaprenyl pyrophosphate synthase; alpha-helix,	100.0
2vg3_A		284	Undecaprenyl pyrophosphate synthetase; transferase	100.0
2d2r_A		245	Undecaprenyl pyrophosphate synthase; prenyltransfe	100.0
3ugs_B		225	Undecaprenyl pyrophosphate synthase; niaid, csgid,	100.0
2vg0_A		227	Short-chain Z-isoprenyl diphosphate synthetase; pe	100.0

>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...	Back alignment and structure

Probab=100.00  E-value=1.4e-57  Score=413.15  Aligned_cols=193  Identities=17%  Similarity=0.225  Sum_probs=152.6

Q ss_pred             hhcCCCCCCeEEEEEcCCCC--------------CChHHHHHHHHHHHhcCCCEEEEEeeC-CCCCcChHH---HHHHhh
Q 022957           60 KALDIDKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLN  121 (289)
Q Consensus        60 ~~~~~~~P~HlaVImdgn~~--------------~g~~~v~~i~~Wc~~~GI~~LTlYd~s-g~lKr~~~~---L~~~l~  121 (289)
                      ...+.++|+|||||||||+|              .|++++.+++.||.++||++||||+|| +||||+.++   ||+++.
T Consensus        11 ~~~~~~iP~HVAiIMDGNrRwAk~rgl~r~~GH~~G~~~l~~i~~~c~~lGI~~lTlYaFStENwkRp~~EV~~Lm~L~~   90 (253)
T 3sgv_B           11 EKLPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFV   90 (253)
T ss_dssp             --CCTTCCSEEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECC-----------CHHHHHHHH
T ss_pred             cccCCCCCCEEEEEecCcHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEchhccCCCHHHHHHHHHHHH
Confidence            44556789999999999986              299999999999999999999999997 999999864   776654


Q ss_pred             hc----------CC-----------CCch------hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCc
Q 022957          122 NA----------TL-----------FEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGK  174 (289)
Q Consensus       122 ~~----------~~-----------~~~~------~~~~~t~~~~~l~l~l~s~ydGR~eIv~a~r~l~~~~~~~~~~~~  174 (289)
                      ..          ++           +|..      ..++.|++|++++||+|++||||+||++|+|++++++ +.|.+++
T Consensus        91 ~~l~~~~~~l~~~~vrvr~iGd~~~Lp~~l~~~i~~ae~~T~~n~~~~lnia~~YggR~EI~~Avr~ia~~v-~~g~l~~  169 (253)
T 3sgv_B           91 WALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKV-QQGNLQP  169 (253)
T ss_dssp             TTHHHHHHHHHHTTCEEEEESCGGGSCHHHHHHHHHHHHHHTTCCSCEEEEESSCCHHHHHHHHHHHHHHHH-HHTSSCG
T ss_pred             HHHHHHHHHHHHCCeEEEEEeehhhCCHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCCh
Confidence            21          11           3321      1345699999999999999999999999999999886 6778888


Q ss_pred             ccccccccHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhheEEecCCC-CCCCHHHHHHHHHHHhhhhhcc
Q 022957          175 IQEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNY  253 (289)
Q Consensus       175 ~di~~~i~e~~l~~~L~~~~~~~pdPDLlIrtGg~~rLsgFlpWQiryTEi~~~~~~-p~f~~~df~~AL~~Y~~rerRf  253 (289)
                      ++    ++|+.|+++|++  .++|||||+||||||.|||||||||++||||||++.+ |||++.||.+||.+||+|+|||
T Consensus       170 ~~----I~e~~i~~~L~t--~~~PdpDLlIRTsGE~RLSnFLLWQ~aYsElyFtd~lWPdF~~~dl~~Ai~~yq~R~RRf  243 (253)
T 3sgv_B          170 DQ----IDEEMLNQHVCM--HELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRERRF  243 (253)
T ss_dssp             GG----CCHHHHHTTSTT--TTSCCCCEEEEESSCCCCTTSCSGGGTTCEEEECCSCGGGCCHHHHHHHHHHHHHHC---
T ss_pred             hh----CCHHHHHHhhcc--cCCCCCcEEEEecCCCcccCchHHHHcCEEEEECCCCCccCCHHHHHHHHHHHHhhhccC
Confidence            87    899999999994  7899999999999999999999999999999999996 9999999999999999999999


Q ss_pred             CCcchh
Q 022957          254 GKSSFN  259 (289)
Q Consensus       254 Gk~~~~  259 (289)
                      |+++.+
T Consensus       244 G~~~~~  249 (253)
T 3sgv_B          244 GGTEPG  249 (253)
T ss_dssp             ------
T ss_pred             CCCccc
Confidence            998654

PyMOL of 3sgv

>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}	Back alignment and structure

>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1	Back alignment and structure

>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A*	Back alignment and structure

>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A	Back alignment and structure

>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A	Back alignment and structure

>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0	Back alignment and structure

>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		289
d1ueha_		228	c.101.1.1 (A:) Undecaprenyl diphosphate synthase {	9e-04

>d1ueha_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase {Escherichia coli [TaxId: 562]} Length = 228	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Undecaprenyl diphosphate synthase
superfamily: Undecaprenyl diphosphate synthase
family: Undecaprenyl diphosphate synthase
domain: Undecaprenyl diphosphate synthase
species: Escherichia coli [TaxId: 562]

 Score = 37.4 bits (86), Expect = 9e-04
 Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 8/111 (7%)

Query: 137 DHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVGCK 196
            +  +TL  A+   G+  + +    L  K  +    G +Q ++I               +
Sbjct: 121 GNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQ----GNLQPDQID---EEMLNQHVCMHE 173

Query: 197 GPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKF 246
               DL++  G       F  W+I Y E+     L           A+  F
Sbjct: 174 LAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAF 224

PyMOL of d1ueha_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		289
d1ueha_		228	Undecaprenyl diphosphate synthase {Escherichia col	100.0
d1f75a_		229	Undecaprenyl diphosphate synthase {Micrococcus lut	100.0

>d1ueha_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Undecaprenyl diphosphate synthase
superfamily: Undecaprenyl diphosphate synthase
family: Undecaprenyl diphosphate synthase
domain: Undecaprenyl diphosphate synthase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.3e-52  Score=371.44  Aligned_cols=181  Identities=17%  Similarity=0.213  Sum_probs=149.6

Q ss_pred             CCCCCCeEEEEEcCCCC--------------CChHHHHHHHHHHHhcCCCEEEEEeeC-CCCCcChHH---HHHHhhhc-
Q 022957           63 DIDKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNNA-  123 (289)
Q Consensus        63 ~~~~P~HlaVImdgn~~--------------~g~~~v~~i~~Wc~~~GI~~LTlYd~s-g~lKr~~~~---L~~~l~~~-  123 (289)
                      +...|+|||||||||+|              .|++++.+++.||.+.||++||||+|| +||+|+.++   ||+++... 
T Consensus         2 p~~~P~HiaiImDGNrRwAk~~gl~~~~GH~~G~~~l~~ii~~~~~~gI~~lTvYaFStEN~~R~~~Ev~~Lm~l~~~~l   81 (228)
T d1ueha_           2 PAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWAL   81 (228)
T ss_dssp             CTTCCCEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEC--------------CHHHHHHH
T ss_pred             CCCCCCEEEEeccCCHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHcCCcEEEeehhhhhhcccccchhHHHHHHHHHHH
Confidence            45689999999999986              289999999999999999999999997 999999875   55444321 


Q ss_pred             ---------C-----------CCCch------hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCcccc
Q 022957          124 ---------T-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQE  177 (289)
Q Consensus       124 ---------~-----------~~~~~------~~~~~t~~~~~l~l~l~s~ydGR~eIv~a~r~l~~~~~~~~~~~~~di  177 (289)
                               +           .+|..      ..++.|+++++++|++|.+||||+||++|++++++++ +.|.+.+++ 
T Consensus        82 ~~~~~~~~~~~i~i~~iG~~~~lp~~~~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~~~~~~~~-~~~~~~~~~-  159 (228)
T d1ueha_          82 DSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKV-QQGNLQPDQ-  159 (228)
T ss_dssp             HHTHHHHHHTTCEEEEESCCTTSCHHHHHHHHHHHHHHTTCCSCEEEEEESCCHHHHHHHHHHHHHHHH-HTTSCCGGG-
T ss_pred             HHhHHHHHhccEEEEEECCcchhhhhhhhhhhhHHHhccCCCCceEEEEeccccchHHHHHHHHHHHHH-HhCCCCHhH-
Confidence                     1           13321      1245689999999999999999999999999998885 778888887 


Q ss_pred             cccccHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhheEEecCCC-CCCCHHHHHHHHHHHhhhh
Q 022957          178 EKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVR  250 (289)
Q Consensus       178 ~~~i~e~~l~~~L~~~~~~~pdPDLlIrtGg~~rLsgFlpWQiryTEi~~~~~~-p~f~~~df~~AL~~Y~~re  250 (289)
                         ++++.+.++|++  +++|||||+|||||+.|||||||||++||||||++++ |||++.||.+||.+|++|+
T Consensus       160 ---i~~~~~~~~l~~--~~~pdpDLlIRTsGe~RLSnFLlWQ~aysEl~F~d~lWPdf~~~dl~~al~~y~~R~  228 (228)
T d1ueha_         160 ---IDEEMLNQHVCM--HELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRE  228 (228)
T ss_dssp             ---CCHHHHHTTSTT--TTSCCCCEEEECSSCCSCTTSSCGGGTTCEEEECCSCGGGCCHHHHHHHHHHHHTCC
T ss_pred             ---hhhhheeccccc--CCCCCCcEEEecCCceeccccchhcccceeEEECCCCCCcCCHHHHHHHHHHHHccC
Confidence               889999999984  7999999999999999999999999999999999997 9999999999999999986

PyMOL of d1ueha_

>d1f75a_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase {Micrococcus luteus [TaxId: 1270]}	Back information, alignment and structure