Citrus Sinensis ID: 022958

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
Protein Sequence
MNFNNVKVPKVPGGGAASALIKVGIIGGIGLYAAANSLYNVEGGHRAIMFNRITGVKDKVYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEMKLEGAKK
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHHHHHHHHHHHHHcEEEEcccEEEEEEccccccccccccccEEEEccccccEEEEEEEEEEEEEccccccccccEEEEEEEEEEEEccccHHHHHHHHccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccEEEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccccccccccEEEEEcccccEEEEEcccccccccccccccHcEEEEEEEEcccccHHHcHHHHHHccccccHcHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccEEcccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccEEEEccccEEEEccccccccccc
Coil and Loop (DISEMBL)
mnfnnvkvpkvpgggaASALIKVGIIGGIGLYAAANSlynvegghraIMFNritgvkdkvypegthlmvpwferpviydvrarphlvestsgsrdlqMVKIGLRvltrpvadklPTVYRALGenynervlpSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAnfnialddvsitsltfgkeFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEMKLEGAKK
Flexible Loop (DISEMBL)
MNFNNVKVPKVPGGGAASALIKVGIIGGIGLYAAANSLYNVEGGHRAIMFNRITGVKDKVYPEGTHLMVPWFERPVIYDVRARPHLvestsgsrdlqmVKIGlrvltrpvadklPTVYRALGENYNERVLPSIIHETLKAVVAQYnasqlitqretvSREIRKILTeraanfnialddVSITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEmklegakk
Low Complexity Region (SEG)
MNFNNVKVPKVPGGGAASALIKVgiiggigLYAAANSLYNVEGGHRAIMFNRITGVKDKVYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEMKLEGAKK
Disordered region (IsUnstruct)
*************GGAASALIKVGIIGGIGLYAAANSLYNVEGGHRAIMFNRITGVKDKVYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAA*****AKYIV**********IIR****ATSAQLIGQAIANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNL**********
Disordered Region (DISOPRED)
****************ASALIKVGIIGGIGLYAAANSLYNVEGGHRAIMFNRITGVKDKVYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERAKYIV**************QGEATSAQLIG*AIANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLL*************
Disordered Region (DISEMBL)
MNFNNVKVPKVPGGGAASALIKVGIIGGIGLYAAANSLYNVEGGHRAIMFNRITGVKDKVYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEMKLEGAKK
Disordered Region (DISPRO)
****NVKVPKVPGGGAASALIKVGIIGGIGLYAAANSLYNVEGGHRAIMFNRITGVKDKVYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQE********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNFNNVKVPKVPGGGAASALIKVGIIGGIGLYAAANSLYNVEGGHRAIMFNRITGVKDKVYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAxxxxxxxxxxxxxxxxxxxxxKRSAIIRAQGEATSAQLIGQAIANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEMKLEGAKK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	289	2.2.26 [Sep-21-2011]
Q9ZNT7	286	Prohibitin-2, mitochondri	yes	no	0.989	1.0	0.829	1e-134
O49460	288	Prohibitin-1, mitochondri	no	no	0.979	0.982	0.876	1e-132
Q9SIL6	286	Prohibitin-6, mitochondri	no	no	0.972	0.982	0.821	1e-130
Q9FFH5	278	Prohibitin-7, mitochondri	no	no	0.961	1.0	0.769	1e-123
Q54Q31	293	Prohibitin-2 OS=Dictyoste	yes	no	0.948	0.935	0.579	6e-88
A9UMS3	301	Prohibitin-2 OS=Xenopus t	yes	no	0.944	0.906	0.547	1e-86
Q5XIH7	299	Prohibitin-2 OS=Rattus no	yes	no	0.937	0.906	0.545	3e-85
O35129	299	Prohibitin-2 OS=Mus muscu	yes	no	0.937	0.906	0.545	3e-85
Q99623	299	Prohibitin-2 OS=Homo sapi	yes	no	0.937	0.906	0.545	3e-85
Q2HJ97	299	Prohibitin-2 OS=Bos tauru	yes	no	0.937	0.906	0.545	9e-85

>sp|Q9ZNT7|PHB2_ARATH Prohibitin-2, mitochondrial OS=Arabidopsis thaliana GN=PHB2 PE=1 SV=1

 Score =  478 bits (1231), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 239/288 (82%), Positives = 267/288 (92%), Gaps = 2/288 (0%)

Query: 1   MNFNNVKVPKVPGGGAASALIKVGIIGGIGLYAAANSLYNVEGGHRAIMFNRITGVKDKV 60
           M+FN  KVP +PG  A SAL+KV +IGG+G+YA  NSLYNV+GGHRA+MFNR+TG+K+KV
Sbjct: 1   MSFN--KVPNIPGAPALSALLKVSVIGGLGVYALTNSLYNVDGGHRAVMFNRLTGIKEKV 58

Query: 61  YPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRA 120
           YPEGTH MVPWFERP+IYDVRARP+LVEST+GS DLQMVKIGLRVLTRP+ D+LP +YR 
Sbjct: 59  YPEGTHFMVPWFERPIIYDVRARPYLVESTTGSHDLQMVKIGLRVLTRPMGDRLPQIYRT 118

Query: 121 LGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVS 180
           LGENY+ERVLPSIIHETLKAVVAQYNASQLITQRE VSREIRKILTERA+NF+IALDDVS
Sbjct: 119 LGENYSERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRKILTERASNFDIALDDVS 178

Query: 181 ITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIA 240
           IT+LTFGKEFT+AIEAKQVAAQEAERAK+IVEKAEQD+RSA+IRAQGEA SAQLIGQAIA
Sbjct: 179 ITTLTFGKEFTAAIEAKQVAAQEAERAKFIVEKAEQDRRSAVIRAQGEAKSAQLIGQAIA 238

Query: 241 NNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEMKLEGAK 288
           NN AFITLRKIEAAREIAQTIA SANKV+L+S+DLLLNLQEM LE  K
Sbjct: 239 NNQAFITLRKIEAAREIAQTIAQSANKVYLSSNDLLLNLQEMNLEPKK 286

Prohibitin probably acts as a holdase/unfoldase for the stabilization of newly synthesized mitochondrial proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|O49460|PHB1_ARATH Prohibitin-1, mitochondrial OS=Arabidopsis thaliana GN=PHB1 PE=1 SV=1

 Score =  471 bits (1213), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 248/283 (87%), Positives = 271/283 (95%)

Query: 3   FNNVKVPKVPGGGAASALIKVGIIGGIGLYAAANSLYNVEGGHRAIMFNRITGVKDKVYP 62
            NNVKVPK+PGGGA S L+KVGIIGG+GLY A +SLYNVEGGHRAIMFNR+ G+KDKVYP
Sbjct: 1   MNNVKVPKIPGGGAISTLLKVGIIGGLGLYGATHSLYNVEGGHRAIMFNRLVGIKDKVYP 60

Query: 63  EGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALG 122
           EGTHLM+PWFERPVIYDVRARP+LVESTSGSRDLQMVKIGLRVLTRP+AD+LP +YR+LG
Sbjct: 61  EGTHLMIPWFERPVIYDVRARPYLVESTSGSRDLQMVKIGLRVLTRPMADQLPEIYRSLG 120

Query: 123 ENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSIT 182
           ENY+ERVLPSII+ETLKAVVAQYNASQLITQRE VSREIRKILTERAANFN+ALDDVSIT
Sbjct: 121 ENYSERVLPSIINETLKAVVAQYNASQLITQREAVSREIRKILTERAANFNVALDDVSIT 180

Query: 183 SLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANN 242
           +LTFGKEFT+AIEAKQVAAQEAERAK+IVEKAEQDKRSA+IRAQGEA SAQLIGQAIANN
Sbjct: 181 NLTFGKEFTAAIEAKQVAAQEAERAKFIVEKAEQDKRSAVIRAQGEAKSAQLIGQAIANN 240

Query: 243 PAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEMKLE 285
            AFITLRKIEAAREIAQTIA+SANKV+L+SDDLLLNLQ M L+
Sbjct: 241 QAFITLRKIEAAREIAQTIANSANKVYLSSDDLLLNLQGMNLD 283

Prohibitin probably acts as a holdase/unfoldase for the stabilization of newly synthesized mitochondrial proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIL6|PHB6_ARATH Prohibitin-6, mitochondrial OS=Arabidopsis thaliana GN=PHB6 PE=1 SV=1

 Score =  466 bits (1198), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 234/285 (82%), Positives = 263/285 (92%), Gaps = 4/285 (1%)

Query: 1   MNFNNVKVPKVPGGGAASALIKVGIIGGIGLYAAANSLYNVEGGHRAIMFNRITGVKDKV 60
           MNF NVKVPK PGGG  +A++    IGG+ LY A ++LYNV+GGHRAI+FNR+ G+KDKV
Sbjct: 1   MNFKNVKVPKGPGGGVIAAVV----IGGLSLYGATHTLYNVDGGHRAIVFNRLVGIKDKV 56

Query: 61  YPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRA 120
           YPEGTHLM+PWFERP+IYDVRA+P+LVESTSGSRDLQMVKIGLRVLTRP+AD+LP VYR+
Sbjct: 57  YPEGTHLMIPWFERPIIYDVRAKPYLVESTSGSRDLQMVKIGLRVLTRPMADQLPEVYRS 116

Query: 121 LGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVS 180
           LGENY ERVLPSIIHETLKAVVAQYNASQLITQRE+VSREIRKILT RAANF+IALDDVS
Sbjct: 117 LGENYRERVLPSIIHETLKAVVAQYNASQLITQRESVSREIRKILTLRAANFHIALDDVS 176

Query: 181 ITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIA 240
           IT LTFGKEFT+AIE KQVAAQEAERAK+IVEKAEQDKRSA+IRA+GEA SAQLIGQAIA
Sbjct: 177 ITGLTFGKEFTAAIEGKQVAAQEAERAKFIVEKAEQDKRSAVIRAEGEAKSAQLIGQAIA 236

Query: 241 NNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEMKLE 285
           NN AF+TLRKIEAAREIAQTI+ SANKV+L+S+DLLLNLQ M L+
Sbjct: 237 NNQAFLTLRKIEAAREIAQTISRSANKVYLSSNDLLLNLQAMDLD 281

Prohibitin probably acts as a holdase/unfoldase for the stabilization of newly synthesized mitochondrial proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFH5|PHB7_ARATH Prohibitin-7, mitochondrial OS=Arabidopsis thaliana GN=PHB7 PE=1 SV=1

 Score =  441 bits (1135), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 214/278 (76%), Positives = 242/278 (87%)

Query: 3   FNNVKVPKVPGGGAASALIKVGIIGGIGLYAAANSLYNVEGGHRAIMFNRITGVKDKVYP 62
            N  KVP VPG  A SAL+K+G+IGG+GLY   +S+YNV+GGHRAI+FNR TG+KD+VYP
Sbjct: 1   MNVKKVPNVPGSPALSALLKLGVIGGLGLYCIGSSMYNVDGGHRAIVFNRFTGIKDRVYP 60

Query: 63  EGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALG 122
           EGTH  +P FER +IYDVR+RP++  S +GS DLQ V IGLRVLTRP+ D+LP +YR LG
Sbjct: 61  EGTHFKIPLFERAIIYDVRSRPYVENSQTGSNDLQTVTIGLRVLTRPMGDRLPEIYRTLG 120

Query: 123 ENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSIT 182
           +NY ERVLPSII+ETLKAVVAQYNAS LITQRE VSREIRKI+TERAA FNIALDDVSIT
Sbjct: 121 QNYGERVLPSIINETLKAVVAQYNASHLITQREAVSREIRKIVTERAAKFNIALDDVSIT 180

Query: 183 SLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANN 242
           +L FGKEFT AIE KQVAAQEAERAK+IVEKAEQDK+SAIIRAQGEA SAQLIGQAIANN
Sbjct: 181 NLKFGKEFTEAIEKKQVAAQEAERAKFIVEKAEQDKKSAIIRAQGEAKSAQLIGQAIANN 240

Query: 243 PAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQ 280
            AFITLRKIEAAREIAQTIA SANKV+LNS DLL++ Q
Sbjct: 241 EAFITLRKIEAAREIAQTIAKSANKVYLNSSDLLISKQ 278

Prohibitin probably acts as a holdase/unfoldase for the stabilization of newly synthesized mitochondrial proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54Q31|PHB2_DICDI Prohibitin-2 OS=Dictyostelium discoideum GN=phbB PE=3 SV=1

 Score =  324 bits (830), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 161/278 (57%), Positives = 211/278 (75%), Gaps = 4/278 (1%)

Query: 1   MNFNNVKVPKVPGGGAASALIKVGIIGGIGLYAAANSLYNVEGGHRAIMFNRITGVKDKV 60
           +NFNN+  PK+P G        +    G     A +SL NVEGGHRAI+FNR  G+K+KV
Sbjct: 8   VNFNNI--PKLPKGSFGGGFGLLA--LGGVGLLALSSLVNVEGGHRAIVFNRFVGIKNKV 63

Query: 61  YPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRA 120
           Y EGTH +VPWFER  IYDVRA+P  + S +GS+DLQMV I +RVL++P   +LP +YR 
Sbjct: 64  YNEGTHFIVPWFERAEIYDVRAKPRSISSLTGSKDLQMVNITIRVLSKPKVSQLPAIYRT 123

Query: 121 LGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVS 180
           LG++Y+ERVLPSI++E LK++VAQ+NASQLITQRE VSR I K L +RA +FNI LDDVS
Sbjct: 124 LGKDYDERVLPSIVNEILKSIVAQFNASQLITQREQVSRLIFKRLVDRAKDFNIELDDVS 183

Query: 181 ITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIA 240
           IT L FG+E+ +AIEAKQVA QEAERA+++VEKA QDKRS I++A+GEA SAQLI  AI 
Sbjct: 184 ITHLNFGREYAAAIEAKQVAQQEAERARFLVEKALQDKRSIIVKAEGEAQSAQLINDAIK 243

Query: 241 NNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLN 278
            +P  + LR +EA++EIA  ++ S NK++++++ LLLN
Sbjct: 244 QSPYLVQLRTLEASKEIAHILSKSPNKLYISNETLLLN 281

Prohibitin probably acts as a holdase/unfoldase for the stabilization of newly synthesized mitochondrial proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|A9UMS3|PHB2_XENTR Prohibitin-2 OS=Xenopus tropicalis GN=phb2 PE=2 SV=1

 Score =  319 bits (818), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 151/276 (54%), Positives = 213/276 (77%), Gaps = 3/276 (1%)

Query: 7   KVPKVPGGGAASALIKVGIIGGIGLYAAANSLYNVEGGHRAIMFNRITGVK-DKVYPEGT 65
           ++P  P G   +  + +G   G   YA   S++ VEGGHRAI FNRI GV+ D +  EG 
Sbjct: 11  RLPAGPRGMGTAMKLLLG--AGAVAYAVKESVFTVEGGHRAIFFNRIGGVQQDTILAEGL 68

Query: 66  HLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENY 125
           H   PWF+ P+IYD+RARP  + S +GS+DLQMV I LRVL+RP+A +LP +Y+ LG +Y
Sbjct: 69  HFRFPWFQYPIIYDIRARPRKISSPTGSKDLQMVNITLRVLSRPLASELPFMYQRLGLDY 128

Query: 126 NERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLT 185
           +ERVLPSI++E LK+VVA++NASQLITQR  VS  IR+ LTERA +F+I LDDV+IT L+
Sbjct: 129 DERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSIILDDVAITELS 188

Query: 186 FGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAF 245
           F +E+T+A+E+KQVA QEA+RA+++VEKA+QD++  I++A+GEA +A++IG A++ NP +
Sbjct: 189 FSREYTAAVESKQVAQQEAQRAQFLVEKAKQDQKQKIVQAEGEAAAAKMIGDALSKNPGY 248

Query: 246 ITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQE 281
           + LR+I AA+ IA+TIA S N+V+LN+D L+LNLQ+
Sbjct: 249 LKLRRIRAAQSIAKTIASSQNRVYLNADSLVLNLQD 284

Acts as a mediator of transcriptional repression by nuclear hormone receptors via recruitment of histone deacetylases. Functions as an estrogen receptor (ER)-selective coregulator that potentiates the inhibitory activities of antiestrogens and represses the activity of estrogens. Competes with NCOA1 for modulation of ER transcriptional activity. Probably involved in regulating mitochondrial respiration activity and in aging.

Xenopus tropicalis (taxid: 8364)

>sp|Q5XIH7|PHB2_RAT Prohibitin-2 OS=Rattus norvegicus GN=Phb2 PE=1 SV=1

 Score =  315 bits (806), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 150/275 (54%), Positives = 215/275 (78%), Gaps = 4/275 (1%)

Query: 10  KVPGG--GAASALIKVGIIGGIGLYAAANSLYNVEGGHRAIMFNRITGVK-DKVYPEGTH 66
           ++P G  G  +AL K+ +  G   Y    S++ VEGGHRAI FNRI GV+ D +  EG H
Sbjct: 11  RLPSGPRGMGTAL-KLLLGAGAVAYGVRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLH 69

Query: 67  LMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYN 126
             +PWF+ P+IYD+RARP  + S +GS+DLQMV I LRVL+RP A +LP++Y+ LG +Y 
Sbjct: 70  FRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQRLGLDYE 129

Query: 127 ERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTF 186
           ERVLPSI++E LK+VVA++NASQLITQR  VS  IR+ LTERA +F++ LDDV+IT L+F
Sbjct: 130 ERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILDDVAITELSF 189

Query: 187 GKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFI 246
            +E+T+A+EAKQVA QEA+RA+++VEKA+Q++R  I++A+GEA +A+++G+A++ NP +I
Sbjct: 190 SREYTAAVEAKQVAQQEAQRAQFLVEKAKQEQRQKIVQAEGEAEAAKMLGEALSKNPGYI 249

Query: 247 TLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQE 281
            LRKI AA+ I++TIA S N+++L +D+L+LNLQ+
Sbjct: 250 KLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQD 284

Acts as a mediator of transcriptional repression by nuclear hormone receptors via recruitment of histone deacetylases. Functions as an estrogen receptor (ER)-selective coregulator that potentiates the inhibitory activities of antiestrogens and represses the activity of estrogens. Competes with NCOA1 for modulation of ER transcriptional activity. Probably involved in regulating mitochondrial respiration activity and in aging.

Rattus norvegicus (taxid: 10116)

>sp|O35129|PHB2_MOUSE Prohibitin-2 OS=Mus musculus GN=Phb2 PE=1 SV=1

 Score =  315 bits (806), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 150/275 (54%), Positives = 215/275 (78%), Gaps = 4/275 (1%)

Query: 10  KVPGG--GAASALIKVGIIGGIGLYAAANSLYNVEGGHRAIMFNRITGVK-DKVYPEGTH 66
           ++P G  G  +AL K+ +  G   Y    S++ VEGGHRAI FNRI GV+ D +  EG H
Sbjct: 11  RLPAGPRGMGTAL-KLLLGAGAVAYGVRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLH 69

Query: 67  LMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYN 126
             +PWF+ P+IYD+RARP  + S +GS+DLQMV I LRVL+RP A +LP++Y+ LG +Y 
Sbjct: 70  FRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQRLGLDYE 129

Query: 127 ERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTF 186
           ERVLPSI++E LK+VVA++NASQLITQR  VS  IR+ LTERA +F++ LDDV+IT L+F
Sbjct: 130 ERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILDDVAITELSF 189

Query: 187 GKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFI 246
            +E+T+A+EAKQVA QEA+RA+++VEKA+Q++R  I++A+GEA +A+++G+A++ NP +I
Sbjct: 190 SREYTAAVEAKQVAQQEAQRAQFLVEKAKQEQRQKIVQAEGEAEAAKMLGEALSKNPGYI 249

Query: 247 TLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQE 281
            LRKI AA+ I++TIA S N+++L +D+L+LNLQ+
Sbjct: 250 KLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQD 284

Acts as a mediator of transcriptional repression by nuclear hormone receptors via recruitment of histone deacetylases. Functions as an estrogen receptor (ER)-selective coregulator that potentiates the inhibitory activities of antiestrogens and represses the activity of estrogens. Competes with NCOA1 for modulation of ER transcriptional activity. Probably involved in regulating mitochondrial respiration activity and in aging.

Mus musculus (taxid: 10090)

>sp|Q99623|PHB2_HUMAN Prohibitin-2 OS=Homo sapiens GN=PHB2 PE=1 SV=2

 Score =  315 bits (806), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 150/275 (54%), Positives = 215/275 (78%), Gaps = 4/275 (1%)

Query: 10  KVPGG--GAASALIKVGIIGGIGLYAAANSLYNVEGGHRAIMFNRITGVK-DKVYPEGTH 66
           ++P G  G  +AL K+ +  G   Y    S++ VEGGHRAI FNRI GV+ D +  EG H
Sbjct: 11  RLPAGPRGMGTAL-KLLLGAGAVAYGVRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLH 69

Query: 67  LMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYN 126
             +PWF+ P+IYD+RARP  + S +GS+DLQMV I LRVL+RP A +LP++Y+ LG +Y 
Sbjct: 70  FRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQRLGLDYE 129

Query: 127 ERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTF 186
           ERVLPSI++E LK+VVA++NASQLITQR  VS  IR+ LTERA +F++ LDDV+IT L+F
Sbjct: 130 ERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILDDVAITELSF 189

Query: 187 GKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFI 246
            +E+T+A+EAKQVA QEA+RA+++VEKA+Q++R  I++A+GEA +A+++G+A++ NP +I
Sbjct: 190 SREYTAAVEAKQVAQQEAQRAQFLVEKAKQEQRQKIVQAEGEAEAAKMLGEALSKNPGYI 249

Query: 247 TLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQE 281
            LRKI AA+ I++TIA S N+++L +D+L+LNLQ+
Sbjct: 250 KLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQD 284

Acts as a mediator of transcriptional repression by nuclear hormone receptors via recruitment of histone deacetylases (By similarity). Functions as an estrogen receptor (ER)-selective coregulator that potentiates the inhibitory activities of antiestrogens and represses the activity of estrogens. Competes with NCOA1 for modulation of ER transcriptional activity. Probably involved in regulating mitochondrial respiration activity and in aging.

Homo sapiens (taxid: 9606)

>sp|Q2HJ97|PHB2_BOVIN Prohibitin-2 OS=Bos taurus GN=PHB2 PE=2 SV=1

 Score =  313 bits (802), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 150/275 (54%), Positives = 215/275 (78%), Gaps = 4/275 (1%)

Query: 10  KVPGG--GAASALIKVGIIGGIGLYAAANSLYNVEGGHRAIMFNRITGVK-DKVYPEGTH 66
           ++P G  G  +AL K+ +  G   Y    S++ VEGGHRAI FNRI GV+ D +  EG H
Sbjct: 11  RLPSGPRGMGTAL-KLLLGAGAVAYGIRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLH 69

Query: 67  LMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYN 126
             +PWF+ P+IYD+RARP  + S +GS+DLQMV I LRVL+RP A +LP++Y+ LG +Y 
Sbjct: 70  FRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAMELPSMYQRLGLDYE 129

Query: 127 ERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTF 186
           ERVLPSI++E LK+VVA++NASQLITQR  VS  IR+ LTERA +F++ LDDV+IT L+F
Sbjct: 130 ERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILDDVAITELSF 189

Query: 187 GKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFI 246
            +E+T+A+EAKQVA QEA+RA+++VEKA+Q++R  I++A+GEA +A+++G+A++ NP +I
Sbjct: 190 SREYTAAVEAKQVAQQEAQRAQFLVEKAKQEQRQKIVQAEGEAEAARMLGEALSKNPGYI 249

Query: 247 TLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQE 281
            LRKI AA+ I++TIA S N+++L +D+L+LNLQ+
Sbjct: 250 KLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQD 284

Acts as a mediator of transcriptional repression by nuclear hormone receptors via recruitment of histone deacetylases. Functions as an estrogen receptor (ER)-selective coregulator that potentiates the inhibitory activities of antiestrogens and represses the activity of estrogens. Competes with NCOA1 for modulation of ER transcriptional activity. Probably involved in regulating mitochondrial respiration activity and in aging.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	289
255553601	290	prohibitin, putative [Ricinus communis]	0.986	0.982	0.901	1e-149
224095604	290	predicted protein [Populus trichocarpa]	1.0	0.996	0.882	1e-148
357474343	293	Prohibitin 1-like protein [Medicago trun	1.0	0.986	0.865	1e-145
77416945	296	unknown [Solanum tuberosum]	0.993	0.969	0.843	1e-142
71370259	290	PHB2 [Nicotiana benthamiana]	0.930	0.927	0.895	1e-141
388507410	287	unknown [Medicago truncatula]	0.993	1.0	0.864	1e-141
449444062	290	PREDICTED: prohibitin-2-like isoform 1 [	1.0	0.996	0.865	1e-139
363806944	289	uncharacterized protein LOC100806763 [Gl	1.0	1.0	0.865	1e-138
147771517	291	hypothetical protein VITISV_005691 [Viti	0.993	0.986	0.902	1e-137
296089030	363	unnamed protein product [Vitis vinifera]	0.993	0.790	0.902	1e-137

>gi|255553601|ref|XP_002517841.1| prohibitin, putative [Ricinus communis] gi|223542823|gb|EEF44359.1| prohibitin, putative [Ricinus communis]

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 257/285 (90%), Positives = 277/285 (97%)

Query: 1   MNFNNVKVPKVPGGGAASALIKVGIIGGIGLYAAANSLYNVEGGHRAIMFNRITGVKDKV 60
           MNFNNVKVPKVPGGGAAS+LIK+  IGG+ +YAAANSLYNV+GGHRAIMFNR+ GVKDKV
Sbjct: 1   MNFNNVKVPKVPGGGAASSLIKLSAIGGLVVYAAANSLYNVDGGHRAIMFNRLVGVKDKV 60

Query: 61  YPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRA 120
           YPEGTH MVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVA++LPT+YR 
Sbjct: 61  YPEGTHFMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVANELPTIYRT 120

Query: 121 LGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVS 180
           LGENYNERVLPSIIHETLKAVVAQYNASQLITQRE VSREIRKILTERAANFN+ALDDVS
Sbjct: 121 LGENYNERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRKILTERAANFNLALDDVS 180

Query: 181 ITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIA 240
           IT+LTFGKEFT+AIEAKQVAAQEAERAK+IVEKAEQDK+SA+IRA+GEATSAQLIGQAIA
Sbjct: 181 ITTLTFGKEFTAAIEAKQVAAQEAERAKFIVEKAEQDKKSAVIRAEGEATSAQLIGQAIA 240

Query: 241 NNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEMKLE 285
           NNPAFITLRKIEAAREIA TIA+SANKVFLNS+DLLLNLQ+M+LE
Sbjct: 241 NNPAFITLRKIEAAREIAHTIANSANKVFLNSEDLLLNLQKMELE 285

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224095604|ref|XP_002310417.1| predicted protein [Populus trichocarpa] gi|118484973|gb|ABK94351.1| unknown [Populus trichocarpa] gi|222853320|gb|EEE90867.1| predicted protein [Populus trichocarpa]

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 255/289 (88%), Positives = 272/289 (94%)

Query: 1   MNFNNVKVPKVPGGGAASALIKVGIIGGIGLYAAANSLYNVEGGHRAIMFNRITGVKDKV 60
           MNF NVKVP +PGGGA   LIK+G+IGG+GLY AANSLYNV+GGHRAIMFNRI GVKDKV
Sbjct: 1   MNFKNVKVPNLPGGGAIGTLIKLGVIGGLGLYGAANSLYNVDGGHRAIMFNRIVGVKDKV 60

Query: 61  YPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRA 120
           YPEGTH MVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVAD+LP +YR 
Sbjct: 61  YPEGTHFMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADQLPEIYRT 120

Query: 121 LGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVS 180
           LGENYNERVLPSIIHETLKAVVAQYNASQLITQRE VSREIRKILTERA NFNIALDDVS
Sbjct: 121 LGENYNERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRKILTERAVNFNIALDDVS 180

Query: 181 ITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIA 240
           ITSLTFGKEFT+AIEAKQVAAQEAERAK+IVEKAEQDK+SA+IRA+GEATSAQLIGQAIA
Sbjct: 181 ITSLTFGKEFTAAIEAKQVAAQEAERAKFIVEKAEQDKKSAVIRAEGEATSAQLIGQAIA 240

Query: 241 NNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEMKLEGAKK 289
           NNPAFITLRKIEAAREIA TI++SANKVFL+S DLLLNLQ+M+LE   K
Sbjct: 241 NNPAFITLRKIEAAREIAHTISNSANKVFLDSGDLLLNLQKMELETTGK 289

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357474343|ref|XP_003607456.1| Prohibitin 1-like protein [Medicago truncatula] gi|355508511|gb|AES89653.1| Prohibitin 1-like protein [Medicago truncatula]

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 250/289 (86%), Positives = 271/289 (93%)

Query: 1   MNFNNVKVPKVPGGGAASALIKVGIIGGIGLYAAANSLYNVEGGHRAIMFNRITGVKDKV 60
           MNFNN+K+PKVPGGG  SAL+KV I+GG+ +Y A N+LYNVEGGHRAI+FNRI GVKDKV
Sbjct: 4   MNFNNMKIPKVPGGGGISALLKVSILGGLAVYGATNTLYNVEGGHRAIVFNRIVGVKDKV 63

Query: 61  YPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRA 120
           YPEGTH+M+PWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPV D+LPTVYR 
Sbjct: 64  YPEGTHIMIPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVPDQLPTVYRT 123

Query: 121 LGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVS 180
           LGENYNERVLPSIIHETLK+VVAQYNASQLITQRE VSREIRKILTERA+ FNIALDDVS
Sbjct: 124 LGENYNERVLPSIIHETLKSVVAQYNASQLITQREAVSREIRKILTERASQFNIALDDVS 183

Query: 181 ITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIA 240
           ITSLTFG+EFT+AIEAKQVAAQEAERAK++VEKAEQDKRSAIIRAQGEATSAQLIGQAIA
Sbjct: 184 ITSLTFGREFTAAIEAKQVAAQEAERAKFVVEKAEQDKRSAIIRAQGEATSAQLIGQAIA 243

Query: 241 NNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEMKLEGAKK 289
           NNPAFI LRKIEAAREIA  IA+SANKVFLNS+DLLLNLQE+  E + K
Sbjct: 244 NNPAFIDLRKIEAAREIAVLIANSANKVFLNSEDLLLNLQELTSESSGK 292

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|77416945|gb|ABA81868.1| unknown [Solanum tuberosum]

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 248/294 (84%), Positives = 269/294 (91%), Gaps = 7/294 (2%)

Query: 1   MNFNNVKVPKVPGGGAASALIKVGIIGGIGLYAAANSLYNVEGGHRAIMFNRITGVKDKV 60
           MN N+VKVPK+PGGGA SALIK G+I G+G+Y  ANSLYNVEGGHRAI+FNRI GVK+KV
Sbjct: 1   MNLNSVKVPKMPGGGATSALIKFGVIAGLGVYGVANSLYNVEGGHRAIVFNRIGGVKNKV 60

Query: 61  YPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRA 120
           YPEGTH M+PWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPV+D+LPTVYR+
Sbjct: 61  YPEGTHFMIPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVSDQLPTVYRS 120

Query: 121 LGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVS 180
           LGENYNERVLPSIIHETLKAVVAQYNASQLITQRE VSREIRKILTERAANFNIALDDVS
Sbjct: 121 LGENYNERVLPSIIHETLKAVVAQYNASQLITQRENVSREIRKILTERAANFNIALDDVS 180

Query: 181 ITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIA 240
           ITSLTFGKEFT+AIEAKQVAAQEAERAK++VEKAEQDKRSA+IRAQGEA SAQLIGQAIA
Sbjct: 181 ITSLTFGKEFTAAIEAKQVAAQEAERAKFVVEKAEQDKRSAVIRAQGEAKSAQLIGQAIA 240

Query: 241 NNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLL-------NLQEMKLEGA 287
           NNPAFITLRKIEAAREIAQTI+H+ANKV+L++    L        LQE  L+ A
Sbjct: 241 NNPAFITLRKIEAAREIAQTISHAANKVYLSAMICCLTFRTSTWTLQESDLDSA 294

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|71370259|gb|AAZ30377.1| PHB2 [Nicotiana benthamiana]

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 241/269 (89%), Positives = 259/269 (96%)

Query: 1   MNFNNVKVPKVPGGGAASALIKVGIIGGIGLYAAANSLYNVEGGHRAIMFNRITGVKDKV 60
           MN NNVKVPK+PGGGAASALIK+G++ G+G+Y  ANSLYNV+GGHRAI+FNRI GVKDKV
Sbjct: 1   MNLNNVKVPKMPGGGAASALIKLGVVAGLGVYGVANSLYNVDGGHRAIVFNRIIGVKDKV 60

Query: 61  YPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRA 120
           YPEGTH M+PWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPV D+LPTVYR 
Sbjct: 61  YPEGTHFMIPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVPDQLPTVYRT 120

Query: 121 LGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVS 180
           LGENYNERVLPSIIHETLKAVVAQYNASQLITQRE VSREIRKILTERAANFNIALDDVS
Sbjct: 121 LGENYNERVLPSIIHETLKAVVAQYNASQLITQRENVSREIRKILTERAANFNIALDDVS 180

Query: 181 ITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIA 240
           ITSLTFGKEFT+AIEAKQVAAQEAERAK++VEKAEQDKRSAIIRAQGEA SAQLIGQ+IA
Sbjct: 181 ITSLTFGKEFTAAIEAKQVAAQEAERAKFVVEKAEQDKRSAIIRAQGEAKSAQLIGQSIA 240

Query: 241 NNPAFITLRKIEAAREIAQTIAHSANKVF 269
           NNPAFITLRKIEAAREIAQT++H+ANKV+
Sbjct: 241 NNPAFITLRKIEAAREIAQTMSHAANKVY 269

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507410|gb|AFK41771.1| unknown [Medicago truncatula]

 Score =  505 bits (1301), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 248/287 (86%), Positives = 266/287 (92%)

Query: 3   FNNVKVPKVPGGGAASALIKVGIIGGIGLYAAANSLYNVEGGHRAIMFNRITGVKDKVYP 62
            NN+K  KVP GGAAS L K+GIIGGIGLYAAANSLYNVEGGHRAI+FNR+ GVKDKVYP
Sbjct: 1   MNNMKNMKVPSGGAASTLAKLGIIGGIGLYAAANSLYNVEGGHRAIVFNRLVGVKDKVYP 60

Query: 63  EGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALG 122
           EGTH ++PWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRP+  +LPTVYR LG
Sbjct: 61  EGTHFVIPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPLPGQLPTVYRTLG 120

Query: 123 ENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSIT 182
           ENYNERVLPSIIHETLKAVVAQYNASQLITQRE VSREIRKILTERAANFNIALDDVSIT
Sbjct: 121 ENYNERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRKILTERAANFNIALDDVSIT 180

Query: 183 SLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANN 242
           S TFGKEFT+AIEAKQVAAQEAERAK++VEKAEQDKRSA+IRAQGEA SAQLIGQAIANN
Sbjct: 181 SPTFGKEFTAAIEAKQVAAQEAERAKFVVEKAEQDKRSAVIRAQGEAKSAQLIGQAIANN 240

Query: 243 PAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEMKLEGAKK 289
           PAFITLRKIEAAREIA  IA+SANKV+L + DLLLNLQ + L+ +KK
Sbjct: 241 PAFITLRKIEAAREIAHVIANSANKVYLEAGDLLLNLQGINLDPSKK 287

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444062|ref|XP_004139794.1| PREDICTED: prohibitin-2-like isoform 1 [Cucumis sativus] gi|449444064|ref|XP_004139795.1| PREDICTED: prohibitin-2-like isoform 2 [Cucumis sativus] gi|449444066|ref|XP_004139796.1| PREDICTED: prohibitin-2-like isoform 3 [Cucumis sativus] gi|449507448|ref|XP_004163035.1| PREDICTED: prohibitin-2-like isoform 1 [Cucumis sativus] gi|449507452|ref|XP_004163036.1| PREDICTED: prohibitin-2-like isoform 2 [Cucumis sativus] gi|449507457|ref|XP_004163037.1| PREDICTED: prohibitin-2-like isoform 3 [Cucumis sativus]

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 250/289 (86%), Positives = 276/289 (95%)

Query: 1   MNFNNVKVPKVPGGGAASALIKVGIIGGIGLYAAANSLYNVEGGHRAIMFNRITGVKDKV 60
           MN NNVKVPK+PGGGAASAL+K+GIIGG+GLYAA+NSLYNVEGGHRAI+FNR+ G+KDKV
Sbjct: 1   MNLNNVKVPKLPGGGAASALLKIGIIGGLGLYAASNSLYNVEGGHRAIVFNRLVGIKDKV 60

Query: 61  YPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRA 120
           YPEGTHL++PWFERP+IYDVRARP+LVES+SGSRDLQMVKIGLRVLTRP+ ++LPT+YR 
Sbjct: 61  YPEGTHLIIPWFERPIIYDVRARPNLVESSSGSRDLQMVKIGLRVLTRPLPNELPTLYRT 120

Query: 121 LGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVS 180
           LGENYNERVLPSIIHETLK+VVAQYNASQL+TQRE VSREIRK LTERAA FNIALDDVS
Sbjct: 121 LGENYNERVLPSIIHETLKSVVAQYNASQLLTQREAVSREIRKTLTERAAQFNIALDDVS 180

Query: 181 ITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIA 240
           ITSLTFGKEFT+AIEAKQVAAQEAERAK++VEKAEQDKRSAIIRAQGEA S QLIGQA+A
Sbjct: 181 ITSLTFGKEFTAAIEAKQVAAQEAERAKFVVEKAEQDKRSAIIRAQGEAKSGQLIGQAVA 240

Query: 241 NNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEMKLEGAKK 289
           NNPAF+TLRKIEAAREIA TIA+SANKVFLNSDDLLLNLQEM LE + K
Sbjct: 241 NNPAFMTLRKIEAAREIAHTIANSANKVFLNSDDLLLNLQEMSLEPSGK 289

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806944|ref|NP_001242309.1| uncharacterized protein LOC100806763 [Glycine max] gi|255641751|gb|ACU21146.1| unknown [Glycine max]

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 250/289 (86%), Positives = 273/289 (94%)

Query: 1   MNFNNVKVPKVPGGGAASALIKVGIIGGIGLYAAANSLYNVEGGHRAIMFNRITGVKDKV 60
           MN  N+KVP VPGGG  SAL+K+GI+GGIGLYAAANSLYNV+GGHRAI+FNR+ GVKDKV
Sbjct: 1   MNLKNMKVPNVPGGGGISALLKLGIVGGIGLYAAANSLYNVDGGHRAIVFNRLVGVKDKV 60

Query: 61  YPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRA 120
           YPEGTH ++PWFER +IYDVRARPHLVESTSGSRDLQMVKIGLRVLTRP+ ++LPTVYR 
Sbjct: 61  YPEGTHFIIPWFERLIIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPLPNQLPTVYRT 120

Query: 121 LGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVS 180
           LGENYNERVLPSIIHETLKAVVAQYNASQLITQRE VSREIRKILTERAANFNIALDDVS
Sbjct: 121 LGENYNERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRKILTERAANFNIALDDVS 180

Query: 181 ITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIA 240
           ITSLTFGKEFT+AIEAKQVAAQEAERAK++VEKAEQDKRSA+IRAQGEA SAQLIGQAIA
Sbjct: 181 ITSLTFGKEFTAAIEAKQVAAQEAERAKFVVEKAEQDKRSAVIRAQGEAKSAQLIGQAIA 240

Query: 241 NNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEMKLEGAKK 289
           NNPAFITLRKIEAAREIA TI+++ANKV+LNSDDLLLNLQ+M LE  +K
Sbjct: 241 NNPAFITLRKIEAAREIAHTISNAANKVYLNSDDLLLNLQKMNLEPGRK 289

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147771517|emb|CAN66748.1| hypothetical protein VITISV_005691 [Vitis vinifera]

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 259/287 (90%), Positives = 276/287 (96%)

Query: 1   MNFNNVKVPKVPGGGAASALIKVGIIGGIGLYAAANSLYNVEGGHRAIMFNRITGVKDKV 60
           MNFNNVKVPKVPGGGAASALIK+G++GG+GLY A NSLYNVEGGHRAI+FNRI GVKDKV
Sbjct: 1   MNFNNVKVPKVPGGGAASALIKLGVVGGLGLYGAINSLYNVEGGHRAIVFNRIIGVKDKV 60

Query: 61  YPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRA 120
           YPEGTHLM+PWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPV D+LP +YR 
Sbjct: 61  YPEGTHLMIPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVPDQLPAIYRT 120

Query: 121 LGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVS 180
           LGENYNERVLPSIIHETLKAVVAQYNASQLITQRE VSREIRKILTERAANFNIALDDVS
Sbjct: 121 LGENYNERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRKILTERAANFNIALDDVS 180

Query: 181 ITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIA 240
           ITSLTFGKEFT+AIEAKQVAAQEAERAK++VEKAEQDK+SAIIRAQGEA SAQLIGQAIA
Sbjct: 181 ITSLTFGKEFTAAIEAKQVAAQEAERAKFVVEKAEQDKKSAIIRAQGEAKSAQLIGQAIA 240

Query: 241 NNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEMKLEGA 287
           NNPAFITLRKIEA+REIA TI++SAN+VFLNS+DLLLNLQEM LE A
Sbjct: 241 NNPAFITLRKIEASREIAHTISNSANRVFLNSNDLLLNLQEMNLESA 287

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089030|emb|CBI38733.3| unnamed protein product [Vitis vinifera]

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 259/287 (90%), Positives = 276/287 (96%)

Query: 1   MNFNNVKVPKVPGGGAASALIKVGIIGGIGLYAAANSLYNVEGGHRAIMFNRITGVKDKV 60
           MNFNNVKVPKVPGGGAASALIK+G++GG+GLY A NSLYNVEGGHRAI+FNRI GVKDKV
Sbjct: 73  MNFNNVKVPKVPGGGAASALIKLGVVGGLGLYGAINSLYNVEGGHRAIVFNRIIGVKDKV 132

Query: 61  YPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRA 120
           YPEGTHLM+PWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPV D+LP +YR 
Sbjct: 133 YPEGTHLMIPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVPDQLPAIYRT 192

Query: 121 LGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVS 180
           LGENYNERVLPSIIHETLKAVVAQYNASQLITQRE VSREIRKILTERAANFNIALDDVS
Sbjct: 193 LGENYNERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRKILTERAANFNIALDDVS 252

Query: 181 ITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIA 240
           ITSLTFGKEFT+AIEAKQVAAQEAERAK++VEKAEQDK+SAIIRAQGEA SAQLIGQAIA
Sbjct: 253 ITSLTFGKEFTAAIEAKQVAAQEAERAKFVVEKAEQDKKSAIIRAQGEAKSAQLIGQAIA 312

Query: 241 NNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEMKLEGA 287
           NNPAFITLRKIEA+REIA TI++SAN+VFLNS+DLLLNLQEM LE A
Sbjct: 313 NNPAFITLRKIEASREIAHTISNSANRVFLNSNDLLLNLQEMNLESA 359

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	289
TAIR|locus:2121392	288	PHB1 "prohibitin 1" [Arabidops	0.975	0.979	0.858	3.9e-124
TAIR|locus:2024142	286	PHB2 "prohibitin 2" [Arabidops	0.989	1.0	0.815	4.1e-120
TAIR|locus:2054779	286	PHB6 "AT2G20530" [Arabidopsis	0.972	0.982	0.810	5.4e-118
TAIR|locus:2167588	278	PHB7 "AT5G44140" [Arabidopsis	0.955	0.992	0.758	5.8e-105
DICTYBASE|DDB_G0284117	293	phbB "prohibitin" [Dictyosteli	0.948	0.935	0.579	2.2e-80
ZFIN|ZDB-GENE-030131-3141	302	phb2 "prohibitin 2" [Danio rer	0.930	0.890	0.555	4.3e-77
FB|FBgn0010551	338	l(2)03709 "lethal (2) 03709" [	0.923	0.789	0.540	9e-77
UNIPROTKB|J3KPX7	299	PHB2 "Prohibitin-2" [Homo sapi	0.937	0.906	0.541	9e-77
UNIPROTKB|Q99623	299	PHB2 "Prohibitin-2" [Homo sapi	0.937	0.906	0.541	9e-77
MGI|MGI:102520	299	Phb2 "prohibitin 2" [Mus muscu	0.937	0.906	0.541	9e-77

TAIR|locus:2121392 PHB1 "prohibitin 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1220 (434.5 bits), Expect = 3.9e-124, P = 3.9e-124
 Identities = 242/282 (85%), Positives = 264/282 (93%)

Query:     4 NNVKVPKVPGGGAASALIKVXXXXXXXLYAAANSLYNVEGGHRAIMFNRITGVKDKVYPE 63
             NNVKVPK+PGGGA S L+KV       LY A +SLYNVEGGHRAIMFNR+ G+KDKVYPE
Sbjct:     2 NNVKVPKIPGGGAISTLLKVGIIGGLGLYGATHSLYNVEGGHRAIMFNRLVGIKDKVYPE 61

Query:    64 GTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGE 123
             GTHLM+PWFERPVIYDVRARP+LVESTSGSRDLQMVKIGLRVLTRP+AD+LP +YR+LGE
Sbjct:    62 GTHLMIPWFERPVIYDVRARPYLVESTSGSRDLQMVKIGLRVLTRPMADQLPEIYRSLGE 121

Query:   124 NYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITS 183
             NY+ERVLPSII+ETLKAVVAQYNASQLITQRE VSREIRKILTERAANFN+ALDDVSIT+
Sbjct:   122 NYSERVLPSIINETLKAVVAQYNASQLITQREAVSREIRKILTERAANFNVALDDVSITN 181

Query:   184 LTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNP 243
             LTFGKEFT+AIEAKQVAAQEAERAK+IVEKAEQDKRSA+IRAQGEA SAQLIGQAIANN 
Sbjct:   182 LTFGKEFTAAIEAKQVAAQEAERAKFIVEKAEQDKRSAVIRAQGEAKSAQLIGQAIANNQ 241

Query:   244 AFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEMKLE 285
             AFITLRKIEAAREIAQTIA+SANKV+L+SDDLLLNLQ M L+
Sbjct:   242 AFITLRKIEAAREIAQTIANSANKVYLSSDDLLLNLQGMNLD 283

GO:0016020 "membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

TAIR|locus:2024142 PHB2 "prohibitin 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1182 (421.1 bits), Expect = 4.1e-120, P = 4.1e-120
 Identities = 235/288 (81%), Positives = 261/288 (90%)

Query:     1 MNFNNVKVPKVPGGGAASALIKVXXXXXXXLYAAANSLYNVEGGHRAIMFNRITGVKDKV 60
             M+FN  KVP +PG  A SAL+KV       +YA  NSLYNV+GGHRA+MFNR+TG+K+KV
Sbjct:     1 MSFN--KVPNIPGAPALSALLKVSVIGGLGVYALTNSLYNVDGGHRAVMFNRLTGIKEKV 58

Query:    61 YPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRA 120
             YPEGTH MVPWFERP+IYDVRARP+LVEST+GS DLQMVKIGLRVLTRP+ D+LP +YR 
Sbjct:    59 YPEGTHFMVPWFERPIIYDVRARPYLVESTTGSHDLQMVKIGLRVLTRPMGDRLPQIYRT 118

Query:   121 LGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVS 180
             LGENY+ERVLPSIIHETLKAVVAQYNASQLITQRE VSREIRKILTERA+NF+IALDDVS
Sbjct:   119 LGENYSERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRKILTERASNFDIALDDVS 178

Query:   181 ITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIA 240
             IT+LTFGKEFT+AIEAKQVAAQEAERAK+IVEKAEQD+RSA+IRAQGEA SAQLIGQAIA
Sbjct:   179 ITTLTFGKEFTAAIEAKQVAAQEAERAKFIVEKAEQDRRSAVIRAQGEAKSAQLIGQAIA 238

Query:   241 NNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEMKLEGAK 288
             NN AFITLRKIEAAREIAQTIA SANKV+L+S+DLLLNLQEM LE  K
Sbjct:   239 NNQAFITLRKIEAAREIAQTIAQSANKVYLSSNDLLLNLQEMNLEPKK 286

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

GO:0000741 "karyogamy" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

TAIR|locus:2054779 PHB6 "AT2G20530" [Arabidopsis thaliana (taxid:3702)]

 Score = 1162 (414.1 bits), Expect = 5.4e-118, P = 5.4e-118
 Identities = 231/285 (81%), Positives = 259/285 (90%)

Query:     1 MNFNNVKVPKVPGGGAASALIKVXXXXXXXLYAAANSLYNVEGGHRAIMFNRITGVKDKV 60
             MNF NVKVPK PGGG  +A++         LY A ++LYNV+GGHRAI+FNR+ G+KDKV
Sbjct:     1 MNFKNVKVPKGPGGGVIAAVV----IGGLSLYGATHTLYNVDGGHRAIVFNRLVGIKDKV 56

Query:    61 YPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRA 120
             YPEGTHLM+PWFERP+IYDVRA+P+LVESTSGSRDLQMVKIGLRVLTRP+AD+LP VYR+
Sbjct:    57 YPEGTHLMIPWFERPIIYDVRAKPYLVESTSGSRDLQMVKIGLRVLTRPMADQLPEVYRS 116

Query:   121 LGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVS 180
             LGENY ERVLPSIIHETLKAVVAQYNASQLITQRE+VSREIRKILT RAANF+IALDDVS
Sbjct:   117 LGENYRERVLPSIIHETLKAVVAQYNASQLITQRESVSREIRKILTLRAANFHIALDDVS 176

Query:   181 ITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIA 240
             IT LTFGKEFT+AIE KQVAAQEAERAK+IVEKAEQDKRSA+IRA+GEA SAQLIGQAIA
Sbjct:   177 ITGLTFGKEFTAAIEGKQVAAQEAERAKFIVEKAEQDKRSAVIRAEGEAKSAQLIGQAIA 236

Query:   241 NNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEMKLE 285
             NN AF+TLRKIEAAREIAQTI+ SANKV+L+S+DLLLNLQ M L+
Sbjct:   237 NNQAFLTLRKIEAAREIAQTISRSANKVYLSSNDLLLNLQAMDLD 281

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

TAIR|locus:2167588 PHB7 "AT5G44140" [Arabidopsis thaliana (taxid:3702)]

 Score = 1039 (370.8 bits), Expect = 5.8e-105, P = 5.8e-105
 Identities = 210/277 (75%), Positives = 236/277 (85%)

Query:     5 NVK-VPKVPGGGAASALIKVXXXXXXXLYAAANSLYNVEGGHRAIMFNRITGVKDKVYPE 63
             NVK VP VPG  A SAL+K+       LY   +S+YNV+GGHRAI+FNR TG+KD+VYPE
Sbjct:     2 NVKKVPNVPGSPALSALLKLGVIGGLGLYCIGSSMYNVDGGHRAIVFNRFTGIKDRVYPE 61

Query:    64 GTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGE 123
             GTH  +P FER +IYDVR+RP++  S +GS DLQ V IGLRVLTRP+ D+LP +YR LG+
Sbjct:    62 GTHFKIPLFERAIIYDVRSRPYVENSQTGSNDLQTVTIGLRVLTRPMGDRLPEIYRTLGQ 121

Query:   124 NYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITS 183
             NY ERVLPSII+ETLKAVVAQYNAS LITQRE VSREIRKI+TERAA FNIALDDVSIT+
Sbjct:   122 NYGERVLPSIINETLKAVVAQYNASHLITQREAVSREIRKIVTERAAKFNIALDDVSITN 181

Query:   184 LTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNP 243
             L FGKEFT AIE KQVAAQEAERAK+IVEKAEQDK+SAIIRAQGEA SAQLIGQAIANN 
Sbjct:   182 LKFGKEFTEAIEKKQVAAQEAERAKFIVEKAEQDKKSAIIRAQGEAKSAQLIGQAIANNE 241

Query:   244 AFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQ 280
             AFITLRKIEAAREIAQTIA SANKV+LNS DLL++ Q
Sbjct:   242 AFITLRKIEAAREIAQTIAKSANKVYLNSSDLLISKQ 278

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

DICTYBASE|DDB_G0284117 phbB "prohibitin" [Dictyostelium discoideum (taxid:44689)]

 Score = 807 (289.1 bits), Expect = 2.2e-80, P = 2.2e-80
 Identities = 161/278 (57%), Positives = 211/278 (75%)

Query:     1 MNFNNVKVPKVPGGGAASALIKVXXXXXXXLYAAANSLYNVEGGHRAIMFNRITGVKDKV 60
             +NFNN+  PK+P G        +       L  A +SL NVEGGHRAI+FNR  G+K+KV
Sbjct:     8 VNFNNI--PKLPKGSFGGGFGLLALGGVGLL--ALSSLVNVEGGHRAIVFNRFVGIKNKV 63

Query:    61 YPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRA 120
             Y EGTH +VPWFER  IYDVRA+P  + S +GS+DLQMV I +RVL++P   +LP +YR 
Sbjct:    64 YNEGTHFIVPWFERAEIYDVRAKPRSISSLTGSKDLQMVNITIRVLSKPKVSQLPAIYRT 123

Query:   121 LGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVS 180
             LG++Y+ERVLPSI++E LK++VAQ+NASQLITQRE VSR I K L +RA +FNI LDDVS
Sbjct:   124 LGKDYDERVLPSIVNEILKSIVAQFNASQLITQREQVSRLIFKRLVDRAKDFNIELDDVS 183

Query:   181 ITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIA 240
             IT L FG+E+ +AIEAKQVA QEAERA+++VEKA QDKRS I++A+GEA SAQLI  AI 
Sbjct:   184 ITHLNFGREYAAAIEAKQVAQQEAERARFLVEKALQDKRSIIVKAEGEAQSAQLINDAIK 243

Query:   241 NNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLN 278
              +P  + LR +EA++EIA  ++ S NK++++++ LLLN
Sbjct:   244 QSPYLVQLRTLEASKEIAHILSKSPNKLYISNETLLLN 281

GO:0016020 "membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ZFIN|ZDB-GENE-030131-3141 phb2 "prohibitin 2" [Danio rerio (taxid:7955)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 150/270 (55%), Positives = 207/270 (76%)

Query:    13 GGGAASALIKVXXXXXXXLYAAANSLYNVEGGHRAIMFNRITGVK-DKVYPEGTHLMVPW 71
             G   A   +K+        Y    + Y VEGG RA++F+RI G++ D V  EG H  +PW
Sbjct:    23 GPRGAGLGVKLLIGAGALAYGVKEATYTVEGGQRAVIFSRIGGMQMDTVLAEGLHFRMPW 82

Query:    72 FERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLP 131
             F+ P+IYD+RARP  + S +GS+DLQMV IGLRVL+RPVA +LP +Y+ LG++Y+ERVLP
Sbjct:    83 FQYPIIYDIRARPRKISSLTGSKDLQMVNIGLRVLSRPVASQLPIMYQQLGKDYDERVLP 142

Query:   132 SIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFT 191
             SI++E LK+VVA++NASQLITQR  VS  IR+ L ERA +FNI LDDV+IT L+F KE+T
Sbjct:   143 SIVNEVLKSVVAKFNASQLITQRAQVSLLIRRDLIERAKDFNIILDDVAITELSFSKEYT 202

Query:   192 SAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFITLRKI 251
             +A+EAKQVA QEA+RA++ VEKA+QD+R  II+A+GEA +A+++GQA+  NP ++ LR+I
Sbjct:   203 AAVEAKQVAQQEAQRAQFFVEKAKQDQRQKIIQAEGEAEAAKMLGQAVTKNPGYLKLRRI 262

Query:   252 EAAREIAQTIAHSANKVFLNSDDLLLNLQE 281
              AA+ IA+T+A S NKV+L++D L+LNLQ+
Sbjct:   263 RAAQNIAKTVAASQNKVYLSADSLVLNLQD 292

GO:0016020 "membrane" evidence=IEA

FB|FBgn0010551 l(2)03709 "lethal (2) 03709" [Drosophila melanogaster (taxid:7227)]

 Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
 Identities = 146/270 (54%), Positives = 208/270 (77%)

Query:    12 PGGGAASALIKVXXXXXXXLYAAANSLYNVEGGHRAIMFNRITGVKDKVYPEGTHLMVPW 71
             PG G     +KV        Y  + SLY VEGGHRAI+F+R+ G++  +Y EG H+ +PW
Sbjct:    19 PGLGIG---LKVLAAVGAAAYGVSQSLYTVEGGHRAIIFSRLGGIQSDIYSEGLHVRIPW 75

Query:    72 FERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLP 131
             F+ P+IYD+R+RP  + S +GS+DLQM+ I LRVL+RP +  LP +++ LG +Y+E+VLP
Sbjct:    76 FQYPIIYDIRSRPRKISSPTGSKDLQMINISLRVLSRPDSLNLPYLHKQLGVDYDEKVLP 135

Query:   132 SIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFT 191
             SI +E LK+V+A++NASQLITQR+ VS  IRK L ERA +FNI LDDVS+T L+FGKE+T
Sbjct:   136 SICNEVLKSVIAKFNASQLITQRQQVSLLIRKELVERARDFNIILDDVSLTELSFGKEYT 195

Query:   192 SAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFITLRKI 251
             +AIEAKQVA QEA+RA + VE+A+Q+K+  I++A+GEA +A+++G A+  NPA++ LRK+
Sbjct:   196 AAIEAKQVAQQEAQRAVFFVERAKQEKQQKIVQAEGEAEAAKMLGLAVKQNPAYLKLRKL 255

Query:   252 EAAREIAQTIAHSANKVFLNSDDLLLNLQE 281
              AA+ IA+TIA S NKV+L++D L+LN+Q+
Sbjct:   256 RAAQSIARTIASSQNKVYLSADSLMLNIQD 285

GO:0016020 "membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

UNIPROTKB|J3KPX7 PHB2 "Prohibitin-2" [Homo sapiens (taxid:9606)]

 Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
 Identities = 149/275 (54%), Positives = 213/275 (77%)

Query:    10 KVPGG--GAASALIKVXXXXXXXLYAAANSLYNVEGGHRAIMFNRITGVK-DKVYPEGTH 66
             ++P G  G  +AL K+        Y    S++ VEGGHRAI FNRI GV+ D +  EG H
Sbjct:    11 RLPAGPRGMGTAL-KLLLGAGAVAYGVRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLH 69

Query:    67 LMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYN 126
               +PWF+ P+IYD+RARP  + S +GS+DLQMV I LRVL+RP A +LP++Y+ LG +Y 
Sbjct:    70 FRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQRLGLDYE 129

Query:   127 ERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTF 186
             ERVLPSI++E LK+VVA++NASQLITQR  VS  IR+ LTERA +F++ LDDV+IT L+F
Sbjct:   130 ERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILDDVAITELSF 189

Query:   187 GKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFI 246
              +E+T+A+EAKQVA QEA+RA+++VEKA+Q++R  I++A+GEA +A+++G+A++ NP +I
Sbjct:   190 SREYTAAVEAKQVAQQEAQRAQFLVEKAKQEQRQKIVQAEGEAEAAKMLGEALSKNPGYI 249

Query:   247 TLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQE 281
              LRKI AA+ I++TIA S N+++L +D+L+LNLQ+
Sbjct:   250 KLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQD 284

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q99623 PHB2 "Prohibitin-2" [Homo sapiens (taxid:9606)]

 Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
 Identities = 149/275 (54%), Positives = 213/275 (77%)

Query:    10 KVPGG--GAASALIKVXXXXXXXLYAAANSLYNVEGGHRAIMFNRITGVK-DKVYPEGTH 66
             ++P G  G  +AL K+        Y    S++ VEGGHRAI FNRI GV+ D +  EG H
Sbjct:    11 RLPAGPRGMGTAL-KLLLGAGAVAYGVRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLH 69

Query:    67 LMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYN 126
               +PWF+ P+IYD+RARP  + S +GS+DLQMV I LRVL+RP A +LP++Y+ LG +Y 
Sbjct:    70 FRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQRLGLDYE 129

Query:   127 ERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTF 186
             ERVLPSI++E LK+VVA++NASQLITQR  VS  IR+ LTERA +F++ LDDV+IT L+F
Sbjct:   130 ERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILDDVAITELSF 189

Query:   187 GKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFI 246
              +E+T+A+EAKQVA QEA+RA+++VEKA+Q++R  I++A+GEA +A+++G+A++ NP +I
Sbjct:   190 SREYTAAVEAKQVAQQEAQRAQFLVEKAKQEQRQKIVQAEGEAEAAKMLGEALSKNPGYI 249

Query:   247 TLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQE 281
              LRKI AA+ I++TIA S N+++L +D+L+LNLQ+
Sbjct:   250 KLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQD 284

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0033147 "negative regulation of intracellular estrogen receptor signaling pathway" evidence=IEA

GO:0033600 "negative regulation of mammary gland epithelial cell proliferation" evidence=IEA

GO:0060744 "mammary gland branching involved in thelarche" evidence=IEA

GO:0060749 "mammary gland alveolus development" evidence=IEA

GO:0060762 "regulation of branching involved in mammary gland duct morphogenesis" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0005634 "nucleus" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0030331 "estrogen receptor binding" evidence=NAS

GO:0005739 "mitochondrion" evidence=IDA

MGI|MGI:102520 Phb2 "prohibitin 2" [Mus musculus (taxid:10090)]

 Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
 Identities = 149/275 (54%), Positives = 213/275 (77%)

Query:    10 KVPGG--GAASALIKVXXXXXXXLYAAANSLYNVEGGHRAIMFNRITGVK-DKVYPEGTH 66
             ++P G  G  +AL K+        Y    S++ VEGGHRAI FNRI GV+ D +  EG H
Sbjct:    11 RLPAGPRGMGTAL-KLLLGAGAVAYGVRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLH 69

Query:    67 LMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYN 126
               +PWF+ P+IYD+RARP  + S +GS+DLQMV I LRVL+RP A +LP++Y+ LG +Y 
Sbjct:    70 FRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQRLGLDYE 129

Query:   127 ERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTF 186
             ERVLPSI++E LK+VVA++NASQLITQR  VS  IR+ LTERA +F++ LDDV+IT L+F
Sbjct:   130 ERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILDDVAITELSF 189

Query:   187 GKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFI 246
              +E+T+A+EAKQVA QEA+RA+++VEKA+Q++R  I++A+GEA +A+++G+A++ NP +I
Sbjct:   190 SREYTAAVEAKQVAQQEAQRAQFLVEKAKQEQRQKIVQAEGEAEAAKMLGEALSKNPGYI 249

Query:   247 TLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQE 281
              LRKI AA+ I++TIA S N+++L +D+L+LNLQ+
Sbjct:   250 KLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQD 284

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0033147 "negative regulation of intracellular estrogen receptor signaling pathway" evidence=IGI;IMP

GO:0033600 "negative regulation of mammary gland epithelial cell proliferation" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO;IDA

GO:0060744 "mammary gland branching involved in thelarche" evidence=IMP

GO:0060749 "mammary gland alveolus development" evidence=IMP

GO:0060762 "regulation of branching involved in mammary gland duct morphogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A9UMS3	PHB2_XENTR	No assigned EC number	0.5471	0.9446	0.9069	yes	no
Q99623	PHB2_HUMAN	No assigned EC number	0.5454	0.9377	0.9063	yes	no
Q5XIH7	PHB2_RAT	No assigned EC number	0.5454	0.9377	0.9063	yes	no
Q9SIL6	PHB6_ARATH	No assigned EC number	0.8210	0.9723	0.9825	no	no
O35129	PHB2_MOUSE	No assigned EC number	0.5454	0.9377	0.9063	yes	no
P50085	PHB2_YEAST	No assigned EC number	0.5761	0.8408	0.7838	yes	no
O49460	PHB1_ARATH	No assigned EC number	0.8763	0.9792	0.9826	no	no
Q9ZNT7	PHB2_ARATH	No assigned EC number	0.8298	0.9896	1.0	yes	no
Q9FFH5	PHB7_ARATH	No assigned EC number	0.7697	0.9619	1.0	no	no
Q2HJ97	PHB2_BOVIN	No assigned EC number	0.5454	0.9377	0.9063	yes	no
Q5RB19	PHB2_PONAB	No assigned EC number	0.5418	0.9377	0.9063	yes	no
O94550	PHB2_SCHPO	No assigned EC number	0.5789	0.8546	0.8576	yes	no
Q5ZMN3	PHB2_CHICK	No assigned EC number	0.5737	0.8650	0.8305	yes	no
P50093	PHB2_CAEEL	No assigned EC number	0.5679	0.8408	0.8265	yes	no
Q54Q31	PHB2_DICDI	No assigned EC number	0.5791	0.9480	0.9351	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	289
cd03401	196	cd03401, Band_7_prohibitin, Band_7_prohibitin	1e-116
smart00244	160	smart00244, PHB, prohibitin homologues	9e-34
COG0330	291	COG0330, HflC, Membrane protease subunits, stomati	2e-23
pfam01145	177	pfam01145, Band_7, SPFH domain / Band 7 family	2e-23
cd02106	121	cd02106, Band_7, The band 7 domain of flotillin (r	1e-18
cd03405	242	cd03405, Band_7_HflC, Band_7_HflC: The band 7 doma	2e-11
cd03403	215	cd03403, Band_7_stomatin_like, Band_7_stomatin_lik	4e-10
cd03400	124	cd03400, Band_7_1, A subgroup of the band 7 domain	1e-07
cd03407	262	cd03407, Band_7_4, A subgroup of the band 7 domain	5e-06

>gnl|CDD|239495 cd03401, Band_7_prohibitin, Band_7_prohibitin

 Score =  333 bits (855), Expect = e-116
 Identities = 135/196 (68%), Positives = 165/196 (84%)

Query: 37  SLYNVEGGHRAIMFNRITGVKDKVYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDL 96
           SLYNV+GGHRA++FNR  GVKD VY EG H  +PWF++P+I+DVRARP  +EST+GS+DL
Sbjct: 1   SLYNVDGGHRAVLFNRGGGVKDLVYGEGLHFRIPWFQKPIIFDVRARPRNIESTTGSKDL 60

Query: 97  QMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRET 156
           QMV I LRVL RP A +LP +Y+ LGE+Y+ERVLPSII+E LKAVVAQ+ A +LITQRE 
Sbjct: 61  QMVNITLRVLFRPDASQLPRIYQNLGEDYDERVLPSIINEVLKAVVAQFTAEELITQREE 120

Query: 157 VSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQ 216
           VS  IR+ LTERA +F I LDDVSIT LTF KEFT A+EAKQVA QEAERAK++VEKAEQ
Sbjct: 121 VSALIREALTERAKDFGIILDDVSITHLTFSKEFTKAVEAKQVAQQEAERAKFVVEKAEQ 180

Query: 217 DKRSAIIRAQGEATSA 232
           +K++A+IRA+GEA +A
Sbjct: 181 EKQAAVIRAEGEAEAA 196

A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology. Length = 196

>gnl|CDD|214581 smart00244, PHB, prohibitin homologues

 Score =  120 bits (303), Expect = 9e-34
 Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 6/164 (3%)

Query: 37  SLYNVEGGHRAIMFNRITGVKDKVYPEGTHLMVPWFERPVIYDVRARPHLV-ESTSGSRD 95
           +   V G     +  R+  V   + P G H ++P+ +     D+RA+   V    + ++D
Sbjct: 1   AAIKVVGEGERGVVERLGRVLRVLGP-GLHFLIPFIDDVKKVDLRAQTDDVPPQETITKD 59

Query: 96  LQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLIT-QR 154
              V +   V  R V D L  VYR    + +  V+  +   TL++V+ +    +L+T QR
Sbjct: 60  NVKVSVDAVVYYR-VLDPLRAVYRV--LDADYAVIEQLAQTTLRSVIGKRTLDELLTDQR 116

Query: 155 ETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQ 198
           E +S  IR+ L E A  + I ++DV I  +   +E   A+EA+Q
Sbjct: 117 EKISENIREELNEAAEAWGIKVEDVEIKDIRLPEEIKEAMEAQQ 160

prohibitin homologues. Length = 160

>gnl|CDD|223407 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]

 Score = 96.7 bits (241), Expect = 2e-23
 Identities = 68/294 (23%), Positives = 125/294 (42%), Gaps = 44/294 (14%)

Query: 20  LIKVGIIGGIGLYAAANSLYNVEGGHRAIMFNRITGVKDKVYPEGTHLMVPWFERPVIYD 79
           LI + ++  I L  ++  +         + F R T    +    G H  +P+ E      
Sbjct: 5   LIIILLVILIVLLFSSIFVVKEGERGVVLRFGRYTRTLGE---PGLHFKIPFPEAIEEVV 61

Query: 80  VR--ARPHLVESTS----GSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSI 133
           VR   R   ++        ++D  +V +   V  R V D    VY        E  L  +
Sbjct: 62  VRVDLRERTLDVGPPQEVITKDNVIVSVDAVVQYR-VTDPQKAVYNVENA---EAALRQL 117

Query: 134 IHETLKAVVAQYNASQLITQRET-VSREIRKILTERAANFNIALDDVSITSLTFGKEFTS 192
           +   L++V+ +    +L+T+R   ++ +IR+IL E A  + I + DV I  +   +E  +
Sbjct: 118 VQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKVVDVEIKDIDPPEEVQA 177

Query: 193 AIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIA------------ 240
           A+E KQ+AA+  +RA+  + +AE + ++AI+RA+GEA +A ++ +A A            
Sbjct: 178 AME-KQMAAERDKRAE--ILEAEGEAQAAILRAEGEAEAAIILAEAEAEAEVIARAEADA 234

Query: 241 ------------NNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEM 282
                         P  +  R +E   EIA       +KV +  +     +  +
Sbjct: 235 AKIIAAALREAPAAPQALAQRYLEELLEIALA---GNSKVVVVPNSAGGAILGL 285

Length = 291

>gnl|CDD|216327 pfam01145, Band_7, SPFH domain / Band 7 family

 Score = 93.6 bits (233), Expect = 2e-23
 Identities = 50/182 (27%), Positives = 87/182 (47%), Gaps = 7/182 (3%)

Query: 39  YNVEGGHRAIMFNRITGVKDKVYPEGTHLMVPWFERPVIYDVRARPHLVE--STSGSRDL 96
             V  G   ++     G   +V   G H  +P+ +   + D R +   V    T  ++D 
Sbjct: 1   TIVPPGEVGVVTR--FGKVSRVLGPGLHFKLPFIQTITVVDTRLQTLEVTVDITVLTKDG 58

Query: 97  QMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRET 156
             V + + V  R V D    V    GE   + +L  ++   L+ V+A+Y   +L++ RE 
Sbjct: 59  VPVNVDVTVQYR-VEDPAKLVANYTGEEDLQELLRPLVRSALREVIARYTLDELLSNREE 117

Query: 157 VSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQ 216
           +++E+++ L E    + + ++DV IT +    E   AIE KQ A QEAE A+  +E+AE 
Sbjct: 118 IAQEVKEALQEELEKYGLEIEDVQITDIDPPPEIAEAIEEKQAAEQEAEEAE--IERAEA 175

Query: 217 DK 218
           + 
Sbjct: 176 EA 177

This family has been called SPFH, Band 7 or PHB domain. Recent phylogenetic analysis has shown this domain to be a slipin or Stomatin-like integral membrane domain conserved from protozoa to mammals. Length = 177

>gnl|CDD|239024 cd02106, Band_7, The band 7 domain of flotillin (reggie) like proteins

 Score = 79.3 bits (196), Expect = 1e-18
 Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 2/123 (1%)

Query: 76  VIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIH 135
            I   R    +      ++D   V++   V  R V D +  +Y        E  L  +  
Sbjct: 1   RIDLRRQTLDVPPQEVLTKDNVPVRVDAVVQYR-VVDPVKALYNVRDPED-EEALRQLAQ 58

Query: 136 ETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIE 195
             L++V+ +    +L+  R+ ++ E+R+ L E    + I + DV I  +   +E   A+E
Sbjct: 59  SALRSVIGKMTLDELLEDRDEIAAEVREALQEDLDKYGIEVVDVRIKDIDPPEEVQEAME 118

Query: 196 AKQ 198
            +Q
Sbjct: 119 DRQ 121

This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. Length = 121

>gnl|CDD|239499 cd03405, Band_7_HflC, Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins

 Score = 62.2 bits (152), Expect = 2e-11
 Identities = 57/258 (22%), Positives = 105/258 (40%), Gaps = 55/258 (21%)

Query: 38  LYNVEGGHRAIMFNRITGVKDKVYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQ 97
           L+ V+ G +A++  R   V   V   G H  +P+ ++   +D R     + +        
Sbjct: 1   LFIVDEGEQAVVL-RFGEVVRVVTEPGLHFKLPFIQQVKKFDKR-----ILTLDSDPQ-- 52

Query: 98  MVKIGLRVLTRPVADKLPTV---------------YRALG--ENYNERVLPSIIHETLKA 140
                 RVLT+   DK   +               Y+A+G  E   E  L  I++  L+A
Sbjct: 53  ------RVLTK---DKKRLIVDAYAKWRITDPLRFYQAVGGEERAAETRLDQIVNSALRA 103

Query: 141 VVAQYNASQLI-TQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAI----- 194
              +    +L+  +R  +  EIR+ + E A    I + DV I  +   +E + ++     
Sbjct: 104 EFGKRTLIELVSGERGELMEEIRRAVAEEAKELGIEVVDVRIKRIDLPEEVSESVYRRMR 163

Query: 195 -----EAKQVAAQEAERAKYIVEKAEQD---------KRSAIIRAQGEATSAQLIGQAIA 240
                 A +  A+  E A+ I   A+++         + +  IR +G+A +A++  +A  
Sbjct: 164 AERERIAAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIRGEGDAEAARIYAEAYG 223

Query: 241 NNPAFITL-RKIEAAREI 257
            +P F    R +EA R  
Sbjct: 224 KDPEFYAFYRSLEAYRNS 241

This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Length = 242

>gnl|CDD|239497 cd03403, Band_7_stomatin_like, Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins)

 Score = 58.3 bits (142), Expect = 4e-10
 Identities = 41/131 (31%), Positives = 71/131 (54%), Gaps = 17/131 (12%)

Query: 137 TLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEA 196
           TL++V+ +    +L+++RE ++ E+ +IL E    + + ++ V I  +   +E   A+  
Sbjct: 93  TLRSVIGKMELDELLSEREEINAELVEILDEATDPWGVKVERVEIKDIILPQEIQEAMA- 151

Query: 197 KQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQA---IANNPAFITLRKIEA 253
           KQ    EAER          +KR+ II A+GE  +A L+ +A    A NPA + LR++E 
Sbjct: 152 KQA---EAER----------EKRAKIIEAEGERQAAILLAEAAKQAAINPAALQLRELET 198

Query: 254 AREIAQTIAHS 264
             EIA+  A +
Sbjct: 199 LEEIAKEAAST 209

Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin localizes to the plasma membrane of podocyte foot processes and, is found in higher order oligomers. Podocin plays a role in regulating glomerular permeability. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. This group also contains proteins similar to three Caenorhabditis elegans proteins: UNC-1, UNC-24 and, MEC-2. Mutations in the unc-1 and unc-24 genes result in abnormal motion and altered patterns of sensitivity to volatile anesthetics. MEC-2 and UNC-24 proteins interact with MEC-4 which is part of the degenerin channel complex required for response to gentle body touch. Length = 215

>gnl|CDD|239494 cd03400, Band_7_1, A subgroup of the band 7 domain of flotillin (reggie) like proteins

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 1/101 (0%)

Query: 99  VKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLI-TQRETV 157
           +   + V  R   +K   V+  LG +Y  +++       ++ V  +Y A Q+  T+R+ +
Sbjct: 24  INADVSVQYRINPNKAAAVHSKLGTDYARKIVRPTFRSLVREVTGRYTAEQIYSTKRKEI 83

Query: 158 SREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQ 198
              I+K L E      + L++V + ++    +   AIEAK 
Sbjct: 84  ESAIKKELIEEFVGDGLILEEVLLRNIKLPDQIADAIEAKL 124

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. Length = 124

>gnl|CDD|239501 cd03407, Band_7_4, A subgroup of the band 7 domain of flotillin (reggie) like proteins

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 27/128 (21%), Positives = 52/128 (40%), Gaps = 14/128 (10%)

Query: 137 TLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEA 196
            L+A + +    +L  Q++ +++ + + L E  + +   +    IT +    E   A+  
Sbjct: 92  VLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNE 151

Query: 197 KQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFITLRKIEAARE 256
              A ++   A   V KAE +K   I  A+ +A + +L G   A           E  + 
Sbjct: 152 INAAQRQRVAA---VHKAEAEKIKDIKAAEADAEAKRLQGVGAA-----------EQRQA 197

Query: 257 IAQTIAHS 264
           IA  +  S
Sbjct: 198 IADGLRES 205

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. Length = 262

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	289
KOG3090	290	consensus Prohibitin-like protein [Posttranslation	100.0
PRK11029	334	FtsH protease regulator HflC; Provisional	100.0
TIGR01932	317	hflC HflC protein. HflK and HflC are paralogs enco	100.0
PRK10930	419	FtsH protease regulator HflK; Provisional	100.0
cd03401	196	Band_7_prohibitin Band_7_prohibitin. A subgroup of	100.0
cd03405	242	Band_7_HflC Band_7_HflC: The band 7 domain of flot	100.0
TIGR01933	261	hflK HflK protein. HflK and HflC are paralogs enco	100.0
KOG3083	271	consensus Prohibitin [Posttranslational modificati	100.0
cd03404	266	Band_7_HflK Band_7_HflK: The band 7 domain of flot	100.0
cd03407	262	Band_7_4 A subgroup of the band 7 domain of flotil	100.0
cd03403	215	Band_7_stomatin_like Band_7_stomatin_like: A subgr	100.0
cd03406	280	Band_7_3 A subgroup of the band 7 domain of flotil	100.0
COG0330	291	HflC Membrane protease subunits, stomatin/prohibit	100.0
KOG2621	288	consensus Prohibitins and stomatins of the PID sup	100.0
cd03402	219	Band_7_2 A subgroup of the band 7 domain of flotil	99.97
PF01145	179	Band_7: SPFH domain / Band 7 family; InterPro: IPR	99.96
smart00244	160	PHB prohibitin homologues. prohibitin homologues	99.96
KOG2620	301	consensus Prohibitins and stomatins of the PID sup	99.95
KOG2962	322	consensus Prohibitin-related membrane protease sub	99.92
cd03400	124	Band_7_1 A subgroup of the band 7 domain of flotil	99.85
cd03408	207	Band_7_5 A subgroup of the band 7 domain of flotil	99.83
COG2268	548	Uncharacterized protein conserved in bacteria [Fun	99.81
KOG2668	428	consensus Flotillins [Intracellular trafficking, s	99.71
cd03399	128	Band_7_flotillin Band_7_flotillin: a subgroup of t	99.71
cd02106	121	Band_7 The band 7 domain of flotillin (reggie) lik	99.55
PF13421	211	Band_7_1: SPFH domain-Band 7 family	99.41
COG4260	345	Membrane protease subunit, stomatin/prohibitin fam	98.86
PTZ00491	850	major vault protein; Provisional	98.25
PF12127	316	YdfA_immunity: SigmaW regulon antibacterial; Inter	97.74
PRK13665	316	hypothetical protein; Provisional	97.44
COG1580	159	FliL Flagellar basal body-associated protein [Cell	97.13
PRK12785	166	fliL flagellar basal body-associated protein FliL;	95.49
COG4864	328	Uncharacterized protein conserved in bacteria [Fun	93.57
PRK06654	181	fliL flagellar basal body-associated protein FliL;	93.55
cd03404	266	Band_7_HflK Band_7_HflK: The band 7 domain of flot	93.36
cd03405	242	Band_7_HflC Band_7_HflC: The band 7 domain of flot	93.34
PF11978	118	MVP_shoulder: Shoulder domain; InterPro: IPR021870	92.16
PRK07021	162	fliL flagellar basal body-associated protein FliL;	91.85
PRK11029	334	FtsH protease regulator HflC; Provisional	91.66
TIGR01932	317	hflC HflC protein. HflK and HflC are paralogs enco	91.28
PF03748	99	FliL: Flagellar basal body-associated protein FliL	87.96
PRK08455	182	fliL flagellar basal body-associated protein FliL;	87.08
cd03407	262	Band_7_4 A subgroup of the band 7 domain of flotil	85.99
TIGR01933	261	hflK HflK protein. HflK and HflC are paralogs enco	85.82
PRK07718	142	fliL flagellar basal body-associated protein FliL;	83.86
PRK05697	137	flagellar basal body-associated protein FliL-like	81.73
PLN03086	567	PRLI-interacting factor K; Provisional	81.59

>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.2e-50  Score=329.59  Aligned_cols=286  Identities=76%  Similarity=1.120  Sum_probs=276.7

Q ss_pred             CCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhhcccEEEecCCeEEEEEccccCccceeeCCcceEEccccCccEEEee
Q 022958            1 MNFNNVKVPKVPGGGAASALIKVGIIGGIGLYAAANSLYNVEGGHRAIMFNRITGVKDKVYPEGTHLMVPWFERPVIYDV   80 (289)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~g~~gVv~~r~gg~~~~~~~pG~~~~~P~~~~v~~~~~   80 (289)
                      |++++-+.|.++|..+++..+.+++++.+++.....++|.|+.||++++++|+||....++..|.||.+||+++.+.||+
T Consensus         1 ~~~~~~~~~~~pg~~~~~~~l~~~~~~G~~~y~v~~sl~nVdgGHRAI~fnRi~Gik~~iy~EGtHf~iPwfe~pIiYDv   80 (290)
T KOG3090|consen    1 MLMKLGKVPNIPGPRGAGAGLKLLLIGGLGAYGVTQSLYNVDGGHRAIVFNRIGGIKDDIYPEGTHFRIPWFERPIIYDV   80 (290)
T ss_pred             CchhccCCCCCCCcchHHHHHHHHHHhchhhheecceeEeecCCceEEEEeccccchhccccCCceEeeeccccceeeee
Confidence            77888899999999887777777788888889999999999999999999999999999999999999999999999999


Q ss_pred             eeeeeeeeecccccCCcEEEEEEEEEeecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcChhHHhhhHHHHHHH
Q 022958           81 RARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSRE  160 (289)
Q Consensus        81 ~~~~~~~~~~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~  160 (289)
                      +.+++.+.+...|+|-+.|++...|--|++.+.++.+|+++|.+|.++.+-+++.+.|+.++++|+..+++++|+..+..
T Consensus        81 RarP~~i~S~tGskDLQmVnI~lRVLsRP~~~~Lp~iyrtLG~~y~ERVLPSIinEvLKaVVAqfNASqLITQRe~VSrl  160 (290)
T KOG3090|consen   81 RARPRLISSPTGSKDLQMVNIGLRVLSRPMADQLPEIYRTLGQNYDERVLPSIINEVLKAVVAQFNASQLITQREQVSRL  160 (290)
T ss_pred             ccCcccccCCCCCcceeEEEeeeEEecCCChhhhHHHHHHhccCcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCeEEEEEEeeccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Q 022958          161 IRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIA  240 (289)
Q Consensus       161 v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie~~~~a~q~~~~a~~~i~~A~aea~~~~~~A~aeaea~~~~~~a~~  240 (289)
                      +++.|.++..++.|-+.+|.|+++.|.+++..++|+||+|+|+++||.+.+++|+++++..+++|+|||++++++++|++
T Consensus       161 iRk~L~eRA~~Fni~LDDVSiT~l~F~~efTaAiEaKQvA~QeAqRA~F~VekA~qek~~~ivrAqGEaksAqliGeAi~  240 (290)
T KOG3090|consen  161 IRKILTERAADFNIALDDVSITELTFGKEFTAAIEAKQVAAQEAQRAKFIVEKAEQEKQSAIVRAQGEAKSAQLIGEAIK  240 (290)
T ss_pred             HHHHHHHHHhccceEeecceeeeeecCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhccchHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cChhhHHHHHHHHHHHHHHHhcCCCCEEEEcCCCccccccchhhhc
Q 022958          241 NNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEMKLEG  286 (289)
Q Consensus       241 ~~p~~~~~~~~e~~~~i~~~~~~~~~~i~l~~~~~~~~~~~~~~~~  286 (289)
                      ++|.++.+|++++-++|++.+++++|++||++++.++|+..++++.
T Consensus       241 nn~~fi~Lrki~aAr~IA~tia~S~NkvyL~~~~LlLn~q~~~~~~  286 (290)
T KOG3090|consen  241 NNPAFITLRKIEAAREIAQTIASSANKVYLSSDDLLLNLQDMDLDD  286 (290)
T ss_pred             CCccceeehhHHHHHHHHHHHhcCCCeEEecccceeeeehhhcccc
Confidence            9999999999999999999999999999999999999999999874

>PRK11029 FtsH protease regulator HflC; Provisional

Probab=100.00  E-value=5.9e-44  Score=319.08  Aligned_cols=253  Identities=22%  Similarity=0.341  Sum_probs=215.4

Q ss_pred             HHHHHHHHhhcccEEEecCCeEEEEEccccCccce------eeCCcceEEccccCccEEEeeeeeeeeeee-cccccCCc
Q 022958           25 IIGGIGLYAAANSLYNVEGGHRAIMFNRITGVKDK------VYPEGTHLMVPWFERPVIYDVRARPHLVES-TSGSRDLQ   97 (289)
Q Consensus        25 v~~~~~~~~~~~~~~~V~~g~~gVv~~r~gg~~~~------~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~-~~~T~D~~   97 (289)
                      ++++++++++++|+++|++||+||++ |||+..+.      +++||+||++||++++..+|++.+.++.+. .+.|+|+.
T Consensus         7 ~~~~~~~~~l~~s~~iV~ege~gVV~-rFGk~~~~~~~~~~~l~PGLhf~iPfid~V~~vdvR~q~~d~~~~~vlT~D~~   85 (334)
T PRK11029          7 AIIIIVLVVLYMSVFVVKEGERGIVL-RFGKVLRDDDNKPLVYAPGLHFKIPFIETVKMLDARIQTMDNQADRFVTKEKK   85 (334)
T ss_pred             HHHHHHHHHHHheEEEECCCeEEEEE-ECCceeccccccccccCCceEEEcCCceEEEEEeeEEEEeeCCCceEEcCCCC
Confidence            34445566778899999999999998 89886543      589999999999999999999999999885 58999999


Q ss_pred             EEEEEEEEEeecCCCCHHHHHHHhCc---cccccccchHHHHHHHHHHhhcChhHHhh-hHHHHHHHHHHHHHHH-----
Q 022958           98 MVKIGLRVLTRPVADKLPTVYRALGE---NYNERVLPSIIHETLKAVVAQYNASQLIT-QRETVSREIRKILTER-----  168 (289)
Q Consensus        98 ~v~v~~~v~y~i~~~~~~~~~~~~g~---~~~~~~l~~~~~~~lr~~~~~~~~~ei~~-~R~~i~~~v~~~l~~~-----  168 (289)
                      .|.+|++++|+|  .|+..++.+++.   ......|.+.+++++|+++|+++++|+++ +|+++..++++.+++.     
T Consensus        86 ~V~VD~~V~yrI--~Dp~~~~~~~~~~n~~~a~~~l~~~v~salR~viG~~tldei~~~~R~~i~~~v~~~l~~~~~~~~  163 (334)
T PRK11029         86 DLIVDSYIKWRI--SDFSRYYLATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLDVRDALNSGSAGTE  163 (334)
T ss_pred             EEEEEEEEEEEE--CCHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHcccCHHHHHHhhHHHHHHHHHHHHHHhhhccc
Confidence            999999999995  778887776542   23446788999999999999999999997 7999999999999854     


Q ss_pred             ----------------------------------hhcCCeEEEEEEeeccccCHHHHHHHHHHHHHHHHHHH----H---
Q 022958          169 ----------------------------------AANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAER----A---  207 (289)
Q Consensus       169 ----------------------------------l~~~Gi~v~~v~I~~i~~p~~~~~aie~~~~a~q~~~~----a---  207 (289)
                                                        +.+|||+|.+|.|++++||+++.++|++++.++++...    +   
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~~a~~~~aege  243 (334)
T PRK11029        164 DEVATPAADDAIASAAERVEAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTEVSDAIYNRMRAEREAVARRHRSQGQ  243 (334)
T ss_pred             ccccccccccccccchhhcccccccccccccccccccCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                              46899999999999999999999999888887776541    1   


Q ss_pred             ------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcChhhHHH-HHHHHHHHHHHHhcCCCCEEEEcCCC
Q 022958          208 ------------KYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFITL-RKIEAAREIAQTIAHSANKVFLNSDD  274 (289)
Q Consensus       208 ------------~~~i~~A~aea~~~~~~A~aeaea~~~~~~a~~~~p~~~~~-~~~e~~~~i~~~~~~~~~~i~l~~~~  274 (289)
                                  +.....|++++++++++|+|||+|+++++++|.++|+++.+ +++|+++++.   .+++++++||+++
T Consensus       244 ~~a~~~~a~A~~e~~~~~AeA~~~a~i~~aegeA~a~~~~~~a~~~~p~~~~~~~~lea~~~~~---~~~~~~~vl~~~~  320 (334)
T PRK11029        244 EEAEKLRATADYEVTRTLAEAERQGRIMRGEGDAEAAKLFADAFSQDPDFYAFIRSLRAYENSF---SGNQDVMVLSPDS  320 (334)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh---cCCCcEEEECCCh
Confidence                        11334588888999999999999999999999999999986 9999999954   3556789999999


Q ss_pred             ccccccchh
Q 022958          275 LLLNLQEMK  283 (289)
Q Consensus       275 ~~~~~~~~~  283 (289)
                      .+|++...+
T Consensus       321 ~~~~~l~~~  329 (334)
T PRK11029        321 DFFRYMKTP  329 (334)
T ss_pred             HHHHHhhcc
Confidence            999887533

>TIGR01932 hflC HflC protein

Probab=100.00  E-value=1.1e-43  Score=318.18  Aligned_cols=251  Identities=18%  Similarity=0.323  Sum_probs=212.0

Q ss_pred             HHHHHHHHHhhcccEEEecCCeEEEEEccccCccce------eeCCcceEEccccCccEEEeeeeeeeeeee-cccccCC
Q 022958           24 GIIGGIGLYAAANSLYNVEGGHRAIMFNRITGVKDK------VYPEGTHLMVPWFERPVIYDVRARPHLVES-TSGSRDL   96 (289)
Q Consensus        24 ~v~~~~~~~~~~~~~~~V~~g~~gVv~~r~gg~~~~------~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~-~~~T~D~   96 (289)
                      +++++++++++++|+++|++||+||++ +||+..+.      +++||+||++||++++..+|++.+.++.+. .+.|+|+
T Consensus         6 ~~~~~~~~~~l~~~~~iV~~ge~gVv~-~fGk~~~~~~~~~~v~~pGlhf~~P~i~~v~~vd~r~q~~~~~~~~vlTkD~   84 (317)
T TIGR01932         6 IVVIVLLIVVLFQPFFIIKEGERGIIT-RFGKILKDNNHHVLVYEPGLHFKIPFIEHVKIFDAKIQTMDGRPDRIPTKEK   84 (317)
T ss_pred             HHHHHHHHHHHHheEEEECCCeEEEEE-ecCceeccccccccccCCCeEEEeccccEEEEeeeeEEEecCCcceeECCCC
Confidence            334444566778899999999999997 89876543      458999999999999999999999998865 5899999


Q ss_pred             cEEEEEEEEEeecCCCCHHHHHHHhC---ccccccccchHHHHHHHHHHhhcChhHHhh-hHHHH---------------
Q 022958           97 QMVKIGLRVLTRPVADKLPTVYRALG---ENYNERVLPSIIHETLKAVVAQYNASQLIT-QRETV---------------  157 (289)
Q Consensus        97 ~~v~v~~~v~y~i~~~~~~~~~~~~g---~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~-~R~~i---------------  157 (289)
                      +++.++++++|||  +++..+|.++|   .++.+..|.+.+++++|+++|+++++|+++ +|+++               
T Consensus        85 ~~V~Vd~~V~yrV--~d~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~vig~~tl~eil~~~r~~i~~~~~~~~~~~~~~~  162 (317)
T TIGR01932        85 KDIIIDTYIRWRI--EDFKKYYLSTGGGTISAAEVLIKRKIDDRLRSEIGVLGLKEIVRSSNDQLDTLVSKLALNRGGKI  162 (317)
T ss_pred             CEEEEEEEEEEEE--CCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHccCcHHHHHhcchHHhhhhhchhhccccccc
Confidence            9999999999995  68888888877   335677899999999999999999999996 45555               


Q ss_pred             --------------HHHHHHHHHHHhhcCCeEEEEEEeeccccCHHHHHHHHHHHHHHHHHHH-----------------
Q 022958          158 --------------SREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAER-----------------  206 (289)
Q Consensus       158 --------------~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie~~~~a~q~~~~-----------------  206 (289)
                                    ...+.+.+...+.+||++|.+|.|++++||+++.++++++..++++...                 
T Consensus       163 ~~~~~~~~~~r~~l~~~i~~~~~~~~~~~Gi~V~~V~I~~i~~p~~v~~Ai~~~~~aere~~a~~~r~ege~~a~~i~a~  242 (317)
T TIGR01932       163 NKIAMTITKGREILAREISQIANSQLKDIGIEVVDVRIKKINYSDELSESIYNRMRSEREQIARMHRSQGEEKAEEILGK  242 (317)
T ss_pred             cccccccchhhhhHHHHHHHHHHHHHhcCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          5677888888999999999999999999999999999877777654311                 


Q ss_pred             --HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcChhhHHH-HHHHHHHHHHHHhcCCCCEEEEcCCCcccccc
Q 022958          207 --AKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFITL-RKIEAAREIAQTIAHSANKVFLNSDDLLLNLQ  280 (289)
Q Consensus       207 --a~~~i~~A~aea~~~~~~A~aeaea~~~~~~a~~~~p~~~~~-~~~e~~~~i~~~~~~~~~~i~l~~~~~~~~~~  280 (289)
                        ++.....|+|++++.+++|+|||+++++++++|.++|+++++ +++|+++++.   .++++++++++++++|++.
T Consensus       243 A~~e~~~~~aeA~a~a~~~~Aegea~a~~~~~~a~~~~p~~~~~~~~le~~~~~~---~~~~~~~vl~~~~~~~~~~  316 (317)
T TIGR01932       243 AEYEVRKILSEAYRTARIIKGEGDAEAAKIYSDAYGKDPEFYSFWRSLEAYEKSF---KDNQDEKVLSTDSEFFQYM  316 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh---CCCCCEEEECCCcHHHHhh
Confidence              112345677788899999999999999999999999999985 9999999954   3666789999999999875

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)

>PRK10930 FtsH protease regulator HflK; Provisional

Probab=100.00  E-value=2.8e-40  Score=303.02  Aligned_cols=240  Identities=18%  Similarity=0.259  Sum_probs=200.6

Q ss_pred             HHHHHHHHHhhcccEEEecCCeEEEEEccccCccceeeCCcceEEccccCccEEEeeeeeeeee-eecccccCCcEEEEE
Q 022958           24 GIIGGIGLYAAANSLYNVEGGHRAIMFNRITGVKDKVYPEGTHLMVPWFERPVIYDVRARPHLV-ESTSGSRDLQMVKIG  102 (289)
Q Consensus        24 ~v~~~~~~~~~~~~~~~V~~g~~gVv~~r~gg~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~-~~~~~T~D~~~v~v~  102 (289)
                      +++++++++|+++|+++|+++|+||++ |||+. ..+++||+||++||+++|..+|++.+.... +..+.|+|++.|+|+
T Consensus        83 ii~~~~v~i~l~sg~yiV~e~E~gVV~-rFGk~-~~~l~PGLhfk~PfId~V~~vdv~~~~~~~~~~~mLT~D~n~V~Vd  160 (419)
T PRK10930         83 IAAAAVVIIWAASGFYTIKEAERGVVT-RFGKF-SHLVEPGLNWKPTFIDEVKPVNVEAVRELAASGVMLTSDENVVRVE  160 (419)
T ss_pred             HHHHHHHHHHHHheEEEECCCeEEEEE-ECCcC-cceeCCceEEecCceEEEEEEEeEEEEEccCcceeECCCCCEEEEE
Confidence            445556667888999999999999998 99665 579999999999999999999997754332 235899999999999


Q ss_pred             EEEEeecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcChhHHhh-hHHHHHHHHHHHHHHHhhcC--CeEEEEE
Q 022958          103 LRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLIT-QRETVSREIRKILTERAANF--NIALDDV  179 (289)
Q Consensus       103 ~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~-~R~~i~~~v~~~l~~~l~~~--Gi~v~~v  179 (289)
                      ++|+|||  .|+..++.  +..+.+..|.+.+++++|+++++++++++++ +|++|..++.+.|++.++.|  ||+|.+|
T Consensus       161 ~~VqYrI--~Dp~~~lf--~v~~~~~~L~~~~~SAlR~vIG~~tldevLt~~R~~I~~~i~~~l~e~l~~y~~GI~V~~V  236 (419)
T PRK10930        161 MNVQYRV--TDPEKYLF--SVTSPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRPYDMGITLLDV  236 (419)
T ss_pred             EEEEEEE--CCHHHHHH--hccCHHHHHHHHHHHHHHHHHccCCHHHHhhccHHHHHHHHHHHHHHHHhhcCCCeEEEEE
Confidence            9999995  67776664  3456778899999999999999999999997 69999999999999999986  9999999


Q ss_pred             EeeccccCHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Q 022958          180 SITSLTFGKEFTSAIEAKQVAAQEAER-------------------AKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIA  240 (289)
Q Consensus       180 ~I~~i~~p~~~~~aie~~~~a~q~~~~-------------------a~~~i~~A~aea~~~~~~A~aeaea~~~~~~a~~  240 (289)
                      .|++++||+++++|+++...|+++.++                   ++..+..|++++++.+++|+|||+++..+.++|.
T Consensus       237 ~I~di~pP~eV~~Af~~v~~Are~~~~~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~rF~~i~~~Y~  316 (419)
T PRK10930        237 NFQAARPPEEVKAAFDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVARFAKLLPEYK  316 (419)
T ss_pred             EEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence            999999999999999876666654322                   1224667899999999999999988665556999


Q ss_pred             cChhhHHH-HHHHHHHHHHHHhcCCCCEEEEcCC
Q 022958          241 NNPAFITL-RKIEAAREIAQTIAHSANKVFLNSD  273 (289)
Q Consensus       241 ~~p~~~~~-~~~e~~~~i~~~~~~~~~~i~l~~~  273 (289)
                      ++|++.+. .|||+++++-    ++.++++++.+
T Consensus       317 kaP~vtr~RlYletme~vl----~~~~kvivd~~  346 (419)
T PRK10930        317 AAPEITRERLYIETMEKVL----GHTRKVLVNDK  346 (419)
T ss_pred             hCHHHHHHHHHHHHHHHHH----ccCCEEEEeCC
Confidence            99999985 9999999954    34566777765

>cd03401 Band_7_prohibitin Band_7_prohibitin

Probab=100.00  E-value=1.5e-40  Score=279.74  Aligned_cols=194  Identities=66%  Similarity=1.015  Sum_probs=184.2

Q ss_pred             cEEEecCCeEEEEEccccCccc-eeeCCcceEEccccCccEEEeeeeeeeeeeecccccCCcEEEEEEEEEeecCCCCHH
Q 022958           37 SLYNVEGGHRAIMFNRITGVKD-KVYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLP  115 (289)
Q Consensus        37 ~~~~V~~g~~gVv~~r~gg~~~-~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~~~~T~D~~~v~v~~~v~y~i~~~~~~  115 (289)
                      |+++|++|++||++ +|||... .+++||+||++||+++++.+|++.+.+++.....|+|++.|++++++.|++.++++.
T Consensus         1 ~~~~V~~g~~gVv~-~~g~~~~~~~~~pG~h~~~P~~~~v~~~~~r~~~~~~~~~~~t~d~~~V~v~~~v~y~v~~~~~~   79 (196)
T cd03401           1 SLYNVDGGHRAVLF-NRGGGVKDLVYGEGLHFRIPWFQKPIIFDVRARPRNIESTTGSKDLQMVNITLRVLFRPDASQLP   79 (196)
T ss_pred             CEEEECCCcEEEEE-EecCccccCccCCceEEEccccceeEEEEeeeeEEEEeecccCCCCeEEEEEEEEEEEeCHHHHH
Confidence            68999999999998 7877544 499999999999999999999999999888888999999999999999999888888


Q ss_pred             HHHHHhCccccccccchHHHHHHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHhhcCCeEEEEEEeeccccCHHHHHHHH
Q 022958          116 TVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIE  195 (289)
Q Consensus       116 ~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie  195 (289)
                      .+|..+|.++.+..|.+.+++.+|+++++|+++|++++|++|+..+.+.+++.+.+|||+|.++.|++|+||+++.++|+
T Consensus        80 ~~~~~~~~~~~~~~i~~~v~~~lR~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~  159 (196)
T cd03401          80 RIYQNLGEDYDERVLPSIINEVLKAVVAQFTAEELITQREEVSALIREALTERAKDFGIILDDVSITHLTFSKEFTKAVE  159 (196)
T ss_pred             HHHHHhCcchHhhhhcHHHHHHHHHHHccCCHHHHHhhHHHHHHHHHHHHHHHHHhCCeEEEEEEEEeccCCHHHHHHHH
Confidence            99999987777888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 022958          196 AKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATS  231 (289)
Q Consensus       196 ~~~~a~q~~~~a~~~i~~A~aea~~~~~~A~aeaea  231 (289)
                      +++.|+|++++++.++.+|++++++++++|+|||+|
T Consensus       160 ~k~~a~q~~~~a~~~~~~a~~ea~~~~~~A~gea~a  195 (196)
T cd03401         160 AKQVAQQEAERAKFVVEKAEQEKQAAVIRAEGEAEA  195 (196)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence            999999999999999999999999999999999987

A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.

>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=1.7e-39  Score=282.15  Aligned_cols=216  Identities=24%  Similarity=0.365  Sum_probs=191.1

Q ss_pred             EEEecCCeEEEEEccccCccceeeCCcceEEccccCccEEEeeeeeeeeeee-cccccCCcEEEEEEEEEeecCCCCHHH
Q 022958           38 LYNVEGGHRAIMFNRITGVKDKVYPEGTHLMVPWFERPVIYDVRARPHLVES-TSGSRDLQMVKIGLRVLTRPVADKLPT  116 (289)
Q Consensus        38 ~~~V~~g~~gVv~~r~gg~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~-~~~T~D~~~v~v~~~v~y~i~~~~~~~  116 (289)
                      +++|++||+||++ +||+..+.+++||+||++||+++++.+|++.+.++.+. .+.|+|++++++++++.|||  .|+..
T Consensus         1 ~~iV~~ge~~Vv~-~~Gk~~~~~~~pG~~~~~P~i~~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI--~d~~~   77 (242)
T cd03405           1 LFIVDEGEQAVVL-RFGEVVRVVTEPGLHFKLPFIQQVKKFDKRILTLDSDPQRVLTKDKKRLIVDAYAKWRI--TDPLR   77 (242)
T ss_pred             CEEeCCCeEEEEE-EcCccccccCCCCeeEEcCCcceEEEEcCEEEeccCCcceEEccCCcEEEEEEEEEEEE--cCHHH
Confidence            5799999999998 89877666899999999999999999999999888754 58999999999999999995  67888


Q ss_pred             HHHHhCcc--ccccccchHHHHHHHHHHhhcChhHHhhh-HHHHHHHHHHHHHHHhhcCCeEEEEEEeeccccCHHHHHH
Q 022958          117 VYRALGEN--YNERVLPSIIHETLKAVVAQYNASQLITQ-RETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSA  193 (289)
Q Consensus       117 ~~~~~g~~--~~~~~l~~~~~~~lr~~~~~~~~~ei~~~-R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~a  193 (289)
                      +|.+++..  ..+..|.+.+++.+|+++++++++|++++ |++|++.+.+.|++.+++||++|.++.|++|+||+++.++
T Consensus        78 ~~~~~~~~~~~~~~~i~~~~~~~lr~vi~~~~~~el~~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~i~~a  157 (242)
T cd03405          78 FYQAVGGEERAAETRLDQIVNSALRAEFGKRTLIELVSGERGELMEEIRRAVAEEAKELGIEVVDVRIKRIDLPEEVSES  157 (242)
T ss_pred             HHHHhcChHHHHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHHHHccCcEEEEEEEEeccCCHHHHHH
Confidence            88887742  23478999999999999999999999987 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcChhhHHH-HHHHH
Q 022958          194 IEAKQVAAQEAERA-------------------KYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFITL-RKIEA  253 (289)
Q Consensus       194 ie~~~~a~q~~~~a-------------------~~~i~~A~aea~~~~~~A~aeaea~~~~~~a~~~~p~~~~~-~~~e~  253 (289)
                      |+++..++++...+                   +..+..|++++++.+++|+|||+++++++++|+++|+++.+ +++++
T Consensus       158 i~~~~~ae~~~~a~~~~ae~~~~a~~~~aea~~~~~~~~Aea~a~a~~~~a~gea~a~~~~~~a~~~~p~~~~~~~~l~~  237 (242)
T cd03405         158 VYRRMRAERERIAAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIRGEGDAEAARIYAEAYGKDPEFYAFYRSLEA  237 (242)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            97766655533211                   23567899999999999999999999999999999999995 99999


Q ss_pred             HHH
Q 022958          254 ARE  256 (289)
Q Consensus       254 ~~~  256 (289)
                      ++.
T Consensus       238 ~~~  240 (242)
T cd03405         238 YRN  240 (242)
T ss_pred             HHh
Confidence            875

This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>TIGR01933 hflK HflK protein

Probab=100.00  E-value=3.1e-39  Score=283.33  Aligned_cols=236  Identities=18%  Similarity=0.243  Sum_probs=200.3

Q ss_pred             EEEecCCeEEEEEccccCccceeeCCcceEEccccCccEEEeeeeeeeeee-ecccccCCcEEEEEEEEEeecCCCCHHH
Q 022958           38 LYNVEGGHRAIMFNRITGVKDKVYPEGTHLMVPWFERPVIYDVRARPHLVE-STSGSRDLQMVKIGLRVLTRPVADKLPT  116 (289)
Q Consensus        38 ~~~V~~g~~gVv~~r~gg~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~-~~~~T~D~~~v~v~~~v~y~i~~~~~~~  116 (289)
                      +++|++||.||++ +||+ ..++++||+||++||+++++.+|++.+....+ ..+.|+|++.+.++++++|||  .|+..
T Consensus         1 ~~iV~~ge~~Vv~-~fGk-~~~~l~pGl~~~~P~i~~v~~~~~~~~~~~~~~~~v~T~D~~~v~vd~~v~yrI--~d~~~   76 (261)
T TIGR01933         1 IYTIGEAERGVVL-RFGK-YHRTVDPGLNWKPPFIEEVYPVNVTAVRNLRKQGLMLTGDENIVNVEMNVQYRI--TDPYK   76 (261)
T ss_pred             CEEeCCCeEEEEE-EcCc-cccccCCcceEECCCceEEEEeeeEEEEecCCcCeEEeCCCCEEEEEEEEEEEE--CCHHH
Confidence            5899999999998 8975 45689999999999999999999976432222 247899999999999999996  56666


Q ss_pred             HHHHhCccccccccchHHHHHHHHHHhhcChhHHhh-hHHHHHHHHHHHHHHHhhcC--CeEEEEEEeeccccCHHHHHH
Q 022958          117 VYRALGENYNERVLPSIIHETLKAVVAQYNASQLIT-QRETVSREIRKILTERAANF--NIALDDVSITSLTFGKEFTSA  193 (289)
Q Consensus       117 ~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~-~R~~i~~~v~~~l~~~l~~~--Gi~v~~v~I~~i~~p~~~~~a  193 (289)
                      ++.  +.++.+..+.+.+++++|+++++++++++++ +|++|++.+.+.+++.++.|  ||+|.+|.|++++||+++.++
T Consensus        77 ~~~--~~~~~~~~l~~~~~s~lR~vig~~~l~eil~~~R~~i~~~i~~~l~~~~~~~~~GI~V~~v~I~~i~~p~~v~~a  154 (261)
T TIGR01933        77 YLF--SVENPEDSLRQATDSALRGVIGDSTMDDILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARPPEEVKEA  154 (261)
T ss_pred             HHH--hCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEEecCCCHHHHHH
Confidence            554  4566778899999999999999999999998 89999999999999999865  999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcChhhHHH-HHHHH
Q 022958          194 IEAKQVAAQEAERA-------------------KYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFITL-RKIEA  253 (289)
Q Consensus       194 ie~~~~a~q~~~~a-------------------~~~i~~A~aea~~~~~~A~aeaea~~~~~~a~~~~p~~~~~-~~~e~  253 (289)
                      |++++.++|+.+++                   +..+..|++++++++++|+|||+++++++++|.++|+++.+ +++|+
T Consensus       155 ~~~~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~a~g~a~~~~~~~~ay~~~p~~~~~~~~le~  234 (261)
T TIGR01933       155 FDDVIIAREDEERYINEAEAYANEVVPKARGDAQRIIEEARGYKERRINRAKGDVARFTKLLAEYKKAPDVTRERLYLET  234 (261)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence            98888877655432                   12356788888899999999999999999999999999986 99999


Q ss_pred             HHHHHHHhcCCCCEEEEcCCCccccccch
Q 022958          254 AREIAQTIAHSANKVFLNSDDLLLNLQEM  282 (289)
Q Consensus       254 ~~~i~~~~~~~~~~i~l~~~~~~~~~~~~  282 (289)
                      ++++.   ++.++++++++++++|.+-+.
T Consensus       235 ~~~~~---~~~~~~~~~~~~~~~~~~~~~  260 (261)
T TIGR01933       235 MEKVL---SNTRKVLLDDKKGNNLLYLPL  260 (261)
T ss_pred             HHHHH---ccCCeEEEECCCCCeeeeecC
Confidence            99854   466667889898887776553

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)

>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.6e-40  Score=270.10  Aligned_cols=258  Identities=52%  Similarity=0.869  Sum_probs=242.8

Q ss_pred             HHHHHHHHHHHhhcccEEEecCCeEEEEEccccCccceeeCCcceEEccccCccEEEeeeeeeeeeeecccccCCcEEEE
Q 022958           22 KVGIIGGIGLYAAANSLYNVEGGHRAIMFNRITGVKDKVYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKI  101 (289)
Q Consensus        22 ~~~v~~~~~~~~~~~~~~~V~~g~~gVv~~r~gg~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~~~~T~D~~~v~v  101 (289)
                      -+++.+.++...+-+++|.|+.||++|+++||.|+...+.+.|.||.+||.++.+.||.+.++..++....|+|-+.|++
T Consensus        11 k~gl~l~v~~~~~~s~ly~vdgg~ravifdrf~gv~~~vvgegthflipw~qk~~i~d~rs~p~~v~~itGskdLQ~Vni   90 (271)
T KOG3083|consen   11 KFGLALAVAGGVVNSALYNVDGGHRAVIFDRFRGVQDQVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSKDLQNVNI   90 (271)
T ss_pred             ccchhhHHhhhhhhhhhcccCCCceeEEeecccchhhhcccCCceeeeeeccCcEEEeccCCCcccccccCchhhhcccc
Confidence            34455556667788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHhhcCCeEEEEEEe
Q 022958          102 GLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSI  181 (289)
Q Consensus       102 ~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I  181 (289)
                      ...+.|+...+.++.+|.++|.+|.+..+-++-...|++++++|+..|++++|+-++..+.+.|.++...+|+.+.++.|
T Consensus        91 Tlril~rp~~sqLP~If~~~G~dyDErVLpsI~~eiLKsVVa~FdA~eliTqRe~vS~~v~~~lt~rA~~Fgl~Lddvsi  170 (271)
T KOG3083|consen   91 TLRILFRPVVSQLPCIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSNDLTERAATFGLILDDVSI  170 (271)
T ss_pred             eEEEEecccccccchHHHhhcccccccccccchHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHhhCeeechhhh
Confidence            99999999899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC-hhhHHHHHHHHHHHHHHH
Q 022958          182 TSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANN-PAFITLRKIEAAREIAQT  260 (289)
Q Consensus       182 ~~i~~p~~~~~aie~~~~a~q~~~~a~~~i~~A~aea~~~~~~A~aeaea~~~~~~a~~~~-p~~~~~~~~e~~~~i~~~  260 (289)
                      .++.+.+++.+++|+||+|+||+||+++.+++|++++++.+|.||||++|+++++.+++.. ..+++++.+|+-+.++..
T Consensus       171 ThltfGkEFt~AvE~KQVAQQEAErarFvVeKAeQqk~aavIsAEGds~aA~li~~sla~aG~gLielrrlEAa~dia~~  250 (271)
T KOG3083|consen  171 THLTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQQKKAAVISAEGDSKAAELIANSLATAGDGLIELRRLEAAEDIAYQ  250 (271)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeecccchHHHHHHHHHHhhcCCceeeehhhhhHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999754 568899999999999999


Q ss_pred             hcCCCCEEEEcCCC-ccccc
Q 022958          261 IAHSANKVFLNSDD-LLLNL  279 (289)
Q Consensus       261 ~~~~~~~i~l~~~~-~~~~~  279 (289)
                      |+++.|+.|+|.|. .++++
T Consensus       251 Ls~s~nv~YLp~g~s~l~~l  270 (271)
T KOG3083|consen  251 LSRSRNVTYLPAGQSMLLQL  270 (271)
T ss_pred             HhcCCCceeccCCcceeccC
Confidence            99999999999874 44443

>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=2.1e-37  Score=272.54  Aligned_cols=226  Identities=20%  Similarity=0.240  Sum_probs=184.6

Q ss_pred             HHHHHHHhhcccEEEecCCeEEEEEccccCccceeeCCcceEEccccCccEEEe-eeee----------eeee---eecc
Q 022958           26 IGGIGLYAAANSLYNVEGGHRAIMFNRITGVKDKVYPEGTHLMVPWFERPVIYD-VRAR----------PHLV---ESTS   91 (289)
Q Consensus        26 ~~~~~~~~~~~~~~~V~~g~~gVv~~r~gg~~~~~~~pG~~~~~P~~~~v~~~~-~~~~----------~~~~---~~~~   91 (289)
                      +++++++++++|+++|++||+||++ +||+.. .+++||+||++||+++++.++ ++.+          ....   ...+
T Consensus         3 ~~~~~~~~~~~s~~~V~~ge~gVV~-~fGk~~-~~~~pGlh~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (266)
T cd03404           3 AALLVILWLLSGFYIVQPGERGVVL-RFGKYS-RTVEPGLHWKLPYPIEVVEVVPVFQLRSVGIPVRVGSVRSVPGESLM   80 (266)
T ss_pred             HHHHHHHHHHcEEEEECCCceEEeE-EcCccc-cccCCceeEecCCCcEEEEEecceeEEeeccccccccccCCCcccce
Confidence            4455567778899999999999997 897765 799999999999998876443 3211          1111   1247


Q ss_pred             cccCCcEEEEEEEEEeecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcChhHHhhh-HHHHHHHHHHHHHHHhh
Q 022958           92 GSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQ-RETVSREIRKILTERAA  170 (289)
Q Consensus        92 ~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~-R~~i~~~v~~~l~~~l~  170 (289)
                      .|+|++.+.+++++.|+|  .|+..++.  +..+.+..|.+.+++.+|+++++++++|++++ |+++++.+.+.+++.++
T Consensus        81 ~T~D~~~v~vd~~v~yrI--~d~~~~~~--~~~~~~~~l~~~~~~~lr~~i~~~~~~eil~~~R~~i~~~i~~~l~~~~~  156 (266)
T cd03404          81 LTGDENIVDVEFAVQYRI--SDPYDYLF--NVRDPEGTLRQAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAILD  156 (266)
T ss_pred             EeCCCCEEEEEEEEEEEE--CCHHHHHh--hCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHhh
Confidence            899999999999999996  56665544  34556678999999999999999999999986 99999999999999998


Q ss_pred             cC--CeEEEEEEeeccccCHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHhhhHH
Q 022958          171 NF--NIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERAK-------------------YIVEKAEQDKRSAIIRAQGEA  229 (289)
Q Consensus       171 ~~--Gi~v~~v~I~~i~~p~~~~~aie~~~~a~q~~~~a~-------------------~~i~~A~aea~~~~~~A~aea  229 (289)
                      .|  |++|.+|.|++++||+++.++|+++..++|++++++                   ..+..|++++++..++|+||+
T Consensus       157 ~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae~~a  236 (266)
T cd03404         157 AYKAGIEIVGVNLQDADPPEEVQDAFDDVNKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQGEA  236 (266)
T ss_pred             ccCCCeEEEEEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            66  999999999999999999999988888777554332                   245566677777888888899


Q ss_pred             HHHHHHHHHhhcChhhHH-HHHHHHHHHH
Q 022958          230 TSAQLIGQAIANNPAFIT-LRKIEAAREI  257 (289)
Q Consensus       230 ea~~~~~~a~~~~p~~~~-~~~~e~~~~i  257 (289)
                      ++.+++.++|+++|+++. ..++++++++
T Consensus       237 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  265 (266)
T cd03404         237 ARFESLLAEYKKAPDVTRERLYLETMEEV  265 (266)
T ss_pred             HHHHHHHHHHhhChHHHHHHHHHHHHHHh
Confidence            999999999999999764 5899998874

This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=4.5e-37  Score=269.41  Aligned_cols=224  Identities=18%  Similarity=0.258  Sum_probs=188.2

Q ss_pred             CCeEEEEEccccCccceeeCCcceEEccccCccE-EEeeeeeeeeeeecccccCCcEEEEEEEEEeecCCCCHHHHHHHh
Q 022958           43 GGHRAIMFNRITGVKDKVYPEGTHLMVPWFERPV-IYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRAL  121 (289)
Q Consensus        43 ~g~~gVv~~r~gg~~~~~~~pG~~~~~P~~~~v~-~~~~~~~~~~~~~~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~  121 (289)
                      +|+.||+. |||+ +.++++||+||++||++++. .++++.++++++.++.|+|++.|++|++++|||...++..++.++
T Consensus         1 q~~~~Vv~-rfGk-~~~~l~pGlhf~~P~i~~v~~~~~~r~~~~~~~~~~lTkD~~~V~vd~~v~yrI~d~~~~~~~~~~   78 (262)
T cd03407           1 QSQVAIIE-RFGK-FFKVAWPGCHFVIPLVETVAGRLSLRVQQLDVRVETKTKDNVFVTVVGQIQYRVSEENATDAFYKL   78 (262)
T ss_pred             CcEEEEEe-ecCc-ccccCCCCeEEEeccccceeeEEeeeEEEecCCCceEcCCCCEEEEEEEEEEEECCcHHHHHHHHc
Confidence            48999997 9965 55789999999999999984 899999999998889999999999999999997554544666555


Q ss_pred             CccccccccchHHHHHHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHhhcCCeEEEEEEeeccccCHHHHHHHHHHHHHH
Q 022958          122 GENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAA  201 (289)
Q Consensus       122 g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie~~~~a~  201 (289)
                      +  +....|.+.+++++|+++|+++++|++++|++|+..+.+.+++.+++|||.|.+|.|++++||+++.++|+++..|+
T Consensus        79 ~--~~~~~l~~~~~s~lR~vig~~~l~eil~~R~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~~p~~v~~A~~~~~~A~  156 (262)
T cd03407          79 G--NPEEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQ  156 (262)
T ss_pred             C--CHHHHHHHHHHHHHHHHhcCccHHHHHhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEecCCCHHHHHHHHHHHHHH
Confidence            4  33458999999999999999999999999999999999999999999999999999999999999999999888887


Q ss_pred             HHHHHH----H----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-------------ChhhH----HHHHHHHHHH
Q 022958          202 QEAERA----K----YIVEKAEQDKRSAIIRAQGEATSAQLIGQAIAN-------------NPAFI----TLRKIEAARE  256 (289)
Q Consensus       202 q~~~~a----~----~~i~~A~aea~~~~~~A~aeaea~~~~~~a~~~-------------~p~~~----~~~~~e~~~~  256 (289)
                      ++.+++    +    ..+..|++++++.+++|+|+|++.++++++...             .|+..    ..+|+|++++
T Consensus       157 ~~~~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~e~~~~  236 (262)
T cd03407         157 RQRVAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGLRESILSLADAVPGMTAKDVMDLLLVNQYFDTLKA  236 (262)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHH
Confidence            765533    1    356788888888888888888888887776421             23322    3589999999


Q ss_pred             HHHHhcCCCCEEEEcCC
Q 022958          257 IAQTIAHSANKVFLNSD  273 (289)
Q Consensus       257 i~~~~~~~~~~i~l~~~  273 (289)
                      ++.   ++++++++|.+
T Consensus       237 ~~~---~~~kviv~p~~  250 (262)
T cd03407         237 YGR---SSSTVVFRPHG  250 (262)
T ss_pred             HHh---CCCCEEEecCC
Confidence            875   44577889876

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins)

Probab=100.00  E-value=4e-35  Score=250.25  Aligned_cols=210  Identities=24%  Similarity=0.382  Sum_probs=180.1

Q ss_pred             ecCCeEEEEEccccCccceeeCCcceEEccccCcc-EEEeeeeeeeeeee-cccccCCcEEEEEEEEEeecCCCCHHHHH
Q 022958           41 VEGGHRAIMFNRITGVKDKVYPEGTHLMVPWFERP-VIYDVRARPHLVES-TSGSRDLQMVKIGLRVLTRPVADKLPTVY  118 (289)
Q Consensus        41 V~~g~~gVv~~r~gg~~~~~~~pG~~~~~P~~~~v-~~~~~~~~~~~~~~-~~~T~D~~~v~v~~~v~y~i~~~~~~~~~  118 (289)
                      |++||+||++ +||+.. .+++||+||++||++++ +.+|++.+.++++. .+.|+|++++.+++++.|||  .|+..++
T Consensus         1 V~~ge~~Vv~-~~G~~~-~~~~pG~~f~~P~~~~v~~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI--~d~~~~~   76 (215)
T cd03403           1 VPQYERGVVE-RLGKYH-RTLGPGLHFIIPFIDRIAYKVDLREQVLDVPPQEVITKDNVTVRVDAVLYYRV--VDPVKAV   76 (215)
T ss_pred             CCcceEEEEE-EcCcCc-cccCCcEEEEeccceEEEEEEeeEEEEEccCCceeEcCCCCEEEEEEEEEEEE--ecHHHHH
Confidence            6899999998 897654 46999999999999999 99999999999866 48999999999999999995  5666665


Q ss_pred             HHhCccccccccchHHHHHHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHhhcCCeEEEEEEeeccccCHHHHHHHHHHH
Q 022958          119 RALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQ  198 (289)
Q Consensus       119 ~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie~~~  198 (289)
                      ..  .++++..+.+.+++++|+++++++++|++++|+++++.+.+.|++.+.+|||+|.+|.|+++++|+++.++++++.
T Consensus        77 ~~--~~~~~~~l~~~~~~~lr~~i~~~~~~el~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~i~~i~~p~~~~~ai~~~~  154 (215)
T cd03403          77 YG--VEDYRYAISQLAQTTLRSVIGKMELDELLSEREEINAELVEILDEATDPWGVKVERVEIKDIILPQEIQEAMAKQA  154 (215)
T ss_pred             hc--CCCHHHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHHHhccCeEEEEEEEeeecCCHHHHHHHHHHH
Confidence            53  3455668999999999999999999999999999999999999999999999999999999999999999997554


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh---cChhhHHHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 022958          199 VAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIA---NNPAFITLRKIEAAREIAQTIAHSANKVFLNSD  273 (289)
Q Consensus       199 ~a~q~~~~a~~~i~~A~aea~~~~~~A~aeaea~~~~~~a~~---~~p~~~~~~~~e~~~~i~~~~~~~~~~i~l~~~  273 (289)
                      .              |+.++++++++|+|++++.++.+++.+   .+|.+++++++|+++.+++   ..+.+++++++
T Consensus       155 ~--------------A~~~~~a~i~~A~ge~~a~~~~aea~~~~~~~~~~~~~~~~e~~~~~~~---~~~~~~~~~~~  215 (215)
T cd03403         155 E--------------AEREKRAKIIEAEGERQAAILLAEAAKQAAINPAALQLRELETLEEIAK---EAASTVVFPAP  215 (215)
T ss_pred             H--------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh---ccCCeEEeeCC
Confidence            3              445566777888888888888887763   3699999999999999997   44456666553

Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local

>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=6e-35  Score=255.20  Aligned_cols=199  Identities=17%  Similarity=0.287  Sum_probs=170.2

Q ss_pred             hcccEEEecCCeEEEEEccccCccceeeCCcceEEccccCccEEEeeeeeeeeee-ecccccCCcEEEEE-EEEEeecCC
Q 022958           34 AANSLYNVEGGHRAIMFNRITGVKDKVYPEGTHLMVPWFERPVIYDVRARPHLVE-STSGSRDLQMVKIG-LRVLTRPVA  111 (289)
Q Consensus        34 ~~~~~~~V~~g~~gVv~~r~gg~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~-~~~~T~D~~~v~v~-~~v~y~i~~  111 (289)
                      +++|+++|++||+||++ |||+..+.+++||+||++||++++..++++.++++.+ ..+.|+||+.+++| ..++|.+++
T Consensus         1 ~~ssv~iV~ege~gVV~-RfGkv~~~~l~PGLHfkiPfId~V~~v~vrlq~~~~~~~~v~TkDg~~ItvD~i~v~~ivdp   79 (280)
T cd03406           1 LSSALHKIEEGHVGVYY-RGGALLTSTSGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLIP   79 (280)
T ss_pred             CCceEEEECCCeEEEEE-ECCcccccccCCceEEecCCceEEEEEEeEEEEeccCCcccccCCCcEEEEEEEEEEEecCH
Confidence            46799999999999998 9988777899999999999999999999999888764 45789999999999 568888877


Q ss_pred             CCHHHHHHHhCccccccccchHHHHHHHHHHhhcChhHHhh-hHHHHHHHHHHHHHHHhhcC--CeEEEEEEeeccccCH
Q 022958          112 DKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLIT-QRETVSREIRKILTERAANF--NIALDDVSITSLTFGK  188 (289)
Q Consensus       112 ~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~-~R~~i~~~v~~~l~~~l~~~--Gi~v~~v~I~~i~~p~  188 (289)
                      ..+...+.+++.++....|.+.+++++|+++|+++++|+++ +|+++...+++.+++.++.|  ||+|.+|.|++++||+
T Consensus        80 ~~~~~~~~~y~~~~~~~~I~~~Vrsavr~vig~~tldeVis~~Rd~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~P~  159 (280)
T cd03406          80 DSVYDIVKNYTADYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKIPE  159 (280)
T ss_pred             HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHhhhCCHHHHHhccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEEecCCCH
Confidence            77777777777778899999999999999999999999997 89999999999999999987  9999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022958          189 EFTSAIEAKQVAAQEAE-----RAKYIVEKAEQDKRSAIIRAQGEATSAQL  234 (289)
Q Consensus       189 ~~~~aie~~~~a~q~~~-----~a~~~i~~A~aea~~~~~~A~aeaea~~~  234 (289)
                      ++.++|+ +..++.+..     +.+.....||+++.+.+++|+|+|+-.++
T Consensus       160 ~V~~afe-rM~aER~k~~~~~~~~~~~~~~ae~~~~~~~~~a~~~~~~~~~  209 (280)
T cd03406         160 AIRRNYE-LMEAEKTKLLIAIQKQKVVEKEAETERKKAVIEAEKVAQVAKI  209 (280)
T ss_pred             HHHHHHH-HHHHHHHhhhhccchhHHHHHHhhHHHHHHHHHHHHHhhHHHH
Confidence            9999995 333333222     23345667888888888888887776543

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.8e-32  Score=240.97  Aligned_cols=238  Identities=26%  Similarity=0.370  Sum_probs=184.5

Q ss_pred             HHHHHHHHhhcccEEEecCCeEEEEEccccCccceeeC-CcceEEccc----cCccEEEeeeeeeeee-ee-cccccCCc
Q 022958           25 IIGGIGLYAAANSLYNVEGGHRAIMFNRITGVKDKVYP-EGTHLMVPW----FERPVIYDVRARPHLV-ES-TSGSRDLQ   97 (289)
Q Consensus        25 v~~~~~~~~~~~~~~~V~~g~~gVv~~r~gg~~~~~~~-pG~~~~~P~----~~~v~~~~~~~~~~~~-~~-~~~T~D~~   97 (289)
                      ++++++++++++++++|++++.+++. +||. ..+.++ ||+||++||    ......++.+.+.++. +. .+.|+|+.
T Consensus         8 ~~l~~~~~~~~~~~~~v~~~~~~vv~-r~G~-~~~~~~~pGl~f~iP~~~~~~~~~~~~~~~~~~~d~~~~q~viT~D~~   85 (291)
T COG0330           8 ILLVILIVLLFSSIFVVKEGERGVVL-RFGR-YTRTLGEPGLHFKIPFPEAIEEVVVRVDLRERTLDVGPPQEVITKDNV   85 (291)
T ss_pred             HHHHHHHHHHHceeEEEcCCceEEEE-Eecc-eeeecCCCceEEEcCCccceeeeeeeeeeEEEEeccCCcceEEecCCC
Confidence            36667788889999999999999998 9955 455777 999999999    3344677888888888 44 48999999


Q ss_pred             EEEEEEEEEeecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcChhHHhhhHH-HHHHHHHHHHHHHhhcCCeEE
Q 022958           98 MVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRE-TVSREIRKILTERAANFNIAL  176 (289)
Q Consensus        98 ~v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~-~i~~~v~~~l~~~l~~~Gi~v  176 (289)
                      .|++|++++||  +.|+..++.+  .++.+..+.+.+++.+|+++++++++|++++|+ .++..+.+.|++.+++||+.|
T Consensus        86 ~V~vd~~v~~r--v~d~~~~~~~--v~~~~~~l~~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~~~Gi~V  161 (291)
T COG0330          86 IVSVDAVVQYR--VTDPQKAVYN--VENAEAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKV  161 (291)
T ss_pred             EEEEEEEEEEE--EcCHHHHHHh--cCCHHHHHHHHHHHHHHHHHccccHHHHhhCchHHHHHHHHHHHHHhhhhcCcEE
Confidence            99999999999  5666655553  455888899999999999999999999999888 999999999999999999999


Q ss_pred             EEEEeeccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh-----------------
Q 022958          177 DDVSITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAI-----------------  239 (289)
Q Consensus       177 ~~v~I~~i~~p~~~~~aie~~~~a~q~~~~a~~~i~~A~aea~~~~~~A~aeaea~~~~~~a~-----------------  239 (289)
                      .+|.|++++||+++..+++++..++++. ++  .+..|++++++.+++|+|++++..+++++.                 
T Consensus       162 ~~V~i~~i~~p~ev~~a~~~~~~Aer~~-ra--~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a~~~~~a~~~~~~~~  238 (291)
T COG0330         162 VDVEIKDIDPPEEVQAAMEKQMAAERDK-RA--EILEAEGEAQAAILRAEGEAEAAIILAEAEAEAEVIARAEADAAKII  238 (291)
T ss_pred             EEEEEeecCCCHHHHHHHHHHHHHHHHH-HH--HHHHhHhHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence            9999999999999999997555555443 33  455566655555555555555555554443                 


Q ss_pred             ----hcC---hhhHHHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 022958          240 ----ANN---PAFITLRKIEAAREIAQTIAHSANKVFLNSD  273 (289)
Q Consensus       240 ----~~~---p~~~~~~~~e~~~~i~~~~~~~~~~i~l~~~  273 (289)
                          ..+   |.+..+++++.+.+.+.  +++++++++|.+
T Consensus       239 ~~~~~~~~~~~~~~~~r~~~~~~~~~~--~~~~~~v~~p~~  277 (291)
T COG0330         239 AAALREAPAAPQALAQRYLEELLEIAL--AGNSKVVVVPNS  277 (291)
T ss_pred             HhhcccccchhHHHHHHHHHHHHHHhh--CCCCeEEEecCC
Confidence                333   45667789988888664  233444455544

>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]

Probab=100.00  E-value=8.3e-34  Score=239.26  Aligned_cols=235  Identities=19%  Similarity=0.275  Sum_probs=202.4

Q ss_pred             HHHHHHHHHHHHhhcccEEEecCCeEEEEEccccCcc-ceeeCCcceEEccccCccEEEeeeeeeeeeeec-ccccCCcE
Q 022958           21 IKVGIIGGIGLYAAANSLYNVEGGHRAIMFNRITGVK-DKVYPEGTHLMVPWFERPVIYDVRARPHLVEST-SGSRDLQM   98 (289)
Q Consensus        21 ~~~~v~~~~~~~~~~~~~~~V~~g~~gVv~~r~gg~~-~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~~-~~T~D~~~   98 (289)
                      +.++++++.+-+-++.|+.+|++.|++|++ |.|+.. ...-+||+.|.+|++++.+++|.+.+.++++++ +.|+|.+.
T Consensus        38 ~S~llvi~TfP~S~~fclKiv~eYeR~VIf-RLGRl~~~~~rGPGi~fvlPCIDt~~kVDLRt~sfnVPpqeIltkDsvt  116 (288)
T KOG2621|consen   38 LSFLLVLMTFPISIWFCLKIVQEYERAVIF-RLGRLRTGGARGPGLFFLLPCIDTFRKVDLRTQSFNVPPQEILTKDSVT  116 (288)
T ss_pred             HHHHHHHHHhHHHHHHHHHhhHHHhhhhhe-eeeeccccCCCCCCeEEEecccceeeeeeeeEEeecCCHHHHhcccceE
Confidence            444555556666678899999999999999 997753 457799999999999999999999999999985 99999999


Q ss_pred             EEEEEEEEeecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHhhcCCeEEEE
Q 022958           99 VKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDD  178 (289)
Q Consensus        99 v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~  178 (289)
                      +++|+.|+||+  .|+..-+.  +.++...-.+-.+++.+|+++++.++.|+++.|+.|+.++...|++....||++|++
T Consensus       117 vsVdAvVyyri--~dpi~sv~--~V~Da~~sTr~lAqttLrn~lgtk~L~eils~r~~is~~~~~~Ld~~T~~WGvkVeR  192 (288)
T KOG2621|consen  117 ISVDAVVYYRI--SDPIIAVN--NVGDADNATRLLAQTTLRNYLGTKTLSEILSSREVIAQEAQKALDEATEPWGVKVER  192 (288)
T ss_pred             EEeceEEEEEe--cCHHHHHH--hccCHHHHHHHHHHHHHHHHHccCcHHHHHHhHHHHHHHHHHHhhhcccccceEEEE
Confidence            99999999994  66655554  456666667889999999999999999999999999999999999999999999999


Q ss_pred             EEeeccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH---hhcChhhHHHHHHHHHH
Q 022958          179 VSITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQA---IANNPAFITLRKIEAAR  255 (289)
Q Consensus       179 v~I~~i~~p~~~~~aie~~~~a~q~~~~a~~~i~~A~aea~~~~~~A~aeaea~~~~~~a---~~~~p~~~~~~~~e~~~  255 (289)
                      |.|+||++|.+.+.+|-.      +++        |..++.++++.||||..|.+.++++   ++.+|..++++|++++.
T Consensus       193 VEikDvrlp~qlqramaa------eAe--------A~reA~Akviaaege~~as~al~~aa~v~~~sp~alqLryLqtl~  258 (288)
T KOG2621|consen  193 VEIKDVRLPAQLQRAMAA------EAE--------ATREARAKVIAAEGEKKASEALKEAADVISESPIALQLRYLQTLN  258 (288)
T ss_pred             EEEeeeechHhhhhhhhc------hhh--------hhhhhhhhHHHHHhhhHHHHHHHHhhccccCCchhhhhhhhhcch
Confidence            999999999999988831      111        6677889999999999999999877   57899999999999999


Q ss_pred             HHHHHhcCCCCEEEEcCCCccc
Q 022958          256 EIAQTIAHSANKVFLNSDDLLL  277 (289)
Q Consensus       256 ~i~~~~~~~~~~i~l~~~~~~~  277 (289)
                      +++.   .+++++++|-.-+++
T Consensus       259 sia~---e~~~tivfP~p~e~l  277 (288)
T KOG2621|consen  259 SIAA---EKNSTIVFPLPIDLL  277 (288)
T ss_pred             hhhc---CCCCCcccCCCHHHH
Confidence            9874   778888988654443

>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.97  E-value=3.6e-30  Score=218.93  Aligned_cols=161  Identities=18%  Similarity=0.211  Sum_probs=142.3

Q ss_pred             cEEEecCCeEEEEEccccCccceeeCCcceEEccccCccEEEeeeeeeeeeeec-ccccCCcEEEEEEEEEeecCCCCHH
Q 022958           37 SLYNVEGGHRAIMFNRITGVKDKVYPEGTHLMVPWFERPVIYDVRARPHLVEST-SGSRDLQMVKIGLRVLTRPVADKLP  115 (289)
Q Consensus        37 ~~~~V~~g~~gVv~~r~gg~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~~-~~T~D~~~v~v~~~v~y~i~~~~~~  115 (289)
                      |+++|+|||.||++ +||+..+.+.+||+||++||++ ..++|++.++++.+.. +.|+|++++.+++.+.|||  .|+.
T Consensus         1 g~~iV~~ge~~Vv~-rfGk~~~t~~~pGL~~~~P~~~-~~~vd~R~~~~~~~~~~v~T~D~~~v~V~~~V~~rV--~Dp~   76 (219)
T cd03402           1 GLFVVEPNQARVLV-LFGRYIGTIRRTGLRWVNPFSS-KKRVSLRVRNFESEKLKVNDANGNPIEIAAVIVWRV--VDTA   76 (219)
T ss_pred             CeEEECCCeeEEEE-EcCcCcccccCCceEEEeccce-EEEEeeEEEEecCCCceeEcCCCCEEEEEEEEEEEE--cCHH
Confidence            68999999999998 9988776667999999999985 5889999999888764 8999999999999999995  5666


Q ss_pred             HHHHHhCccccccccchHHHHHHHHHHhhcChhHHhh-------hHHHHHHHHHHHHHHHhhcCCeEEEEEEeeccccCH
Q 022958          116 TVYRALGENYNERVLPSIIHETLKAVVAQYNASQLIT-------QRETVSREIRKILTERAANFNIALDDVSITSLTFGK  188 (289)
Q Consensus       116 ~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~-------~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~  188 (289)
                      +++.  +.++++..+...+++++|+++++|+++++++       +|++++.++.+.+++.++.|||+|.+++|+++.||+
T Consensus        77 ka~~--~v~~~~~~l~~~~~salR~vig~~~~d~il~~~~~l~~~r~~I~~~l~~~l~~~l~~~GI~V~~v~I~~l~~p~  154 (219)
T cd03402          77 KAVF--NVDDYEEFVHIQSESALRHVASQYPYDDPVNKETSLRGNSDEVSDELARELQERLAVAGVEVVEARITHLAYAP  154 (219)
T ss_pred             HHHH--HcCCHHHHHHHHHHHHHHHHHccCcHHHHhccccccccCHHHHHHHHHHHHHHHHHhhCcEEEEEEEEeecCCH
Confidence            5544  3455677899999999999999999999985       679999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 022958          189 EFTSAIEAKQVAAQE  203 (289)
Q Consensus       189 ~~~~aie~~~~a~q~  203 (289)
                      ++.++|+++++|+++
T Consensus       155 ei~~am~~R~~Ae~~  169 (219)
T cd03402         155 EIAQAMLQRQQASAI  169 (219)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999877754443

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance

Probab=99.96  E-value=1.2e-29  Score=209.89  Aligned_cols=162  Identities=29%  Similarity=0.481  Sum_probs=112.9

Q ss_pred             EEecCCeEEEEEccccCccceeeCCcceEEccccCccEEEeeeeeeeeeee---cccccCCcEEEEEEEEEeecCCCCHH
Q 022958           39 YNVEGGHRAIMFNRITGVKDKVYPEGTHLMVPWFERPVIYDVRARPHLVES---TSGSRDLQMVKIGLRVLTRPVADKLP  115 (289)
Q Consensus        39 ~~V~~g~~gVv~~r~gg~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~---~~~T~D~~~v~v~~~v~y~i~~~~~~  115 (289)
                      ++|++||+||++ ++|+... +++||+||.+||.++++.+|++.+++++..   .+.|+|++++.+++++.|++  +++.
T Consensus         1 ~~V~~g~~~V~~-~~G~~~~-~~~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~t~D~~~v~v~~~v~y~i--~~~~   76 (179)
T PF01145_consen    1 YTVPPGEVGVVV-RFGKVKD-VLGPGLHFVIPFIQKVYVYPTRVQTIEFTREPITVRTKDGVPVDVDVTVTYRI--EDPP   76 (179)
T ss_dssp             ---------------------------------EEE--S--SS-EEEEEEE--EEEE-TTS-EEEEEEEEEEEE--S-CC
T ss_pred             CEeCCCEEEEEE-ECCeEeE-EECCCeEEEeCCcCeEEEEeCEEEecccchhhhhhhhcccceeeeeEEEEEEe--chHH
Confidence            579999999998 6766554 999999999999899999999999999998   79999999999999999996  7777


Q ss_pred             HHHHHh--CccccccccchHHHHHHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHhhcCCeEEEEEEeeccccCHHHHHH
Q 022958          116 TVYRAL--GENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSA  193 (289)
Q Consensus       116 ~~~~~~--g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~a  193 (289)
                      .++.++  +.++.+..|++.+++++|+++++++++|++++|.++.+.+++.|++.+.++|++|.++.|.++++|+++.++
T Consensus        77 ~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~v~~~l~~~~~~~Gi~i~~v~i~~~~~~~~~~~~  156 (179)
T PF01145_consen   77 KFVQNYEGGEEDPENLLRQIVESALREVISSYSLEEIYSNREEIADEVREQLQEALEEYGIEITSVQITDIDPPQEVEEA  156 (179)
T ss_dssp             CCCCCCSS-HCHHHHHHHHHHHHHHHHHHHCS-HHHHHHTHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEECTTHHHH
T ss_pred             HHHHhhhcchhhhhhhhhhhhhhhhheEeeeeehHHhhhhhhhhhHhHHHHHhhhccccEEEEEEEEEeecCCCHHHHHH
Confidence            788777  467888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 022958          194 IEAKQVAAQEA  204 (289)
Q Consensus       194 ie~~~~a~q~~  204 (289)
                      +++++.+++++
T Consensus       157 i~~~~~a~~~~  167 (179)
T PF01145_consen  157 IEEKQRAEQEA  167 (179)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            98777666665

A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.

>smart00244 PHB prohibitin homologues

Probab=99.96  E-value=3.7e-28  Score=197.46  Aligned_cols=156  Identities=26%  Similarity=0.406  Sum_probs=138.5

Q ss_pred             ccEEEecCCeEEEEEccccCccceeeCCcceEEccccCccEEEeeeeeeeeeee-cccccCCcEEEEEEEEEeecCCCCH
Q 022958           36 NSLYNVEGGHRAIMFNRITGVKDKVYPEGTHLMVPWFERPVIYDVRARPHLVES-TSGSRDLQMVKIGLRVLTRPVADKL  114 (289)
Q Consensus        36 ~~~~~V~~g~~gVv~~r~gg~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~-~~~T~D~~~v~v~~~v~y~i~~~~~  114 (289)
                      +|+++|++||+||++ +||+... +++||+||++||+++++.++++.+.+..+. .+.|+|++++++++++.||+  .|+
T Consensus         1 ~~~~~V~~g~~~v~~-~~G~~~~-~~~pG~~~~~P~~~~~~~~~~~~~~~~~~~~~~~t~d~~~v~v~~~v~~rv--~d~   76 (160)
T smart00244        1 AAIKVVGEGEAGVVE-RLGRVLR-VLGPGLHFLIPFIDRVKKVDLRAQTDDVPPQEIITKDNVKVSVDAVVYYRV--LDP   76 (160)
T ss_pred             CcEEEEcccEEEEEE-ecCcccc-ccCCCEEEEecceeEEEEEeeEEEeecCCceEEEecCCcEEEEeEEEEEEE--ccH
Confidence            589999999999998 8977665 899999999999999999999999988865 58999999999999999995  444


Q ss_pred             HHHHHHh-CccccccccchHHHHHHHHHHhhcChhHHhh-hHHHHHHHHHHHHHHHhhcCCeEEEEEEeeccccCHHHHH
Q 022958          115 PTVYRAL-GENYNERVLPSIIHETLKAVVAQYNASQLIT-QRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTS  192 (289)
Q Consensus       115 ~~~~~~~-g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~-~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~  192 (289)
                      ..++.+. |.++  ..+.+.+++++|+++++++++|+++ +|+++++.+.+.+++.++++|+++.++.|+++++|+++++
T Consensus        77 ~~~~~~~~~~~~--~~l~~~i~~~ir~~i~~~~~~~i~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~i~~i~~p~~i~~  154 (160)
T smart00244       77 LKAVYRVLDADY--AVIEQLAQTTLRSVIGKMTLDELLTDEREKISENIREELNERAEAWGIEVEDVEIKDIRLPEEIQE  154 (160)
T ss_pred             HHHhhhcCCHHH--HHHHHHHHHHHHHHHccccHHHHHHhhHHHHHHHHHHHHHHHHHhCCCEEEEEEEEecCCCHHHHH
Confidence            4444333 2221  5799999999999999999999998 7999999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 022958          193 AIEAK  197 (289)
Q Consensus       193 aie~~  197 (289)
                      +++++
T Consensus       155 ai~~k  159 (160)
T smart00244      155 AMEQQ  159 (160)
T ss_pred             HHHhh
Confidence            99865

prohibitin homologues

>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]

Probab=99.95  E-value=7.4e-29  Score=206.92  Aligned_cols=187  Identities=17%  Similarity=0.263  Sum_probs=151.3

Q ss_pred             ccEEE--ecCCeEEEEEccccCccceeeCCcceEEccccCccEEE-eeee-eeeeeeecccccCCcEEEEEEEEEeecCC
Q 022958           36 NSLYN--VEGGHRAIMFNRITGVKDKVYPEGTHLMVPWFERPVIY-DVRA-RPHLVESTSGSRDLQMVKIGLRVLTRPVA  111 (289)
Q Consensus        36 ~~~~~--V~~g~~gVv~~r~gg~~~~~~~pG~~~~~P~~~~v~~~-~~~~-~~~~~~~~~~T~D~~~v~v~~~v~y~i~~  111 (289)
                      .|+..  ||+.+++|+ +|| |++++++.||+||..|+++++..+ +.+. +.........|+||+.+.++++++||+ .
T Consensus         5 ~n~vi~~VpQ~~a~Vv-ER~-GkF~~iLePG~~fl~p~~d~i~~v~~lkeia~~~~~q~aiTkDNV~v~idgvly~rv-~   81 (301)
T KOG2620|consen    5 TNTVIRFVPQQEAAVV-ERF-GKFHRILEPGLHFLPPVIDKIAYVHSLKEIAILDPKQEAITKDNVFVQIDGVLYYRV-V   81 (301)
T ss_pred             ceeeEEeechhHhHHH-HHh-hhhhhhcCCcceechhhhhhHHHHHHHHHHhhcccccceeecccEEEEEEEEEEEEE-e
Confidence            34444  999999999 799 667889999999999998877643 3333 333333458899999999999999997 4


Q ss_pred             CCHH--HHHHHhCccccccccchHHHHHHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHhhcCCeEEEEEEeeccccCHH
Q 022958          112 DKLP--TVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKE  189 (289)
Q Consensus       112 ~~~~--~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~  189 (289)
                      ++..  ++|   |.++.+..+..++++.+|+.++++++|.++.+|+.++..+.++++..+..||+++....|+||.||+.
T Consensus        82 dp~~~dAsY---gvenp~~aI~qlaqttmRsevgkltLD~vFeer~~ln~sI~eainkA~~~wG~~clr~eIrDI~pp~~  158 (301)
T KOG2620|consen   82 DPYADDASY---GVENPEYAIQQLAQTTMRSEVGKLTLDKVFEERNSLNKSIVEAINKAMEAWGYECLRYEIRDIEPPPS  158 (301)
T ss_pred             ccccccccc---ccCCHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCHH
Confidence            4444  444   78888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 022958          190 FTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATS  231 (289)
Q Consensus       190 ~~~aie~~~~a~q~~~~a~~~i~~A~aea~~~~~~A~aeaea  231 (289)
                      +..+|+ .|.+.+...+|  .+..+|+++++++.+|+|++++
T Consensus       159 V~~AM~-~q~~AeR~krA--ailesEger~~~InrAEGek~s  197 (301)
T KOG2620|consen  159 VKRAMN-MQNEAERMKRA--AILESEGERIAQINRAEGEKES  197 (301)
T ss_pred             HHHHHH-HHHHHHHHHHH--HHhhhhhhhHHhhhhhcchhhh
Confidence            999996 55555544444  3556666666666666665554

>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only]

Probab=99.92  E-value=1.1e-22  Score=166.93  Aligned_cols=171  Identities=13%  Similarity=0.238  Sum_probs=147.8

Q ss_pred             HHHHHHHHHhhcccEEEecCCeEEEEEccccCccceeeCCcceEEccccCccEEEeeeeeeeeeeec-ccccCCcEEEEE
Q 022958           24 GIIGGIGLYAAANSLYNVEGGHRAIMFNRITGVKDKVYPEGTHLMVPWFERPVIYDVRARPHLVEST-SGSRDLQMVKIG  102 (289)
Q Consensus        24 ~v~~~~~~~~~~~~~~~V~~g~~gVv~~r~gg~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~~-~~T~D~~~v~v~  102 (289)
                      .+++.+++.+++++++.|++||+||.+ |-|.-...+.+||+|+.+||+.++..+.++.|+-++... +.|+.|+.+.+|
T Consensus         9 ~~~~a~~~~~~~s~vHkieEGHvgvYy-RGGALL~~~t~PG~Hl~lPFiTt~ksVQvTLQTDev~nvPCGTsGGVlIyfd   87 (322)
T KOG2962|consen    9 AAAIALLVAFLSSAVHKIEEGHVGVYY-RGGALLTSITGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVLIYFD   87 (322)
T ss_pred             HHHHHHHHHHHHHHHhhcccCceEEEE-ecceeeeccCCCCcEEEeeeeeceeeeEEEeeccccccCCCCCCCcEEEEEe
Confidence            344456667788999999999999998 643356678999999999999999999998888777653 899999999887


Q ss_pred             -EEEEeecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcChhHHh-hhHHHHHHHHHHHHHHHhhcC--CeEEEE
Q 022958          103 -LRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLI-TQRETVSREIRKILTERAANF--NIALDD  178 (289)
Q Consensus       103 -~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~-~~R~~i~~~v~~~l~~~l~~~--Gi~v~~  178 (289)
                       +-|.-++.++.+.++..+|+.+|...++-+-+...+.+.++..++.|++ .--++|.++++..|+.+|..+  |++|..
T Consensus        88 rIEVVN~L~~d~Vydiv~NYtvdYD~~lIfnKiHHE~NQFCS~HtLQeVYIdlFDqIDE~lK~ALQ~Dl~~mAPGl~iqa  167 (322)
T KOG2962|consen   88 RIEVVNFLRPDAVYDIVKNYTVDYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKDALQADLTRMAPGLEIQA  167 (322)
T ss_pred             hhhhhhhhchhHHHHHHHHcccCCcchhhhhHHHHHHHhHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhhCCCcEEEE
Confidence             4454455688888999999999999999999999999999999999998 578999999999999999754  999999


Q ss_pred             EEeeccccCHHHHHHHH
Q 022958          179 VSITSLTFGKEFTSAIE  195 (289)
Q Consensus       179 v~I~~i~~p~~~~~aie  195 (289)
                      |++.....|+.++..+|
T Consensus       168 VRVTKPkIPEaiRrN~E  184 (322)
T KOG2962|consen  168 VRVTKPKIPEAIRRNFE  184 (322)
T ss_pred             EEecCCCChHHHHHhHH
Confidence            99999999999998885

>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.85  E-value=1.7e-20  Score=146.28  Aligned_cols=120  Identities=22%  Similarity=0.343  Sum_probs=112.3

Q ss_pred             EeeeeeeeeeeecccccCCcEEEEEEEEEeecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcChhHHhh-hHHH
Q 022958           78 YDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLIT-QRET  156 (289)
Q Consensus        78 ~~~~~~~~~~~~~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~-~R~~  156 (289)
                      |+++.++...+..+.|+||+++.+++++.|+|.+.++..+|.++|.++.+..|.+.+++++|+++++|+++|+++ +|++
T Consensus         3 ~~~r~~~~~~~~~v~T~D~~~v~vd~~v~y~V~~~~~~~~~~~~~~~~~~~~i~~~~~~~lR~~~~~~~~~e~i~~~R~~   82 (124)
T cd03400           3 YSTRLQEVDEKIDVLSKEGLSINADVSVQYRINPNKAAAVHSKLGTDYARKIVRPTFRSLVREVTGRYTAEQIYSTKRKE   82 (124)
T ss_pred             ccceeeecccceEEECCCCCEEEEEEEEEEEEChhhHHHHHHHhCcchhheeechhHHHHHHHHhcCCCHHHHhhhhHHH
Confidence            677888888888899999999999999999998888888898888887888999999999999999999999996 8999


Q ss_pred             HHHHHHHHHHHHhhcCCeEEEEEEeeccccCHHHHHHHHHH
Q 022958          157 VSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAK  197 (289)
Q Consensus       157 i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie~~  197 (289)
                      |++++.+.++..+.+||++|.++.|++++||+++.+|+++|
T Consensus        83 i~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~P~~v~~aI~~k  123 (124)
T cd03400          83 IESAIKKELIEEFVGDGLILEEVLLRNIKLPDQIADAIEAK  123 (124)
T ss_pred             HHHHHHHHHHHHhccCCeEEEEEEEecccCCHHHHHHHHhc
Confidence            99999999999999999999999999999999999999865

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.83  E-value=1e-19  Score=154.26  Aligned_cols=160  Identities=16%  Similarity=0.198  Sum_probs=132.3

Q ss_pred             hhcccEEEecCCeEEEEEccccCccceeeCCcceEEcc----ccC---------------ccEEEeeeeeeeee------
Q 022958           33 AAANSLYNVEGGHRAIMFNRITGVKDKVYPEGTHLMVP----WFE---------------RPVIYDVRARPHLV------   87 (289)
Q Consensus        33 ~~~~~~~~V~~g~~gVv~~r~gg~~~~~~~pG~~~~~P----~~~---------------~v~~~~~~~~~~~~------   87 (289)
                      +..+|.++|++||.||++ ++|+. .++++||.|+.+|    ++.               .++.++.+.+....      
T Consensus        11 i~~~s~~iV~e~~~av~~-~~Gk~-~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~   88 (207)
T cd03408          11 IKNGSQLIVREGQAAVFV-NEGKV-ADVFAPGGYYLTTNNLPVLAFLLSGDKGFSSPFKGEVYFFNTRVFTDLLWGTPAP   88 (207)
T ss_pred             cccCCEEEEcCCcEEEEE-ECCEE-EEEecCCcceeeecCccHHHHhcChhhhCcCCceeEEEEEECEEEeccccCCCCC
Confidence            356799999999999998 78554 5678888776654    332               25667777654421      


Q ss_pred             -eecccccCCcEEEEEEEEEeecCCCCHHHHHHHhCcc-------ccccccchHHHHHHHHHHhhcChhHHhhh--HHHH
Q 022958           88 -ESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGEN-------YNERVLPSIIHETLKAVVAQYNASQLITQ--RETV  157 (289)
Q Consensus        88 -~~~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~g~~-------~~~~~l~~~~~~~lr~~~~~~~~~ei~~~--R~~i  157 (289)
                       .....|+|++++.+++++.|+  +.|+..++.+++..       .....+.+.+++++|++++++++++++.+  |+++
T Consensus        89 ~~~~~~~~~~v~v~v~~~~~~k--I~Dp~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~lr~~i~~~~~~~l~~~~~r~~i  166 (207)
T cd03408          89 VFGRDSEFGGVPLRAFGTYSLK--VTDPVLFVTNIVGTRGLFTVEDLEKSLRALIVAALSSALSESGLAVMLLAANRDEL  166 (207)
T ss_pred             eeeeCCccceEEEEeeEEEEEE--EcCHHHHHHHhcCCCcceeHHHHHHHHHHHHHHHHHHHHHhcCCeeEEhhhhHHHH
Confidence             223568899999999999999  57888999888532       35668999999999999999999999986  9999


Q ss_pred             HHHHHHHHHHHhhcCCeEEEEEEeeccccCHHHHHHHHH
Q 022958          158 SREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEA  196 (289)
Q Consensus       158 ~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie~  196 (289)
                      ++.+++.+++.+.+||++|.++.|++|++|+++++++.+
T Consensus       167 ~~~v~~~l~~~~~~~Gi~i~~v~I~~i~~p~e~~~ai~~  205 (207)
T cd03408         167 SKAVREALAPWFASFGLELVSVYIESISYPDEVQKLIDK  205 (207)
T ss_pred             HHHHHHHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHh
Confidence            999999999999999999999999999999999999864

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.81  E-value=2.9e-18  Score=159.39  Aligned_cols=167  Identities=16%  Similarity=0.233  Sum_probs=135.3

Q ss_pred             HHHHhhcccEEEecCCeEEEEEc-ccc------CccceeeCCcceEEccccCccEEEeeeeeeeeee-ecccccCCcEEE
Q 022958           29 IGLYAAANSLYNVEGGHRAIMFN-RIT------GVKDKVYPEGTHLMVPWFERPVIYDVRARPHLVE-STSGSRDLQMVK  100 (289)
Q Consensus        29 ~~~~~~~~~~~~V~~g~~gVv~~-r~g------g~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~-~~~~T~D~~~v~  100 (289)
                      ++++|+...+|++.+...+++.+ +|.      |....++.+|+||++|+++...+++.+..++++. ..+.|+||.+++
T Consensus        25 lv~if~~~~~y~~a~~~~aLI~~g~~~g~~~~~g~~~~vV~gGg~~v~Pi~q~~~r~~l~~i~l~v~~~~v~t~Dg~p~~  104 (548)
T COG2268          25 LVLIFFGKRFYIIARPNEALIRTGSKLGSKDEAGGGQKVVRGGGAIVMPIFQTIERMSLTTIKLEVEIDNVYTKDGMPLN  104 (548)
T ss_pred             HHHHHHhheeEEecCCCceEEEeccccCCcccccCCccEEecCceEEecceeeeEEeeeeeeeeeeeeeeeEecCCCccc
Confidence            33333334566554444445432 221      5556799999999999999999999999999888 569999999999


Q ss_pred             EEEEEEeecCC--CCHHHHHHHhCcc----ccccccchHHHHHHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHhhcCCe
Q 022958          101 IGLRVLTRPVA--DKLPTVYRALGEN----YNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNI  174 (289)
Q Consensus       101 v~~~v~y~i~~--~~~~~~~~~~g~~----~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi  174 (289)
                      +++.++.++..  .+...+..++|..    .....+...+++.+|.+++++++.++.++|..|++.+...+..+|.+.|+
T Consensus       105 v~~~a~v~i~~~~~dI~~aae~~g~Kg~~~~l~~~~~~~l~~~lR~i~a~~t~~el~edR~~F~~~V~~~v~~dL~k~Gl  184 (548)
T COG2268         105 VEAVAYVKIGDTFQDIATAAERFGGKGSREDLEQLAEDTLEGALRAVLAQMTVEELNEDRLGFAQVVQEVVGDDLSKMGL  184 (548)
T ss_pred             eeEEEEEEecCCHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHhhHHhhHHHHHHHHHHHHHHhcCe
Confidence            99999999732  2445666666644    56677889999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeeccccC-------HHHHHHHH
Q 022958          175 ALDDVSITSLTFG-------KEFTSAIE  195 (289)
Q Consensus       175 ~v~~v~I~~i~~p-------~~~~~aie  195 (289)
                      .+.++.|.++..+       ..|.++.=
T Consensus       185 ~l~s~~I~~i~d~~~~~~d~~~yLda~G  212 (548)
T COG2268         185 VLDSLAINDINDTSKENQDPNNYLDALG  212 (548)
T ss_pred             eeeeeeecccccccccccChhhhhhhcC
Confidence            9999999999998       88888873

>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.71  E-value=5.7e-15  Score=128.44  Aligned_cols=153  Identities=12%  Similarity=0.187  Sum_probs=129.2

Q ss_pred             EEEecCCeEEEEEccccCccceeeCCcceEEccccCccEEEeeeeeeeeeeec-ccccCCcEEEEEEEEEeecCCCCHHH
Q 022958           38 LYNVEGGHRAIMFNRITGVKDKVYPEGTHLMVPWFERPVIYDVRARPHLVEST-SGSRDLQMVKIGLRVLTRPVADKLPT  116 (289)
Q Consensus        38 ~~~V~~g~~gVv~~r~gg~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~~-~~T~D~~~v~v~~~v~y~i~~~~~~~  116 (289)
                      |++..+.+..++. . ||.....+-+| .|.+|| +++.++|+++-++++... +.|+.|+|+.+.+.++..+..+++..
T Consensus         2 f~~~~~~~~l~it-g-~g~~~~~lv~~-~wvf~w-q~~q~~~ln~mtl~~~~e~v~tsegvP~~vtgVaqvki~~~~~~e   77 (428)
T KOG2668|consen    2 FKVAGASQYLAIT-G-GGIEDIKLVKK-SWVFPW-QQCTVFDVSPMTLTFKVENVMTSEGVPFVVTGVAQVKIRVDDADE   77 (428)
T ss_pred             CccCCccceEEee-c-ccccCceeccc-ceeeee-eeeeEEeecceeeeeecchhhcccCCceEeeeeEEEeeccCCHHH
Confidence            4566788887885 2 45555556666 477889 999999999999999886 99999999999999999998888654


Q ss_pred             HHHH-----hC--ccccccccchHHHHHHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHhhcCCeEEEEEEeeccccCH-
Q 022958          117 VYRA-----LG--ENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGK-  188 (289)
Q Consensus       117 ~~~~-----~g--~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~-  188 (289)
                      +...     +|  .+....++...+++..|.+++++|++|+|.+|.+|.+.+.+..+.++.++||+|.+++|+|+...+ 
T Consensus        78 lL~~A~e~flgK~~~eIn~~vl~tlEGh~Rai~asmTvEEIyKdrk~F~k~Vfeva~~dl~~mGi~I~s~tiKdl~D~~g  157 (428)
T KOG2668|consen   78 LLLYACEQFLGKSSNEINELVLGTLEGHTRAILASMTVEEIYKDRKEFKKEVFEVAQLDLGQMGIVIYSATIKDLVDVPG  157 (428)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHhhhHHHHHHHhccHHHHHhhHHHHHHHHHHHhhhhhhhcceEEEEeEhhhhhcccc
Confidence            4322     23  456667788889999999999999999999999999999999999999999999999999998877 


Q ss_pred             -HHHHHH
Q 022958          189 -EFTSAI  194 (289)
Q Consensus       189 -~~~~ai  194 (289)
                       +|..++
T Consensus       158 ~~YlssL  164 (428)
T KOG2668|consen  158 HEYLSSL  164 (428)
T ss_pred             hHHHHHh
Confidence             688777

>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.71  E-value=8.2e-17  Score=126.17  Aligned_cols=115  Identities=14%  Similarity=0.215  Sum_probs=99.5

Q ss_pred             Eeeeeeeeeeee-cccccCCcEEEEEEEEEeecCCCCHHH----HHHHhC---ccccccccchHHHHHHHHHHhhcChhH
Q 022958           78 YDVRARPHLVES-TSGSRDLQMVKIGLRVLTRPVADKLPT----VYRALG---ENYNERVLPSIIHETLKAVVAQYNASQ  149 (289)
Q Consensus        78 ~~~~~~~~~~~~-~~~T~D~~~v~v~~~v~y~i~~~~~~~----~~~~~g---~~~~~~~l~~~~~~~lr~~~~~~~~~e  149 (289)
                      ++.+.+.++++. .+.|+|++++.+++++.|||  .++..    ++.+++   .+.....+.+.+++++|+++|+++++|
T Consensus         2 ~~lr~~~~~~~~q~v~TkD~~~v~vd~~~~~rV--~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~~ig~~tl~e   79 (128)
T cd03399           2 LSLTSMVLRVGSEAVITRDGVRVDVTAVFQVKV--GGTEEAIATAAERFLGKSEEEIEELVKEVLEGHLRAVVGTMTVEE   79 (128)
T ss_pred             ccccceeeeccccceecCCCcEEEEEEEEEEEe--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence            466777888876 48999999999999999996  44343    334443   255788899999999999999999999


Q ss_pred             HhhhHHHHHHHHHHHHHHHhhcCCeEEEEEEeeccccCHHHHHHH
Q 022958          150 LITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAI  194 (289)
Q Consensus       150 i~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai  194 (289)
                      ++++|++|.+++.+.++..+++||++|.++.|++|++|+.+.+++
T Consensus        80 l~~~R~~i~~~i~~~v~~~~~~~Gi~i~~v~I~~i~~~~~~~~~~  124 (128)
T cd03399          80 IYEDRDKFAEQVQEVVAPDLNKMGLELDSFTIKDITDTDGYLNNL  124 (128)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHCCCEEEEEeeEEecCCCCCHHHc
Confidence            999999999999999999999999999999999999999988765

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.

>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins

Probab=99.55  E-value=7.6e-14  Score=107.27  Aligned_cols=105  Identities=20%  Similarity=0.305  Sum_probs=92.3

Q ss_pred             cccccCCcEEEEEEEEEeecCCCCHHHHHHHhC-ccccccccchHHHHHHHHHHhhcChhHHhhhHHHHHHHHHHHHHHH
Q 022958           90 TSGSRDLQMVKIGLRVLTRPVADKLPTVYRALG-ENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTER  168 (289)
Q Consensus        90 ~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~g-~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~v~~~l~~~  168 (289)
                      .+.|+|++++++++++.|+|  +++..++.+++ ..+ ...+.+.+.+++|+.+++++++++.++|+++++.+++.+...
T Consensus        15 ~~~t~d~~~i~~~~~~~~~v--~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~i~~~v~~~l~~~   91 (121)
T cd02106          15 EVLTKDNVPVRVDAVVQYRV--VDPVKALYNVRDPED-EEALRQLAQSALRSVIGKMTLDELLEDRDEIAAEVREALQED   91 (121)
T ss_pred             eEEecCCCEEEEEEEEEEEE--eCHHHHHHhcCCccH-HHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHH
Confidence            47899999999999999996  44443333333 333 678999999999999999999999999999999999999999


Q ss_pred             hhcCCeEEEEEEeeccccCHHHHHHHHHH
Q 022958          169 AANFNIALDDVSITSLTFGKEFTSAIEAK  197 (289)
Q Consensus       169 l~~~Gi~v~~v~I~~i~~p~~~~~aie~~  197 (289)
                      +++||+++.++.|.++.+|+++.++++++
T Consensus        92 ~~~~Gi~i~~v~i~~i~~~~~~~~ai~~~  120 (121)
T cd02106          92 LDKYGIEVVDVRIKDIDPPEEVQEAMEDR  120 (121)
T ss_pred             HHhcCCEEEEEEEEecCCCHHHHHHHHhh
Confidence            99999999999999999999999999754

This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i

>PF13421 Band_7_1: SPFH domain-Band 7 family

Probab=99.41  E-value=1.2e-11  Score=104.49  Aligned_cols=161  Identities=16%  Similarity=0.170  Sum_probs=121.1

Q ss_pred             hcccEEEecCCeEEEEEccccCccceeeCCcceEE-------------------ccccCccEEEeeeeee-eeeee----
Q 022958           34 AANSLYNVEGGHRAIMFNRITGVKDKVYPEGTHLM-------------------VPWFERPVIYDVRARP-HLVES----   89 (289)
Q Consensus        34 ~~~~~~~V~~g~~gVv~~r~gg~~~~~~~pG~~~~-------------------~P~~~~v~~~~~~~~~-~~~~~----   89 (289)
                      -.+|-.+|++||.+|++ + .|....+++||.|-.                   .||-..|+.++++... ..+..    
T Consensus        12 ~~GS~LiV~egQ~Avfv-~-~G~i~d~~~pG~y~l~T~n~P~l~~l~~~~~Gg~spf~~eVyFvn~~~~~~~kwGT~~pi   89 (211)
T PF13421_consen   12 KNGSQLIVREGQCAVFV-N-DGKIADVFGPGRYTLDTDNIPILSTLKNWKFGGESPFKAEVYFVNTKEITNIKWGTPNPI   89 (211)
T ss_pred             cCCCEEEECCCCEEEEE-E-CCEEEEEecCceEEEecCCchHHHHHhhhccCCCCCceEEEEEEECeEecCCccCCCCCe
Confidence            35778899999999998 4 454444999999963                   2444456666666542 22221    


Q ss_pred             cccccCCcEEEEEEEEEeecCCCCHHHHHHHhC-------ccccccccchHHHHHHHHHHhh--cChhHHhhhHHHHHHH
Q 022958           90 TSGSRDLQMVKIGLRVLTRPVADKLPTVYRALG-------ENYNERVLPSIIHETLKAVVAQ--YNASQLITQRETVSRE  160 (289)
Q Consensus        90 ~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~g-------~~~~~~~l~~~~~~~lr~~~~~--~~~~ei~~~R~~i~~~  160 (289)
                      .....+...|.+.+.-.|.+++.|+..|+.++.       .+...+.+++.+.+.+-+.+++  +++.|+-++..+|++.
T Consensus        90 ~~~D~~~~~v~lra~G~ys~rI~Dp~~F~~~~vg~~~~~~~~~i~~~l~~~i~~~i~~~l~~~~~~~~~i~a~~~eis~~  169 (211)
T PF13421_consen   90 PYRDPEYGPVRLRAFGTYSFRIVDPVLFIRNLVGTQSEFTTEEINEQLRSEIVQAIADALAESKISILDIPAHLDEISEA  169 (211)
T ss_pred             eecCCCCCcEEEEEEEEEEEEEeCHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            122333446777777777777899999998864       2344556666666667777764  7899999999999999


Q ss_pred             HHHHHHHHhhcCCeEEEEEEeeccccCHHHHHHHHH
Q 022958          161 IRKILTERAANFNIALDDVSITSLTFGKEFTSAIEA  196 (289)
Q Consensus       161 v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie~  196 (289)
                      +++.|++.++.+|+++.++.|.+|.+|++.++++++
T Consensus       170 ~~~~l~~~~~~~Gi~l~~f~I~~i~~pee~~~~i~~  205 (211)
T PF13421_consen  170 LKEKLNPEFERYGIELVDFGIESISFPEEVQKAIDK  205 (211)
T ss_pred             HHHHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHH
Confidence            999999999999999999999999999999999953

>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]

Probab=98.86  E-value=9.6e-08  Score=81.76  Aligned_cols=159  Identities=13%  Similarity=0.111  Sum_probs=116.6

Q ss_pred             cccEEEecCCeEEEEEccccCccceeeC-CcceE-------------------EccccCccEEEeeeeee-eeeee----
Q 022958           35 ANSLYNVEGGHRAIMFNRITGVKDKVYP-EGTHL-------------------MVPWFERPVIYDVRARP-HLVES----   89 (289)
Q Consensus        35 ~~~~~~V~~g~~gVv~~r~gg~~~~~~~-pG~~~-------------------~~P~~~~v~~~~~~~~~-~~~~~----   89 (289)
                      -+|...|.|++.++.++  ||....+.. +|.|-                   ..|+-+.|+.++++.+. +.+..    
T Consensus        38 nGs~l~Vrp~qmamfvn--~G~I~dvf~e~G~y~v~~~t~P~L~tlk~~kfgf~sp~k~eVyfvntqe~~girwGT~qpi  115 (345)
T COG4260          38 NGSILHVRPNQMAMFVN--GGQIADVFAEAGYYKVTTQTLPSLFTLKRFKFGFESPFKQEVYFVNTQEIKGIRWGTPQPI  115 (345)
T ss_pred             cCcEEEEecCceEEEEc--CCEEEeeecCCceeEeeecccchhhhhhcceecCCCcccceEEEEecceecceecCCCCCe
Confidence            46778899999999986  676555554 77542                   24455677778887765 44432    


Q ss_pred             cccc-cCCcEEEEEEEEEeecCCCCHHHHHHHhC-------ccccccccchHHHHHHHHHHhhc--ChhHHhhhHHHHHH
Q 022958           90 TSGS-RDLQMVKIGLRVLTRPVADKLPTVYRALG-------ENYNERVLPSIIHETLKAVVAQY--NASQLITQRETVSR  159 (289)
Q Consensus        90 ~~~T-~D~~~v~v~~~v~y~i~~~~~~~~~~~~g-------~~~~~~~l~~~~~~~lr~~~~~~--~~~ei~~~R~~i~~  159 (289)
                      +... .++--+-+.+.-.|.+++.|+..+++.+.       .++.+..+-+.+..+|...+.++  ....+-.+.-++++
T Consensus       116 n~~dn~~~g~l~lRa~Gtys~kvtDpi~fi~~I~g~~dvy~v~di~~q~ls~~m~al~tai~q~G~~~~~ltan~~elsk  195 (345)
T COG4260         116 NYFDNFYNGELFLRAHGTYSIKVTDPILFIQQIPGNRDVYTVDDINQQYLSEFMGALATAINQSGVRFSFLTANQMELSK  195 (345)
T ss_pred             ecccccccceeEEeecceEEEEecCHHHHHHhccCCCceEEHHHHHHHHHHHHHHHHHHHHHhcCceehhhhhhHHHHHH
Confidence            2222 45555666666666666899998888764       23445556677777777777765  34444568899999


Q ss_pred             HHHHHHHHHhhcCCeEEEEEEeeccccCHHHHHHHH
Q 022958          160 EIRKILTERAANFNIALDDVSITSLTFGKEFTSAIE  195 (289)
Q Consensus       160 ~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie  195 (289)
                      .+++.|.+++..+|..|.+|+|.+|++|++.+..|+
T Consensus       196 ~m~e~Ld~q~~q~Gm~v~sfqvaSisypde~Q~lin  231 (345)
T COG4260         196 YMAEVLDEQWTQYGMAVDSFQVASISYPDESQALIN  231 (345)
T ss_pred             HHHHHHhHHHHhhCceEeeEEEEEecCcHHHHHHHH
Confidence            999999999999999999999999999999999995

>PTZ00491 major vault protein; Provisional

Probab=98.25  E-value=0.00022  Score=70.44  Aligned_cols=155  Identities=11%  Similarity=0.067  Sum_probs=98.7

Q ss_pred             EEecCCeEEEEEccccCccceeeCCcceEEccccCccEEEeeee---------eeeee---------eecccccCCcEEE
Q 022958           39 YNVEGGHRAIMFNRITGVKDKVYPEGTHLMVPWFERPVIYDVRA---------RPHLV---------ESTSGSRDLQMVK  100 (289)
Q Consensus        39 ~~V~~g~~gVv~~r~gg~~~~~~~pG~~~~~P~~~~v~~~~~~~---------~~~~~---------~~~~~T~D~~~v~  100 (289)
                      |.||-+...-+++.--+..+.+++|-+.+.-|- +.+..++++-         +.+.+         ...+-|+|...+.
T Consensus       465 ~~vphn~avqvydyk~~~~Rvv~GP~~v~L~pd-E~ftvlsLSgg~PK~~n~i~~l~l~lGPdf~tD~i~vET~DhArL~  543 (850)
T PTZ00491        465 YKVPHNAAVQLYDYKTKKSRVVFGPDLVMLEPD-EEFTVLSLSGGKPKVPNQIHSLHLFLGPDFMTDVIHVETSDHARLA  543 (850)
T ss_pred             EEcCCCcEEEEEEcccCceEEEECCceEEecCC-CceEEEEecCCCCCCcchhhhhhhhhCCccceeEEEEEEcccceEE
Confidence            456666555454322244566889999998887 5666665532         11111         0136799999999


Q ss_pred             EEEEEEeecC--CCCHHHHHHHhCccccccccchHHHHHHHHHHhhcChhHHhhhHHH-HHHHHHHHH------HH--Hh
Q 022958          101 IGLRVLTRPV--ADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRET-VSREIRKIL------TE--RA  169 (289)
Q Consensus       101 v~~~v~y~i~--~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~-i~~~v~~~l------~~--~l  169 (289)
                      ++.+..|+++  .+|+.+.-.-|...++-...-..+.+-+|..+++.+.++++.+-.. |.+.+.-..      ++  .|
T Consensus       544 l~LsYnW~F~v~~~d~~~~~k~Fsv~DFvGd~Ck~iaSrIR~aVA~~~Fd~FHknsa~iiR~aVFg~~~e~~~~r~~l~F  623 (850)
T PTZ00491        544 LQLSYNWYFDVTDGNPEDAQKCFSVPDFVGDACKTIASRVRAAVASEPFDEFHKNSAKIIRQAVFGSNDETGEVRDSLRF  623 (850)
T ss_pred             EEEEEEEEEecCCCChhhHhheeccCchHHHHHHHHHHHHHHHHhcCCHHHHhccHHHHHHHHhccCcCCCCccccceEE
Confidence            9999998865  3444322222234333334678899999999999999999975433 333333311      12  23


Q ss_pred             hcCCeEEEEEEeeccccCHH-HHHHH
Q 022958          170 ANFNIALDDVSITSLTFGKE-FTSAI  194 (289)
Q Consensus       170 ~~~Gi~v~~v~I~~i~~p~~-~~~ai  194 (289)
                      ...|+.|.+|.|+++.|-++ .++++
T Consensus       624 ~~N~lvit~VDvqsvEpvD~~tr~~L  649 (850)
T PTZ00491        624 PANNLVITNVDVQSVEPVDERTRDSL  649 (850)
T ss_pred             ccCCeEEEEEeeeeeeecCHHHHHHH
Confidence            57799999999999998554 55555

>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365

Probab=97.74  E-value=0.00045  Score=59.43  Aligned_cols=175  Identities=15%  Similarity=0.280  Sum_probs=107.3

Q ss_pred             Eeeeeeeeeeee-cccccCCcEEEEEEEEEeecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcChhHHhhhHHH
Q 022958           78 YDVRARPHLVES-TSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRET  156 (289)
Q Consensus        78 ~~~~~~~~~~~~-~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~  156 (289)
                      .++.+..++.|. ....+||..+.+.+.++.|   .+...+.   |....++++.+.=+..+-.+-+.-+-.+++++-+.
T Consensus       120 ~SVnPkVI~~P~i~aVAkdGIql~~kArVTVR---aNi~rLV---GGAgEeTIiARVGEgIVttiGSa~~hk~VLEnPd~  193 (316)
T PF12127_consen  120 TSVNPKVIDTPTIAAVAKDGIQLKVKARVTVR---ANIDRLV---GGAGEETIIARVGEGIVTTIGSAESHKEVLENPDS  193 (316)
T ss_pred             cccCCeeecCcchhhhhcCCeEEEEEEEEEEE---ecHHHhc---cCCCcHHHHHHHccceeeeeccchhHHHHhcCHHH
Confidence            334444444443 3668999999999999999   4444444   77777777777777777777778889999999999


Q ss_pred             HHHHHHHHHHHHh-hcCCeEEEEEEeeccccCHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH--h--
Q 022958          157 VSREIRKILTERA-ANFNIALDDVSITSLTFGKEFTSAIEA------KQVAAQEAERAKYIVEKAEQDKRSAIIR--A--  225 (289)
Q Consensus       157 i~~~v~~~l~~~l-~~~Gi~v~~v~I~~i~~p~~~~~aie~------~~~a~q~~~~a~~~i~~A~aea~~~~~~--A--  225 (289)
                      |++.+.+.   -| .+.-++|.++.|-|++.-+++-..++.      +.+|+..+|.-+......|+|-.+++.+  |  
T Consensus       194 ISk~VL~k---gLDagTAFeIlSIDIaDidVG~NIGA~Lq~dQAeADk~iAqAkAEeRRA~AvA~EQEm~A~vqe~rAkv  270 (316)
T PF12127_consen  194 ISKTVLEK---GLDAGTAFEILSIDIADIDVGENIGAKLQTDQAEADKRIAQAKAEERRAMAVAREQEMKAKVQEMRAKV  270 (316)
T ss_pred             HHHHHHhh---CCCcCceeEEEEeeeeccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence            99877653   44 345699999999999999988766632      2222222222221111222222222211  1  


Q ss_pred             -hhHHHHHHHHHHHhhcC----hhhHHHHHHHHHHHHHHHh
Q 022958          226 -QGEATSAQLIGQAIANN----PAFITLRKIEAAREIAQTI  261 (289)
Q Consensus       226 -~aeaea~~~~~~a~~~~----p~~~~~~~~e~~~~i~~~~  261 (289)
                       ++|++--+.+++++++-    -+|+.++-+++-.+|-+++
T Consensus       271 VeAeaevP~A~aeAfr~G~lGvmDYy~~~Ni~aDT~MR~si  311 (316)
T PF12127_consen  271 VEAEAEVPLAMAEAFRSGNLGVMDYYNLKNIQADTEMRESI  311 (316)
T ss_pred             eehhhhchHHHHHHHHcCCCcchhhhhhhcccccchHHHhc
Confidence             14555556677777532    2345555555555554444

Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.

>PRK13665 hypothetical protein; Provisional

Probab=97.44  E-value=0.002  Score=55.21  Aligned_cols=109  Identities=12%  Similarity=0.205  Sum_probs=81.3

Q ss_pred             Eeeeeeeeeeee-cccccCCcEEEEEEEEEeecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcChhHHhhhHHH
Q 022958           78 YDVRARPHLVES-TSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRET  156 (289)
Q Consensus        78 ~~~~~~~~~~~~-~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~  156 (289)
                      .++.++.++.|. ....+||..+.+.+.++.|   .+...+.   |....++++.+.=+..+-.+-+.-+-.+++++.+.
T Consensus       125 ~SVnPkVI~~P~i~aVAkdGIql~~kARVTVR---aNi~rLV---GGAgEeTIiARVGEgIVttIGSa~~hk~VLEnPd~  198 (316)
T PRK13665        125 MSVNPKVIETPFIAAVAKDGIEVKAKARVTVR---ANIDRLV---GGAGEETIIARVGEGIVSTIGSSESHKEVLENPDS  198 (316)
T ss_pred             cccCCeeecCCcchhhcccCeEEEEEEEEEee---hhHHHHh---CCCcceeeEeeecCceeecccCcchHHHHhcCHHH
Confidence            334444444443 3668999999999999998   4444444   77777777777777777777778889999999999


Q ss_pred             HHHHHHHHHHHHhh-cCCeEEEEEEeeccccCHHHHHHHH
Q 022958          157 VSREIRKILTERAA-NFNIALDDVSITSLTFGKEFTSAIE  195 (289)
Q Consensus       157 i~~~v~~~l~~~l~-~~Gi~v~~v~I~~i~~p~~~~~aie  195 (289)
                      |++.+.+   .-|+ +.-++|.++.|-|++..+++-..++
T Consensus       199 ISk~VL~---kGLDagTAFeIlSIDIADvdVG~NIGA~Lq  235 (316)
T PRK13665        199 ISKTVLS---KGLDAGTAFEILSIDIADVDVGKNIGAKLQ  235 (316)
T ss_pred             HHHHHHh---ccCCcCceeEEEEEeeeccccchhhchhhh
Confidence            9965543   4453 4569999999999999998876663

>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]

Probab=97.13  E-value=0.026  Score=45.47  Aligned_cols=80  Identities=16%  Similarity=0.194  Sum_probs=60.6

Q ss_pred             CcEEEEEEEEEeecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcChhHHhh--hHHHHHHHHHHHHHHHhhcCC
Q 022958           96 LQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLIT--QRETVSREIRKILTERAANFN  173 (289)
Q Consensus        96 ~~~v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~G  173 (289)
                      +-...+.+.+.|++.-+..   ...+..      =.+.+++.+...+++.+.+|+.+  .++++.+++++.+++.+..-+
T Consensus        76 ~~~~~v~i~i~l~~~n~~~---~~el~~------~~p~vrd~li~lfsskt~~eL~t~~Gke~Lk~ei~~~in~~L~~g~  146 (159)
T COG1580          76 PKDRYVKIAITLEVANKAL---LEELEE------KKPEVRDALLMLFSSKTAAELSTPEGKEKLKAEIKDRINTILKEGQ  146 (159)
T ss_pred             CCcEEEEEEEEEeeCCHHH---HHHHHH------hhHHHHHHHHHHHHhCCHHHhcCchhHHHHHHHHHHHHHHHHhcCC
Confidence            4566778888898533322   322211      25789999999999999999996  899999999999999998755


Q ss_pred             eEEEEEEeeccc
Q 022958          174 IALDDVSITSLT  185 (289)
Q Consensus       174 i~v~~v~I~~i~  185 (289)
                       .|.+|...++.
T Consensus       147 -~V~dV~fT~fi  157 (159)
T COG1580         147 -VVKDVLFTNFI  157 (159)
T ss_pred             -eeEEEeeehhh
Confidence             77777776643

>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed

Probab=95.49  E-value=0.81  Score=37.24  Aligned_cols=52  Identities=10%  Similarity=0.109  Sum_probs=42.6

Q ss_pred             chHHHHHHHHHHhhcChhHHhh--hHHHHHHHHHHHHHHHhhcCCeEEEEEEeecc
Q 022958          131 PSIIHETLKAVVAQYNASQLIT--QRETVSREIRKILTERAANFNIALDDVSITSL  184 (289)
Q Consensus       131 ~~~~~~~lr~~~~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i  184 (289)
                      .+.+++.+-..+++.+.+|+.+  .+..+.+++.+.++..+..-  .|.+|.++++
T Consensus       110 ~p~Ird~i~~~Ls~~~~~~L~~~~Gk~~Lr~ei~~~in~~l~~~--~V~~VlFt~F  163 (166)
T PRK12785        110 MPRVTDAFQTYLRELRPSDLNGSAGLFRLKEELLRRVNVALAPA--QVNAVLFKEV  163 (166)
T ss_pred             chHHHHHHHHHHHhCCHHHhcChHHHHHHHHHHHHHHHhhcCCC--ceeEEEEEee
Confidence            4778888899999999999985  79999999999999988753  3666666653

>COG4864 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.57  E-value=0.74  Score=38.79  Aligned_cols=94  Identities=12%  Similarity=0.239  Sum_probs=63.8

Q ss_pred             cccCCcEEEEEEEEEeecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHh-h
Q 022958           92 GSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERA-A  170 (289)
Q Consensus        92 ~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~v~~~l~~~l-~  170 (289)
                      ..-||..|.....+..|   .+...+   .|....++.+.+.=+..+..+-++..-.+++++.+.|++.+..   .-| .
T Consensus       139 vam~gievkakaritvr---ani~rl---vggageetviarvgegivstigss~~h~~vlenpd~isktvl~---kgld~  209 (328)
T COG4864         139 VAMNGIEVKAKARITVR---ANIERL---VGGAGEETVIARVGEGIVSTIGSSDEHTKVLENPDSISKTVLE---KGLDS  209 (328)
T ss_pred             eeccceEEEEEEEEEeh---hhHHHH---hCCCCchhhhhhhccceeeccCCCcchhhHhcCccHHHHHHHH---ccCCC
Confidence            35678877777777776   233333   3666666666555555555555667788889999888876654   233 2


Q ss_pred             cCCeEEEEEEeeccccCHHHHHHH
Q 022958          171 NFNIALDDVSITSLTFGKEFTSAI  194 (289)
Q Consensus       171 ~~Gi~v~~v~I~~i~~p~~~~~ai  194 (289)
                      ...+++.++.|-|++..+++-.-+
T Consensus       210 gtafeilsidiadvdigkniga~l  233 (328)
T COG4864         210 GTAFEILSIDIADVDIGKNIGAKL  233 (328)
T ss_pred             CceeEEEEeeeecccccccccccc
Confidence            445899999999999988776544

>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed

Probab=93.55  E-value=3.2  Score=34.14  Aligned_cols=77  Identities=13%  Similarity=0.207  Sum_probs=53.6

Q ss_pred             CCcEEEEEEEEEeecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHhhcCCe
Q 022958           95 DLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNI  174 (289)
Q Consensus        95 D~~~v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi  174 (289)
                      ++....+.+++.|.  .++.. +..++..      =.+.+++.+...+++.+.+|+. ++.++.+++.+.+|..|.+-. 
T Consensus        99 ~~~r~~vki~l~~e--~~d~~-l~~EL~~------r~pqIRD~Ii~~LssKt~~eL~-Gk~~LKeEI~~rIN~iL~~Gk-  167 (181)
T PRK06654         99 PPKTFVVKLALGYA--ENNKN-ILNELGR------RKVRLKDIIREYFSQKTGQELK-NESQIKAEIKARINSILRNGE-  167 (181)
T ss_pred             CCceEEEEEEEEEE--cCCHH-HHHHHHh------ccHHHHHHHHHHHHhCCHHHHc-CHHHHHHHHHHHHHHhcCCCc-
Confidence            33444567777777  34433 3332211      2577899999999999999999 889999999999998887532 


Q ss_pred             EEEEEEeec
Q 022958          175 ALDDVSITS  183 (289)
Q Consensus       175 ~v~~v~I~~  183 (289)
                       |.+|.+++
T Consensus       168 -V~~VYFTe  175 (181)
T PRK06654        168 -IKDIAFTQ  175 (181)
T ss_pred             -eEEEEEEE
Confidence             44444443

>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins

Probab=93.36  E-value=0.72  Score=40.38  Aligned_cols=102  Identities=11%  Similarity=0.115  Sum_probs=61.5

Q ss_pred             HHHHHHHHhhcCCeEEE--EEEeeccccCH-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 022958          161 IRKILTERAANFNIALD--DVSITSLTFGK-EFTSAIEAKQVAAQEA-ERAKYIVEKAEQDKRSAIIRAQGEATSAQLIG  236 (289)
Q Consensus       161 v~~~l~~~l~~~Gi~v~--~v~I~~i~~p~-~~~~aie~~~~a~q~~-~~a~~~i~~A~aea~~~~~~A~aeaea~~~~~  236 (289)
                      +.+.+.+.+... +.-.  .+.|.++.+-+ ..-..+.+...+.+.+ ++++..+..|++++++.+.+|+|+|++..+.+
T Consensus       143 i~~~i~~~l~~~-~~~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A  221 (266)
T cd03404         143 IAQDVRELLQAI-LDAYKAGIEIVGVNLQDADPPEEVQDAFDDVNKARQDRERLINEAEAYANEVVPKARGEAARIIQEA  221 (266)
T ss_pred             HHHHHHHHHHHH-hhccCCCeEEEEEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence            444454455432 2222  78888888754 3445565443333333 33455566777777888899999999999999


Q ss_pred             HHhhcChhhHHHHHHHHHHHHHHHhcC
Q 022958          237 QAIANNPAFITLRKIEAAREIAQTIAH  263 (289)
Q Consensus       237 ~a~~~~p~~~~~~~~e~~~~i~~~~~~  263 (289)
                      ++.+.....-..-..+....+++++.+
T Consensus       222 ~a~~~~~~~~ae~~a~~~~~~~~a~~~  248 (266)
T cd03404         222 EAYKEEVIAEAQGEAARFESLLAEYKK  248 (266)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence            888655555444444555555555433

This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins

Probab=93.34  E-value=0.57  Score=40.35  Aligned_cols=80  Identities=14%  Similarity=0.210  Sum_probs=47.2

Q ss_pred             HHHHHHHHHhhcCCeEEEEEEeeccccCH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022958          160 EIRKILTERAANFNIALDDVSITSLTFGK-EFTSAIEAKQVAAQEAERAK-YIVEKAEQDKRSAIIRAQGEATSAQLIGQ  237 (289)
Q Consensus       160 ~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~-~~~~aie~~~~a~q~~~~a~-~~i~~A~aea~~~~~~A~aeaea~~~~~~  237 (289)
                      .+.+.+.+.+... +.=..+.|.++.+.+ .+-+.+.+.......+++.+ .....|++++++..++|++++++..+.++
T Consensus       120 ~i~~~i~~~l~~~-l~~~Gi~i~~v~i~~i~~p~~i~~ai~~~~~ae~~~~a~~~~ae~~~~a~~~~aea~~~~~~~~Ae  198 (242)
T cd03405         120 ELMEEIRRAVAEE-AKELGIEVVDVRIKRIDLPEEVSESVYRRMRAERERIAAEFRAEGEEEAERIRADADRERTVILAE  198 (242)
T ss_pred             HHHHHHHHHHHHH-HHccCcEEEEEEEEeccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555432 333567788877643 23455544444445555543 45556777777777777777777777776


Q ss_pred             Hhh
Q 022958          238 AIA  240 (289)
Q Consensus       238 a~~  240 (289)
                      +.+
T Consensus       199 a~a  201 (242)
T cd03405         199 AYR  201 (242)
T ss_pred             HHH
Confidence            653

This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain []

Probab=92.16  E-value=0.64  Score=35.16  Aligned_cols=96  Identities=9%  Similarity=0.039  Sum_probs=61.2

Q ss_pred             ccccCCcEEEEEEEEEeecCC--CCHHHHHHHhCccccccccchHHHHHHHHHHhhcChhHHhhhHHHHHH-HH-----H
Q 022958           91 SGSRDLQMVKIGLRVLTRPVA--DKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSR-EI-----R  162 (289)
Q Consensus        91 ~~T~D~~~v~v~~~v~y~i~~--~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~-~v-----~  162 (289)
                      +.|+|...+.+..+..|..+.  .++.+.-.-+...++-...-..+.+-+|..+++.+.+++..+-..+-. .+     .
T Consensus        11 VET~DhArL~L~LsYnw~F~v~~~~~~~~~k~F~VpDFVGd~Ck~iaSRIR~aVa~~~Fd~FHknSa~iiR~aVFg~~~~   90 (118)
T PF11978_consen   11 VETADHARLQLQLSYNWHFDVDRKDPEDAAKLFSVPDFVGDACKAIASRIRGAVASVTFDDFHKNSARIIRQAVFGFDEN   90 (118)
T ss_dssp             EE-TT-EEEEEEEEEEEEE--TTTHHHHHHHTTSSTTHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHSTS---
T ss_pred             EeecccceeeEEEEEEEEEecCCCChhHHHHhcCCcchHHHHHHHHHHHHHHHHhcCcHHHHcccHHHHHHHHhcCCCCC
Confidence            569999999999888888655  333333333443333334668889999999999999999975443322 21     1


Q ss_pred             HHHHHH--hhcCCeEEEEEEeecccc
Q 022958          163 KILTER--AANFNIALDDVSITSLTF  186 (289)
Q Consensus       163 ~~l~~~--l~~~Gi~v~~v~I~~i~~  186 (289)
                      ..+++.  +...|+.|.++.|+++.|
T Consensus        91 ~~~r~~~~F~~N~LvIt~vDvqsvEp  116 (118)
T PF11978_consen   91 GEVRDGLRFPANNLVITSVDVQSVEP  116 (118)
T ss_dssp             E--SS-EEETTTTEEEEEEEEEEEEE
T ss_pred             CCccceeEEcCCCeEEEEEeeeEecc
Confidence            122222  356799999999999876

This family includes two bacterial proteins A6FXE2 from SWISSPROT and A1ZGE7 from SWISSPROT. This suggests that some bacteria may possess vault particles. ; PDB: 2ZUO_G 2QZV_B 2ZV5_c 2ZV4_Y.

>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed

Probab=91.85  E-value=4.5  Score=32.71  Aligned_cols=54  Identities=19%  Similarity=0.272  Sum_probs=43.3

Q ss_pred             chHHHHHHHHHHhhcChhHHhh--hHHHHHHHHHHHHHHHhhcC--CeEEEEEEeecc
Q 022958          131 PSIIHETLKAVVAQYNASQLIT--QRETVSREIRKILTERAANF--NIALDDVSITSL  184 (289)
Q Consensus       131 ~~~~~~~lr~~~~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~--Gi~v~~v~I~~i  184 (289)
                      .+.+++.+-..+++.+.+|+.+  +++++.+++.+.++..+..-  .-.|.+|.++++
T Consensus       102 ~p~IRd~ii~~Ls~k~~~~L~~~eGk~~Lk~ei~~~in~~l~~~~~~~~V~~VlFt~f  159 (162)
T PRK07021        102 LPEVRSRLLLLLSRKHAAELATEEGKQKLAAEIKQTLSQPLVPGQPPQVVTDVLFTAF  159 (162)
T ss_pred             CHHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHhccCCCCceeEEeeeec
Confidence            4678889999999999999985  89999999999999988643  235667766653

>PRK11029 FtsH protease regulator HflC; Provisional

Probab=91.66  E-value=1.4  Score=40.02  Aligned_cols=84  Identities=12%  Similarity=0.181  Sum_probs=52.8

Q ss_pred             EEEeeccccCH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcChhhHHHHHHHHHH
Q 022958          178 DVSITSLTFGK-EFTSAIEAKQVAAQEAERAK-YIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFITLRKIEAAR  255 (289)
Q Consensus       178 ~v~I~~i~~p~-~~~~aie~~~~a~q~~~~a~-~~i~~A~aea~~~~~~A~aeaea~~~~~~a~~~~p~~~~~~~~e~~~  255 (289)
                      .+.|.++.+-+ .+-..+.+....++.++|.+ ....+|+++++++.++|+|+.++.++.++++++.-.+-..-..++.+
T Consensus       202 GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~~a~~~~aege~~a~~~~a~A~~e~~~~~AeA~~~a~i~~aegeA~a~~  281 (334)
T PRK11029        202 GIEVVDVRIKQINLPTEVSDAIYNRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTLAEAERQGRIMRGEGDAEAAK  281 (334)
T ss_pred             CcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            47777777744 34556655555566666554 34778889999999999888888888888764322221123344444


Q ss_pred             HHHHHh
Q 022958          256 EIAQTI  261 (289)
Q Consensus       256 ~i~~~~  261 (289)
                      .+++++
T Consensus       282 ~~~~a~  287 (334)
T PRK11029        282 LFADAF  287 (334)
T ss_pred             HHHHHH
Confidence            444444

>TIGR01932 hflC HflC protein

Probab=91.28  E-value=1.8  Score=39.15  Aligned_cols=56  Identities=11%  Similarity=0.133  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHhcC
Q 022958          208 KYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFITLRKIEAAREIAQTIAH  263 (289)
Q Consensus       208 ~~~i~~A~aea~~~~~~A~aeaea~~~~~~a~~~~p~~~~~~~~e~~~~i~~~~~~  263 (289)
                      .....+++++++++.++|+|++++.+++++|+++.-.+-..-..++.+.+++++++
T Consensus       224 ~a~~~r~ege~~a~~i~a~A~~e~~~~~aeA~a~a~~~~Aegea~a~~~~~~a~~~  279 (317)
T TIGR01932       224 IARMHRSQGEEKAEEILGKAEYEVRKILSEAYRTARIIKGEGDAEAAKIYSDAYGK  279 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcc
Confidence            44566778888888888999999888888886432211112334444455444433

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)

>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis []

Probab=87.96  E-value=8.3  Score=27.94  Aligned_cols=52  Identities=15%  Similarity=0.228  Sum_probs=42.9

Q ss_pred             chHHHHHHHHHHhhcChhHHhh--hHHHHHHHHHHHHHHHhhcCCeEEEEEEeecc
Q 022958          131 PSIIHETLKAVVAQYNASQLIT--QRETVSREIRKILTERAANFNIALDDVSITSL  184 (289)
Q Consensus       131 ~~~~~~~lr~~~~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i  184 (289)
                      .+.+++.+...+++++.+|+.+  +++.+.+++.+.++..+.+-  .|.+|.+.++
T Consensus        43 ~~~ird~ii~~l~~~~~~~l~~~~g~~~Lk~~l~~~in~~l~~~--~V~~V~ft~f   96 (99)
T PF03748_consen   43 MPRIRDAIISYLSSKTAEDLSGPEGKERLKDELKDRINKILGKG--KVKDVYFTDF   96 (99)
T ss_pred             cHHHHHHHHHHHHcCCHHHhcChhhHHHHHHHHHHHHHHhhccC--cEEEEEEEEE
Confidence            5679999999999999999994  89999999999999998543  2666666653

FliL is a cytoplasmic membrane protein associated with the basal body [].; GO: 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009425 bacterial-type flagellum basal body

>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed

Probab=87.08  E-value=16  Score=30.21  Aligned_cols=51  Identities=18%  Similarity=0.234  Sum_probs=42.3

Q ss_pred             chHHHHHHHHHHhhcChhHHhh--hHHHHHHHHHHHHHHHhhcCCeEEEEEEeec
Q 022958          131 PSIIHETLKAVVAQYNASQLIT--QRETVSREIRKILTERAANFNIALDDVSITS  183 (289)
Q Consensus       131 ~~~~~~~lr~~~~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~  183 (289)
                      .+.+++.+-..+++.+.+|+.+  .++.+.+++.+.++..+.+-  .|.+|.+++
T Consensus       126 ~p~IRD~ii~~Ls~kt~~dL~t~~Gk~~Lk~ei~~~iN~~L~~g--~V~~VyFT~  178 (182)
T PRK08455        126 DPVIRDIIIRILSSKTVEEVSTNKGKERLKDEIVGKLNEFLIDG--FIKNVFFTD  178 (182)
T ss_pred             hhHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHhccC--ceeEEEeEe
Confidence            5678999999999999999995  79999999999999999653  455665554

>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=85.99  E-value=4.9  Score=35.15  Aligned_cols=29  Identities=34%  Similarity=0.416  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Q 022958          211 VEKAEQDKRSAIIRAQGEATSAQLIGQAI  239 (289)
Q Consensus       211 i~~A~aea~~~~~~A~aeaea~~~~~~a~  239 (289)
                      +.+|++++.+.+.+|+|++++..+.++++
T Consensus       163 ~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~  191 (262)
T cd03407         163 VHKAEAEKIKDIKAAEADAEAKRLQGVGA  191 (262)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            33444444444444555554444444443

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>TIGR01933 hflK HflK protein

Probab=85.82  E-value=5.7  Score=34.60  Aligned_cols=62  Identities=13%  Similarity=0.174  Sum_probs=25.3

Q ss_pred             EEEeeccccCH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Q 022958          178 DVSITSLTFGK-EFTSAIEAKQVAAQEAERA-KYIVEKAEQDKRSAIIRAQGEATSAQLIGQAI  239 (289)
Q Consensus       178 ~v~I~~i~~p~-~~~~aie~~~~a~q~~~~a-~~~i~~A~aea~~~~~~A~aeaea~~~~~~a~  239 (289)
                      .+.|.++.+-. ..-+.+.+...+.+.+++. +..+.+|+++++..+.+|+++|++..+.++++
T Consensus       134 GI~V~~v~I~~i~~p~~v~~a~~~~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~  197 (261)
T TIGR01933       134 GITVTDVNFQSARPPEEVKEAFDDVIIAREDEERYINEAEAYANEVVPKARGDAQRIIEEARGY  197 (261)
T ss_pred             CcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666665544 2233333222222222222 22233344444444444555555444444443

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)

>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed

Probab=83.86  E-value=14  Score=29.09  Aligned_cols=52  Identities=15%  Similarity=0.240  Sum_probs=43.0

Q ss_pred             chHHHHHHHHHHhhcChhHHhh--hHHHHHHHHHHHHHHHhhcCCeEEEEEEeecc
Q 022958          131 PSIIHETLKAVVAQYNASQLIT--QRETVSREIRKILTERAANFNIALDDVSITSL  184 (289)
Q Consensus       131 ~~~~~~~lr~~~~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i  184 (289)
                      .+.+++.+-..+++.+.+|+.+  +++.+.+++.+.++..+.+ | .|.+|.+++.
T Consensus        86 ~p~Ird~ii~~L~~~~~~~l~~~~G~~~Lr~el~~~in~~l~~-g-~V~~Vyft~f  139 (142)
T PRK07718         86 DFQVKNIIIEELADMNAEDFKGKKGLEALKEQLKEKINNLMQE-G-KVEKVYITSF  139 (142)
T ss_pred             ChhhHHHHHHHHHcCCHHHhcChhHHHHHHHHHHHHHHHhhcc-C-ceEEEEEEee
Confidence            4678899999999999999985  8999999999999988865 4 4666666553

>PRK05697 flagellar basal body-associated protein FliL-like protein; Validated

Probab=81.73  E-value=23  Score=27.76  Aligned_cols=54  Identities=19%  Similarity=0.222  Sum_probs=43.7

Q ss_pred             chHHHHHHHHHHhhcChhHHhh--hHHHHHHHHHHHHHHHhhcC-C-eEEEEEEeecc
Q 022958          131 PSIIHETLKAVVAQYNASQLIT--QRETVSREIRKILTERAANF-N-IALDDVSITSL  184 (289)
Q Consensus       131 ~~~~~~~lr~~~~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~-G-i~v~~v~I~~i  184 (289)
                      .+.+++.+-..+++.+.+|+.+  +|+++.+++.+.++..+..- | -.|.+|.+++.
T Consensus        77 ~P~IRd~ii~lLs~~t~~eL~t~eGke~Lr~eil~~in~~L~~~~g~~~V~~VlFT~F  134 (137)
T PRK05697         77 DPLIRNALVELLGQQTEDKVKSLTGREEIRQECLKQVNELLEQETGKPLVVDLLFTKY  134 (137)
T ss_pred             CHHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHHhhccCCCceeEEeeeee
Confidence            4789999999999999999985  89999999999999998632 2 24666666553

>PLN03086 PRLI-interacting factor K; Provisional

Probab=81.59  E-value=2  Score=41.67  Aligned_cols=45  Identities=13%  Similarity=0.185  Sum_probs=24.1

Q ss_pred             HhhhHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 022958          224 RAQGEATSAQLIGQAIANNPAFITLRKIEAAREIAQTIAHSANKVFLNSD  273 (289)
Q Consensus       224 ~A~aeaea~~~~~~a~~~~p~~~~~~~~e~~~~i~~~~~~~~~~i~l~~~  273 (289)
                      .++++.+|...+.+.+..+..+.-.+.+++...     .+++++|+||++
T Consensus        55 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~GdKI~LPpS   99 (567)
T PLN03086         55 AIEAQIKADQQMQESLQAGRGIVFSRIFEAVSF-----QGNGDKIKLPPS   99 (567)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCeEEEEEeecccc-----CCCCCeEEcCHH
Confidence            333444444445555543433333345554444     356789999987

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	289
3bk6_A	188	PH stomatin; archaea, trimer, coiled- coil, flotil	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
1win_A	143	Flotillin 2; BAND 7 domain, structural genomics, r	2e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	7e-04

>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} Length = 188

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 28/125 (22%), Positives = 66/125 (52%), Gaps = 17/125 (13%)

Query: 137 TLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEA 196
           TL++V+ Q +  +L+++R+ ++ ++++I+ E    + I +  V I  +        A+  
Sbjct: 65  TLRSVIGQAHLDELLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAM-- 122

Query: 197 KQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQA---IANNPAFITLRKIEA 253
               A++AE        AE+++R+ I  A+ E  +A+ + +A   I+ +P  + LR ++ 
Sbjct: 123 ----ARQAE--------AERERRARITLAEAERQAAEKLREAAEIISEHPMALQLRTLQT 170

Query: 254 AREIA 258
             ++A
Sbjct: 171 ISDVA 175

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 9e-05
 Identities = 53/301 (17%), Positives = 99/301 (32%), Gaps = 100/301 (33%)

Query: 2   NFNNVKVPKVPGGGAASALIKVGIIGGIGLYAAANSLYNVEGGHRAIMFNRITGVKDKVY 61
           N+ +V   K+      + +I+  +          N L   E  +R  MF+R++     V+
Sbjct: 346 NWKHVNCDKL------TTIIESSL----------NVLEPAE--YRK-MFDRLS-----VF 381

Query: 62  PEGTH-----LMVPWFERPVIYDVR------ARPHLV-----ESTSGSRDLQMVKIGLRV 105
           P   H     L + WF+     DV        +  LV     EST     + +       
Sbjct: 382 PPSAHIPTILLSLIWFDVIK-SDVMVVVNKLHKYSLVEKQPKESTISIPSIYL------- 433

Query: 106 LTRPVADKLPTVYRALGENYN-ERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKI 164
             +   +    ++R++ ++YN  +   S   + +   + QY  S +          ++ I
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDS--DDLIPPYLDQYFYSHI-------GHHLKNI 484

Query: 165 -LTERAANF-NIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERA--------------- 207
              ER   F  + LD        F       +E K      A  A               
Sbjct: 485 EHPERMTLFRMVFLD------FRF-------LEQKIRHDSTAWNASGSILNTLQQLKFYK 531

Query: 208 KYIVEKAEQDKR--SAIIR--AQGEAT-----SAQLIGQAIANNPAFITLRKIEAAREIA 258
            YI +   + +R  +AI+    + E          L+  A+      I     EA +++ 
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF---EEAHKQVQ 588

Query: 259 Q 259
           +
Sbjct: 589 R 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 3e-04
 Identities = 26/229 (11%), Positives = 65/229 (28%), Gaps = 62/229 (27%)

Query: 86  LVESTSGSRDLQM--------VKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHET 137
           +      S  +Q         + +        V + L  +   +  N+  R   S     
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS----- 220

Query: 138 LKAVVAQYNASQLITQRETVSREIRKILTERAANFNIAL---DDVS-------------- 180
                     S +  +  ++  E+R++L  +   +   L    +V               
Sbjct: 221 ----------SNIKLRIHSIQAELRRLLKSK--PYENCLLVLLNVQNAKAWNAFNLSCKI 268

Query: 181 -ITS--------LTFGKEFTSAIEAKQVAAQEAER----AKYIVEKAEQDKRSAIIRAQG 227
            +T+        L+       +++   +     E      KY+  + +   R  +     
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL---TT 325

Query: 228 EATSAQLIGQAIANNPA-FITLRKIEAAREIAQTIAHSANKVFLNSDDL 275
                 +I ++I +  A +   + +   + +   I  S N   L   + 
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDK-LTTIIESSLNV--LEPAEY 371

>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1 Length = 143

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 9/78 (11%), Positives = 32/78 (41%)

Query: 127 ERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTF 186
           + V+   +   L++++      Q+   R+  ++ +R++         I +   +I  +  
Sbjct: 65  KNVVLQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYD 124

Query: 187 GKEFTSAIEAKQVAAQEA 204
             ++ S++   Q +   +
Sbjct: 125 KVDYLSSLGKTQTSGPSS 142

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 39.0 bits (90), Expect = 7e-04
 Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 9/85 (10%)

Query: 195 EAKQVAAQEAERAKYIVE-KAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFITLRKIEA 253
           +A ++  QE E    I + + EQ KR   + A  +    +   +A  +   +   +  + 
Sbjct: 76  QADRLT-QEPES---IRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQV 131

Query: 254 AREIAQTIAHSANKVFLNS--DDLL 276
            +         A+K F      D++
Sbjct: 132 EKNKINNRI--ADKAFYQQPDADII 154

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	289
3bk6_A	188	PH stomatin; archaea, trimer, coiled- coil, flotil	99.96
4fvg_A	133	Stomatin; mixed alpha-beta fold, membrane scaffold	99.9
1win_A	143	Flotillin 2; BAND 7 domain, structural genomics, r	99.81
2rpb_A	113	Hypothetical membrane protein; SPFH domain; NMR {P	99.71
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	98.47

>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}

Probab=99.96  E-value=8.3e-29  Score=205.76  Aligned_cols=171  Identities=21%  Similarity=0.334  Sum_probs=146.7

Q ss_pred             ccCccEEEeeeeeeeeeee-cccccCCcEEEEEEEEEeecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcChhH
Q 022958           71 WFERPVIYDVRARPHLVES-TSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQ  149 (289)
Q Consensus        71 ~~~~v~~~~~~~~~~~~~~-~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~e  149 (289)
                      |++++..+|++.++++++. .+.|+|+++|+++++++|||  .|+..++..  ..++...+.+.+++.+|+++|+++++|
T Consensus         2 fi~~v~~vd~r~~~~~v~~~~v~TkD~~~V~v~~~v~yrI--~dp~~~~~~--v~~~~~~i~~~~~~~lR~vig~~~l~e   77 (188)
T 3bk6_A            2 IFEKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRV--VDPVKAVTQ--VKNYIMATSQISQTTLRSVIGQAHLDE   77 (188)
T ss_dssp             CEEECCCCCSSCEEEEEEEEEEECTTSCEEEEEEEEEEEE--SCHHHHHHS--SSCHHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred             ceEEEEEEeeeEEEEecCCceeEcCCCCEEEEEEEEEEEE--CCHHHHHHH--hcCHHHHHHHHHHHHHHHHHccCCHHH
Confidence            5688999999999999987 58999999999999999995  567766653  344555688999999999999999999


Q ss_pred             HhhhHHHHHHHHHHHHHHHhhcCCeEEEEEEeeccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 022958          150 LITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEA  229 (289)
Q Consensus       150 i~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie~~~~a~q~~~~a~~~i~~A~aea~~~~~~A~aea  229 (289)
                      ++++|++|+..+++.|++.+.+|||+|.+|.|++|+||+++.++|+++.              .|+.++++++++|+||+
T Consensus        78 ll~~R~~i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~ev~~a~~~~~--------------~Aere~~A~i~~Aege~  143 (188)
T 3bk6_A           78 LLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQA--------------EAERERRARITLAEAER  143 (188)
T ss_dssp             HHHCHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHHHHHHHHHHH--------------HHHHHHHHHHHHhHHHH
Confidence            9999999999999999999999999999999999999999999997432              26677888999999999


Q ss_pred             HHHHHHHHHh---hcChhhHHHHHHHHHHHHHH
Q 022958          230 TSAQLIGQAI---ANNPAFITLRKIEAAREIAQ  259 (289)
Q Consensus       230 ea~~~~~~a~---~~~p~~~~~~~~e~~~~i~~  259 (289)
                      +|+++++++.   +.+|.++++|++|++.+++.
T Consensus       144 ~a~~~~a~a~~~~~~~~~~l~lr~le~~~~ia~  176 (188)
T 3bk6_A          144 QAAEKLREAAEIISEHPMALQLRTLQTISDVAG  176 (188)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHTTC------
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhc
Confidence            9999998874   56999999999999999986

>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A

Probab=99.90  E-value=2.3e-23  Score=163.19  Aligned_cols=127  Identities=16%  Similarity=0.243  Sum_probs=101.2

Q ss_pred             EEccccCccEEEeeeeeeeeeeec-ccccCCcEEEEEEEEEeecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhc
Q 022958           67 LMVPWFERPVIYDVRARPHLVEST-SGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQY  145 (289)
Q Consensus        67 ~~~P~~~~v~~~~~~~~~~~~~~~-~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~  145 (289)
                      +..||++++.++|.+.++++++.+ +.|+|+..+.++++++|||  .|+.+++.  +.++.+..+...+++++|+++|++
T Consensus         3 l~~P~id~v~~vd~R~~~~d~~~q~vlT~D~~~v~Vd~~v~yrI--~Dp~~~~~--~v~~~~~~l~~~~~~~lR~vig~~   78 (133)
T 4fvg_A            3 LGSPSTDSAAKVDMRTISFDIPPQEVLTKDSVTISVDGVVYYRV--QNATLAVA--NITNADSATRLLAQTTLRNALGTK   78 (133)
T ss_dssp             -----------CCCSCEEEEEEEEEEECTTCCEEEEEEEEEEEE--SCHHHHHH--SSSCHHHHHHHHHHHHHHHHHHTS
T ss_pred             CCCCceeEEEEEEeEEEEecCCCeEEEeCCCCEEEEEEEEEEEE--eehHHhHh--hhhhHHHHHHHHHHHHHHHHhccc
Confidence            678999999999999999999874 9999999999999999995  67777775  556777789999999999999999


Q ss_pred             ChhHHhhhHHHHHHHHHHHHHHHhhcCCeEEEEEEeeccccCHHHHHHHHHH
Q 022958          146 NASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAK  197 (289)
Q Consensus       146 ~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie~~  197 (289)
                      ++++++++|++|+.++++.+++.+++|||+|.+|.|++++||+++.+||+++
T Consensus        79 ~ldeil~~r~~i~~~i~~~l~~~~~~~GI~V~~V~ikdi~~P~~v~~am~~~  130 (133)
T 4fvg_A           79 NLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAMAAE  130 (133)
T ss_dssp             CHHHHHHCHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEECCCC--------
T ss_pred             cHHHHHhhHHHHHHHHHHHHHHHHhcCCEEEEEEEEEecCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999643

>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1

Probab=99.81  E-value=3.5e-20  Score=146.82  Aligned_cols=126  Identities=8%  Similarity=0.111  Sum_probs=109.1

Q ss_pred             ccCccEEEeeeeeeeeeeec-ccccCCcEEEEEEEEEeecC--CCCHHHHHHHh-C--ccccccccchHHHHHHHHHHhh
Q 022958           71 WFERPVIYDVRARPHLVEST-SGSRDLQMVKIGLRVLTRPV--ADKLPTVYRAL-G--ENYNERVLPSIIHETLKAVVAQ  144 (289)
Q Consensus        71 ~~~~v~~~~~~~~~~~~~~~-~~T~D~~~v~v~~~v~y~i~--~~~~~~~~~~~-g--~~~~~~~l~~~~~~~lr~~~~~  144 (289)
                      |++++.++|.+.++++++.+ +.|+|+.++.+|+.++|||.  +..+......+ +  .+..+..+.+.+++.+|+++|+
T Consensus         3 ~i~~v~~vdlr~~~ldv~~q~viTkD~v~v~Vdavv~~rI~dd~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~LR~viG~   82 (143)
T 1win_A            3 SGSSGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGT   82 (143)
T ss_dssp             CCCCCCSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEEECceEEEeCCcceeEcCCCCEEEEEEEEEEEECCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhc
Confidence            56899999999999999885 89999999999999999983  22222223232 2  2445677889999999999999


Q ss_pred             cChhHHhhhHHHHHHHHHHHHHHHhhcCCeEEEEEEeeccccCHHHHHHHHH
Q 022958          145 YNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEA  196 (289)
Q Consensus       145 ~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie~  196 (289)
                      ++++|++++|++|++.+.+.+++.+.+||++|.+|.|++|++|+++.+||+.
T Consensus        83 ~tldeils~R~~i~~~v~~~~~~~~~~~Gi~V~~v~IkdI~~p~~~~~am~~  134 (143)
T 1win_A           83 LTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGK  134 (143)
T ss_dssp             SCHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEeecChHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999963

>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}

Probab=99.71  E-value=4.7e-18  Score=129.18  Aligned_cols=109  Identities=13%  Similarity=0.171  Sum_probs=97.3

Q ss_pred             EEeeeeeeeeeee-cccccCCcEEEEEEEEEeecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcChhHHhhhHH
Q 022958           77 IYDVRARPHLVES-TSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRE  155 (289)
Q Consensus        77 ~~~~~~~~~~~~~-~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~  155 (289)
                      ++|++.++++++. .+.|+|++++.++++++|||  .|+..++.++  .+.+..+.+.+++++|+++|+++++|++++|+
T Consensus         4 ~vd~r~~~~~~~~~~v~T~D~~~v~v~~~v~~rI--~dp~~~~~~v--~~~~~~l~~~~~~~lR~vig~~~l~ei~~~R~   79 (113)
T 2rpb_A            4 HVDLREHVIDVPPQEVICKDNVVVTVDAVVYYQV--IDPVKAVYNV--SDFLMAIVKLAQTNLRAIIGEMELDETLSGRD   79 (113)
T ss_dssp             CCCCCCEEEECCCEEEECTTSCEEEECEEEEEEE--SCTTTCTTTT--THHHHHHHHHHHHHHHHHHTSCCTTHHHHCHH
T ss_pred             EEeeeEEEEecCcceeEeCCCCEEEEEEEEEEEE--CCHHHHHHhc--CCHHHHHHHHHHHHHHHHHhcCcHHHHHhCHH
Confidence            5788888888876 58999999999999999996  5566666544  34556799999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCeEEEEEEeeccccCHH
Q 022958          156 TVSREIRKILTERAANFNIALDDVSITSLTFGKE  189 (289)
Q Consensus       156 ~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~  189 (289)
                      +|++.+++.+++.+++||++|.+|.|++++||++
T Consensus        80 ~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~e  113 (113)
T 2rpb_A           80 IINARLREELDKITDRWGVKITRVEIQRIDPPKD  113 (113)
T ss_dssp             HHHHHHHHHHHHHHGGGTEECCCEEECCCBCCCC
T ss_pred             HHHHHHHHHHHHHHHhcCeEEEEEEEEEecCCCC
Confidence            9999999999999999999999999999999974

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A

Probab=98.47  E-value=1.5e-05  Score=77.17  Aligned_cols=156  Identities=11%  Similarity=0.040  Sum_probs=101.1

Q ss_pred             EEEecCCeEEEEEccccCccceeeCCcceEEccccCccEEEeeee---------ee---------eeeeecccccCCcEE
Q 022958           38 LYNVEGGHRAIMFNRITGVKDKVYPEGTHLMVPWFERPVIYDVRA---------RP---------HLVESTSGSRDLQMV   99 (289)
Q Consensus        38 ~~~V~~g~~gVv~~r~gg~~~~~~~pG~~~~~P~~~~v~~~~~~~---------~~---------~~~~~~~~T~D~~~v   99 (289)
                      .|.||.+...-+++.-.+..+.+++|-+.+.-|- +.+..++.+-         ++         +.-...+-|+|...+
T Consensus       459 ~~rvphnaaVqvyDy~~~~~RvvfGP~lv~L~Pd-E~ftvlsLSgg~PK~~~~i~sl~L~lGPdf~tD~i~vET~DhArL  537 (861)
T 2zuo_A          459 SYRVPHNAAVQVYDYRAKRARVVFGPELVTLDPE-EQFTVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHARL  537 (861)
T ss_dssp             EEECCTTEEEEEECSSSCCEEEECSSCEEECCSS-CEECCEEECCSSSCCTTSEEESSEECSSCEEEEEEEEECTTCCEE
T ss_pred             EEEcCCCeEEEEEecCCCceEEEECCcEEEECCC-ccEEEEEecCCCCCCCCceEEEEeeeCCccceEEEEEEEcCceEE
Confidence            4678888877777522345566889998777775 4444444321         11         111124779999999


Q ss_pred             EEEEEEEeecCC---CCHHHHHHHhCccccccccchHHHHHHHHHHhhcChhHHhhhHHHHHHH-HHH------------
Q 022958          100 KIGLRVLTRPVA---DKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSRE-IRK------------  163 (289)
Q Consensus       100 ~v~~~v~y~i~~---~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~-v~~------------  163 (289)
                      .+..+..|+++.   ++..+.-.-|...++-..+-..+.+-+|..+++.+.++++.+-..|-.. +.-            
T Consensus       538 ~L~LsYnW~F~~~d~~~~~~~~k~Fsv~DFvGd~Ck~iaSriR~aVA~~~Fd~FHknsa~iir~aVFg~~~~~~~~~~~~  617 (861)
T 2zuo_A          538 QLQLAYNWHFELKNRNDPAEAAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGT  617 (861)
T ss_dssp             EEEEEEEEEECCTTTTCHHHHHGGGSSSSHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCCC----------
T ss_pred             EEEEEEEEEEeccCCCChhhhhhhccCCchHHHHHHHHHHHHHHHhhcCcHHHHhhhHHHHHHHhhcCCCcccccccccc
Confidence            999999998755   3444333334444443446788999999999999999999775555221 110            


Q ss_pred             ---HHHH--HhhcCCeEEEEEEeeccccCHH-HHHHH
Q 022958          164 ---ILTE--RAANFNIALDDVSITSLTFGKE-FTSAI  194 (289)
Q Consensus       164 ---~l~~--~l~~~Gi~v~~v~I~~i~~p~~-~~~ai  194 (289)
                         ..++  .|...|+.|.+|.|+++.|-++ .++++
T Consensus       618 ~~~~~~~~~~F~~N~lvitsVDvqsvEpvDqrtrd~L  654 (861)
T 2zuo_A          618 LLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDAL  654 (861)
T ss_dssp             ---CCCSCEECTTTCEEEEEEEEEEEEESSHHHHHHH
T ss_pred             cccCcccceEEccCCeEEEEEeeeeecccCHHHHHHH
Confidence               1111  2467799999999999998654 55554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	289
d1wina_	143	d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [T	1e-09

>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 143

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.6 bits (128), Expect = 1e-09
 Identities = 10/117 (8%), Positives = 40/117 (34%), Gaps = 5/117 (4%)

Query: 93  SRDLQMVKIGLRVLTRPVADKLPTVYR-----ALGENYNERVLPSIIHETLKAVVAQYNA 147
           + +   + +      + + +K                  + V+   +   L++++     
Sbjct: 26  TAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTV 85

Query: 148 SQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEA 204
            Q+   R+  ++ +R++         I +   +I  +    ++ S++   Q +   +
Sbjct: 86  EQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTSGPSS 142

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	289
d1wina_	143	Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]}	99.77

>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=6.7e-20  Score=143.34  Aligned_cols=127  Identities=8%  Similarity=0.114  Sum_probs=109.0

Q ss_pred             ccEEEeeeeeeeeeeec-ccccCCcEEEEEEEEEeecCCCCHHH--HHHHh---CccccccccchHHHHHHHHHHhhcCh
Q 022958           74 RPVIYDVRARPHLVEST-SGSRDLQMVKIGLRVLTRPVADKLPT--VYRAL---GENYNERVLPSIIHETLKAVVAQYNA  147 (289)
Q Consensus        74 ~v~~~~~~~~~~~~~~~-~~T~D~~~v~v~~~v~y~i~~~~~~~--~~~~~---g~~~~~~~l~~~~~~~lr~~~~~~~~  147 (289)
                      ++.++|++.++++++.+ +.|+||+++.|+++++|||..+....  ...++   ..++.+..+++.+++++|++++++++
T Consensus         6 s~~rislr~~~l~~~~q~v~TkD~v~v~V~a~v~~rV~~~~~~~~~a~~~~l~~~~~~~~~~i~~~~~~~lR~vig~~~l   85 (143)
T d1wina_           6 SGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTV   85 (143)
T ss_dssp             CCCSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred             ceeEeeeeEEeecCCCceEECCCCCEEEEEEEEEEEEcCcHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhccccH
Confidence            56788999999999875 89999999999999999984333221  11122   24667788999999999999999999


Q ss_pred             hHHhhhHHHHHHHHHHHHHHHhhcCCeEEEEEEeeccccCHHHHHHHHHHHHH
Q 022958          148 SQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVA  200 (289)
Q Consensus       148 ~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie~~~~a  200 (289)
                      ++++++|++|.+.+.+.+++.+++||++|.++.|+||++|++|.++|.+++.|
T Consensus        86 ~el~~~R~~i~~~v~~~i~~~l~~~Gi~v~~v~I~dI~~~~~~~~a~~~~q~A  138 (143)
T d1wina_          86 EQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTS  138 (143)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCC
T ss_pred             HHHHhCHHHHHHHHHHHHHHHHHHhCeEEEEEEEEecCCcHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999765543