Citrus Sinensis ID: 022978

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
Protein Sequence
MVLLSPSLSLPRLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQQNGFCRRDLVLFGLSSSLSLGFPTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSISASTLGKQWDEMGPFLEKSVASFHLLPPTDDYVPPYKDPWRFW
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccEEEcccccEEEEcccccccccccccEEEcccccccccccccccHHHccccccccccccccEEEEEEccccccEEEccccccccHHHHHHHHHHccccccccccccccHHHHHHccccccccEEEEEEEEEEEccccccccccccccEEEEEEEEEccEEEEEEcccccHHHHHHHHHHHHHHccEEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHccccccHHcccccccccccEEEcccccccccccccccHHHEEEHHHHHHHHHcccccHHHHHHHccccccEcccccEEEEcccccccccccEEEEEccccccccccccccHcHHHHcHHHHEcccccEEEEEEEcccccccccccccccccHHHHHHHHHccHHHccccccccccHHHHHHHHHccccccEEEEEEEEEEccccccccccccEHHHEEEEEEcccEEEEEEccccHHHHHHHHHHHHHHHHHccccccccccccccccccccc
Coil and Loop (DISEMBL)
mvllspslslprlhfirnhrgsivqgqkncrlnnkaivcscasskpiqqngfcrrDLVLFGlssslslgfptpgsvagedvkMASFVDEINAYtylypmelpskKFLFKWVesrkperyssaaplspnarLRIVSERVDIIDNLIIsvtigppnvqflkskdkstwnakdvadsvlsdksalRVTSSQRMAESSvldahtskvdgepywFYEYLIrksptnlgqepnlyrHYVASTAEREGYLYSISASTLGKQWDEMGPFLEKSVAsfhllpptddyvppykdpwrfw
Flexible Loop (DISEMBL)
mvllspslslprlHFIRNHRgsivqgqkncrlNNKAIVCSCASSKPIQQNGFCRRDLVLFGLSSSLSLGFPTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKperyssaaplspnarlRIVSERVDIIDNLIIsvtigppnvqFLKSKDKSTWNAKdvadsvlsdksalrvtssqrmaessvldahtskvdgEPYWFYEYLIRKsptnlgqepnLYRHYVASTAEREGYLYSISASTLGKQWDEMGPFLEKSVASFhllpptddyvppykDPWRFW
Low Complexity Region (SEG)
MVllspslslprlHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQQNGFCRRDLVlfglssslslgfPTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSISASTLGKQWDEMGPFLEKSVASFHLLPPTDDYVPPYKDPWRFW
Disordered region (IsUnstruct)
*********LPRLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQQNGFCRRDLVLFGLSSSLSLGFPTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVE****************ARLRIVSERVDIIDNLIISVTIGPPNVQFLK*******************************************VDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSISASTLGKQWDEMGPFLEKSVASFHLLPPTDDYVPPYKD*****
Disordered Region (DISOPRED)
********************************************************LVLFGLSSSLSLGFPTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKP****************IVSERVDIIDNLIISVTI***************WNAKDVADSVLSDK*********************SKVDGEPYWFYEYLIRKSP*******NLYRHYVASTAEREGYLYSISASTLGKQWDEMGPFLEKSVASFHLLPPTDDYVPPYKDPWRFW
Disordered Region (DISEMBL)
MVLLSPSLSLPRLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQQNGFCRRDLVLFGLSSSLSLGFPTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVE************LSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSAL****************HTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSISASTLGKQWDEMGPFLEKSVASFHLLPPTDDYVPPYKDPWRFW
Disordered Region (DISPRO)
****SPSLSLPRLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQQNGFCRRDLVLFGLSSSLSLGFPTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSALR******MA*SSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSISASTLGKQWDEMGPFLEKSVASFHLLPPTDDYVPPYKDPWRFW
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVLLSPSLSLPRLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQQNGFCRRDLVLFGLSSSLSLGFPTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSISASTLGKQWDEMGPFLEKSVASFHLLPPTDDYVPPYKDPWRFW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	289	2.2.26 [Sep-21-2011]
P82715	297	PsbP domain-containing pr	yes	no	0.993	0.966	0.625	1e-103

>sp|P82715|PPD5_ARATH PsbP domain-containing protein 5, chloroplastic OS=Arabidopsis thaliana GN=PPD5 PE=1 SV=3

 Score =  374 bits (961), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 187/299 (62%), Positives = 227/299 (75%), Gaps = 12/299 (4%)

Query: 1   MVLLSPSLSLPRLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQ-QNGFCRRDLVL 59
           M LL PSL  P     R  R S +  + +       I  S  S++ I  + G  RRDLVL
Sbjct: 1   MALLCPSLPSPNSRLFRC-RSSNISSKYHGASKELMIARSGVSTRSISSEKGLSRRDLVL 59

Query: 60  FGLSSSLSLGFPTPGSV---------AGEDVKMASFVDEINAYTYLYPMELPSKKFLFKW 110
            GLSS LS+  P    V         +GE++KM + VD+INAY+Y YP++ PS+K +FKW
Sbjct: 60  IGLSSPLSMFLPLSSPVTHAEEDVKMSGEELKMGTMVDDINAYSYAYPLDYPSEKLVFKW 119

Query: 111 VESRKPERYSSAAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKD 170
           VESRKPERYSSAAPLSP+ARLRIVSERVD+ DNL+IS++IGPPN + L SK+K TW+AK+
Sbjct: 120 VESRKPERYSSAAPLSPDARLRIVSERVDLTDNLVISISIGPPNSR-LTSKEKKTWSAKE 178

Query: 171 VADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYR 230
           VADSVLSDKSALRVTSSQR+ ESSVLDAH S +DGEPYW+YEYL+RKSPT + +   LYR
Sbjct: 179 VADSVLSDKSALRVTSSQRLEESSVLDAHASDIDGEPYWYYEYLVRKSPTKIAEASKLYR 238

Query: 231 HYVASTAEREGYLYSISASTLGKQWDEMGPFLEKSVASFHLLPPTDDYVPPYKDPWRFW 289
           HY++STAER+GYLY+I+ASTLGKQWD+MGP LE++V SF LLPPTD YVPPYKDPWRFW
Sbjct: 239 HYISSTAERDGYLYTINASTLGKQWDKMGPVLERAVGSFRLLPPTDSYVPPYKDPWRFW 297

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	289
224092386	295	predicted protein [Populus trichocarpa]	0.993	0.972	0.739	1e-122
225430097	284	PREDICTED: psbP domain-containing protei	0.961	0.978	0.734	1e-117
449441968	296	PREDICTED: psbP domain-containing protei	0.993	0.969	0.701	1e-114
449499583	296	PREDICTED: psbP domain-containing protei	0.993	0.969	0.697	1e-113
22326731	297	PsbP domain-containing protein 5 [Arabid	0.993	0.966	0.625	1e-101
297807183	297	hypothetical protein ARALYDRAFT_487981 [	0.993	0.966	0.628	1e-100
147790304	268	hypothetical protein VITISV_026424 [Viti	0.761	0.820	0.790	1e-99
356515500	295	PREDICTED: psbP domain-containing protei	0.993	0.972	0.622	1e-99
7573402	319	putative protein [Arabidopsis thaliana]	0.986	0.893	0.609	2e-99
255551118	251	conserved hypothetical protein [Ricinus	0.782	0.900	0.775	1e-98

>gi|224092386|ref|XP_002309586.1| predicted protein [Populus trichocarpa] gi|222855562|gb|EEE93109.1| predicted protein [Populus trichocarpa]

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 216/292 (73%), Positives = 248/292 (84%), Gaps = 5/292 (1%)

Query: 2   VLLSPSLSLPRLH--FIRNHRGSIVQGQKNCRLNNKAIVCSCA--SSKPIQQNGFCRRDL 57
           +L SPS      H  F RN +  I+  QK C+L  K + CSCA  SS P  QNGFCRRDL
Sbjct: 5   LLCSPSHFTTHHHNPFFRN-QSRILLSQKKCKLKEKIMACSCACSSSDPSLQNGFCRRDL 63

Query: 58  VLFGLSSSLSLGFPTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKPE 117
           VLFGLSSSLS+ FP+   +A ED+KMAS VDEINAYTY YP ELPSKKFLFKWVESRKPE
Sbjct: 64  VLFGLSSSLSIAFPSSEILAEEDLKMASVVDEINAYTYSYPAELPSKKFLFKWVESRKPE 123

Query: 118 RYSSAAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVADSVLS 177
           RYSSAAPLS +ARLRIVSERVDIIDNLI+SV+IGPPN+QF+KSKDK+TW AKDVADSVLS
Sbjct: 124 RYSSAAPLSSDARLRIVSERVDIIDNLILSVSIGPPNLQFVKSKDKNTWAAKDVADSVLS 183

Query: 178 DKSALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTA 237
           DKS+LRVTS+QR++ESS+LDAH +++DGEPYWFYEY++RKSPT   QE NL+R Y+ASTA
Sbjct: 184 DKSSLRVTSTQRLSESSILDAHANEIDGEPYWFYEYIVRKSPTKNAQESNLFRRYIASTA 243

Query: 238 EREGYLYSISASTLGKQWDEMGPFLEKSVASFHLLPPTDDYVPPYKDPWRFW 289
           ER+GYLYS+SASTL KQWD+MGP+LEK+VASF LLPPT DYVPPYKDPWRFW
Sbjct: 244 ERDGYLYSLSASTLSKQWDKMGPYLEKTVASFRLLPPTGDYVPPYKDPWRFW 295

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430097|ref|XP_002284586.1| PREDICTED: psbP domain-containing protein 5, chloroplastic [Vitis vinifera] gi|296081930|emb|CBI20935.3| unnamed protein product [Vitis vinifera]

 Score =  425 bits (1093), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 205/279 (73%), Positives = 231/279 (82%), Gaps = 1/279 (0%)

Query: 11  PRLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQQNGFCRRDLVLFGLSSSLSLGF 70
           P L   RNH  ++V  QK C L  K I CSC  S+P  + GF RRDL+LFG SSS +L F
Sbjct: 7   PNLLIFRNHTRTMV-NQKKCGLPEKIISCSCVPSRPNSKIGFYRRDLILFGFSSSAALIF 65

Query: 71  PTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNAR 130
           P  G    E+ KMAS VD+INAY+YLYP+ELPSKK +FKWVESRKPERYSSAAPLSP+AR
Sbjct: 66  PPSGYGTEEEFKMASVVDDINAYSYLYPLELPSKKLVFKWVESRKPERYSSAAPLSPDAR 125

Query: 131 LRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSALRVTSSQRM 190
           LRIVSERVDIIDNLIISVTIGPPN QFLKSKDK TW AKDVADSVL+DK+ALR+TSSQRM
Sbjct: 126 LRIVSERVDIIDNLIISVTIGPPNSQFLKSKDKGTWTAKDVADSVLADKAALRITSSQRM 185

Query: 191 AESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSISAST 250
           +ESSVLD H S+VDGEPYW+YEYLIRKSPT   QE N+YRHYVASTAER+GYLYS++ ST
Sbjct: 186 SESSVLDTHASEVDGEPYWYYEYLIRKSPTKSAQESNIYRHYVASTAERDGYLYSLNVST 245

Query: 251 LGKQWDEMGPFLEKSVASFHLLPPTDDYVPPYKDPWRFW 289
           + KQW  MGP LEK+ +SF LLPPT+DYVPPYKDPWRFW
Sbjct: 246 ISKQWKVMGPLLEKAASSFRLLPPTEDYVPPYKDPWRFW 284

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441968|ref|XP_004138754.1| PREDICTED: psbP domain-containing protein 5, chloroplastic-like [Cucumis sativus]

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 202/288 (70%), Positives = 239/288 (82%), Gaps = 1/288 (0%)

Query: 2   VLLSPSLSLPRLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQQNGFCRRDLVLFG 61
           V  S ++SLP L F RN   ++   +K   +  K  VCS + SKP  +NG  RRDL+LFG
Sbjct: 10  VSTSTNVSLPNLPFFRNQPKNL-PCRKRIGMYKKFNVCSTSISKPTSENGLSRRDLLLFG 68

Query: 62  LSSSLSLGFPTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSS 121
           L+SS++L FP+ GS+A E++K A+ VDEINAY+Y YP+EL S  F FKWVESRKPERYSS
Sbjct: 69  LTSSVALSFPSLGSLAEEELKAATMVDEINAYSYTYPLELSSTNFAFKWVESRKPERYSS 128

Query: 122 AAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSA 181
           AAPLSP+ARLRIVSERVD IDNLIISVTIGPPN  F+KSKDKSTW AKDVADSVLSDKSA
Sbjct: 129 AAPLSPDARLRIVSERVDFIDNLIISVTIGPPNSIFIKSKDKSTWAAKDVADSVLSDKSA 188

Query: 182 LRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREG 241
           LRVTSSQRMAESSVLD ++S +DGEPYW++EYL+RKSPT +  E N+YRHYVASTAER+G
Sbjct: 189 LRVTSSQRMAESSVLDTNSSNIDGEPYWYFEYLVRKSPTKIVGESNIYRHYVASTAERDG 248

Query: 242 YLYSISASTLGKQWDEMGPFLEKSVASFHLLPPTDDYVPPYKDPWRFW 289
           +LY+I+ASTLG QW+ MGPFL+K+V SF LLPPT+DYVPPYKDPWRFW
Sbjct: 249 FLYTINASTLGAQWNTMGPFLQKTVESFRLLPPTEDYVPPYKDPWRFW 296

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449499583|ref|XP_004160856.1| PREDICTED: psbP domain-containing protein 5, chloroplastic-like [Cucumis sativus]

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 201/288 (69%), Positives = 238/288 (82%), Gaps = 1/288 (0%)

Query: 2   VLLSPSLSLPRLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQQNGFCRRDLVLFG 61
           V  S ++SLP L F R    ++   +K   +  K  VCS + SKP  +NG  RRDL+LFG
Sbjct: 10  VSTSTNVSLPNLPFFRTQPKNL-PCRKRIGMYKKFNVCSTSISKPTSENGLSRRDLLLFG 68

Query: 62  LSSSLSLGFPTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSS 121
           L+SS++L FP+ GS+A E++K A+ VDEINAY+Y YP+EL S  F FKWVESRKPERYSS
Sbjct: 69  LTSSVALSFPSLGSLAEEELKAATMVDEINAYSYTYPLELSSTNFAFKWVESRKPERYSS 128

Query: 122 AAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSA 181
           AAPLSP+ARLRIVSERVD IDNLIISVTIGPPN  F+KSKDKSTW AKDVADSVLSDKSA
Sbjct: 129 AAPLSPDARLRIVSERVDFIDNLIISVTIGPPNSIFIKSKDKSTWAAKDVADSVLSDKSA 188

Query: 182 LRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREG 241
           LRVTSSQRMAESSVLD ++S +DGEPYW++EYL+RKSPT +  E N+YRHYVASTAER+G
Sbjct: 189 LRVTSSQRMAESSVLDTNSSNIDGEPYWYFEYLVRKSPTKIVGESNIYRHYVASTAERDG 248

Query: 242 YLYSISASTLGKQWDEMGPFLEKSVASFHLLPPTDDYVPPYKDPWRFW 289
           +LY+I+ASTLG QW+ MGPFL+K+V SF LLPPT+DYVPPYKDPWRFW
Sbjct: 249 FLYTINASTLGAQWNTMGPFLQKTVESFRLLPPTEDYVPPYKDPWRFW 296

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22326731|ref|NP_196706.2| PsbP domain-containing protein 5 [Arabidopsis thaliana] gi|190358920|sp|P82715.3|PPD5_ARATH RecName: Full=PsbP domain-containing protein 5, chloroplastic; AltName: Full=OEC23-like protein 6; AltName: Full=PsbP-related thylakoid lumenal protein 4; AltName: Full=Thylakoid lumenal 35.8 kDa protein; Flags: Precursor gi|18252955|gb|AAL62404.1| putative protein [Arabidopsis thaliana] gi|21389651|gb|AAM48024.1| putative protein [Arabidopsis thaliana] gi|332004298|gb|AED91681.1| PsbP domain-containing protein 5 [Arabidopsis thaliana]

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/299 (62%), Positives = 227/299 (75%), Gaps = 12/299 (4%)

Query: 1   MVLLSPSLSLPRLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQ-QNGFCRRDLVL 59
           M LL PSL  P     R  R S +  + +       I  S  S++ I  + G  RRDLVL
Sbjct: 1   MALLCPSLPSPNSRLFRC-RSSNISSKYHGASKELMIARSGVSTRSISSEKGLSRRDLVL 59

Query: 60  FGLSSSLSLGFPTPGSV---------AGEDVKMASFVDEINAYTYLYPMELPSKKFLFKW 110
            GLSS LS+  P    V         +GE++KM + VD+INAY+Y YP++ PS+K +FKW
Sbjct: 60  IGLSSPLSMFLPLSSPVTHAEEDVKMSGEELKMGTMVDDINAYSYAYPLDYPSEKLVFKW 119

Query: 111 VESRKPERYSSAAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKD 170
           VESRKPERYSSAAPLSP+ARLRIVSERVD+ DNL+IS++IGPPN + L SK+K TW+AK+
Sbjct: 120 VESRKPERYSSAAPLSPDARLRIVSERVDLTDNLVISISIGPPNSR-LTSKEKKTWSAKE 178

Query: 171 VADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYR 230
           VADSVLSDKSALRVTSSQR+ ESSVLDAH S +DGEPYW+YEYL+RKSPT + +   LYR
Sbjct: 179 VADSVLSDKSALRVTSSQRLEESSVLDAHASDIDGEPYWYYEYLVRKSPTKIAEASKLYR 238

Query: 231 HYVASTAEREGYLYSISASTLGKQWDEMGPFLEKSVASFHLLPPTDDYVPPYKDPWRFW 289
           HY++STAER+GYLY+I+ASTLGKQWD+MGP LE++V SF LLPPTD YVPPYKDPWRFW
Sbjct: 239 HYISSTAERDGYLYTINASTLGKQWDKMGPVLERAVGSFRLLPPTDSYVPPYKDPWRFW 297

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807183|ref|XP_002871475.1| hypothetical protein ARALYDRAFT_487981 [Arabidopsis lyrata subsp. lyrata] gi|297317312|gb|EFH47734.1| hypothetical protein ARALYDRAFT_487981 [Arabidopsis lyrata subsp. lyrata]

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 188/299 (62%), Positives = 227/299 (75%), Gaps = 12/299 (4%)

Query: 1   MVLLSPSLSLPRLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQ-QNGFCRRDLVL 59
           M LL P L  P     R  R S +  + +       I  S  S++ I  + G  RRDLVL
Sbjct: 1   MALLCPPLPSPNSRLFRC-RNSNISSKYHGESKELVIARSGVSTRSISSEKGLSRRDLVL 59

Query: 60  FGLSSSLSLGFP--TPGSVAGEDVK-------MASFVDEINAYTYLYPMELPSKKFLFKW 110
            GLSS LS+  P  +P + A ED+K       M + VD+INAY+Y YP++ PS+K +FKW
Sbjct: 60  IGLSSPLSMLLPLSSPVTHAEEDLKLGTEELKMGTMVDDINAYSYAYPLDYPSEKLVFKW 119

Query: 111 VESRKPERYSSAAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKD 170
           VESRKPERYSSAAPLSP+ARLRIVSERVD+IDNL+ISV+IGPPN + L SK+K TW AK+
Sbjct: 120 VESRKPERYSSAAPLSPDARLRIVSERVDLIDNLVISVSIGPPNSR-LTSKEKKTWAAKE 178

Query: 171 VADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYR 230
           VADSVLSDKSALRVTSSQR+ ESSVLDAH + +DGEPYW+YEYL+RKSPT + +   LYR
Sbjct: 179 VADSVLSDKSALRVTSSQRLEESSVLDAHATDIDGEPYWYYEYLVRKSPTKIAEASKLYR 238

Query: 231 HYVASTAEREGYLYSISASTLGKQWDEMGPFLEKSVASFHLLPPTDDYVPPYKDPWRFW 289
           HY++STAER+GYLY+I+ASTLGKQWD+MGP LE++V SF LLPPTD YVPPYKDPWRFW
Sbjct: 239 HYISSTAERDGYLYTINASTLGKQWDKMGPVLERAVGSFRLLPPTDSYVPPYKDPWRFW 297

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147790304|emb|CAN63319.1| hypothetical protein VITISV_026424 [Vitis vinifera]

 Score =  368 bits (945), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 174/220 (79%), Positives = 195/220 (88%)

Query: 70  FPTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNA 129
           F + G    E+ KMAS VD+INAY+YLYP+ELPSKK +FKWVESRKPERYSSAAPLSP+A
Sbjct: 49  FSSSGYGTEEEFKMASVVDDINAYSYLYPLELPSKKLVFKWVESRKPERYSSAAPLSPDA 108

Query: 130 RLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSALRVTSSQR 189
           RLRIVSERVDIIDNLIISVTIGPPN QFLKSKDK TW AKDVADSVL+DK+ALR+TSSQR
Sbjct: 109 RLRIVSERVDIIDNLIISVTIGPPNSQFLKSKDKGTWTAKDVADSVLADKAALRITSSQR 168

Query: 190 MAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSISAS 249
           M+ESSVLD H S+VDGEPYW+YEYLIRKSPT   QE N+YRHYVASTAER+GYLYS++ S
Sbjct: 169 MSESSVLDTHASEVDGEPYWYYEYLIRKSPTKSAQESNIYRHYVASTAERDGYLYSLNVS 228

Query: 250 TLGKQWDEMGPFLEKSVASFHLLPPTDDYVPPYKDPWRFW 289
           T+ KQW  MGP LEK+ +SF LLPPT+DYVPPYKDPWRFW
Sbjct: 229 TISKQWKVMGPLLEKAASSFRLLPPTEDYVPPYKDPWRFW 268

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515500|ref|XP_003526438.1| PREDICTED: psbP domain-containing protein 5, chloroplastic-like [Glycine max]

 Score =  368 bits (945), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 185/297 (62%), Positives = 228/297 (76%), Gaps = 10/297 (3%)

Query: 1   MVLLSPSLSL--------PRLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQQNGF 52
           MV  S SLSL        P     RN+  +I+  Q  C  + +    SC + KP  QN  
Sbjct: 1   MVFPSSSLSLFFPIPTLLPNNLIFRNNTRAIL-NQHKCPFSEERPRFSCCALKPTSQNRI 59

Query: 53  CRRDLVLFGLSSSLSLGFPTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVE 112
            RRDL+L GL+S LS   P   ++A E+ KMASF+DEINAY+Y+YP+ELPS  F FKW+E
Sbjct: 60  FRRDLMLLGLTS-LSPTMPLSVTLAEEEPKMASFLDEINAYSYMYPVELPSDNFTFKWIE 118

Query: 113 SRKPERYSSAAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVA 172
           SRKPERYSSAAPLSP+ARLRIVSER+D IDN+IISVTIGPPN  ++KSKDKS W AKDVA
Sbjct: 119 SRKPERYSSAAPLSPDARLRIVSERLDFIDNVIISVTIGPPNSSYIKSKDKSKWTAKDVA 178

Query: 173 DSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHY 232
           DSVL+D+S+LRVTSSQR+ ESSVL+ H+S++DGE YW+YEYL+RK+P  L  E + YRHY
Sbjct: 179 DSVLADRSSLRVTSSQRLEESSVLNTHSSEIDGEMYWYYEYLVRKAPLRLTDESSTYRHY 238

Query: 233 VASTAEREGYLYSISASTLGKQWDEMGPFLEKSVASFHLLPPTDDYVPPYKDPWRFW 289
           +ASTAER+GYLYSISAST+   W+++GPFL+K+V SF LL PT++YVPPYKDPWRFW
Sbjct: 239 LASTAERDGYLYSISASTVSPLWEKLGPFLDKAVNSFRLLSPTENYVPPYKDPWRFW 295

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7573402|emb|CAB87705.1| putative protein [Arabidopsis thaliana]

 Score =  368 bits (944), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 186/305 (60%), Positives = 227/305 (74%), Gaps = 20/305 (6%)

Query: 1   MVLLSPSLSLPRLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQ-QNGFCRRDLVL 59
           M LL PSL  P     R+   S +  + +       I  S  S++ I  + G  RRDLVL
Sbjct: 19  MALLCPSLPSPNSRLFRS---SNISSKYHGASKELMIARSGVSTRSISSEKGLSRRDLVL 75

Query: 60  FGLSSSLSLGFPTPGSV---------AGEDVKMASFVDEINAYTYLYPMELPSKKFLFKW 110
            GLSS LS+  P    V         +GE++KM + VD+INAY+Y YP++ PS+K +FKW
Sbjct: 76  IGLSSPLSMFLPLSSPVTHAEEDVKMSGEELKMGTMVDDINAYSYAYPLDYPSEKLVFKW 135

Query: 111 VESRKPERYSSAAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKD 170
           VESRKPERYSSAAPLSP+ARLRIVSERVD+ DNL+IS++IGPPN + L SK+K TW+AK+
Sbjct: 136 VESRKPERYSSAAPLSPDARLRIVSERVDLTDNLVISISIGPPNSR-LTSKEKKTWSAKE 194

Query: 171 VADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYR 230
           VADSVLSDKSALRVTSSQR+ ESSVLDAH S +DGEPYW+YEYL+RKSPT + +   LYR
Sbjct: 195 VADSVLSDKSALRVTSSQRLEESSVLDAHASDIDGEPYWYYEYLVRKSPTKIAEASKLYR 254

Query: 231 HYVASTAEREGYLYSISASTLGKQWD------EMGPFLEKSVASFHLLPPTDDYVPPYKD 284
           HY++STAER+GYLY+I+ASTLGKQWD      +MGP LE++V SF LLPPTD YVPPYKD
Sbjct: 255 HYISSTAERDGYLYTINASTLGKQWDKGLYKMQMGPVLERAVGSFRLLPPTDSYVPPYKD 314

Query: 285 PWRFW 289
           PWRFW
Sbjct: 315 PWRFW 319

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551118|ref|XP_002516607.1| conserved hypothetical protein [Ricinus communis] gi|223544427|gb|EEF45948.1| conserved hypothetical protein [Ricinus communis]

 Score =  365 bits (937), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 176/227 (77%), Positives = 199/227 (87%), Gaps = 1/227 (0%)

Query: 15  FIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQQNGFCRRDLVLFGLSSSLSLGFPTPG 74
           F+R ++  I+  QK C+L  K +VCSC SSKP   NGF RRD VLFGLSSS+S  FPT G
Sbjct: 19  FLRINQSRILLNQKRCKLKEKIMVCSC-SSKPTSFNGFLRRDFVLFGLSSSMSFVFPTSG 77

Query: 75  SVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIV 134
           S+A ED+KM   VDEINAYTYLYP+++PS KFLFKWVESRKPERYSSAAPLSP+ARLRIV
Sbjct: 78  SLAEEDLKMEPLVDEINAYTYLYPVKVPSTKFLFKWVESRKPERYSSAAPLSPDARLRIV 137

Query: 135 SERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSALRVTSSQRMAESS 194
           SERVDIIDNLIISVTIGPPNVQF+KSKDKSTW AKDVADSVLSDKSALRVTSSQR+AESS
Sbjct: 138 SERVDIIDNLIISVTIGPPNVQFIKSKDKSTWVAKDVADSVLSDKSALRVTSSQRLAESS 197

Query: 195 VLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREG 241
           VLD HTS++DGEPYW+YEYL+RKSP N+ +E NL+RHYVASTAER+G
Sbjct: 198 VLDTHTSEIDGEPYWYYEYLVRKSPINIAEESNLFRHYVASTAERDG 244

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	289
TAIR|locus:2144236	297	PPD5 "PsbP domain protein 5" [	0.871	0.848	0.646	1.1e-89

TAIR|locus:2144236 PPD5 "PsbP domain protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 895 (320.1 bits), Expect = 1.1e-89, P = 1.1e-89
 Identities = 170/263 (64%), Positives = 206/263 (78%)

Query:    37 IVCSCASSKPIQ-QNGFCRRDLVXXXXXXXXXXXXPTPGSV---------AGEDVKMASF 86
             I  S  S++ I  + G  RRDLV            P    V         +GE++KM + 
Sbjct:    36 IARSGVSTRSISSEKGLSRRDLVLIGLSSPLSMFLPLSSPVTHAEEDVKMSGEELKMGTM 95

Query:    87 VDEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIVSERVDIIDNLII 146
             VD+INAY+Y YP++ PS+K +FKWVESRKPERYSSAAPLSP+ARLRIVSERVD+ DNL+I
Sbjct:    96 VDDINAYSYAYPLDYPSEKLVFKWVESRKPERYSSAAPLSPDARLRIVSERVDLTDNLVI 155

Query:   147 SVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGE 206
             S++IGPPN + L SK+K TW+AK+VADSVLSDKSALRVTSSQR+ ESSVLDAH S +DGE
Sbjct:   156 SISIGPPNSR-LTSKEKKTWSAKEVADSVLSDKSALRVTSSQRLEESSVLDAHASDIDGE 214

Query:   207 PYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSISASTLGKQWDEMGPFLEKSV 266
             PYW+YEYL+RKSPT + +   LYRHY++STAER+GYLY+I+ASTLGKQWD+MGP LE++V
Sbjct:   215 PYWYYEYLVRKSPTKIAEASKLYRHYISSTAERDGYLYTINASTLGKQWDKMGPVLERAV 274

Query:   267 ASFHLLPPTDDYVPPYKDPWRFW 289
              SF LLPPTD YVPPYKDPWRFW
Sbjct:   275 GSFRLLPPTDSYVPPYKDPWRFW 297


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.132   0.405    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      289       266   0.00094  114 3  11 22  0.50    33
                                                     32  0.39    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  618 (66 KB)
  Total size of DFA:  216 KB (2119 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.95u 0.08s 24.03t   Elapsed:  00:00:02
  Total cpu time:  23.95u 0.08s 24.03t   Elapsed:  00:00:02
  Start:  Sat May 11 05:29:33 2013   End:  Sat May 11 05:29:35 2013

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015979 "photosynthesis" evidence=IEA

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P82715	PPD5_ARATH	No assigned EC number	0.6254	0.9930	0.9663	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	grail3.0013033101	hypothetical protein (295 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pg.C_LG_VI000277	SubName- Full=Putative uncharacterized protein; (257 aa)				•			•		0.499
	gw1.V.2242.1	hypothetical protein (193 aa)				•			•		0.452
	gw1.II.1652.1	photosystem II thylakoid lumenal 29.8 kDa protein PsbP (224 aa)				•			•		0.451

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	289
pfam01789	163	pfam01789, PsbP, PsbP	7e-12

>gnl|CDD|216701 pfam01789, PsbP, PsbP

 Score = 61.9 bits (151), Expect = 7e-12
 Identities = 46/207 (22%), Positives = 80/207 (38%), Gaps = 48/207 (23%)

Query: 70  FPTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNA 129
                + AG      ++VD  + Y +LYP           W              +S   
Sbjct: 1   ACKAKTNAG----FQAYVDTDDGYEFLYP---------TGWWREV----------VSDGP 37

Query: 130 RLRIVSERVDIIDNL-IISVTIGPPNVQFLKSKDKSTWN---AKDVADSVLSDKSALRVT 185
            +       D+I++   +SV I P        K KS  +    ++V + +L       + 
Sbjct: 38  DVVFH----DLIESDENVSVVISPV------DKKKSLEDLGSPEEVGERLLRGV----LA 83

Query: 186 SSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYS 245
                 E+ +L+A   +VDG+ Y+  EYL+R             RH +A+     G LY+
Sbjct: 84  PEGSGREAELLEASEREVDGKTYYDLEYLVR-LADGGD------RHELATVTVDRGKLYT 136

Query: 246 ISASTLGKQWDEMGPFLEKSVASFHLL 272
           ++A T  K+W ++    E+ V SF + 
Sbjct: 137 LAAQTNEKRWFKVKKLFERVVDSFSVA 163

This family consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria. The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+. Length = 163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	289
PLN00059	286	PsbP domain-containing protein 1; Provisional	100.0
PLN00042	260	photosystem II oxygen-evolving enhancer protein 2;	100.0
PLN00067	263	PsbP domain-containing protein 6; Provisional	100.0
PF01789	175	PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynt	100.0
PLN00066	262	PsbP domain-containing protein 4; Provisional	99.97
PLN03152	241	hypothetical protein; Provisional	99.93
PF08786	130	DUF1795: Domain of unknown function (DUF1795); Int	97.46
PRK11615	185	hypothetical protein; Provisional	89.37
COG5435	147	Uncharacterized conserved protein [Function unknow	87.48
PF12712	153	DUF3805: Domain of unknown function (DUF3805); Int	81.15

>PLN00059 PsbP domain-containing protein 1; Provisional

Probab=100.00  E-value=1e-49  Score=366.07  Aligned_cols=233  Identities=19%  Similarity=0.250  Sum_probs=201.5

Q ss_pred             CccccccCCCccccccccccCCCCceeeeccCCCccccccchhHHHHHHHHH--hhhhccCCCCCCCcccccCcceeeeC
Q 022978           12 RLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQQNGFCRRDLVLFGLS--SSLSLGFPTPGSVAGEDVKMASFVDE   89 (289)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~rR~~ll~gl~--~~~a~~~p~~~A~A~~a~~f~~~~D~   89 (289)
                      ++.+.||+++++.++.++++.+...+...|.. +.+..+++.||.+|+.++.  ...+.......|+|. .++|+.|+|+
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~rr~~~~~~l~~~~~~~s~~~~~~a~a~-~~~l~~y~D~  115 (286)
T PLN00059         38 HLLFSRPISSGPKHQSAKSAKPDSPVAINCLT-DAKQVCAVGRRKSMMMGLLMSGLIVSEANLPTAFAS-IPVFREYIDT  115 (286)
T ss_pred             hhhccccccCCcccccccccCCCCCeeeeccc-chhhhhhhhhhhhhHHHHHHHHHHHHhhcCchhhcC-CcccceeEcC
Confidence            47789999999999999999999899888885 5667899999999887664  333333444477775 4569999999


Q ss_pred             CCceEEeccCCCCCcceeccccccccccccCCCCCCCCCcceeeec----cccccccceeEEEEeCCchhhhhcccCccc
Q 022978           90 INAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIVS----ERVDIIDNLIISVTIGPPNVQFLKSKDKST  165 (289)
Q Consensus        90 ~dGYsF~YP~~W~s~e~~~~g~~~r~~D~~~s~apLs~nvrv~iv~----e~~~i~dn~~Vsvs~GPp~~~~l~~~d~~~  165 (289)
                      .|||+|+||.+|  .+|...|+|++|+|.++.    ++|++|.|.+    +.++|.|       +|+|+++.        
T Consensus       116 ~DGY~FlYP~GW--i~V~~~G~DVvFrD~Ie~----~ENVSV~ISs~sss~~~sLeD-------LGsP~eVg--------  174 (286)
T PLN00059        116 FDGYSFKYPQNW--IQVRGAGADIFFRDPVVL----DENLSVEFSSPSSSKYTSLED-------LGSPEEVG--------  174 (286)
T ss_pred             CCCeEEeCCCCC--eEeccCCCceEEeccCcc----ccceEEEEecCCcccCCChHH-------cCCHHHHH--------
Confidence            999999999999  788889999999999984    3899999875    4799999       99999877        


Q ss_pred             cchHHHHHhhhccccccccccccccccccEEeeeecee-CCeeeEEEEEEEecC---------CCCCCCCCCCcceEEEE
Q 022978          166 WNAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTSKV-DGEPYWFYEYLIRKS---------PTNLGQEPNLYRHYVAS  235 (289)
Q Consensus       166 ~~~~~la~~vLa~~ssgr~~~g~rv~~a~ll~a~~r~~-dGk~YY~~Ey~v~~~---------p~~~a~~~e~~RH~La~  235 (289)
                         |.|.+++|+++++.|.  |.+ ++++||+|++|+. ||++||+|||.+++.         ++++.+.++|.||+|++
T Consensus       175 ---erLlkqvLa~f~str~--Gsg-ReaeLVsA~~Re~~DGktYY~lEY~Vks~~~~n~~~~~~qdr~~~~~w~RH~LA~  248 (286)
T PLN00059        175 ---KRVLRQYLTEFMSTRL--GVK-REANILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYLAV  248 (286)
T ss_pred             ---HHHHHHHhcccccccC--CCC-cceEEEEeeeEEccCCcEEEEEEEEEEcCcccccccccccccccccccceeeEEE
Confidence               8999999998766444  222 2599999999977 999999999999984         67788889999999999


Q ss_pred             EEEECCEEEEEEeecCcchhhhhchhHHHhhcceeEcC
Q 022978          236 TAEREGYLYSISASTLGKQWDEMGPFLEKSVASFHLLP  273 (289)
Q Consensus       236 ~tv~~GkLYtl~~qa~EkrW~k~~~~l~~vv~SFrv~~  273 (289)
                      ++|+|||||||++|+||+||.|+++.|++||+||+|.+
T Consensus       249 v~V~nGkLYTL~~qtpE~RW~kvk~~f~~V~dSF~V~~  286 (286)
T PLN00059        249 LGVENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRVEK  286 (286)
T ss_pred             EEEeCCEEEEEEcCCcHHHHHHHHHHHHHHHhheeecC
Confidence            99999999999999999999999999999999999974

>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional

Probab=100.00  E-value=1.5e-48  Score=358.37  Aligned_cols=199  Identities=20%  Similarity=0.306  Sum_probs=168.0

Q ss_pred             cccchhHHHHHHHHHh--hhhccCCCCCCCcccccCcceee-------eCCCceEEeccCCC-CCcceeccccccccccc
Q 022978           49 QNGFCRRDLVLFGLSS--SLSLGFPTPGSVAGEDVKMASFV-------DEINAYTYLYPMEL-PSKKFLFKWVESRKPER  118 (289)
Q Consensus        49 ~~~~~rR~~ll~gl~~--~~a~~~p~~~A~A~~a~~f~~~~-------D~~dGYsF~YP~~W-~s~e~~~~g~~~r~~D~  118 (289)
                      ...+.||++|+.++++  .++.+.|+++||||++++|++..       .++|||+|+||.+| +++++.++|+|++|+|+
T Consensus        47 ~~~~srr~~l~~~~ga~a~~~~~~pa~aay~~~anvfg~~k~~~gF~~y~~dgY~FlyP~~W~~~ke~~~~G~dv~f~D~  126 (260)
T PLN00042         47 NSAVSRRAALALLAGAAAAGAKVSPANAAYGESANVFGKPKTNTGFLPYNGDGFKLLVPSKWNPSKEREFPGQVLRFEDN  126 (260)
T ss_pred             cccccHHHHHHHHHHHHHhhcccCchhhhhcchhhccCCCCCCCCCeEeeCCCeEEecCCCCccccccccCCceEEeecc
Confidence            3556677666554444  34778999999999987766532       15699999999999 77888999999999999


Q ss_pred             cCCCCCCCCCcceeeec-cccccccceeEEEEeCCchhhhhcccCccccchHHHHHhhhccc--cccccccccccccccE
Q 022978          119 YSSAAPLSPNARLRIVS-ERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDK--SALRVTSSQRMAESSV  195 (289)
Q Consensus       119 ~~s~apLs~nvrv~iv~-e~~~i~dn~~Vsvs~GPp~~~~l~~~d~~~~~~~~la~~vLa~~--ssgr~~~g~rv~~a~l  195 (289)
                      |+..    +|++|+|.+ ++++|.|       +|+|++ |++.++      +.|++++++++  +++++ .++.+++++|
T Consensus       127 ~~~~----eNVSV~Ispt~k~sI~d-------lGsPee-~l~~vg------ylL~kq~~a~~t~s~~Gf-~p~~vata~L  187 (260)
T PLN00042        127 FDAT----SNLSVMVTPTDKKSITD-------YGSPEE-FLSKVS------YLLGKQAYSGETASEGGF-DANAVATAAV  187 (260)
T ss_pred             cccc----ccEEEEEecCCcCCHhh-------cCCHHH-HHHHHH------HHHHhhhccCccccccCc-CcccccceeE
Confidence            9943    888999988 8899999       999986 555544      67899999887  23334 3666778999


Q ss_pred             EeeeeceeCCeeeEEEEEEEecCCCCCCCCCCCcceEEEEEEEECCEEEEEEeecCcchhhhh-chhHHHhhcceeE
Q 022978          196 LDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSISASTLGKQWDEM-GPFLEKSVASFHL  271 (289)
Q Consensus       196 l~a~~r~~dGk~YY~~Ey~v~~~p~~~a~~~e~~RH~La~~tv~~GkLYtl~~qa~EkrW~k~-~~~l~~vv~SFrv  271 (289)
                      |+++++++||++||+|||.+++     +++++++||+|+++||+|||||||++|+||+||+|+ ++.|++|++||+|
T Consensus       188 leas~re~dGk~YY~lE~~~~~-----ad~d~~~RH~LatatV~~GkLYtl~aqa~EkRW~K~~~k~l~~v~~SFsV  259 (260)
T PLN00042        188 LESSTQEVGGKPYYYLSVLTRT-----ADGDEGGKHQLITATVSDGKLYICKAQAGDKRWFKGARKFVEGAASSFSV  259 (260)
T ss_pred             EEeeeEEeCCeEEEEEEEEEec-----CCCCCCCceEEEEEEEECCEEEEEEecCchhhhhHHHHHHHHHHHhceec
Confidence            9999999999999999999998     778899999999999999999999999999999998 5679999999997

>PLN00067 PsbP domain-containing protein 6; Provisional

Probab=100.00  E-value=2.4e-36  Score=277.45  Aligned_cols=140  Identities=17%  Similarity=0.299  Sum_probs=120.8

Q ss_pred             eCCCceEEeccCCCCCcceecc---------------ccccccccccCCCCCCCCCcceeeec-------ccccccccee
Q 022978           88 DEINAYTYLYPMELPSKKFLFK---------------WVESRKPERYSSAAPLSPNARLRIVS-------ERVDIIDNLI  145 (289)
Q Consensus        88 D~~dGYsF~YP~~W~s~e~~~~---------------g~~~r~~D~~~s~apLs~nvrv~iv~-------e~~~i~dn~~  145 (289)
                      .++.||+|+||.+|  +++.++               |+|.+|+|+++      .|++|.|.+       +.++|+|   
T Consensus       102 ~~i~gY~FlyP~gW--~~v~Vs~~~sGnycqp~c~~p~~dv~F~D~~d------gnVSVIVSPV~r~t~k~~~sIeD---  170 (263)
T PLN00067        102 GNVQPYQFILPPTW--KQTRVANILSGNYCQPKCAEPWVEVKFEDEKQ------GKVQVVASPLIRLTNKPNATIEE---  170 (263)
T ss_pred             CCcccceEeCCCCC--cCccccccccCccccccccCCCceEEEeCCCC------CCEEEEEecccccccCCCCChHH---
Confidence            37899999999999  554443               58999999775      788888765       3478999   


Q ss_pred             EEEEeCCchhhhhcccCccccchHHHHHhhhccccccccccccccccccEEeeeeceeCCeeeEEEEEEEecCCCCCCCC
Q 022978          146 ISVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQE  225 (289)
Q Consensus       146 Vsvs~GPp~~~~l~~~d~~~~~~~~la~~vLa~~ssgr~~~g~rv~~a~ll~a~~r~~dGk~YY~~Ey~v~~~p~~~a~~  225 (289)
                          +|+|++.+           +.|++.+++.          ..++++||+|++++.||++||+|||.+++        
T Consensus       171 ----lGsPeeVl-----------~~Lg~~v~g~----------~~~~~eLLeAs~re~dGktYY~~E~~tp~--------  217 (263)
T PLN00067        171 ----IGSPEKLI-----------ASLGPFVTGN----------SYDPDELLETSVEKIGDQTYYKYVLETPF--------  217 (263)
T ss_pred             ----ccCHHHHH-----------HHhhHHhhcC----------CCCCcceEEeeeEeeCCeEEEEEEEEecC--------
Confidence                99999755           6677777641          22448999999999999999999999988        


Q ss_pred             CCCcceEEEEEEEECCEEEEEEeecCcchhhhhchhHHHhhcceeE
Q 022978          226 PNLYRHYVASTAEREGYLYSISASTLGKQWDEMGPFLEKSVASFHL  271 (289)
Q Consensus       226 ~e~~RH~La~~tv~~GkLYtl~~qa~EkrW~k~~~~l~~vv~SFrv  271 (289)
                      .+++||+|+++||++||||||++|++|+||+|+++.|++|++||+|
T Consensus       218 a~~gRHnLataTV~~GkLYtf~asanEkRW~K~k~~l~~V~dSFsV  263 (263)
T PLN00067        218 ALTGSHNLAKATAKGNTVVLFVVSASDKQWQSSEKTLKAILDSFQA  263 (263)
T ss_pred             CCCCceEEEEEEEECCEEEEEEecCCHHHHHHHHHHHHHHHHhccC
Confidence            7799999999999999999999999999999999999999999986

>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=100.00  E-value=3.2e-36  Score=262.41  Aligned_cols=155  Identities=24%  Similarity=0.456  Sum_probs=132.9

Q ss_pred             ccccCcceeeeCCCceEEeccCCCCCcceeccccccccccccCCCCCCCCCcceeeec--cccccccceeEEEEeCCchh
Q 022978           78 GEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIVS--ERVDIIDNLIISVTIGPPNV  155 (289)
Q Consensus        78 ~~a~~f~~~~D~~dGYsF~YP~~W~s~e~~~~g~~~r~~D~~~s~apLs~nvrv~iv~--e~~~i~dn~~Vsvs~GPp~~  155 (289)
                      +...+|..|.|+.+||+|+||.+|  .++...|++.+|+|.++.   . +|++|.|.+  ...+|.|       +|+|++
T Consensus        18 ~~~~~~~~y~d~~~~y~f~~P~gW--~~~~~~G~~v~f~d~~~~---~-~nvsV~v~p~~~~~sl~~-------lGs~~~   84 (175)
T PF01789_consen   18 EASTGFQPYTDSDDGYSFLYPSGW--EEVDVSGADVVFRDPIDA---D-ENVSVVVSPVPKDFSLED-------LGSPEE   84 (175)
T ss_dssp             T--SSEEEEEECTTTEEEEEETTE--EEEESTTEEEEEEETTET---T-SEEEEEEEE-STS-SGGG-------G-SHHH
T ss_pred             cCCCCceEEEcCCCCEEEECCCCC--eecCCCCeEEEEECcccc---c-ceEEEEEEecCCcCchhh-------cCCHHH
Confidence            335669999999999999999999  788889999999999983   2 788888877  3338999       999987


Q ss_pred             hhhcccCccccchHHHHHhhhccccccccccccccccccEEeeeeceeCCeeeEEEEEEEecCCCCCCCCCC-CcceEEE
Q 022978          156 QFLKSKDKSTWNAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPN-LYRHYVA  234 (289)
Q Consensus       156 ~~l~~~d~~~~~~~~la~~vLa~~ssgr~~~g~rv~~a~ll~a~~r~~dGk~YY~~Ey~v~~~p~~~a~~~e-~~RH~La  234 (289)
                      ..           +.+++..+..+.+++        .++||++++++.||++||+|||.+++        ++ ..||+|+
T Consensus        85 va-----------~~l~~~~~~~~~~~~--------~a~li~a~~~~~~g~~yY~~Ey~~~~--------~~~~~rh~l~  137 (175)
T PF01789_consen   85 VA-----------ERLLNGELASPGSGR--------EAELISASEREVDGKTYYEYEYTVQS--------PNEGRRHNLA  137 (175)
T ss_dssp             HH-----------HHHHHHCCCHCTSSE--------EEEEEEEEEEEETTEEEEEEEEEEEE--------TTEEEEEEEE
T ss_pred             HH-----------HHHhhhhcccccCCc--------ceEEEEeeeeecCCccEEEEEEEecc--------CCCcccEEEE
Confidence            55           778888777666543        39999999999999999999999988        54 8999999


Q ss_pred             EEEEECCEEEEEEeecCcchhhhhchhHHHhhcceeEc
Q 022978          235 STAEREGYLYSISASTLGKQWDEMGPFLEKSVASFHLL  272 (289)
Q Consensus       235 ~~tv~~GkLYtl~~qa~EkrW~k~~~~l~~vv~SFrv~  272 (289)
                      +++++|||||+|++|++|+||+|+++.|++|++||+|+
T Consensus       138 ~~tv~~g~lY~l~~~a~e~~w~k~~~~l~~iv~SF~v~  175 (175)
T PF01789_consen  138 VVTVKNGKLYTLTAQAPESRWDKVEPKLRKIVDSFRVY  175 (175)
T ss_dssp             EEEEETTEEEEEEEEEEHHHHHTCHHHHHHHHHC-EE-
T ss_pred             EEEEECCEEEEEEEEcCHHHHHHHHHHHHHHHhcEEeC
Confidence            99999999999999999999999999999999999985

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.

>PLN00066 PsbP domain-containing protein 4; Provisional

Probab=99.97  E-value=1.2e-31  Score=248.03  Aligned_cols=136  Identities=18%  Similarity=0.369  Sum_probs=112.6

Q ss_pred             eeCCCceEEeccCCCCCcceecc-----c--cccccccccCCCCCCCCCcceeeec---------cccccccceeEEEEe
Q 022978           87 VDEINAYTYLYPMELPSKKFLFK-----W--VESRKPERYSSAAPLSPNARLRIVS---------ERVDIIDNLIISVTI  150 (289)
Q Consensus        87 ~D~~dGYsF~YP~~W~s~e~~~~-----g--~~~r~~D~~~s~apLs~nvrv~iv~---------e~~~i~dn~~Vsvs~  150 (289)
                      +.++..|+|+||.+|  +|+.++     |  +|.||.+.-      +.|++|.|.+         ++++|.|       |
T Consensus       109 ~~~i~~Y~F~yP~GW--~ev~VS~~d~gg~~vd~Rf~~~~------~~nvsVvVspv~rla~~~~~~~sI~d-------L  173 (262)
T PLN00066        109 WSEITPYSFKVPQGW--EEVPVSIADLGGTEIDLRFASDK------EGRLKVVVAPVLRFADNLGDNATIEE-------I  173 (262)
T ss_pred             ccccCCeEEECCCCC--eEeecccccCCCCceEEEeccCC------CccEEEEEeccccccccccCCCChHH-------c
Confidence            347799999999999  666665     3  556666522      2788887765         5678888       9


Q ss_pred             CCchhhhhcccCccccchHHHHHhhhccccccccccccccccccEEeeeeceeCCeeeEEEEEEEecCCCCCCCCCCCcc
Q 022978          151 GPPNVQFLKSKDKSTWNAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYR  230 (289)
Q Consensus       151 GPp~~~~l~~~d~~~~~~~~la~~vLa~~ssgr~~~g~rv~~a~ll~a~~r~~dGk~YY~~Ey~v~~~p~~~a~~~e~~R  230 (289)
                      |||++++           +.+++.++...          .++++||++++++.||++||+|||   .            |
T Consensus       174 GspeeVi-----------~~l~~~v~g~~----------~~e~eLl~a~~re~dGktYY~~E~---~------------r  217 (262)
T PLN00066        174 GPPEKVI-----------SGFGPELIGEP----------VEEGKVLSMEVAEHSGRTYYQFEL---P------------P  217 (262)
T ss_pred             CCHHHHH-----------HHHHHHhcCCC----------ccccceeEeeeeecCCcEEEEEEE---e------------C
Confidence            9999765           66777776332          345899999999999999999998   1            6


Q ss_pred             eEEEEEEEECCEEEEEEeecCcchhhhhchhHHHhhcceeEcC
Q 022978          231 HYVASTAEREGYLYSISASTLGKQWDEMGPFLEKSVASFHLLP  273 (289)
Q Consensus       231 H~La~~tv~~GkLYtl~~qa~EkrW~k~~~~l~~vv~SFrv~~  273 (289)
                      |+|+++||.+||||||++|+||+||+|++++|++|++||+|+.
T Consensus       218 H~LasaTV~~GrLYt~~asape~rW~k~~~~lr~v~dSF~V~~  260 (262)
T PLN00066        218 HTLVTATAAGNRVYIFSVTANGLQWKRHYKDLKRIAKSFRVVT  260 (262)
T ss_pred             ceEEEEEEECCEEEEEEeecchHhhHHHHHHHHHHhhceeeec
Confidence            9999999999999999999999999999999999999999963

>PLN03152 hypothetical protein; Provisional

Probab=99.93  E-value=6.5e-26  Score=204.38  Aligned_cols=180  Identities=23%  Similarity=0.325  Sum_probs=113.5

Q ss_pred             eeeccCCCccccccchhHHHHHHHHH--h-hhhccCCCCCCCcccccC----cce-------eeeCCCceEEeccCCCCC
Q 022978           38 VCSCASSKPIQQNGFCRRDLVLFGLS--S-SLSLGFPTPGSVAGEDVK----MAS-------FVDEINAYTYLYPMELPS  103 (289)
Q Consensus        38 ~c~~~~~~~~~~~~~~rR~~ll~gl~--~-~~a~~~p~~~A~A~~a~~----f~~-------~~D~~dGYsF~YP~~W~s  103 (289)
                      .|+|..         .||++++-.++  + +++.--|...++|+..+.    ..-       |.--++||+.-||-++  
T Consensus        26 ~~~~~~---------~~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nt~~w~~~~g~gf~~~~pp~f--   94 (241)
T PLN03152         26 LSRCGA---------SRRDFILHTASLCASSLAAQNPLPPSLADPSKPSKPLLSGIANTKSWFQFYGDGFSIRVPPSF--   94 (241)
T ss_pred             cccccc---------cccceeeehhHHHHhhhhcCCCCCccccCCCCCCCchheeeecchhhhhhhCCceEEeCCCCh--
Confidence            466765         36887763332  1 122233455666655322    111       2236899999999998  


Q ss_pred             cce----ecccccccccc---------ccCCCCCCCCCcceeeec---------cccccccceeEEEEeCCchhhhhccc
Q 022978          104 KKF----LFKWVESRKPE---------RYSSAAPLSPNARLRIVS---------ERVDIIDNLIISVTIGPPNVQFLKSK  161 (289)
Q Consensus       104 ~e~----~~~g~~~r~~D---------~~~s~apLs~nvrv~iv~---------e~~~i~dn~~Vsvs~GPp~~~~l~~~  161 (289)
                      +.+    ++..--+-|-|         ||.|.- -++|++|.|.+         +.+||.|       +|+|        
T Consensus        95 ~di~e~~~~~~g~~~yg~~akp~~~~aRf~s~D-~sEnVSVVIspv~~LK~tfle~kDLtD-------LGsp--------  158 (241)
T PLN03152         95 EDIMEPEDYNAGLSLYGDKAKPRTFAARFASPD-GSEVLSVVIRPSNQLKITFLEAKDITD-------LGSL--------  158 (241)
T ss_pred             hhhcChhhcccccceecCCCCCcceeeeecCCC-CCceEEEEEecCccccccccccCChhH-------cCCH--------
Confidence            221    12111112222         444331 22455555543         4455555       5555        


Q ss_pred             CccccchHHHHHhhhccccccccccccccccccEEeeeeceeCCeeeEEEEEEEecCCCCCCCCCCCcceEEEEEEEECC
Q 022978          162 DKSTWNAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREG  241 (289)
Q Consensus       162 d~~~~~~~~la~~vLa~~ssgr~~~g~rv~~a~ll~a~~r~~dGk~YY~~Ey~v~~~p~~~a~~~e~~RH~La~~tv~~G  241 (289)
                             ++++ .+|.+.+..+.       .+.+++. +++.|||+||+|||.+            .+||+|++++|++|
T Consensus       159 -------~EVg-kv~vP~g~~~~-------saR~iel-~~E~dGKtYY~lEy~v------------~~RH~LaTVaVsrG  210 (241)
T PLN03152        159 -------KEAA-KIFVPGGATLY-------SARTIKV-KEEEGIRTYYFYEFGR------------DEQHVALVATVNSG  210 (241)
T ss_pred             -------HHHH-HhhCCCccccc-------ccceeee-eeecCCceeEEEEEEe------------CCcEEEEEEEEcCC
Confidence                   4566 44444432111       1334444 4588999999999998            27999999999999


Q ss_pred             EEEEEEeecCcchhhhhchhHHHhhcceeEc
Q 022978          242 YLYSISASTLGKQWDEMGPFLEKSVASFHLL  272 (289)
Q Consensus       242 kLYtl~~qa~EkrW~k~~~~l~~vv~SFrv~  272 (289)
                      |||||+++++|+||+|++++|+++++||+|+
T Consensus       211 KLYTl~aSt~EkRW~Kvk~kfr~aa~SFsV~  241 (241)
T PLN03152        211 KAYIAGATAPESKWDDDGVKLRSAAISLTVL  241 (241)
T ss_pred             eEEEEecCCchhchHHHHHHHHHHHhheeeC
Confidence            9999999999999999999999999999985

>PF08786 DUF1795: Domain of unknown function (DUF1795); InterPro: IPR014894 This is a bacterial protein of unknown function

Probab=97.46  E-value=0.0033  Score=51.93  Aligned_cols=69  Identities=14%  Similarity=0.112  Sum_probs=59.9

Q ss_pred             ccEEeeeeceeCCeeeEEEEEEEecCCCCCCCCCCCcceEEEEEEEEC-CEEEEEEeecCcchhhhhchhHHHhhcce
Q 022978          193 SSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAERE-GYLYSISASTLGKQWDEMGPFLEKSVASF  269 (289)
Q Consensus       193 a~ll~a~~r~~dGk~YY~~Ey~v~~~p~~~a~~~e~~RH~La~~tv~~-GkLYtl~~qa~EkrW~k~~~~l~~vv~SF  269 (289)
                      -.+++...-+.+|.+-+.++|.-+.        ....-|+..++...+ +++|+|+..++....++.++.++++++||
T Consensus        61 ~~~~~~~~~~l~~~~a~~l~~~~~~--------~g~~v~Q~q~~~~~~~~~~l~~T~t~~~~~~~~~~~~~~~i~~Sf  130 (130)
T PF08786_consen   61 FQLVERQPITLGGRPARELEYSFRS--------GGQPVYQRQAAVLLPGRRVLVFTYTAPGPFTEEQRAHWEAILKSF  130 (130)
T ss_dssp             -EEEEEEEEEETTEEEEEEEEEEEE--------TTCEEEEEEEEEEEC-CCEEEEEEEEECCCHHHHHHHHHHHHCT-
T ss_pred             cEEEeeEEEEeCCCCeEEEEEEEee--------CCEEEEEEEEEEEECCCEEEEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            5667766667799999999999977        667788988888888 99999999999999999999999999998

It forms an antiparallel beta sheet structure and contains some alpha helical regions. ; PDB: 1TU1_A 3LYD_A.

>PRK11615 hypothetical protein; Provisional

Probab=89.37  E-value=16  Score=33.02  Aligned_cols=99  Identities=8%  Similarity=0.092  Sum_probs=67.2

Q ss_pred             EEEEeCCchhhhhcccCccccchHHHHHhhhccccccccccccccccccEEeeee--ceeCCeeeEEEEEEEecCCCCCC
Q 022978          146 ISVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSALRVTSSQRMAESSVLDAHT--SKVDGEPYWFYEYLIRKSPTNLG  223 (289)
Q Consensus       146 Vsvs~GPp~~~~l~~~d~~~~~~~~la~~vLa~~ssgr~~~g~rv~~a~ll~a~~--r~~dGk~YY~~Ey~v~~~p~~~a  223 (289)
                      |.|++|+....+|          +.++.++..+...         +..++--..+  -+++|++..+++-.+..      
T Consensus        84 vIVi~gD~~~~~L----------d~la~rl~~qQr~---------rdp~lqvvsnK~i~i~G~~~qQLDS~~t~------  138 (185)
T PRK11615         84 VIVILGDDTNEDL----------AVLAKRLEDQQRS---------RDPQLQVVTNKAIELKGHKLQQLDSIISA------  138 (185)
T ss_pred             EEEEeCCCChhhH----------HHHHHHHHHHHHh---------hCcCceeecceeEEECCeeeEEeeeeeec------
Confidence            3344677666564          4577777643322         2244433444  35699999999988865      


Q ss_pred             CCCCCcceEEEEEEEECCEEEEEEeecCcchhhhhchhHHHhhcceeE
Q 022978          224 QEPNLYRHYVASTAEREGYLYSISASTLGKQWDEMGPFLEKSVASFHL  271 (289)
Q Consensus       224 ~~~e~~RH~La~~tv~~GkLYtl~~qa~EkrW~k~~~~l~~vv~SFrv  271 (289)
                        ....--+-++++.-+++|-||.+..|-+-=.+.+..-+.|+++..+
T Consensus       139 --~Gqk~~SSvvL~~v~~rl~tlQitlpA~nqqqaq~~ae~ii~tl~~  184 (185)
T PRK11615        139 --KGQTAYSSVVLGKVDNQLLTMQITLPADNQQQAQTTAENIINTLVI  184 (185)
T ss_pred             --CCceEEEEEEEEeeCCeEEEEEEecCCCCHHHHHHHHHHHHhheec
Confidence              3233334456677899999999999988888888888888887654

>COG5435 Uncharacterized conserved protein [Function unknown]

Probab=87.48  E-value=7  Score=34.19  Aligned_cols=76  Identities=18%  Similarity=0.166  Sum_probs=57.2

Q ss_pred             cEEeeeeceeCCeeeEEEEEEEecCCCCCCCCCCCcc-eEEEEEEEECCEEEEEEeecCcchhhhhchhHHHhhcceeEc
Q 022978          194 SVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYR-HYVASTAEREGYLYSISASTLGKQWDEMGPFLEKSVASFHLL  272 (289)
Q Consensus       194 ~ll~a~~r~~dGk~YY~~Ey~v~~~p~~~a~~~e~~R-H~La~~tv~~GkLYtl~~qa~EkrW~k~~~~l~~vv~SFrv~  272 (289)
                      ++..-.+-+++|..-...+|.-..      .+.+++| |++.++..+++++-+|++.++-.-=++.++...+++.||...
T Consensus        69 ~~~~~~e~~v~~~aa~~~~y~w~~------~~~~~r~v~q~~~~i~~g~~vLifT~Tt~~~ftp~q~~~~~~~I~Sf~p~  142 (147)
T COG5435          69 ELHHRREIEVGGAAAPLLDYQWTS------PEGEQRRVQQRQVFIERGDTVLIFTLTTPGEFTPSQKKAWEQVIQSFVPN  142 (147)
T ss_pred             EEeeccccccCccccceeEEEeec------CCCCCceEEEEEeecccCCeEEEEEecCCCCCCHHHHHHHHHHHHhcCCC
Confidence            444445567789888888887765      1234444 556666667789999999999888888889999999999987


Q ss_pred             CCC
Q 022978          273 PPT  275 (289)
Q Consensus       273 ~~~  275 (289)
                      ++-
T Consensus       143 ~~~  145 (147)
T COG5435         143 PPE  145 (147)
T ss_pred             CCC
Confidence            764

>PF12712 DUF3805: Domain of unknown function (DUF3805); InterPro: IPR024315 This entry represents an N-terminal domain found in a family of bacterial proteins, whose function is unknown

Probab=81.15  E-value=22  Score=31.07  Aligned_cols=133  Identities=16%  Similarity=0.136  Sum_probs=58.1

Q ss_pred             cceeeeCCCceEEeccCCCCCccee-ccccccccccccCCCCCCCCCcceeeeccccccccceeEEEEeCCchhhhhccc
Q 022978           83 MASFVDEINAYTYLYPMELPSKKFL-FKWVESRKPERYSSAAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSK  161 (289)
Q Consensus        83 f~~~~D~~dGYsF~YP~~W~s~e~~-~~g~~~r~~D~~~s~apLs~nvrv~iv~e~~~i~dn~~Vsvs~GPp~~~~l~~~  161 (289)
                      |++|+.++-=|+..||++|  -|++ ..|--++|.                    +..-++|+-||.- -+-+..+    
T Consensus         1 mkKfiSpg~WFS~~YP~~W--~EfED~E~sflFYn--------------------p~~WTGNfRISay-k~~~~~y----   53 (153)
T PF12712_consen    1 MKKFISPGAWFSMEYPADW--NEFEDGEGSFLFYN--------------------PDQWTGNFRISAY-KGGSAQY----   53 (153)
T ss_dssp             -EEEE-GGG-EEEEE-TT---EEE---TTEEEEE---------------------SSS---EEEEEEE-E--STTH----
T ss_pred             CCcccCCCceEEEecCCCc--chhccCCcceEEEC--------------------hHHhcCceEEEEE-ecccccc----
Confidence            5789999999999999999  4533 112222322                    1124557666652 1111112    


Q ss_pred             CccccchHHHHHhhhccccccccccccccccccEEeeeec---eeCCeeeEEEEEEEecCCCCCCCCCCCcceEEEEEEE
Q 022978          162 DKSTWNAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTS---KVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAE  238 (289)
Q Consensus       162 d~~~~~~~~la~~vLa~~ssgr~~~g~rv~~a~ll~a~~r---~~dGk~YY~~Ey~v~~~p~~~a~~~e~~RH~La~~tv  238 (289)
                            +++..++-|....+.     +.|...++--|.+.   +.+| .||+=                   |..  ++-
T Consensus        54 ------gk~~i~~EL~en~~a-----~~vkvg~~~caYs~E~f~eeg-~~Yts-------------------H~W--vtg  100 (153)
T PF12712_consen   54 ------GKECIRQELKENPSA-----KLVKVGNWECAYSKEMFQEEG-AYYTS-------------------HLW--VTG  100 (153)
T ss_dssp             ------HHHHHHHHHHH-TT------EEEEETTEEEEEEEEEEEETT-EEEEE-------------------EEE--EEE
T ss_pred             ------hHHHHHHHHHhCCCc-----ceEEeccEEEEEEhhhhhccC-eeEEE-------------------EEE--EEe
Confidence                  366666666533220     11122222222222   2344 34432                   333  334


Q ss_pred             ECCEEEEEEeecCcchhhhhchhHHHhhcceeEcCCCCCC
Q 022978          239 REGYLYSISASTLGKQWDEMGPFLEKSVASFHLLPPTDDY  278 (289)
Q Consensus       239 ~~GkLYtl~~qa~EkrW~k~~~~l~~vv~SFrv~~~~~~~  278 (289)
                      .++..|.|....+-.   ......+.|+.|..|.+....|
T Consensus       101 ~~~~sfeCSFTv~kg---~~~~~aE~iiasL~vR~~~~ky  137 (153)
T PF12712_consen  101 EGDVSFECSFTVPKG---ESVKEAEEIIASLEVRKEGQKY  137 (153)
T ss_dssp             ETTEEEEEEEEEETT------HHHHHHHHH-EE--TT---
T ss_pred             cCceEEEEEEEccCC---CCcchHHHHHhhheehhccCCC
Confidence            566777766655421   1234578899999999988887

In two related Bacteroides species, the gene for members of this family lies immediately upstream from a putative ATP binding component of an ATP transporter and a putative histidinol phosphatase. The structure of this domain is strikingly similar to the N-terminal structure of 1tui, also of unknown function. The domain carries four conserved tryptophan residues.; PDB: 3HLZ_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	289
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	3e-22
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	3e-22
2vu4_A	273	Oxygen-evolving enhancer protein 2; kDa protein, t	6e-22
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	2e-20

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP} Length = 170

 Score = 89.9 bits (222), Expect = 3e-22
 Identities = 38/202 (18%), Positives = 66/202 (32%), Gaps = 35/202 (17%)

Query: 71  PTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNAR 130
           P           +  + D  + Y +LYP           W+                 A 
Sbjct: 2   PLGSCGGVGIASLQRYSDTKDGYEFLYP---------NGWIGVDVK-----------GAS 41

Query: 131 LRIVSERVDIIDNLI-ISVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSALRVTSSQR 189
             +     D+I+    +SV I                 A DV    +   +     +SQ 
Sbjct: 42  PGVDVVFRDLIERDENLSVIISEIPSDK---TLTDLGTATDVGYRFMKTVND----ASQG 94

Query: 190 MAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSISAS 249
             ++ +++A     DG+ Y+  EY +           N+ RH +AS     G L +   S
Sbjct: 95  DRQAELINAEARDEDGQVYYTLEYRVLVGD-------NVERHDLASVTTNRGKLITFDLS 147

Query: 250 TLGKQWDEMGPFLEKSVASFHL 271
           T   +WD +    +   +SFH+
Sbjct: 148 TAEDRWDTVKSLFDTVASSFHV 169

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2 Length = 177

 Score = 89.9 bits (222), Expect = 3e-22
 Identities = 37/187 (19%), Positives = 67/187 (35%), Gaps = 31/187 (16%)

Query: 91  NAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIVSERVDIIDNLIISVTI 150
           + +    P          KW  +++ E         P   LR   +  D   N+   V I
Sbjct: 15  DGFKLQIP---------SKWNPNKEVE--------YPGQVLRF-EDNFDATSNV--IVAI 54

Query: 151 GPPNVQFLKSKDKSTWNAKDV-----ADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDG 205
            P + + +            V       +      +     S  +A ++VL+  T++V G
Sbjct: 55  TPTDKKSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGG 114

Query: 206 EPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSISASTLGKQWDEMG-PFLEK 264
           + Y++   L R +  N G      +H + +    +G LY   A    K+W +    F+E 
Sbjct: 115 KQYYYLSILTRTADGNEG-----GKHQLVTATVNDGKLYICKAQAGDKRWFKGAKKFVEN 169

Query: 265 SVASFHL 271
           +  SF L
Sbjct: 170 TATSFSL 176

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus} Length = 165

 Score = 85.3 bits (210), Expect = 2e-20
 Identities = 32/190 (16%), Positives = 72/190 (37%), Gaps = 34/190 (17%)

Query: 83  MASFVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIVSERVDIID 142
           + ++VD  + Y +LYP           WV+ +  +          +     + E  + + 
Sbjct: 8   LQAYVDSYDGYEFLYP---------RGWVQVQVED--------PVDVVFHDIIETTENV- 49

Query: 143 NLIISVTIGPPNVQF-LKSKDKSTWNAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTS 201
               SV +        L+           +  ++++   + R         S+++ A + 
Sbjct: 50  ----SVVVNTVASTKSLEELGSPEEVGDRLLRNIIAPSESGR--------SSALIAATSQ 97

Query: 202 KVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSISASTLGKQWDEMGPF 261
           K D + Y+  EY +         +    RH ++S A   G +Y++S S   ++W ++   
Sbjct: 98  KADDKTYYILEYAVTLPGDGNTAQ---QRHNLSSIAVSRGKVYTLSVSAPEERWPKVEDQ 154

Query: 262 LEKSVASFHL 271
            +  V+SF +
Sbjct: 155 FKTIVSSFTV 164

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	289
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	100.0
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	100.0
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	100.0
1tu1_A	148	Hypothetical protein PA0094; structural genomics,	97.64
3lyd_A	161	Uncharacterized protein; PSI-2, MCSG, GEBA, genomi	94.3

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2

Probab=100.00  E-value=9.1e-38  Score=273.22  Aligned_cols=165  Identities=23%  Similarity=0.390  Sum_probs=128.2

Q ss_pred             cCcceeeeCCCceEEeccCCC-CCcceeccccccccccccCCCCCCCCCcceeeec-cccccccceeEEEEeCCchhhhh
Q 022978           81 VKMASFVDEINAYTYLYPMEL-PSKKFLFKWVESRKPERYSSAAPLSPNARLRIVS-ERVDIIDNLIISVTIGPPNVQFL  158 (289)
Q Consensus        81 ~~f~~~~D~~dGYsF~YP~~W-~s~e~~~~g~~~r~~D~~~s~apLs~nvrv~iv~-e~~~i~dn~~Vsvs~GPp~~~~l  158 (289)
                      .+|+.|.  .|||+|+||.+| +.+++.++|++++|+|+++.    ++|++|.|.+ ++++|.|       +|+|++ ++
T Consensus         7 ~g~~~y~--~~gysf~yP~~W~~~~~~~~~G~~~~f~d~~~~----~~nvsV~v~p~~~~si~d-------lGspe~-~~   72 (177)
T 1v2b_A            7 TDFQTYN--GDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDA----TSNVIVAITPTDKKSITD-------FGSPEQ-FL   72 (177)
T ss_dssp             CCEEEEE--CSSEEEEEETTCEECCCCCSTTEEEEEEETTEE----EEEEEEEEEECSCSSGGG-------GCSHHH-HH
T ss_pred             CCceEEe--cCCEEEEcCCCCcccccccCCCceEEEeCCcCC----CccEEEEEeCCCCCChhH-------CCCHHH-HH
Confidence            4599997  999999999999 55566788999999999973    2788898887 8899999       999986 43


Q ss_pred             cccCccccchHHHHHhhhccc--cccccccccccccccEEeeeeceeCCeeeEEEEEEEecCCCCCCCCCCCcceEEEEE
Q 022978          159 KSKDKSTWNAKDVADSVLSDK--SALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVAST  236 (289)
Q Consensus       159 ~~~d~~~~~~~~la~~vLa~~--ssgr~~~g~rv~~a~ll~a~~r~~dGk~YY~~Ey~v~~~p~~~a~~~e~~RH~La~~  236 (289)
                      +.+.      +.|.+++|+++  +++++ +++.+++++||++++++.||++||+|||.+++     +++.|++||+|+++
T Consensus        73 ~~v~------~~l~~~~~~~~~~~~~gf-~~~~~~~a~ll~a~~r~~~G~~YY~~E~~~~~-----~~g~e~~rH~l~~~  140 (177)
T 1v2b_A           73 SQVD------YLLGRQAYSGKTDSEGGF-ESDAVAIANVLETSTAEVGGKQYYYLSILTRT-----ADGNEGGKHQLVTA  140 (177)
T ss_dssp             HHTG------GGC-------------------CCCEEEEEEEEEEEETTEEEEEEEEEEEC----------CCEEEEEEE
T ss_pred             HHHH------HHHHHHhhcccccccCCc-ccCcccceEEEEeEEEEeCCeEEEEEEEEEec-----CCCCccccEEEEEE
Confidence            4332      56777778764  45555 34566789999999999999999999999998     34556999999999


Q ss_pred             EEECCEEEEEEeecCcchhhhh-chhHHHhhcceeE
Q 022978          237 AEREGYLYSISASTLGKQWDEM-GPFLEKSVASFHL  271 (289)
Q Consensus       237 tv~~GkLYtl~~qa~EkrW~k~-~~~l~~vv~SFrv  271 (289)
                      ||+|||||+|++|++|+||+++ ++.|++|++||+|
T Consensus       141 tv~~gkLY~l~~~a~e~~W~k~~~~~l~~v~~SF~v  176 (177)
T 1v2b_A          141 TVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSL  176 (177)
T ss_dssp             EEETTEEEEEEEEEEGGGCSTTTTHHHHHHHHTCEE
T ss_pred             EEECCEEEEEEEecCHHHhhhhHHHHHHHHHhheec
Confidence            9999999999999999999995 9999999999998

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}

Probab=100.00  E-value=3.4e-34  Score=245.33  Aligned_cols=157  Identities=19%  Similarity=0.373  Sum_probs=130.9

Q ss_pred             cCcceeeeCCCceEEeccCCCCCcceecc-ccccccccccCCCCCCCCCcceeeec-c-ccccccceeEEEEeCCchhhh
Q 022978           81 VKMASFVDEINAYTYLYPMELPSKKFLFK-WVESRKPERYSSAAPLSPNARLRIVS-E-RVDIIDNLIISVTIGPPNVQF  157 (289)
Q Consensus        81 ~~f~~~~D~~dGYsF~YP~~W~s~e~~~~-g~~~r~~D~~~s~apLs~nvrv~iv~-e-~~~i~dn~~Vsvs~GPp~~~~  157 (289)
                      .+|..|.|+.+||+|+||.+|  .++.++ |++++|+|.++..    .|++|.|.+ . ..+|.|       +|+|+++.
T Consensus         6 ~g~~~~~D~~~gysf~~P~~W--~~~~~~~g~~v~f~d~~~~~----~~v~V~v~p~~~~~~l~~-------~G~~e~va   72 (165)
T 2xb3_A            6 SGLQAYVDSYDGYEFLYPRGW--VQVQVEDPVDVVFHDIIETT----ENVSVVVNTVASTKSLEE-------LGSPEEVG   72 (165)
T ss_dssp             CCEEEEEETTTTEEEEEETTE--EEECCCTTEEEEEEESSCTT----SEEEEEEEECSSCCCSGG-------GCCHHHHH
T ss_pred             CCceEEEcCCCCEEEEcCCCC--eEecCCCCceEEEECcccCC----ceEEEEEecCCCCCChHH-------cCCHHHHH
Confidence            459999999999999999999  666777 9999999998732    678887766 3 378888       99998754


Q ss_pred             hcccCccccchHHHHHhhhccccccccccccccccccEEeeeeceeCCeeeEEEEEEEecCCCCCCCCCCCcceEEEEEE
Q 022978          158 LKSKDKSTWNAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTA  237 (289)
Q Consensus       158 l~~~d~~~~~~~~la~~vLa~~ssgr~~~g~rv~~a~ll~a~~r~~dGk~YY~~Ey~v~~~p~~~a~~~e~~RH~La~~t  237 (289)
                                 +.|++++++.+.++        +.++|+++++++.||++||+|||.+++ |..+  ..++.||+|++++
T Consensus        73 -----------~~l~~~~~~~~~~~--------~~~~l~~a~~r~~~G~~yY~~Ey~~~~-~~~~--~~~~~rh~l~~~~  130 (165)
T 2xb3_A           73 -----------DRLLRNIIAPSESG--------RSSALIAATSQKADDKTYYILEYAVTL-PGDG--NTAQQRHNLSSIA  130 (165)
T ss_dssp             -----------HHHHHHTTSCTTSS--------CEEEEEEEEEEEETTEEEEEEEEEEEC-C-------CCEEEEEEEEE
T ss_pred             -----------HHHHHHhhcCCCCC--------cceEEEEeeeeecCCceEEEEEEEEec-CCCc--cCccccEEEEEEE
Confidence                       66777777655433        349999999999999999999999987 1100  0248999999999


Q ss_pred             EECCEEEEEEeecCcchhhhhchhHHHhhcceeEc
Q 022978          238 EREGYLYSISASTLGKQWDEMGPFLEKSVASFHLL  272 (289)
Q Consensus       238 v~~GkLYtl~~qa~EkrW~k~~~~l~~vv~SFrv~  272 (289)
                      +++||||+|++|+||++|.++++.|++|++||+|+
T Consensus       131 v~~g~lY~l~~sape~~w~~~~~~l~~v~~SF~v~  165 (165)
T 2xb3_A          131 VSRGKVYTLSVSAPEERWPKVEDQFKTIVSSFTVY  165 (165)
T ss_dssp             EETTEEEEEEEEEEGGGHHHHHHHHHHHHHTCEEC
T ss_pred             EECCEEEEEEEecCHHHhHHHHHHHHHHHhhEEeC
Confidence            99999999999999999999999999999999985

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}

Probab=100.00  E-value=7.2e-35  Score=251.85  Aligned_cols=153  Identities=21%  Similarity=0.325  Sum_probs=133.7

Q ss_pred             ccCcceeeeCCCceEEeccCCCCCcceecc----ccccccccccCCCCCCCCCcceeeec-cc-cccccceeEEEEeCCc
Q 022978           80 DVKMASFVDEINAYTYLYPMELPSKKFLFK----WVESRKPERYSSAAPLSPNARLRIVS-ER-VDIIDNLIISVTIGPP  153 (289)
Q Consensus        80 a~~f~~~~D~~dGYsF~YP~~W~s~e~~~~----g~~~r~~D~~~s~apLs~nvrv~iv~-e~-~~i~dn~~Vsvs~GPp  153 (289)
                      ..+|+.|.|+.|||+|+||.+|  +++.++    |++.+|+|.++..    +|++|.|.+ .+ .+|.|       +|+|
T Consensus        11 ~~g~~~y~d~~~gy~f~~P~gW--~~~~~~~~~~g~~v~f~d~~~~~----~nvsV~v~p~~~~~si~d-------~G~p   77 (170)
T 2lnj_A           11 IASLQRYSDTKDGYEFLYPNGW--IGVDVKGASPGVDVVFRDLIERD----ENLSVIISEIPSDKTLTD-------LGTA   77 (170)
Confidence            4459999999999999999999  566667    9999999998742    678888777 44 88999       9999


Q ss_pred             hhhhhcccCccccchHHHHHhhhccccccccccccccccccEEeeeeceeCCeeeEEEEEEEecCCCCCCCCC-CCcceE
Q 022978          154 NVQFLKSKDKSTWNAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEP-NLYRHY  232 (289)
Q Consensus       154 ~~~~l~~~d~~~~~~~~la~~vLa~~ssgr~~~g~rv~~a~ll~a~~r~~dGk~YY~~Ey~v~~~p~~~a~~~-e~~RH~  232 (289)
                      +++.           +.+++.+++++.++        ++++||++++++.||++||+|||.+++        + ++.||+
T Consensus        78 e~va-----------~~l~~~~~~~~~~~--------~~a~li~a~~~~~~G~~yY~~Ey~~~~--------~~~~~rh~  130 (170)
T 2lnj_A           78 TDVG-----------YRFMKTVNDASQGD--------RQAELINAEARDEDGQVYYTLEYRVLV--------GDNVERHD  130 (170)
Confidence            8754           67888877665443        349999999999999999999999987        5 699999


Q ss_pred             EEEEEEECCEEEEEEeecCcchhhhhchhHHHhhcceeEc
Q 022978          233 VASTAEREGYLYSISASTLGKQWDEMGPFLEKSVASFHLL  272 (289)
Q Consensus       233 La~~tv~~GkLYtl~~qa~EkrW~k~~~~l~~vv~SFrv~  272 (289)
                      |+++++++||||+|++|+||++|.++++.|++|++||+|+
T Consensus       131 l~~~~v~~gklY~l~~~ape~~w~~~~~~l~~v~~SF~v~  170 (170)
T 2lnj_A          131 LASVTTNRGKLITFDLSTAEDRWDTVKSLFDTVASSFHVY  170 (170)
Confidence            9999999999999999999999999999999999999985

>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3

Probab=97.64  E-value=0.00071  Score=56.39  Aligned_cols=72  Identities=10%  Similarity=0.095  Sum_probs=60.0

Q ss_pred             EEeeeeceeCCeeeEEEEEEEecCCCCCCCCCCCcceEEEEEEEECCEEEEEEeecCcchhhhhchhHHHhhcceeEcCC
Q 022978          195 VLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSISASTLGKQWDEMGPFLEKSVASFHLLPP  274 (289)
Q Consensus       195 ll~a~~r~~dGk~YY~~Ey~v~~~p~~~a~~~e~~RH~La~~tv~~GkLYtl~~qa~EkrW~k~~~~l~~vv~SFrv~~~  274 (289)
                      ++.....+.+|.+--.+||.=+.        ....+|++-++.+.++++|.|+.+++..-|+..++.++.|++||+...+
T Consensus        73 ~~~~~~~~l~g~~a~~~e~~~~~--------~g~~~~Q~q~~~~~~~~~l~~t~t~~~~~~~~~~~~~~~i~~Sf~~~~~  144 (148)
T 1tu1_A           73 LHKRWDINIHGHAAVLLDYQWQR--------EGRDLMLRQVFIERRPAVLITTLTTTPADLPHHEPAWKQAMQTLVPRPT  144 (148)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEE--------TTEEEEEEEEEECCSSSEEEEEEEECGGGHHHHHHHHHHHHHTCEECCC
T ss_pred             EeeeEeEEEcCCcEEEEEEEEcc--------CCEEEEEEEEEEEECCeEEEEEEEcCCCCCHHHHHHHHHHHHhcccCCC
Confidence            34444444588888888888766        7788999999888877999999999999999999999999999998643

>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}

Probab=94.30  E-value=0.2  Score=42.95  Aligned_cols=72  Identities=18%  Similarity=0.162  Sum_probs=54.4

Q ss_pred             EEeeeeceeCCeeeEEEEEEEecCCCCCCCCCCCcceE--EEEEEE-ECCEEEEE--EeecCcchhhhhchhHHHhhcce
Q 022978          195 VLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHY--VASTAE-REGYLYSI--SASTLGKQWDEMGPFLEKSVASF  269 (289)
Q Consensus       195 ll~a~~r~~dGk~YY~~Ey~v~~~p~~~a~~~e~~RH~--La~~tv-~~GkLYtl--~~qa~EkrW~k~~~~l~~vv~SF  269 (289)
                      +++-...+.+|.+-|..||.=..        +..+.|.  +..+.+ .+|..|.+  ++++.+.+-....+.++.|++||
T Consensus        84 ~~~r~~~~~~G~pa~~iey~y~~--------~~~g~~aq~~~~vvve~~~v~~vv~lt~T~~~~q~~~~~~d~q~iv~sl  155 (161)
T 3lyd_A           84 ERGRTETTVDGFPAYHIEYAYRH--------HGTITIAQMITLVEVSHPHAVDIIQLTATCAGDQTADYWDTFRLMHADL  155 (161)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEE--------TTTEEEEEEEEEEEEECSSCEEEEEEEEEEEGGGHHHHHHHHHHHHHTC
T ss_pred             eecccccccCCcccEEEEEEEec--------CCCceEeeEEEEEEEecCCEEEEEEEEEEeccccchHHHHHHHHHhhee
Confidence            33344558899999999999644        5566662  344444 56655555  99999999999999999999999


Q ss_pred             eEcCC
Q 022978          270 HLLPP  274 (289)
Q Consensus       270 rv~~~  274 (289)
                      +|.|-
T Consensus       156 ~v~p~  160 (161)
T 3lyd_A          156 TVQPH  160 (161)
T ss_dssp             EEETT
T ss_pred             EeccC
Confidence            99863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	289
d1v2ba_	171	d.107.1.2 (A:) Oxygen-evolving enhancer protein Ps	1e-24

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 171

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 95.1 bits (236), Expect = 1e-24
 Identities = 34/187 (18%), Positives = 65/187 (34%), Gaps = 31/187 (16%)

Query: 91  NAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIVSERVDIIDNLIISVTI 150
           + +    P          KW  +++ E            R     +    +      V I
Sbjct: 9   DGFKLQIP---------SKWNPNKEVEYPGQVL------RFEDNFDATSNV-----IVAI 48

Query: 151 GPPNVQFLKSKDKSTWNAKDVADSVLSDKSALRVTS-----SQRMAESSVLDAHTSKVDG 205
            P + + +            V   +     + +  S     S  +A ++VL+  T++V G
Sbjct: 49  TPTDKKSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGG 108

Query: 206 EPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSISASTLGKQWDEMG-PFLEK 264
           + Y++   L R +  N G      +H + +    +G LY   A    K+W +    F+E 
Sbjct: 109 KQYYYLSILTRTADGNEGG-----KHQLVTATVNDGKLYICKAQAGDKRWFKGAKKFVEN 163

Query: 265 SVASFHL 271
           +  SF L
Sbjct: 164 TATSFSL 170

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	289
d1v2ba_	171	Oxygen-evolving enhancer protein PsbP {Common toba	100.0
d1tu1a_	144	Hypothetical protein PA0094 {Pseudomonas aeruginos	98.39

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=8.2e-36  Score=255.71  Aligned_cols=165  Identities=21%  Similarity=0.360  Sum_probs=122.7

Q ss_pred             cceeeeCCCceEEeccCCC-CCcceeccccccccccccCCCCCCCCCcceeeec-cccccccceeEEEEeCCchhhhhcc
Q 022978           83 MASFVDEINAYTYLYPMEL-PSKKFLFKWVESRKPERYSSAAPLSPNARLRIVS-ERVDIIDNLIISVTIGPPNVQFLKS  160 (289)
Q Consensus        83 f~~~~D~~dGYsF~YP~~W-~s~e~~~~g~~~r~~D~~~s~apLs~nvrv~iv~-e~~~i~dn~~Vsvs~GPp~~~~l~~  160 (289)
                      |..|.|  |||+|+||++| +..+....|++.+|+|+++..    +|++|.|.+ ++.+|.+       +|+|++.. +.
T Consensus         3 ~~~y~~--dgy~f~~P~~W~~~~~~~~~g~d~~f~d~~~~~----~nv~V~v~p~~~~sl~~-------~G~p~~~~-~~   68 (171)
T d1v2ba_           3 FQTYNG--DGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDAT----SNVIVAITPTDKKSITD-------FGSPEQFL-SQ   68 (171)
T ss_dssp             EEEEEC--SSEEEEEETTCEECCCCCSTTEEEEEEETTEEE----EEEEEEEEECSCSSGGG-------GCSHHHHH-HH
T ss_pred             cccccC--CCEEEECCCCCceecccCCCCceEEEeccccCC----ceEEEEEecCCCcchhh-------ccChHHHH-HH
Confidence            677876  89999999999 444566889999999998832    788888887 7889999       99998644 22


Q ss_pred             cCccccchHHHHHhhhccccc-cccccccccccccEEeeeeceeCCeeeEEEEEEEecCCCCCCCCCCCcceEEEEEEEE
Q 022978          161 KDKSTWNAKDVADSVLSDKSA-LRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAER  239 (289)
Q Consensus       161 ~d~~~~~~~~la~~vLa~~ss-gr~~~g~rv~~a~ll~a~~r~~dGk~YY~~Ey~v~~~p~~~a~~~e~~RH~La~~tv~  239 (289)
                      ..      +.+++..++.+.. ...++++.+++++|++|++++.||++||+|||.+++     .++.+++||+|++++|.
T Consensus        69 v~------~~l~~~~~~~~~~~~~~~~~~~~~~a~v~~a~~~~~~G~~YY~~Ey~~~~-----~~~~~~~rh~l~~~~v~  137 (171)
T d1v2ba_          69 VD------YLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRT-----ADGNEGGKHQLVTATVN  137 (171)
T ss_dssp             TG------GGC------------------CCCEEEEEEEEEEEETTEEEEEEEEEEEC----------CCEEEEEEEEEE
T ss_pred             HH------HHHhhhhhcccccccccccccccceeEEEEeeeeecCCEEEEEEEEEEec-----CCCCCcccEEEEEEEEe
Confidence            11      2233333333321 112245667889999999999999999999999987     55668999999999999


Q ss_pred             CCEEEEEEeecCcchhhhh-chhHHHhhcceeEc
Q 022978          240 EGYLYSISASTLGKQWDEM-GPFLEKSVASFHLL  272 (289)
Q Consensus       240 ~GkLYtl~~qa~EkrW~k~-~~~l~~vv~SFrv~  272 (289)
                      +||||||++|+||++|+++ +++|++|++||+|.
T Consensus       138 ~grLYtl~~~~pe~~w~~~~~~~l~~~v~SF~v~  171 (171)
T d1v2ba_         138 DGKLYICKAQAGDKRWFKGAKKFVENTATSFSLA  171 (171)
T ss_dssp             TTEEEEEEEEEEGGGCSTTTTHHHHHHHHTCEEC
T ss_pred             CCEEEEEEEecCHHHhhhhhHHHHHHHHhceEeC
Confidence            9999999999999999986 56799999999983

>d1tu1a_ d.107.1.3 (A:) Hypothetical protein PA0094 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PA0094-like
domain: Hypothetical protein PA0094
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.39  E-value=1.8e-06  Score=69.48  Aligned_cols=74  Identities=9%  Similarity=0.081  Sum_probs=66.0

Q ss_pred             ccEEeeeeceeCCeeeEEEEEEEecCCCCCCCCCCCcceEEEEEEEECCEEEEEEeecCcchhhhhchhHHHhhcceeEc
Q 022978          193 SSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSISASTLGKQWDEMGPFLEKSVASFHLL  272 (289)
Q Consensus       193 a~ll~a~~r~~dGk~YY~~Ey~v~~~p~~~a~~~e~~RH~La~~tv~~GkLYtl~~qa~EkrW~k~~~~l~~vv~SFrv~  272 (289)
                      -++++...-+.+|.+-+.+||.-+.        .+...|+.-++.+.++++|+|++.++...|+..++.++++++||+..
T Consensus        71 ~~~~~~~~~~l~g~pa~~~~~t~~~--------~~~~v~Q~q~~~~~~~~~~~lt~t~~~~~~~~~~~~~~~il~Sf~p~  142 (144)
T d1tu1a_          71 FKLHKRWDINIHGHAAVLLDYQWQR--------EGRDLMLRQVFIERRPAVLITTLTTTPADLPHHEPAWKQAMQTLVPR  142 (144)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEEE--------TTEEEEEEEEEECCSSSEEEEEEEECGGGHHHHHHHHHHHHHTCEEC
T ss_pred             cEEEeeEecccCCCcEEEEEEEEee--------CCEeEEEEEEEEEeCCCEEEEEEecCCcCCHHHHHHHHHHHHhCccC
Confidence            4677777667799999999999977        67788999999999999999999999999999999999999999987


Q ss_pred             CC
Q 022978          273 PP  274 (289)
Q Consensus       273 ~~  274 (289)
                      |+
T Consensus       143 p~  144 (144)
T d1tu1a_         143 PT  144 (144)
T ss_dssp             CC
T ss_pred             CC
Confidence            64