Citrus Sinensis ID: 022995

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
MKGGKSNKANWSLKSKIELPFVFLACLFFFLAGLLGSSLLSQDVTAARPSARVVESVKDEYKWMPHGQAGDDSVTNIPFQVLSWMPRALYFPNFATPEQCKSIINMAKLNLRPSTLALRKGETVDNTQGIRTSSGVFISAAEDESGTLDLIEEKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQEQYD
cccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEEEccccEEEEcccccHHHHHHHHHHHHccccccEEEcccccEEccccccEEEcccccccccccHHHHHHHHHHHHHHcccccccccccEEEEccccccccccccccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccEEEEEcccEEEEcccccccccccccccccccccccEEEEEEEccccccccc
ccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHcccccccccHHHHHHHcccccccccccccccEEEEEcccEEEEEcccccHHHHHHHHHHHcHcccccEEEcccccccEEEccEEEccccEccccccccHHHHHHHHHHHHHccccccccccEEEEEEccccccccccccccccccccccccEEEEEEEEEcccccccccEcccccccccccccHHHcccccEEccccccEEEEEEcccccccccccccccccEEEccEEEEcEEEEEccccc
mkggksnkanwslkskielpFVFLACLFFFLAGLlgssllsqdvtaarpsarVVESVKDeykwmphgqagddsvtnipfqvlswmpralyfpnfatpeQCKSIINMAklnlrpstlalrkgetvdntqgirtssgvfisaaedesgtlDLIEEKIAKVtmlpringeaFNILRYKIGqkynshydafdpqeygpqksQRVASFLVYLTDleeggetmfpfengmnadgsydyqkciglkvkprqgdgllfysllpngtidptsihgscpvvkgeKWVATKWIRDQEQYD
mkggksnkanwsLKSKIELPFVFLACLFFFLAGLLGSSLLSQDVTAARPSARVVESVKDEYKWMphgqagddsvtNIPFQVLSWMPRALYFPNFATPEQCKSIINMAKLNLRPSTLALrkgetvdntqgirtssgvfisaaedesgtlDLIEEKIAkvtmlpringEAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTsihgscpvvkgekwVATKWIRDQEQYD
MKGGKSNKANWSLKSKIElpfvflaclffflagllgssllSQDVTAARPSARVVESVKDEYKWMPHGQAGDDSVTNIPFQVLSWMPRALYFPNFATPEQCKSIINMAKLNLRPSTLALRKGETVDNTQGIRTSSGVFISAAEDESGTLDLIEEKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQEQYD
**********WSLKSKIELPFVFLACLFFFLAGLLGSSLLSQDVTAARPSARVVESVKDEYKWMPHGQAGDDSVTNIPFQVLSWMPRALYFPNFATPEQCKSIINMAKLNLRPSTLALRKGETVDNTQGIRTSSGVFISAAEDESGTLDLIEEKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAFDPQEY*****QRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVATKWIR******
***************KIELPFVFLACLFFFLAGLLGSSLLS************************HGQAGDDSVTNIPFQVLSWMPRALYFPNFATPEQCKSIINMAKLNLRPS**************GIRTSSGVFISAAEDESGTLDLIEEKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQE***
*********NWSLKSKIELPFVFLACLFFFLAGLLGSSLLSQDVTAARPSARVVESVKDEYKWMPHGQAGDDSVTNIPFQVLSWMPRALYFPNFATPEQCKSIINMAKLNLRPSTLALRKGETVDNTQGIRTSSGVFISAAEDESGTLDLIEEKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQEQYD
*************KSKIELPFVFLACLFFFLAGLLGSSLLSQDVTAARPSARVVESVKDEYKWMPHGQAGDDSVTNIPFQVLSWMPRALYFPNFATPEQCKSIINMAKLNLRPSTLALRKGETVDNTQGIRTSSGVFISAAEDESGTLDLIEEKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQ****
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKGGKSNKANWSLKSKIELPFVFLACLFFFLAGLLGSSLLSQDVTAARPSARVVESVKDEYKWMPHGQAGDDSVTNIPFQVLSWMPRALYFPNFATPEQCKSIINMAKLNLRPSTLALRKGETVDNTQGIRTSSGVFISAAEDESGTLDLIEEKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQEQYD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query289 2.2.26 [Sep-21-2011]
P16924516 Prolyl 4-hydroxylase subu yes no 0.636 0.356 0.271 7e-17
Q60715534 Prolyl 4-hydroxylase subu yes no 0.636 0.344 0.262 3e-16
Q5RAG8534 Prolyl 4-hydroxylase subu yes no 0.636 0.344 0.262 1e-15
P13674534 Prolyl 4-hydroxylase subu yes no 0.636 0.344 0.262 1e-15
Q5UP57242 Putative prolyl 4-hydroxy N/A no 0.737 0.880 0.270 1e-15
P54001534 Prolyl 4-hydroxylase subu no no 0.636 0.344 0.257 2e-15
O15460535 Prolyl 4-hydroxylase subu no no 0.622 0.336 0.261 2e-15
Q1RMU3534 Prolyl 4-hydroxylase subu yes no 0.636 0.344 0.262 2e-15
Q20065539 Prolyl 4-hydroxylase subu yes no 0.667 0.358 0.260 2e-15
Q60716537 Prolyl 4-hydroxylase subu no no 0.622 0.335 0.257 5e-15
>sp|P16924|P4HA1_CHICK Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gallus GN=P4HA1 PE=1 SV=1 Back     alignment and function desciption
 Score = 88.2 bits (217), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 99/206 (48%), Gaps = 22/206 (10%)

Query: 86  PRALYFPNFATPEQCKSIINMAKLNLRPSTLALRKGETVDNTQGIRTSSGVFISAAEDES 145
           PR + F +  + E+ +++  +AK  L  +T+   +   +  T   R S   ++S  E  S
Sbjct: 317 PRIVRFLDIISDEEIETVKELAKPRLSRATVHDPETGKL-TTAHYRVSKSAWLSGYE--S 373

Query: 146 GTLDLIEEKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAFDPQEYGPQKS----QRVA 201
             +  I  +I  +T L     E   +  Y +G +Y  H+D     E    K      R+A
Sbjct: 374 PVVSRINTRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFGRKDEPDAFKELGTGNRIA 433

Query: 202 SFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDP 261
           ++L Y++D+  GG T+FP                +G  V P++G  + +Y+L P+G  D 
Sbjct: 434 TWLFYMSDVSAGGATVFP---------------EVGASVWPKKGTAVFWYNLFPSGEGDY 478

Query: 262 TSIHGSCPVVKGEKWVATKWIRDQEQ 287
           ++ H +CPV+ G KWV+ KW+ ++ Q
Sbjct: 479 STRHAACPVLVGNKWVSNKWLHERGQ 504
Catalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in collagens and other proteins.
Gallus gallus (taxid: 9031)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 2
>sp|Q60715|P4HA1_MOUSE Prolyl 4-hydroxylase subunit alpha-1 OS=Mus musculus GN=P4ha1 PE=2 SV=2 Back     alignment and function description
>sp|Q5RAG8|P4HA1_PONAB Prolyl 4-hydroxylase subunit alpha-1 OS=Pongo abelii GN=P4HA1 PE=2 SV=1 Back     alignment and function description
>sp|P13674|P4HA1_HUMAN Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapiens GN=P4HA1 PE=1 SV=2 Back     alignment and function description
>sp|Q5UP57|P4H_MIMIV Putative prolyl 4-hydroxylase OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L593 PE=1 SV=1 Back     alignment and function description
>sp|P54001|P4HA1_RAT Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1 PE=2 SV=2 Back     alignment and function description
>sp|O15460|P4HA2_HUMAN Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapiens GN=P4HA2 PE=1 SV=1 Back     alignment and function description
>sp|Q1RMU3|P4HA1_BOVIN Prolyl 4-hydroxylase subunit alpha-1 OS=Bos taurus GN=P4HA1 PE=1 SV=1 Back     alignment and function description
>sp|Q20065|P4HA2_CAEEL Prolyl 4-hydroxylase subunit alpha-2 OS=Caenorhabditis elegans GN=phy-2 PE=1 SV=1 Back     alignment and function description
>sp|Q60716|P4HA2_MOUSE Prolyl 4-hydroxylase subunit alpha-2 OS=Mus musculus GN=P4ha2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query289
449448264294 PREDICTED: prolyl 4-hydroxylase subunit 0.989 0.972 0.733 1e-126
449511009294 PREDICTED: LOW QUALITY PROTEIN: prolyl 4 0.989 0.972 0.730 1e-126
255584898290 prolyl 4-hydroxylase alpha subunit, puta 0.986 0.982 0.726 1e-122
357476355297 Prolyl 4-hydroxylase subunit alpha-1 [Me 0.972 0.946 0.693 1e-118
388505024297 unknown [Medicago truncatula] 0.972 0.946 0.686 1e-116
356563543293 PREDICTED: putative prolyl 4-hydroxylase 0.989 0.976 0.707 1e-115
255647903293 unknown [Glycine max] 0.989 0.976 0.707 1e-115
225438938285 PREDICTED: prolyl 4-hydroxylase subunit 0.968 0.982 0.723 1e-113
363807682293 uncharacterized protein LOC100775302 [Gl 0.986 0.972 0.703 1e-113
225428938284 PREDICTED: prolyl 4-hydroxylase subunit 0.982 1.0 0.681 1e-112
>gi|449448264|ref|XP_004141886.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 212/289 (73%), Positives = 251/289 (86%), Gaps = 3/289 (1%)

Query: 4   GKSNKANWSLKSKIELP-FVFLACLFFFLAGLLGSSLLSQDVTAARPSARVVESVKD--E 60
           GKS ++NWSL+SK+ LP  +F+ CLF FLAG  GS+LLSQDV   RP AR+++S  D  E
Sbjct: 3   GKSGRSNWSLRSKLGLPALIFVLCLFCFLAGFFGSTLLSQDVDDDRPRARLLQSASDVTE 62

Query: 61  YKWMPHGQAGDDSVTNIPFQVLSWMPRALYFPNFATPEQCKSIINMAKLNLRPSTLALRK 120
           +  M  G+ GDDS+++IPFQVLSW PRALYFP FAT EQC+SI+N+AK  LRPSTLALRK
Sbjct: 63  FDLMSSGENGDDSISSIPFQVLSWRPRALYFPKFATAEQCQSIVNLAKPKLRPSTLALRK 122

Query: 121 GETVDNTQGIRTSSGVFISAAEDESGTLDLIEEKIAKVTMLPRINGEAFNILRYKIGQKY 180
           GET ++T+G+RTSSGVF SA+EDESGTL +IEEKIA+ TM+PR +GEA+NILRY+IGQKY
Sbjct: 123 GETAESTKGVRTSSGVFFSASEDESGTLGVIEEKIARATMIPRTHGEAYNILRYEIGQKY 182

Query: 181 NSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKV 240
           NSHYDAF P EYGPQKSQRVASFL+YLTD+EEGGETMFPFENG+N DG+Y++Q CIGLKV
Sbjct: 183 NSHYDAFKPSEYGPQKSQRVASFLLYLTDVEEGGETMFPFENGLNMDGTYNFQTCIGLKV 242

Query: 241 KPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQEQYD 289
           KPRQGDGLLFYS+ PNGTIDPTS+HGSCPV+KG+KWVATKWIRDQ Q D
Sbjct: 243 KPRQGDGLLFYSVFPNGTIDPTSLHGSCPVIKGQKWVATKWIRDQMQED 291

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449511009|ref|XP_004163837.1| PREDICTED: LOW QUALITY PROTEIN: prolyl 4-hydroxylase subunit alpha-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255584898|ref|XP_002533164.1| prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis] gi|223527036|gb|EEF29223.1| prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357476355|ref|XP_003608463.1| Prolyl 4-hydroxylase subunit alpha-1 [Medicago truncatula] gi|355509518|gb|AES90660.1| Prolyl 4-hydroxylase subunit alpha-1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|388505024|gb|AFK40578.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|356563543|ref|XP_003550021.1| PREDICTED: putative prolyl 4-hydroxylase-like [Glycine max] Back     alignment and taxonomy information
>gi|255647903|gb|ACU24410.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|225438938|ref|XP_002279411.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1 [Vitis vinifera] gi|296087348|emb|CBI33722.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|363807682|ref|NP_001242420.1| uncharacterized protein LOC100775302 [Glycine max] gi|255641811|gb|ACU21174.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|225428938|ref|XP_002262952.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1 [Vitis vinifera] gi|296083079|emb|CBI22483.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query289
TAIR|locus:2118889288 AT4G33910 [Arabidopsis thalian 0.854 0.857 0.684 3.3e-95
TAIR|locus:1005716656274 P4H13 "prolyl 4-hydroxylase 13 0.826 0.872 0.612 1.3e-77
TAIR|locus:2156852289 AT5G66060 [Arabidopsis thalian 0.730 0.730 0.432 1.2e-44
TAIR|locus:2012903287 AT1G20270 [Arabidopsis thalian 0.685 0.689 0.440 1.5e-42
TAIR|locus:2125329290 AT4G35810 [Arabidopsis thalian 0.698 0.696 0.403 6.6e-42
TAIR|locus:2827906291 P4H5 "prolyl 4-hydroxylase 5" 0.702 0.697 0.415 2.2e-41
TAIR|locus:2088892288 AT3G28490 [Arabidopsis thalian 0.681 0.684 0.436 2.6e-40
TAIR|locus:2144960298 AT5G18900 [Arabidopsis thalian 0.681 0.661 0.408 1e-36
TAIR|locus:2081106299 P4H2 "prolyl 4-hydroxylase 2" 0.709 0.685 0.401 1.3e-36
TAIR|locus:2041001283 AT-P4H-1 "P4H isoform 1" [Arab 0.778 0.795 0.373 3.5e-36
TAIR|locus:2118889 AT4G33910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 947 (338.4 bits), Expect = 3.3e-95, P = 3.3e-95
 Identities = 171/250 (68%), Positives = 210/250 (84%)

Query:    41 SQDVTAARPSARV---VESVKDEYKWMPHGQAGDDSVTNIPFQVLSWMPRALYFPNFATP 97
             SQ+V   +P  R+   VE+ ++E   MPHG  G++S+ +IPFQVLSW PRA+YFPNFAT 
Sbjct:    37 SQNVPRVKPRLRMLDMVENGEEEASSMPHGVTGEESIGSIPFQVLSWRPRAIYFPNFATA 96

Query:    98 EQCKSIINMAKLNLRPSTLALRKGETVDNTQGIRTSSGVFISAAEDESGTLDLIEEKIAK 157
             EQC++II  AK+NL+PS LALRKGET +NT+G RTSSG FISA+E+ +G LD +E KIA+
Sbjct:    97 EQCQAIIERAKVNLKPSALALRKGETAENTKGTRTSSGTFISASEESTGALDFVERKIAR 156

Query:   158 VTMLPRINGEAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETM 217
              TM+PR +GE+FNILRY++GQKY+SHYD F+P EYGPQ SQR+ASFL+YL+D+EEGGETM
Sbjct:   157 ATMIPRSHGESFNILRYELGQKYDSHYDVFNPTEYGPQSSQRIASFLLYLSDVEEGGETM 216

Query:   218 FPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWV 277
             FPFENG N    YDY++CIGLKVKPR+GDGLLFYS+ PNGTID TS+HGSCPV KGEKWV
Sbjct:   217 FPFENGSNMGIGYDYKQCIGLKVKPRKGDGLLFYSVFPNGTIDQTSLHGSCPVTKGEKWV 276

Query:   278 ATKWIRDQEQ 287
             ATKWIRDQ+Q
Sbjct:   277 ATKWIRDQDQ 286
GO:0005506 "iron ion binding" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS
GO:0031418 "L-ascorbic acid binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0031348 "negative regulation of defense response" evidence=RCA
TAIR|locus:1005716656 P4H13 "prolyl 4-hydroxylase 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156852 AT5G66060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012903 AT1G20270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125329 AT4G35810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2827906 P4H5 "prolyl 4-hydroxylase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088892 AT3G28490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144960 AT5G18900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081106 P4H2 "prolyl 4-hydroxylase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2041001 AT-P4H-1 "P4H isoform 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00019631001
SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (285 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00038542001
RecName- Full=Proline iminopeptidase; EC=3.4.11.5; (331 aa)
     •  0.899
GSVIVG00038134001
SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (500 aa)
     •  0.899
GSVIVG00000690001
RecName- Full=Pyrroline-5-carboxylate reductase; EC=1.5.1.2; (276 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query289
PLN00052310 PLN00052, PLN00052, prolyl 4-hydroxylase; Provisio 4e-49
smart00702165 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subun 7e-36
pfam1364093 pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase su 4e-06
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 6e-05
PRK05467226 PRK05467, PRK05467, Fe(II)-dependent oxygenase sup 1e-04
>gnl|CDD|177683 PLN00052, PLN00052, prolyl 4-hydroxylase; Provisional Back     alignment and domain information 
 Score =  165 bits (418), Expect = 4e-49
 Identities = 92/230 (40%), Positives = 132/230 (57%), Gaps = 17/230 (7%)

Query: 67  GQAGDDSVTNI----PF-----QVLSWMPRALYFPNFATPEQCKSIINMAKLNLRPSTLA 117
           G+AGDD V  +    PF     + +SW PR   +  F +  +C  ++ +AK  ++ S +A
Sbjct: 26  GEAGDDGVGAVAAAPPFNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVA 85

Query: 118 LRK-GETVDNTQGIRTSSGVFISAAEDESGTLDLIEEKIAKVTMLPRINGEAFNILRYKI 176
             K G++V     +RTSSG+F+   +D    +  IEE+IA  T LP  N E   ILRY+ 
Sbjct: 86  DNKSGKSV--MSEVRTSSGMFLDKRQDP--VVSRIEERIAAWTFLPEENAENIQILRYEH 141

Query: 177 GQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYD-YQKC 235
           GQKY  H+D F  +        R A+ L+YL+ +++GGET+FP   G       D + +C
Sbjct: 142 GQKYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGETVFPNAEGWENQPKDDTFSEC 201

Query: 236 I--GLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVATKWIR 283
              GL VKP +GD +LF+SL  +G  DP S+HGSCPV++GEKW A KWI 
Sbjct: 202 AHKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGSCPVIEGEKWSAPKWIH 251

Length = 310
>gnl|CDD|214780 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>gnl|CDD|222280 pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|235483 PRK05467, PRK05467, Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 289
PLN00052310 prolyl 4-hydroxylase; Provisional 100.0
KOG1591289 consensus Prolyl 4-hydroxylase alpha subunit [Amin 100.0
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 100.0
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 99.95
PHA02813 354 hypothetical protein; Provisional 99.72
PHA02869 418 C4L/C10L-like gene family protein; Provisional 99.7
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 99.64
COG3128229 PiuC Uncharacterized iron-regulated protein [Funct 99.49
KOG3710280 consensus EGL-Nine (EGLN) protein [Signal transduc 98.77
PF03336 339 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR 98.61
PF1366170 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily 98.54
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 98.44
COG3751252 EGL-9 Predicted proline hydroxylase [Posttranslati 98.1
TIGR02408277 ectoine_ThpD ectoine hydroxylase. Both ectoine and 97.87
PHA02866 333 Hypothetical protein; Provisional 97.83
PF09859173 Oxygenase-NA: Oxygenase, catalysing oxidative meth 97.69
PF05721211 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: 97.6
PF13759101 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB 97.44
TIGR02466201 conserved hypothetical protein. This family consis 97.35
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 97.07
TIGR01762288 chlorin-enz chlorinating enzymes. This model repre 97.01
KOG3844 476 consensus Predicted component of NuA3 histone acet 96.87
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 96.14
PHA02923 315 hypothetical protein; Provisional 95.91
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 95.44
KOG3200224 consensus Uncharacterized conserved protein [Funct 92.87
COG3826236 Uncharacterized protein conserved in bacteria [Fun 90.81
PF06822 266 DUF1235: Protein of unknown function (DUF1235); In 87.73
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 87.25
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 84.71
PLN02485329 oxidoreductase 84.48
PHA02985 271 hypothetical protein; Provisional 80.24
>PLN00052 prolyl 4-hydroxylase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.9e-56  Score=412.53  Aligned_cols=250  Identities=36%  Similarity=0.617  Sum_probs=201.9

Q ss_pred             hhHHHHHHHHHHHHhhhccccccCCcCCCCCchhhhhhccccCCcCCCCCCCCCcccccccEEeecCCcEEEecCCCCHH
Q 022995           19 LPFVFLACLFFFLAGLLGSSLLSQDVTAARPSARVVESVKDEYKWMPHGQAGDDSVTNIPFQVLSWMPRALYFPNFATPE   98 (289)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ls~~P~i~~i~nfLs~e   98 (289)
                      |..++|++++++-+-+....|+--                ++......+..+.+.+....+++|||+|+|++|+||||++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~kve~lS~~P~i~~~~nfLs~~   66 (310)
T PLN00052          3 LRGALLALALLLAATAVVPLLLLG----------------EAGDDGVGAVAAAPPFNASRVKAVSWQPRIFVYKGFLSDA   66 (310)
T ss_pred             hhhhHHHHHHHHHHHHHhhheeee----------------ccCCcccccccCCCCcCCceEEEecCCCCEEEECCcCCHH
Confidence            334566666666566665555421                0111122233455677788899999999999999999999


Q ss_pred             HHHHHHHHhhcCCccceeeecC-CceeecccceeecceEEecCCCChhHHHHHHHHHHHHHcCCCCcccccceeeecCCC
Q 022995           99 QCKSIINMAKLNLRPSTLALRK-GETVDNTQGIRTSSGVFISAAEDESGTLDLIEEKIAKVTMLPRINGEAFNILRYKIG  177 (289)
Q Consensus        99 EC~~Li~~a~~~l~~s~v~~~~-G~~~~~~~~~RtS~~~~l~~~~~~~~i~~~I~~Ri~~~~g~p~~~~E~lqv~rY~~G  177 (289)
                      ||++||+++++.+++|++++.. |++  ..+.+|||+++|+...++  +++++|++||++++++|.++.|++||+||++|
T Consensus        67 Ecd~Li~la~~~l~~S~v~~~~~g~~--~~s~~RTS~~~~l~~~~d--pvv~~I~~Ria~~t~lp~~~~E~lQVlrY~~G  142 (310)
T PLN00052         67 ECDHLVKLAKKKIQRSMVADNKSGKS--VMSEVRTSSGMFLDKRQD--PVVSRIEERIAAWTFLPEENAENIQILRYEHG  142 (310)
T ss_pred             HHHHHHHhcccccccceeecCCCCcc--ccCCCEEecceeecCCCC--HHHHHHHHHHHHHhCCCcccCcceEEEecCCC
Confidence            9999999999999999987643 332  357799999999987654  69999999999999999999999999999999


Q ss_pred             CccccCcccCCCCCCCCCCCceEEEEEEecCCCCCCcceeccCCCCCC-CCCCCCcccc--cceEEecccccEEEEeecC
Q 022995          178 QKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMN-ADGSYDYQKC--IGLKVKPRQGDGLLFYSLL  254 (289)
Q Consensus       178 ~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNdv~eGGeT~Fp~~~~~~-~~~~~~~~~~--~~~~V~P~~G~allF~n~~  254 (289)
                      |+|++|+|++........+++|++|+|+||||+++||||+||...... ...+..+++|  .+++|+|++|+||+|+|++
T Consensus       143 q~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLndv~~GGeT~FP~~~~~~~~~~~~~~s~c~~~gl~VkPkkG~ALlF~nl~  222 (310)
T PLN00052        143 QKYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGETVFPNAEGWENQPKDDTFSECAHKGLAVKPVKGDAVLFFSLH  222 (310)
T ss_pred             CCCCCCCCccccccccccCCceeEEEEEEeccCCCCCceecCCcccccccccccchhhhhcCCeEeccCcceEEEEeccC
Confidence            999999999875332234689999999999999999999999864211 1122345566  4899999999999999999


Q ss_pred             CCCCCCCCCcccccCcccceEEEEEecccccccc
Q 022995          255 PNGTIDPTSIHGSCPVVKGEKWVATKWIRDQEQY  288 (289)
Q Consensus       255 ~~g~~D~~~~H~g~PV~~G~K~v~~~W~~~~~~~  288 (289)
                      +||++|+.++|+||||++|+||++|+|||.+.++
T Consensus       223 ~dG~~D~~SlHagcPVi~G~Kw~atkWi~~~~~~  256 (310)
T PLN00052        223 IDGVPDPLSLHGSCPVIEGEKWSAPKWIHIRSYE  256 (310)
T ss_pred             CCCCCCcccccCCCeeecCeEEEEEEeeeccccc
Confidence            9999999999999999999999999999998764

>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism] Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PHA02813 hypothetical protein; Provisional Back     alignment and domain information
>PHA02869 C4L/C10L-like gene family protein; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown] Back     alignment and domain information
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms] Back     alignment and domain information
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae Back     alignment and domain information
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02408 ectoine_ThpD ectoine hydroxylase Back     alignment and domain information
>PHA02866 Hypothetical protein; Provisional Back     alignment and domain information
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases Back     alignment and domain information
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>TIGR01762 chlorin-enz chlorinating enzymes Back     alignment and domain information
>KOG3844 consensus Predicted component of NuA3 histone acetyltransferase complex [Chromatin structure and dynamics] Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>PHA02923 hypothetical protein; Provisional Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>KOG3200 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF06822 DUF1235: Protein of unknown function (DUF1235); InterPro: IPR009641 This family contains a number of poxviral proteins, which include Vaccinia virus, A37, the function of which is unknown Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PHA02985 hypothetical protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query289
2jig_A224 Crystal Structure Of Chlamydomonas Reinhardtii Prol 2e-44
3gze_A225 Algal Prolyl 4-Hydroxylase Complexed With Zinc And 2e-44
2jij_A233 Crystal Structure Of The Apo Form Of Chlamydomonas 2e-44
2v4a_A233 Crystal Structure Of The Semet-Labeled Prolyl-4 Hyd 1e-42
3itq_A216 Crystal Structure Of A Prolyl 4-Hydroxylase From Ba 8e-28
>pdb|2JIG|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4 Hydroxylase Type I Complexed With Zinc And Pyridine-2,4- Dicarboxylate Length = 224 Back     alignment and structure 
Iteration: 1

 Score =  176 bits (445), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 95/208 (45%), Positives = 130/208 (62%), Gaps = 13/208 (6%)
Query: 82  LSWMPRALYFPNFATPEQCKSIINMAKLNL-RPSTLALRKGETVDNTQGIRTSSGVFISA 140
           LSW PRA    NF + E+C  I+  A+  + + S +    G++VD+   IRTS+G + + 
Sbjct: 16  LSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSE--IRTSTGTWFAK 73
Query: 141 AEDESGTLDLIEEKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAF-DPQEYGPQKS-Q 198
            ED    +  IE+++A+VTM+P  N E   +L Y  GQKY  HYD F DP   GP+   Q
Sbjct: 74  GEDS--VISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQ 131
Query: 199 RVASFLVYLTDLEEGGETMFP-FENGMNADGSYDYQKCI--GLKVKPRQGDGLLFYSLLP 255
           RV + L+YLT +EEGGET+ P  E  +  DG   + +C   GL VKP +GD L+FYSL P
Sbjct: 132 RVVTMLMYLTTVEEGGETVLPNAEQKVTGDG---WSECAKRGLAVKPIKGDALMFYSLKP 188
Query: 256 NGTIDPTSIHGSCPVVKGEKWVATKWIR 283
           +G+ DP S+HGSCP +KG+KW ATKWI 
Sbjct: 189 DGSNDPASLHGSCPTLKGDKWSATKWIH 216
>pdb|3GZE|A Chain A, Algal Prolyl 4-Hydroxylase Complexed With Zinc And (Ser-Pro)5 Peptide Substrate Length = 225 Back     alignment and structure
>pdb|2JIJ|A Chain A, Crystal Structure Of The Apo Form Of Chlamydomonas Reinhardtii Prolyl-4 Hydroxylase Type I Length = 233 Back     alignment and structure
>pdb|2V4A|A Chain A, Crystal Structure Of The Semet-Labeled Prolyl-4 Hydroxylase (P4h) Type I From Green Algae Chlamydomonas Reinhardtii. Length = 233 Back     alignment and structure
>pdb|3ITQ|A Chain A, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus Anthracis Length = 216 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query289
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 3e-78
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 2e-71
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 5e-11
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 7e-07
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Length = 224 Back     alignment and structure
 Score =  235 bits (602), Expect = 3e-78
 Identities = 84/208 (40%), Positives = 118/208 (56%), Gaps = 5/208 (2%)

Query: 81  VLSWMPRALYFPNFATPEQCKSIINMAKLNLRPSTLALRKGETVDNTQGIRTSSGVFISA 140
            LSW PRA    NF + E+C  I+  A+  +  S++   +     +++ IRTS+G + + 
Sbjct: 15  HLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSE-IRTSTGTWFAK 73

Query: 141 AEDESGTLDLIEEKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAFDPQEYGPQK--SQ 198
            ED    +  IE+++A+VTM+P  N E   +L Y  GQKY  HYD F        +   Q
Sbjct: 74  GEDS--VISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQ 131

Query: 199 RVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGT 258
           RV + L+YLT +EEGGET+ P          +      GL VKP +GD L+FYSL P+G+
Sbjct: 132 RVVTMLMYLTTVEEGGETVLPNAEQKVTGDGWSECAKRGLAVKPIKGDALMFYSLKPDGS 191

Query: 259 IDPTSIHGSCPVVKGEKWVATKWIRDQE 286
            DP S+HGSCP +KG+KW ATKWI    
Sbjct: 192 NDPASLHGSCPTLKGDKWSATKWIHVAP 219
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Length = 216 Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Length = 243 Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Length = 247 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query289
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 100.0
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 99.98
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 99.91
3kt7_A 633 PKHD-type hydroxylase TPA1; double-stranded beta h 98.99
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 98.6
2fct_A313 Syringomycin biosynthesis enzyme 2; mononuclear ir 97.71
2rdq_A288 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II 97.71
2a1x_A308 Phytanoyl-COA dioxygenase; beta jelly roll, double 97.62
3gja_A319 CYTC3; halogenase, beta barrel, biosynthetic prote 96.94
3emr_A310 ECTD; double stranded beta helix, oxidoreductase; 96.88
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 96.66
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 96.5
3nnf_A344 CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependen 96.47
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 95.94
2opw_A291 Phyhd1 protein; double-stranded beta helix, oxygen 95.88
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 95.68
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 82.55
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
Probab=100.00  E-value=3.7e-50  Score=356.88  Aligned_cols=205  Identities=42%  Similarity=0.758  Sum_probs=177.8

Q ss_pred             cccEEeecCCcEEEecCCCCHHHHHHHHHHhhcCCccceeeecC-CceeecccceeecceEEecCCCChhHHHHHHHHHH
Q 022995           77 IPFQVLSWMPRALYFPNFATPEQCKSIINMAKLNLRPSTLALRK-GETVDNTQGIRTSSGVFISAAEDESGTLDLIEEKI  155 (289)
Q Consensus        77 ~p~~~ls~~P~i~~i~nfLs~eEC~~Li~~a~~~l~~s~v~~~~-G~~~~~~~~~RtS~~~~l~~~~~~~~i~~~I~~Ri  155 (289)
                      ..+++||++|+|++|+||||++||++||+++++.+++|++.... |+.  ..+.+|+|+.+|+...++  +++++|++||
T Consensus        11 ~k~e~ls~~P~i~~~~~fLs~~Ec~~li~~~~~~~~~s~v~~~~~g~~--~~~~~R~s~~~~l~~~~~--~~~~~i~~ri   86 (224)
T 2jig_A           11 GEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKS--VDSEIRTSTGTWFAKGED--SVISKIEKRV   86 (224)
T ss_dssp             CCEEEEETTTTEEEETTCSCHHHHHHHHHHHGGGCEECEEEETTTTEE--EECSSBCSEEEECCTTCS--HHHHHHHHHH
T ss_pred             cceEEEeCCCCEEEEcccCCHHHHHHHHHHhhccCeeeeeecCCCCcc--cccCCEEEeeeEecCCCC--HHHHHHHHHH
Confidence            34699999999999999999999999999999999999987643 332  356799999999987543  6899999999


Q ss_pred             HHHcCCCCcccccceeeecCCCCccccCcccCCCCCCC--CCCCceEEEEEEecCCCCCCcceeccCCCCCCCCCCCCcc
Q 022995          156 AKVTMLPRINGEAFNILRYKIGQKYNSHYDAFDPQEYG--PQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQ  233 (289)
Q Consensus       156 ~~~~g~p~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~--~~~~~R~~T~liYLNdv~eGGeT~Fp~~~~~~~~~~~~~~  233 (289)
                      ++++++|...+|++||+||++||+|++|+|++......  ...++|++|+|+||||+++||||+||.....  ..++.++
T Consensus        87 ~~~~gl~~~~~e~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~~~--~~~~~~~  164 (224)
T 2jig_A           87 AQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQRVVTMLMYLTTVEEGGETVLPNAEQK--VTGDGWS  164 (224)
T ss_dssp             HHHHTCCGGGBCCCEEEEEETTCCEEEECCSSCCTTSSSCCCCSCEEEEEEEECSCCSEECCEEETTSSSC--CCSTTSC
T ss_pred             HHHhCCCcccccceEEEecCCCccccCcccCCCCccccccccCCCeEEEEEEEecCCCCCCceeCCCcccc--ccccccc
Confidence            99999999999999999999999999999998653211  2357999999999999999999999976422  2234556


Q ss_pred             cc--cceEEecccccEEEEeecCCCCCCCCCCcccccCcccceEEEEEeccccccc
Q 022995          234 KC--IGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQEQ  287 (289)
Q Consensus       234 ~~--~~~~V~P~~G~allF~n~~~~g~~D~~~~H~g~PV~~G~K~v~~~W~~~~~~  287 (289)
                      +|  .+++|+|++|+||+|+|+.+||++|.+++|+||||++|+||++++||+.++.
T Consensus       165 ~c~~~~~~V~P~~G~al~f~~~~~~g~~d~~~lH~~~PV~~G~K~~~~~Wi~~~~~  220 (224)
T 2jig_A          165 ECAKRGLAVKPIKGDALMFYSLKPDGSNDPASLHGSCPTLKGDKWSATKWIHVAPI  220 (224)
T ss_dssp             TTGGGSEEECCCTTCEEEEESBCTTSCBCGGGCEEECCEEESEEEEEEEEEESSCC
T ss_pred             ccccCceEEecccCcEEEEEeeCCCCCCCCCCcccCCccccceEEEEEEeEEcCCc
Confidence            66  4899999999999999999999999999999999999999999999998765
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin, halogenase, biosynthetic protein; HET: DSU AKG; 1.60A {Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A* 2fcv_A* Back     alignment and structure
>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded beta-helix, structural GENO structural genomics consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo sapiens} SCOP: b.82.2.9 Back     alignment and structure
>3gja_A CYTC3; halogenase, beta barrel, biosynthetic protein; 2.20A {Streptomyces} PDB: 3gjb_A* Back     alignment and structure
>3emr_A ECTD; double stranded beta helix, oxidoreductase; HET: MSE; 1.85A {Virgibacillus salexigens} Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>3nnf_A CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependent enzymes, catal cryptic chlorination, biosynthetic protein; HET: AKG; 2.20A {Lyngbya majuscula} PDB: 3nnj_A 3nnl_A* 3nnm_A Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure
>2opw_A Phyhd1 protein; double-stranded beta helix, oxygenase, structural GE structural genomics consortium, SGC, oxidoreductase; 1.90A {Homo sapiens} PDB: 3obz_A* Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query289
d2fcta1308 Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudom 97.82
d2a1xa1296 Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapie 97.77
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 96.59
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 96.47
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 86.31
>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: PhyH-like
domain: Syringomycin biosynthesis enzyme 2, SyrB2
species: Pseudomonas syringae pv. syringae [TaxId: 321]

Probab=97.82  E-value=5e-05  Score=66.39  Aligned_cols=123  Identities=15%  Similarity=0.151  Sum_probs=67.9

Q ss_pred             HHHHHHHHcCCCCcccccceeeecCCCCccccCcccCCCCCCC--------CCCCceEEEEEEecCCCC-CCcceec-cC
Q 022995          151 IEEKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAFDPQEYG--------PQKSQRVASFLVYLTDLE-EGGETMF-PF  220 (289)
Q Consensus       151 I~~Ri~~~~g~p~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~--------~~~~~R~~T~liYLNdv~-eGGeT~F-p~  220 (289)
                      |-+.++.++|-+.......-+.+...+..+.+|.|.......+        .......+|+.|+|.|+. +.|.+.| |.
T Consensus        82 il~~v~~llG~~~~~~~~~~~~k~p~~~~~~wHqD~~y~~~~~~~~~~~~~~~~~~~~vtvwiaL~D~~~enG~l~viPG  161 (308)
T d2fcta1          82 ICDRVESILGPNVLCWRTEFFPKYPGDEGTDWHQADTFANASGKPQIIWPENEEFGGTITVWTAFTDANIANGCLQFIPG  161 (308)
T ss_dssp             HHHHHHHHHCSCEEEEEEEEEEECTTCCEECCBCCSSSCTTTSSCSEECCTTSCCCSCEEEEEESSCBCTTBTCEEEETT
T ss_pred             hhhHHHHhhcccceeeecccccccccccccccccccccccCCCCcccccCCCCCCCceEEEEEecccccccceeEEEeeC
Confidence            3445556666432211112233444455688999986432110        112346899999999984 4566655 53


Q ss_pred             CCCCCC-C------------CC-----------------------CCcccccceEEecccccEEEEeecCCCCCCCCCCc
Q 022995          221 ENGMNA-D------------GS-----------------------YDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSI  264 (289)
Q Consensus       221 ~~~~~~-~------------~~-----------------------~~~~~~~~~~V~P~~G~allF~n~~~~g~~D~~~~  264 (289)
                      .--... .            ..                       ....+...+.+.-++|++++|..         .++
T Consensus       162 SHk~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~lkaGdvlif~~---------~l~  232 (308)
T d2fcta1         162 TQNSMNYDETKRMTYEPDANNSVVKDGVRRGFFGYDYRQLQIDENWKPDEASAVPMQMKAGQFIIFWS---------TLM  232 (308)
T ss_dssp             CTTSCCBCTTSCCCCCTTTCSSCEETTEEEEBTTBCGGGGBSSTTCCCCGGGCEEECBCTTEEEEEET---------TSE
T ss_pred             CccCCccccccccccCcccccccccccccccccccccccccccccccccccceEEEeeCCCeEEEECC---------Ccc
Confidence            221000 0            00                       00111234667778999999964         899


Q ss_pred             ccccCcc---cceEEEEEecc
Q 022995          265 HGSCPVV---KGEKWVATKWI  282 (289)
Q Consensus       265 H~g~PV~---~G~K~v~~~W~  282 (289)
                      |++.|-.   .-.+++++..+
T Consensus       233 HgS~pN~~~S~~~R~~~~~rY  253 (308)
T d2fcta1         233 HASYPHSGESQEMRMGFASRY  253 (308)
T ss_dssp             EEECCBCSSSSSCEEEEEEEE
T ss_pred             ccCCCCCCCCCCceEEEEEEE
Confidence            9999975   23466665433
>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure