Citrus Sinensis ID: 023005

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
Protein Sequence
MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINSTTQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLNHSEELLENGGIESLFGTKDMSAADSNCQGAVAAEVSYLILSCFIMCTQS
Secondary Structure (PSIPRED)
cccccccccccccEEEEccccccccHHHHHHHHcccccccccEEEcccccccccccEEccccccccccccccccccccccccccccEEEEccccccccHHHHHHHcccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccEEEccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEEccHHHHHHHHHHHHHHHHHHHHcccccEHHHHHccccEEEEEHHHHHHHHHHcccHcccccHHHHccccEEEEcccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccHHHHHHcccccHHHccccccccccccccHHHcccccEEEcEEEccccc
Coil and Loop (DISEMBL)
mgymcdfcgdqrsivycrsdaaclclscdRNVHLANALSKRHSRTLLcercnsqpalVRCAEERVSLCqncdwighgtstsasshkrqtincysgcpsaselSSIWSFvldfpsggesacEQELGLmsitdnsiknswgpnedsisqnaagggveandvcdadksnvrvgatsvpginsttqnrdqihgsannpplpklccsatkdlafcedddlyedfnmdemdlnFENYEELFGVTLNHSeellenggieslfgtkdmsaadsnCQGAVAAEVSYLILSCFIMCTQS
Flexible Loop (DISEMBL)
MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGtstsasshkrqTINCYSGCPSASELSSIWSFVLDFPSGGESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVgatsvpginsttqnrDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLNHSEELLENGGIESLFGTKDMSAADSNCQGAVAAEVSYLILSCFIMCTQS
Low Complexity Region (SEG)
MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINSTTQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLNHSEELLENGGIESLFGTKDMSAADSNCQGAVAAEVSYLILSCFIMCTQS
Disordered region (IsUnstruct)
**YMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGT*********QTINCYSGCPSASELSSIWSFVLDFPSGG***C***LGL***********************************************************************KLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLNHSEELLENGGIESLFGTKDMSAADSNCQGAVAAEVSYLILSCFIMC***
Disordered Region (DISOPRED)
MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGH*********KRQTINCYSGCPSASELSSI*********************************************************************************************************EDDDLYEDFNMDEMDLNFENYEELFGVTLNHSEELLENGGIE*L****************************FIMC***
Disordered Region (DISEMBL)
MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHG***********TINCYSGCPSASELSSIWSFVLDFPSGGESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINSTTQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLNHSEELLENGGIESLFGTKDMSAADSNCQGAVAAEVSYLILSCFIMCTQS
Disordered Region (DISPRO)
**YMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDF********************************************N******KSNVRVGATSVPGINST*QNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLNHSEELLENGGIESLFGTKDMSAADSNCQGAVAAEVSYLILSCFIMCT**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINSTTQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLNHSEELLENGGIESLFGTKDMSAADSNCQGAVAAEVSYLILSCFIMCTQS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	289	2.2.26 [Sep-21-2011]
Q9SSE5	372	Zinc finger protein CONST	yes	no	0.747	0.580	0.556	2e-74
Q9LUA9	373	Zinc finger protein CONST	no	no	0.826	0.640	0.532	2e-67
O23379	330	Putative zinc finger prot	no	no	0.377	0.330	0.504	6e-28
Q9LJ44	364	Zinc finger protein CONST	no	no	0.394	0.313	0.474	1e-27
O22800	402	Zinc finger protein CONST	no	no	0.366	0.263	0.443	3e-26
Q9C7E8	433	Zinc finger protein CONST	no	no	0.435	0.290	0.414	5e-26
Q9C9F4	356	Putative zinc finger prot	no	no	0.377	0.306	0.455	3e-24
O82256	332	Zinc finger protein CONST	no	no	0.346	0.301	0.470	2e-22
Q940T9	362	Zinc finger protein CONST	no	no	0.311	0.248	0.422	4e-15
Q9SK53	294	Zinc finger protein CONST	no	no	0.366	0.360	0.383	4e-13

>sp|Q9SSE5|COL9_ARATH Zinc finger protein CONSTANS-LIKE 9 OS=Arabidopsis thaliana GN=COL9 PE=2 SV=1

 Score =  279 bits (713), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 147/264 (55%), Positives = 175/264 (66%), Gaps = 48/264 (18%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGYMCDFCG+QRS+VYCRSDAACLCLSCDR+VH ANALSKRHSRTL+CERCN+QPA VRC
Sbjct: 1   MGYMCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLVCERCNAQPATVRC 60

Query: 61  AEERVSLCQNCDWIGH---------GTSTSASSHKRQTINCYSGCPSASELSSIWSFVLD 111
            EERVSLCQNCDW GH          +STS   HKRQTI+CYSGCPS+SEL+SIWSF LD
Sbjct: 61  VEERVSLCQNCDWSGHNNSNNNNSSSSSTSPQQHKRQTISCYSGCPSSSELASIWSFCLD 120

Query: 112 FPSGGESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGA 171
               G+S CEQELG+M+I D+      GP +                 C+ DK +V VG+
Sbjct: 121 L--AGQSICEQELGMMNIDDD------GPTD--------------KKTCNEDKKDVLVGS 158

Query: 172 TSVPGINSTTQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENY 231
           +S+P  +S  Q +                 S+ KD+  CE DD Y +  MDE+D+  ENY
Sbjct: 159 SSIPETSSVPQGKS----------------SSAKDVGMCE-DDFYGNLGMDEVDMALENY 201

Query: 232 EELFGVTLNHSEELLENGGIESLF 255
           EELFG   N SEEL  +GGI+SLF
Sbjct: 202 EELFGTAFNPSEELFGHGGIDSLF 225

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUA9|COL10_ARATH Zinc finger protein CONSTANS-LIKE 10 OS=Arabidopsis thaliana GN=COL10 PE=1 SV=1

 Score =  255 bits (652), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 149/280 (53%), Positives = 174/280 (62%), Gaps = 41/280 (14%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGYMCDFCG+QRS+VYCRSDAACLCLSCDRNVH ANALSKRHSRTL+CERCN+QPA VRC
Sbjct: 1   MGYMCDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLVCERCNAQPASVRC 60

Query: 61  AEERVSLCQNCDWIGH--GTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDF--PSGG 116
           ++ERVSLCQNCDW GH    ST+ S HKRQTINCYSGCPS++ELSSIWSF +D    S  
Sbjct: 61  SDERVSLCQNCDWSGHDGKNSTTTSHHKRQTINCYSGCPSSAELSSIWSFCMDLNISSAE 120

Query: 117 ESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPG 176
           ESACEQ +GLM+I ++                  G G         +KS V+      P 
Sbjct: 121 ESACEQGMGLMTIDED------------------GTG---------EKSGVQKINVEQPE 153

Query: 177 INSTTQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFG 236
            +S  Q  D      N+        S  K+L  CEDD    +   DE+DL  ENYEELFG
Sbjct: 154 TSSAAQGMDHSSVPENS--------SMAKELGVCEDD-FNGNLISDEVDLALENYEELFG 204

Query: 237 VTLNHSEELLENGGIESLFGTKDMSAADSNCQGAVAAEVS 276
              N S  L E+GGI SLF  KD +   S  Q A++   S
Sbjct: 205 SAFNSSRYLFEHGGIGSLF-EKDEAHEGSMQQPALSNNAS 243

Arabidopsis thaliana (taxid: 3702)

>sp|O23379|COL11_ARATH Putative zinc finger protein CONSTANS-LIKE 11 OS=Arabidopsis thaliana GN=COL11 PE=3 SV=2

 Score =  124 bits (312), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 56/111 (50%), Positives = 77/111 (69%), Gaps = 2/111 (1%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           M   CDFCG +++++YC+SD+A LCL+CD NVH AN LS+RH+R+LLCE+C+ QP  V C
Sbjct: 1   MEARCDFCGTEKALIYCKSDSAKLCLNCDVNVHSANPLSQRHTRSLLCEKCSLQPTAVHC 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLD 111
             E VSLCQ C W    ++ +   H+ Q++N YS CPS S+   IWS  L+
Sbjct: 61  MNENVSLCQGCQWT--ASNCTGLGHRLQSLNPYSDCPSPSDFGKIWSSTLE 109

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJ44|COL12_ARATH Zinc finger protein CONSTANS-LIKE 12 OS=Arabidopsis thaliana GN=COL12 PE=2 SV=2

 Score =  124 bits (310), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 55/116 (47%), Positives = 80/116 (68%), Gaps = 2/116 (1%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           M   CD C   ++++YC+SD A LCL+CD +VH AN LS RH R+L+CE+C SQPA +RC
Sbjct: 1   MEPKCDHCATSQALIYCKSDLAKLCLNCDVHVHSANPLSHRHIRSLICEKCFSQPAAIRC 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGG 116
            +E+VS CQ C W  H ++ S   H+ Q++N +SGCPS ++ + +WS +L+ P  G
Sbjct: 61  LDEKVSYCQGCHW--HESNCSELGHRVQSLNPFSGCPSPTDFNRMWSSILEPPVSG 114

Arabidopsis thaliana (taxid: 3702)

>sp|O22800|COL14_ARATH Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsis thaliana GN=COL14 PE=2 SV=2

 Score =  119 bits (298), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 47/106 (44%), Positives = 77/106 (72%)

Query: 5   CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
           C+FCG++ ++++CR+D A LCL CD++VH AN LS++H R+ +C+ C+ +P  VRC  + 
Sbjct: 12  CEFCGERTAVLFCRADTAKLCLPCDQHVHSANLLSRKHVRSQICDNCSKEPVSVRCFTDN 71

Query: 65  VSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVL 110
           + LCQ CDW  HG+ +S+++H+R  +  +SGCPS  EL+++W   L
Sbjct: 72  LVLCQECDWDVHGSCSSSATHERSAVEGFSGCPSVLELAAVWGIDL 117

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7E8|COL15_ARATH Zinc finger protein CONSTANS-LIKE 15 OS=Arabidopsis thaliana GN=COL15 PE=2 SV=1

 Score =  118 bits (296), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 82/128 (64%), Gaps = 2/128 (1%)

Query: 5   CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
           CDFCG++ ++++CR+D A LCL CD+ VH AN LS++H R+ +C+ C ++P  VRC  + 
Sbjct: 9   CDFCGERTAVLFCRADTAKLCLPCDQQVHTANLLSRKHVRSQICDNCGNEPVSVRCFTDN 68

Query: 65  VSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESACEQEL 124
           + LCQ CDW  HG+ + + +H R  +  +SGCPSA EL+++W   LD   G +    Q  
Sbjct: 69  LILCQECDWDVHGSCSVSDAHVRSAVEGFSGCPSALELAALWG--LDLEQGRKDEENQVP 126

Query: 125 GLMSITDN 132
            +  + DN
Sbjct: 127 MMAMMMDN 134

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9F4|COLX_ARATH Putative zinc finger protein At1g68190 OS=Arabidopsis thaliana GN=At1g68190 PE=2 SV=1

 Score =  112 bits (281), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/112 (45%), Positives = 75/112 (66%), Gaps = 3/112 (2%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           M  +C+FC   R++VYC +D A LCL+CD  VH AN+LS RH RT+LC+ C +QP +VRC
Sbjct: 10  MERVCEFCKAYRAVVYCIADTANLCLTCDAKVHSANSLSGRHLRTVLCDSCKNQPCVVRC 69

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSF-VLD 111
            + ++ LC  C+   HG  +  S H+R+ + CY+GCP A + + +W F V+D
Sbjct: 70  FDHKMFLCHGCNDKFHGGGS--SEHRRRDLRCYTGCPPAKDFAVMWGFRVMD 119

Arabidopsis thaliana (taxid: 3702)

>sp|O82256|COL13_ARATH Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsis thaliana GN=COL13 PE=2 SV=1

 Score =  106 bits (265), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/102 (47%), Positives = 69/102 (67%), Gaps = 2/102 (1%)

Query: 4   MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEE 63
           +CD+C    ++VYC++D+A LCL+CD+ VH+AN L  +H R+LLC+ CN  P+ + C  E
Sbjct: 12  LCDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLLCDSCNESPSSLFCETE 71

Query: 64  RVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSI 105
           R  LCQNCDW  H  + S+S H R+    ++GCPS  EL +I
Sbjct: 72  RSVLCQNCDWQHH--TASSSLHSRRPFEGFTGCPSVPELLAI 111

Arabidopsis thaliana (taxid: 3702)

>sp|Q940T9|COL4_ARATH Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2

 Score = 82.4 bits (202), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 50/90 (55%)

Query: 4  MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEE 63
          +CD C    + +YCR DAA LCLSCD  VH AN L+ RH+R  +CE C   PA V C  +
Sbjct: 5  LCDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWMCEVCEQAPAHVTCKAD 64

Query: 64 RVSLCQNCDWIGHGTSTSASSHKRQTINCY 93
            +LC  CD   H  +  A  H+R  +  +
Sbjct: 65 AAALCVTCDRDIHSANPLARRHERVPVTPF 94

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK53|COL3_ARATH Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1

 Score = 75.9 bits (185), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 54/107 (50%), Gaps = 1/107 (0%)

Query: 4   MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEE 63
           +CD C    + ++CR+DAA LC  CD  +H AN L+ RH R  LCE C   PA V C  +
Sbjct: 7   LCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTCKAD 66

Query: 64  RVSLCQNCDWIGHGTSTSASSHKRQTIN-CYSGCPSASELSSIWSFV 109
             +LC  CD   H  +  +  H+R  I   Y     A   SS  +FV
Sbjct: 67  AAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPAKSASSSVNFV 113

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	289
255567234	414	transcription factor, putative [Ricinus	0.937	0.654	0.729	1e-110
359485854	415	PREDICTED: zinc finger protein CONSTANS-	0.948	0.660	0.681	1e-105
224131908	379	predicted protein [Populus trichocarpa]	0.844	0.643	0.716	1e-100
356547575	409	PREDICTED: zinc finger protein CONSTANS-	0.923	0.652	0.688	2e-98
356577552	446	PREDICTED: zinc finger protein CONSTANS-	0.923	0.598	0.692	1e-97
449444452	415	PREDICTED: zinc finger protein CONSTANS-	0.944	0.657	0.635	3e-95
356553042	411	PREDICTED: zinc finger protein CONSTANS-	0.927	0.652	0.676	5e-95
224068779	379	predicted protein [Populus trichocarpa]	0.823	0.627	0.684	1e-93
356500843	405	PREDICTED: zinc finger protein CONSTANS-	0.906	0.646	0.658	6e-93
302398767	409	COL domain class transcription factor [M	0.951	0.672	0.642	3e-90

>gi|255567234|ref|XP_002524598.1| transcription factor, putative [Ricinus communis] gi|223536151|gb|EEF37806.1| transcription factor, putative [Ricinus communis]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 202/277 (72%), Positives = 227/277 (81%), Gaps = 6/277 (2%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGY+CDFCGDQRS+VYCRSDAACLCLSCDRNVH ANALS+RHSRTLLCERCNSQPAL+RC
Sbjct: 1   MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSRRHSRTLLCERCNSQPALIRC 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPS-GGESA 119
           A+ER+SLCQ CDW+ HG S S+S+HKRQTINCY+GCPSASELSS+WSFVLDFPS  GES 
Sbjct: 61  ADERLSLCQKCDWMVHGNSNSSSTHKRQTINCYTGCPSASELSSLWSFVLDFPSVDGEST 120

Query: 120 CEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINS 179
           CEQELGLMSI ++S  N+WGP + +ISQN +G     N+ C+  KS+  VG +S P +  
Sbjct: 121 CEQELGLMSIAEDSSTNTWGPPDKTISQNVSGAAA-VNNACEIPKSSGCVGNSSAPQL-- 177

Query: 180 TTQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTL 239
              N D   GSA N PLPKLCC  TK  A CE DDLYEDFNMDE+DLN ENYEELFG+ L
Sbjct: 178 MPNNLDHPAGSA-NAPLPKLCCPGTKGPALCE-DDLYEDFNMDEVDLNLENYEELFGIAL 235

Query: 240 NHSEELLENGGIESLFGTKDMSAADSNCQGAVAAEVS 276
           N SEEL ENGGI+SLFG KDMSAADSNCQGAVAAE S
Sbjct: 236 NDSEELFENGGIDSLFGMKDMSAADSNCQGAVAAEGS 272

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485854|ref|XP_002264506.2| PREDICTED: zinc finger protein CONSTANS-LIKE 9-like [Vitis vinifera] gi|296085061|emb|CBI28476.3| unnamed protein product [Vitis vinifera]

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/276 (68%), Positives = 219/276 (79%), Gaps = 2/276 (0%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGY+CDFCG+QRSIVYCRSDAA LCLSCDR+VH ANALS+RHSRTLLCERCNSQPA VRC
Sbjct: 1   MGYICDFCGEQRSIVYCRSDAASLCLSCDRHVHSANALSRRHSRTLLCERCNSQPAFVRC 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESAC 120
            EE++SLCQNCDW GHG ST+ SSHK++TINCYSGCPS+  LS++W FVLD PS G S C
Sbjct: 61  IEEKISLCQNCDWTGHGGSTTTSSHKKETINCYSGCPSSEGLSTMWPFVLDLPSTGNSTC 120

Query: 121 EQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINST 180
           EQ L LM + + S  NSWGP  +S  Q+A+   VE ND  + DKS++ +G++SVP +NS 
Sbjct: 121 EQGLSLMCLNETSEMNSWGPPGNSSRQDAS-LTVEVNDANNVDKSSILIGSSSVPELNSP 179

Query: 181 TQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLN 240
           +Q  DQ  GSA+   LPKL C  T DL FCEDD LYEDFNMDE+DLN ENYEELFGV L+
Sbjct: 180 SQKLDQPSGSADL-TLPKLLCPGTDDLGFCEDDSLYEDFNMDEVDLNLENYEELFGVALS 238

Query: 241 HSEELLENGGIESLFGTKDMSAADSNCQGAVAAEVS 276
           HSE+L ENGGI+SLFG  D S ADS+CQGAV AE S
Sbjct: 239 HSEQLFENGGIDSLFGKMDTSGADSHCQGAVIAEGS 274

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131908|ref|XP_002321208.1| predicted protein [Populus trichocarpa] gi|222861981|gb|EEE99523.1| predicted protein [Populus trichocarpa]

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 190/265 (71%), Positives = 212/265 (80%), Gaps = 21/265 (7%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGY+CDFCG+QRS+VYCRSDAA LCLSCDRNVH ANALSKRHSRTLLCERCNSQPALVRC
Sbjct: 1   MGYVCDFCGEQRSMVYCRSDAASLCLSCDRNVHSANALSKRHSRTLLCERCNSQPALVRC 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESAC 120
           AEER+SLCQNCDWIGHGTSTSAS+H+RQTIN YSGCPSASELSSIWSFVLDFPS GES C
Sbjct: 61  AEERISLCQNCDWIGHGTSTSASTHRRQTINSYSGCPSASELSSIWSFVLDFPSRGESTC 120

Query: 121 EQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINST 180
           EQELGLMSI +NS  +SWGP E++I QNA+ G VE ND  +  KS V +G++S+P  +S 
Sbjct: 121 EQELGLMSIAENSTTDSWGPTENTIGQNAS-GVVEVNDRREIAKSGVWLGSSSIPESSSV 179

Query: 181 TQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLN 240
             N DQ   SAN   LPK                   DFNMDEMDL+ ENYEELFGVTLN
Sbjct: 180 PNNLDQTTRSANT-SLPK-------------------DFNMDEMDLSLENYEELFGVTLN 219

Query: 241 HSEELLENGGIESLFGTKDMSAADS 265
           +SEELLENGGI+SLFGTKDMS  ++
Sbjct: 220 NSEELLENGGIDSLFGTKDMSVVNA 244

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547575|ref|XP_003542186.1| PREDICTED: zinc finger protein CONSTANS-LIKE 9-like [Glycine max]

 Score =  364 bits (934), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 190/276 (68%), Positives = 216/276 (78%), Gaps = 9/276 (3%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGY+CDFCGDQRS+VYCRSDAACLCLSCDRNVH ANALSKRHSRTLLCERCNSQPA VRC
Sbjct: 1   MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLLCERCNSQPAFVRC 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESAC 120
            EE++SLCQNCDW+GHGTSTS+S+HKRQ INCYSGCPSA+ELSSIWSFVLD  +  ES C
Sbjct: 61  VEEKISLCQNCDWLGHGTSTSSSTHKRQAINCYSGCPSAAELSSIWSFVLDIAAISESTC 120

Query: 121 EQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINST 180
           EQELGLMSI +N  K+   P E    QN +G   E  D    DKS   VG +S+P  +S 
Sbjct: 121 EQELGLMSINEN--KSVGVPPE---GQNVSGSD-EVTDQPALDKS--LVGTSSMPESSSK 172

Query: 181 TQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLN 240
            +  DQ    AN   L KL C ATK  A CE+D+LY+DFNMDE+DLN ENYEELFG+ L+
Sbjct: 173 PRILDQPARPANE-CLSKLYCPATKFPALCENDNLYDDFNMDEVDLNLENYEELFGMALS 231

Query: 241 HSEELLENGGIESLFGTKDMSAADSNCQGAVAAEVS 276
           HSEEL ENGGI+SLFGTKDMSA D +C+ A+AAE S
Sbjct: 232 HSEELFENGGIDSLFGTKDMSAGDFSCEDAIAAEGS 267

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356577552|ref|XP_003556888.1| PREDICTED: zinc finger protein CONSTANS-LIKE 9-like [Glycine max]

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 191/276 (69%), Positives = 216/276 (78%), Gaps = 9/276 (3%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGY+CDFCGDQRS+VYCRSDAACLCLSCDRNVH ANALSKRHSRTLLCERCNSQPA VRC
Sbjct: 38  MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLLCERCNSQPAFVRC 97

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESAC 120
            EE++SLCQNCDW+GHGTSTS+S+HKRQ INCYSGCPSA+ELSSIWSFVL+  +  ES C
Sbjct: 98  VEEKISLCQNCDWLGHGTSTSSSTHKRQAINCYSGCPSAAELSSIWSFVLEIAAISESTC 157

Query: 121 EQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINST 180
           EQELGLMSI +N  K    P ED   QN +G   E  D+   +KS   VGA+ +P  +S 
Sbjct: 158 EQELGLMSINEN--KCVGVPPED---QNVSGSD-EVTDLPALNKS--LVGASLMPESSSE 209

Query: 181 TQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLN 240
               DQ  G  N   LPKL C ATK  A  EDD+LY+DFNMDE+DL+ ENYEELFG+ L+
Sbjct: 210 PCILDQPAGPTNE-CLPKLYCPATKCPALSEDDNLYDDFNMDEVDLDLENYEELFGMALS 268

Query: 241 HSEELLENGGIESLFGTKDMSAADSNCQGAVAAEVS 276
           HSEEL ENGGI+SLFGTK MSA DSNCQ A+AAE S
Sbjct: 269 HSEELFENGGIDSLFGTKGMSAGDSNCQEAIAAEGS 304

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444452|ref|XP_004139988.1| PREDICTED: zinc finger protein CONSTANS-LIKE 9-like [Cucumis sativus] gi|449475645|ref|XP_004154511.1| PREDICTED: zinc finger protein CONSTANS-LIKE 9-like [Cucumis sativus]

 Score =  354 bits (908), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 178/280 (63%), Positives = 213/280 (76%), Gaps = 7/280 (2%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MG+MCDFCGDQRS+VYCRSDAACLCLSCDRNVH ANALS+RH+RTLLCERC+ QP+ VRC
Sbjct: 1   MGFMCDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSRRHTRTLLCERCHLQPSTVRC 60

Query: 61  AEERVSLCQNCDWIGHGTST-SASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESA 119
            EERVSLCQNCDW GHG+ST ++SSHKRQTINCYSGCPSA+ELS IWSFVLD PS  + A
Sbjct: 61  IEERVSLCQNCDWTGHGSSTLASSSHKRQTINCYSGCPSAAELSCIWSFVLDVPSVND-A 119

Query: 120 CEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINS 179
           CE+ELGLMSI +  +  +W P+E++  Q    G  EA+DVC  +KSNV VG++S+ G   
Sbjct: 120 CEKELGLMSIAETDLTGAWSPSENNAGQRMP-GSTEASDVCSREKSNVLVGSSSLIGSRP 178

Query: 180 TTQNRDQIHGSANNPPLPKLCCSATKDLAFC-EDDDLYEDFNMDEMDLNFENYEELFGVT 238
            T ++       +N  LPK CC  TK   FC EDDDLY++F+MDEMDLN ENYE+LF ++
Sbjct: 179 HTSDQPV---ELDNVALPKFCCPGTKVAEFCGEDDDLYKEFDMDEMDLNLENYEDLFSMS 235

Query: 239 LNHSEELLENGGIESLFGTKDMSAADSNCQGAVAAEVSYL 278
           LNHSEE  ENGGI+S F  K +S  DS    AV AE S +
Sbjct: 236 LNHSEEFFENGGIDSFFEAKGLSFEDSVSHSAVVAEGSSM 275

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553042|ref|XP_003544867.1| PREDICTED: zinc finger protein CONSTANS-LIKE 10-like [Glycine max]

 Score =  353 bits (906), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 188/278 (67%), Positives = 214/278 (76%), Gaps = 10/278 (3%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGY+CDFCGDQRS+VYCRSDAACLCLSCDRNVH ANALS+RHSRTL+CERCNSQPA VRC
Sbjct: 1   MGYLCDFCGDQRSLVYCRSDAACLCLSCDRNVHSANALSRRHSRTLVCERCNSQPAFVRC 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESAC 120
            +E++SLCQNCDW+GHGTS S+S+HKRQ+INCYSGCPSA+E SSIWSF LD PS GE AC
Sbjct: 61  VDEKISLCQNCDWLGHGTSPSSSTHKRQSINCYSGCPSAAEFSSIWSFFLDIPSMGE-AC 119

Query: 121 EQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINST 180
           EQELGLMSI +NS KN+W   E    QN + G  E  D+    KS    G +SVP  +S 
Sbjct: 120 EQELGLMSINENSNKNAWASPE---GQNVS-GSAEVTDLPSKGKS--WAGTSSVPESSSE 173

Query: 181 TQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLN 240
            +  DQ  G AN   +PKL C   K     EDDDLY+DF MDE+DL  ENYEELFG+ L+
Sbjct: 174 PRILDQPPGPANE-CMPKLYCPGKKVSGIYEDDDLYDDFIMDEVDLQLENYEELFGMALS 232

Query: 241 HSEELLENGGIESLFGTKDMSAA--DSNCQGAVAAEVS 276
           HSEEL ENGGI SLF TKDMSA+  DS+CQGAVAAE S
Sbjct: 233 HSEELFENGGINSLFETKDMSASAGDSHCQGAVAAEGS 270

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068779|ref|XP_002302823.1| predicted protein [Populus trichocarpa] gi|222844549|gb|EEE82096.1| predicted protein [Populus trichocarpa]

 Score =  348 bits (894), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 182/266 (68%), Positives = 204/266 (76%), Gaps = 28/266 (10%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGY+CDFCG+QRS+VYCRSDAACLCLSCD+ VH ANALSKRHSRTLLCERCNSQPALVR 
Sbjct: 1   MGYICDFCGEQRSMVYCRSDAACLCLSCDQIVHSANALSKRHSRTLLCERCNSQPALVRR 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESAC 120
            EER+SLCQNCDW+G+G+STSAS+HKRQTINCY GCPS SELSS W F+LD PSGG S C
Sbjct: 61  VEERISLCQNCDWMGYGSSTSASTHKRQTINCYFGCPSVSELSSKWPFILDSPSGGGSTC 120

Query: 121 EQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINST 180
           EQELGLMSI +NS KN+WGP E++I  NA+G                 VGA+SVP  +S 
Sbjct: 121 EQELGLMSIAENSTKNTWGPTENTICHNASG----------------IVGASSVPESSSV 164

Query: 181 TQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLN 240
            +N DQ   S N+  LPK+C           D DLYEDFNM EMDLN ENYEELFGVTLN
Sbjct: 165 PKNLDQPTRSPNS-SLPKVC-----------DADLYEDFNMAEMDLNLENYEELFGVTLN 212

Query: 241 HSEELLENGGIESLFGTKDMSAADSN 266
           +SEEL ENGGI+SLFGTKDM   DSN
Sbjct: 213 NSEELFENGGIDSLFGTKDMPIVDSN 238

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500843|ref|XP_003519240.1| PREDICTED: zinc finger protein CONSTANS-LIKE 9-like [Glycine max]

 Score =  346 bits (888), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 183/278 (65%), Positives = 207/278 (74%), Gaps = 16/278 (5%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGY+CDFCGDQRS+VYCRSD+ACLCLSCDRNVH ANALS+RHSRTL+CERCNSQPA VR 
Sbjct: 1   MGYLCDFCGDQRSLVYCRSDSACLCLSCDRNVHSANALSRRHSRTLVCERCNSQPAFVRS 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESAC 120
            EE++SLCQNCDW+GHGTS S+S HKRQ+INCYSGCPSA+E SSIWSF LD PS GE AC
Sbjct: 61  VEEKISLCQNCDWLGHGTSPSSSMHKRQSINCYSGCPSAAEFSSIWSFFLDIPSLGE-AC 119

Query: 121 EQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINST 180
           EQELGLMSI +N       P E    QN + G  E  D+    KS    G  S+P  +S 
Sbjct: 120 EQELGLMSINENI------PPE---GQNVS-GSTEVTDLPSKGKS--WAGTPSIPESSSE 167

Query: 181 TQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLN 240
            +  DQ  G AN   +PKL C   K    CEDDDLY+DF MDE+DL  ENYEELFG+ L+
Sbjct: 168 PRILDQPPGPANE-CVPKLYCPGKKASGICEDDDLYDDFIMDEVDLELENYEELFGMALS 226

Query: 241 HSEELLENGGIESLFGTKDMSAA--DSNCQGAVAAEVS 276
           HSEEL ENGGI SLF  KDMSA+  DS+CQGAVAAE S
Sbjct: 227 HSEELFENGGINSLFEAKDMSASAGDSHCQGAVAAEGS 264

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398767|gb|ADL36678.1| COL domain class transcription factor [Malus x domestica]

 Score =  337 bits (865), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 180/280 (64%), Positives = 212/280 (75%), Gaps = 5/280 (1%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGYMCD+C  QRS+V+CRSDAACLCLSCDRNVH ANALS+RH RTL+CERCNSQPALVRC
Sbjct: 1   MGYMCDYCQVQRSMVHCRSDAACLCLSCDRNVHSANALSRRHLRTLICERCNSQPALVRC 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESAC 120
            EERVSLCQNCDW+GH  STSAS HKRQT+NCYSGCPS++ELSSIWSFV D PS GESAC
Sbjct: 61  TEERVSLCQNCDWMGHQASTSASGHKRQTLNCYSGCPSSAELSSIWSFVSDLPSNGESAC 120

Query: 121 EQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINST 180
           EQE+GLMSI +NS ++ W   E +  Q+A+G   E N     +KS + VG++SVP  +  
Sbjct: 121 EQEMGLMSIAENSTRSEWSQTESNTRQSASGAD-EVNPAHSMEKSGILVGSSSVPERSHA 179

Query: 181 TQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLN 240
                Q+ GS  N  LPKL     K     EDDDLY+D +MDEM+LN ENY+ELFGV+LN
Sbjct: 180 RHVVGQLSGSV-NASLPKLYSHGGKGTGLPEDDDLYDDLDMDEMELNLENYDELFGVSLN 238

Query: 241 HSEELLENGGIESLFGTKDMSAADSNCQGAVAAEVSYLIL 280
           HSEEL +NGGI+SLFG K++S    +CQ AVAAE S   L
Sbjct: 239 HSEELFKNGGIDSLFGAKNVS---RDCQDAVAAEGSSFGL 275

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	289
TAIR|locus:2164718	373	BBX8 "B-box domain protein 8"	0.546	0.423	0.660	1.6e-56
TAIR|locus:2091082	372	COL9 "CONSTANS-like 9" [Arabid	0.560	0.435	0.601	2e-56
TAIR|locus:2129860	330	BBX9 "B-box domain protein 9"	0.370	0.324	0.518	7.1e-34
TAIR|locus:2088748	364	BBX10 "B-box domain protein 10	0.380	0.302	0.482	3.8e-33
TAIR|locus:2199262	356	BBX27 "B-box domain protein 27	0.377	0.306	0.455	3.4e-32
TAIR|locus:2010504	433	BBX13 "B-box domain protein 13	0.467	0.311	0.412	2.1e-29
TAIR|locus:2051104	402	BBX12 "B-box domain protein 12	0.408	0.293	0.416	2.4e-28
TAIR|locus:2043288	332	AT2G47890 [Arabidopsis thalian	0.346	0.301	0.470	9.7e-25
UNIPROTKB|Q9FRZ6	259	Q9FRZ6 "Hd1" [Oryza sativa (ta	0.626	0.698	0.3	6.7e-17
UNIPROTKB|Q9FE92	407	Hd1 "Heading day 1" [Oryza sat	0.626	0.444	0.3	1.8e-15

TAIR|locus:2164718 BBX8 "B-box domain protein 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 107/162 (66%), Positives = 125/162 (77%)

Query:     1 MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
             MGYMCDFCG+QRS+VYCRSDAACLCLSCDRNVH ANALSKRHSRTL+CERCN+QPA VRC
Sbjct:     1 MGYMCDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLVCERCNAQPASVRC 60

Query:    61 AEERVSLCQNCDWIGHG--TSTSASSHKRQTINCYSGCPSASELSSIWSFVLDF--PSGG 116
             ++ERVSLCQNCDW GH    ST+ S HKRQTINCYSGCPS++ELSSIWSF +D    S  
Sbjct:    61 SDERVSLCQNCDWSGHDGKNSTTTSHHKRQTINCYSGCPSSAELSSIWSFCMDLNISSAE 120

Query:   117 ESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEAND 158
             ESACEQ +GLM+I ++      G  + ++ Q       +  D
Sbjct:   121 ESACEQGMGLMTIDEDGTGEKSGVQKINVEQPETSSAAQGMD 162

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0007623 "circadian rhythm" evidence=RCA

TAIR|locus:2091082 COL9 "CONSTANS-like 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 116/193 (60%), Positives = 137/193 (70%)

Query:     1 MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
             MGYMCDFCG+QRS+VYCRSDAACLCLSCDR+VH ANALSKRHSRTL+CERCN+QPA VRC
Sbjct:     1 MGYMCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLVCERCNAQPATVRC 60

Query:    61 AEERVSLCQNCDWIGHG---------TSTSASSHKRQTINCYSGCPSASELSSIWSFVLD 111
              EERVSLCQNCDW GH          +STS   HKRQTI+CYSGCPS+SEL+SIWSF LD
Sbjct:    61 VEERVSLCQNCDWSGHNNSNNNNSSSSSTSPQQHKRQTISCYSGCPSSSELASIWSFCLD 120

Query:   112 FPSGGESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGA 171
                 G+S CEQELG+M+I D+      GP +                 C+ DK +V VG+
Sbjct:   121 L--AGQSICEQELGMMNIDDD------GPTDKK--------------TCNEDKKDVLVGS 158

Query:   172 TSVPGINSTTQNR 184
             +S+P  +S  Q +
Sbjct:   159 SSIPETSSVPQGK 171

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048579 "negative regulation of long-day photoperiodism, flowering" evidence=IMP

GO:0007623 "circadian rhythm" evidence=IEP;RCA

TAIR|locus:2129860 BBX9 "B-box domain protein 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 7.1e-34, Sum P(2) = 7.1e-34
 Identities = 57/110 (51%), Positives = 78/110 (70%)

Query:     5 CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
             CDFCG +++++YC+SD+A LCL+CD NVH AN LS+RH+R+LLCE+C+ QP  V C  E 
Sbjct:     5 CDFCGTEKALIYCKSDSAKLCLNCDVNVHSANPLSQRHTRSLLCEKCSLQPTAVHCMNEN 64

Query:    65 VSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPS 114
             VSLCQ C W    ++ +   H+ Q++N YS CPS S+   IWS  L+ PS
Sbjct:    65 VSLCQGCQWTA--SNCTGLGHRLQSLNPYSDCPSPSDFGKIWSSTLE-PS 111

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2088748 BBX10 "B-box domain protein 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 3.8e-33, Sum P(2) = 3.8e-33
 Identities = 54/112 (48%), Positives = 79/112 (70%)

Query:     5 CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
             CD C   ++++YC+SD A LCL+CD +VH AN LS RH R+L+CE+C SQPA +RC +E+
Sbjct:     5 CDHCATSQALIYCKSDLAKLCLNCDVHVHSANPLSHRHIRSLICEKCFSQPAAIRCLDEK 64

Query:    65 VSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGG 116
             VS CQ C W  H ++ S   H+ Q++N +SGCPS ++ + +WS +L+ P  G
Sbjct:    65 VSYCQGCHW--HESNCSELGHRVQSLNPFSGCPSPTDFNRMWSSILEPPVSG 114

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2199262 BBX27 "B-box domain protein 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 3.4e-32, Sum P(2) = 3.4e-32
 Identities = 51/112 (45%), Positives = 75/112 (66%)

Query:     1 MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
             M  +C+FC   R++VYC +D A LCL+CD  VH AN+LS RH RT+LC+ C +QP +VRC
Sbjct:    10 MERVCEFCKAYRAVVYCIADTANLCLTCDAKVHSANSLSGRHLRTVLCDSCKNQPCVVRC 69

Query:    61 AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSF-VLD 111
              + ++ LC  C+   HG  +S   H+R+ + CY+GCP A + + +W F V+D
Sbjct:    70 FDHKMFLCHGCNDKFHGGGSS--EHRRRDLRCYTGCPPAKDFAVMWGFRVMD 119

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2010504 BBX13 "B-box domain protein 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 59/143 (41%), Positives = 94/143 (65%)

Query:     5 CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
             CDFCG++ ++++CR+D A LCL CD+ VH AN LS++H R+ +C+ C ++P  VRC  + 
Sbjct:     9 CDFCGERTAVLFCRADTAKLCLPCDQQVHTANLLSRKHVRSQICDNCGNEPVSVRCFTDN 68

Query:    65 VSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESACEQEL 124
             + LCQ CDW  HG+ + + +H R  +  +SGCPSA EL+++W   LD   G +   E ++
Sbjct:    69 LILCQECDWDVHGSCSVSDAHVRSAVEGFSGCPSALELAALWG--LDLEQGRKDE-ENQV 125

Query:   125 GLMSIT-DN-SIK-NSW--GPNE 142
              +M++  DN  ++ +SW  G NE
Sbjct:   126 PMMAMMMDNFGMQLDSWVLGSNE 148

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0007623 "circadian rhythm" evidence=RCA

TAIR|locus:2051104 BBX12 "B-box domain protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 50/120 (41%), Positives = 82/120 (68%)

Query:     5 CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
             C+FCG++ ++++CR+D A LCL CD++VH AN LS++H R+ +C+ C+ +P  VRC  + 
Sbjct:    12 CEFCGERTAVLFCRADTAKLCLPCDQHVHSANLLSRKHVRSQICDNCSKEPVSVRCFTDN 71

Query:    65 VSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESACEQEL 124
             + LCQ CDW  HG+ +S+++H+R  +  +SGCPS  EL+++W   +D     +   E EL
Sbjct:    72 LVLCQECDWDVHGSCSSSATHERSAVEGFSGCPSVLELAAVWG--IDLKGKKKEDDEDEL 129

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2043288 AT2G47890 [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 48/102 (47%), Positives = 69/102 (67%)

Query:     4 MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEE 63
             +CD+C    ++VYC++D+A LCL+CD+ VH+AN L  +H R+LLC+ CN  P+ + C  E
Sbjct:    12 LCDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLLCDSCNESPSSLFCETE 71

Query:    64 RVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSI 105
             R  LCQNCDW  H  + S+S H R+    ++GCPS  EL +I
Sbjct:    72 RSVLCQNCDWQHH--TASSSLHSRRPFEGFTGCPSVPELLAI 111

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

UNIPROTKB|Q9FRZ6 Q9FRZ6 "Hd1" [Oryza sativa (taxid:4530)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 57/190 (30%), Positives = 86/190 (45%)

Query:     5 CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
             CD C    S+VYCR+DAA LC SCD  VH AN ++ RH R  +CE C   PA + C  + 
Sbjct:    35 CDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRVCEACERAPAALACRADA 94

Query:    65 VSLCQNCDWIGHGTSTSASSHKRQTINCYSGC--PSASELSSIWSFVLDFPSGGESACEQ 122
              +LC  CD   +  +  A  H+R  +        P+ S L+             +   + 
Sbjct:    95 AALCVACDVQVYSANPLARRHQRVPVAPLPAITIPATSVLAEAVVATATVLGDKDEEVDS 154

Query:   123 ELGLMSITDNSIKNSWG---PNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINS 179
              L L   +DN+  N+      N D+ + N++  G+   +V   D+    VG  S    N 
Sbjct:   155 WLLLSKDSDNNNNNNNNNDNDNNDNNNSNSSNNGMYFGEV---DEYFDLVGYNSYYD-NR 210

Query:   180 TTQNRDQIHG 189
                N+D+ +G
Sbjct:   211 IENNQDRQYG 220

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0010229 "inflorescence development" evidence=IGI

GO:0048571 "long-day photoperiodism" evidence=IEP

GO:0048572 "short-day photoperiodism" evidence=IEP

UNIPROTKB|Q9FE92 Hd1 "Heading day 1" [Oryza sativa (taxid:4530)]

 Score = 208 (78.3 bits), Expect = 1.8e-15, P = 1.8e-15
 Identities = 57/190 (30%), Positives = 86/190 (45%)

Query:     5 CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
             CD C    S+VYCR+DAA LC SCD  VH AN ++ RH R  +CE C   PA + C  + 
Sbjct:    35 CDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRVCEACERAPAALACRADA 94

Query:    65 VSLCQNCDWIGHGTSTSASSHKRQTINCYSGC--PSASELSSIWSFVLDFPSGGESACEQ 122
              +LC  CD   +  +  A  H+R  +        P+ S L+             +   + 
Sbjct:    95 AALCVACDVQVYSANPLARRHQRVPVAPLPAITIPATSVLAEAVVATATVLGDKDEEVDS 154

Query:   123 ELGLMSITDNSIKNSWG---PNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINS 179
              L L   +DN+  N+      N D+ + N++  G+   +V   D+    VG  S    N 
Sbjct:   155 WLLLSKDSDNNNNNNNNNDNDNNDNNNSNSSNNGMYFGEV---DEYFDLVGYNSYYD-NR 210

Query:   180 TTQNRDQIHG 189
                N+D+ +G
Sbjct:   211 IENNQDRQYG 220

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0010229 "inflorescence development" evidence=IGI

GO:0048571 "long-day photoperiodism" evidence=IEP

GO:0048572 "short-day photoperiodism" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00029061001 SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (405 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	289
smart00336	42	smart00336, BBOX, B-Box-type zinc finger	5e-06
cd00021	39	cd00021, BBOX, B-Box-type zinc finger; zinc bindin	8e-06
cd00021	39	cd00021, BBOX, B-Box-type zinc finger; zinc bindin	0.001

>gnl|CDD|197662 smart00336, BBOX, B-Box-type zinc finger

 Score = 42.3 bits (100), Expect = 5e-06
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 4  MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLL 47
           CD  GD+ +  +C    A LC +CD   H      + H+  LL
Sbjct: 5  KCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL 42

Length = 42

>gnl|CDD|237988 cd00021, BBOX, B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

 Score = 41.5 bits (98), Expect = 8e-06
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 4  MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLL 47
          +CD  G++   ++C +D A LC+ CD +VH        H R  L
Sbjct: 2  LCDEHGEEPLSLFCETDRALLCVDCDLSVH------SGHRRVPL 39

Length = 39

>gnl|CDD|237988 cd00021, BBOX, B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

 Score = 35.7 bits (83), Expect = 0.001
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 47 LCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTI 90
          LC+    +P  + C  +R  LC +CD   H      S H+R  +
Sbjct: 2  LCDEHGEEPLSLFCETDRALLCVDCDLSVH------SGHRRVPL 39

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	289
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	97.45
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	97.22
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	97.17
smart00336	42	BBOX B-Box-type zinc finger.	97.09
smart00336	42	BBOX B-Box-type zinc finger.	96.29
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	96.27
KOG4367	699	consensus Predicted Zn-finger protein [Function un	95.03

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=97.45  E-value=8.6e-05  Score=48.96  Aligned_cols=38  Identities=32%  Similarity=0.768  Sum_probs=33.3

Q ss_pred             cccccCCCCceeeccccccccccCcccCccCCCCCCCCCcceec
Q 023005           47 LCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTI   90 (289)
Q Consensus        47 LCd~C~~~PA~v~C~~d~a~LC~~CD~~~H~an~~as~HqR~pL   90 (289)
                      +|+.|+.+++.+||..|.+.+|..|+..+|.      .|.++||
T Consensus         2 ~C~~H~~~~~~~fC~~~~~~iC~~C~~~~H~------~H~~~~i   39 (39)
T cd00021           2 LCDEHGEEPLSLFCETDRALLCVDCDLSVHS------GHRRVPL   39 (39)
T ss_pred             CCCccCCcceEEEeCccChhhhhhcChhhcC------CCCEeeC
Confidence            5888988899999999999999999988763      7888775

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=97.22  E-value=0.00025  Score=46.75  Aligned_cols=39  Identities=38%  Similarity=0.809  Sum_probs=33.5

Q ss_pred             CCCCccCCCCeeEEecCCccccccccccccccccccccccccccc
Q 023005            3 YMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLL   47 (289)
Q Consensus         3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vHsaN~La~RH~RvpL   47 (289)
                      ..|+.++.+++.+||..|.+.+|..|+...|.      .|.++++
T Consensus         1 ~~C~~H~~~~~~~fC~~~~~~iC~~C~~~~H~------~H~~~~i   39 (39)
T cd00021           1 RLCDEHGEEPLSLFCETDRALLCVDCDLSVHS------GHRRVPL   39 (39)
T ss_pred             CCCCccCCcceEEEeCccChhhhhhcChhhcC------CCCEeeC
Confidence            36899998899999999999999999988775      5777664

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.17  E-value=0.00015  Score=49.09  Aligned_cols=41  Identities=27%  Similarity=0.537  Sum_probs=34.8

Q ss_pred             ccccccccCCCCceeeccccccccccCcccCccCCCCCCCCCcceec
Q 023005           44 RTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTI   90 (289)
Q Consensus        44 RvpLCd~C~~~PA~v~C~~d~a~LC~~CD~~~H~an~~as~HqR~pL   90 (289)
                      +.++|..|...++.+||..|..++|..|....|.      +|+.+||
T Consensus         2 ~~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~------~H~~~~i   42 (42)
T PF00643_consen    2 QEPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHK------GHKIVPI   42 (42)
T ss_dssp             SSSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTT------TSEEEEC
T ss_pred             cCccCccCCccceEEEecCCCCccCccCCCCCCC------CCEEeEC
Confidence            3568999999889999999999999999999875      3888775

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>smart00336 BBOX B-Box-type zinc finger

Probab=97.09  E-value=0.00048  Score=45.95  Aligned_cols=41  Identities=29%  Similarity=0.545  Sum_probs=34.8

Q ss_pred             ccccccccCCCCceeeccccccccccCcccCccCCCCCCCCCcceec
Q 023005           44 RTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTI   90 (289)
Q Consensus        44 RvpLCd~C~~~PA~v~C~~d~a~LC~~CD~~~H~an~~as~HqR~pL   90 (289)
                      |..+|..|...++.+||..|...+|..|....|      ++|.+.||
T Consensus         2 ~~~~C~~h~~~~~~~~C~~c~~~iC~~C~~~~H------~~H~~~~l   42 (42)
T smart00336        2 RPPKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL   42 (42)
T ss_pred             cCCcCCCCCCCceEEECCCCCcccccccChhhc------CCCceecC
Confidence            567899999999999999999999999987655      57777664

>smart00336 BBOX B-Box-type zinc finger

Probab=96.29  E-value=0.0034  Score=41.78  Aligned_cols=39  Identities=36%  Similarity=0.718  Sum_probs=32.7

Q ss_pred             CCCCccCCCCeeEEecCCccccccccccccccccccccccccccc
Q 023005            3 YMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLL   47 (289)
Q Consensus         3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vHsaN~La~RH~RvpL   47 (289)
                      ..|..++..++.+||..|.+.+|..|....|      +.|.+.+|
T Consensus         4 ~~C~~h~~~~~~~~C~~c~~~iC~~C~~~~H------~~H~~~~l   42 (42)
T smart00336        4 PKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL   42 (42)
T ss_pred             CcCCCCCCCceEEECCCCCcccccccChhhc------CCCceecC
Confidence            5799999889999999999999999998766      34666553

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.27  E-value=0.0031  Score=42.60  Aligned_cols=40  Identities=18%  Similarity=0.337  Sum_probs=33.7

Q ss_pred             CCCCCccCCCCeeEEecCCccccccccccccccccccccccccccc
Q 023005            2 GYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLL   47 (289)
Q Consensus         2 ~~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vHsaN~La~RH~RvpL   47 (289)
                      ...|..+...++.+||..+...+|..|....|..      |..++|
T Consensus         3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~------H~~~~i   42 (42)
T PF00643_consen    3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG------HKIVPI   42 (42)
T ss_dssp             SSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT------SEEEEC
T ss_pred             CccCccCCccceEEEecCCCCccCccCCCCCCCC------CEEeEC
Confidence            4679999999999999999999999999999865      666553

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=95.03  E-value=0.0061  Score=61.51  Aligned_cols=74  Identities=18%  Similarity=0.434  Sum_probs=60.4

Q ss_pred             CCCCccCCC--CeeEEecCCccccccccccccccccccccccccccc----------------ccccCCCCceeeccccc
Q 023005            3 YMCDFCGDQ--RSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLL----------------CERCNSQPALVRCAEER   64 (289)
Q Consensus         3 ~~Cd~C~~a--~A~vyC~aD~A~LC~~CD~~vHsaN~La~RH~RvpL----------------Cd~C~~~PA~v~C~~d~   64 (289)
                      ..|.+|+++  .|.|+|..+..+.|.-|..+.|-+..-..+|.-++-                |.-+..+.-.+||..|+
T Consensus       163 ~kcqlce~a~k~a~v~ceqcdv~yc~pc~~~~hp~rgplakh~l~~~~~grvs~~~s~r~~~~ct~h~~e~~smyc~~ck  242 (699)
T KOG4367|consen  163 LKCQLCEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMYCVQCK  242 (699)
T ss_pred             hhhhhhcCChhhhhhhHhhCceEEechHHhccCCCCCchhhcccCCcccCceeeccchhhhhhccCCCCCCceEEEEecC
Confidence            358999987  589999999999999999999988666667765432                55555556789999999


Q ss_pred             cccccCcccCcc
Q 023005           65 VSLCQNCDWIGH   76 (289)
Q Consensus        65 a~LC~~CD~~~H   76 (289)
                      +++|-.|-..+.
T Consensus       243 ~pvc~~clee~k  254 (699)
T KOG4367|consen  243 MPVCYQCLEEGK  254 (699)
T ss_pred             ChHHHHHHHhhc
Confidence            999999988763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	289
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	98.48
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	94.38
2d8u_A	64	Ubiquitin ligase TRIM63; tripartite motif-containi	94.14
2yvr_A	50	Transcription intermediary factor 1-beta; ZF-B_BOX	93.96
3ddt_A	48	E3 ubiquitin-protein ligase TRIM63; zinc-binding m	91.36
2did_A	53	Tripartite motif protein 39; ZF-B-box domian, Zn b	91.31
2ffw_A	78	Midline-1; B-BOX, ring finger, zinc-finger, ligase	90.35
1fre_A	42	Nuclear factor XNF7; zinc-binding protein, BBOX, d	89.93
2dja_A	84	Midline-2; tripartite motif protein 1, ZF-B_BOX, s	88.24
2yrg_A	59	Tripartite motif-containing protein 5; B-box domai	86.06
2ffw_A	78	Midline-1; B-BOX, ring finger, zinc-finger, ligase	84.45
2csv_A	72	Tripartite motif protein 29; ZF-B_BOX domain, TRIM	80.99

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=98.48  E-value=6.2e-08  Score=75.33  Aligned_cols=84  Identities=19%  Similarity=0.473  Sum_probs=67.9

Q ss_pred             CCCCCccCC---CCeeEEecCCccccccccccccccccccccccccc----------ccccccCCCCceeeccccccccc
Q 023005            2 GYMCDFCGD---QRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRT----------LLCERCNSQPALVRCAEERVSLC   68 (289)
Q Consensus         2 ~~~Cd~C~~---a~A~vyC~aD~A~LC~~CD~~vHsaN~La~RH~Rv----------pLCd~C~~~PA~v~C~~d~a~LC   68 (289)
                      +..|++|..   .+|+.+|..+.+.||..|...+|..+...++|.++          .+|+.++..+..+||..|...+|
T Consensus         3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~~~~~~~C~~H~~e~l~~fC~~~~~~iC   82 (101)
T 2jun_A            3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVTDDQLIC   82 (101)
T ss_dssp             CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSCCSSCCCCSSCSSSCCCEEETTTTEEEC
T ss_pred             CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccccCccCCcCcCcCCCcceEECCCCCCccc
Confidence            357999984   68999999999999999999999877766788765          24666666678999999999999


Q ss_pred             cCccc-CccCCCCCCCCCcceecc
Q 023005           69 QNCDW-IGHGTSTSASSHKRQTIN   91 (289)
Q Consensus        69 ~~CD~-~~H~an~~as~HqR~pL~   91 (289)
                      ..|.. ..|      ..|..+||.
T Consensus        83 ~~C~~~~~H------~~H~~~~l~  100 (101)
T 2jun_A           83 ALCKLVGRH------RDHQVAALS  100 (101)
T ss_dssp             HHHHHHTTT------SSSCBCCCC
T ss_pred             hhcCCCCCc------CCCCeecCC
Confidence            99986 445      357666653

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=94.38  E-value=0.012  Score=45.17  Aligned_cols=43  Identities=28%  Similarity=0.571  Sum_probs=35.9

Q ss_pred             ccccccCC---CCceeeccccccccccCcccCccCCCCCCCCCcce
Q 023005           46 LLCERCNS---QPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQ   88 (289)
Q Consensus        46 pLCd~C~~---~PA~v~C~~d~a~LC~~CD~~~H~an~~as~HqR~   88 (289)
                      ..|++|..   .+|+.+|..|...||..|....|..+....+|+++
T Consensus         4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~   49 (101)
T 2jun_A            4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI   49 (101)
T ss_dssp             CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBS
T ss_pred             CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeee
Confidence            56999984   57999999999999999998878766656788765

>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=94.14  E-value=0.022  Score=40.41  Aligned_cols=46  Identities=15%  Similarity=0.335  Sum_probs=35.9

Q ss_pred             ccccccccccccCCCCceeeccccccccccCcccC-ccCCCCCCCCCcceecc
Q 023005           40 KRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTIN   91 (289)
Q Consensus        40 ~RH~RvpLCd~C~~~PA~v~C~~d~a~LC~~CD~~-~H~an~~as~HqR~pL~   91 (289)
                      .+..+..+|..+...+..+||..|..++|..|... .|      ..|..+||.
T Consensus         3 ~~~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~   49 (64)
T 2d8u_A            3 SGSSGHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH------KACEVAPLQ   49 (64)
T ss_dssp             CCCCCCCCCSSCTTCCCCSEESSSCCCCCSHHHHSSST------TSSCEECTT
T ss_pred             CCCCCCCcCcCcCCCccceEcCcCCceeCccccCCCcC------CCCCeeCHH
Confidence            34556678999977889999999999999999865 44      357766654

>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}

Probab=93.96  E-value=0.021  Score=38.83  Aligned_cols=44  Identities=23%  Similarity=0.547  Sum_probs=35.6

Q ss_pred             ccccccccccCCCCceeeccccccccccCcccCccCCCCCCCCCcceecc
Q 023005           42 HSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTIN   91 (289)
Q Consensus        42 H~RvpLCd~C~~~PA~v~C~~d~a~LC~~CD~~~H~an~~as~HqR~pL~   91 (289)
                      ..|...|..+...+..+||..|...+|..|....|      ..|..+||.
T Consensus         3 ~~~~~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H------~~H~~~~l~   46 (50)
T 2yvr_A            3 GERTVYCNVHKHEPLVLFCESCDTLTCRDCQLNAH------KDHQYQFLE   46 (50)
T ss_dssp             CCCSCBCSSSTTCBCCEEETTTTEEECHHHHHTTT------TTCCEEETT
T ss_pred             CcCCCcCcCCCCCCEEEEeCCCCEEEecccCCCcC------CCCceecHH
Confidence            45667788887788999999999999999987544      377777765

>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A

Probab=91.36  E-value=0.076  Score=35.80  Aligned_cols=42  Identities=14%  Similarity=0.365  Sum_probs=32.0

Q ss_pred             ccccccccCCCCceeeccccccccccCcccC-ccCCCCCCCCCcceecc
Q 023005           44 RTLLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTIN   91 (289)
Q Consensus        44 RvpLCd~C~~~PA~v~C~~d~a~LC~~CD~~-~H~an~~as~HqR~pL~   91 (289)
                      +..+|..+...+..+||..|...+|..|... .|      ..|..+||.
T Consensus         5 ~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~   47 (48)
T 3ddt_A            5 SHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH------KACEVAPLQ   47 (48)
T ss_dssp             TSCBCSSSTTSBCCEEETTTTEEECHHHHHHSTT------TTSCEEECC
T ss_pred             cCCcCCCCCCccccEEcCCCCeeEcccccCCCcC------CCCcEEeCC
Confidence            3456777776778899999999999999743 45      467777764

>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A

Probab=91.31  E-value=0.097  Score=35.91  Aligned_cols=41  Identities=20%  Similarity=0.452  Sum_probs=32.6

Q ss_pred             ccccccccCCCCceeeccccccccccCcccC-ccCCCCCCCCCcceecc
Q 023005           44 RTLLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTIN   91 (289)
Q Consensus        44 RvpLCd~C~~~PA~v~C~~d~a~LC~~CD~~-~H~an~~as~HqR~pL~   91 (289)
                      +..+|..+. .+..+||..|...+|..|... .|      ..|..+||.
T Consensus         7 ~~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~   48 (53)
T 2did_A            7 GESLCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAHTVVPLS   48 (53)
T ss_dssp             SCCBCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTSCEEECC
T ss_pred             CCCcChhhC-CeeeEEeCCCCeEEeccccCCCCC------CCCcEeeHH
Confidence            345688887 778999999999999999874 34      478888875

>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}

Probab=90.35  E-value=0.082  Score=39.71  Aligned_cols=44  Identities=27%  Similarity=0.559  Sum_probs=35.7

Q ss_pred             cccccccCC---CCceeeccccccccccCcccCccCCCCCCCCCcce
Q 023005           45 TLLCERCNS---QPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQ   88 (289)
Q Consensus        45 vpLCd~C~~---~PA~v~C~~d~a~LC~~CD~~~H~an~~as~HqR~   88 (289)
                      ...|+.|..   .+|..+|..|.+++|..|-...|.......+|+.+
T Consensus        30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L~   76 (78)
T 2ffw_A           30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI   76 (78)
T ss_dssp             CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCCS
T ss_pred             CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCccc
Confidence            467999975   56899999999999999977668776667788754

>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1

Probab=89.93  E-value=0.22  Score=32.35  Aligned_cols=27  Identities=15%  Similarity=0.385  Sum_probs=22.9

Q ss_pred             cccccCCCCceeeccccccccccCcccC
Q 023005           47 LCERCNSQPALVRCAEERVSLCQNCDWI   74 (289)
Q Consensus        47 LCd~C~~~PA~v~C~~d~a~LC~~CD~~   74 (289)
                      +|..++ .+..+||..|...+|..|...
T Consensus         5 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~   31 (42)
T 1fre_A            5 KCSEHD-ERLKLYCKDDGTLSCVICRDS   31 (42)
T ss_dssp             CCCSSC-SSCCCCCCSSSSSSCCTTSSC
T ss_pred             cchhhC-CeeeEEeCCCCeEEeccCCCC
Confidence            577775 678899999999999999873

>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A

Probab=88.24  E-value=0.19  Score=37.26  Aligned_cols=44  Identities=20%  Similarity=0.536  Sum_probs=33.4

Q ss_pred             ccccccccccCCCCceeeccccccccccCcccC-ccCCCCCCCCCcceecc
Q 023005           42 HSRTLLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTIN   91 (289)
Q Consensus        42 H~RvpLCd~C~~~PA~v~C~~d~a~LC~~CD~~-~H~an~~as~HqR~pL~   91 (289)
                      ..+..+|..+...+..+||..|...+|..|... .|      ..|..+||.
T Consensus        15 ~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~   59 (84)
T 2dja_A           15 HLRGITCLDHENEKVNMYCVSDDQLICALCKLVGRH------RDHQVASLN   59 (84)
T ss_dssp             CSSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTT------TTCCBCCCC
T ss_pred             CCCCCcCcCcCCccccEEcCCCCceEcccCcCCCCC------CCCCccCHH
Confidence            344557888877789999999999999999874 34      356666654

>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=86.06  E-value=0.35  Score=34.15  Aligned_cols=41  Identities=22%  Similarity=0.467  Sum_probs=31.8

Q ss_pred             ccccccccCCCCceeeccccccccccCcccCc-cCCCCCCCCCcceecc
Q 023005           44 RTLLCERCNSQPALVRCAEERVSLCQNCDWIG-HGTSTSASSHKRQTIN   91 (289)
Q Consensus        44 RvpLCd~C~~~PA~v~C~~d~a~LC~~CD~~~-H~an~~as~HqR~pL~   91 (289)
                      +..+|..+. .+..+||..|...+|..|.... |      ..|...||.
T Consensus        13 ~~~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH------~~H~~~~l~   54 (59)
T 2yrg_A           13 KVDHCARHG-EKLLLFCQEDGKVICWLCERSQEH------RGHHTFPTS   54 (59)
T ss_dssp             CSSBCTTTC-CBCCEEETTTCSEECHHHHTSTTT------TTCCEEECC
T ss_pred             cCccChhhC-ceeeeecCCCCcEEecccCCCCcC------CCCcEeeHH
Confidence            345687776 5788999999999999998743 4      477777775

>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}

Probab=84.45  E-value=0.38  Score=36.02  Aligned_cols=43  Identities=21%  Similarity=0.485  Sum_probs=35.7

Q ss_pred             CCCCCccCC---CCeeEEecCCcccccccccccccccccccccccc
Q 023005            2 GYMCDFCGD---QRSIVYCRSDAACLCLSCDRNVHLANALSKRHSR   44 (289)
Q Consensus         2 ~~~Cd~C~~---a~A~vyC~aD~A~LC~~CD~~vHsaN~La~RH~R   44 (289)
                      +..|++|..   .+|+-.|....+.||..|=+..|...+..++|.-
T Consensus        30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L   75 (78)
T 2ffw_A           30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRL   75 (78)
T ss_dssp             CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCC
T ss_pred             CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCcc
Confidence            357999986   6799999999999999998877877666677764

>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=80.99  E-value=0.48  Score=34.34  Aligned_cols=40  Identities=18%  Similarity=0.447  Sum_probs=30.8

Q ss_pred             cccccccCCCCceeeccccccccccCcccCccCCCCCCCCCcceecc
Q 023005           45 TLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTIN   91 (289)
Q Consensus        45 vpLCd~C~~~PA~v~C~~d~a~LC~~CD~~~H~an~~as~HqR~pL~   91 (289)
                      ..+|..+. .+..+||..|...+|..|....|      ..|..+||.
T Consensus        18 ~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H------~~H~~~~l~   57 (72)
T 2csv_A           18 ARKCPVHG-KTMELFCQTDQTCICYLCMFQEH------KNHSTVTVE   57 (72)
T ss_dssp             CCBCTTTC-CBCCEEESSSCCEECHHHHHTTT------SSSCEEEHH
T ss_pred             cCcCcccC-CceEEEeCCCCeEEccccCCCCC------CCCCEecHH
Confidence            35688884 78899999999999999986444      367766654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	289
d2djaa1	71	Midline-2 {Human (Homo sapiens) [TaxId: 9606]}	95.83
d2dq5a1	47	Midline-1 {Human (Homo sapiens) [TaxId: 9606]}	95.7
d2d8ua1	51	Ubiquitin ligase trim63 {Human (Homo sapiens) [Tax	94.63
d2dida1	40	Tripartite motif-containing protein 39 {Human (Hom	92.73
d1frea_	39	Nuclear factor XNF7 {African clawed frog (Xenopus	92.66
d2csva1	59	Tripartite motif-containing protein 29 {Human (Hom	85.62

>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.0016  Score=46.07  Aligned_cols=50  Identities=18%  Similarity=0.496  Sum_probs=40.0

Q ss_pred             cccccccccccccccCCCCceeeccccccccccCcccCccCCCCCCCCCcceecc
Q 023005           37 ALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTIN   91 (289)
Q Consensus        37 ~La~RH~RvpLCd~C~~~PA~v~C~~d~a~LC~~CD~~~H~an~~as~HqR~pL~   91 (289)
                      ++...+.|...|..+...+..+||..|...+|..|...+++     ..|...+|.
T Consensus         3 P~~~~~~r~~~C~~H~~e~l~~fC~~C~~~iC~~C~~~~~H-----k~H~~~~i~   52 (71)
T d2djaa1           3 PVPDTHLRGITCLDHENEKVNMYCVSDDQLICALCKLVGRH-----RDHQVASLN   52 (71)
T ss_dssp             CCCCCCSSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTT-----TTCCBCCCC
T ss_pred             CCCccccCCCcCcccCCccceeEcCCCCceeccccccCCCC-----CCCcCcCHH
Confidence            34556888889999999999999999999999999765422     357776665

>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.0016  Score=43.31  Aligned_cols=44  Identities=23%  Similarity=0.607  Sum_probs=36.6

Q ss_pred             ccccccccccCCCCceeeccccccccccCcccCc-cCCCCCCCCCcceecc
Q 023005           42 HSRTLLCERCNSQPALVRCAEERVSLCQNCDWIG-HGTSTSASSHKRQTIN   91 (289)
Q Consensus        42 H~RvpLCd~C~~~PA~v~C~~d~a~LC~~CD~~~-H~an~~as~HqR~pL~   91 (289)
                      |.|..+|..+..++..+||..|..++|..|...+ |      +.|...+|.
T Consensus         2 ~l~~~~C~~H~~e~l~~yC~~C~~~iC~~C~~~~~H------~~H~~~~l~   46 (47)
T d2dq5a1           2 HIRGLMCLEHEDEKVNMYCVTDDQLICALCKLVGRH------RDHQVAALS   46 (47)
T ss_dssp             CCCCCBCSSCTTSBEEEEETTTTEEEEHHHHHTSST------TSSCCCCSC
T ss_pred             CccCccchhhCCCcceEEcCCCCccCCccCcCcCCc------CCCeEeeCC
Confidence            6788999999999999999999999999997653 5      357666653

>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Ubiquitin ligase trim63
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.63  E-value=0.0063  Score=40.84  Aligned_cols=40  Identities=18%  Similarity=0.479  Sum_probs=33.0

Q ss_pred             ccccccCCCCceeeccccccccccCcccCc-cCCCCCCCCCcceecc
Q 023005           46 LLCERCNSQPALVRCAEERVSLCQNCDWIG-HGTSTSASSHKRQTIN   91 (289)
Q Consensus        46 pLCd~C~~~PA~v~C~~d~a~LC~~CD~~~-H~an~~as~HqR~pL~   91 (289)
                      |+|..+..++..+||..|..++|..|...+ |      +.|...+|.
T Consensus         2 p~C~~H~~e~l~~yC~~c~~~iC~~C~~~~~H------k~H~v~~l~   42 (51)
T d2d8ua1           2 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH------KACEVAPLQ   42 (51)
T ss_dssp             CCCSSCTTCCCCSEESSSCCCCCSHHHHSSST------TSSCEECTT
T ss_pred             CCCcccCcCcceEEcCCCCceECccccCcCCc------CcCcCcCHH
Confidence            689999888999999999999999997653 4      357776664

>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 39
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.73  E-value=0.023  Score=36.40  Aligned_cols=37  Identities=22%  Similarity=0.519  Sum_probs=29.4

Q ss_pred             cccccCCCCceeeccccccccccCcccCc-cCCCCCCCCCcceec
Q 023005           47 LCERCNSQPALVRCAEERVSLCQNCDWIG-HGTSTSASSHKRQTI   90 (289)
Q Consensus        47 LCd~C~~~PA~v~C~~d~a~LC~~CD~~~-H~an~~as~HqR~pL   90 (289)
                      +|..++ ++-.+||..|...+|..|...+ |      ..|..+||
T Consensus         3 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~v~pi   40 (40)
T d2dida1           3 LCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAHTVVPL   40 (40)
T ss_dssp             BCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTSCEEEC
T ss_pred             cchhhC-ccceEEcccCCcEeeccCcCCCCc------CCCcEecC
Confidence            566774 6788999999999999997653 4      46887775

>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Nuclear factor XNF7
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=92.66  E-value=0.038  Score=35.18  Aligned_cols=36  Identities=22%  Similarity=0.410  Sum_probs=27.3

Q ss_pred             ccccCCCCceeeccccccccccCcccCc-cCCCCCCCCCcceec
Q 023005           48 CERCNSQPALVRCAEERVSLCQNCDWIG-HGTSTSASSHKRQTI   90 (289)
Q Consensus        48 Cd~C~~~PA~v~C~~d~a~LC~~CD~~~-H~an~~as~HqR~pL   90 (289)
                      |..++ .+..+||..|...+|..|...+ |      +.|..+||
T Consensus         3 C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~v~pi   39 (39)
T d1frea_           3 CSEHD-ERLKLYCKDDGTLSCVICRDSLKH------ASHNFLPI   39 (39)
T ss_dssp             CCSSC-SSCCCCCCSSSSSSCCTTSSCSSC------TTCCCCCC
T ss_pred             CcccC-cceeEEcccCCcEeeccCcCCCCc------CCCcEeeC
Confidence            55553 5688999999999999997653 4      46777765

>d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 29
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.62  E-value=0.13  Score=34.95  Aligned_cols=40  Identities=18%  Similarity=0.447  Sum_probs=31.4

Q ss_pred             cccccccCCCCceeeccccccccccCcccCccCCCCCCCCCcceecc
Q 023005           45 TLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTIN   91 (289)
Q Consensus        45 vpLCd~C~~~PA~v~C~~d~a~LC~~CD~~~H~an~~as~HqR~pL~   91 (289)
                      ..+|..++ .+-.+||..|...+|..|-...|      .+|..++|.
T Consensus        11 ~~~C~~H~-e~l~lyC~~c~~~iC~~C~~~~H------~~H~~~~l~   50 (59)
T d2csva1          11 ARKCPVHG-KTMELFCQTDQTCICYLCMFQEH------KNHSTVTVE   50 (59)
T ss_dssp             CCBCTTTC-CBCCEEESSSCCEECHHHHHTTT------SSSCEEEHH
T ss_pred             hCchhhhC-CccceECCCCCceECcccCcccC------CCCCeeCHH
Confidence            34788885 68899999999999999965555      368777763