Citrus Sinensis ID: 023008

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
Protein Sequence
MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPADPGASSSSIKSLSGENILDTKSHSLSRRDALMPVAAECKEVLPASSGGVGGFAMNKVSFAGGSAAGSTPSWHMDDFLALPELNQNYSFMDNGSSKADSGKRGDSDSSSILRSAEEELDDDECLGQVPEASWAVPQIPSPPTASGLYWPKNPQNQYDSAFVPDIHHHSQLNRTATRRRLQ
Secondary Structure (PSIPRED)
cccccccccccccEEEcccccccccHHHHHHHHHcccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHccccEEEEEcccHHHHHHHHHHHHHHHHHHHHcccEEEcccccccccccHHHccccEEEEEHHHHHHHHHHcccccccccHHHHHcccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccHHHHcccccccHHHcccccccccccccccccccccccccccccccccccEEccccccccccccccHHHccc
Coil and Loop (DISEMBL)
MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLAskhqrvplsssstqmpkcdicqetsgfffCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKvalepadpgassssikslsgenildtkshslsrrdALMPVAAECKevlpassggvggfaMNKVsfaggsaagstpswhmddflalpelnqnysfmdngsskadsgkrgdsdsssILRSaeeeldddeclgqvpeaswavpqipspptasglywpknpqnqydsafvpdihhhsqlnRTATRRRLQ
Flexible Loop (DISEMBL)
mriqcnvcEAAEAKVLCCADEAALCWECDDKVHAANKLASKhqrvplsssstqmpKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPADPGassssikslsgeniLDTKSHSLSRRDALMPVAAECKEVLPASSGGVGGFAMNKVSFAGGSAAGSTPSWHMDDFLALPELNQNYSFMDNgsskadsgkrgdsDSSSILRSAEEELDDDECLGQVPEASWAVPQIPSPPTASGLYWPKNPQNQYDSAFVPDIhhhsqlnrtatrrrlq
Low Complexity Region (SEG)
MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPADPGAssssikslsGENILDTKSHSLSRRDALMPVAAECKEVLPASSGGVGGFAMNKVSFAGGSAAGSTPSWHMDDFLALPELNQNYSFMDNgsskadsgkrgdsdsssILRSAEEELDDDECLGQVPEASWAVPQIPSPPTASGLYWPKNPQNQYDSAFVPDIHHHSQLNRTATRRRLQ
Disordered region (IsUnstruct)
**IQCNVCEAAEAKVLCCADEAALCWECDDKVHA**********************CDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVAL****************************************CKEVL*****GVGGFAMNKVSFAG********SWHMDDFLALPEL***************************************************************YW********************************
Disordered Region (DISOPRED)
MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVK*******************************************************************************DDFLALPELNQNYSFM*******************ILRS******************W**********************QYDSAFVP******************
Disordered Region (DISEMBL)
MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANK*****************PKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEP************LSGENILDTKSHSLSRRDALMPVAAECKEVLPASSGGVGGFAMNKVSFAGGSAAGSTPSWHMDDFLALPELNQNYSFMDN*****************ILRS********ECLGQVPEASWAVPQIPSPPTASGLYWPKNPQNQYDSAFVPDIHHHS************
Disordered Region (DISPRO)
*RIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALE*****************************************************************AAGSTPSWHMDDFLALPELNQNYSFMDN***********DSDSSSILRSAEEELDDDECLGQVPEASWAVPQIPSPPTASGLYWPKNPQNQYDSAFVPDIH***************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPADPGASSSSIKSLSGENILDTKSHSLSRRDALMPVAAECKEVLPASSGGVGGFAMNKVSFAGGSAAGSTPSWHMDDFLALPELNQNYSFMDNGSSKADSGKRGDSDSSSILRSAEEELDDDECLGQVPEASWAVPQIPSPPTASGLYWPKNPQNQYDSAFVPDIHHHSQLNRTATRRRLQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	288	2.2.26 [Sep-21-2011]
Q9SYM2	299	Probable salt tolerance-l	yes	no	0.975	0.939	0.539	1e-74
Q96288	248	Salt tolerance protein OS	no	no	0.368	0.427	0.679	5e-38
Q9SID1	238	Salt tolerance-like prote	no	no	0.475	0.575	0.537	4e-35
Q9LQZ7	331	Probable salt tolerance-l	no	no	0.861	0.749	0.361	2e-32
Q0IGM7	242	B-box zinc finger protein	no	no	0.406	0.483	0.554	6e-30
Q9SK53	294	Zinc finger protein CONST	no	no	0.392	0.384	0.368	2e-15
O50055	355	Zinc finger protein CONST	no	no	0.288	0.233	0.445	2e-14
Q940T9	362	Zinc finger protein CONST	no	no	0.302	0.240	0.416	8e-14
Q96502	347	Zinc finger protein CONST	no	no	0.288	0.239	0.423	1e-13
Q39057	373	Zinc finger protein CONST	no	no	0.288	0.222	0.391	1e-12

>sp|Q9SYM2|STHY_ARATH Probable salt tolerance-like protein At1g78600 OS=Arabidopsis thaliana GN=At1g78600 PE=1 SV=2

 Score =  280 bits (715), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 163/302 (53%), Positives = 204/302 (67%), Gaps = 21/302 (6%)

Query: 1   MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDIC 60
           M+IQCNVCEAAEA VLCCADEAALCW CD+K+HAANKLA KHQRVPLS+S++ +PKCDIC
Sbjct: 1   MKIQCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPLSASASSIPKCDIC 60

Query: 61  QETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPADPGASSSSIKS 120
           QE SGFFFCLQDRALLCRKCDVAIHT N +VSAHQRFLLTG+KV LE  D G S+ S  +
Sbjct: 61  QEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLTGIKVGLESIDTGPSTKSSPT 120

Query: 121 LSGENILDTKS--HSLSRRDALMPVAAECKEVLPASSGGVGGFAMNKVS------FAGGS 172
            + +  ++TK    S+     +       ++      G + G  +N  +       + GS
Sbjct: 121 -NDDKTMETKPFVQSIPEPQKMAFDHHHHQQQQEQQEGVIPGTKVNDQTSTKLPLVSSGS 179

Query: 173 AAGSTPSWHMDDFLALPELNQNYSFMD-NGSSKADSGKRGDSDSSSILRSAEEE-LDDDE 230
             GS P W +++   L + +Q+Y +M+ NGSSKAD+ +RGDSDSSS++RSAEE+  D++ 
Sbjct: 180 TTGSIPQWQIEEIFGLTDFDQSYEYMENNGSSKADTSRRGDSDSSSMMRSAEEDGEDNNN 239

Query: 231 CLGQVPEASWAVPQIPSPPTASGLYWPKNPQNQYDSAFVPDIHHHSQLN------RTATR 284
           CLG   E SWAVPQI SPPTASGL WPK+    + S FVPDI   +         R   R
Sbjct: 240 CLGG--ETSWAVPQIQSPPTASGLNWPKH--FHHHSVFVPDITSSTPYTGSSPNQRVGKR 295

Query: 285 RR 286
           RR
Sbjct: 296 RR 297

Arabidopsis thaliana (taxid: 3702)

>sp|Q96288|STO_ARATH Salt tolerance protein OS=Arabidopsis thaliana GN=STO PE=1 SV=1

 Score =  158 bits (399), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 72/106 (67%), Positives = 88/106 (83%)

Query: 1   MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDIC 60
           M+IQC+VCE A A V+CCADEAALC +CD ++HAANKLASKHQR+ L+S ST+ P+CDIC
Sbjct: 1   MKIQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDIC 60

Query: 61  QETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVAL 106
           QE + F FC++DRALLCR CD +IH ANS  + HQRFL TG+KVAL
Sbjct: 61  QEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFLATGIKVAL 106

May act as a transcription factor in the salt-stress response.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SID1|STH_ARATH Salt tolerance-like protein OS=Arabidopsis thaliana GN=STH PE=1 SV=2

 Score =  148 bits (374), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 78/145 (53%), Positives = 97/145 (66%), Gaps = 8/145 (5%)

Query: 1   MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDIC 60
           M+IQC+VCE A A ++CCADEAALC +CD +VHAANKLASKHQR+ L S ST+ P CDIC
Sbjct: 1   MKIQCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFLDSLSTKFPPCDIC 60

Query: 61  QETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPADPGASSSSIKS 120
            E + F FC++DRALLCR CD A H  N+  + HQRFL TG++VAL       SS+S   
Sbjct: 61  LEKAAFIFCVEDRALLCRDCDEATHAPNTRSANHQRFLATGIRVAL-------SSTSCNQ 113

Query: 121 LSGENILD-TKSHSLSRRDALMPVA 144
              +N  D +   SLS+     P A
Sbjct: 114 EVEKNHFDPSNQQSLSKPPTQQPAA 138

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQZ7|STHX_ARATH Probable salt tolerance-like protein At1g75540 OS=Arabidopsis thaliana GN=At1g75540 PE=1 SV=1

 Score =  139 bits (351), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/282 (36%), Positives = 139/282 (49%), Gaps = 34/282 (12%)

Query: 1   MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPL---SSSSTQMPKC 57
           M+I+C+VC+  EA V C ADEA+LC  CD +VH ANKLASKH R  L   SSS+T  P C
Sbjct: 1   MKIRCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLC 60

Query: 58  DICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPADPGASSSS 117
           DICQ+     FC QDRA+LC+ CD +IH AN +   H RFLLTGVK++   +    +S S
Sbjct: 61  DICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLLTGVKLSATSSVYKPTSKS 120

Query: 118 IKSLSGENILDTKSHSLSRRDAL-MPVAA--ECKEVLPASSGGVGGFAMNK---VSFAGG 171
             S S          S+S    L  P++A  +  ++ P S    G  ++N+    S    
Sbjct: 121 SSSSSSNQDFSVPGSSISNPPPLKKPLSAPPQSNKIQPFSKINGGDASVNQWGSTSTISE 180

Query: 172 SAAGSTPSWHMDDFL--ALPELNQNYSFMDNGSSKADSGKRGDSDSSSILRSAEEELDDD 229
               + P WH++DFL  +LP     Y F           K GD D   +L   E E D++
Sbjct: 181 YLMDTLPGWHVEDFLDSSLP----TYGF----------SKSGDDD--GVLPYMEPEDDNN 224

Query: 230 ECLGQVPEASWAVPQIPSPPTASGLYWPKNPQ-------NQY 264
                    +     +  P    G++ P+ PQ       NQY
Sbjct: 225 TKRNNNNNNNNNNNTVSLPSKNLGIWVPQIPQTLPSSYPNQY 266

Arabidopsis thaliana (taxid: 3702)

>sp|Q0IGM7|BBX20_ARATH B-box zinc finger protein 20 OS=Arabidopsis thaliana GN=BBX20 PE=1 SV=1

 Score =  131 bits (329), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 66/119 (55%), Positives = 80/119 (67%), Gaps = 2/119 (1%)

Query: 1   MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQ-MPKCDI 59
           M+I C VC+  EA V CCADEAALC  CD  VH ANKLA KH R  L+S + +  P CDI
Sbjct: 1   MKIWCAVCDKEEASVFCCADEAALCNGCDRHVHFANKLAGKHLRFSLTSPTFKDAPLCDI 60

Query: 60  CQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEP-ADPGASSSS 117
           C E     FC +DRA+LCR+CD+ IH AN +   H RFLLTGVK++  P A P AS+S+
Sbjct: 61  CGERRALLFCQEDRAILCRECDIPIHQANEHTKKHNRFLLTGVKISASPSAYPRASNSN 119

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK53|COL3_ARATH Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1

 Score = 82.8 bits (203), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/122 (36%), Positives = 65/122 (53%), Gaps = 9/122 (7%)

Query: 5   CNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETS 64
           C+ C++  A + C AD A LC +CD K+H ANKLAS+H+RV L         C++C++  
Sbjct: 8   CDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWL---------CEVCEQAP 58

Query: 65  GFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPADPGASSSSIKSLSGE 124
               C  D A LC  CD  IH+AN     H+R  +T    A+ PA   +SS +     G 
Sbjct: 59  AHVTCKADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPAKSASSSVNFVDEDGG 118

Query: 125 NI 126
           ++
Sbjct: 119 DV 120

Arabidopsis thaliana (taxid: 3702)

>sp|O50055|COL1_ARATH Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1

 Score = 80.1 bits (196), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 50/92 (54%), Gaps = 9/92 (9%)

Query: 5  CNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETS 64
          C+ C +A   V C AD A LC  CD +VHAAN+LAS+H+RV +         C  C+   
Sbjct: 12 CDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRV---------CQSCERAP 62

Query: 65 GFFFCLQDRALLCRKCDVAIHTANSYVSAHQR 96
            FFC  D A LC  CD  IH+AN     HQR
Sbjct: 63 AAFFCKADAASLCTTCDSEIHSANPLARRHQR 94

Putative transcription factor that may be involved in the light input to the circadian clock but does not affect flowering time.

Arabidopsis thaliana (taxid: 3702)

>sp|Q940T9|COL4_ARATH Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2

 Score = 77.8 bits (190), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 40/96 (41%), Positives = 53/96 (55%), Gaps = 9/96 (9%)

Query: 5   CNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETS 64
           C+ C++A A + C  D A LC  CD KVHAANKLAS+H RV +         C++C++  
Sbjct: 6   CDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWM---------CEVCEQAP 56

Query: 65  GFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLT 100
               C  D A LC  CD  IH+AN     H+R  +T
Sbjct: 57  AHVTCKADAAALCVTCDRDIHSANPLARRHERVPVT 92

Arabidopsis thaliana (taxid: 3702)

>sp|Q96502|COL2_ARATH Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1

 Score = 77.8 bits (190), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 49/92 (53%), Gaps = 9/92 (9%)

Query: 5  CNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETS 64
          C+ C +A   V C AD A LC  CD +VHAAN++AS+H+RV +         C  C+   
Sbjct: 16 CDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRV---------CQSCESAP 66

Query: 65 GFFFCLQDRALLCRKCDVAIHTANSYVSAHQR 96
            F C  D A LC  CD  IH+AN     HQR
Sbjct: 67 AAFLCKADAASLCTACDAEIHSANPLARRHQR 98

Putative transcription factor. Does not affect flowering time.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39057|CONS_ARATH Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1

 Score = 73.9 bits (180), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 49/92 (53%), Gaps = 9/92 (9%)

Query: 5   CNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETS 64
           C+ C +    V C AD A LC  CD +VH+AN++AS+H+RV +         C+ C+   
Sbjct: 20  CDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRV---------CESCERAP 70

Query: 65  GFFFCLQDRALLCRKCDVAIHTANSYVSAHQR 96
             F C  D A LC  CD  +H+AN     HQR
Sbjct: 71  AAFLCEADDASLCTACDSEVHSANPLARRHQR 102

Putative transcription factor that acts in the long day flowering pathway and may mediate between the circadian clock and the control of flowering. Plays a role in the regulation of flowering time by acting on 'SUPPRESSOR OF OVEREXPRESSION OF CO1', 'TERMINAL FLOWER 1' and 'FLOWERING LOCUS T'. Also regulates P5CS2 and ACS10 (involved in proline and ethylene biosynthesis, respectively).

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
224114744	298	predicted protein [Populus trichocarpa]	1.0	0.966	0.696	1e-109
255567122	290	zinc finger protein, putative [Ricinus c	0.979	0.972	0.698	1e-107
225461798	293	PREDICTED: probable salt tolerance-like	0.996	0.979	0.668	1e-104
449438905	297	PREDICTED: probable salt tolerance-like	0.996	0.966	0.646	1e-98
356544134	374	PREDICTED: probable salt tolerance-like	0.979	0.754	0.632	2e-98
356549614	293	PREDICTED: probable salt tolerance-like	0.996	0.979	0.638	1e-95
302398743	289	COL domain class transcription factor [M	0.934	0.930	0.599	9e-93
356530643	292	PREDICTED: probable salt tolerance-like	0.982	0.969	0.641	1e-92
297839731	290	zinc finger (B-box type) family protein	0.968	0.962	0.576	1e-77
356544136	294	PREDICTED: probable salt tolerance-like	0.680	0.666	0.693	7e-76

>gi|224114744|ref|XP_002316844.1| predicted protein [Populus trichocarpa] gi|222859909|gb|EEE97456.1| predicted protein [Populus trichocarpa]

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/297 (69%), Positives = 241/297 (81%), Gaps = 9/297 (3%)

Query: 1   MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDIC 60
           M+IQCNVCEAAEAKVLCCADEAALCW CD+KVHAANKLASKHQR+PLS+SS QMPKCDIC
Sbjct: 1   MKIQCNVCEAAEAKVLCCADEAALCWTCDEKVHAANKLASKHQRIPLSTSSPQMPKCDIC 60

Query: 61  QETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPADPGASSSSIKS 120
           QET+GFFFCL+DRALLCRKCDVAIHTAN++VS HQRFLLTGVKV LEP DPGASSSS KS
Sbjct: 61  QETAGFFFCLEDRALLCRKCDVAIHTANTHVSVHQRFLLTGVKVGLEPTDPGASSSSGKS 120

Query: 121 LSGE-NILDTKSHSLSRRDALMPVAAECKEVLPASSGGVGGFAMNKVSFAGGSAAGSTPS 179
            SGE   L+TKS  +SRR  L+P+A  C +V   +  GVG F   K+ ++GGSA  S   
Sbjct: 121 PSGEKKTLETKSRPVSRRGTLLPLANPCNQVSTVNVCGVGDFGPAKLPYSGGSATSSISQ 180

Query: 180 WHMDDFLALPELNQNYSFMDNGSSKADSGKRGDSDSSSILRSAEEELDDDECLGQVPEAS 239
           WH+D+FL LPE NQNY ++DNGSSKADSGKRGDSD S+ILRS EEE+DD+ECLGQVP++S
Sbjct: 181 WHIDEFLDLPEFNQNYGYIDNGSSKADSGKRGDSDCSAILRSTEEEVDDEECLGQVPDSS 240

Query: 240 WAVPQIPSPPTASGLYWPKNPQNQYDSA-FVPDI-------HHHSQLNRTATRRRLQ 288
            AVPQIPSPPTASGLYWPK+  N  ++A FVPDI        H+S+   T ++R+ Q
Sbjct: 241 RAVPQIPSPPTASGLYWPKSFHNHSETAIFVPDICCSVVQNCHYSEQRGTVSKRQRQ 297

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567122|ref|XP_002524543.1| zinc finger protein, putative [Ricinus communis] gi|223536217|gb|EEF37870.1| zinc finger protein, putative [Ricinus communis]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/295 (69%), Positives = 228/295 (77%), Gaps = 13/295 (4%)

Query: 1   MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDIC 60
           M+IQCNVCEAAEA VLCCADEAALCW CD+KVHAANKLASKHQRVPLS+SS+ +P CDIC
Sbjct: 1   MKIQCNVCEAAEANVLCCADEAALCWGCDEKVHAANKLASKHQRVPLSTSSSHIPNCDIC 60

Query: 61  QETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPADPGASSSSIKS 120
           QET+GFFFCL+DRALLCRKCDVAIHTAN+YVS HQRFLLTGVKV LEP D GASSSS KS
Sbjct: 61  QETAGFFFCLEDRALLCRKCDVAIHTANAYVSGHQRFLLTGVKVGLEPTDLGASSSSGKS 120

Query: 121 LSGENILDTKSHSLSRRDALMPVAAECKEVLPASSGGVGGFAMNKVSFAGGSAAGSTPSW 180
            S E   +  SHS+SRR   MPVA+     LPA   G G     KVS+ GG AAG  P W
Sbjct: 121 PSSEKTSEMISHSVSRRGNPMPVASPHNYALPAQVSGAGEVEQAKVSYFGG-AAGGMPPW 179

Query: 181 HMDDFLALPELNQNYSFMDNGSSKADSGKRGDSDSSSILRSAEEELDDDECLGQVPEASW 240
            +D+FL L + NQNY  MDNGSSKADSGKR DS+SS+ LRSA+EE+D DECLGQVP++SW
Sbjct: 180 QIDEFLGLSDFNQNYGNMDNGSSKADSGKRSDSESSAFLRSADEEVDGDECLGQVPDSSW 239

Query: 241 AVPQIPSPPTASGLYWPKNPQNQYDSA-FVPDI-------HHHSQLNRTATRRRL 287
           AVPQIPSPPT+SGLYWPK   NQ D A FVPDI       HHH      A RRRL
Sbjct: 240 AVPQIPSPPTSSGLYWPKRIHNQSDGADFVPDICCSTLQNHHHYH----AKRRRL 290

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461798|ref|XP_002283666.1| PREDICTED: probable salt tolerance-like protein At1g78600 [Vitis vinifera] gi|302142816|emb|CBI20111.3| unnamed protein product [Vitis vinifera]

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/293 (66%), Positives = 226/293 (77%), Gaps = 6/293 (2%)

Query: 1   MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDIC 60
           M+IQCNVCEAAEA VLCCADEAALCW CD+KVHAANKLASKHQRVPLS+SS+QMPKCDIC
Sbjct: 1   MKIQCNVCEAAEANVLCCADEAALCWACDEKVHAANKLASKHQRVPLSTSSSQMPKCDIC 60

Query: 61  QETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPADPGASSSSIKS 120
           QET G+FFCL+DRALLCRKCDV+IHTAN+YVSAHQRFLLTGVKV LEP  PG+SSS  KS
Sbjct: 61  QETVGYFFCLEDRALLCRKCDVSIHTANTYVSAHQRFLLTGVKVGLEPTQPGSSSSMGKS 120

Query: 121 -LSGENILDTKSHSLSRRDALMPVAAECKEVLPASSGGVGGFAMNKVSFAGGSAAG-STP 178
            L G++  +T+S S SRR A MP+  +  + L   +GG G F   KVSFAGGS +  S P
Sbjct: 121 NLVGKHS-ETESPSASRRGAPMPLTCDYNKTLSIQAGGAGDFVPTKVSFAGGSGSTESIP 179

Query: 179 SWHMDDFLALPELNQNYSFMDNGSSKADSGKRGDSDSSSILRSAEEELDDDECLGQVPEA 238
            WH+D+   L E NQ Y  MDNG+SKAD GK GDSD S  LR+A+EEL+ D+CLGQVPE 
Sbjct: 180 QWHIDELFGLNEFNQTYDCMDNGTSKADIGKLGDSDCSPTLRAADEELNFDDCLGQVPET 239

Query: 239 SWAVPQIPSPPTASGLYWPKNPQNQYD-SAFVPDIHHH--SQLNRTATRRRLQ 288
           +W VPQI SPPTASGLYWPK+ Q   D S FVPDI +      N +AT+ R Q
Sbjct: 240 TWMVPQISSPPTASGLYWPKSSQISSDTSVFVPDICYSPVQMQNESATKCRRQ 292

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438905|ref|XP_004137228.1| PREDICTED: probable salt tolerance-like protein At1g78600-like [Cucumis sativus] gi|449483185|ref|XP_004156516.1| PREDICTED: probable salt tolerance-like protein At1g78600-like [Cucumis sativus]

 Score =  365 bits (938), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 192/297 (64%), Positives = 220/297 (74%), Gaps = 10/297 (3%)

Query: 1   MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDIC 60
           M+IQCNVCE AEA VLCCADEAALCW CD+K+HAANKLASKHQRVPLS SS+QMPKCDIC
Sbjct: 1   MKIQCNVCEMAEATVLCCADEAALCWACDEKIHAANKLASKHQRVPLSGSSSQMPKCDIC 60

Query: 61  QETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPADPGASSSSIKS 120
           QE SG+ FCL+DRALLCRKCDVAIHTAN+YV+ HQRFLLTGVKVALEP DP A SS  KS
Sbjct: 61  QEASGYIFCLEDRALLCRKCDVAIHTANTYVTGHQRFLLTGVKVALEPTDPVACSSMAKS 120

Query: 121 LSGENILDTKSHSLSRRDALMPVAAECKEVLPASSGGVGGFAMNK--VSFAGGSAAGSTP 178
            S E   + K    S R+  MP  +E    L +  GG   F  N+  ++ +G S +G   
Sbjct: 121 HSREKSTEIKIRPPSEREFAMPSPSELSRSL-SVLGGSEDFMANRTLLTGSGDSGSGGFS 179

Query: 179 SWHMDDFLALPELNQNYSFMDNGSSKADSGKRGDSDSSSILRSAEEEL-DDDECLGQVPE 237
            W MD+ ++L   NQNY +MDNGSSKADSGK GDSDSS +LR+A+ EL DDDECLGQVPE
Sbjct: 180 QWQMDELISLTGFNQNYGYMDNGSSKADSGKLGDSDSSPVLRAADIELDDDDECLGQVPE 239

Query: 238 ASWAVPQIPSPPTASGLYWPKNPQNQYDSA-FVPDI-----HHHSQLNRTATRRRLQ 288
           ASWAVPQIPSPPTASGLYWP++  N  D A FVPDI       H   N T ++RR Q
Sbjct: 240 ASWAVPQIPSPPTASGLYWPRSYHNSMDGAVFVPDICSSEKVQHCSRNGTFSKRRRQ 296

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544134|ref|XP_003540510.1| PREDICTED: probable salt tolerance-like protein At1g78600-like isoform 1 [Glycine max]

 Score =  364 bits (934), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 186/294 (63%), Positives = 222/294 (75%), Gaps = 12/294 (4%)

Query: 1   MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDIC 60
           M+IQCNVCEAAEAKVLCCADEA LCWECD+KVHAANKLASKHQRVPLS+SS+ MPKCDIC
Sbjct: 83  MKIQCNVCEAAEAKVLCCADEAGLCWECDEKVHAANKLASKHQRVPLSTSSSHMPKCDIC 142

Query: 61  QETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPADPGASSSSIKS 120
           QE  G+FFCL+DRALLCRKCDVAIHTAN+YVS HQRFLLTGV+V LE  DPGASS+S+KS
Sbjct: 143 QEALGYFFCLEDRALLCRKCDVAIHTANAYVSGHQRFLLTGVRVGLEATDPGASSTSLKS 202

Query: 121 LSGENILDTKSHSLSRRDALMPVAAECKEVLPASSGGVGGFAMNKVSFAGGSAAGSTPSW 180
            SGE + D+   S+SR+ +  P  +   EVLPA  GGVG F   KVSF GGS AG+   W
Sbjct: 203 DSGEKVSDS---SVSRKVSTAPQPSNYNEVLPAEVGGVGEFPSAKVSFGGGSTAGNISQW 259

Query: 181 HMDDFLALPELNQNYSFMDNGSSKADSGKRGDSDSSSILRSAEEELDDDECLGQVPEASW 240
            +D+F+ L E +QNY +M+ GSS+AD GK GDSDS  +    EE  ++D+ L +VP++SW
Sbjct: 260 TIDEFIGLNEFSQNYDYME-GSSRADGGKLGDSDSPVLRSGEEEMEEEDDYLERVPDSSW 318

Query: 241 AVPQIPSPPTASGLYWPKNPQNQYDSA----FVPDIH----HHSQLNRTATRRR 286
            VPQIPSPPT+SGL WPK+  N Y S+    FVPDI       SQ++    RRR
Sbjct: 319 TVPQIPSPPTSSGLCWPKDHTNLYGSSDSVLFVPDISFSHLQQSQISIFLRRRR 372

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549614|ref|XP_003543187.1| PREDICTED: probable salt tolerance-like protein At1g78600-like [Glycine max]

 Score =  355 bits (911), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 187/293 (63%), Positives = 223/293 (76%), Gaps = 6/293 (2%)

Query: 1   MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDIC 60
           M+IQCNVCEAAEAKVLCCADEAALCWECD+KVHAANKLASKHQRVPLS+SS+ MPKCDIC
Sbjct: 1   MKIQCNVCEAAEAKVLCCADEAALCWECDEKVHAANKLASKHQRVPLSTSSSHMPKCDIC 60

Query: 61  QETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPADPGASSSSIKS 120
           QE  G+FFCL+DRALLCRKCDVAIHTAN+YVS HQRFLLTGV+V LE  DPGAS +S+KS
Sbjct: 61  QEALGYFFCLEDRALLCRKCDVAIHTANAYVSGHQRFLLTGVRVGLEAIDPGASLTSLKS 120

Query: 121 LSGENILDTKSHSLSRRDALMPVAAECKEVLPASSGGVGGFAMNKVSFAGGSAAGSTPSW 180
            SGE + DTKS S+SR+ + +P  +   EVLP   GGVG F   KVSF GGS  G+   W
Sbjct: 121 DSGEKVSDTKSSSVSRKVSTVPQPSNYNEVLPIEVGGVGEFPPAKVSFGGGSTDGNISQW 180

Query: 181 HMDDFLALPELNQNYSFMDNGSSKADSGKRGDSDSSSILRSAEEELDDDECLGQVPEASW 240
            +D+F+ L E +Q+Y +M+ GSS+AD GK GDSDS  +    E+  ++D+ L +VP++SW
Sbjct: 181 TIDEFIGLNEFSQHYDYME-GSSRADGGKLGDSDSPVLKSGEEDMEEEDDYLERVPDSSW 239

Query: 241 AVPQIPSPPTASGLYWPKNPQNQYDSA-FVPDIH----HHSQLNRTATRRRLQ 288
            VPQIPSPPTASGL WPK+PQ   DS  FVPDI       SQ++    RR  Q
Sbjct: 240 TVPQIPSPPTASGLCWPKDPQYSSDSVLFVPDISFSLIQQSQISSICLRRWRQ 292

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398743|gb|ADL36666.1| COL domain class transcription factor [Malus x domestica]

 Score =  345 bits (886), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 184/307 (59%), Positives = 218/307 (71%), Gaps = 38/307 (12%)

Query: 1   MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDIC 60
           M+IQCNVCEAAEA VLCCADEAALCW CD+KVH ANKLASKHQRVPL SS   MPKCDIC
Sbjct: 1   MKIQCNVCEAAEANVLCCADEAALCWACDEKVHKANKLASKHQRVPLCSS--HMPKCDIC 58

Query: 61  QETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPADP--------- 111
           QE  G+FFCL+DRALLCRKCDV++HTANS+VSAH+RFLLTG+KV  EPA+P         
Sbjct: 59  QEAVGYFFCLEDRALLCRKCDVSVHTANSFVSAHRRFLLTGIKVGPEPAEPDSGEGDGVC 118

Query: 112 -GASSSSIKSLSGENILDTKSHSLSRRDALMPVAAECKEVLPASSGGVGGFAMNKVSFAG 170
            GASSS++K  SG       S S+SR +   P+  ECK   P   G         +SF G
Sbjct: 119 VGASSSTMKLHSG-------SASVSRYETHNPLHVECKAAAPPGGG---------ISFTG 162

Query: 171 GSAAGSTPSWHMDDFLALPELNQNYSFMDNGSSKADSGKRGDSDSSSILRSAEEELDDDE 230
           GSAAGS P  ++D+FL   +L+Q++ ++DNGSSKAD  K G  D S +LRS+EEEL D E
Sbjct: 163 GSAAGSVPQCYIDEFLGFSDLDQSFDYIDNGSSKADCSKLGGYD-SPVLRSSEEELVDYE 221

Query: 231 CLGQVPEASWAVPQIPSPPTASGLYWPKNPQNQYDSA--FVPDIHH-------HSQLNRT 281
           C+G+VPE SW VPQ+PSPPTASGLYWPK+ QN  DS+  FVPDI H        SQ N T
Sbjct: 222 CIGEVPETSWMVPQVPSPPTASGLYWPKSFQNPSDSSTMFVPDICHSQMQNPLRSQHNGT 281

Query: 282 ATRRRLQ 288
            ++RR Q
Sbjct: 282 ISKRRRQ 288

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530643|ref|XP_003533890.1| PREDICTED: probable salt tolerance-like protein At1g78600-like [Glycine max]

 Score =  345 bits (886), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 190/296 (64%), Positives = 224/296 (75%), Gaps = 13/296 (4%)

Query: 1   MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDIC 60
           M+IQCNVCEAAEAKVLCCADEAALCWECD+KVHAANKLASKHQRVPLS S++ MPKCDIC
Sbjct: 1   MKIQCNVCEAAEAKVLCCADEAALCWECDEKVHAANKLASKHQRVPLSLSASHMPKCDIC 60

Query: 61  QETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPADPGASSSSIKS 120
           QE  G+FFCL+DRALLCR CDV+IHTAN+ VS HQRFLLTGV+V LE  + GASSSS+KS
Sbjct: 61  QEMVGYFFCLEDRALLCRNCDVSIHTANACVSDHQRFLLTGVRVGLEATERGASSSSVKS 120

Query: 121 LSGENILDTKSHSLSRRDALMPVAAECKEVLPASSGGVGGFAMNKVSFAGGSAAGSTPSW 180
            SGE + D KS S+SR  + +P  +   EVLP    GV  F  +  S   G  +G+   W
Sbjct: 121 QSGEKMSDAKSSSISRNVSSLPQPSNANEVLPLQMQGVEEFPPSNFS---GYTSGNVSQW 177

Query: 181 HMDDFLALPELNQNYSFMDNGSSKADSGKRGDSDSSSILRSAEEELDDDECLGQVPEASW 240
            +++FL L EL+Q Y++MD GSSKADSGK GDSD SS+LRS EE++DDD  LG+VP++SW
Sbjct: 178 PIEEFLGLNELSQYYNYMD-GSSKADSGKLGDSD-SSVLRSGEEDMDDDGFLGRVPDSSW 235

Query: 241 AVPQIPSPPTASGLYWPKNPQNQYDSAF-VPDI-------HHHSQLNRTATRRRLQ 288
            VPQIPSPPTASGLYWPK PQ   DSA  VPDI        HH+Q N   ++RR Q
Sbjct: 236 TVPQIPSPPTASGLYWPKVPQYTSDSAMSVPDICFSHVRQPHHAQHNSNVSKRRRQ 291

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839731|ref|XP_002887747.1| zinc finger (B-box type) family protein [Arabidopsis lyrata subsp. lyrata] gi|297333588|gb|EFH64006.1| zinc finger (B-box type) family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 170/295 (57%), Positives = 206/295 (69%), Gaps = 16/295 (5%)

Query: 1   MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDIC 60
           M+IQCNVCEAAEA VLCCADEAALCW CD+KVHAANKLA KHQRVPLS SS+ +PKCDIC
Sbjct: 1   MKIQCNVCEAAEATVLCCADEAALCWACDEKVHAANKLAGKHQRVPLSVSSSSIPKCDIC 60

Query: 61  QETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPADPGASSSSIKS 120
           QE SGFFFCLQDRALLCRKCDVAIHT N +VSAHQRFLLTG+KV LE  D G S+ S  +
Sbjct: 61  QEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLTGIKVGLESIDTGPSTKSSPT 120

Query: 121 LSGENILDTKSHSLSRRDALMPVAAECKEVLPASSGGVGGFAMNKVSFA-GGSAAGSTPS 179
            + +  ++TKS   S  +       + + VLP +   V      K+ FA  GS  GS P 
Sbjct: 121 -NDDKTMETKSFVQSIPEPQKMGFDQQQGVLPETK--VSDHTSTKLPFASSGSTTGSIPQ 177

Query: 180 WHMDDFLALPELNQNYSFMD-NGSSKADSGKRGDSDSSSILRSAEEE-LDDDECLGQVPE 237
           W +++   L + +Q+Y +M+ NGSSKAD+ +RGDSDSSS++RSAEE+  D++ CLG   E
Sbjct: 178 WQIEEIFGLTDFDQSYEYMENNGSSKADTCRRGDSDSSSMMRSAEEDGEDNNNCLGG--E 235

Query: 238 ASWAVPQIPSPPTASGLYWPKNPQNQYDSAFVPDIHHHSQLN------RTATRRR 286
            SWAVPQI SPPTASGL WPK+    + S FVPDI+  +         R   RRR
Sbjct: 236 TSWAVPQIQSPPTASGLNWPKH--FHHHSVFVPDINSSTPYTGSSPNQRVGKRRR 288

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544136|ref|XP_003540511.1| PREDICTED: probable salt tolerance-like protein At1g78600-like isoform 2 [Glycine max]

 Score =  290 bits (741), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 138/199 (69%), Positives = 161/199 (80%), Gaps = 3/199 (1%)

Query: 1   MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDIC 60
           M+IQCNVCEAAEAKVLCCADEA LCWECD+KVHAANKLASKHQRVPLS+SS+ MPKCDIC
Sbjct: 83  MKIQCNVCEAAEAKVLCCADEAGLCWECDEKVHAANKLASKHQRVPLSTSSSHMPKCDIC 142

Query: 61  QETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPADPGASSSSIKS 120
           QE  G+FFCL+DRALLCRKCDVAIHTAN+YVS HQRFLLTGV+V LE  DPGASS+S+KS
Sbjct: 143 QEALGYFFCLEDRALLCRKCDVAIHTANAYVSGHQRFLLTGVRVGLEATDPGASSTSLKS 202

Query: 121 LSGENILDTKSHSLSRRDALMPVAAECKEVLPASSGGVGGFAMNKVSFAGGSAAGSTPSW 180
            SGE + D+   S+SR+ +  P  +   EVLPA  GGVG F   KVSF GGS AG+   W
Sbjct: 203 DSGEKVSDS---SVSRKVSTAPQPSNYNEVLPAEVGGVGEFPSAKVSFGGGSTAGNISQW 259

Query: 181 HMDDFLALPELNQNYSFMD 199
            +D+F+ L E +QNY +M+
Sbjct: 260 TIDEFIGLNEFSQNYDYME 278

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
TAIR|locus:2198841	248	STO "SALT TOLERANCE" [Arabidop	0.368	0.427	0.679	2.4e-37
TAIR|locus:2061330	238	STH "salt tolerance homologue"	0.368	0.445	0.641	1.3e-36
TAIR|locus:2005624	331	BBX21 "B-box domain protein 21	0.656	0.570	0.4	1.2e-35
TAIR|locus:2122759	162	bbx23 "B-box domain protein 23	0.350	0.623	0.612	3.3e-31
TAIR|locus:2120207	242	BZS1 "BZS1" [Arabidopsis thali	0.663	0.789	0.415	6.9e-31
TAIR|locus:2050130	172	BBX18 "B-box domain protein 18	0.368	0.616	0.481	1.1e-23
TAIR|locus:2047246	294	COL3 "CONSTANS-like 3" [Arabid	0.333	0.326	0.4	3.7e-16
TAIR|locus:2143221	355	COL1 "CONSTANS-like 1" [Arabid	0.288	0.233	0.445	7e-16
UNIPROTKB|Q9FRZ7	342	Hd1 "Hd1 protein" [Oryza sativ	0.333	0.280	0.390	3.7e-15
TAIR|locus:2074587	347	COL2 "CONSTANS-like 2" [Arabid	0.288	0.239	0.423	3.9e-15

TAIR|locus:2198841 STO "SALT TOLERANCE" [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 72/106 (67%), Positives = 88/106 (83%)

Query:     1 MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDIC 60
             M+IQC+VCE A A V+CCADEAALC +CD ++HAANKLASKHQR+ L+S ST+ P+CDIC
Sbjct:     1 MKIQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDIC 60

Query:    61 QETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVAL 106
             QE + F FC++DRALLCR CD +IH ANS  + HQRFL TG+KVAL
Sbjct:    61 QEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFLATGIKVAL 106

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009640 "photomorphogenesis" evidence=IGI

GO:0080167 "response to karrikin" evidence=IEP

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009651 "response to salt stress" evidence=IGI;RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0003677 "DNA binding" evidence=ISS

TAIR|locus:2061330 STH "salt tolerance homologue" [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
 Identities = 68/106 (64%), Positives = 83/106 (78%)

Query:     1 MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDIC 60
             M+IQC+VCE A A ++CCADEAALC +CD +VHAANKLASKHQR+ L S ST+ P CDIC
Sbjct:     1 MKIQCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFLDSLSTKFPPCDIC 60

Query:    61 QETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVAL 106
              E + F FC++DRALLCR CD A H  N+  + HQRFL TG++VAL
Sbjct:    61 LEKAAFIFCVEDRALLCRDCDEATHAPNTRSANHQRFLATGIRVAL 106

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0019904 "protein domain specific binding" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:2005624 BBX21 "B-box domain protein 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
 Identities = 80/200 (40%), Positives = 108/200 (54%)

Query:     1 MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPL---SSSSTQMPKC 57
             M+I+C+VC+  EA V C ADEA+LC  CD +VH ANKLASKH R  L   SSS+T  P C
Sbjct:     1 MKIRCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLC 60

Query:    58 DICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPADPGAXXXX 117
             DICQ+     FC QDRA+LC+ CD +IH AN +   H RFLLTGVK++   +        
Sbjct:    61 DICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLLTGVKLSATSSVYKPTSKS 120

Query:   118 XXXXXGENILDTKSHSLSRRDALM-PVAA--ECKEVLPASSGGVGGFAMNK---VSFAGG 171
                            S+S    L  P++A  +  ++ P S    G  ++N+    S    
Sbjct:   121 SSSSSSNQDFSVPGSSISNPPPLKKPLSAPPQSNKIQPFSKINGGDASVNQWGSTSTISE 180

Query:   172 SAAGSTPSWHMDDFL--ALP 189
                 + P WH++DFL  +LP
Sbjct:   181 YLMDTLPGWHVEDFLDSSLP 200

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009641 "shade avoidance" evidence=IGI;IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

TAIR|locus:2122759 bbx23 "B-box domain protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 68/111 (61%), Positives = 81/111 (72%)

Query:     1 MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPL---SSSSTQM--- 54
             M+IQC VCE AEA+VLCC+DEA LC  CD KVH ANKL  +H RV L   ++S+T     
Sbjct:     1 MKIQCEVCEKAEAEVLCCSDEAVLCKPCDIKVHEANKLFQRHHRVALQKDAASATTASGA 60

Query:    55 PKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVA 105
             P CDICQE  G+FFCL+DRA+LC  CD AIHT NS    HQRFLL+GV+V+
Sbjct:    61 PLCDICQERKGYFFCLEDRAMLCNDCDEAIHTCNS----HQRFLLSGVQVS 107

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2120207 BZS1 "BZS1" [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 91/219 (41%), Positives = 112/219 (51%)

Query:     1 MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQ-MPKCDI 59
             M+I C VC+  EA V CCADEAALC  CD  VH ANKLA KH R  L+S + +  P CDI
Sbjct:     1 MKIWCAVCDKEEASVFCCADEAALCNGCDRHVHFANKLAGKHLRFSLTSPTFKDAPLCDI 60

Query:    60 CQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEP-ADPGAXXXXX 118
             C E     FC +DRA+LCR+CD+ IH AN +   H RFLLTGVK++  P A P A     
Sbjct:    61 CGERRALLFCQEDRAILCRECDIPIHQANEHTKKHNRFLLTGVKISASPSAYPRASNSNS 120

Query:   119 XXXXGENILDTKSHSLSRRDALMPVAAECKEVLPASSGGVG-----GFAMN--KVSFAG- 170
                 G     T+  S+S     +P +A   EV  +SS         G   N   VS +G 
Sbjct:   121 AAAFGR--AKTRPKSVSSE---VPSSAS-NEVFTSSSSTTTSNCYYGIEENYHHVSDSGS 174

Query:   171 GSAA-GST--------PSWHMDDFLALPELNQNYSFMDN 200
             GS   GS         P W ++D L  P      S+ DN
Sbjct:   175 GSGCTGSISEYLMETLPGWRVEDLLEHPSC---VSYEDN 210

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010200 "response to chitin" evidence=IEP

GO:0080167 "response to karrikin" evidence=IEP

GO:0009741 "response to brassinosteroid stimulus" evidence=IEP

TAIR|locus:2050130 BBX18 "B-box domain protein 18" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 53/110 (48%), Positives = 67/110 (60%)

Query:     1 MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDIC 60
             MRI C+ CE+A A V C ADEAALC  CD+KVH  NKLAS+H RV L+  S   P CDIC
Sbjct:     1 MRILCDACESAAAIVFCAADEAALCCSCDEKVHKCNKLASRHLRVGLADPSNA-PSCDIC 59

Query:    61 QETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPAD 110
             +    FF+C  D + LC +CD+ +H        H+RFLL   ++   P D
Sbjct:    60 ENAPAFFYCEIDGSSLCLQCDMVVHVGGK--RTHRRFLLLRQRIEF-PGD 106

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:2047246 COL3 "CONSTANS-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 42/105 (40%), Positives = 58/105 (55%)

Query:     5 CNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETS 64
             C+ C++  A + C AD A LC +CD K+H ANKLAS+H+RV L         C++C++  
Sbjct:     8 CDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWL---------CEVCEQAP 58

Query:    65 GFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPA 109
                 C  D A LC  CD  IH+AN     H+R  +T    A+ PA
Sbjct:    59 AHVTCKADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPA 103

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0010099 "regulation of photomorphogenesis" evidence=IMP

GO:0010161 "red light signaling pathway" evidence=IMP

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

TAIR|locus:2143221 COL1 "CONSTANS-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 7.0e-16, P = 7.0e-16
 Identities = 41/92 (44%), Positives = 50/92 (54%)

Query:     5 CNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETS 64
             C+ C +A   V C AD A LC  CD +VHAAN+LAS+H+RV +         C  C+   
Sbjct:    12 CDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRV---------CQSCERAP 62

Query:    65 GFFFCLQDRALLCRKCDVAIHTANSYVSAHQR 96
               FFC  D A LC  CD  IH+AN     HQR
Sbjct:    63 AAFFCKADAASLCTTCDSEIHSANPLARRHQR 94

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007623 "circadian rhythm" evidence=IMP

GO:0009909 "regulation of flower development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0006281 "DNA repair" evidence=RCA

GO:0010100 "negative regulation of photomorphogenesis" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

UNIPROTKB|Q9FRZ7 Hd1 "Hd1 protein" [Oryza sativa Indica Group (taxid:39946)]

 Score = 195 (73.7 bits), Expect = 3.7e-15, P = 3.7e-15
 Identities = 41/105 (39%), Positives = 56/105 (53%)

Query:     5 CNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETS 64
             C+ C AA + V C AD A LC  CD +VHAAN++AS+H+RV +         C+ C++  
Sbjct:    35 CDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRV---------CEACEQAP 85

Query:    65 GFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVALEPA 109
                 C  D A LC  CDV +H+AN     HQR  +  +     PA
Sbjct:    86 AALACRADAAALCVACDVQVHSANPLARRHQRVPVAPLPAITIPA 130

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0010229 "inflorescence development" evidence=IGI

GO:0048571 "long-day photoperiodism" evidence=IEP

GO:0048572 "short-day photoperiodism" evidence=IEP

TAIR|locus:2074587 COL2 "CONSTANS-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 3.9e-15, P = 3.9e-15
 Identities = 39/92 (42%), Positives = 49/92 (53%)

Query:     5 CNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETS 64
             C+ C +A   V C AD A LC  CD +VHAAN++AS+H+RV +         C  C+   
Sbjct:    16 CDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRV---------CQSCESAP 66

Query:    65 GFFFCLQDRALLCRKCDVAIHTANSYVSAHQR 96
               F C  D A LC  CD  IH+AN     HQR
Sbjct:    67 AAFLCKADAASLCTACDAEIHSANPLARRHQR 98

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009909 "regulation of flower development" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SYM2	STHY_ARATH	No assigned EC number	0.5397	0.9756	0.9397	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XI.3429.1 hypothetical protein (274 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	288
smart00336	42	smart00336, BBOX, B-Box-type zinc finger	1e-08
smart00336	42	smart00336, BBOX, B-Box-type zinc finger	1e-07
cd00021	39	cd00021, BBOX, B-Box-type zinc finger; zinc bindin	2e-07
cd00021	39	cd00021, BBOX, B-Box-type zinc finger; zinc bindin	2e-07
pfam00643	42	pfam00643, zf-B_box, B-box zinc finger	1e-04

>gnl|CDD|197662 smart00336, BBOX, B-Box-type zinc finger

 Score = 50.0 bits (120), Expect = 1e-08
 Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 6/47 (12%)

Query: 53 QMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLL 99
          + PKCD   +    FFC +  ALLCR CD A H        H   LL
Sbjct: 2  RAPKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL 42

Length = 42

>gnl|CDD|197662 smart00336, BBOX, B-Box-type zinc finger

 Score = 46.9 bits (112), Expect = 1e-07
 Identities = 12/43 (27%), Positives = 15/43 (34%), Gaps = 6/43 (13%)

Query: 5  CNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPL 47
          C+      A+  C    A LC  CD+  H        H  V L
Sbjct: 6  CDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL 42

Length = 42

>gnl|CDD|237988 cd00021, BBOX, B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

 Score = 46.5 bits (111), Expect = 2e-07
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 6/45 (13%)

Query: 55 PKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLL 99
            CD   E     FC  DRALLC  CD+++H      S H+R  L
Sbjct: 1  RLCDEHGEEPLSLFCETDRALLCVDCDLSVH------SGHRRVPL 39

Length = 39

>gnl|CDD|237988 cd00021, BBOX, B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

 Score = 46.1 bits (110), Expect = 2e-07
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 6/45 (13%)

Query: 3  IQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPL 47
            C+        + C  D A LC +CD  VH      S H+RVPL
Sbjct: 1  RLCDEHGEEPLSLFCETDRALLCVDCDLSVH------SGHRRVPL 39

Length = 39

>gnl|CDD|216039 pfam00643, zf-B_box, B-box zinc finger

 Score = 38.6 bits (90), Expect = 1e-04
 Identities = 9/41 (21%), Positives = 19/41 (46%)

Query: 52 TQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVS 92
          ++   C   +E     +C   + LLC +C ++ H  ++ V 
Sbjct: 1  SKERLCPEHEEKPLELYCEDCQQLLCEECALSGHKGHTVVP 41

Length = 42

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	288
KOG4367	699	consensus Predicted Zn-finger protein [Function un	97.8
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	97.76
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	97.72
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	97.55
smart00336	42	BBOX B-Box-type zinc finger.	97.26
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	97.2
smart00336	42	BBOX B-Box-type zinc finger.	97.0

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=97.80  E-value=6.1e-06  Score=82.41  Aligned_cols=82  Identities=26%  Similarity=0.538  Sum_probs=71.6

Q ss_pred             ccCccCCCC--CceEEecCCccccchhhhHhhhhccccccccccccCCC-------CCCCCCCCCcccCcceEEEccccc
Q 023008            3 IQCNVCEAA--EAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSS-------SSTQMPKCDICQETSGFFFCLQDR   73 (288)
Q Consensus         3 ~~Cd~Ce~a--~A~vyC~AD~A~LC~~CD~~VHsANkLa~rH~RvpL~~-------a~~~~p~CdiC~s~~A~ffC~~D~   73 (288)
                      ..|..|+++  .|.|+|..|..++|.-|..+.|-+-..+.||..+|-.+       .+.....|..|+-+.-..||.+|.
T Consensus       163 ~kcqlce~a~k~a~v~ceqcdv~yc~pc~~~~hp~rgplakh~l~~~~~grvs~~~s~r~~~~ct~h~~e~~smyc~~ck  242 (699)
T KOG4367|consen  163 LKCQLCEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMYCVQCK  242 (699)
T ss_pred             hhhhhhcCChhhhhhhHhhCceEEechHHhccCCCCCchhhcccCCcccCceeeccchhhhhhccCCCCCCceEEEEecC
Confidence            369999865  59999999999999999999999888889999887655       245667799999999999999999


Q ss_pred             ccccccccccc
Q 023008           74 ALLCRKCDVAI   84 (288)
Q Consensus        74 a~LC~~CDv~i   84 (288)
                      +++|..|....
T Consensus       243 ~pvc~~clee~  253 (699)
T KOG4367|consen  243 MPVCYQCLEEG  253 (699)
T ss_pred             ChHHHHHHHhh
Confidence            99999999864

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=97.76  E-value=2e-05  Score=52.03  Aligned_cols=38  Identities=45%  Similarity=0.855  Sum_probs=34.3

Q ss_pred             CCCcccCcceEEEcccccccccccccccccCCCCCCCCCceeee
Q 023008           56 KCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLL   99 (288)
Q Consensus        56 ~CdiC~s~~A~ffC~~D~a~LC~~CDv~iHsaN~l~s~H~RvpL   99 (288)
                      .|+.|+.+++.+||.+|...||..|+...|+      .|.+++|
T Consensus         2 ~C~~H~~~~~~~fC~~~~~~iC~~C~~~~H~------~H~~~~i   39 (39)
T cd00021           2 LCDEHGEEPLSLFCETDRALLCVDCDLSVHS------GHRRVPL   39 (39)
T ss_pred             CCCccCCcceEEEeCccChhhhhhcChhhcC------CCCEeeC
Confidence            5999998899999999999999999988775      8998875

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.72  E-value=2.4e-05  Score=53.03  Aligned_cols=40  Identities=30%  Similarity=0.549  Sum_probs=34.9

Q ss_pred             CCCCCcccCcceEEEcccccccccccccccccCCCCCCCCCceeee
Q 023008           54 MPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLL   99 (288)
Q Consensus        54 ~p~CdiC~s~~A~ffC~~D~a~LC~~CDv~iHsaN~l~s~H~RvpL   99 (288)
                      ...|+.|++..+.+||..|+.+||..|....|+.      |..++|
T Consensus         3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~------H~~~~i   42 (42)
T PF00643_consen    3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG------HKIVPI   42 (42)
T ss_dssp             SSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT------SEEEEC
T ss_pred             CccCccCCccceEEEecCCCCccCccCCCCCCCC------CEEeEC
Confidence            4679999998899999999999999999998863      888876

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=97.55  E-value=5.6e-05  Score=49.82  Aligned_cols=39  Identities=38%  Similarity=0.750  Sum_probs=33.7

Q ss_pred             ccCccCCCCCceEEecCCccccchhhhHhhhhccccccccccccC
Q 023008            3 IQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPL   47 (288)
Q Consensus         3 ~~Cd~Ce~a~A~vyC~AD~A~LC~~CD~~VHsANkLa~rH~RvpL   47 (288)
                      ..|+.++.+++.+||..|.+.+|..|+...|.      .|.+++|
T Consensus         1 ~~C~~H~~~~~~~fC~~~~~~iC~~C~~~~H~------~H~~~~i   39 (39)
T cd00021           1 RLCDEHGEEPLSLFCETDRALLCVDCDLSVHS------GHRRVPL   39 (39)
T ss_pred             CCCCccCCcceEEEeCccChhhhhhcChhhcC------CCCEeeC
Confidence            36889988899999999999999999977764      7888775

>smart00336 BBOX B-Box-type zinc finger

Probab=97.26  E-value=0.00026  Score=47.26  Aligned_cols=39  Identities=49%  Similarity=0.870  Sum_probs=34.0

Q ss_pred             CCCCcccCcceEEEcccccccccccccccccCCCCCCCCCceeee
Q 023008           55 PKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLL   99 (288)
Q Consensus        55 p~CdiC~s~~A~ffC~~D~a~LC~~CDv~iHsaN~l~s~H~RvpL   99 (288)
                      ..|..|+.+++.+||..|...||..|....|      +.|.+++|
T Consensus         4 ~~C~~h~~~~~~~~C~~c~~~iC~~C~~~~H------~~H~~~~l   42 (42)
T smart00336        4 PKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL   42 (42)
T ss_pred             CcCCCCCCCceEEECCCCCcccccccChhhc------CCCceecC
Confidence            4599999899999999999999999998867      47888765

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.20  E-value=0.00032  Score=47.43  Aligned_cols=40  Identities=25%  Similarity=0.507  Sum_probs=33.9

Q ss_pred             CccCccCCCCCceEEecCCccccchhhhHhhhhccccccccccccC
Q 023008            2 RIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPL   47 (288)
Q Consensus         2 k~~Cd~Ce~a~A~vyC~AD~A~LC~~CD~~VHsANkLa~rH~RvpL   47 (288)
                      ...|+.|....+.+||..|...||..|....|..      |..++|
T Consensus         3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~------H~~~~i   42 (42)
T PF00643_consen    3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG------HKIVPI   42 (42)
T ss_dssp             SSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT------SEEEEC
T ss_pred             CccCccCCccceEEEecCCCCccCccCCCCCCCC------CEEeEC
Confidence            3579999998899999999999999999888864      887765

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>smart00336 BBOX B-Box-type zinc finger

Probab=97.00  E-value=0.00054  Score=45.69  Aligned_cols=39  Identities=31%  Similarity=0.550  Sum_probs=33.0

Q ss_pred             ccCccCCCCCceEEecCCccccchhhhHhhhhccccccccccccC
Q 023008            3 IQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPL   47 (288)
Q Consensus         3 ~~Cd~Ce~a~A~vyC~AD~A~LC~~CD~~VHsANkLa~rH~RvpL   47 (288)
                      ..|..++..++.+||..|.+.+|..|....|      +.|.+++|
T Consensus         4 ~~C~~h~~~~~~~~C~~c~~~iC~~C~~~~H------~~H~~~~l   42 (42)
T smart00336        4 PKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL   42 (42)
T ss_pred             CcCCCCCCCceEEECCCCCcccccccChhhc------CCCceecC
Confidence            5788998889999999999999999987655      56777664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	288
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	1e-05

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens} Length = 101

 Score = 42.6 bits (100), Expect = 1e-05
 Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 8/88 (9%)

Query: 2  RIQCNVCE---AAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCD 58
          ++ C  C+   A +A   C   E + C EC    H   K  + H+ +     S       
Sbjct: 3  KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGL-- 60

Query: 59 ICQETSG---FFFCLQDRALLCRKCDVA 83
          +C E        +C+ D  L+C  C + 
Sbjct: 61 MCLEHEDEKVNMYCVTDDQLICALCKLV 88

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	288
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	99.27
2dja_A	84	Midline-2; tripartite motif protein 1, ZF-B_BOX, s	96.71
2yvr_A	50	Transcription intermediary factor 1-beta; ZF-B_BOX	96.25
2did_A	53	Tripartite motif protein 39; ZF-B-box domian, Zn b	96.17
3ddt_A	48	E3 ubiquitin-protein ligase TRIM63; zinc-binding m	95.94
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	95.92
2d8u_A	64	Ubiquitin ligase TRIM63; tripartite motif-containi	95.91
2ffw_A	78	Midline-1; B-BOX, ring finger, zinc-finger, ligase	95.8
2csv_A	72	Tripartite motif protein 29; ZF-B_BOX domain, TRIM	95.61
2yrg_A	59	Tripartite motif-containing protein 5; B-box domai	95.13
1fre_A	42	Nuclear factor XNF7; zinc-binding protein, BBOX, d	95.11
2egm_A	57	Tripartite motif-containing protein 41; ZF-B_BOX d	93.47
2ffw_A	78	Midline-1; B-BOX, ring finger, zinc-finger, ligase	88.05
2d8v_A	67	Zinc finger FYVE domain-containing protein 19; zfy	82.42
2did_A	53	Tripartite motif protein 39; ZF-B-box domian, Zn b	81.15

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=99.27  E-value=5e-12  Score=98.63  Aligned_cols=93  Identities=25%  Similarity=0.540  Sum_probs=77.8

Q ss_pred             CccCccCCC---CCceEEecCCccccchhhhHhhhhccccccccccc-cCCCCCCCCCCCCcccCcceEEEccccccccc
Q 023008            2 RIQCNVCEA---AEAKVLCCADEAALCWECDDKVHAANKLASKHQRV-PLSSSSTQMPKCDICQETSGFFFCLQDRALLC   77 (288)
Q Consensus         2 k~~Cd~Ce~---a~A~vyC~AD~A~LC~~CD~~VHsANkLa~rH~Rv-pL~~a~~~~p~CdiC~s~~A~ffC~~D~a~LC   77 (288)
                      ++.|++|..   .+|+.+|..|.+.||..|...+|..++.+.+|.++ ++.+.......|+.|+..+..+||..|..++|
T Consensus         3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~~~~~~~C~~H~~e~l~~fC~~~~~~iC   82 (101)
T 2jun_A            3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVTDDQLIC   82 (101)
T ss_dssp             CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSCCSSCCCCSSCSSSCCCEEETTTTEEEC
T ss_pred             CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccccCccCCcCcCcCCCcceEECCCCCCccc
Confidence            468999983   68999999999999999998899988888999987 55433445668999998999999999999999


Q ss_pred             ccccc-cccCCCCCCCCCceeeee
Q 023008           78 RKCDV-AIHTANSYVSAHQRFLLT  100 (288)
Q Consensus        78 ~~CDv-~iHsaN~l~s~H~RvpL~  100 (288)
                      ..|.. ..|.      .|.-++|.
T Consensus        83 ~~C~~~~~H~------~H~~~~l~  100 (101)
T 2jun_A           83 ALCKLVGRHR------DHQVAALS  100 (101)
T ss_dssp             HHHHHHTTTS------SSCBCCCC
T ss_pred             hhcCCCCCcC------CCCeecCC
Confidence            99997 5775      57666654

>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A

Probab=96.71  E-value=0.001  Score=49.93  Aligned_cols=60  Identities=20%  Similarity=0.287  Sum_probs=46.0

Q ss_pred             ccccccccCCCC-CCCCCCCCcccCcceEEEcccccccccccccc-cccCCCCCCCCCceeeeeCccc
Q 023008           39 ASKHQRVPLSSS-STQMPKCDICQETSGFFFCLQDRALLCRKCDV-AIHTANSYVSAHQRFLLTGVKV  104 (288)
Q Consensus        39 a~rH~RvpL~~a-~~~~p~CdiC~s~~A~ffC~~D~a~LC~~CDv-~iHsaN~l~s~H~RvpL~g~~~  104 (288)
                      +.+|+.+..... ......|..|+..+..+||..|...+|..|.. .-|.      .|.-++|..+.-
T Consensus         2 ~~~H~l~~p~~~~~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ea~~   63 (84)
T 2dja_A            2 SSGSSGVEPVPDTHLRGITCLDHENEKVNMYCVSDDQLICALCKLVGRHR------DHQVASLNDRFE   63 (84)
T ss_dssp             CCCCCCCCCCCCCCSSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTTT------TCCBCCCCSSCC
T ss_pred             CCCCcccCCCCCCCCCCCcCcCcCCccccEEcCCCCceEcccCcCCCCCC------CCCccCHHHHHH
Confidence            467887775431 33456799998889999999999999999998 5674      687777776544

>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}

Probab=96.25  E-value=0.002  Score=44.01  Aligned_cols=42  Identities=26%  Similarity=0.581  Sum_probs=35.4

Q ss_pred             CCCCcccCcceEEEcccccccccccccccccCCCCCCCCCceeeeeCc
Q 023008           55 PKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGV  102 (288)
Q Consensus        55 p~CdiC~s~~A~ffC~~D~a~LC~~CDv~iHsaN~l~s~H~RvpL~g~  102 (288)
                      ..|..|+.+...+||..|..++|..|....|.      .|..++|..+
T Consensus         7 ~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H~------~H~~~~l~ea   48 (50)
T 2yvr_A            7 VYCNVHKHEPLVLFCESCDTLTCRDCQLNAHK------DHQYQFLEDA   48 (50)
T ss_dssp             CBCSSSTTCBCCEEETTTTEEECHHHHHTTTT------TCCEEETTC-
T ss_pred             CcCcCCCCCCEEEEeCCCCEEEecccCCCcCC------CCceecHHHH
Confidence            45999988899999999999999999987664      7888887654

>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A

Probab=96.17  E-value=0.0036  Score=43.31  Aligned_cols=43  Identities=26%  Similarity=0.531  Sum_probs=36.0

Q ss_pred             CCCCCcccCcceEEEcccccccccccccc-cccCCCCCCCCCceeeeeCcc
Q 023008           54 MPKCDICQETSGFFFCLQDRALLCRKCDV-AIHTANSYVSAHQRFLLTGVK  103 (288)
Q Consensus        54 ~p~CdiC~s~~A~ffC~~D~a~LC~~CDv-~iHsaN~l~s~H~RvpL~g~~  103 (288)
                      ...|..|+ +...+||..|...+|..|.. .-|.      .|..+||..+.
T Consensus         8 ~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ea~   51 (53)
T 2did_A            8 ESLCPQHH-EALSLFCYEDQEAVCLICAISHTHR------AHTVVPLSGPS   51 (53)
T ss_dssp             CCBCTTTC-CBCCEEESSSCSEECHHHHTSSTTT------TSCEEECCCTT
T ss_pred             CCcChhhC-CeeeEEeCCCCeEEeccccCCCCCC------CCcEeeHHHHh
Confidence            44699997 78999999999999999997 5674      78888887654

>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A

Probab=95.94  E-value=0.0045  Score=42.04  Aligned_cols=42  Identities=26%  Similarity=0.487  Sum_probs=34.2

Q ss_pred             CCCCCCcccCcceEEEcccccccccccccc-cccCCCCCCCCCceeeee
Q 023008           53 QMPKCDICQETSGFFFCLQDRALLCRKCDV-AIHTANSYVSAHQRFLLT  100 (288)
Q Consensus        53 ~~p~CdiC~s~~A~ffC~~D~a~LC~~CDv-~iHsaN~l~s~H~RvpL~  100 (288)
                      ....|..|+.++..+||..|..++|..|.. ..|.      .|.-+||.
T Consensus         5 ~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~   47 (48)
T 3ddt_A            5 SHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQ   47 (48)
T ss_dssp             TSCBCSSSTTSBCCEEETTTTEEECHHHHHHSTTT------TSCEEECC
T ss_pred             cCCcCCCCCCccccEEcCCCCeeEcccccCCCcCC------CCcEEeCC
Confidence            455699998788999999999999999984 4675      57777764

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=95.92  E-value=0.0043  Score=47.63  Aligned_cols=43  Identities=19%  Similarity=0.464  Sum_probs=37.7

Q ss_pred             CCCCcccC---cceEEEcccccccccccccccccCCCCCCCCCcee
Q 023008           55 PKCDICQE---TSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRF   97 (288)
Q Consensus        55 p~CdiC~s---~~A~ffC~~D~a~LC~~CDv~iHsaN~l~s~H~Rv   97 (288)
                      ..|++|..   .++..+|..|...+|..|...+|..+..+.+|+++
T Consensus         4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~   49 (101)
T 2jun_A            4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI   49 (101)
T ss_dssp             CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBS
T ss_pred             CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeee
Confidence            45999984   58899999999999999999999988777888876

>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=95.91  E-value=0.0031  Score=44.95  Aligned_cols=45  Identities=27%  Similarity=0.425  Sum_probs=37.0

Q ss_pred             CCCCCcccCcceEEEccccccccccccccc-ccCCCCCCCCCceeeeeCccc
Q 023008           54 MPKCDICQETSGFFFCLQDRALLCRKCDVA-IHTANSYVSAHQRFLLTGVKV  104 (288)
Q Consensus        54 ~p~CdiC~s~~A~ffC~~D~a~LC~~CDv~-iHsaN~l~s~H~RvpL~g~~~  104 (288)
                      ...|..|+.++..+||..|..++|..|... .|.      .|..+||..+.-
T Consensus         8 ~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~~a~~   53 (64)
T 2d8u_A            8 HPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQSVFQ   53 (64)
T ss_dssp             CCCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTTTCCS
T ss_pred             CCcCcCcCCCccceEcCcCCceeCccccCCCcCC------CCCeeCHHHHHH
Confidence            445999988889999999999999999864 675      688888776543

>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}

Probab=95.80  E-value=0.0065  Score=45.85  Aligned_cols=44  Identities=25%  Similarity=0.577  Sum_probs=36.8

Q ss_pred             CccCccCCC---CCceEEecCCccccchhhhHhhhhccccccccccc
Q 023008            2 RIQCNVCEA---AEAKVLCCADEAALCWECDDKVHAANKLASKHQRV   45 (288)
Q Consensus         2 k~~Cd~Ce~---a~A~vyC~AD~A~LC~~CD~~VHsANkLa~rH~Rv   45 (288)
                      .+.|++|..   .+|+..|..|.+.||..|-...|...+.+.+|.-+
T Consensus        30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L~   76 (78)
T 2ffw_A           30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI   76 (78)
T ss_dssp             CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCCS
T ss_pred             CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCccc
Confidence            368999974   68999999999999999954469877778888765

>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=95.61  E-value=0.0058  Score=44.79  Aligned_cols=58  Identities=21%  Similarity=0.355  Sum_probs=43.6

Q ss_pred             ccccccccCCCCCCCCCCCCcccCcceEEEcccccccccccccccccCCCCCCCCCceeeeeCccc
Q 023008           39 ASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKV  104 (288)
Q Consensus        39 a~rH~RvpL~~a~~~~p~CdiC~s~~A~ffC~~D~a~LC~~CDv~iHsaN~l~s~H~RvpL~g~~~  104 (288)
                      +.+|+-+.-. .......|..|+ ++..+||..|...+|..|...-|.      .|.-++|..+.-
T Consensus         4 ~~~H~L~~p~-~~~~~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H~------~H~~~~l~ea~~   61 (72)
T 2csv_A            4 GSSGQLLEPI-RDFEARKCPVHG-KTMELFCQTDQTCICYLCMFQEHK------NHSTVTVEEAKA   61 (72)
T ss_dssp             SCCCCCCCCS-SSSSCCBCTTTC-CBCCEEESSSCCEECHHHHHTTTS------SSCEEEHHHHHH
T ss_pred             ccCCcccCCc-cccccCcCcccC-CceEEEeCCCCeEEccccCCCCCC------CCCEecHHHHHH
Confidence            4677766532 223456799995 889999999999999999886664      788888876543

>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.13  E-value=0.012  Score=41.87  Aligned_cols=42  Identities=24%  Similarity=0.578  Sum_probs=35.1

Q ss_pred             CCCCcccCcceEEEcccccccccccccc-cccCCCCCCCCCceeeeeCcc
Q 023008           55 PKCDICQETSGFFFCLQDRALLCRKCDV-AIHTANSYVSAHQRFLLTGVK  103 (288)
Q Consensus        55 p~CdiC~s~~A~ffC~~D~a~LC~~CDv-~iHsaN~l~s~H~RvpL~g~~  103 (288)
                      ..|..|+ ++..+||..|...||..|.. .-|.      .|..+||..+.
T Consensus        15 ~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH~------~H~~~~l~ea~   57 (59)
T 2yrg_A           15 DHCARHG-EKLLLFCQEDGKVICWLCERSQEHR------GHHTFPTSGPS   57 (59)
T ss_dssp             SBCTTTC-CBCCEEETTTCSEECHHHHTSTTTT------TCCEEECCSSC
T ss_pred             ccChhhC-ceeeeecCCCCcEEecccCCCCcCC------CCcEeeHHHHh
Confidence            4699997 67889999999999999998 4564      78888887654

>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1

Probab=95.11  E-value=0.0081  Score=39.44  Aligned_cols=31  Identities=26%  Similarity=0.498  Sum_probs=26.6

Q ss_pred             CCCCcccCcceEEEcccccccccccccc-cccC
Q 023008           55 PKCDICQETSGFFFCLQDRALLCRKCDV-AIHT   86 (288)
Q Consensus        55 p~CdiC~s~~A~ffC~~D~a~LC~~CDv-~iHs   86 (288)
                      ..|..|+ +...+||..|...+|..|.. .-|.
T Consensus         4 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~   35 (42)
T 1fre_A            4 EKCSEHD-ERLKLYCKDDGTLSCVICRDSLKHA   35 (42)
T ss_dssp             CCCCSSC-SSCCCCCCSSSSSSCCTTSSCSSCT
T ss_pred             ccchhhC-CeeeEEeCCCCeEEeccCCCCCCCC
Confidence            4599997 77899999999999999998 4564

>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.47  E-value=0.028  Score=39.73  Aligned_cols=33  Identities=24%  Similarity=0.438  Sum_probs=27.7

Q ss_pred             CCCCCCcccCcceEEEcccccccccccccc-cccC
Q 023008           53 QMPKCDICQETSGFFFCLQDRALLCRKCDV-AIHT   86 (288)
Q Consensus        53 ~~p~CdiC~s~~A~ffC~~D~a~LC~~CDv-~iHs   86 (288)
                      ....|..|+ +...+||..|...||..|.. .-|.
T Consensus        17 ~~~~C~~H~-e~L~lfC~~d~~~iC~~C~~~~eH~   50 (57)
T 2egm_A           17 DQGICPKHQ-EALKLFCEVDEEAICVVCRESRSHK   50 (57)
T ss_dssp             TTSBCTTTC-CBCCEEETTTTEEECHHHHHSHHHH
T ss_pred             ccCcChhhC-ceeeEEcCCCCcEEecccCCCCCCC
Confidence            345699995 78999999999999999997 4564

>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}

Probab=88.05  E-value=0.2  Score=37.49  Aligned_cols=45  Identities=18%  Similarity=0.445  Sum_probs=37.1

Q ss_pred             CCCCCCcccC---cceEEEcccccccccccccccccCCCCCCCCCcee
Q 023008           53 QMPKCDICQE---TSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRF   97 (288)
Q Consensus        53 ~~p~CdiC~s---~~A~ffC~~D~a~LC~~CDv~iHsaN~l~s~H~Rv   97 (288)
                      ....|++|..   .+|.-.|+.|.+.+|..|....|.......+|+-+
T Consensus        29 ~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L~   76 (78)
T 2ffw_A           29 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI   76 (78)
T ss_dssp             CCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCCS
T ss_pred             CCccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCccc
Confidence            3567999975   67899999999999999999889877667777643

>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1

Probab=82.42  E-value=1.5  Score=32.69  Aligned_cols=48  Identities=27%  Similarity=0.415  Sum_probs=39.8

Q ss_pred             CCCCCCcccCcceEEEcccc-cccccccccccccCCCCCCCCCceeeeeCc
Q 023008           53 QMPKCDICQETSGFFFCLQD-RALLCRKCDVAIHTANSYVSAHQRFLLTGV  102 (288)
Q Consensus        53 ~~p~CdiC~s~~A~ffC~~D-~a~LC~~CDv~iHsaN~l~s~H~RvpL~g~  102 (288)
                      ..+-|-||.+. |.+.|..| .-+.|..|-...|. +...+.|+-++....
T Consensus         7 e~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~H~-~~d~r~Hk~v~y~~~   55 (67)
T 2d8v_A            7 GLPWCCICNED-ATLRCAGCDGDLYCARCFREGHD-NFDLKEHQTSPYHPR   55 (67)
T ss_dssp             CCSSCTTTCSC-CCEEETTTTSEEECSSHHHHHTT-TSSTTTCCEECCCCS
T ss_pred             CCCeeEEeCCC-CeEEecCCCCceehHHHHHHHcc-chhhhccceeeccCC
Confidence            46779999866 99999988 77999999999996 456789999987544

>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A

Probab=81.15  E-value=1.4  Score=29.88  Aligned_cols=40  Identities=30%  Similarity=0.620  Sum_probs=29.7

Q ss_pred             cCccCCCCCceEEecCCccccchhhhH-hhhhccccccccccccCCCC
Q 023008            4 QCNVCEAAEAKVLCCADEAALCWECDD-KVHAANKLASKHQRVPLSSS   50 (288)
Q Consensus         4 ~Cd~Ce~a~A~vyC~AD~A~LC~~CD~-~VHsANkLa~rH~RvpL~~a   50 (288)
                      .|..=. ..-.+||..|...+|..|.. .-|      +.|..++|.++
T Consensus        10 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ea   50 (53)
T 2did_A           10 LCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAHTVVPLSGP   50 (53)
T ss_dssp             BCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTSCEEECCCT
T ss_pred             cChhhC-CeeeEEeCCCCeEEeccccCCCCC------CCCcEeeHHHH
Confidence            454444 67889999999999999964 344      46778888654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	288
d2djaa1	71	Midline-2 {Human (Homo sapiens) [TaxId: 9606]}	96.58
d2d8ua1	51	Ubiquitin ligase trim63 {Human (Homo sapiens) [Tax	96.35
d2dq5a1	47	Midline-1 {Human (Homo sapiens) [TaxId: 9606]}	95.98
d2dida1	40	Tripartite motif-containing protein 39 {Human (Hom	95.47
d2csva1	59	Tripartite motif-containing protein 29 {Human (Hom	95.29
d1frea_	39	Nuclear factor XNF7 {African clawed frog (Xenopus	95.06
d2fc7a1	69	Zinc finger ZZ-type-containing protein 3, ZZZ3 {Hu	86.51
d2djaa1	71	Midline-2 {Human (Homo sapiens) [TaxId: 9606]}	80.5

>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.00057  Score=48.54  Aligned_cols=44  Identities=23%  Similarity=0.389  Sum_probs=36.1

Q ss_pred             CCCCCcccCcceEEEccccccccccccccc-ccCCCCCCCCCceeeeeCcc
Q 023008           54 MPKCDICQETSGFFFCLQDRALLCRKCDVA-IHTANSYVSAHQRFLLTGVK  103 (288)
Q Consensus        54 ~p~CdiC~s~~A~ffC~~D~a~LC~~CDv~-iHsaN~l~s~H~RvpL~g~~  103 (288)
                      ...|..|.+....|||..|..++|..|... .|.      .|.-.+|..+.
T Consensus        11 ~~~C~~H~~e~l~~fC~~C~~~iC~~C~~~~~Hk------~H~~~~i~~a~   55 (71)
T d2djaa1          11 GITCLDHENEKVNMYCVSDDQLICALCKLVGRHR------DHQVASLNDRF   55 (71)
T ss_dssp             CCCCSSCSSSCCCEEETTTTEEECHHHHHTSTTT------TCCBCCCCSSC
T ss_pred             CCcCcccCCccceeEcCCCCceeccccccCCCCC------CCcCcCHHHHH
Confidence            445999999999999999999999999764 564      68777776554

>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Ubiquitin ligase trim63
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.00055  Score=46.32  Aligned_cols=43  Identities=28%  Similarity=0.488  Sum_probs=35.5

Q ss_pred             CCCCcccCcceEEEcccccccccccccc-cccCCCCCCCCCceeeeeCcc
Q 023008           55 PKCDICQETSGFFFCLQDRALLCRKCDV-AIHTANSYVSAHQRFLLTGVK  103 (288)
Q Consensus        55 p~CdiC~s~~A~ffC~~D~a~LC~~CDv-~iHsaN~l~s~H~RvpL~g~~  103 (288)
                      |.|+.|.+++..|||..|+.++|..|.+ ..|+      .|.-.+|..+.
T Consensus         2 p~C~~H~~e~l~~yC~~c~~~iC~~C~~~~~Hk------~H~v~~l~~a~   45 (51)
T d2d8ua1           2 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQSVF   45 (51)
T ss_dssp             CCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTTTCC
T ss_pred             CCCcccCcCcceEEcCCCCceECccccCcCCcC------cCcCcCHHHHH
Confidence            4599999999999999999999999976 4674      58777776554

>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.0015  Score=43.52  Aligned_cols=40  Identities=25%  Similarity=0.532  Sum_probs=32.7

Q ss_pred             CCCCcccCcceEEEcccccccccccccc-cccCCCCCCCCCceeeee
Q 023008           55 PKCDICQETSGFFFCLQDRALLCRKCDV-AIHTANSYVSAHQRFLLT  100 (288)
Q Consensus        55 p~CdiC~s~~A~ffC~~D~a~LC~~CDv-~iHsaN~l~s~H~RvpL~  100 (288)
                      ..|..|..+...+||..|..++|..|.+ ..|+      .|.-.+|.
T Consensus         6 ~~C~~H~~e~l~~yC~~C~~~iC~~C~~~~~H~------~H~~~~l~   46 (47)
T d2dq5a1           6 LMCLEHEDEKVNMYCVTDDQLICALCKLVGRHR------DHQVAALS   46 (47)
T ss_dssp             CBCSSCTTSBEEEEETTTTEEEEHHHHHTSSTT------SSCCCCSC
T ss_pred             ccchhhCCCcceEEcCCCCccCCccCcCcCCcC------CCeEeeCC
Confidence            3599999999999999999999999976 4674      56665553

>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 39
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.47  E-value=0.0032  Score=40.61  Aligned_cols=37  Identities=27%  Similarity=0.591  Sum_probs=30.7

Q ss_pred             CCCcccCcceEEEccccccccccccccc-ccCCCCCCCCCceeee
Q 023008           56 KCDICQETSGFFFCLQDRALLCRKCDVA-IHTANSYVSAHQRFLL   99 (288)
Q Consensus        56 ~CdiC~s~~A~ffC~~D~a~LC~~CDv~-iHsaN~l~s~H~RvpL   99 (288)
                      .|..|+ +...+||.+|+.++|..|... .|+      .|.-+||
T Consensus         3 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~------~H~v~pi   40 (40)
T d2dida1           3 LCPQHH-EALSLFCYEDQEAVCLICAISHTHR------AHTVVPL   40 (40)
T ss_dssp             BCTTTC-CBCCEEESSSCSEECHHHHTSSTTT------TSCEEEC
T ss_pred             cchhhC-ccceEEcccCCcEeeccCcCCCCcC------CCcEecC
Confidence            599995 779999999999999999864 674      5777765

>d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 29
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.29  E-value=0.0023  Score=44.24  Aligned_cols=44  Identities=23%  Similarity=0.487  Sum_probs=36.1

Q ss_pred             CCCCCCcccCcceEEEcccccccccccccccccCCCCCCCCCceeeeeCcc
Q 023008           53 QMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVK  103 (288)
Q Consensus        53 ~~p~CdiC~s~~A~ffC~~D~a~LC~~CDv~iHsaN~l~s~H~RvpL~g~~  103 (288)
                      ...+|..|+ .+..|||..|...+|..|....|.      .|.-++|..+.
T Consensus        10 ~~~~C~~H~-e~l~lyC~~c~~~iC~~C~~~~H~------~H~~~~l~~a~   53 (59)
T d2csva1          10 EARKCPVHG-KTMELFCQTDQTCICYLCMFQEHK------NHSTVTVEEAK   53 (59)
T ss_dssp             SCCBCTTTC-CBCCEEESSSCCEECHHHHHTTTS------SSCEEEHHHHH
T ss_pred             hhCchhhhC-CccceECCCCCceECcccCcccCC------CCCeeCHHHHH
Confidence            345799995 689999999999999999877774      68888886553

>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Nuclear factor XNF7
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=95.06  E-value=0.0038  Score=40.07  Aligned_cols=37  Identities=24%  Similarity=0.506  Sum_probs=29.7

Q ss_pred             CCCcccCcceEEEccccccccccccccc-ccCCCCCCCCCceeee
Q 023008           56 KCDICQETSGFFFCLQDRALLCRKCDVA-IHTANSYVSAHQRFLL   99 (288)
Q Consensus        56 ~CdiC~s~~A~ffC~~D~a~LC~~CDv~-iHsaN~l~s~H~RvpL   99 (288)
                      +|..|+ +...+||..|..++|..|... -|+      .|.-+||
T Consensus         2 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~------~H~v~pi   39 (39)
T d1frea_           2 KCSEHD-ERLKLYCKDDGTLSCVICRDSLKHA------SHNFLPI   39 (39)
T ss_dssp             CCCSSC-SSCCCCCCSSSSSSCCTTSSCSSCT------TCCCCCC
T ss_pred             CCcccC-cceeEEcccCCcEeeccCcCCCCcC------CCcEeeC
Confidence            599996 788999999999999999764 564      5665554

>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: Zinc finger ZZ-type-containing protein 3, ZZZ3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.51  E-value=0.46  Score=33.33  Aligned_cols=45  Identities=22%  Similarity=0.399  Sum_probs=32.3

Q ss_pred             CCCcccCcc---eEEEcccc----cccccccccccccCCCCCCCCCceeeee
Q 023008           56 KCDICQETS---GFFFCLQD----RALLCRKCDVAIHTANSYVSAHQRFLLT  100 (288)
Q Consensus        56 ~CdiC~s~~---A~ffC~~D----~a~LC~~CDv~iHsaN~l~s~H~RvpL~  100 (288)
                      .|+.|+..+   ..|.|..|    ..-||..|-...+........|.-.+|-
T Consensus        16 ~Cd~C~~~pi~G~R~~C~~Cp~~~d~DLC~~C~~~~~~~~~H~~~H~~~~I~   67 (69)
T d2fc7a1          16 KCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIY   67 (69)
T ss_dssp             CCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEEC
T ss_pred             EcCCCCCcCcCCcccCCCCCCCCCCccchHHhhcCcccCCCCCCCCCEEEee
Confidence            499998875   35899999    5789999977655443344567766663

>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.50  E-value=0.72  Score=31.61  Aligned_cols=41  Identities=24%  Similarity=0.495  Sum_probs=31.1

Q ss_pred             cCccCCCCCceEEecCCccccchhhhHh-hhhccccccccccccCCCC
Q 023008            4 QCNVCEAAEAKVLCCADEAALCWECDDK-VHAANKLASKHQRVPLSSS   50 (288)
Q Consensus         4 ~Cd~Ce~a~A~vyC~AD~A~LC~~CD~~-VHsANkLa~rH~RvpL~~a   50 (288)
                      .|..=......+||..|...+|..|-.. .|      ..|..++|.++
T Consensus        13 ~C~~H~~e~l~~fC~~C~~~iC~~C~~~~~H------k~H~~~~i~~a   54 (71)
T d2djaa1          13 TCLDHENEKVNMYCVSDDQLICALCKLVGRH------RDHQVASLNDR   54 (71)
T ss_dssp             CCSSCSSSCCCEEETTTTEEECHHHHHTSTT------TTCCBCCCCSS
T ss_pred             cCcccCCccceeEcCCCCceeccccccCCCC------CCCcCcCHHHH
Confidence            4555555678999999999999999543 45      35888888764