Citrus Sinensis ID: 023027

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
MMTRLQPPIPLNLPKTSVQPPSHISASTNDAGLLFRQKILHLQALNVNPQKALHQNPNFRCTPLSSLLSLEHYLLSLGLSRPAVGRILDMHPKLLTADIPRDLEPIIDFLLEEVLIPFNDLPKSLTRCPRILVSDLKTQLRPSFKFLVEFGFKGSHKINCQTTVLLVSSVERTLKPKIDFLKNLGLSDEEVERMVIRSPGLLTFSVENNLVPKVDFFIQEMKGDLDELKKFPQYFSFSLERKIKPRYRILVDHGFKLPLAQMLRVSDGEFNARLIEMRLKLAERSSLL
ccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHcccccccccccHHHHHHHHHHccccHHHHHHHHHHccccccccccccHHHHHHHHHHHcccccccHHHHHHHccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHcccHHHHHHcccccccccccHHHHHHHHHHHcccccccHHHccccHHHHHHHHHHHHHHHHHHHccc
ccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHccccHccccHHHHHHHHHHHHHccccHHHHHHHHHHcccHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHcccEEcccHHHHcHHHHHHHHHcccccccHHHHHcHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHccHHHcccHHHHcHHHHHHHHHHccccHHHHHHccHHHcccHHHHcHHHHHHHHHccccccHHHHHcccHHHHHHHHHHHHHHHccHHHcc
mmtrlqppiplnlpktsvqppshisastndAGLLFRQKILHLQalnvnpqkalhqnpnfrctplssLLSLEHYLLSLglsrpavgrildmhpklltadiprdlEPIIDFLLEEvlipfndlpksltrcpriLVSDLKTQLRPSFKFLVEFgfkgshkincqTTVLLVSSVERTLKPKIDflknlglsdeeVERMVirspglltfsvennlvpkvDFFIQEMKGDldelkkfpqyfSFSLerkikpryriLVDHGFKLPLAQMLRVSDGEFNARLIEMRLKLAERSSLL
mmtrlqppiplnlpktsvqppsHISASTNDAGLLFRQKILHLQALNVNPQKALHQNPNFRCTPLSSLLSLEHYLLSLGLSRPAVGRILDMHPKLLTADIPRDLEPIIDFLLEEVLIPFNDLPKSLTRCPRILVSDLKTQLRPSFKFLVEFGFKGSHKINCQTTVLLVSSVertlkpkidflknlglsdeevERMVIRspglltfsvenNLVPKVDFFIQEMKGDLDELKKFPQYFSFSLERKIKPRYRILVDHGFKLPLAQMLRVSDGEFNARLIEMRLKlaerssll
MMTRLQPPIPLNLPKTSVQPPSHISASTNDAGLLFRQKILHLQALNVNPQKALHQNPNFRCTPlssllslehyllslglsRPAVGRILDMHPKLLTADIPRDLEPIIDFLLEEVLIPFNDLPKSLTRCPRILVSDLKTQLRPSFKFLVEFGFKGSHKINCQTTVLLVSSVERTLKPKIDFLKNLGLSDEEVERMVIRSPGLLTFSVENNLVPKVDFFIQEMKGDLDELKKFPQYFSFSLERKIKPRYRILVDHGFKLPLAQMLRVSDGEFNARLIEMRLKLAERSSLL
******************************AGLLFRQKILHLQALNVNPQKALHQNPNFRCTPLSSLLSLEHYLLSLGLSRPAVGRILDMHPKLLTADIPRDLEPIIDFLLEEVLIPFNDLPKSLTRCPRILVSDLKTQLRPSFKFLVEFGFKGSHKINCQTTVLLVSSVERTLKPKIDFLKNLGLSDEEVERMVIRSPGLLTFSVENNLVPKVDFFIQEMKGDLDELKKFPQYFSFSLERKIKPRYRILVDHGFKLPLAQMLRVSDGEFNARLIEMRL*********
**********************************FRQKILHLQALNVNPQKALHQNPNFRCTPLSSLLSLEHYLLSLGLSRPAVGRILDMHPKLLTADIPRDLEPIIDFLLEEVLIPFNDLPKSLTRCPRILVSDLKTQLRPSFKFLVEFGFKGSHKINCQTTVLLVSSVERTLKPKIDFLKNLGLSDEEVERMVIRSPGLLTFSVENNLVPKVDFFIQEMKGDLDELKKFPQYFSFSLERKIKPRYRILVDHGFKLPLAQMLRVSDGEFNARLIEMRLKLAERSSLL
MMTRLQPPIPLNLPKTSVQPPSHISASTNDAGLLFRQKILHLQALNVNPQKALHQNPNFRCTPLSSLLSLEHYLLSLGLSRPAVGRILDMHPKLLTADIPRDLEPIIDFLLEEVLIPFNDLPKSLTRCPRILVSDLKTQLRPSFKFLVEFGFKGSHKINCQTTVLLVSSVERTLKPKIDFLKNLGLSDEEVERMVIRSPGLLTFSVENNLVPKVDFFIQEMKGDLDELKKFPQYFSFSLERKIKPRYRILVDHGFKLPLAQMLRVSDGEFNARLIEMRLKLAERSSLL
***RLQPPIPLNLPKTSVQPPSHISASTNDAGLLFRQKILHLQALNVNPQKALHQNPNFRCTPLSSLLSLEHYLLSLGLSRPAVGRILDMHPKLLTADIPRDLEPIIDFLLEEVLIPFNDLPKSLTRCPRILVSDLKTQLRPSFKFLVEFGFKGSHKINCQTTVLLVSSVERTLKPKIDFLKNLGLSDEEVERMVIRSPGLLTFSVENNLVPKVDFFIQEMKGDLDELKKFPQYFSFSLERKIKPRYRILVDHGFKLPLAQMLRVSDGEFNARLIEMRLKLAER****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MMTRLQPPIPLNLPKTSVQPPSHISASTNDAGLLFRQKILHLQALNVNPQKALHQNPNFRCTPLSSLLSLEHYLLSLGLSRPAVGRILDMHPKLLTADIPRDLEPIIDFLLEEVLIPFNDLPKSLTRCPRILVSDLKTQLRPSFKFLVEFGFKGSHKINCQTTVLLVSSVERTLKPKIDFLKNLGLSDEEVERMVIRSPGLLTFSVENNLVPKVDFFIQEMKGDLDELKKFPQYFSFSLERKIKPRYRILVDHGFKLPLAQMLRVSDGEFNARLIEMRLKLAERSSLL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query288
225425398331 PREDICTED: uncharacterized protein LOC10 0.940 0.818 0.600 3e-89
53749462318 Putative mTERF domain containing protein 0.913 0.827 0.612 3e-89
56744283318 Putative mTERF domain containing protein 0.913 0.827 0.608 9e-89
147807241388 hypothetical protein VITISV_001739 [Viti 0.940 0.698 0.593 3e-88
224108998293 predicted protein [Populus trichocarpa] 0.989 0.972 0.563 6e-86
255562900290 conserved hypothetical protein [Ricinus 0.885 0.879 0.617 9e-84
449478661278 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.895 0.928 0.624 1e-83
449434776308 PREDICTED: uncharacterized protein LOC10 0.885 0.827 0.631 2e-83
3461829284 predicted by genefinder and genscan [Ara 0.944 0.957 0.562 2e-83
42568893283 transcription termination factor family 0.944 0.961 0.562 2e-83
>gi|225425398|ref|XP_002271162.1| PREDICTED: uncharacterized protein LOC100247222 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  334 bits (856), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 164/273 (60%), Positives = 210/273 (76%), Gaps = 2/273 (0%)

Query: 15  KTSVQPPSHISASTNDAGLLFRQKILHLQALNVNPQKALHQNPNFRCTPLSSLLSLEHYL 74
           + S+ P  H +   +D+GL FRQK+L+++ L VN  KALH+NPNFR  PL ++ S+E  L
Sbjct: 42  RNSLSP--HPNTPISDSGLRFRQKLLYIENLKVNSSKALHKNPNFRSAPLDTVKSVEKCL 99

Query: 75  LSLGLSRPAVGRILDMHPKLLTADIPRDLEPIIDFLLEEVLIPFNDLPKSLTRCPRILVS 134
            S+G+ R A+GRILDMHP+LLT+D   DL P+ DFL  EV IPF D+ KS+ RCPR+L+ 
Sbjct: 100 CSMGIQRSALGRILDMHPQLLTSDPYNDLYPVFDFLFNEVHIPFPDIQKSIIRCPRLLLC 159

Query: 135 DLKTQLRPSFKFLVEFGFKGSHKINCQTTVLLVSSVERTLKPKIDFLKNLGLSDEEVERM 194
            +  QLRP+F FL + GF G H I CQ T+LLVSSVE TL PK+++L+NLG S +EV +M
Sbjct: 160 SVDDQLRPTFYFLKKLGFAGPHAITCQNTLLLVSSVEDTLVPKLEYLQNLGFSYKEVVKM 219

Query: 195 VIRSPGLLTFSVENNLVPKVDFFIQEMKGDLDELKKFPQYFSFSLERKIKPRYRILVDHG 254
           V+RSPGLLTFS+E N  PKV++F+ EMKGDL ELK+FPQYFSFSLE KIKPR+R+L +HG
Sbjct: 220 VVRSPGLLTFSIEKNFQPKVEYFLDEMKGDLAELKRFPQYFSFSLEGKIKPRHRLLAEHG 279

Query: 255 FKLPLAQMLRVSDGEFNARLIEMRLKLAERSSL 287
           F LPL +ML+VSDGEFN RLIEMRL+LA+   L
Sbjct: 280 FSLPLPEMLKVSDGEFNLRLIEMRLQLADERYL 312

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|53749462|gb|AAU90316.1| Putative mTERF domain containing protein, identical [Solanum demissum] Back     alignment and taxonomy information
>gi|56744283|gb|AAW28562.1| Putative mTERF domain containing protein, identical [Solanum demissum] Back     alignment and taxonomy information
>gi|147807241|emb|CAN77430.1| hypothetical protein VITISV_001739 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224108998|ref|XP_002315044.1| predicted protein [Populus trichocarpa] gi|222864084|gb|EEF01215.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255562900|ref|XP_002522455.1| conserved hypothetical protein [Ricinus communis] gi|223538340|gb|EEF39947.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449478661|ref|XP_004155384.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101227489 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449434776|ref|XP_004135172.1| PREDICTED: uncharacterized protein LOC101218193 [Cucumis sativus] Back     alignment and taxonomy information
>gi|3461829|gb|AAC32923.1| predicted by genefinder and genscan [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|42568893|ref|NP_178405.2| transcription termination factor family protein [Arabidopsis thaliana] gi|28204784|gb|AAO37134.1| hypothetical protein [Arabidopsis thaliana] gi|50058841|gb|AAT69165.1| hypothetical protein At2g03050 [Arabidopsis thaliana] gi|330250565|gb|AEC05659.1| transcription termination factor family protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query288
TAIR|locus:2056745283 EMB93 "EMBRYO DEFECTIVE 93" [A 0.902 0.918 0.551 4e-74
TAIR|locus:2062328303 AT2G34620 "AT2G34620" [Arabido 0.902 0.858 0.380 1.3e-45
TAIR|locus:2039240333 EMB3114 "AT2G36000" [Arabidops 0.892 0.771 0.308 5.6e-29
TAIR|locus:2087926274 AT3G18870 "AT3G18870" [Arabido 0.899 0.945 0.308 3.1e-28
TAIR|locus:2207420591 AT1G78930 "AT1G78930" [Arabido 0.649 0.316 0.293 1.5e-21
TAIR|locus:505006461493 MDA1 "AT4G14605" [Arabidopsis 0.677 0.395 0.323 4e-21
TAIR|locus:2162092496 AT5G55580 "AT5G55580" [Arabido 0.586 0.340 0.302 2.8e-18
TAIR|locus:2049329641 EMB2219 "embryo defective 2219 0.680 0.305 0.316 3.1e-18
TAIR|locus:2139394541 BSM "AT4G02990" [Arabidopsis t 0.666 0.354 0.280 3.2e-16
TAIR|locus:2051814507 AT2G44020 "AT2G44020" [Arabido 0.649 0.368 0.271 1.3e-11
TAIR|locus:2056745 EMB93 "EMBRYO DEFECTIVE 93" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
 Identities = 144/261 (55%), Positives = 192/261 (73%)

Query:    25 SASTNDAGLLFRQKILHLQALNVNPQKALHQNPNFRCTPXXXXXXXXXXXXXXXXXRPAV 84
             +  T+D G+LFR+K+++LQ LNV+P KAL  NP+ R  P                 RPAV
Sbjct:    22 AGETSDTGILFREKLIYLQDLNVDPHKALRVNPSLRSAPISSVVSVETLLSSTGLSRPAV 81

Query:    85 GRILDMHPKLLTADIPRDLEPIIDFLLEEVLIPFNDLPKSLTRCPRILVSDLKTQLRPSF 144
             GRILDM P LLT+D   ++ P++ FL  E+ I   D+PKS++RCPR+L+S +  QLRP+ 
Sbjct:    82 GRILDMFPDLLTSDPESEILPVLRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPAL 141

Query:   145 KFLVEFGFKGSHKINCQTTVLLVSSVERTLKPKIDFLKN-LGLSDEEVERMVIRSPGLLT 203
              FL   GF G   I  + TVLLVS+VERTL PKI++L+  LG + EEV +MV+RSP LLT
Sbjct:   142 TFLKTLGFVGRDTITSRNTVLLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLT 201

Query:   204 FSVENNLVPKVDFFIQEMKGDLDELKKFPQYFSFSLERKIKPRYRILVDHGFKLPLAQML 263
             +SV+NNLVPKV+FFI+EM+GD+ ELK+FPQYFSFSLERKIKPR+R+L +HG  +PL++ML
Sbjct:   202 YSVDNNLVPKVEFFIEEMRGDVKELKRFPQYFSFSLERKIKPRHRLLKEHGILMPLSEML 261

Query:   264 RVSDGEFNARLIEMRLKLAER 284
             +VSDG+FN  L+E+RL+ AER
Sbjct:   262 KVSDGQFNHWLLELRLRSAER 282
GO:0003674 "molecular_function" evidence=ND
GO:0005739 "mitochondrion" evidence=ISM
GO:0009793 "embryo development ending in seed dormancy" evidence=IMP
GO:0009507 "chloroplast" evidence=IDA
GO:0071452 "cellular response to singlet oxygen" evidence=IGI
TAIR|locus:2062328 AT2G34620 "AT2G34620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039240 EMB3114 "AT2G36000" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087926 AT3G18870 "AT3G18870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2207420 AT1G78930 "AT1G78930" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006461 MDA1 "AT4G14605" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162092 AT5G55580 "AT5G55580" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2049329 EMB2219 "embryo defective 2219" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2139394 BSM "AT4G02990" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2051814 AT2G44020 "AT2G44020" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.X.1088.1
hypothetical protein (256 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query288
pfam02536345 pfam02536, mTERF, mTERF 2e-33
PLN03196487 PLN03196, PLN03196, MOC1-like protein; Provisional 5e-28
pfam02536345 pfam02536, mTERF, mTERF 2e-17
PLN03196 487 PLN03196, PLN03196, MOC1-like protein; Provisional 1e-12
pfam02536345 pfam02536, mTERF, mTERF 8e-04
pfam02536 345 pfam02536, mTERF, mTERF 0.003
>gnl|CDD|217090 pfam02536, mTERF, mTERF Back     alignment and domain information 
 Score =  124 bits (313), Expect = 2e-33
 Identities = 70/232 (30%), Positives = 108/232 (46%), Gaps = 12/232 (5%)

Query: 49  PQKALHQNPNFRCTPLSSLLSLE---HYLLSLGLSRPAVGRILDMHPKLLTADIPRDLEP 105
           P K L      R  P+      E     ++ +G       R++   P+LL     + ++P
Sbjct: 118 PPKLLFSLLISRPRPVCGKEVFEESLKKVVEMGFDPTTFKRVIAKRPRLLLYSSDKTIKP 177

Query: 106 IIDFLLEEVLIPFNDLPKSLTRCPRILVSDLKTQLRPSFKFLVEFGFKGSHKINCQTTVL 165
            ++FL + +     D+   L +CP +L S  K +L+           +    I  +    
Sbjct: 178 NVEFL-KSLGFSVEDVWAILKKCPELLGSSEKKKLQTQEILKTCGLLEFLSVI--KKMPQ 234

Query: 166 LVSSVERTLKPKIDFLKNLGLSDEEVERMVIRSPGLLTFSVENNLVPKVDFFIQEMKGDL 225
            VS  E+ +  KI+FL  LG S EE+ +MV R P LL  SVE     K +F ++EM   L
Sbjct: 235 FVSYSEQKILNKIEFLLGLGFSREEIAKMVKRCPQLLGLSVEKV-KKKTEFLVKEMNWPL 293

Query: 226 DELKKFPQYFSFSLERKIKPR---YRILVDHGF--KLPLAQMLRVSDGEFNA 272
            EL +FPQ F +SLE++IKPR    + L+  G      L+ ML+ +D EF  
Sbjct: 294 KELVEFPQVFGYSLEKRIKPRCNVVKALMSKGKSILPSLSSMLKCTDEEFLQ 345

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345
>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional Back     alignment and domain information
>gnl|CDD|217090 pfam02536, mTERF, mTERF Back     alignment and domain information
>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional Back     alignment and domain information
>gnl|CDD|217090 pfam02536, mTERF, mTERF Back     alignment and domain information
>gnl|CDD|217090 pfam02536, mTERF, mTERF Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 288
PLN03196487 MOC1-like protein; Provisional 100.0
PF02536345 mTERF: mTERF; InterPro: IPR003690 This family curr 100.0
PLN03196 487 MOC1-like protein; Provisional 100.0
PF02536345 mTERF: mTERF; InterPro: IPR003690 This family curr 99.96
KOG1267413 consensus Mitochondrial transcription termination 99.82
KOG1267413 consensus Mitochondrial transcription termination 99.73
smart0073331 Mterf Mitochondrial termination factor repeats. Hu 97.09
smart0073331 Mterf Mitochondrial termination factor repeats. Hu 96.93
PF1449094 HHH_4: Helix-hairpin-helix containing domain; PDB: 85.74
cd04790172 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding doma 81.11
>PLN03196 MOC1-like protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.9e-45  Score=351.74  Aligned_cols=248  Identities=29%  Similarity=0.534  Sum_probs=187.9

Q ss_pred             chhHhHHHHhhCCCChh---hHhhhCCCCCCCCCC-ChHHHHHHHHhCCCChhHHHHHHHhCCcccccCCCCChHHHHHH
Q 023027           34 LFRQKILHLQALNVNPQ---KALHQNPNFRCTPLS-SLLSLEHYLLSLGLSRPAVGRILDMHPKLLTADIPRDLEPIIDF  109 (288)
Q Consensus        34 ~~~~~~~~L~~~G~~~~---~l~~~~P~ll~~s~~-~l~~~v~~L~~~Gls~~~i~~ii~~~P~lL~~~~~~~l~~~l~~  109 (288)
                      .+.++++||.++|++.+   +++.++|.+|+++.+ ++.++++||.++|++.+++++++.++|++|++++++++.++++|
T Consensus       159 ~L~P~v~fL~~lGvs~~~i~~~l~r~P~LL~~~~e~~l~p~v~fL~~lGvs~~~i~~il~~~P~iL~~sve~~i~P~v~f  238 (487)
T PLN03196        159 DLAPVVKYLQGLDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDY  238 (487)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHhCchhhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcHHhhcChhhhHHHHHHH
Confidence            34455555555555543   345555555555554 35556666666666666666666666666666666666666666


Q ss_pred             HhhhcCCCCCCHhHHHhhCCccceeccccchhhHHHHHHHhccCCC--Cce-----------------------------
Q 023027          110 LLEEVLIPFNDLPKSLTRCPRILVSDLKTQLRPSFKFLVEFGFKGS--HKI-----------------------------  158 (288)
Q Consensus       110 L~~~lG~s~~~i~~il~~~P~lL~~~~~~~l~~~v~~L~~lG~~~~--~~l-----------------------------  158 (288)
                      |+ ++|++.++|++++.++|++|+++++++++|++++|+++|+++.  ..+                             
T Consensus       239 L~-~lGv~~~~I~~il~~~P~iL~~sle~~lkp~v~~L~elGv~~~~i~~lI~~~P~iL~~s~e~kl~~~~~fL~~~lG~  317 (487)
T PLN03196        239 LE-SLGLPRLAVARILEKRPYILGFDLEETVKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKI  317 (487)
T ss_pred             HH-HcCCCHHHHHHHHHhCCceeEcCHHHhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEecHHHhhhHHHHHHHHhhCC
Confidence            66 4666666677777777777777666667777777766666542  122                             


Q ss_pred             --------eecccceeeecchhcHHHHHHHHHHcCCCHHHHHHHHHhCCceeecCcccchhhHHHHHHHhhcCcHHHHhh
Q 023027          159 --------NCQTTVLLVSSVERTLKPKIDFLKNLGLSDEEVERMVIRSPGLLTFSVENNLVPKVDFFIQEMKGDLDELKK  230 (288)
Q Consensus       159 --------i~~~P~lL~~~~~~~l~~kv~~L~~lG~s~~~v~~~l~~~P~iL~~s~e~~l~~k~~fL~~~~g~~~~~l~~  230 (288)
                              +.++|.+++.+. +++.++++||+++||+.+++..|+.++|++|++|.+ +|++|++||.++||++.++|++
T Consensus       318 s~e~i~~~v~k~P~il~lSe-~kl~~kvefL~~~Gls~edI~~mv~k~P~lL~~S~~-~l~~k~dFlvneMg~~~~~Iv~  395 (487)
T PLN03196        318 DPEDFGRVIEKLPQIVSLNR-NVALKHVEFLRGRGFSAQDVAKMVVRCPQILALNLE-IMKPSLEFFKKEMKRPLKELVE  395 (487)
T ss_pred             CHHHHHHHHHhcchhhcccH-HHHHHHHHHHHHcCCCHHHHHHHHHhCCceeeccHH-HHHHHHHHHHHHhCCCHHHHHh
Confidence                    334555555553 467889999999999999999999999999999997 9999999999999999999999


Q ss_pred             CCcccccccccccHhhHHHHHHCCCCCChhhhcccCHHHHHHHHHHHHHhhhhh
Q 023027          231 FPQYFSFSLERKIKPRYRILVDHGFKLPLAQMLRVSDGEFNARLIEMRLKLAER  284 (288)
Q Consensus       231 ~P~~L~~sle~~l~pR~~~L~~~G~~~~l~~~l~~s~~~F~~~~~~~~~~~~~~  284 (288)
                      +|.+|+||+|+||+|||++|+++|+++++.++|++||++|+++|+..+.++++.
T Consensus       396 fP~~LsySLEkRI~PR~~~L~~kGl~~sL~~~L~~sd~~F~~r~v~~y~e~~~~  449 (487)
T PLN03196        396 FPAYFTYGLESRIKPRYERVAKKGIKCSLAWFLNCSDDKFEQRMSGDFIEGEEM  449 (487)
T ss_pred             ChHHhccChhhhhHHHHHHHHHcCCCCCHHHHhccCHHHHHHHHhhhccccccc
Confidence            999999999999999999999999999999999999999999999999887664

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions [] Back     alignment and domain information
>PLN03196 MOC1-like protein; Provisional Back     alignment and domain information
>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions [] Back     alignment and domain information
>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only] Back     alignment and domain information
>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only] Back     alignment and domain information
>smart00733 Mterf Mitochondrial termination factor repeats Back     alignment and domain information
>smart00733 Mterf Mitochondrial termination factor repeats Back     alignment and domain information
>PF14490 HHH_4: Helix-hairpin-helix containing domain; PDB: 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query288
3m66_A270 Mterf3, mterf domain-containing protein 1, mitocho 1e-39
3m66_A 270 Mterf3, mterf domain-containing protein 1, mitocho 1e-12
3m66_A 270 Mterf3, mterf domain-containing protein 1, mitocho 4e-10
3mva_O343 Transcription termination factor, mitochondrial; a 8e-27
3mva_O343 Transcription termination factor, mitochondrial; a 5e-21
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270 Back     alignment and structure
 Score =  138 bits (349), Expect = 1e-39
 Identities = 43/237 (18%), Positives = 85/237 (35%), Gaps = 16/237 (6%)

Query: 51  KALHQNPNF-RCTPLSSLLSLEHYLLSLGLSRPAVGRILDMHPKLLTADIPRDLEPIIDF 109
           K         R      +  +  +L  +G+    +G  L  +  + + D   +L+  + +
Sbjct: 24  KHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSED-LENLKTRVAY 82

Query: 110 LLEEVLIPFNDLPKSLTRCPRILVSDLKTQLRPSFKFLVEFGFKGSH--KINCQTTVLLV 167
           L         D+ + + + P +L   ++        F  E          +  +   LL 
Sbjct: 83  L-HSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLT 141

Query: 168 SSVERTLKPKIDFLKNLGLSDEEVERMVIRSPGLLTFSVENNLVPKVDFFIQEMKGDLDE 227
            S+E   +    +   LG    E++ M+ R P +LT + +  L    DF    M      
Sbjct: 142 GSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTAN-KMKLTETFDFVHNVMSIPHHI 200

Query: 228 LKKFPQYFSFSLERKIKPRYRILVDHGFK---------LPLAQMLRVSDGEFNARLI 275
           + KFPQ F+  L + +K R+  L   G           + L +++ + D  F   + 
Sbjct: 201 IVKFPQVFNTRLFK-VKERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIFCEEIA 256
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270 Back     alignment and structure
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270 Back     alignment and structure
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343 Back     alignment and structure
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query288
3m66_A270 Mterf3, mterf domain-containing protein 1, mitocho 100.0
3mva_O343 Transcription termination factor, mitochondrial; a 100.0
4fp9_B335 Mterf domain-containing protein 2; modification en 100.0
3m66_A270 Mterf3, mterf domain-containing protein 1, mitocho 99.97
4fp9_B335 Mterf domain-containing protein 2; modification en 99.92
3mva_O 343 Transcription termination factor, mitochondrial; a 99.92
4fzv_B239 Mterf domain-containing protein 2; mterf fold, met 99.45
4fzv_B239 Mterf domain-containing protein 2; mterf fold, met 98.12
3ff5_A54 PEX14P, peroxisomal biogenesis factor 14; protein 86.97
4ae4_A118 Ubiquitin-associated protein 1; protein transport, 86.51
1oqy_A368 HHR23A, UV excision repair protein RAD23 homolog A 81.21
4ae4_A118 Ubiquitin-associated protein 1; protein transport, 80.95
2ooa_A52 E3 ubiquitin-protein ligase CBL-B; alpha-helical d 80.73
3ff5_A54 PEX14P, peroxisomal biogenesis factor 14; protein 80.56
2w84_A70 Peroxisomal membrane protein PEX14; zellweger synd 80.36
1ify_A49 HHR23A, UV excision repair protein RAD23 homolog A 80.21
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Back     alignment and structure
Probab=100.00  E-value=3e-44  Score=320.36  Aligned_cols=239  Identities=20%  Similarity=0.337  Sum_probs=218.9

Q ss_pred             hHhHHHHhhCCCChhhHhhhCCCC----CCCCCC-ChHHHHHHHHhCCCChhHHHHHHHhCCcccccCCCCChHHHHHHH
Q 023027           36 RQKILHLQALNVNPQKALHQNPNF----RCTPLS-SLLSLEHYLLSLGLSRPAVGRILDMHPKLLTADIPRDLEPIIDFL  110 (288)
Q Consensus        36 ~~~~~~L~~~G~~~~~l~~~~P~l----l~~s~~-~l~~~v~~L~~~Gls~~~i~~ii~~~P~lL~~~~~~~l~~~l~~L  110 (288)
                      .++++||.++|++.+++ .+.|.+    +.++.+ ++.++++||+++|+++++|+++++++|.++++++++ +.++++||
T Consensus         6 s~~l~~L~~lGv~~~~i-~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L   83 (270)
T 3m66_A            6 SETLQKLVLLGVDLSKI-EKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYL   83 (270)
T ss_dssp             HHHHHHHHHTTCCHHHH-TTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHH
T ss_pred             hHHHHHHHHcCCCHHHH-hhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHH
Confidence            47899999999999886 556776    899986 899999999999999999999999999999999986 99999999


Q ss_pred             hhhcCCCCCCHhHHHhhCCccceeccccchhhHHHHH-HHhccCCC--CceeecccceeeecchhcHHHHHHHH-HHcCC
Q 023027          111 LEEVLIPFNDLPKSLTRCPRILVSDLKTQLRPSFKFL-VEFGFKGS--HKINCQTTVLLVSSVERTLKPKIDFL-KNLGL  186 (288)
Q Consensus       111 ~~~lG~s~~~i~~il~~~P~lL~~~~~~~l~~~v~~L-~~lG~~~~--~~li~~~P~lL~~~~~~~l~~kv~~L-~~lG~  186 (288)
                      + ++|+++++|.+++.++|++|++++++ ++++++|| .++|+++.  .+++.++|.+++.+.+ .++++++++ +++||
T Consensus        84 ~-~~Gls~~~i~~~l~~~P~lL~~s~~~-l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e-~~~~~v~~l~~~~G~  160 (270)
T 3m66_A           84 H-SKNFSKADVAQMVRKAPFLLNFSVER-LDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE-PVKENMKVYRLELGF  160 (270)
T ss_dssp             H-HTTCCHHHHHHHHHHSTTGGGSCHHH-HHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSH-HHHHHHHHHHHTSCC
T ss_pred             H-HcCCCHHHHHHHHHhCCHHHcCCHHH-HHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechH-HHHHHHHHHHHHcCC
Confidence            9 69999999999999999999999985 99999999 57999865  5889999999999985 699999976 79999


Q ss_pred             CHHHHHHHHHhCCceeecCcccchhhHHHHHHHhhcCcHHHHhhCCcccccccccccHhhHHHHHHC---CC------CC
Q 023027          187 SDEEVERMVIRSPGLLTFSVENNLVPKVDFFIQEMKGDLDELKKFPQYFSFSLERKIKPRYRILVDH---GF------KL  257 (288)
Q Consensus       187 s~~~v~~~l~~~P~iL~~s~e~~l~~k~~fL~~~~g~~~~~l~~~P~~L~~sle~~l~pR~~~L~~~---G~------~~  257 (288)
                      +.+|+..|+.++|++|++|.+ +|++|++||.++||++.++|.++|.+|+||+| ||+|||.+|+..   |+      .+
T Consensus       161 s~~ei~~~v~~~P~il~~s~~-~l~~k~~fL~~~mg~~~~~i~~~P~~l~~Sle-ri~pR~~~l~~L~~~g~~~~~~~~~  238 (270)
T 3m66_A          161 KHNEIQHMITRIPKMLTANKM-KLTETFDFVHNVMSIPHHIIVKFPQVFNTRLF-KVKERHLFLTYLGRAQYDPAKPNYI  238 (270)
T ss_dssp             CHHHHHHHHHHCGGGGTSCHH-HHHHHHHHHHTTSCCCHHHHHHCGGGGGSCHH-HHHHHHHHHHHHTCCCCCTTSSSCC
T ss_pred             CHHHHHHHHHhCChhheecHH-HHHHHHHHHHHHhCCCHHHHHhCchHhhCCHH-HHHHHHHHHHHhhccCCCCCCCCCC
Confidence            999999999999999999997 99999999999999999999999999999999 999999998764   44      26


Q ss_pred             ChhhhcccCHHHHHHHHHHHHHhh
Q 023027          258 PLAQMLRVSDGEFNARLIEMRLKL  281 (288)
Q Consensus       258 ~l~~~l~~s~~~F~~~~~~~~~~~  281 (288)
                      ++.+++++||++|+++|++...+.
T Consensus       239 ~L~~~l~~sd~~F~~~~~~~~~ee  262 (270)
T 3m66_A          239 SLDKLVSIPDEIFCEEIAKASVQD  262 (270)
T ss_dssp             CHHHHHHSCHHHHHHHTTCSCHHH
T ss_pred             CHHHHhcCCHHHHHHHHhcCCHHH
Confidence            778899999999999997765543
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Back     alignment and structure
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens} Back     alignment and structure
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Back     alignment and structure
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens} Back     alignment and structure
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Back     alignment and structure
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} Back     alignment and structure
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} Back     alignment and structure
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus} Back     alignment and structure
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B* Back     alignment and structure
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Back     alignment and structure
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B* Back     alignment and structure
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A Back     alignment and structure
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus} Back     alignment and structure
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A Back     alignment and structure
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query288
d1oqya141 DNA repair protein Hhr23a {Human (Homo sapiens) [T 82.39
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.39  E-value=0.77  Score=26.41  Aligned_cols=26  Identities=19%  Similarity=0.238  Sum_probs=19.8

Q ss_pred             ChHHHHHHHHhCCCChhHHHHHHHhC
Q 023027           66 SLLSLEHYLLSLGLSRPAVGRILDMH   91 (288)
Q Consensus        66 ~l~~~v~~L~~~Gls~~~i~~ii~~~   91 (288)
                      +.++.|+-|.++||+++++.+.+..+
T Consensus         3 ~~e~~i~~L~~MGF~~~~a~~AL~~~   28 (41)
T d1oqya1           3 EYETMLTEIMSMGYERERVVAALRAS   28 (41)
T ss_dssp             THHHHHHHHHTTTCCSHHHHHHHHHS
T ss_pred             hHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence            45677788888888888887777766