Citrus Sinensis ID: 023028

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
MGSLKNETENEVNQREQGEQEQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADRLLH
cccccccHHHHHHHHHHcccccccccccccccccccEEcccccHHHHHHHHHHHHcccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccc
cccccccccccccccccccccccHHccccccccccccccccccHHHHHHHHHHHcccccHHHccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcHHHHcHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccHHHHcccHHHHHHHHHHHHHHHHc
mgslknetenevnqreqgeqeqedqepILMEQNqrfcmfpiRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARflndiqipEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLkkrglmpgltfsnelisrdeglhcDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADRLLH
mgslknetenevnqreqgeqeqedqepILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADRLLH
MGSLKNETenevnqreqgeqeqedqePILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADRLLH
********************************NQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADR***
*****************************MEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADRLLH
*************************EPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADRLLH
*************************EPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADRLLH
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MGSLxxxxxxxxxxxxxxxxxxxxxEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADRLLH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query288 2.2.26 [Sep-21-2011]
P50651341 Ribonucleoside-diphosphat yes no 0.972 0.821 0.815 1e-136
P49730329 Ribonucleoside-diphosphat N/A no 0.913 0.799 0.764 1e-120
Q6Y657333 Putative ribonucleoside-d no no 0.913 0.789 0.753 1e-118
Q9LSD0332 Ribonucleoside-diphosphat no no 0.913 0.792 0.75 1e-113
P42521338 Ribonucleoside-diphosphat yes no 0.909 0.775 0.699 1e-108
P79733386 Ribonucleoside-diphosphat yes no 0.986 0.735 0.629 1e-106
Q60561386 Ribonucleoside-diphosphat N/A no 0.916 0.683 0.679 1e-106
P07201384 Ribonucleoside-diphosphat N/A no 0.909 0.682 0.684 1e-106
Q4KLN6390 Ribonucleoside-diphosphat yes no 0.916 0.676 0.675 1e-106
P11157390 Ribonucleoside-diphosphat yes no 0.916 0.676 0.675 1e-106
>sp|P50651|RIR2A_ARATH Ribonucleoside-diphosphate reductase small chain A OS=Arabidopsis thaliana GN=RNR2A PE=1 SV=2 Back     alignment and function desciption
 Score =  484 bits (1245), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 234/287 (81%), Positives = 255/287 (88%), Gaps = 7/287 (2%)

Query: 1   MGSLKNETENEVNQREQGEQEQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTA 60
           MGSLK   E +    E+GE E    EP+LM QNQRF MFPIRYK +WEMYKKA+ASFWTA
Sbjct: 1   MGSLK---EGQGRDMEEGESE----EPLLMAQNQRFTMFPIRYKSIWEMYKKAEASFWTA 53

Query: 61  EEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGF 120
           EEVDLS DVQ WE L DSEKHFISH+LAFFAASDGIVLENLAARFLND+Q+PEARAFYGF
Sbjct: 54  EEVDLSTDVQQWEALTDSEKHFISHILAFFAASDGIVLENLAARFLNDVQVPEARAFYGF 113

Query: 121 QIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERL 180
           QIAMENIHSEMYSLLLET+IKDSKEK RLFNAIE IPC+++KAKW LDWI S  SFA RL
Sbjct: 114 QIAMENIHSEMYSLLLETFIKDSKEKDRLFNAIETIPCISKKAKWCLDWIQSPMSFAVRL 173

Query: 181 VGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH 240
           V FACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL+K+L 
Sbjct: 174 VAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLQKQLP 233

Query: 241 WQKVHHMVHEAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADRLL 287
            +KV+ +VHEAVEIET+FVC+ALPC LIGMNS+LMSQYI+FVADRLL
Sbjct: 234 LEKVYQIVHEAVEIETEFVCKALPCDLIGMNSNLMSQYIQFVADRLL 280
Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 7EC: .EC: 4EC: .EC: 1
>sp|P49730|RIR2_TOBAC Ribonucleoside-diphosphate reductase small chain OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function description
>sp|Q6Y657|RIR2B_ARATH Putative ribonucleoside-diphosphate reductase small chain B OS=Arabidopsis thaliana GN=RNR2B PE=5 SV=1 Back     alignment and function description
>sp|Q9LSD0|RIR2C_ARATH Ribonucleoside-diphosphate reductase small chain C OS=Arabidopsis thaliana GN=TSO2 PE=2 SV=1 Back     alignment and function description
>sp|P42521|RIR2_DICDI Ribonucleoside-diphosphate reductase small subunit OS=Dictyostelium discoideum GN=rnrB-1 PE=2 SV=2 Back     alignment and function description
>sp|P79733|RIR2_DANRE Ribonucleoside-diphosphate reductase subunit M2 OS=Danio rerio GN=rrm2 PE=1 SV=1 Back     alignment and function description
>sp|Q60561|RIR2_MESAU Ribonucleoside-diphosphate reductase subunit M2 OS=Mesocricetus auratus GN=RRM2 PE=2 SV=1 Back     alignment and function description
>sp|P07201|RIR2_SPISO Ribonucleoside-diphosphate reductase small chain OS=Spisula solidissima PE=2 SV=2 Back     alignment and function description
>sp|Q4KLN6|RIR2_RAT Ribonucleoside-diphosphate reductase subunit M2 OS=Rattus norvegicus GN=Rrm2 PE=2 SV=1 Back     alignment and function description
>sp|P11157|RIR2_MOUSE Ribonucleoside-diphosphate reductase subunit M2 OS=Mus musculus GN=Rrm2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query288
224100309342 predicted protein [Populus trichocarpa] 0.975 0.821 0.846 1e-141
225432510340 PREDICTED: ribonucleoside-diphosphate re 0.972 0.823 0.853 1e-140
388508294351 unknown [Lotus japonicus] 0.993 0.814 0.831 1e-140
351721787339 ribonucleotide reductase small subunit [ 0.965 0.820 0.843 1e-138
255551489342 ribonucleoside-diphosphate reductase sma 0.906 0.763 0.900 1e-138
15229476341 Ribonucleoside-diphosphate reductase sma 0.972 0.821 0.815 1e-134
297831106341 RNR2/RNR2A [Arabidopsis lyrata subsp. ly 0.972 0.821 0.804 1e-134
840719340 ribonucleotide reductase R2 [Arabidopsis 0.968 0.820 0.797 1e-129
297736972312 unnamed protein product [Vitis vinifera] 0.829 0.766 0.912 1e-124
302783485347 hypothetical protein SELMODRAFT_173451 [ 0.913 0.757 0.802 1e-123
>gi|224100309|ref|XP_002311826.1| predicted protein [Populus trichocarpa] gi|222851646|gb|EEE89193.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 243/287 (84%), Positives = 265/287 (92%), Gaps = 6/287 (2%)

Query: 1   MGSLKNETENEVNQREQGEQEQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTA 60
           MGSL+N TE+E  +      E++ QEPIL EQNQRFCMFPIRYK++WEMYKKA+ASFWTA
Sbjct: 1   MGSLRNGTESERIR------EEDKQEPILKEQNQRFCMFPIRYKELWEMYKKAEASFWTA 54

Query: 61  EEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGF 120
           EEVDLS+D+Q WE L DSEKHFISHVLAFFAASDGIVLENLAARFL D+QIPEARAFYGF
Sbjct: 55  EEVDLSRDMQQWEALSDSEKHFISHVLAFFAASDGIVLENLAARFLYDVQIPEARAFYGF 114

Query: 121 QIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERL 180
           QIAMENIHSEMYSLLLETYIKDS+EKHRLFNAIENIPCVA+KAKWALDWI SS  FAERL
Sbjct: 115 QIAMENIHSEMYSLLLETYIKDSREKHRLFNAIENIPCVAEKAKWALDWIQSSMVFAERL 174

Query: 181 VGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH 240
           V FAC+EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL+++LH
Sbjct: 175 VAFACIEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLQRQLH 234

Query: 241 WQKVHHMVHEAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADRLL 287
           WQKV+H+V EAVEIET+FVCEALPCALIGMN++LM  YIKFVADRLL
Sbjct: 235 WQKVYHIVGEAVEIETKFVCEALPCALIGMNATLMGDYIKFVADRLL 281

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225432510|ref|XP_002279943.1| PREDICTED: ribonucleoside-diphosphate reductase small chain A [Vitis vinifera] Back     alignment and taxonomy information
>gi|388508294|gb|AFK42213.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|351721787|ref|NP_001237733.1| ribonucleotide reductase small subunit [Glycine max] gi|4894211|gb|AAD32302.1| ribonucleotide reductase small subunit [Glycine max] Back     alignment and taxonomy information
>gi|255551489|ref|XP_002516790.1| ribonucleoside-diphosphate reductase small chain, putative [Ricinus communis] gi|223543878|gb|EEF45404.1| ribonucleoside-diphosphate reductase small chain, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|15229476|ref|NP_189000.1| Ribonucleoside-diphosphate reductase small chain A [Arabidopsis thaliana] gi|27735240|sp|P50651.2|RIR2A_ARATH RecName: Full=Ribonucleoside-diphosphate reductase small chain A; AltName: Full=Ribonucleoside-diphosphate reductase R2A subunit; Short=AtRNR2; Short=Protein R2at; AltName: Full=Ribonucleotide reductase small subunit A gi|13937232|gb|AAK50108.1|AF372971_1 AT3g23580/MDB19_7 [Arabidopsis thaliana] gi|9294514|dbj|BAB02776.1| ribonucleotide reductase [Arabidopsis thaliana] gi|23505945|gb|AAN28832.1| At3g23580/MDB19_7 [Arabidopsis thaliana] gi|332643258|gb|AEE76779.1| Ribonucleoside-diphosphate reductase small chain A [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297831106|ref|XP_002883435.1| RNR2/RNR2A [Arabidopsis lyrata subsp. lyrata] gi|297329275|gb|EFH59694.1| RNR2/RNR2A [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|840719|emb|CAA54549.1| ribonucleotide reductase R2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297736972|emb|CBI26173.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|302783485|ref|XP_002973515.1| hypothetical protein SELMODRAFT_173451 [Selaginella moellendorffii] gi|302787555|ref|XP_002975547.1| hypothetical protein SELMODRAFT_175019 [Selaginella moellendorffii] gi|300156548|gb|EFJ23176.1| hypothetical protein SELMODRAFT_175019 [Selaginella moellendorffii] gi|300158553|gb|EFJ25175.1| hypothetical protein SELMODRAFT_173451 [Selaginella moellendorffii] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query288
TAIR|locus:2088040341 RNR2A "ribonucleotide reductas 0.906 0.765 0.854 4.6e-121
TAIR|locus:2092030332 TSO2 "TSO MEANING 'UGLY' IN CH 0.906 0.786 0.751 3.9e-108
DICTYBASE|DDB_G0274021338 rnrB-2 "ribonucleoside-diphosp 0.906 0.772 0.698 5e-99
DICTYBASE|DDB_G0272616338 rnrB-1 "ribonucleoside-diphosp 0.906 0.772 0.698 5e-99
UNIPROTKB|Q60561386 RRM2 "Ribonucleoside-diphospha 0.906 0.676 0.683 4.7e-96
RGD|2323655390 LOC100359539 "ribonucleotide r 0.906 0.669 0.683 4.7e-96
RGD|1598310390 Rrm2 "ribonucleotide reductase 0.906 0.669 0.679 9.7e-96
MGI|MGI:98181390 Rrm2 "ribonucleotide reductase 0.906 0.669 0.679 1.6e-95
ZFIN|ZDB-GENE-990415-25386 rrm2 "ribonucleotide reductase 0.906 0.676 0.679 1.6e-95
UNIPROTKB|I3LUY0329 RRM2 "Uncharacterized protein" 0.906 0.793 0.683 2e-95
TAIR|locus:2088040 RNR2A "ribonucleotide reductase 2A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1191 (424.3 bits), Expect = 4.6e-121, P = 4.6e-121
 Identities = 223/261 (85%), Positives = 242/261 (92%)

Query:    27 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHV 86
             P+LM QNQRF MFPIRYK +WEMYKKA+ASFWTAEEVDLS DVQ WE L DSEKHFISH+
Sbjct:    20 PLLMAQNQRFTMFPIRYKSIWEMYKKAEASFWTAEEVDLSTDVQQWEALTDSEKHFISHI 79

Query:    87 LAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEK 146
             LAFFAASDGIVLENLAARFLND+Q+PEARAFYGFQIAMENIHSEMYSLLLET+IKDSKEK
Sbjct:    80 LAFFAASDGIVLENLAARFLNDVQVPEARAFYGFQIAMENIHSEMYSLLLETFIKDSKEK 139

Query:   147 HRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGL 206
              RLFNAIE IPC+++KAKW LDWI S  SFA RLV FACVEGIFFSGSFCAIFWLKKRGL
Sbjct:   140 DRLFNAIETIPCISKKAKWCLDWIQSPMSFAVRLVAFACVEGIFFSGSFCAIFWLKKRGL 199

Query:   207 MPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEALPCA 266
             MPGLTFSNELISRDEGLHCDFACLLYSLL+K+L  +KV+ +VHEAVEIET+FVC+ALPC 
Sbjct:   200 MPGLTFSNELISRDEGLHCDFACLLYSLLQKQLPLEKVYQIVHEAVEIETEFVCKALPCD 259

Query:   267 LIGMNSSLMSQYIKFVADRLL 287
             LIGMNS+LMSQYI+FVADRLL
Sbjct:   260 LIGMNSNLMSQYIQFVADRLL 280
GO:0004748 "ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor" evidence=IEA;ISS;IDA
GO:0005737 "cytoplasm" evidence=ISM
GO:0009186 "deoxyribonucleoside diphosphate metabolic process" evidence=IEA;ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0046914 "transition metal ion binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005971 "ribonucleoside-diphosphate reductase complex" evidence=ISS
GO:0009259 "ribonucleotide metabolic process" evidence=TAS
GO:0006281 "DNA repair" evidence=TAS
GO:0007275 "multicellular organismal development" evidence=IMP
GO:0051726 "regulation of cell cycle" evidence=IMP
GO:0005829 "cytosol" evidence=IDA
GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA
TAIR|locus:2092030 TSO2 "TSO MEANING 'UGLY' IN CHINESE 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0274021 rnrB-2 "ribonucleoside-diphosphate reductase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0272616 rnrB-1 "ribonucleoside-diphosphate reductase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q60561 RRM2 "Ribonucleoside-diphosphate reductase subunit M2" [Mesocricetus auratus (taxid:10036)] Back     alignment and assigned GO terms
RGD|2323655 LOC100359539 "ribonucleotide reductase M2 polypeptide" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|1598310 Rrm2 "ribonucleotide reductase M2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:98181 Rrm2 "ribonucleotide reductase M2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-990415-25 rrm2 "ribonucleotide reductase M2 polypeptide" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|I3LUY0 RRM2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P50651RIR2A_ARATH1, ., 1, 7, ., 4, ., 10.81530.97220.8211yesno
Q4KLN6RIR2_RAT1, ., 1, 7, ., 4, ., 10.67540.91660.6769yesno
P49730RIR2_TOBAC1, ., 1, 7, ., 4, ., 10.76420.91310.7993N/Ano
P42521RIR2_DICDI1, ., 1, 7, ., 4, ., 10.69960.90970.7751yesno
P11157RIR2_MOUSE1, ., 1, 7, ., 4, ., 10.67540.91660.6769yesno
Q9QTF2RIR2_RSIV1, ., 1, 7, ., 4, ., 10.55850.87150.8044N/Ano
P50649RIR2_PLAFG1, ., 1, 7, ., 4, ., 10.65640.90270.8074N/Ano
P79733RIR2_DANRE1, ., 1, 7, ., 4, ., 10.62970.98610.7357yesno
P36603RIR2_SCHPO1, ., 1, 7, ., 4, ., 10.61390.93750.6905yesno
Q9DHU2RIR2_YLDV1, ., 1, 7, ., 4, ., 10.66920.90970.8061N/Ano
P31350RIR2_HUMAN1, ., 1, 7, ., 4, ., 10.67160.91660.6786yesno
Q8SRR2RIR2_ENCCU1, ., 1, 7, ., 4, ., 10.61650.91310.8092yesno
P09938RIR2_YEAST1, ., 1, 7, ., 4, ., 10.61480.93050.6716yesno
P48592RIR2_DROME1, ., 1, 7, ., 4, ., 10.65770.90970.6666yesno
P42170RIR2_CAEEL1, ., 1, 7, ., 4, ., 10.60490.94790.7165yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.17.4.10.991
3rd Layer1.17.40.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.VIII.327.1
ribonucleoside-diphosphate reductase (EC-1.17.4.1) (342 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.I.2892.1
thymidylate kinase (EC-2.7.4.9) (210 aa)
   • •• 0.945
eugene3.00400106
RecName- Full=Nucleoside diphosphate kinase; EC=2.7.4.6; (149 aa)
     •  0.910
fgenesh4_pg.C_LG_XII000913
hypothetical protein (152 aa)
     •  0.910
gw1.II.1445.1
SubName- Full=Putative uncharacterized protein; (164 aa)
     •  0.909
gw1.VIII.102.1
hypothetical protein (223 aa)
     •• 0.909
estExt_Genewise1_v1.C_LG_III1530
nucleoside diphosphate kinase family protein (EC-2.7.4.6) (174 aa)
     •  0.909
gw1.X.4176.1
hypothetical protein (223 aa)
     •• 0.908
estExt_fgenesh4_pg.C_LG_XII0928
adenylate kinase (EC-2.7.4.3) (246 aa)
     •  0.907
estExt_fgenesh4_pm.C_LG_XV0275
SubName- Full=Putative uncharacterized protein; (248 aa)
     •  0.907
grail3.0008036902
nucleoside-diphosphate kinase (EC-2.7.4.6) (237 aa)
     •  0.905

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query288
PLN02492324 PLN02492, PLN02492, ribonucleoside-diphosphate red 0.0
PTZ00211330 PTZ00211, PTZ00211, ribonucleoside-diphosphate red 1e-176
pfam00268281 pfam00268, Ribonuc_red_sm, Ribonucleotide reductas 1e-124
cd01049288 cd01049, RNRR2, Ribonucleotide Reductase, R2/beta 1e-119
COG0208348 COG0208, NrdF, Ribonucleotide reductase, beta subu 2e-80
PRK09614324 PRK09614, nrdF, ribonucleotide-diphosphate reducta 2e-39
PRK07209369 PRK07209, PRK07209, ribonucleotide-diphosphate red 1e-36
PRK12759410 PRK12759, PRK12759, bifunctional gluaredoxin/ribon 2e-17
PRK13967322 PRK13967, nrdF1, ribonucleotide-diphosphate reduct 2e-12
TIGR04171313 TIGR04171, RNR_1b_NrdF, ribonucleoside-diphosphate 2e-12
PRK13966324 PRK13966, nrdF2, ribonucleotide-diphosphate reduct 6e-11
PRK08326311 PRK08326, PRK08326, ribonucleotide-diphosphate red 1e-09
PRK13965335 PRK13965, PRK13965, ribonucleotide-diphosphate red 3e-09
cd07911280 cd07911, RNRR2_Rv0233_like, Ribonucleotide Reducta 5e-06
PRK09101376 PRK09101, nrdB, ribonucleotide-diphosphate reducta 2e-04
>gnl|CDD|215272 PLN02492, PLN02492, ribonucleoside-diphosphate reductase Back     alignment and domain information 
 Score =  568 bits (1467), Expect = 0.0
 Identities = 211/263 (80%), Positives = 236/263 (89%)

Query: 26  EPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISH 85
           EP+L E   RFCMFPI+Y Q+WEMYKKA+ASFWTAEEVDLS D++ WE+L D E+HFISH
Sbjct: 1   EPLLAENPDRFCMFPIKYPQIWEMYKKAEASFWTAEEVDLSADLKDWEKLTDDERHFISH 60

Query: 86  VLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKE 145
           VLAFFAASDGIVLENLAARF+ ++Q+PEARAFYGFQIA+ENIHSEMYSLLL+TYIKD KE
Sbjct: 61  VLAFFAASDGIVLENLAARFMKEVQVPEARAFYGFQIAIENIHSEMYSLLLDTYIKDPKE 120

Query: 146 KHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRG 205
           K RLFNAIE IPCVA+KA WAL WI SS SFAERLV FACVEGIFFSGSFCAIFWLKKRG
Sbjct: 121 KDRLFNAIETIPCVAKKADWALRWIDSSASFAERLVAFACVEGIFFSGSFCAIFWLKKRG 180

Query: 206 LMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEALPC 265
           LMPGLTFSNELISRDEGLHCDFACLLYSLL+ +L  ++V  +V EAVEIE +FVC+ALPC
Sbjct: 181 LMPGLTFSNELISRDEGLHCDFACLLYSLLKNKLSEERVKEIVCEAVEIEKEFVCDALPC 240

Query: 266 ALIGMNSSLMSQYIKFVADRLLH 288
           AL+GMN+ LMSQYI+FVADRLL 
Sbjct: 241 ALVGMNADLMSQYIEFVADRLLV 263

Length = 324
>gnl|CDD|240315 PTZ00211, PTZ00211, ribonucleoside-diphosphate reductase small subunit; Provisional Back     alignment and domain information
>gnl|CDD|144013 pfam00268, Ribonuc_red_sm, Ribonucleotide reductase, small chain Back     alignment and domain information
>gnl|CDD|153108 cd01049, RNRR2, Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain Back     alignment and domain information
>gnl|CDD|223286 COG0208, NrdF, Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|236591 PRK09614, nrdF, ribonucleotide-diphosphate reductase subunit beta; Reviewed Back     alignment and domain information
>gnl|CDD|235968 PRK07209, PRK07209, ribonucleotide-diphosphate reductase subunit beta; Validated Back     alignment and domain information
>gnl|CDD|139206 PRK12759, PRK12759, bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|140023 PRK13967, nrdF1, ribonucleotide-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|213892 TIGR04171, RNR_1b_NrdF, ribonucleoside-diphosphate reductase, class 1b, beta subunit Back     alignment and domain information
>gnl|CDD|140022 PRK13966, nrdF2, ribonucleotide-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|236242 PRK08326, PRK08326, ribonucleotide-diphosphate reductase subunit beta; Validated Back     alignment and domain information
>gnl|CDD|184425 PRK13965, PRK13965, ribonucleotide-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|153120 cd07911, RNRR2_Rv0233_like, Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain Back     alignment and domain information
>gnl|CDD|181647 PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 288
PTZ00211330 ribonucleoside-diphosphate reductase small subunit 100.0
PLN02492324 ribonucleoside-diphosphate reductase 100.0
KOG1567344 consensus Ribonucleotide reductase, beta subunit [ 100.0
PRK07209369 ribonucleotide-diphosphate reductase subunit beta; 100.0
PF00268281 Ribonuc_red_sm: Ribonucleotide reductase, small ch 100.0
PRK09101376 nrdB ribonucleotide-diphosphate reductase subunit 100.0
COG0208348 NrdF Ribonucleotide reductase, beta subunit [Nucle 100.0
PRK09614324 nrdF ribonucleotide-diphosphate reductase subunit 100.0
cd01049288 RNRR2 Ribonucleotide Reductase, R2/beta subunit, f 100.0
PRK12759410 bifunctional gluaredoxin/ribonucleoside-diphosphat 100.0
PRK13966324 nrdF2 ribonucleotide-diphosphate reductase subunit 100.0
PRK13965335 ribonucleotide-diphosphate reductase subunit beta; 100.0
PRK13967322 nrdF1 ribonucleotide-diphosphate reductase subunit 100.0
PRK08326311 ribonucleotide-diphosphate reductase subunit beta; 100.0
cd07911280 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like 100.0
PF11583304 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_ 98.74
PF02332233 Phenol_Hydrox: Methane/Phenol/Toluene Hydroxylase; 97.88
cd01057 465 AAMH_A Aromatic and Alkene Monooxygenase Hydroxyla 97.72
cd01050297 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like 97.69
cd01058304 AAMH_B Aromatic and Alkene Monooxygenase Hydroxyla 97.59
cd00657130 Ferritin_like Ferritin-like superfamily of diiron- 97.52
PF03405330 FA_desaturase_2: Fatty acid desaturase; InterPro: 96.86
PF05138263 PaaA_PaaC: Phenylacetic acid catabolic protein; In 96.42
TIGR02156289 PA_CoA_Oxy1 phenylacetate-CoA oxygenase, PaaG subu 95.74
PRK13778314 paaA phenylacetate-CoA oxygenase subunit PaaA; Pro 95.4
PF11266219 DUF3066: Protein of unknown function (DUF3066); In 95.26
PRK13654355 magnesium-protoporphyrin IX monomethyl ester cycla 95.16
CHL00185351 ycf59 magnesium-protoporphyrin IX monomethyl ester 94.57
cd01041134 Rubrerythrin Rubrerythrin, ferritin-like diiron-bi 94.26
COG1633176 Uncharacterized conserved protein [Function unknow 94.11
cd01047 323 ACSF Aerobic Cyclase System Fe-containing subunit 94.09
PLN00179390 acyl- [acyl-carrier protein] desaturase 94.05
PRK13654 355 magnesium-protoporphyrin IX monomethyl ester cycla 94.01
TIGR02029 337 AcsF magnesium-protoporphyrin IX monomethyl ester 93.97
COG3396265 Uncharacterized conserved protein [Function unknow 93.75
PF04305253 DUF455: Protein of unknown function (DUF455); Inte 93.71
CHL00185 351 ycf59 magnesium-protoporphyrin IX monomethyl ester 93.56
TIGR02029337 AcsF magnesium-protoporphyrin IX monomethyl ester 93.55
PRK14983231 aldehyde decarbonylase; Provisional 93.26
PLN02508 357 magnesium-protoporphyrin IX monomethyl ester [oxid 92.98
cd01047323 ACSF Aerobic Cyclase System Fe-containing subunit 92.84
PLN02508357 magnesium-protoporphyrin IX monomethyl ester [oxid 92.53
cd01045139 Ferritin_like_AB Uncharacterized family of ferriti 90.9
cd01044125 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin 89.59
cd07908154 Mn_catalase_like Manganese catalase-like protein, 88.34
PF02915137 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Ru 87.62
PF10118253 Metal_hydrol: Predicted metal-dependent hydrolase; 86.81
cd01051156 Mn_catalase Manganese catalase, ferritin-like diir 83.97
>PTZ00211 ribonucleoside-diphosphate reductase small subunit; Provisional Back     alignment and domain information 
Probab=100.00  E-value=9.6e-73  Score=522.02  Aligned_cols=272  Identities=70%  Similarity=1.217  Sum_probs=265.6

Q ss_pred             hccccccccccccccCCCcceecCcCchHHHHHHHHHhcCCCCCcccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Q 023028           17 QGEQEQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGI   96 (288)
Q Consensus        17 ~~~~~~~~~~~il~~~~~~~~~~pi~y~~~~~lykk~~~~fW~p~eid~s~D~~~w~~L~~~er~~~~~~l~~l~~~d~~   96 (288)
                      +.+++.|++|+||+||+++++++|++|||+|++|++++++||+|+|||+++|+.||++||+.||+++++++++|+.+|++
T Consensus         3 ~~~~~~~~~e~il~~~~~~~~~~p~kY~~~~~ly~~~~~~fW~peEi~~s~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~~   82 (330)
T PTZ00211          3 EAMKENEEEEPLLKENPDRFVLFPIKYPDIWRMYKKAEASFWTAEEIDLGNDLKDWEKLNDGERHFIKHVLAFFAASDGI   82 (330)
T ss_pred             hhhhcccccCccccCCCCcceecCCccHHHHHHHHHHHHcCCChhhcchhhhHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhccchHH
Q 023028           97 VLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSF  176 (288)
Q Consensus        97 v~~~l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~  176 (288)
                      |++++++.+++.++.||+++|+++|+++|+||+++||+++++++.||.+++++|+++.++|.+++|++|+.+++++.+++
T Consensus        83 v~~~~~~~~~~~~~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~~~~~~~~~f~~~~~~p~i~~K~~~~~~~~~~~~~~  162 (330)
T PTZ00211         83 VLENLAQRFMREVQVPEARCFYGFQIAMENIHSETYSLLIDTYITDEEEKDRLFHAIETIPAIKKKAEWAAKWINSSNSF  162 (330)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcchHH
Confidence            99999888999999999999999999999999999999999999999999999999999999999999999999988889


Q ss_pred             HHHHHHHHHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 023028          177 AERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIET  256 (288)
Q Consensus       177 ~~~lv~~~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~i~e~~~eave~E~  256 (288)
                      ++++++++++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.++++++.++|++++.+||++|.
T Consensus       163 ~~~lv~~~~lEgi~F~sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~~~~~~~i~~l~~~ave~E~  242 (330)
T PTZ00211        163 AERLVAFAAVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYSHLKNKLPRERVQEIIKEAVEIER  242 (330)
T ss_pred             HHHHHHHHHhhhHHhhhhHHHHHHHHhcCCCcchHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCCCCHHHHHHHHHHHHhhcCC
Q 023028          257 QFVCEALPCALIGMNSSLMSQYIKFVADRLLH  288 (288)
Q Consensus       257 ~~~~~~~~~~~~Gl~~~~~~~yi~y~ad~~L~  288 (288)
                      +|+++++|++++||+.+++++||+|+||+||.
T Consensus       243 ~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~l~  274 (330)
T PTZ00211        243 EFICDALPVDLIGMNSRLMAQYIEFVADRLLV  274 (330)
T ss_pred             HHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999973

>PLN02492 ribonucleoside-diphosphate reductase Back     alignment and domain information
>KOG1567 consensus Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated Back     alignment and domain information
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1 Back     alignment and domain information
>PRK09101 nrdB ribonucleotide-diphosphate reductase subunit beta; Reviewed Back     alignment and domain information
>COG0208 NrdF Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed Back     alignment and domain information
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain Back     alignment and domain information
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>PRK13965 ribonucleotide-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>PRK13967 nrdF1 ribonucleotide-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated Back     alignment and domain information
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain Back     alignment and domain information
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A Back     alignment and domain information
>PF02332 Phenol_Hydrox: Methane/Phenol/Toluene Hydroxylase; InterPro: IPR003430 Bacterial phenol hydroxylase (1 Back     alignment and domain information
>cd01057 AAMH_A Aromatic and Alkene Monooxygenase Hydroxylase, subunit A, ferritin-like diiron-binding domain Back     alignment and domain information
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain Back     alignment and domain information
>cd01058 AAMH_B Aromatic and Alkene Monooxygenase Hydroxylase, subunit B, ferritin-like diiron-binding domain Back     alignment and domain information
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins Back     alignment and domain information
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids Back     alignment and domain information
>PF05138 PaaA_PaaC: Phenylacetic acid catabolic protein; InterPro: IPR007814 This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid [] Back     alignment and domain information
>TIGR02156 PA_CoA_Oxy1 phenylacetate-CoA oxygenase, PaaG subunit Back     alignment and domain information
>PRK13778 paaA phenylacetate-CoA oxygenase subunit PaaA; Provisional Back     alignment and domain information
>PF11266 DUF3066: Protein of unknown function (DUF3066); InterPro: IPR022612 This cyanobacterial family of fatty aldehyde decarbonylases acts on mainly C16 and C18 substrates to form hydrocarbons and carbon monoxide [] Back     alignment and domain information
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional Back     alignment and domain information
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional Back     alignment and domain information
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain Back     alignment and domain information
>COG1633 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain Back     alignment and domain information
>PLN00179 acyl- [acyl-carrier protein] desaturase Back     alignment and domain information
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional Back     alignment and domain information
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase Back     alignment and domain information
>COG3396 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins Back     alignment and domain information
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional Back     alignment and domain information
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase Back     alignment and domain information
>PRK14983 aldehyde decarbonylase; Provisional Back     alignment and domain information
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase Back     alignment and domain information
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain Back     alignment and domain information
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase Back     alignment and domain information
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria Back     alignment and domain information
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain Back     alignment and domain information
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain Back     alignment and domain information
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin [] Back     alignment and domain information
>PF10118 Metal_hydrol: Predicted metal-dependent hydrolase; InterPro: IPR016516 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query288
1h0n_A390 Cobalt Substitution Of Mouse R2 Ribonucleotide Redu 1e-106
3olj_A286 Crystal Structure Of Human Ribonucleotide Reductase 1e-104
2uw2_A332 Crystal Structure Of Human Ribonucleotide Reductase 1e-104
2o1z_A311 Plasmodium Vivax Ribonucleotide Reductase Subunit R 1e-103
3hf1_A351 Crystal Structure Of Human P53r2 Length = 351 1e-102
2vux_A326 Human Ribonucleotide Reductase, Subunit M2 B Length 1e-102
2p1i_A349 Plasmodium Yoelii Ribonucleotide Reductase Subunit 1e-101
4djn_A311 Crystal Structure Of A Ribonucleotide Reductase M2 7e-98
1smq_A399 Structure Of The Ribonucleotide Reductase Rnr2 Homo 2e-97
1jk0_A419 Ribonucleotide Reductase Y2y4 Heterodimer Length = 2e-97
1jk0_B345 Ribonucleotide Reductase Y2y4 Heterodimer Length = 9e-66
2ani_A346 Crystal Structure Of The F127y Mutant Of Ribonucleo 4e-25
4d8f_A366 Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PR 1e-24
1syy_A346 Crystal Structure Of The R2 Subunit Of Ribonucleoti 1e-24
2rcc_A346 Crystal Structure Of Putative Class I Ribonucleotid 2e-09
3mjo_A296 Small Subunit (R2f) Of Native Ribonucleotide Reduct 5e-08
2r2f_A319 Ribonucleotide Reductase R2f Protein From Salmonell 6e-08
1kgn_A329 R2f From Corynebacterium Ammoniagenes In Its Oxidis 8e-08
2alx_A340 Ribonucleotide Reductase R2 From Escherichia Coli I 2e-07
1av8_A340 Ribonucleotide Reductase R2 Subunit From E. Coli Le 2e-07
1piy_A375 Ribonucleotide Reductase R2 Soaked With Ferrous Ion 3e-07
1mrr_A375 Substitution Of Manganese For Iron In Ribonucleotid 3e-07
1xik_A375 Ribonucleoside-Diphosphate Reductase 1 Beta Chain L 3e-07
1pfr_A340 Ribonucleoside-Diphosphate Reductase 1 Beta Chain L 6e-07
1uzr_A296 Crystal Structure Of The Class Ib Ribonucleotide Re 6e-07
2av8_A340 Y122f Mutant Of Ribonucleotide Reductase From Esche 7e-07
1pm2_A339 Crystal Structure Of Manganese Substituted R2-d84e 9e-07
1pim_A375 Dithionite Reduced E. Coli Ribonucleotide Reductase 1e-06
1yfd_A375 Crystal Structure Of The Y122h Mutant Of Ribonucleo 1e-06
1rnr_A375 Autocatalytic Generation Of Dopa In The Engineered 2e-06
2xof_A375 Ribonucleotide Reductase Y122no2y Modified R2 Subun 3e-06
1biq_B375 Ribonucleoside-Diphosphate Reductase 1 Beta Chain M 5e-06
3n37_A319 Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From 9e-06
1rsr_A375 Azide Complex Of The Diferrous F208a Mutant R2 Subu 9e-06
1pj0_A375 Ribonucleotide Reductase R2-D84eW48F MUTANT SOAKED 2e-05
1biq_A375 Ribonucleoside-Diphosphate Reductase 1 Beta Chain M 4e-05
3ee4_A323 R2-Like Ligand Binding MnFE OXIDASE FROM M. TUBERCU 4e-04
>pdb|1H0N|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase To Model The Reactive Diferrous State Length = 390 Back     alignment and structure 
Iteration: 1

 Score =  382 bits (980), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 178/262 (67%), Positives = 211/262 (80%), Gaps = 1/262 (0%)
Query: 27  PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHV 86
           P+L E  +RF +FPI Y  +W+MYKKA+ASFWTAEEVDLS+D+QHWE L   E+HFISHV
Sbjct: 72  PLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEALKPDERHFISHV 131
Query: 87  LAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEK 146
           LAFFAASDGIV ENL  RF  ++Q+ EAR FYGFQIAMENIHSEMYSLL++TYIKD KE+
Sbjct: 132 LAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKER 191
Query: 147 HRLFNAIENIPCVAQKAKWALDWIHSSD-SFAERLVGFACVEGIFFSGSFCAIFWLKKRG 205
             LFNAIE +PCV +KA WAL WI   + ++ ER+V FA VEGIFFSGSF +IFWLKKRG
Sbjct: 192 EYLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRG 251
Query: 206 LMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEALPC 265
           LMPGLTFSNELISRDEGLHCDFACL++  L  +   Q+V  ++  AV IE +F+ EALP 
Sbjct: 252 LMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPAEQRVREIITNAVRIEQEFLTEALPV 311
Query: 266 ALIGMNSSLMSQYIKFVADRLL 287
            LIGMN +LM QYI+FVADRL+
Sbjct: 312 KLIGMNCTLMKQYIEFVADRLM 333
>pdb|3OLJ|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase Subunit M2 (Hrrm2) Length = 286 Back     alignment and structure
>pdb|2UW2|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase Subunit R2 Length = 332 Back     alignment and structure
>pdb|2O1Z|A Chain A, Plasmodium Vivax Ribonucleotide Reductase Subunit R2 (Pv086155) Length = 311 Back     alignment and structure
>pdb|3HF1|A Chain A, Crystal Structure Of Human P53r2 Length = 351 Back     alignment and structure
>pdb|2VUX|A Chain A, Human Ribonucleotide Reductase, Subunit M2 B Length = 326 Back     alignment and structure
>pdb|2P1I|A Chain A, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2 (Py03671) Length = 349 Back     alignment and structure
>pdb|4DJN|A Chain A, Crystal Structure Of A Ribonucleotide Reductase M2 B (Rnrr2) From Homo Sapiens At 2.20 A Resolution Length = 311 Back     alignment and structure
>pdb|1SMQ|A Chain A, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer From Saccharomyces Cerevisiae Length = 399 Back     alignment and structure
>pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer Length = 419 Back     alignment and structure
>pdb|1JK0|B Chain B, Ribonucleotide Reductase Y2y4 Heterodimer Length = 345 Back     alignment and structure
>pdb|2ANI|A Chain A, Crystal Structure Of The F127y Mutant Of Ribonucleotide Reductase R2 From Chlamydia Trachomatis Length = 346 Back     alignment and structure
>pdb|4D8F|A Chain A, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE 1 - High Mn) Length = 366 Back     alignment and structure
>pdb|1SYY|A Chain A, Crystal Structure Of The R2 Subunit Of Ribonucleotide Reductase From Chlamydia Trachomatis Length = 346 Back     alignment and structure
>pdb|2RCC|A Chain A, Crystal Structure Of Putative Class I Ribonucleotide Reductase (Np_241368.1) From Bacillus Halodurans At 1.90 A Resolution Length = 346 Back     alignment and structure
>pdb|3MJO|A Chain A, Small Subunit (R2f) Of Native Ribonucleotide Reductase From Corynebacterium Ammoniagenes Length = 296 Back     alignment and structure
>pdb|2R2F|A Chain A, Ribonucleotide Reductase R2f Protein From Salmonella Typhimurium (Oxidized) Length = 319 Back     alignment and structure
>pdb|1KGN|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe Containing, Form Length = 329 Back     alignment and structure
>pdb|2ALX|A Chain A, Ribonucleotide Reductase R2 From Escherichia Coli In Space Group P6(1)22 Length = 340 Back     alignment and structure
>pdb|1AV8|A Chain A, Ribonucleotide Reductase R2 Subunit From E. Coli Length = 340 Back     alignment and structure
>pdb|1PIY|A Chain A, Ribonucleotide Reductase R2 Soaked With Ferrous Ion At Neutral Ph Length = 375 Back     alignment and structure
>pdb|1MRR|A Chain A, Substitution Of Manganese For Iron In Ribonucleotide Reductase From Escherichia Coli. Spectroscopic And Crystallographic Characterization Length = 375 Back     alignment and structure
>pdb|1XIK|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Length = 375 Back     alignment and structure
>pdb|1PFR|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Length = 340 Back     alignment and structure
>pdb|1UZR|A Chain A, Crystal Structure Of The Class Ib Ribonucleotide Reductase R2f-2 Subunit From Mycobacterium Tuberculosis Length = 296 Back     alignment and structure
>pdb|2AV8|A Chain A, Y122f Mutant Of Ribonucleotide Reductase From Escherichia Coli Length = 340 Back     alignment and structure
>pdb|1PM2|A Chain A, Crystal Structure Of Manganese Substituted R2-d84e (d84e Mutant Of The R2 Subunit Of E. Coli Ribonucleotide Reductase) Length = 339 Back     alignment and structure
>pdb|1PIM|A Chain A, Dithionite Reduced E. Coli Ribonucleotide Reductase R2 Subunit, D84e Mutant Length = 375 Back     alignment and structure
>pdb|1YFD|A Chain A, Crystal Structure Of The Y122h Mutant Of Ribonucleotide Reductase R2 Protein From E. Coli Length = 375 Back     alignment and structure
>pdb|1RNR|A Chain A, Autocatalytic Generation Of Dopa In The Engineered Protein R2 F208y From Escherichia Coli Ribonucleotide Reductase And Crystal Structure Of The Dopa-208 Protein Length = 375 Back     alignment and structure
>pdb|2XOF|A Chain A, Ribonucleotide Reductase Y122no2y Modified R2 Subunit Of E. Coli Length = 375 Back     alignment and structure
>pdb|1BIQ|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Mutant E238a Length = 375 Back     alignment and structure
>pdb|3N37|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From Escherichia Coli Length = 319 Back     alignment and structure
>pdb|1RSR|A Chain A, Azide Complex Of The Diferrous F208a Mutant R2 Subunit Of Ribonucleotide Reductase Length = 375 Back     alignment and structure
>pdb|1PJ0|A Chain A, Ribonucleotide Reductase R2-D84eW48F MUTANT SOAKED WITH FERROUS IONS At Neutral Ph Length = 375 Back     alignment and structure
>pdb|1BIQ|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Mutant E238a Length = 375 Back     alignment and structure
>pdb|3EE4|A Chain A, R2-Like Ligand Binding MnFE OXIDASE FROM M. TUBERCULOSIS Length = 323 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query288
1h0o_A390 Ribonucleoside-diphosphate reductase; oxidoreducta 1e-149
2o1z_A311 Ribonucleotide reductase subunit R2; small subunit 1e-149
2p1i_A349 Ribonucleotide reductase, small chain; F222 twinni 1e-148
4a58_A324 Ribonucleoside-diphosphate reductase small chain; 1e-147
1jk0_A419 RNR Y2, ribonucleoside-diphosphate reductase small 1e-143
3olj_A286 Ribonucleoside-diphosphate reductase subunit M2; m 1e-142
1jk0_B345 RNR Y4, ribonucleoside-diphosphate reductase small 1e-141
1syy_A346 Ribonucleoside-diphosphate reductase beta chain; D 1e-137
3ee4_A323 Probable ribonucleoside-diphosphate reductase; man 1e-113
4dr0_A350 Ribonucleoside-diphosphate reductase subunit beta; 1e-110
3n37_A319 Ribonucleoside-diphosphate reductase 2 subunit BE; 3e-96
3dhz_A329 Ribonucleotide reductase subunit R2F; metal free, 2e-92
2rcc_A346 Ribonucleoside-diphosphate reductase subunit beta; 2e-92
3mjo_A296 Ribonucleotide reductase subunit R2F; Mn ribonucle 3e-91
1mxr_A375 Ribonucleotide reductase R2; radical protein, DI i 3e-89
>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus} SCOP: a.25.1.2 PDB: 1h0n_A 1w68_A 1w69_A 1xsm_A 2uw2_A 3hf1_A 2vux_A Length = 390 Back     alignment and structure
 Score =  422 bits (1087), Expect = e-149
 Identities = 179/284 (63%), Positives = 218/284 (76%), Gaps = 1/284 (0%)

Query: 5   KNETENEVNQREQGEQEQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVD 64
           +   ++   + +       + EP+L E  +RF +FPI Y  +W+MYKKA+ASFWTAEEVD
Sbjct: 50  RIFQDSAELESKAPTNPSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVD 109

Query: 65  LSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAM 124
           LS+D+QHWE L   E+HFISHVLAFFAASDGIV ENL  RF  ++Q+ EAR FYGFQIAM
Sbjct: 110 LSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAM 169

Query: 125 ENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSD-SFAERLVGF 183
           ENIHSEMYSLL++TYIKD KE+  LFNAIE +PCV +KA WAL WI   + ++ ER+V F
Sbjct: 170 ENIHSEMYSLLIDTYIKDPKEREYLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAF 229

Query: 184 ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQK 243
           A VEGIFFSGSF +IFWLKKRGLMPGLTFSNELISRDEGLHCDFACL++  L  +   Q+
Sbjct: 230 AAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPAEQR 289

Query: 244 VHHMVHEAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADRLL 287
           V  ++  AV IE +F+ EALP  LIGMN +LM QYI+FVADRL+
Sbjct: 290 VREIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLM 333
>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax} Length = 311 Back     alignment and structure
>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb PY03671, S genomics consortium, SGC, oxidoreductase; 2.70A {Plasmodium yoelii yoelii} Length = 349 Back     alignment and structure
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A Length = 419 Back     alignment and structure
>3olj_A Ribonucleoside-diphosphate reductase subunit M2; metal-binding, HRRM2, oxidoreductase; 2.10A {Homo sapiens} Length = 286 Back     alignment and structure
>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1sms_A Length = 345 Back     alignment and structure
>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune EVAS replication, oxidoreductase; 1.70A {Chlamydia trachomatis} SCOP: a.25.1.2 PDB: 4d8g_A 4d8f_A 2ani_A Length = 346 Back     alignment and structure
>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, C monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} Length = 323 Back     alignment and structure
>4dr0_A Ribonucleoside-diphosphate reductase subunit beta; ribonucleotide reductase, manganese, oxidoreductase; 1.90A {Bacillus subtilis} Length = 350 Back     alignment and structure
>3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide reductase, four-helix bundle, dimanganese CLU oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A 3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A Length = 319 Back     alignment and structure
>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A 1kgn_A Length = 329 Back     alignment and structure
>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125} Length = 346 Back     alignment and structure
>3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase, RNR, radical enzyme, split SIGN metallocofactor; 1.36A {Corynebacterium ammoniagenes} PDB: 1uzr_A* Length = 296 Back     alignment and structure
>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron, oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2 PDB: 1jpr_A 1jqc_A 1xik_A 3uus_E* 1yfd_A 1piy_A 1r65_A 2xof_A* 1biq_B* 1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A 1biq_A* 1rib_A 1mrr_A 1rnr_A* 1pj0_A 1pj1_A ... Length = 375 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query288
3olj_A286 Ribonucleoside-diphosphate reductase subunit M2; m 100.0
2o1z_A311 Ribonucleotide reductase subunit R2; small subunit 100.0
2p1i_A349 Ribonucleotide reductase, small chain; F222 twinni 100.0
1jk0_B345 RNR Y4, ribonucleoside-diphosphate reductase small 100.0
1h0o_A390 Ribonucleoside-diphosphate reductase; oxidoreducta 100.0
1jk0_A419 RNR Y2, ribonucleoside-diphosphate reductase small 100.0
4a58_A324 Ribonucleoside-diphosphate reductase small chain; 100.0
1syy_A346 Ribonucleoside-diphosphate reductase beta chain; D 100.0
2rcc_A346 Ribonucleoside-diphosphate reductase subunit beta; 100.0
1mxr_A375 Ribonucleotide reductase R2; radical protein, DI i 100.0
3mjo_A296 Ribonucleotide reductase subunit R2F; Mn ribonucle 100.0
3n37_A319 Ribonucleoside-diphosphate reductase 2 subunit BE; 100.0
4dr0_A350 Ribonucleoside-diphosphate reductase subunit beta; 100.0
3dhz_A329 Ribonucleotide reductase subunit R2F; metal free, 100.0
3ee4_A323 Probable ribonucleoside-diphosphate reductase; man 100.0
2inc_A 491 Toluene, O-xylene monooxygenase oxygenase subunit; 98.13
1mty_D 512 Methane monooxygenase hydroxylase; dinuclear iron 97.97
2uw1_A338 Desaturase, plastid delta4 multifunctional acyl-AC 97.84
2inc_B322 Toluene, O-xylene monooxygenase oxygenase subunit; 97.68
3ge3_A 500 Toluene-4-monooxygenase system protein A; DIIRON h 97.68
3ge3_B327 Toluene-4-monooxygenase system protein E; DIIRON h 97.46
1za0_A275 Possible acyl-[acyl-carrier protein] desaturase D 97.29
3pvt_A311 Phenylacetic acid degradation protein PAAA; protei 97.05
1mhy_B395 Methane monooxygenase hydroxylase; oxidoreductase, 96.93
3u52_A 511 Phenol hydroxylase component PHN; 4-helix bundle, 96.91
3u52_C333 Phenol hydroxylase component PHL; 4-helix bundle, 96.84
3chh_A336 P-aminobenzoate N-oxygenase; DI-iron oxygenase, ox 96.56
1mty_B384 Methane monooxygenase hydroxylase; dinuclear iron 96.5
3pf7_A 481 Benzoyl-COA oxygenase component B; DIIRON center, 96.18
2oc5_A244 Hypothetical protein; DUF3066 family protein, stru 95.13
1zpy_A95 Hypothetical protein NE0167; structural genomics, 93.69
1rcw_A231 CT610, CADD; iron, DI-iron, redox enzyme, metallo 92.88
3bjd_A332 Putative 3-oxoacyl-(acyl-carrier-protein) synthas; 90.95
3k6c_A95 Uncharacterized protein NE0167; structural genomic 85.77
3qhb_A179 Symerythrin, ORF180; four-helix bundle, carboxylat 83.83
1za0_A275 Possible acyl-[acyl-carrier protein] desaturase D 82.53
3dde_A239 TENA/THI-4 protein, domain of unknown function WI 80.63
>3olj_A Ribonucleoside-diphosphate reductase subunit M2; metal-binding, HRRM2, oxidoreductase; 2.10A {Homo sapiens} PDB: 4djn_A Back     alignment and structure
Probab=100.00  E-value=5.9e-75  Score=525.68  Aligned_cols=266  Identities=67%  Similarity=1.150  Sum_probs=258.6

Q ss_pred             cccccccccCCCcceecCcCchHHHHHHHHHhcCCCCCcccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 023028           23 EDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLA  102 (288)
Q Consensus        23 ~~~~~il~~~~~~~~~~pi~y~~~~~lykk~~~~fW~p~eid~s~D~~~w~~L~~~er~~~~~~l~~l~~~d~~v~~~l~  102 (288)
                      +++||||.+|++|++++|++|||+|++|+++.++||+|+|||+++|+.||++||+.||++++++|++|+.+|++|++++.
T Consensus         3 ~~~e~~l~~~~~r~~~~pikY~~~~~~ykk~~~~fW~peEI~ls~D~~dw~~L~~~Er~~~~~~l~~~~~~D~iv~~~l~   82 (286)
T 3olj_A            3 VEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLV   82 (286)
T ss_dssp             STTCTTTSCCTTTTCCCSCCCHHHHHHHHHHHHTCCCGGGSCCTTSHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccCccccCCCCCeeeeCCCchHHHHHHHHHHHcCCChHHcChhhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhcc-chHHHHHHH
Q 023028          103 ARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHS-SDSFAERLV  181 (288)
Q Consensus       103 ~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~-~~~~~~~lv  181 (288)
                      +.+.+.++.||+++|+++|+++|+||+++||+++++++.||++++++|+++.++|.+++|++|+.+++++ +++++++++
T Consensus        83 ~~~~~~v~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~e~~~~f~~~~~~p~l~~K~~~~~~~~~~~~~~~~~~lv  162 (286)
T 3olj_A           83 ERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVV  162 (286)
T ss_dssp             HTHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHTHHHHCGGGHHHHHHHHHHHHCSSSCHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCChhHHHHHHH
Confidence            8999999999999999999999999999999999999989999999999999999999999999999975 456899999


Q ss_pred             HHHHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 023028          182 GFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCE  261 (288)
Q Consensus       182 ~~~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~i~e~~~eave~E~~~~~~  261 (288)
                      +++++||++|||||+++++|+++|+|||++++|++|.|||++|+.|++.+++.+++++++++|++++++||++|++|+.+
T Consensus       163 a~~~lEgi~f~~~F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~~~~~~~v~~~~~eave~E~~~~~~  242 (286)
T 3olj_A          163 AFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVREIIINAVRIEQEFLTE  242 (286)
T ss_dssp             HHHHHHHTTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCCCCHHHHHHHHHHHHhhcCC
Q 023028          262 ALPCALIGMNSSLMSQYIKFVADRLLH  288 (288)
Q Consensus       262 ~~~~~~~Gl~~~~~~~yi~y~ad~~L~  288 (288)
                      ++|++++||+.+.+++||+|+||+||.
T Consensus       243 ~l~~~~~Gl~~~~~~~yi~y~An~~L~  269 (286)
T 3olj_A          243 ALPVKLIGMNCTLMKQYIEFVADRLML  269 (286)
T ss_dssp             TSCGGGGTCCHHHHHHHHHHHHHHHHH
T ss_pred             HcCCCcCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999973
>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax} Back     alignment and structure
>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb PY03671, S genomics consortium, SGC, oxidoreductase; 2.70A {Plasmodium yoelii yoelii} Back     alignment and structure
>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1sms_A Back     alignment and structure
>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus} SCOP: a.25.1.2 PDB: 1h0n_A 1w68_A 1w69_A 1xsm_A 2uw2_A 3hf1_A 2vux_A Back     alignment and structure
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A Back     alignment and structure
>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune EVAS replication, oxidoreductase; 1.70A {Chlamydia trachomatis} SCOP: a.25.1.2 PDB: 4d8g_A 4d8f_A 2ani_A Back     alignment and structure
>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125} Back     alignment and structure
>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron, oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2 PDB: 1jpr_A 1jqc_A 1xik_A 3uus_E* 1yfd_A 1piy_A 1r65_A 2xof_A* 1biq_B* 1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A 1biq_A* 1rib_A 1mrr_A 1rnr_A* 1pj0_A 1pj1_A ... Back     alignment and structure
>3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase, RNR, radical enzyme, split SIGN metallocofactor; 1.36A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1uzr_A* Back     alignment and structure
>3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide reductase, four-helix bundle, dimanganese CLU oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A 3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A Back     alignment and structure
>4dr0_A Ribonucleoside-diphosphate reductase subunit beta; ribonucleotide reductase, manganese, oxidoreductase; 1.90A {Bacillus subtilis} Back     alignment and structure
>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A 1kgn_A Back     alignment and structure
>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, C monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} PDB: 4ac8_A* Back     alignment and structure
>2inc_A Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: a.25.1.2 PDB: 2ind_A* 1t0q_A 1t0r_A 1t0s_A 3n1z_A* 3rnf_A* 3n20_A* 3rnc_A 3rn9_A* 3n1x_A 3rne_A 2rdb_A* 3n1y_A* 3rnb_A 3rng_A 3rna_A Back     alignment and structure
>1mty_D Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.25.1.2 PDB: 1mmo_D 1xvb_A 1fyz_A 1fz0_A 1fz2_A 1fz3_A 1fz4_A 1fz5_A 1fz6_A 1fz7_A 1fz8_A 1fz9_A 1fzh_A 1fzi_A 1xmf_A 1xmg_A 1xmh_A 1xu3_A 1xu5_A 1fz1_A ... Back     alignment and structure
>2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier desaturase; electron transfer, oxidoreductase, lipid synthesis, fatty AC biosynthesis; HET: GVM; 1.95A {Hedera helix} PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A 2xz0_A* 2xz1_A* 1afr_A 2j2f_A Back     alignment and structure
>2inc_B Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: a.25.1.2 PDB: 3n20_B* 1t0r_B 1t0s_B 1t0q_B* 3n1x_B 3n1y_B* 3n1z_B* 2rdb_B* 3rn9_B* 3rna_B 3rnb_B 3rnc_B 3rne_B 3rnf_B* 3rng_B 2ind_B* Back     alignment and structure
>3ge3_A Toluene-4-monooxygenase system protein A; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: a.25.1.2 PDB: 3ge8_A 3dhi_A* 3dhh_A* 3dhg_A* 3i5j_A 3i63_A 3q14_A 3q2a_A* 3q3m_A* 3q3n_A* 3q3o_A* 3rmk_A* 3ri7_A Back     alignment and structure
>3ge3_B Toluene-4-monooxygenase system protein E; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} PDB: 3ge8_B 3i5j_B 3i63_B 3dhi_B* 3dhh_B* 3dhg_B* 3q14_B 3q2a_B* 3q3m_B* 3q3n_B* 3q3o_B* 3rmk_B* 3ri7_B Back     alignment and structure
>1za0_A Possible acyl-[acyl-carrier protein] desaturase D (acyl-[ACP] desaturase) (stearoyl-ACP...; four-helix bundle, metal binding protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.25.1.2 Back     alignment and structure
>3pvt_A Phenylacetic acid degradation protein PAAA; protein-protein complex, ferritin-like fold, bacterial multi monooxygenase, structural genomics; HET: 3HC; 2.03A {Escherichia coli} PDB: 3pvr_A* 3pvy_A* 3pw1_A* 3pw8_C* 3pwq_C Back     alignment and structure
>1mhy_B Methane monooxygenase hydroxylase; oxidoreductase, NADP, one-carbon metabolism; 2.00A {Methylosinus trichosporium} SCOP: a.25.1.2 PDB: 1mhz_B Back     alignment and structure
>3u52_A Phenol hydroxylase component PHN; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_A 2inp_A Back     alignment and structure
>3u52_C Phenol hydroxylase component PHL; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_C* 2inp_C Back     alignment and structure
>3chh_A P-aminobenzoate N-oxygenase; DI-iron oxygenase, oxidoreductase; 2.00A {Streptomyces thioluteus} PDB: 3chi_A 3cht_A* 3chu_A 2jcd_A Back     alignment and structure
>1mty_B Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.25.1.2 PDB: 1xvb_C 1fyz_C 1fz0_C 1fz2_C 1fz3_C 1fz4_C 1fz5_C 1fz6_C 1fz7_C 1fz8_C 1fz9_C 1fzh_C 1fzi_C 1xu3_C 1xu5_C 1fz1_C 1xvc_C 1xvd_C 1xve_C 1xvf_C ... Back     alignment and structure
>3pf7_A Benzoyl-COA oxygenase component B; DIIRON center, epoxidase, benzoyl coenzyme A, oxidoreductase; 1.90A {Azoarcus evansii} PDB: 3per_A 3pm5_A* 3q1g_A Back     alignment and structure
>2oc5_A Hypothetical protein; DUF3066 family protein, structural genomics, joint center FO structural genomics, JCSG; HET: UNL; 1.68A {Prochlorococcus marinus} SCOP: a.25.1.6 Back     alignment and structure
>1zpy_A Hypothetical protein NE0167; structural genomics, MCSG, PSI, protein structure initiative; 2.20A {Nitrosomonas europaea atcc 19718} PDB: 3k6c_A Back     alignment and structure
>1rcw_A CT610, CADD; iron, DI-iron, redox enzyme, metallo enzyme, oxidoreductase,; 2.50A {Chlamydia trachomatis} SCOP: a.132.1.4 Back     alignment and structure
>3bjd_A Putative 3-oxoacyl-(acyl-carrier-protein) synthas; structural genomics, APC5632, 3-oxoacyl-(acyl-carrier-protei synthase, PSI-2; HET: MSE; 1.85A {Pseudomonas aeruginosa PAO1} Back     alignment and structure
>3k6c_A Uncharacterized protein NE0167; structural genomics, MCSG, unknown function protein, PSI, PR structure initiative; 2.20A {Nitrosomonas europaea} Back     alignment and structure
>3qhb_A Symerythrin, ORF180; four-helix bundle, carboxylate bridged-DIIRON, ferritin-like superfamily, metal transport; 1.20A {Cyanophora paradoxa} PDB: 3qhc_A 3sid_A Back     alignment and structure
>1za0_A Possible acyl-[acyl-carrier protein] desaturase D (acyl-[ACP] desaturase) (stearoyl-ACP...; four-helix bundle, metal binding protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.25.1.2 Back     alignment and structure
>3dde_A TENA/THI-4 protein, domain of unknown function WI oxygenase-like fold; structural genomics, joint center for structural genomics; HET: MSE PGE; 2.30A {Shewanella denitrificans OS217} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 288
d1jk0a_334 a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's 1e-85
d1w68a_281 a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse ( 2e-78
d1jk0b_285 a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's 9e-73
d1syya_317 a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamyd 2e-67
d1mxra_339 a.25.1.2 (A:) Ribonucleotide reductase R2 {Escheri 3e-63
d1r2fa_283 a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmone 2e-57
d3dhza1284 a.25.1.2 (A:14-297) Ribonucleotide reductase R2 {C 4e-57
>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y2 [TaxId: 4932]} Length = 334 Back     information, alignment and structure

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: Ribonucleotide reductase R2
species: Baker's yeast (Saccharomyces cerevisiae), Y2 [TaxId: 4932]

 Score =  257 bits (658), Expect = 1e-85
 Identities = 165/269 (61%), Positives = 211/269 (78%), Gaps = 2/269 (0%)

Query: 21  EQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLL-DSE 79
           E E +EP+L E  +R  +FPI+Y ++W+ YK+A+ASFWTAEE+DLS+D+  W   + ++E
Sbjct: 46  EMEKEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNNRMNENE 105

Query: 80  KHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETY 139
           + FIS VLAFFAASDGIV ENL   F  ++QIPEA++FYGFQI +ENIHSE YSLL++TY
Sbjct: 106 RFFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTY 165

Query: 140 IKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDS-FAERLVGFACVEGIFFSGSFCAI 198
           IKD KE   LFNAI  IP + +KA+WAL WI  +D+ F ERLV FA +EG+FFSGSF +I
Sbjct: 166 IKDPKESEFLFNAIHTIPEIGEKAEWALRWIQDADALFGERLVAFASIEGVFFSGSFASI 225

Query: 199 FWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQF 258
           FWLKKRG+MPGLTFSNELI RDEGLH DFACLL++ L+ +     V  +V EAVEIE ++
Sbjct: 226 FWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPAIVEKIVTEAVEIEQRY 285

Query: 259 VCEALPCALIGMNSSLMSQYIKFVADRLL 287
             +ALP AL+GMN+ LM+QY++FVADRLL
Sbjct: 286 FLDALPVALLGMNADLMNQYVEFVADRLL 314
>d1w68a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 Back     information, alignment and structure
>d1jk0b_ a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y4 [TaxId: 4932]} Length = 285 Back     information, alignment and structure
>d1syya_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia trachomatis [TaxId: 813]} Length = 317 Back     information, alignment and structure
>d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia coli [TaxId: 562]} Length = 339 Back     information, alignment and structure
>d1r2fa_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmonella typhimurium [TaxId: 90371]} Length = 283 Back     information, alignment and structure
>d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2 {Corynebacterium ammoniagenes [TaxId: 1697]} Length = 284 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query288
d1jk0a_334 Ribonucleotide reductase R2 {Baker's yeast (Saccha 100.0
d1jk0b_285 Ribonucleotide reductase R2 {Baker's yeast (Saccha 100.0
d1w68a_281 Ribonucleotide reductase R2 {Mouse (Mus musculus) 100.0
d1syya_317 Ribonucleotide reductase R2 {Chlamydia trachomatis 100.0
d1mxra_339 Ribonucleotide reductase R2 {Escherichia coli [Tax 100.0
d3dhza1284 Ribonucleotide reductase R2 {Corynebacterium ammon 100.0
d1r2fa_283 Ribonucleotide reductase R2 {Salmonella typhimuriu 100.0
d1mtyd_ 512 Methane monooxygenase hydrolase alpha subunit {Met 98.84
d2inca1 491 Toluene, o-xylene monooxygenase oxygenase subunit 98.83
d2incb1322 Toluene, o-xylene monooxygenase oxygenase subunit 97.41
d1za0a1267 Possible acyl-[acyl-carrier protein] desaturase {M 97.34
d1mtyb_384 Methane monooxygenase hydrolase beta subunit {Meth 97.14
d1mhyb_383 Methane monooxygenase hydrolase beta subunit {Meth 97.09
d1afra_345 delta 9-stearoyl-acyl carrier protein desaturase { 96.76
d1rcwa_213 Hypothetical protein CT610 {Chlamydia trachomatis 96.4
d2fzfa1158 Hypothetical protein PF1190 {Archaeon Pyrococcus f 96.09
d2oc5a1222 Hypothetical protein PMT1231 {Prochlorococcus mari 95.6
d1udda_215 Hypothetical transcriptional regulator PH1161 {Pyr 94.84
d1vjxa_149 Hypothetical protein TM1526 {Thermotoga maritima [ 90.19
d1j30a_141 Hypothetical rubrerythrin {Archaeon Sulfolobus tok 90.08
d1lkoa1146 Rubrerythrin, N-terminal domain {Desulfovibrio vul 88.89
d1zpya191 Hypothetical protein NE0167 {Nitrosomonas europaea 87.5
d1z72a1217 Putative transcriptional regulator SP0716 (SPr0628 83.61
>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y2 [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: Ribonucleotide reductase R2
species: Baker's yeast (Saccharomyces cerevisiae), Y2 [TaxId: 4932]

Probab=100.00  E-value=1.4e-72  Score=518.25  Aligned_cols=276  Identities=60%  Similarity=1.055  Sum_probs=265.5

Q ss_pred             hhhhhccccccccccccccCCCcceecCcCchHHHHHHHHHhcCCCCCcccCccccHHHHh-cCCHHHHHHHHHHHHHHH
Q 023028           13 NQREQGEQEQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWE-RLLDSEKHFISHVLAFFA   91 (288)
Q Consensus        13 ~~~~~~~~~~~~~~~il~~~~~~~~~~pi~y~~~~~lykk~~~~fW~p~eid~s~D~~~w~-~L~~~er~~~~~~l~~l~   91 (288)
                      .-.|+.+++.+++||||.+|++||+++||||||+|++|+++.++||+|+|||+++|+.||+ +||+.||+++++++++|+
T Consensus        38 ~~~~~~~~~~~~~e~~l~~~~~r~~~~PikY~~~~~~Ykk~~~~fW~peEIdls~D~~dw~~~Lt~~Er~~i~~il~ffa  117 (334)
T d1jk0a_          38 QVHRHKLKEMEKEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNNRMNENERFFISRVLAFFA  117 (334)
T ss_dssp             HHHHHHHHHHGGGCGGGSCCTTCCSCCSCSCHHHHHHHHHHHTTCCCGGGCCCTTHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             hhhHHHhHhhhcCCcccCCCCCceeEeCCcCHHHHHHHHHHHHcCCCchhccCcCCHHHHhhcCCHHHHHHHHHHHHHHH
Confidence            3467788899999999999999999999999999999999999999999999999999996 699999999999999999


Q ss_pred             HHHHHHHhhhHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhCHHHHHHHHHHHHHhc
Q 023028           92 ASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIH  171 (288)
Q Consensus        92 ~~d~~v~~~l~~~l~~~~~~~E~~~~~~~Q~~~E~iH~e~Ys~il~~~~~~~~e~~~~~~~~~~~p~l~~k~~~i~~~~~  171 (288)
                      .+|++|++++.+.+.+.++.||+++|+++|+++|+||+++||+++++++.|+.+++.+|+++.+.|.+++|++|+.++++
T Consensus       118 ~~D~~v~~~l~~~~~~~v~~pE~~~~~~~q~~~E~IHsesYS~ii~tl~~d~~e~~~lf~~~~~~~~i~~k~~~~~~~~~  197 (334)
T d1jk0a_         118 ASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIGEKAEWALRWIQ  197 (334)
T ss_dssp             TTSSHHHHHHCCCCCTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             hhhHHHHhHHHHhhhHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHCHHHHHHHHHHHHhhh
Confidence            99999999998789999999999999999999999999999999999999999999999999999999999999999996


Q ss_pred             cc-hHHHHHHHHHHHhhhhHhHhHHHHHHHHHHcCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 023028          172 SS-DSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHE  250 (288)
Q Consensus       172 ~~-~~~~~~lv~~~~lEgi~f~~~F~~~~~l~~~~~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~i~e~~~e  250 (288)
                      +. ..+.+++++++++||++|||||+++++|+++|+|||+|++|++|+|||++|+.|++.+++.++.+++++.+++++++
T Consensus       198 ~~~~~~~~~lva~~~lEgi~F~ssFa~~~~l~~~g~m~G~~~~i~~I~RDE~lH~~f~~~l~~~l~~~~~~~~i~~i~~e  277 (334)
T d1jk0a_         198 DADALFGERLVAFASIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPAIVEKIVTE  277 (334)
T ss_dssp             SSSCCHHHHHHHHHHHHHTTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhHHhhhhhHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            54 45889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhcCC
Q 023028          251 AVEIETQFVCEALPCALIGMNSSLMSQYIKFVADRLLH  288 (288)
Q Consensus       251 ave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~ad~~L~  288 (288)
                      ||++|.+|+.+++|.+++|||.+.+++||+|+|||||.
T Consensus       278 AvelE~~~~~~~~~~~~~Gln~~~~~~YI~y~Anr~L~  315 (334)
T d1jk0a_         278 AVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLV  315 (334)
T ss_dssp             HHHHHHHHHHTTSCGGGGTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCcCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999973
>d1jk0b_ a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y4 [TaxId: 4932]} Back     information, alignment and structure
>d1w68a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1syya_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia trachomatis [TaxId: 813]} Back     information, alignment and structure
>d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2 {Corynebacterium ammoniagenes [TaxId: 1697]} Back     information, alignment and structure
>d1r2fa_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1mtyd_ a.25.1.2 (D:) Methane monooxygenase hydrolase alpha subunit {Methylococcus capsulatus [TaxId: 414]} Back     information, alignment and structure
>d2inca1 a.25.1.2 (A:2-492) Toluene, o-xylene monooxygenase oxygenase subunit TouA {Pseudomonas stutzeri [TaxId: 316]} Back     information, alignment and structure
>d2incb1 a.25.1.2 (B:8-329) Toluene, o-xylene monooxygenase oxygenase subunit TouE {Pseudomonas stutzeri [TaxId: 316]} Back     information, alignment and structure
>d1za0a1 a.25.1.2 (A:8-274) Possible acyl-[acyl-carrier protein] desaturase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1mtyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit {Methylococcus capsulatus [TaxId: 414]} Back     information, alignment and structure
>d1mhyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit {Methylosinus trichosporium [TaxId: 426]} Back     information, alignment and structure
>d1afra_ a.25.1.2 (A:) delta 9-stearoyl-acyl carrier protein desaturase {Castor bean (Ricinus communis) [TaxId: 3988]} Back     information, alignment and structure
>d1rcwa_ a.132.1.4 (A:) Hypothetical protein CT610 {Chlamydia trachomatis [TaxId: 813]} Back     information, alignment and structure
>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2oc5a1 a.25.1.6 (A:20-241) Hypothetical protein PMT1231 {Prochlorococcus marinus [TaxId: 1219]} Back     information, alignment and structure
>d1udda_ a.132.1.3 (A:) Hypothetical transcriptional regulator PH1161 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1j30a_ a.25.1.1 (A:) Hypothetical rubrerythrin {Archaeon Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1lkoa1 a.25.1.1 (A:2-147) Rubrerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d1zpya1 a.25.1.5 (A:4-94) Hypothetical protein NE0167 {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d1z72a1 a.132.1.3 (A:4-220) Putative transcriptional regulator SP0716 (SPr0628) {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure