Citrus Sinensis ID: 023029

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
MAHQEEIKQFQTLMEDLDDSLKETFKKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYASLPHFCRKEGSGSSRHIGNGTTENCFSLDHAFHQRLYNYIKQQAVLTESVVPIRQGSFHVDFPEPDPEGAKITKKIESEFHRIGDKNGLINSLNGLKVDG
ccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccccccccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHcccccccEEEEEEccccccccccHHHHHHHHHHHHHcccccccccEEEEEcccccHHHHHHHcccccHHHcccEEEEccccHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccEEcccEEEEcccccEEccccccccccEEEEEEcccccccccccccccccccccccc
cHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHcccccccccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHccccccEEEEEEccccccccccHHHHHHHHHHcccccccccccEEEEEEcccHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHccHHHccccccccccccccccccccccccHHccccccHHHHHHHHHHHHHcccccccccccEEcccccccHHHHHHHHHHHHHHHHHcccccccccccccEEcc
MAHQEEIKQFQTLMEDLDDSLKEtfkkpilpaeLYRAVrdsqlvgvsgyskeglpVIAVGVGLSTHDKASVNYYVQSHIQMneyrdrvvlpsaskkhgryigtSLKVLDMTGLKLSALNQIKLMTVITtiddlnypektetyyivnapYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDyaslphfcrkegsgssrhigngttencfslDHAFHQRLYNYIKQQAVLtesvvpirqgsfhvdfpepdpegaKITKKIESEFhrigdknglinslnglkvdg
MAHQEEIKQFQTLMEDLDDSLKETFKKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLpsaskkhgryigtslkvldMTGLKLSALNQIKLMTVIttiddlnypEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQvlqgngrdeLLKIMDYASLPHFCRKEGSGSSRHIGNGTTENCFSLDHAFHQRLYNYIKQQAVLTESVVPIRQGSfhvdfpepdpEGAKITKKIESefhrigdknglinslnglkvdg
MAHQEEIKQFQTLMEDLDDSLKETFKKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYASLPHFCRKEGSGSSRHIGNGTTENCFSLDHAFHQRLYNYIKQQAVLTESVVPIRQGSFHVDFPEPDPEGAKITKKIESEFHRIGDKNGLINSLNGLKVDG
***********************TFKKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYASLPHFCRK*******HIGNGTTENCFSLDHAFHQRLYNYIKQQAVLTESVVPIRQGSFHVDF**************************************
MAHQEEIKQFQTLMEDLDDSLKETFKKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYASLPHFCRKEGSGSSRHIGNGTTENCFSLDHAFHQRLYNY************************EPDPEGAKITKKIESEFH************N******
MAHQEEIKQFQTLMEDLDDSLKETFKKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYASLPHFCRKEGSGSSRHIGNGTTENCFSLDHAFHQRLYNYIKQQAVLTESVVPIRQGSFHVDFPEPDPEGAKITKKIESEFHRIGDKNGLINSLNGLKVDG
*****EIKQFQTLMEDLDDSLKETFKKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYASLPHFCRKEGSGSSRHIGNGTTENCFSLDHAFHQRLYNYIKQQAVLTESVVPIRQGSFHVDFPEPDPEGAKITKKIESEFHRIGDKNGLINSLN***V**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MAHQEEIKQFQTLMEDLDDSLKETFKKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYASLPHFCRKEGSGSSRHIGNGTTENCFSLDHAFHQRLYNYIKQQAVLTESVVPIRQGSFHVDFPEPDPEGAKITKKIESEFHRIGDKNGLINSLNGLKVDG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query288 2.2.26 [Sep-21-2011]
P46250301 SEC14 cytosolic factor OS N/A no 0.472 0.451 0.324 4e-11
P33324310 CRAL-TRIO domain-containi yes no 0.347 0.322 0.352 3e-10
Q8R0F9403 SEC14-like protein 4 OS=M yes no 0.5 0.357 0.316 7e-10
Q75DK1308 SEC14 cytosolic factor OS yes no 0.364 0.340 0.330 8e-10
P24859301 SEC14 cytosolic factor OS yes no 0.364 0.348 0.320 8e-10
Q9UDX3406 SEC14-like protein 4 OS=H no no 0.493 0.349 0.312 2e-09
P45816 492 SEC14 cytosolic factor OS yes no 0.524 0.306 0.319 2e-09
Q10137286 Sec14 cytosolic factor OS yes no 0.354 0.356 0.291 2e-09
P24280304 SEC14 cytosolic factor OS no no 0.354 0.335 0.320 5e-09
P53989302 SEC14 cytosolic factor OS no no 0.354 0.337 0.320 6e-09
>sp|P46250|SEC14_CANAL SEC14 cytosolic factor OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SEC14 PE=2 SV=1 Back     alignment and function desciption
 Score = 68.9 bits (167), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 79/151 (52%), Gaps = 15/151 (9%)

Query: 51  KEGLPVIAVGVG---------LSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYI 101
           K+G PV    +G         ++T ++   N  V  +  M +YR    LP+ S+K G  +
Sbjct: 116 KDGRPVYFEELGKVDLVKMLKITTQERMLKNL-VWEYEAMCQYR----LPACSRKAGYLV 170

Query: 102 GTSLKVLDMTGLKL-SALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKP 160
            TS  VLD++G+ + SA N I  +   + I    YPE+   +Y++NAP+ FS  +K+ KP
Sbjct: 171 ETSCTVLDLSGISVTSAYNVIGYVREASKIGQDYYPERMGKFYLINAPFGFSTAFKLFKP 230

Query: 161 LLQERTRRKMQVLQGNGRDELLKIMDYASLP 191
            L   T  K+ +L  + + ELLK +   +LP
Sbjct: 231 FLDPVTVSKIHILGYSYKKELLKQIPPQNLP 261
Required for transport of secretory proteins from the Golgi complex. Catalyzes the transfer of phosphatidylinositol and phosphatidylcholine between membranes in vitro.
Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)
>sp|P33324|YKJ1_YEAST CRAL-TRIO domain-containing protein YKL091C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YKL091C PE=1 SV=2 Back     alignment and function description
>sp|Q8R0F9|S14L4_MOUSE SEC14-like protein 4 OS=Mus musculus GN=Sec14l4 PE=2 SV=1 Back     alignment and function description
>sp|Q75DK1|SEC14_ASHGO SEC14 cytosolic factor OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SEC14 PE=3 SV=2 Back     alignment and function description
>sp|P24859|SEC14_KLULA SEC14 cytosolic factor OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SEC14 PE=3 SV=2 Back     alignment and function description
>sp|Q9UDX3|S14L4_HUMAN SEC14-like protein 4 OS=Homo sapiens GN=SEC14L4 PE=2 SV=1 Back     alignment and function description
>sp|P45816|SEC14_YARLI SEC14 cytosolic factor OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SEC14 PE=3 SV=2 Back     alignment and function description
>sp|Q10137|SEC14_SCHPO Sec14 cytosolic factor OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec14 PE=4 SV=1 Back     alignment and function description
>sp|P24280|SEC14_YEAST SEC14 cytosolic factor OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEC14 PE=1 SV=3 Back     alignment and function description
>sp|P53989|SEC14_CANGA SEC14 cytosolic factor OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SEC14 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query288
225461961338 PREDICTED: SEC14-like protein 5 [Vitis v 0.996 0.849 0.676 1e-127
449461049337 PREDICTED: SEC14 cytosolic factor-like [ 1.0 0.854 0.661 1e-125
147822313338 hypothetical protein VITISV_000011 [Viti 0.940 0.801 0.786 1e-123
224061236337 predicted protein [Populus trichocarpa] 0.937 0.801 0.746 1e-120
356527167338 PREDICTED: SEC14 cytosolic factor-like [ 0.993 0.846 0.629 1e-119
356566393 410 PREDICTED: SEC14 cytosolic factor-like [ 0.979 0.687 0.628 1e-118
356524376288 PREDICTED: SEC14 cytosolic factor-like [ 0.940 0.940 0.714 1e-117
255579158336 SEC14 cytosolic factor, putative [Ricinu 0.937 0.803 0.726 1e-117
297847948325 SEC14 cytosolic factor [Arabidopsis lyra 0.947 0.84 0.630 1e-116
224086324345 predicted protein [Populus trichocarpa] 0.937 0.782 0.734 1e-116
>gi|225461961|ref|XP_002270197.1| PREDICTED: SEC14-like protein 5 [Vitis vinifera] gi|296089941|emb|CBI39760.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 226/334 (67%), Positives = 257/334 (76%), Gaps = 47/334 (14%)

Query: 1   MAHQEEIKQFQTLMEDLDDSLKETFK---------------------------------- 26
           + +QE +KQ Q L+++++++LK +F+                                  
Sbjct: 3   IVNQEAVKQLQLLLDEVEETLKNSFENVHQGYVRETLARFLKARDGNVPKAHKMLVDCLN 62

Query: 27  ------------KPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYY 74
                       KPILP  LYRAVRDSQL G+SGY+KEGLPVIAVGVG ST DKASV+YY
Sbjct: 63  WRIQNEIDNILTKPILPPNLYRAVRDSQLTGLSGYTKEGLPVIAVGVGQSTFDKASVHYY 122

Query: 75  VQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLN 134
           VQSHIQMNEYRDRVVLP+A+KKHGRYIGT +KVLDMTGLKLSALNQIKL+TVI+TIDDLN
Sbjct: 123 VQSHIQMNEYRDRVVLPAATKKHGRYIGTCVKVLDMTGLKLSALNQIKLLTVISTIDDLN 182

Query: 135 YPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYASLPHFC 194
           YPEKT+TYYIVN PYIFSACWKVVKPLLQERTRRK+QVLQG GRDELLKIMDYASLPHFC
Sbjct: 183 YPEKTDTYYIVNVPYIFSACWKVVKPLLQERTRRKVQVLQGCGRDELLKIMDYASLPHFC 242

Query: 195 RKEGSGSSRHIGNGTTENCFSLDHAFHQRLYNYIKQQAVLTESVVPIRQGSFHVDFPEPD 254
           R+EGSGSS H  NGTT+NCF LDH FHQ +YNY+ QQA L ESV P +QGSFHV FPEPD
Sbjct: 243 RREGSGSSHHSENGTTDNCFCLDHVFHQHVYNYVNQQAALVESVGPWKQGSFHVAFPEPD 302

Query: 255 PEGAKITKKIESEFHRIGD-KNGLINSLNGLKVD 287
           PEG KI K IESEFH+IGD KNGL NS++ LKV+
Sbjct: 303 PEGKKIAKTIESEFHKIGDHKNGLSNSMSNLKVN 336

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449461049|ref|XP_004148256.1| PREDICTED: SEC14 cytosolic factor-like [Cucumis sativus] gi|449523143|ref|XP_004168584.1| PREDICTED: SEC14 cytosolic factor-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147822313|emb|CAN64059.1| hypothetical protein VITISV_000011 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224061236|ref|XP_002300384.1| predicted protein [Populus trichocarpa] gi|222847642|gb|EEE85189.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356527167|ref|XP_003532184.1| PREDICTED: SEC14 cytosolic factor-like [Glycine max] Back     alignment and taxonomy information
>gi|356566393|ref|XP_003551416.1| PREDICTED: SEC14 cytosolic factor-like [Glycine max] Back     alignment and taxonomy information
>gi|356524376|ref|XP_003530805.1| PREDICTED: SEC14 cytosolic factor-like [Glycine max] Back     alignment and taxonomy information
>gi|255579158|ref|XP_002530426.1| SEC14 cytosolic factor, putative [Ricinus communis] gi|223530034|gb|EEF31957.1| SEC14 cytosolic factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297847948|ref|XP_002891855.1| SEC14 cytosolic factor [Arabidopsis lyrata subsp. lyrata] gi|297337697|gb|EFH68114.1| SEC14 cytosolic factor [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224086324|ref|XP_002307849.1| predicted protein [Populus trichocarpa] gi|222853825|gb|EEE91372.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query288
TAIR|locus:2012040325 AT1G55840 "AT1G55840" [Arabido 0.923 0.818 0.718 6.3e-110
TAIR|locus:2160892341 AT5G47730 "AT5G47730" [Arabido 0.923 0.780 0.672 1.8e-99
TAIR|locus:2115265 543 SFH12 "AT4G36490" [Arabidopsis 0.75 0.397 0.287 1.8e-12
TAIR|locus:2136303 554 SEC14 "SECRETION 14" [Arabidop 0.517 0.268 0.329 2.6e-12
TAIR|locus:2139564 554 COW1 "CAN OF WORMS1" [Arabidop 0.569 0.296 0.298 3.4e-12
TAIR|locus:2053114 558 AT2G18180 "AT2G18180" [Arabido 0.517 0.267 0.316 2.6e-11
TAIR|locus:2049319 548 SFH3 "SEC14-like 3" [Arabidops 0.517 0.271 0.309 3.3e-11
TAIR|locus:2042634 547 AT2G16380 [Arabidopsis thalian 0.517 0.272 0.290 6.9e-11
TAIR|locus:2087293 579 AT3G24840 [Arabidopsis thalian 0.836 0.416 0.255 1.1e-10
CGD|CAL0003685301 SEC14 [Candida albicans (taxid 0.593 0.568 0.292 1.1e-10
TAIR|locus:2012040 AT1G55840 "AT1G55840" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1030 (367.6 bits), Expect = 6.3e-110, Sum P(2) = 6.3e-110
 Identities = 194/270 (71%), Positives = 229/270 (84%)

Query:     8 KQFQTLMEDLD----DSLKETFKKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGL 63
             K  + L+E L+    + + +   KPI+P +LYR +RD+QLVGVSGYSKEGLPVIA+GVGL
Sbjct:    52 KAHKMLLECLEWRTQNEIDKILTKPIVPVDLYRGIRDTQLVGVSGYSKEGLPVIAIGVGL 111

Query:    64 STHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKL 123
             ST+DKASV+YYVQSHIQMNEYRDRVVLPSASKK GR I T LK+LDM+GLKLSAL+QIKL
Sbjct:   112 STYDKASVHYYVQSHIQMNEYRDRVVLPSASKKQGRPICTCLKILDMSGLKLSALSQIKL 171

Query:   124 MTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLK 183
             MT ITTIDDLNYPEKTETYY+VN PYIFSACWK +KPLLQERT++K+QVL+G G+DELLK
Sbjct:   172 MTAITTIDDLNYPEKTETYYVVNVPYIFSACWKTIKPLLQERTKKKIQVLKGCGKDELLK 231

Query:   184 IMDYASLPHFCRKEGSGSSRHIGNGTTENCFSLDHAFHQRLYNYIKQQAVLTESVVPIRQ 243
             IMDY SLPHFCR+EGSGS RHI NGT +NCFSLDH+FHQ LY+Y+KQQA++  S  PIR 
Sbjct:   232 IMDYESLPHFCRREGSGSGRHISNGTVDNCFSLDHSFHQDLYDYVKQQALVKGSGAPIRH 291

Query:   244 GSFHVDFPEPDPEGAKITKKIESEFHRIGD 273
             GS HV FPEPD EG KI   +E+EF ++G+
Sbjct:   292 GSVHVKFPEPDTEGNKIFDTLENEFQKLGN 321
GO:0005215 "transporter activity" evidence=ISS
GO:0005794 "Golgi apparatus" evidence=ISM
GO:0006810 "transport" evidence=ISS
TAIR|locus:2160892 AT5G47730 "AT5G47730" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2115265 SFH12 "AT4G36490" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2136303 SEC14 "SECRETION 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2139564 COW1 "CAN OF WORMS1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2053114 AT2G18180 "AT2G18180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2049319 SFH3 "SEC14-like 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042634 AT2G16380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087293 AT3G24840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
CGD|CAL0003685 SEC14 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00033401001
SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (323 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query288
smart00516158 smart00516, SEC14, Domain in homologues of a S 1e-23
cd00170157 cd00170, SEC14, Sec14p-like lipid-binding domain 2e-22
pfam00650152 pfam00650, CRAL_TRIO, CRAL/TRIO domain 8e-14
>gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S Back     alignment and domain information 
 Score = 93.9 bits (234), Expect = 1e-23
 Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 7/152 (4%)

Query: 43  LVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIG 102
           + G  GY K+G PV+    G       ++   ++  + + E   +       +K    I 
Sbjct: 9   IPGGRGYDKDGRPVLIERAGRFDLKSVTLEELLRYLVYVLEKILQ------EEKKTGGIE 62

Query: 103 TSLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLL 162
               + D+ GL +S    + ++  I  I   +YPE+    YI+N P+ F   WK++KP L
Sbjct: 63  GFTVIFDLKGLSMSNP-DLSVLRKILKILQDHYPERLGKVYIINPPWFFRVLWKIIKPFL 121

Query: 163 QERTRRKMQVLQGNGRDELLKIMDYASLPHFC 194
            E+TR K++ +  + ++ELL+ +D   LP   
Sbjct: 122 DEKTREKIRFVGNDSKEELLEYIDKEQLPEEL 153

cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits. Length = 158
>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain Back     alignment and domain information
>gnl|CDD|216042 pfam00650, CRAL_TRIO, CRAL/TRIO domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 288
PF00650159 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 T 100.0
KOG1471317 consensus Phosphatidylinositol transfer protein SE 99.97
smart00516158 SEC14 Domain in homologues of a S. cerevisiae phos 99.97
KOG1470324 consensus Phosphatidylinositol transfer protein PD 99.97
cd00170157 SEC14 Sec14p-like lipid-binding domain. Found in s 99.94
PF13716149 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q 99.53
KOG4406 467 consensus CDC42 Rho GTPase-activating protein [Sig 98.46
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle Back     alignment and domain information 
Probab=100.00  E-value=1.1e-32  Score=229.82  Aligned_cols=155  Identities=28%  Similarity=0.476  Sum_probs=127.9

Q ss_pred             HHHhcCceeEeccCCCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHhhhcchhhhhhcCCccccEEEEEeCCCCCcC
Q 023029           37 AVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLS  116 (288)
Q Consensus        37 ~lr~~~~~~~~G~Dk~GrPV~i~~~g~~d~~~~~~~~~lk~~i~~~E~~~~~~~~~~s~~~g~~i~~~v~IvDl~Gls~~  116 (288)
                      .++++++.+++|+|++||||+++++|++|..+.+.++++++.++++|..++.. ++     +.+++++++|+|++|++++
T Consensus         2 ~~~~~~~~~~~g~D~~gr~v~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~-~~-----~~~~~~~~~iiD~~g~~~~   75 (159)
T PF00650_consen    2 EILKSGPFYLHGRDKDGRPVIYIRLGRFDPKKFSPEDVIRFFVYLLERMLKRM-PE-----GGQVEGIVVIIDLSGFSLS   75 (159)
T ss_dssp             HHHTTSCEEEEEE-TTS-EEEEEEGTT--HHTS-HHHHHHHHHHHHHHHHHTH-HH-----TSHHH-EEEEEE-TT--HH
T ss_pred             HHHCCeeEEECCCCCCcCEEEEEEcccCCCCcCCHHHHHHHHHHHHHHHHhhh-cc-----cccceeEEEEEeCCCceEe
Confidence            46678889999999999999999999999988889999999999999987532 11     3567899999999999999


Q ss_pred             CCCh--HHHHHHHHHhhhccCccccceEEEEcCChhHHHHHHHHhcccchhhhcceEEeCC-CCHhHHHhcCCCCCcccc
Q 023029          117 ALNQ--IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQG-NGRDELLKIMDYASLPHF  193 (288)
Q Consensus       117 ~l~~--~~~~~~i~~i~~~~YPerl~~i~iVNaP~~f~~~w~lvkpfL~e~Tr~KI~~~~~-~~~~~L~k~Id~~~LP~~  193 (288)
                      ++..  +++++.++++++++||||++++||||+|++|+++|++++|||+++|++||+++++ ++.++|.++||+++||.+
T Consensus        76 ~~~~~~~~~~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~~l~~~i~~~~lP~~  155 (159)
T PF00650_consen   76 NFDWWPISFLKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREKIVFHSGSDWKAKLKEYIDPEQLPVE  155 (159)
T ss_dssp             HHHCHHHHHHHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCTEEEECTTCHCHHHCCCSTGGGSBGG
T ss_pred             ccccchhhhhhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhhheeEEEECCcccHHHHHhhCCHhHCchh
Confidence            8753  6889999999999999999999999999999999999999999999999999975 455799999999999999


Q ss_pred             cccCCCCc
Q 023029          194 CRKEGSGS  201 (288)
Q Consensus       194 yGGe~GGt  201 (288)
                      |    ||+
T Consensus       156 ~----GG~  159 (159)
T PF00650_consen  156 Y----GGT  159 (159)
T ss_dssp             G----TSS
T ss_pred             c----CCC
Confidence            9    664

Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>smart00516 SEC14 Domain in homologues of a S Back     alignment and domain information
>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>cd00170 SEC14 Sec14p-like lipid-binding domain Back     alignment and domain information
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A Back     alignment and domain information
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query288
3b74_A320 Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Co 2e-11
3q8g_A320 Resurrection Of A Functional Phosphatidylinositol T 2e-11
1aua_A296 Phosphatidylinositol Transfer Protein Sec14p From S 3e-10
1olm_A403 Supernatant Protein Factor In Complex With Rrr-Alph 6e-08
1olm_E403 Supernatant Protein Factor In Complex With Rrr-Alph 6e-08
1o6u_A403 The Crystal Structure Of Human Supernatant Protein 1e-07
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex With Phosphatidylethanolamine Length = 320 Back     alignment and structure 
Iteration: 1

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 63/105 (60%), Gaps = 5/105 (4%)
Query: 90  LPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLN---YPEKTETYYIVN 146
           +P+ S++ G  I TS  VLD+ G+ LS  N   +++ I  + D++   YPE+   +YI++
Sbjct: 171 VPACSRRAGYLIETSCTVLDLKGISLS--NAYHVLSYIKDVADISQNYYPERMGKFYIIH 228
Query: 147 APYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYASLP 191
           +P+ FS  +K+VKP L   T  K+ +L  + + ELLK +   +LP
Sbjct: 229 SPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIENLP 273
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer Protein From A Pseudo-Sec14 Scaffold By Directed Evolution Length = 320 Back     alignment and structure
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From Saccharomyces Cerevisiae Length = 296 Back     alignment and structure
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized Vitamin E And Cholesterol Biosynthesis Length = 403 Back     alignment and structure
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized Vitamin E And Cholesterol Biosynthesis Length = 403 Back     alignment and structure
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor Length = 403 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query288
1aua_A296 Phosphatidylinositol transfer protein SEC14P; phos 5e-44
1olm_A403 SEC14-like protein 2; lipid-binding protein, chole 5e-42
3q8g_A320 CRAL-TRIO domain-containing protein YKL091C; strin 6e-42
3hx3_A316 Retinaldehyde-binding protein 1; lipid transfer pr 8e-19
1r5l_A262 Alpha-TTP, protein (alpha-tocopherol transfer prot 7e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Length = 296 Back     alignment and structure
 Score =  150 bits (381), Expect = 5e-44
 Identities = 41/180 (22%), Positives = 79/180 (43%), Gaps = 10/180 (5%)

Query: 19  DSLKETFKKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGL----STHDKASVNYY 74
           D++ + F       +    +            K+G PV    +G       +   S    
Sbjct: 86  DTILQDFH-----YDEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERM 140

Query: 75  VQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQ-IKLMTVITTIDDL 133
           +++ +   E   +  LP+ S+  G  + TS  ++D+ G+ +S+    +  +   + I   
Sbjct: 141 LKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSVMSYVREASYISQN 200

Query: 134 NYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYASLPHF 193
            YPE+   +YI+NAP+ FS  +++ KP L   T  K+ +L  + + ELLK +   +LP  
Sbjct: 201 YYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVK 260
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Length = 403 Back     alignment and structure
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* Length = 320 Back     alignment and structure
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Length = 316 Back     alignment and structure
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Length = 262 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query288
1olm_A403 SEC14-like protein 2; lipid-binding protein, chole 100.0
1aua_A296 Phosphatidylinositol transfer protein SEC14P; phos 100.0
3q8g_A320 CRAL-TRIO domain-containing protein YKL091C; strin 100.0
3hx3_A316 Retinaldehyde-binding protein 1; lipid transfer pr 100.0
1r5l_A262 Alpha-TTP, protein (alpha-tocopherol transfer prot 100.0
3pg7_A256 Neurofibromin; SEC lipid binding domain, PH domain 99.35
3peg_A290 Neurofibromin; SEC14 domain, pleckstrin homology d 99.19
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Back     alignment and structure
Probab=100.00  E-value=1.6e-42  Score=330.39  Aligned_cols=238  Identities=23%  Similarity=0.328  Sum_probs=200.7

Q ss_pred             HHHHHHHHHHHHHHHHH-HHHhhCCCCCcHHHHHHHHhcCceeEeccCCCCCeEEEEecCCCCCC----CCCHHHHHHHH
Q 023029            4 QEEIKQFQTLMEDLDDS-LKETFKKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHD----KASVNYYVQSH   78 (288)
Q Consensus         4 ~~~~~~~~~~~~~~~~~-l~~~~~~pi~~~~~~~~lr~~~~~~~~G~Dk~GrPV~i~~~g~~d~~----~~~~~~~lk~~   78 (288)
                      +.|.+.|+..+.|+.+. +...++ -..+    +.++++++++++|+|++||||+++++|++|++    ..+.+++++++
T Consensus        50 ~~A~~~l~~~l~wR~~~~~~~i~~-~~~~----~~~~~~~~~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~  124 (403)
T 1olm_A           50 QKSEAMLRKHVEFRKQKDIDNIIS-WQPP----EVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTK  124 (403)
T ss_dssp             HHHHHHHHHHHHHHHHTTGGGGGG-SCCC----HHHHHHCCBEEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCcccc-cCCH----HHHHHhCCceeeccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHH
Confidence            45556665555555432 222232 1112    35677788999999999999999999999976    47899999999


Q ss_pred             HHHHHHHhhhcchhhhhhcCCccccEEEEEeCCCCCcCCCCh--HHHHHHHHHhhhccCccccceEEEEcCChhHHHHHH
Q 023029           79 IQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQ--IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWK  156 (288)
Q Consensus        79 i~~~E~~~~~~~~~~s~~~g~~i~~~v~IvDl~Gls~~~l~~--~~~~~~i~~i~~~~YPerl~~i~iVNaP~~f~~~w~  156 (288)
                      ++++|..++. ++.++++.|++++++++|+||+|++++|+++  +++++.+++++|+|||||++++||||+|++|+++|+
T Consensus       125 ~~~~E~~~~~-~~~~s~~~g~~v~~~~~I~D~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~  203 (403)
T 1olm_A          125 MRECELLLQE-CAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYN  203 (403)
T ss_dssp             HHHHHHHHHH-HHHHHHHHTSCCCCEEEEEECTTCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHH
T ss_pred             HHHHHHHHHH-HHhhHHhhCCcccceEEEEECCCCCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHH
Confidence            9999998764 4566777888899999999999999999985  478899999999999999999999999999999999


Q ss_pred             HHhcccchhhhcceEEeCCCCHhHHHhcCCCCCcccccccCCCCcccccCCCCCCCcccC---CCccchhHHHHHHhhhh
Q 023029          157 VVKPLLQERTRRKMQVLQGNGRDELLKIMDYASLPHFCRKEGSGSSRHIGNGTTENCFSL---DHAFHQRLYNYIKQQAV  233 (288)
Q Consensus       157 lvkpfL~e~Tr~KI~~~~~~~~~~L~k~Id~~~LP~~yGGe~GGt~~~~~~~~~~~c~~~---~~~~p~~~y~~l~~~~~  233 (288)
                      ++||||+++|++||+|+++++.++|.++||+++||++|    ||++.+  |++++.|.+.   ||++|+++|  +.+..+
T Consensus       204 ~ikpfl~~~t~~KI~~~~~~~~~~L~~~I~~~~LP~~y----GG~~~~--~~~~~~c~~~i~~gg~vp~~~~--~~~~~~  275 (403)
T 1olm_A          204 LIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVEY----GGTMTD--PDGNPKCKSKINYGGDIPRKYY--VRDQVK  275 (403)
T ss_dssp             HHGGGSCHHHHHTEEECCTTHHHHHTTTSCGGGSBGGG----TSSBCC--TTCCTTCTTTCBCCCCCCGGGC--SCSSCC
T ss_pred             HHHhhcCHhhhceEEEEChhHHHHHHhhcChhhCchhh----CCCcCC--CCCCcccccccccCCCCCcccc--cCCCcc
Confidence            99999999999999999877788999999999999999    999998  8999999976   899999999  655422


Q ss_pred             -cc-cceeeccCCceEEeccCCCC
Q 023029          234 -LT-ESVVPIRQGSFHVDFPEPDP  255 (288)
Q Consensus       234 -~~-~~~~~~~~~~~~v~~~~~~~  255 (288)
                       .. ++++|.+|++++|++++.++
T Consensus       276 ~~~~~~~~V~~g~~~~v~~~v~~~  299 (403)
T 1olm_A          276 QQYEHSVQISRGSSHQVEYEILFP  299 (403)
T ss_dssp             CCCSEEEEECTTCEEEEEEEECST
T ss_pred             cccceEEEEcCCCEEEEEEEEcCC
Confidence             23 56999999999999998643
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Back     alignment and structure
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* Back     alignment and structure
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Back     alignment and structure
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Back     alignment and structure
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 288
d1olma3199 c.13.1.1 (A:76-274) Supernatant protein factor (SP 2e-25
d1auaa2203 c.13.1.1 (A:97-299) C-terminal domain of phosphati 4e-23
d1r5la2185 c.13.1.1 (A:91-275) Alpha-tocopherol transfer prot 2e-13
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Length = 199 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.2 bits (244), Expect = 2e-25
 Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 7/155 (4%)

Query: 45  GVSGYSKEGLPVIAVGVGLST----HDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRY 100
           G+ GY  +G PV    +G          AS    +++ ++  E   +      + K GR 
Sbjct: 12  GMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQE-CAHQTTKLGRK 70

Query: 101 IGTSLKVLDMTGLKLSALNQ--IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVV 158
           + T   + D  GL L  L +  ++       + + NYPE  +  ++V AP +F   + ++
Sbjct: 71  VETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLI 130

Query: 159 KPLLQERTRRKMQVLQGNGRDELLKIMDYASLPHF 193
           KP L E TR+K+ VL  N ++ LLK +    +P  
Sbjct: 131 KPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVE 165
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 203 Back     information, alignment and structure
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 185 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query288
d1olma3199 Supernatant protein factor (SPF), middle domain {H 100.0
d1auaa2203 C-terminal domain of phosphatidylinositol transfer 100.0
d1r5la2185 Alpha-tocopherol transfer protein {Human (Homo sap 100.0
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-44  Score=312.66  Aligned_cols=187  Identities=25%  Similarity=0.389  Sum_probs=172.8

Q ss_pred             HHHHhcCceeEeccCCCCCeEEEEecCCCCCC----CCCHHHHHHHHHHHHHHHhhhcchhhhhhcCCccccEEEEEeCC
Q 023029           36 RAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHD----KASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMT  111 (288)
Q Consensus        36 ~~lr~~~~~~~~G~Dk~GrPV~i~~~g~~d~~----~~~~~~~lk~~i~~~E~~~~~~~~~~s~~~g~~i~~~v~IvDl~  111 (288)
                      +.+++|+|++|||+||+||||+++++|++|++    ..+.+++++++++.+|..++. +.+++.+.+++++++++|+||+
T Consensus         3 ~~i~~~~p~~~~G~Dk~Grpv~~~r~g~~d~~~l~~~~~~~~~~~~~~~~~E~~~~~-~~~~~~~~~~~v~~~~~I~Dl~   81 (199)
T d1olma3           3 EVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQE-CAHQTTKLGRKVETITIIYDCE   81 (199)
T ss_dssp             HHHHHHCCBEEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHH-HHHHHHHHTSCCCCEEEEEECT
T ss_pred             HHHHHHCCCccccCCCCCCEEEEEecccCChHHhhccCCHHHHHHHHHHHHHHHHHH-HHHHHHhcCCccceEEEEEECC
Confidence            46899999999999999999999999999975    468899999999999999874 4567777889999999999999


Q ss_pred             CCCcCCCCh--HHHHHHHHHhhhccCccccceEEEEcCChhHHHHHHHHhcccchhhhcceEEeCCCCHhHHHhcCCCCC
Q 023029          112 GLKLSALNQ--IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYAS  189 (288)
Q Consensus       112 Gls~~~l~~--~~~~~~i~~i~~~~YPerl~~i~iVNaP~~f~~~w~lvkpfL~e~Tr~KI~~~~~~~~~~L~k~Id~~~  189 (288)
                      |+|++++++  +++++.+++++|++||||++++||||+|++|+++|+++||||+++|++||+|+++++.++|.++|++++
T Consensus        82 g~s~~~~~~~~~~~l~~~~~~~q~~YPerl~~i~iiN~P~~f~~~w~ivk~fl~~~t~~KI~~~~~~~~~~L~~~i~~~~  161 (199)
T d1olma3          82 GLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQ  161 (199)
T ss_dssp             TCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSCGGG
T ss_pred             CCchhhhccccHHHHHHHHHHHHHHHHHhhhheEEECCCHHHHHHHHHHHHhcCHHhhccEEEeCCCCHHHHHHhCCHhh
Confidence            999999985  488999999999999999999999999999999999999999999999999998777899999999999


Q ss_pred             cccccccCCCCcccccCCCCCCCcccC---CCccchhHHHHHHhh
Q 023029          190 LPHFCRKEGSGSSRHIGNGTTENCFSL---DHAFHQRLYNYIKQQ  231 (288)
Q Consensus       190 LP~~yGGe~GGt~~~~~~~~~~~c~~~---~~~~p~~~y~~l~~~  231 (288)
                      ||++|    ||+|++  |+++++|...   ||++|+++|  ++++
T Consensus       162 lP~~y----GGt~~~--~~~~~~~~~~~~~~~~~p~~~~--~~~~  198 (199)
T d1olma3         162 VPVEY----GGTMTD--PDGNPKCKSKINYGGDIPRKYY--VRDQ  198 (199)
T ss_dssp             SBGGG----TSSBCC--TTCCTTCTTTCBCCCCCCGGGC--SCSS
T ss_pred             CCHHh----CCCCCC--CCCChhhhccCCCCCcCCHHHh--hccc
Confidence            99999    999998  8999999977   899999998  6654
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure