Citrus Sinensis ID: 023044


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
MSSLEEEERLVQMVHDFIESSESSSSSSPSSSKCLLSLQHHHQPSYFLTLQEILRSGNTEAEKEVLERVKKHLVMRSRRDGVLLKSSNGLKKWLVRKLKMDGFNASLCHTSWATSSGCPAGDYEYIDIMVEDEQTEEPIRLIVDIDFKSQFELARPTQAYKELTNILPSIFVGQEEKLNKIISLLCSAAKQSLKERGLHIPPWRTSTYMHSKWLSAGCQKCSENIESAFGRKNIEEENRSASVGNVAISMVKNPKRSAFGGGSASAAGAGPGCSGLSSQFSNMGINCC
ccccccccHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccEEEEccccccccccccccEEEEEEEEccccccccEEEEEEcccccccccccccHHHHHHHHHccccEEEcHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccccccHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccEEEEEccccccccccccEEEEEEEEccccccccEEEEEEccHHHHEEEccccHHHHHHHHHcccEEEccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccHHHHccccccc
MSSLEEEERLVQMVHDFIessesssssspssskcllslqhhhqpsyFLTLQEILRSGNTEAEKEVLERVKKHLVMRSRRDGVLLKSSNGLKKWLVRKLKMdgfnaslchtswatssgcpagdyeyidimvedeqteepirlivdidfksqfelarptQAYKELTNILPSIFVGQEEKLNKIISLLCSAAKQSLkerglhippwrtstymhskwlsagCQKCSENIESAfgrknieeenrsasvgNVAISMvknpkrsafgggsasaagagpgcsglssqfsnmgincc
MSSLEEEERLVQMVHDFIESsesssssspSSSKCLLSLQHHHQPSYFLTLQEILRSGNTEAEKEVLERVKKhlvmrsrrdgvllkssnglkKWLVRKLKMDGFNASLChtswatssgcpAGDYEYIDIMVEDEQTEEPIRLIVDIDFKSQFELARPTQAYKELTNILPSIFVGQEEKLNKIISLLCSAAKQSLKERGLHIPPWRTSTYMHSKWLSAGCQKCSENIESAFgrknieeenrsasvgnvAISMVKNPKRSAFGGGSASAAGAGPGCSglssqfsnmgincc
MSSLEEEERLVQMVHDFIessesssssspsssKCLLSLQHHHQPSYFLTLQEILRSGNTEAEKEVLERVKKHLVMRSRRDGVLLKSSNGLKKWLVRKLKMDGFNASLCHTSWATSSGCPAGDYEYIDIMVEDEQTEEPIRLIVDIDFKSQFELARPTQAYKELTNILPSIFVGQEEKLNKIISLLCSAAKQSLKERGLHIPPWRTSTYMHSKWLSAGCQKCSENIESAFGRKNIEEENRSASVGNVAISMVKNPKRsafgggsasaagagpgcsglssQFSNMGINCC
***********************************LSLQHHHQPSYFLTLQEILRS********VLERVKKHLVMRSRRDGVLLKSSNGLKKWLVRKLKMDGFNASLCHTSWATSSGCPAGDYEYIDIMVEDEQTEEPIRLIVDIDFKSQFELARPTQAYKELTNILPSIFVGQEEKLNKIISLLCSAAKQSLKERGLHIPPWRTSTYMHSKWLSAGCQKCSENI***************************************************************
******E**LVQMVHDFI*****************************LT*************KEVLERVKKHLVMR************GLKKWLVRKLKMDGFNASLCH**********AGDYEYIDIMVEDEQTEEPIRLIVDIDFKSQFELARPTQAYKELTNILPSIFVGQEEKLNKIISLLCSAAKQ*******HIPPWRTSTYMHSKWLSA************************************************************SSQFSNMGINCC
********RLVQMVHDF********************LQHHHQPSYFLTLQEILRSGNTEAEKEVLERVKKHLVMRSRRDGVLLKSSNGLKKWLVRKLKMDGFNASLCHTSWATSSGCPAGDYEYIDIMVEDEQTEEPIRLIVDIDFKSQFELARPTQAYKELTNILPSIFVGQEEKLNKIISLLCSAAKQSLKERGLHIPPWRTSTYMHSKWLSAGCQKCSENIESAFGRKNIEEENRSASVGNVAISMVKNPKRS**************GCSGLSSQFSNMGINCC
***************************************HHHQPSYFLTLQEILRSGNTEAEKEVLERVKKHLVMRSRRDGVLLKSSNGLKKWLVRKLKMDGFNASLCHTSWATSSGCPAGDYEYIDIMVEDEQTEEPIRLIVDIDFKSQFELARPTQAYKELTNILPSIFVGQEEKLNKIISLLCSAAKQSLKERGLHIPPWRTSTYMHSKWLSAGC***************************************************************N****CC
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSSLEEEERLVQMVHDFIESSESSSSSSPSSSKCLLSLQHHHQPSYFLTLQEILRSGNTEAEKEVLERVKKHLVMRSRRDGVLLKSSNGLKKWLVRKLKMDGFNASLCHTSWATSSGCPAGDYEYIDIMVEDEQTEEPIRLIVDIDFKSQFELARPTQAYKELTNILPSIFVGQEEKLNKIISLLCSAAKQSLKERGLHIPPWRTSTYMHSKWLSAGCQKCSENIESAFGRKNIEEENRSASVGNVAISMVKNPKRSAFGGGSASAAGAGPGCSGLSSQFSNMGINCC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query288
255552382258 conserved hypothetical protein [Ricinus 0.881 0.984 0.568 3e-73
225431529271 PREDICTED: uncharacterized protein LOC10 0.920 0.977 0.534 3e-70
357519917270 hypothetical protein MTR_8g093440 [Medic 0.920 0.981 0.529 9e-70
388507850270 unknown [Medicago truncatula] 0.920 0.981 0.525 1e-69
224093360257 predicted protein [Populus trichocarpa] 0.833 0.933 0.601 4e-69
356525590265 PREDICTED: uncharacterized protein LOC10 0.913 0.992 0.531 8e-67
363814268272 uncharacterized protein LOC100782815 [Gl 0.923 0.977 0.523 6e-65
449511151258 PREDICTED: uncharacterized protein LOC10 0.756 0.844 0.555 2e-59
449459234256 PREDICTED: uncharacterized protein LOC10 0.756 0.851 0.555 3e-59
388516673266 unknown [Lotus japonicus] 0.913 0.988 0.505 3e-59
>gi|255552382|ref|XP_002517235.1| conserved hypothetical protein [Ricinus communis] gi|223543606|gb|EEF45135.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  281 bits (718), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 161/283 (56%), Positives = 190/283 (67%), Gaps = 29/283 (10%)

Query: 6   EEERLVQMVHDFIESSESSSSSSPSSSKCLLSLQHHHQPSYFLTLQEILRSGNTEAEKEV 65
           EEERLVQMV DFIES  SS    PSSSKCL       Q  YF+ L+EIL    TEAE +V
Sbjct: 5   EEERLVQMVQDFIESESSSVPIFPSSSKCL---STEDQAKYFI-LKEIL-GRVTEAEAKV 59

Query: 66  LERVKKHLVMRSRRDGVLLKSSNGLKKWLVRKLKMDGFNASLCHTSWATSSGCPAGDYEY 125
           LE V KH  M+ +++    + ++ LKKWLV +L +DGFNAS+C T+  TS GC AGDYEY
Sbjct: 60  LESVLKH--MKCKKEA---ERTSSLKKWLVLRLTLDGFNASICQTTLITSLGCKAGDYEY 114

Query: 126 IDIMVEDEQTEEPIRLIVDIDFKSQFELARPTQAYKELTNILPSIFVGQEEKLNKIISLL 185
           IDI +++E  +   R+IVDIDF+SQFELARPT  YKELT  +PS+FVG EEKLNKIISLL
Sbjct: 115 IDITLKEENGKSIKRVIVDIDFRSQFELARPTLFYKELTETVPSLFVGSEEKLNKIISLL 174

Query: 186 CSAAKQSLKERGLHIPPWRTSTYMHSKWLSAGCQKCSENIESAFGRKNIEEENRSASVGN 245
           CSAAKQSL ERGLH+PPWRTSTYM SKWL       + N  S     N  E N+S S+  
Sbjct: 175 CSAAKQSLTERGLHVPPWRTSTYMQSKWLKVTAT--TPNYSS-----NTAEANQSFSIWT 227

Query: 246 VAISMVKNPKRSAFGGGSASAAGAGPGCSGLSSQFSNMGINCC 288
               +VK+ +R A GGGSA           LSSQFS MGINCC
Sbjct: 228 PPKPIVKHERR-ALGGGSA-----------LSSQFSTMGINCC 258




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431529|ref|XP_002275260.1| PREDICTED: uncharacterized protein LOC100243761 [Vitis vinifera] gi|296088574|emb|CBI37565.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357519917|ref|XP_003630247.1| hypothetical protein MTR_8g093440 [Medicago truncatula] gi|355524269|gb|AET04723.1| hypothetical protein MTR_8g093440 [Medicago truncatula] Back     alignment and taxonomy information
>gi|388507850|gb|AFK41991.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|224093360|ref|XP_002309896.1| predicted protein [Populus trichocarpa] gi|222852799|gb|EEE90346.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356525590|ref|XP_003531407.1| PREDICTED: uncharacterized protein LOC100800694 [Glycine max] Back     alignment and taxonomy information
>gi|363814268|ref|NP_001242774.1| uncharacterized protein LOC100782815 [Glycine max] gi|255635193|gb|ACU17952.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|449511151|ref|XP_004163878.1| PREDICTED: uncharacterized protein LOC101223333 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449459234|ref|XP_004147351.1| PREDICTED: uncharacterized protein LOC101214990 [Cucumis sativus] Back     alignment and taxonomy information
>gi|388516673|gb|AFK46398.1| unknown [Lotus japonicus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query288
TAIR|locus:2195965263 AT1G77160 "AT1G77160" [Arabido 0.729 0.798 0.379 1.3e-34
TAIR|locus:2040389310 AT2G38820 "AT2G38820" [Arabido 0.517 0.480 0.448 3.2e-33
TAIR|locus:2130005341 AT4G14620 "AT4G14620" [Arabido 0.559 0.472 0.393 2e-31
TAIR|locus:504956170260 AT1G77145 "AT1G77145" [Arabido 0.628 0.696 0.401 4.2e-31
TAIR|locus:2084593370 AT3G22970 "AT3G22970" [Arabido 0.440 0.343 0.451 7.1e-29
TAIR|locus:2039757291 AT2G39650 "AT2G39650" [Arabido 0.597 0.591 0.357 1e-27
TAIR|locus:2079691298 AT3G07350 "AT3G07350" [Arabido 0.621 0.600 0.347 1.3e-27
TAIR|locus:2090295281 AT3G25240 "AT3G25240" [Arabido 0.809 0.829 0.296 1.4e-25
TAIR|locus:2096946288 AT3G54550 "AT3G54550" [Arabido 0.527 0.527 0.362 1.6e-24
TAIR|locus:2127856287 AT4G32480 "AT4G32480" [Arabido 0.559 0.560 0.329 3.3e-24
TAIR|locus:2195965 AT1G77160 "AT1G77160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 88/232 (37%), Positives = 133/232 (57%)

Query:     1 MSSLEEEERLVQMVHDFIXXXXXXXXXXXXXXKCLLSLQHHHQPSYFLTLQEILRSGNTE 60
             M SL EE+   ++V  +I              K L++LQ        + LQEILR+   E
Sbjct:     1 MGSLGEED-FEKLVLGYIESPMTVSQHINTSSKALITLQE-------IFLQEILRAKGVE 52

Query:    61 AEKEVLERVKKHLVMRSRRDGVLLKSSNGLKKWLVRKLKMDGFNASLCHTSWATS----S 116
              EKE+ E+++ + + R R           +   +V KL+ +G+NASL  TSW +S     
Sbjct:    53 -EKEMEEKIRSY-INRGRLSYEGDDEKRDVMNKIVSKLRSEGYNASLSKTSWDSSFDHRE 110

Query:   117 GCP----AGDYEYIDIMVEDEQTEEPI----RLIVDIDFKSQFELARPTQAYKELTNILP 168
             GC     +  YEYID MV  +   + +    R+I+D+DFK+QFELAR T+AYK++T +LP
Sbjct:   111 GCRVFTCSRKYEYIDAMVIGDSDRDGVSKLKRVIIDLDFKTQFELARQTEAYKDMTEMLP 170

Query:   169 SIFVGQEEKLNKIISLLCSAAKQSLKERGLHIPPWRTSTYMHSKWLSAGCQK 220
             ++FV  E +L +++SL+C   K+S+K+ G+  PPWRTS YM SKWL   C++
Sbjct:   171 TVFVATEGRLRRVVSLVCGEMKKSMKKEGMSRPPWRTSRYMQSKWLPENCRR 222




GO:0003674 "molecular_function" evidence=ND
GO:0005575 "cellular_component" evidence=ND
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2040389 AT2G38820 "AT2G38820" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130005 AT4G14620 "AT4G14620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504956170 AT1G77145 "AT1G77145" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084593 AT3G22970 "AT3G22970" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039757 AT2G39650 "AT2G39650" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079691 AT3G07350 "AT3G07350" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090295 AT3G25240 "AT3G25240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2096946 AT3G54550 "AT3G54550" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127856 AT4G32480 "AT4G32480" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
estExt_fgenesh4_pg.C_LG_VII0336
hypothetical protein (257 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query288
TIGR01615131 TIGR01615, A_thal_3542, uncharacterized plant-spec 2e-52
pfam04720218 pfam04720, DUF506, Protein of unknown function (DU 2e-50
>gnl|CDD|233493 TIGR01615, A_thal_3542, uncharacterized plant-specific domain TIGR01615 Back     alignment and domain information
 Score =  167 bits (424), Expect = 2e-52
 Identities = 56/129 (43%), Positives = 92/129 (71%)

Query: 91  KKWLVRKLKMDGFNASLCHTSWATSSGCPAGDYEYIDIMVEDEQTEEPIRLIVDIDFKSQ 150
           ++ ++  L+  G++A++C + W +S   PAG YEYID++  D   ++ +R+I+D+DF+S+
Sbjct: 1   RRIVMSLLRSLGYDAAICKSKWDSSGDIPAGKYEYIDVVDGDGSKKQEMRVIIDLDFRSE 60

Query: 151 FELARPTQAYKELTNILPSIFVGQEEKLNKIISLLCSAAKQSLKERGLHIPPWRTSTYMH 210
           FE+ARPT+ YK L   LP +FVG  E+L +++ L+C AAK+SLK++G+ +PPWR + YM 
Sbjct: 61  FEIARPTEEYKRLLESLPEVFVGTTERLRQLVRLMCDAAKKSLKKKGMPLPPWRKNRYMQ 120

Query: 211 SKWLSAGCQ 219
           SKWL    +
Sbjct: 121 SKWLGPYKR 129


This model represents a domain found toward the C-terminus of a number of uncharacterized plant proteins. The domain is strongly conserved (greater than 30 % sequence identity between most pairs of members) but flanked by highly divergent regions including stretches of low-complexity sequence. Length = 131

>gnl|CDD|218228 pfam04720, DUF506, Protein of unknown function (DUF506) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 288
PF04720218 DUF506: Protein of unknown function (DUF506) ; Int 100.0
TIGR01615131 A_thal_3542 uncharacterized plant-specific domain 100.0
PF00797240 Acetyltransf_2: N-acetyltransferase; InterPro: IPR 91.66
PRK15047281 N-hydroxyarylamine O-acetyltransferase; Provisiona 86.9
PF0874274 C8: C8 domain; InterPro: IPR014853 The proteins in 84.57
>PF04720 DUF506: Protein of unknown function (DUF506) ; InterPro: IPR006502 This family of uncharacterised plant proteins are defined by a region found toward the C terminus Back     alignment and domain information
Probab=100.00  E-value=1.6e-67  Score=475.71  Aligned_cols=207  Identities=40%  Similarity=0.747  Sum_probs=171.9

Q ss_pred             HHHHHHHHhhCCCCCCCC-C--C---CCCccccccccC--CCchhHHHHHHHHhcCCChHHHH---HHHHHHHHHHHhhc
Q 023044           10 LVQMVHDFIESSESSSSS-S--P---SSSKCLLSLQHH--HQPSYFLTLQEILRSGNTEAEKE---VLERVKKHLVMRSR   78 (288)
Q Consensus        10 La~MV~dFiE~~~s~~~~-s--~---~ss~~~~~~~~~--~~~~~~~~Lq~il~~~~~~~E~~---ll~~v~~~l~~~~~   78 (288)
                      |++||++|||++..+... +  .   .++.+..+.+..  ....+.+.||.||.+. +..|+.   |+++|.++  +...
T Consensus         1 Ls~mV~~FlE~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~e~l~~Ll~~~-~~~e~~~~~l~~~v~~~--v~~~   77 (218)
T PF04720_consen    1 LSDMVQGFLEEEESSAPSFSFSGNGDDSSDEDSDSDSGSSESAEFWEELQELLQCI-SERESSRRRLLADVRRA--VEEA   77 (218)
T ss_pred             CHHHHHHHhccCCcccccccccccCCCCccccccccCcccchHHHHHHHHHHHhcc-ccccchHHHHHHHHHHH--HHHH
Confidence            789999999998443322 1  1   111121111010  1123567889999988 566766   99999988  4333


Q ss_pred             cccccccchhhHHHHHHHHHHhCCCceEEeeecCCCCCCCCCCccceEEEEEccCCCCCCeEEEEecCcccceeeccCcH
Q 023044           79 RDGVLLKSSNGLKKWLVRKLKMDGFNASLCHTSWATSSGCPAGDYEYIDIMVEDEQTEEPIRLIVDIDFKSQFELARPTQ  158 (288)
Q Consensus        79 ~~~~~~~~~~~lrr~v~~~Lr~~GydAaiCkSrW~~s~~~paG~yEYIdVi~~~~~~~~~~r~IVD~dFR~qFeIArpT~  158 (288)
                      ......++++|+||.||++||.+||||+||||+|++++++|+|+||||||++.+++.++.+|||||||||+||||||||+
T Consensus        78 ~~~~~~~~~~~~rr~v~~~Lr~~GydAaiCkS~W~~s~~~p~g~yeyIdV~~~~~~~~~~~r~IVd~~fr~~FeiArpt~  157 (218)
T PF04720_consen   78 KDEIKRGCRSCLRRSVMSRLRALGYDAAICKSRWESSGGIPAGEYEYIDVIVSGSSSGKSERYIVDPDFRSQFEIARPTP  157 (218)
T ss_pred             HhhhcccchHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCcceeEEEEEECCCCCCcceeEEEecchHhCeeecCCCH
Confidence            32111268999999999999999999999999999999999999999999999876778999999999999999999999


Q ss_pred             HHHHHHhhCCCceeeChHHHHHHHHHHHHHHHHHHHHcCCCCCCCCchhhHhhhccCCCcc
Q 023044          159 AYKELTNILPSIFVGQEEKLNKIISLLCSAAKQSLKERGLHIPPWRTSTYMHSKWLSAGCQ  219 (288)
Q Consensus       159 ~Y~~ll~~LP~vFVG~~~rL~~lV~~mc~a~k~S~k~~Gm~lPPWRk~~ym~sKWl~~~~~  219 (288)
                      +|++||+.||.||||+.++|++||++||+|||+|||++|||||||||.+|||+|||++|+|
T Consensus       158 ~Y~~ll~~lP~vfVG~~~~L~~iV~~~c~a~k~s~k~~g~~lPPWR~~~ym~aKW~~~y~R  218 (218)
T PF04720_consen  158 EYAALLAALPEVFVGTPERLKQIVRLMCDAAKRSFKERGMHLPPWRKNSYMQAKWLSPYKR  218 (218)
T ss_pred             HHHHHHHhCCCceEcCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCchHHHHHhccCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999876



This region is strongly conserved (greater than 30 % sequence identity between most pairs of members) but flanked by highly divergent regions including stretches of low-complexity sequence.

>TIGR01615 A_thal_3542 uncharacterized plant-specific domain TIGR01615 Back     alignment and domain information
>PF00797 Acetyltransf_2: N-acetyltransferase; InterPro: IPR001447 Arylamine N-acetyltransferase (NAT) is a cytosolic enzyme of approximately 30 kDa Back     alignment and domain information
>PRK15047 N-hydroxyarylamine O-acetyltransferase; Provisional Back     alignment and domain information
>PF08742 C8: C8 domain; InterPro: IPR014853 The proteins in this entry contained a domain rich in positionally conserved cysteine residues Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query288
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 44.1 bits (103), Expect = 4e-05
 Identities = 41/302 (13%), Positives = 85/302 (28%), Gaps = 85/302 (28%)

Query: 1   MSSLEEEERLVQMVHD-FIESSESSSSSSPSSSK--------------CLLSLQHHHQPS 45
           MS ++ E+R   M+   +IE  +   + +   +K               LL L+    P+
Sbjct: 95  MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR----PA 150

Query: 46  YFLTLQ------------EILRS----------------GNTEAEKEVLE-------RVK 70
             + +             ++  S                 N  + + VLE       ++ 
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210

Query: 71  KHLVMRSRRDGVLLKSSNGLKKWLVRKLKMDGFNASL------CHTS-W-ATSSGCP--- 119
            +   RS     +    + ++  L R LK   +   L       +   W A +  C    
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270

Query: 120 -AGDYEYIDIMVEDEQTEEPIRLIVDIDFKSQFELARPTQAYKELTNILPSIFVGQEEKL 178
                +  D +     T   +                      E+ ++L      + + L
Sbjct: 271 TTRFKQVTDFLSAATTTHISL-----DHHSMTLTPD-------EVKSLLLKYLDCRPQDL 318

Query: 179 ----NKIISLLCSAAKQSLKERGLHIPPWRTSTYMHSKWLSAGCQKCSENIESAFGRKNI 234
                       S   +S+++       W+       K L+   +     +E A  RK  
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWK--HVNCDK-LTTIIESSLNVLEPAEYRKMF 375

Query: 235 EE 236
           + 
Sbjct: 376 DR 377


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query288
1e2t_A284 NAT, N-hydroxyarylamine O-acetyltransferase; acety 89.62
1w4t_A299 Arylamine N-acetyltransferase; 5- aminosalicylic a 87.43
2bsz_A278 Arylamine N-acetyltransferase 1; acyltransferase, 86.86
2vfb_A280 Arylamine N-acetyltransferase; NAT, acetyl COA, my 84.98
1w5r_A278 Arylamine N-acetyltransferase; acyltransferase; 1. 84.62
3lnb_A309 N-acetyltransferase family protein; arylamine N-ac 82.88
3d9w_A293 Putative acetyltransferase; arylamine N-acetyltran 82.82
>1e2t_A NAT, N-hydroxyarylamine O-acetyltransferase; acetyl COA dependent; 2.8A {Salmonella typhimurium} SCOP: d.3.1.5 Back     alignment and structure
Probab=89.62  E-value=0.75  Score=41.89  Aligned_cols=55  Identities=24%  Similarity=0.291  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHhCCCceEEeeec--CCCCCCCCCCccceEEEEEccCCCCCCeEEEEecCcccc
Q 023044           90 LKKWLVRKLKMDGFNASLCHTS--WATSSGCPAGDYEYIDIMVEDEQTEEPIRLIVDIDFKSQ  150 (288)
Q Consensus        90 lrr~v~~~Lr~~GydAaiCkSr--W~~s~~~paG~yEYIdVi~~~~~~~~~~r~IVD~dFR~q  150 (288)
                      +...+...|++.||++..+..+  |......++..|-.+-|.+.      +.+||||+.|=..
T Consensus        75 lN~Lf~~~L~~LGF~V~~~~~rV~~~~~~~~~~~~H~~l~V~id------g~~ylvDVGFG~~  131 (284)
T 1e2t_A           75 LNGLFERALRDIGFNVRSLLGRVILSHPASLPPRTHRLLLVDVE------DEQWIADVGFGGQ  131 (284)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEEEECTTCCSSCCCSCEEEEEEEET------TEEEEECSCSCTT
T ss_pred             HHHHHHHHHHHCCCeEEEEEEEEecCCCCCCCCCccEEEEEEEC------CceEEEecCCCcc
Confidence            3566888999999999998864  55444455788998888775      3599999999763



>1w4t_A Arylamine N-acetyltransferase; 5- aminosalicylic acid, NAT, xenobiotic metabolism, acyltransferase; 1.95A {Pseudomonas aeruginosa} SCOP: d.3.1.5 Back     alignment and structure
>2bsz_A Arylamine N-acetyltransferase 1; acyltransferase, complete proteome; 2.0A {Rhizobium loti} SCOP: d.3.1.5 Back     alignment and structure
>2vfb_A Arylamine N-acetyltransferase; NAT, acetyl COA, mycobacteria, actyltransferase; 2.00A {Mycobacterium marinum} PDB: 2vfc_A* 3ltw_A* Back     alignment and structure
>1w5r_A Arylamine N-acetyltransferase; acyltransferase; 1.45A {Mycobacterium smegmatis} SCOP: d.3.1.5 PDB: 1w6f_A* 1gx3_A Back     alignment and structure
>3lnb_A N-acetyltransferase family protein; arylamine N-acetyltransferase, NAT, acetyltrans acyltransferase; HET: COA; 2.01A {Bacillus anthracis} Back     alignment and structure
>3d9w_A Putative acetyltransferase; arylamine N-acetyltransferase, NAT, X-RAY diffraction, acyltransferase; 2.70A {Nocardia farcinica} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query288
d1e2ta_274 Arylamine N-acetyltransferase {Salmonella typhimur 91.36
d1w5ra1273 Arylamine N-acetyltransferase {Mycobacterium smegm 89.15
d1w4ta1277 Arylamine N-acetyltransferase {Pseudomonas aerugin 85.6
d2bsza1270 Arylamine N-acetyltransferase {Rhizobium loti [Tax 85.52
>d1e2ta_ d.3.1.5 (A:) Arylamine N-acetyltransferase {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Arylamine N-acetyltransferase
domain: Arylamine N-acetyltransferase
species: Salmonella typhimurium [TaxId: 90371]
Probab=91.36  E-value=0.2  Score=43.19  Aligned_cols=54  Identities=22%  Similarity=0.279  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHhCCCceEEeeec--CCCCCCCCCCccceEEEEEccCCCCCCeEEEEecCccc
Q 023044           90 LKKWLVRKLKMDGFNASLCHTS--WATSSGCPAGDYEYIDIMVEDEQTEEPIRLIVDIDFKS  149 (288)
Q Consensus        90 lrr~v~~~Lr~~GydAaiCkSr--W~~s~~~paG~yEYIdVi~~~~~~~~~~r~IVD~dFR~  149 (288)
                      +...+...|+++||++.+...+  |......|.+.|--+-|.+.      +.+|+||+.|-.
T Consensus        73 lN~lf~~lL~~LGF~v~~~~arV~~~~~~~~~~~~H~~l~V~i~------~~~yLvDvGfG~  128 (274)
T d1e2ta_          73 LNGLFERALRDIGFNVRSLLGRVILSHPASLPPRTHRLLLVDVE------DEQWIADVGFGG  128 (274)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEEEECTTCCSSCCCSCEEEEEEEET------TEEEEECSCSCT
T ss_pred             hHHHHHHHHHHcCCceEEEEEEEecCCCCCCCCCceEEEEEEEC------CeeEEEeccCCC
Confidence            4667889999999999887764  44444456788999888875      359999999953



>d1w5ra1 d.3.1.5 (A:3-275) Arylamine N-acetyltransferase {Mycobacterium smegmatis [TaxId: 1772]} Back     information, alignment and structure
>d1w4ta1 d.3.1.5 (A:1-277) Arylamine N-acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2bsza1 d.3.1.5 (A:6-275) Arylamine N-acetyltransferase {Rhizobium loti [TaxId: 381]} Back     information, alignment and structure