Citrus Sinensis ID: 023047

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
Protein Sequence
MDTAQWPQEIVVKPIEEIVTNTCPKPASAAALERKARPQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSSSSKKLPDPATPPSHHPHQNPKIHDHGEDLNLSFPAATTQGYRSFSELVQLPNIDNKSQIPISSSTTTTTTTTSSQQLSALELLTGISSRGLNSFMPMPVPDPNAIYAPGFPMQDFKPTLNFSLDGLGSGYGSLHHQSVQENNGRLLFPFEDLKQVSSTSDHMEQNREHGDSSGYWTGMLGGGSWWGA
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHcccccccccHHHHHHHccccccccccccccccccccEEEEccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccHHHHccccccccccEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccHHHccccccccccccccccccccEEEEEcccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccHHHHHccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccEEEEEccccccccccccccccccccccccccEcccccccccccc
Coil and Loop (DISEMBL)
mdtaqwpqeivvkpieeivtntcpkpasaAALERKarpqkeqalncprcnstntkfcyynnysltqpryfcktcrrywteggslrnipvgggsrknkrssssskklpdpatppshhphqnpkihdhgedlnlsfpaattqgyRSFSelvqlpnidnksqipisssttttttttssQQLSALELLTGIssrglnsfmpmpvpdpnaiyapgfpmqdfkptlnfsldglgsgygslhhqsvqenngrllfpfedlkqvsstsdhmeqnrehgdssgywtgmlgggswwga
Flexible Loop (DISEMBL)
mdtaqwpqeivvkpieeivtntCPKPASAAALERkarpqkeqalncprcnstntkFCYYNNYSLTQPRYFCKTCRRYWTEggslrnipvgggsrknkrssssskklpdpatppsHHPHQNPKIHDHGEDLNLSFPAATTQGYRSFSELVQLpnidnksqipisssttttttttssqqLSALELLTGISSRGLNSFMPMPVPDPNAIYAPGFPMQDFKPTLNFSLDGLGSGYGSLHHQSVQENNGRLLFPFEDLKQVSSTSDHMEqnrehgdssgywtgmlgggswwga
Low Complexity Region (SEG)
MDTAQWPQEIVVKPIEEIVTNTCPKPASAAALERKARPQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGsrknkrssssskkLPDPATPPSHHPHQNPKIHDHGEDLNLSFPAATTQGYRSFSELVQLPNIDNKSQIPIsssttttttttssQQLSALELLTGISSRGLNSFMPMPVPDPNAIYAPGFPMQDFKPTLNFsldglgsgygslHHQSVQENNGRLLFPFEDLKQVSSTSDHMEQNREHGDSSGYWTGMLGGGSWWGA
Disordered region (IsUnstruct)
********EIVVKPIEEIVTNT**********************NCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNI********************************************************************************************************************NAIYAPGFPMQDFKPTLNFSLDGLGSGYGSLH*********RLLFPF************************YWTGMLGGGSWW**
Disordered Region (DISOPRED)
***********************************************RCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRN*************************************************************************************************************************************************************************************************L*G******
Disordered Region (DISEMBL)
MDTAQWPQEIVVKPIEEIVTNTCPKP*****************LNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVG*******************************KIHDHGEDLNLSFPAATTQGYRSFSELVQLPNIDNKSQIPIS*************QLSALELLTGISSRGLNSFMPMPVPDPNAIYAPGFPMQDFKPTLNFSLDGLGSGYGSLHHQSVQENNGRLLFPFEDLKQ**************GDSSGYWTGMLGGGSWWGA
Disordered Region (DISPRO)
*****************************************QALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVG*************************************EDLNLSFPAATTQGYRSFSELVQLPNIDNK***********TTTTTSSQQLSALELLTGISSRGLNSFMPMPVPDPNAIYAPGFPMQDFKPTLNFSLDGLGSGYGSLHHQSVQENNGRLLFPFEDLK**********************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDTAQWPQEIVVKPIEEIVTNTCPKPASAAALERKARPQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSSSSKKLPDPATPPSHHPHQNPKIHDHGEDLNLSFPAATTQGYRSFSELVQLPNIDNKSQIPISSSTTTTTTTTSSQQLSALELLTGISSRGLNSFMPMPVPDPNAIYAPGFPMQDFKPTLNFSLDGLGSGYGSLHHQSVQENNGRLLFPFEDLKQVSSTSDHMEQNREHGDSSGYWTGMLGGGSWWGA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	288	2.2.26 [Sep-21-2011]
Q8LAP8	342	Dof zinc finger protein D	yes	no	0.940	0.792	0.464	7e-58
Q84JQ8	352	Dof zinc finger protein D	no	no	0.916	0.75	0.440	6e-50
Q43385	296	Dof zinc finger protein D	no	no	0.829	0.807	0.415	4e-49
Q9ZPY0	369	Dof zinc finger protein D	no	no	0.881	0.688	0.462	1e-43
Q84TE9	257	Dof zinc finger protein D	no	no	0.618	0.692	0.446	3e-30
Q9M161	294	Dof zinc finger protein D	no	no	0.743	0.727	0.373	2e-29
Q8LE43	288	Dof zinc finger protein D	no	no	0.336	0.336	0.6	2e-29
O24463	328	Dof zinc finger protein P	N/A	no	0.402	0.353	0.515	6e-29
Q9M2U1	323	Dof zinc finger protein D	no	no	0.361	0.321	0.523	7e-29
Q9M1E6	245	Dof zinc finger protein D	no	no	0.385	0.453	0.531	2e-28

>sp|Q8LAP8|DOF46_ARATH Dof zinc finger protein DOF4.6 OS=Arabidopsis thaliana GN=DOF4.6 PE=2 SV=2

 Score =  224 bits (570), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 165/355 (46%), Positives = 199/355 (56%), Gaps = 84/355 (23%)

Query: 1   MDTAQWPQEIVVKPIEEIVTNTCPKPAS---------AAALERKARPQKEQALNCPRCNS 51
           MDTAQWPQEIVVKP+EEIVTNTCPKP           +   ERKARP+K+QA+NCPRCNS
Sbjct: 1   MDTAQWPQEIVVKPLEEIVTNTCPKPQPQPLQPQQPPSVGGERKARPEKDQAVNCPRCNS 60

Query: 52  TNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSSSSKKL----- 106
           TNTKFCYYNNYSLTQPRYFCK CRRYWTEGGSLRNIPVGGGSRKNKRS SSS  +     
Sbjct: 61  TNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPVGGGSRKNKRSHSSSSDISNNHS 120

Query: 107 --PDPATPP---SHHPH-----------QNPK-IHDHGEDLNLSF-PAATTQGYRSFSEL 148
               PAT      HH H           QNPK +    +DLNL F P    +   +F++L
Sbjct: 121 DSTQPATKKHLSDHHHHLMSMSQQGLTGQNPKFLETTQQDLNLGFSPHGMIR--TNFTDL 178

Query: 149 VQLPNIDNKSQIPISSSTTTTTTTTSSQQLSALELL---TGISSRGLNSFMPMPVPDPNA 205
           +   NI N +    +++     ++ S+   S+L+L+   +   +   +SFM  PV + + 
Sbjct: 179 IH--NIGNNTNKSNNNNNPLIVSSCSAMATSSLDLIRNNSNNGNSSNSSFMGFPVHNQDP 236

Query: 206 IYAPGFPMQD-FKPT------LNFSLDGLGSGYGSLHHQS----------------VQEN 242
             + GF MQD +KP       L FSLD         HH +                  + 
Sbjct: 237 A-SGGFSMQDHYKPCNTNTTLLGFSLD---------HHHNNGFHGGFQGGEEGGEGGDDV 286

Query: 243 NGRLLFPFEDLKQ-VSSTSDHM------EQNREHGD-----SSGYWTGMLGGGSW 285
           NGR LFPFEDLK  VSS+S  +       Q R  G      S GYWTGML GGSW
Sbjct: 287 NGRHLFPFEDLKLPVSSSSATINVDINEHQKRGSGSDAAATSGGYWTGMLSGGSW 341

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.
Arabidopsis thaliana (taxid: 3702)

>sp|Q84JQ8|DOF18_ARATH Dof zinc finger protein DOF1.8 OS=Arabidopsis thaliana GN=DOF1.8 PE=2 SV=1

 Score =  197 bits (502), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 156/354 (44%), Positives = 186/354 (52%), Gaps = 90/354 (25%)

Query: 1   MDTAQWPQEIVVKPIEEIVTNTCPK-----PASAAALERKARPQKEQALNCPRCNSTNTK 55
           MDTA+WPQE VVKP+ EIVTNTC K     P+ A  +ERKARP+K+QALNCPRCNS NTK
Sbjct: 1   MDTAKWPQEFVVKPMNEIVTNTCLKQQSNPPSPATPVERKARPEKDQALNCPRCNSLNTK 60

Query: 56  FCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSSSSKK---------- 105
           FCYYNNYSLTQPRYFCK CRRYWT GGSLRNIPVGGG RKNKRSSS+S            
Sbjct: 61  FCYYNNYSLTQPRYFCKDCRRYWTAGGSLRNIPVGGGVRKNKRSSSNSSSSSPSSSSSSK 120

Query: 106 ---LPDPATPPSHHPHQNPKIHDHG-------------------EDLNLSFPAATTQGYR 143
                +  TP    PH NPKI +                     +DLNL+F      G+ 
Sbjct: 121 KPLFANNNTPTPPLPHLNPKIGEAAATKVQDLTFSQGFGNAHEVKDLNLAFSQGFGIGHN 180

Query: 144 SFSELVQLPNIDNKSQIPISSSTTTTTTTTSSQQLSALELLTGISSRGLN-----SFMPM 198
             S + +   +     +P SS       +TS    S+LELL GISS   +     +FM  
Sbjct: 181 HHSSIPEFLQV-----VPSSSMKNNPLVSTS----SSLELL-GISSSSASSNSRPAFMSY 230

Query: 199 P-VPDPNAIYAPGFPM-----QDF-KPTLNFSLDGLGSGYGSLHHQ---SVQENNGRLLF 248
           P V D +   A GF +     Q+F +P L FSLDG     G    Q   S   NNGR L 
Sbjct: 231 PNVHDSSVYTASGFGLSYPQFQEFMRPALGFSLDG-----GDPLRQEEGSSGTNNGRPLL 285

Query: 249 PFEDLKQV-------------------SSTSDHMEQNREHGD---SSGYWTGML 280
           PFE L ++                      SDH E  +E G+   S G+W+GML
Sbjct: 286 PFESLLKLPVSSSSTNSGGNGNLKENNDEHSDH-EHEKEEGEADQSVGFWSGML 338

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q43385|DOF37_ARATH Dof zinc finger protein DOF3.7 OS=Arabidopsis thaliana GN=DOF3.7 PE=1 SV=2

 Score =  195 bits (495), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 142/342 (41%), Positives = 186/342 (54%), Gaps = 103/342 (30%)

Query: 1   MDTAQWPQ----EIVVKPIEEIV----------------TNTCPKPASA----------- 29
           MD  +W Q     I VKP+E+++                TNT P   ++           
Sbjct: 1   MDATKWTQGFQEMINVKPMEQMISSTNNNTPQQQPTFIATNTRPNATASNGGSGGNTNNT 60

Query: 30  AALE-RKARPQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIP 88
           A +E RKARPQ++  +NCPRCNSTNTKFCYYNNYSLTQPRYFCK CRRYWTEGGSLRN+P
Sbjct: 61  ATMETRKARPQEK--VNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVP 118

Query: 89  VGGGSRKNKRSSS-----SSKKLPDPATPPSHHPHQNPKIHDHGEDLN-LSFPAATTQGY 142
           VGG SRKNKRSS+     S+ KLPD   PP     Q P  +   +DLN LSFP      +
Sbjct: 119 VGGSSRKNKRSSTPLASPSNPKLPD-LNPPILFSSQIP--NKSNKDLNLLSFPVMQDHHH 175

Query: 143 RSFSELVQLPNIDNKSQIPISSSTTTTTTTTSSQQLSALELL--TGISSRGLNSFMPMPV 200
                                                ALELL   G+SSRG+N+F+P  +
Sbjct: 176 H------------------------------------ALELLRSNGVSSRGMNTFLPGQM 199

Query: 201 PDPNAIY--APGFP-MQDFKPT---LNFSLD-GLGSGYGSLH-HQSVQENN------GRL 246
            D N++   + GFP M D+K +   L+FS+D   G G+ +++ +Q  Q+NN       R+
Sbjct: 200 MDSNSVLYSSLGFPTMPDYKQSNNNLSFSIDHHQGIGHNTINSNQRAQDNNDDMNGASRV 259

Query: 247 LFPFEDLKQVSSTSDHMEQNREHGDSSGYWTGML---GGGSW 285
           LFPF D+K++SST+    Q + HG+++ YW GM    GG SW
Sbjct: 260 LFPFSDMKELSSTT----QEKSHGNNT-YWNGMFSNTGGSSW 296

Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZPY0|DOF25_ARATH Dof zinc finger protein DOF2.5 OS=Arabidopsis thaliana GN=DOF2.5 PE=2 SV=3

 Score =  176 bits (447), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 143/309 (46%), Positives = 181/309 (58%), Gaps = 55/309 (17%)

Query: 28  SAAALERKARPQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNI 87
           +A   ERKARPQ++  LNCPRCNSTNTKFCYYNNYSLTQPRYFCK CRRYWTEGGSLRN+
Sbjct: 66  TAVVAERKARPQEK--LNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNV 123

Query: 88  PVGGGSRKNKRSSSSSKKLPDPATPPSHHPHQNP------KIHDH----GEDLN-LSFPA 136
           PVGG SRKNKRSSSSS       T PS  P  NP      +IH+      +DLN LSFP 
Sbjct: 124 PVGGSSRKNKRSSSSSSSNI-LQTIPSSLPDLNPPILFSNQIHNKSKGSSQDLNLLSFPV 182

Query: 137 ATTQGYR--SFSELVQLPNIDNKSQI-----PISSSTTTTTTTTSSQQLSALELLTGISS 189
              Q +     S+ +Q+P ++    I     P SSS+   ++++    L  L     +SS
Sbjct: 183 MQDQHHHHVHMSQFLQMPKMEGNGNITHQQQPSSSSSVYGSSSSPVSALELLRTGVNVSS 242

Query: 190 R-GLN-SFMPM-PVPDPNAIY--APGFP-MQDFKPT-LNFSLDGLGSGYGS------LHH 236
           R G+N SFMP   + D N +   + GFP M D+KP+ L+FS D  G G+ S      LH 
Sbjct: 243 RSGINSSFMPSGSMMDSNTVLYTSSGFPTMVDYKPSNLSFSTDHQGLGHNSNNRSEALHS 302

Query: 237 QSVQENNGRLLFPFED-LKQVSST------SDHMEQNREHG---------DSSGYWTGML 280
              Q+  GR+LFPF D +K++SS+       D  +Q + HG          ++GYW+GM 
Sbjct: 303 DHHQQ--GRVLFPFGDQMKELSSSITQEVDHDDNQQQKSHGNNNNNNNSSPNNGYWSGMF 360

Query: 281 ---GGGSWW 286
              GGGS W
Sbjct: 361 STTGGGSSW 369

Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84TE9|DOF53_ARATH Dof zinc finger protein DOF5.3 OS=Arabidopsis thaliana GN=DOF5.3 PE=2 SV=1

 Score =  132 bits (332), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/204 (44%), Positives = 115/204 (56%), Gaps = 26/204 (12%)

Query: 19  VTNTCPKPASAAALERKARPQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYW 78
           + N   KP+ A A+ R   P  E AL CPRC+STNTKFCYYNNYSLTQPRYFCK+CRRYW
Sbjct: 32  LDNDQKKPSPATAVTRPQPP--ELALRCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYW 89

Query: 79  TEGGSLRNIPVGGGSRKNKRSSSSSKKLPDPATPPSHHPHQNPKIHDHGEDLNLSFPAAT 138
           T+GG+LRNIPVGGG RKNKRS+SS+ +       P+ H   + K+          F AA 
Sbjct: 90  TKGGTLRNIPVGGGCRKNKRSTSSAARSLRTTPEPASH---DGKV----------FSAAG 136

Query: 139 TQGYRSFSELVQLP---NIDNKSQIPISSSTTTTTTTTSSQQLSALELLTGISSRGLNSF 195
             GY S +E + L     + NK Q P SSS     +   S   S +E + G S +  N+ 
Sbjct: 137 FNGY-SNNEHIDLSLAFALLNK-QHPGSSSQLGFHSELGSSHQSDMEGMFGTSQQKENAT 194

Query: 196 MPM-----PVPDPNAIYAPGFPMQ 214
                    + DP+ +   GFP Q
Sbjct: 195 YAFGNGSSGLGDPSRVLW-GFPWQ 217

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M161|DOF41_ARATH Dof zinc finger protein DOF4.1 OS=Arabidopsis thaliana GN=DOF4.1 PE=2 SV=2

 Score =  129 bits (325), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/268 (37%), Positives = 129/268 (48%), Gaps = 54/268 (20%)

Query: 36  ARPQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRK 95
            RPQ+ +  NCPRCNS+NTKFCYYNNYSL QPRY CK+CRRYWTEGGSLRN+PVGGGSRK
Sbjct: 62  TRPQEPR--NCPRCNSSNTKFCYYNNYSLAQPRYLCKSCRRYWTEGGSLRNVPVGGGSRK 119

Query: 96  NKR-------SSSSSKKLPDPATPP-----SHHPHQNPKIHDHGEDLNLSFPAATTQGYR 143
           NK+       +SSS+K LPD   PP     S       K H +  DL+LSF +       
Sbjct: 120 NKKLPFPNSSTSSSTKNLPD-LNPPFVFTSSASSSNPSKTHQNNNDLSLSFSS------- 171

Query: 144 SFSELVQLPNIDNKSQIPISSSTTTTTTTTSSQQLSALELLTGISSRGLNSFMPMPVPDP 203
                   P  D ++Q      +    T   +    A                PM +   
Sbjct: 172 --------PMQDKRAQGHYGHFSEQVVTGGQNCLFQA----------------PMGMIQF 207

Query: 204 NAIYAPGFPMQDFKPTLNFSLDGLGSGYGSLHHQSVQENNGRLLFPF---EDLKQVSSTS 260
              Y    P    K  L FSLD      G+  +  V E   ++++P+   ED +Q     
Sbjct: 208 RQEYDHEHP----KKNLGFSLDRNEEEIGNHDNFVVNEEGSKMMYPYGDHEDRQQHHHVR 263

Query: 261 -DHMEQNREHGDSSGYWTGMLGGGSWWG 287
            D   + RE G S+  W+G++ GG   G
Sbjct: 264 HDDGNKKREGGSSNELWSGIILGGDSGG 291

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LE43|DOF21_ARATH Dof zinc finger protein DOF2.1 OS=Arabidopsis thaliana GN=DOF2.1 PE=2 SV=2

 Score =  129 bits (324), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 66/110 (60%), Positives = 78/110 (70%), Gaps = 13/110 (11%)

Query: 42  QALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSS 101
           +A NCPRC S NTKFCYYNNYSL+QPRYFCK+CRRYWT+GG+LRN+PVGGG R+NKRSSS
Sbjct: 46  EAQNCPRCESPNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRRNKRSSS 105

Query: 102 SSKKLPDPATPPSHH--PHQNPKI---------HDHGEDLNLSFPAATTQ 140
           S+    +     + H  P QNP I         +DH  DLNL+F  AT Q
Sbjct: 106 SAFSKNNNNKSINFHTDPLQNPLITGMPPSSFGYDHSIDLNLAF--ATLQ 153

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|O24463|PBF_MAIZE Dof zinc finger protein PBF OS=Zea mays GN=PBF PE=1 SV=1

 Score =  128 bits (321), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 65/126 (51%), Positives = 81/126 (64%), Gaps = 10/126 (7%)

Query: 26  PASAAALERKARPQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLR 85
           P    + ERK RPQ  +AL CPRC+S NTKFCYYNNYS++QPRYFCK CRRYWT GG+LR
Sbjct: 42  PQIGGSGERKPRPQLPEALKCPRCDSNNTKFCYYNNYSMSQPRYFCKACRRYWTHGGTLR 101

Query: 86  NIPVGGGSRKNKRSS---------SSSKKLPDPATPPSHHPHQNPKIHDHGEDL-NLSFP 135
           N+P+GGG RKNK +S         SSS     P +P ++    N  I+ H   + N++ P
Sbjct: 102 NVPIGGGCRKNKHASRFVLGSHTSSSSSATYAPLSPSTNASSSNMSINKHMMMVPNMTMP 161

Query: 136 AATTQG 141
             TT G
Sbjct: 162 TPTTMG 167

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. May enhance the DNA binding of the bZIP transcription factor Opaque-2 to O2 binding site elements.

Zea mays (taxid: 4577)

>sp|Q9M2U1|DOF36_ARATH Dof zinc finger protein DOF3.6 OS=Arabidopsis thaliana GN=DOF3.6 PE=1 SV=2

 Score =  127 bits (320), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 66/126 (52%), Positives = 77/126 (61%), Gaps = 22/126 (17%)

Query: 1   MDTAQWPQEIVVKPIEEIVTNTCPK---------PASAAALERKAR-------------P 38
            D+  W Q+     +E + T+  P          P S  A   +AR             P
Sbjct: 11  FDSQNWQQQGNQHQLECVTTDQNPNNYLRQLSSPPTSQVAGSSQARVNSMVERARIAKVP 70

Query: 39  QKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKR 98
             E ALNCPRC+STNTKFCY+NNYSLTQPR+FCKTCRRYWT GGSLRN+PVGGG R+NKR
Sbjct: 71  LPEAALNCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGSLRNVPVGGGFRRNKR 130

Query: 99  SSSSSK 104
           S S SK
Sbjct: 131 SKSRSK 136

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1E6|DOF32_ARATH Dof zinc finger protein DOF3.2 OS=Arabidopsis thaliana GN=DOF3.2 PE=2 SV=1

 Score =  126 bits (316), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/126 (53%), Positives = 83/126 (65%), Gaps = 15/126 (11%)

Query: 25  KPASAAALERKARPQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSL 84
           KP SA    R A P  EQ+L CPRC+STNTKFCYYNNYSL+QPRYFCK+CRRYWT+GG L
Sbjct: 26  KPLSAT---RPAPP--EQSLRCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGIL 80

Query: 85  RNIPVGGGSRKNKRSSSSSKKL---PDPAT-------PPSHHPHQNPKIHDHGEDLNLSF 134
           RNIP+GG  RK+KRSSS++K L   P+P         P +   + N  I +   +L L++
Sbjct: 81  RNIPIGGAYRKHKRSSSATKSLRTTPEPTMTHDGKSFPTASFGYNNNNISNEQMELGLAY 140

Query: 135 PAATTQ 140
                Q
Sbjct: 141 ALLNKQ 146

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
224072260	279	f-box family protein [Populus trichocarp	0.944	0.974	0.784	1e-112
225426210	288	PREDICTED: dof zinc finger protein DOF4.	0.954	0.954	0.734	1e-110
255555689	306	zinc finger protein, putative [Ricinus c	0.947	0.892	0.718	1e-108
302398779	315	DOF domain class transcription factor [M	0.958	0.876	0.654	2e-97
224058056	247	f-box family protein [Populus trichocarp	0.833	0.971	0.678	2e-96
356576606	302	PREDICTED: dof zinc finger protein DOF4.	0.951	0.907	0.629	1e-89
225455314	287	PREDICTED: dof zinc finger protein DOF4.	0.930	0.933	0.601	2e-84
356576608	293	PREDICTED: dof zinc finger protein DOF4.	0.920	0.904	0.618	2e-83
356535286	269	PREDICTED: dof zinc finger protein DOF4.	0.836	0.895	0.578	9e-82
193237589	275	transcription factor C2C2-Dof [Lotus jap	0.878	0.92	0.582	6e-77

>gi|224072260|ref|XP_002303678.1| f-box family protein [Populus trichocarpa] gi|222841110|gb|EEE78657.1| f-box family protein [Populus trichocarpa]

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 229/292 (78%), Positives = 249/292 (85%), Gaps = 20/292 (6%)

Query: 1   MDTAQWPQEIVVKPIEEIVTNTCPKPASAAALERKARPQKEQALNCPRCNSTNTKFCYYN 60
           MDTAQWPQEIVVKPIEEIVTNTCPKP    ALERKARPQKEQALNCPRCNSTNTKFCYYN
Sbjct: 1   MDTAQWPQEIVVKPIEEIVTNTCPKPP---ALERKARPQKEQALNCPRCNSTNTKFCYYN 57

Query: 61  NYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKR----SSSSSKKLPDPATPP--S 114
           NYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKR    SSSSSKKLPD  TP   S
Sbjct: 58  NYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSASSSSSSKKLPDLITPTSLS 117

Query: 115 HHPHQNPKIHDHGEDLNLSFPAATTQGYRSFSELVQLPNI-DNKSQIPISSSTTTTTTTT 173
               QNPKIH+ G+DLNL+FP+  TQ  RSFSEL+Q+P+I +N ++ PISSST+ +TTT+
Sbjct: 118 QTSTQNPKIHE-GQDLNLAFPS--TQSIRSFSELIQVPSINENNNKNPISSSTSASTTTS 174

Query: 174 SSQQLSALELLTGISSRGLNSFMPMPVPDPNAIYAPGFPMQDFKPTLNFSLDGLGSGYGS 233
              QLSALELLTGISSRGLNSF PMPV DP+ +Y   FP+ DFKPTLNFSLDGLGS YGS
Sbjct: 175 ---QLSALELLTGISSRGLNSF-PMPVQDPSTLYTSSFPLHDFKPTLNFSLDGLGSCYGS 230

Query: 234 LHHQSVQENNGRLLFPFEDLKQVSSTSDHMEQNREHGDSSGYWTGMLGGGSW 285
           L  Q VQE NGRLLFPFEDLKQVSST+D +E N+EHGDS+GYWTGMLGGGSW
Sbjct: 231 L--QGVQETNGRLLFPFEDLKQVSSTAD-IEHNKEHGDSTGYWTGMLGGGSW 279

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426210|ref|XP_002262703.1| PREDICTED: dof zinc finger protein DOF4.6-like [Vitis vinifera]

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 219/298 (73%), Positives = 248/298 (83%), Gaps = 23/298 (7%)

Query: 1   MDTAQWPQEIVVKPIEEIVTNTCPKPASAAALERKARPQKEQALNCPRCNSTNTKFCYYN 60
           MDTAQWPQEIVVKP+EEIVTNTCPKPA    LE++ARPQKEQALNCPRCNSTNTKFCYYN
Sbjct: 1   MDTAQWPQEIVVKPLEEIVTNTCPKPA----LEKRARPQKEQALNCPRCNSTNTKFCYYN 56

Query: 61  NYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKR---------SSSSSKKLPDPAT 111
           NYSL+QPRYFCK CRRYWTEGGSLRNIPVGGGSRKNKR         SS+SSKKLPD   
Sbjct: 57  NYSLSQPRYFCKACRRYWTEGGSLRNIPVGGGSRKNKRSSSSSSSSSSSASSKKLPD-LV 115

Query: 112 PP--SHHPHQNPKIHDHGEDLNLSFPAATTQGYRSFSELVQLPNID-NKSQIPISSSTTT 168
           PP  S    QNPKIH+ G+DLNLSFPAA  Q +RS SE +Q+P+I+ + +    SS +  
Sbjct: 116 PPGCSQSSAQNPKIHE-GQDLNLSFPAA--QDFRSVSEFMQMPSIENSNNNTNNSSKSHI 172

Query: 169 TTTTTSSQQLSALELLTGISSRGLNSFMPMPVPDPNAIYAPGFPMQDFKPTLNFSLDGLG 228
           T+T+++S  LSALELLTGI+SRGLNSFMPMP+PDPN +Y  GFPMQ+FKPTLNFSLDGLG
Sbjct: 173 TSTSSTSSHLSALELLTGITSRGLNSFMPMPIPDPNTVYTTGFPMQEFKPTLNFSLDGLG 232

Query: 229 SGYGSLHHQSVQ-ENNGRLLFPFEDLKQVSSTSDHMEQNREHGDSSGYWTGMLGGGSW 285
           SGYGS+  Q VQ  ++GRLLFPFEDLKQVSST+DH+EQ RE GDS+GYWTGMLGGGSW
Sbjct: 233 SGYGSI--QGVQGSSSGRLLFPFEDLKQVSSTADHIEQTREQGDSTGYWTGMLGGGSW 288

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555689|ref|XP_002518880.1| zinc finger protein, putative [Ricinus communis] gi|223541867|gb|EEF43413.1| zinc finger protein, putative [Ricinus communis]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 220/306 (71%), Positives = 244/306 (79%), Gaps = 33/306 (10%)

Query: 1   MDTAQWPQEIVVKPIEEIVTNTCPKPASAAA---LERKARPQKEQALNCPRCNSTNTKFC 57
           MDTAQWPQEI+VKPIEE+VTNTCPKPASAAA   LERK+RPQKEQALNCPRCNSTNTKFC
Sbjct: 1   MDTAQWPQEILVKPIEELVTNTCPKPASAAAAAALERKSRPQKEQALNCPRCNSTNTKFC 60

Query: 58  YYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKR----------------SSS 101
           YYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKR                SSS
Sbjct: 61  YYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSSSSSSSLSTCSSNSSSS 120

Query: 102 SSKKLPDPATP-------PSHHPHQNPKIHDHGEDLNLSFPAATTQGYRSFSELVQLPNI 154
           SSKKLPD  TP        + +P+ N      G DLNL+FP+  TQG RSFSEL+Q+P+I
Sbjct: 121 SSKKLPDLVTPQISLSQSSTQNPNNNSNKIPEGHDLNLAFPS--TQGIRSFSELIQVPSI 178

Query: 155 DNKSQIPISSSTTTTTTTTSSQQLSALELLTGISSRGLNSFMPMPVPDPNAIYAPGFPMQ 214
           +  +    + + ++T+ TT+S QLSALELLTGISSRGLNSFMPMPV DPN++Y  GFP+Q
Sbjct: 179 NEGNN---NKNPSSTSNTTTSSQLSALELLTGISSRGLNSFMPMPVQDPNSVYTSGFPLQ 235

Query: 215 DFKPTLNFSLDGLGSGYGSLHHQSVQENNGRLLFPFEDLKQVSSTSDHMEQNREHGDSSG 274
           DFKPTLNFSLDGLGSGYGSL  Q VQE  GRLLFPFEDLKQVSSTS  +EQNRE GDS+G
Sbjct: 236 DFKPTLNFSLDGLGSGYGSL--QGVQETGGRLLFPFEDLKQVSSTSTDIEQNREQGDSAG 293

Query: 275 YWTGML 280
           YWTGML
Sbjct: 294 YWTGML 299

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398779|gb|ADL36684.1| DOF domain class transcription factor [Malus x domestica]

 Score =  361 bits (926), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 212/324 (65%), Positives = 235/324 (72%), Gaps = 48/324 (14%)

Query: 1   MDTAQWPQEIVVKPIEEIVTNTCPKPASAAALERKARPQKEQALNCPRCNSTNTKFCYYN 60
           MDTAQWPQ IVVKPI+EIVTN+CPKPA+A  LERKARPQKEQALNCPRCNSTNTKFCYYN
Sbjct: 1   MDTAQWPQGIVVKPIDEIVTNSCPKPAAANNLERKARPQKEQALNCPRCNSTNTKFCYYN 60

Query: 61  NYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSS----------------SSK 104
           NYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSS                +SK
Sbjct: 61  NYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSSLNNSPSTTSNNSSSSSASK 120

Query: 105 KLPDPATPPSHHPHQNPKIHDHGEDLNLSFPAATTQGYRS-------------FSELVQL 151
           +LPD         HQNPKI +  +DLNL+FP +T Q +R+             F      
Sbjct: 121 RLPDLI-------HQNPKI-NQSQDLNLTFP-STNQDFRTIISDHLLNHHHQQFPNNNIN 171

Query: 152 PNIDNKSQIPI-SSSTTTTTTTTSSQQLSALELLTGISSRGLNSFMPMPV-PDP----NA 205
               NK Q  I SSS T+TTTTT++  LSALELLTG++SRGLNSFMPMPV  DP    N 
Sbjct: 172 NENTNKQQNHISSSSPTSTTTTTTTSHLSALELLTGLTSRGLNSFMPMPVSSDPNNNSNT 231

Query: 206 IYA--PGF--PMQDFKPTLNFSLDGLGSGYGSLHHQSVQENNGRLLFPFEDLKQVSSTSD 261
           +Y    G   PMQDFKPTLNFS+DGLGSGYGSL    VQE++GRLLFPFEDLKQ  S   
Sbjct: 232 VYNSPSGLINPMQDFKPTLNFSIDGLGSGYGSLQGHHVQESSGRLLFPFEDLKQAPSGGG 291

Query: 262 HMEQNREHGDSSGYWTGMLGGGSW 285
             E+N+EHGDS+GYWTGMLGGGSW
Sbjct: 292 INEENKEHGDSAGYWTGMLGGGSW 315

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058056|ref|XP_002299441.1| f-box family protein [Populus trichocarpa] gi|222846699|gb|EEE84246.1| f-box family protein [Populus trichocarpa]

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 198/292 (67%), Positives = 216/292 (73%), Gaps = 52/292 (17%)

Query: 1   MDTAQWPQEIVVKPIEEIVTNTCPKPASAAALERKARPQKEQALNCPRCNSTNTKFCYYN 60
           MDTAQWPQEIVVKPIEEIV NTC KP    ALERK RPQKEQALNCPRCNSTNTKFCYYN
Sbjct: 1   MDTAQWPQEIVVKPIEEIVVNTCSKPP---ALERKVRPQKEQALNCPRCNSTNTKFCYYN 57

Query: 61  NYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSSSS----KKLPDPATPP--S 114
           NYSLTQPRYFCKTCRRYWTEGGSLR+IPVGGGSRKNKRSS+SS    KKLPD  +PP  S
Sbjct: 58  NYSLTQPRYFCKTCRRYWTEGGSLRSIPVGGGSRKNKRSSASSSSSSKKLPDLISPPTLS 117

Query: 115 HHPHQNPKIHDHGEDLNLSFPAATTQGYRSFSELVQLPNIDNKSQIPISSSTTTTTTTTS 174
               +N KIH+ G+DLNL+FP+  TQG R+                              
Sbjct: 118 QTSTENHKIHE-GQDLNLAFPS--TQGIRT------------------------------ 144

Query: 175 SQQLSALELLTGISSRGLNSFMPMPV-PDPNAIYAPGFPMQDFKPTLNFSLDGLGSGYGS 233
                 LELLTGISSRGLNSF PMPV  DP+ +Y  GFP+QDFKPTL+FSLDGLGSGYG 
Sbjct: 145 ------LELLTGISSRGLNSF-PMPVHQDPSTLYPSGFPLQDFKPTLSFSLDGLGSGYGD 197

Query: 234 LHHQSVQENNGRLLFPFEDLKQVSSTSDHMEQNREHGDSSGYWTGMLGGGSW 285
           L  Q V E NGRLLFPFEDLKQ  S++  +EQN+EHGDS+GYWTGMLGGGSW
Sbjct: 198 L--QGVHETNGRLLFPFEDLKQQVSSTADIEQNKEHGDSTGYWTGMLGGGSW 247

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576606|ref|XP_003556421.1| PREDICTED: dof zinc finger protein DOF4.6-like isoform 1 [Glycine max]

 Score =  335 bits (859), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 197/313 (62%), Positives = 234/313 (74%), Gaps = 39/313 (12%)

Query: 1   MDTAQWPQEIVVKPIEEIV-TNTCPKPASAAALERKARPQKEQALNCPRCNSTNTKFCYY 59
           MDTAQWPQE+VVKPIE+IV TNTCPK     A+E K RPQKEQA+NCPRC+S NTKFCYY
Sbjct: 1   MDTAQWPQEMVVKPIEDIVVTNTCPK-----AVESKPRPQKEQAINCPRCHSINTKFCYY 55

Query: 60  NNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSSS---------------SK 104
           NNYSLTQPRYFCKTCRRYWTEGG+LRNIPVGGGSRKNKRSS+S                K
Sbjct: 56  NNYSLTQPRYFCKTCRRYWTEGGTLRNIPVGGGSRKNKRSSASCSTPNNSHNNNNSTNKK 115

Query: 105 KLPDPA-TPP----SHHPHQNPKIHDHGEDLNLSFPAATTQGYRSFSELVQ---LPNIDN 156
            L D   TPP    + +P+ N  IH  G+DLNL+FP++T   +R  SELVQ     N  +
Sbjct: 116 LLSDLVITPPTLSHTQNPNSNNAIH-QGQDLNLAFPSSTPD-FRKISELVQQNNNNNNSS 173

Query: 157 KSQIPISSSTTTTTTTTSSQQLSALELLTGI---SSRGLNSFMPMPVP-DPNAIYAPGFP 212
            + +  S+S+++TTTTTS+  LSALELLTGI   SS GL SFMP+PVP DPN+IY  GFP
Sbjct: 174 NNSMSASASSSSTTTTTSTSHLSALELLTGITSSSSAGLTSFMPVPVPSDPNSIYTCGFP 233

Query: 213 MQDFKPTLNFSLDGLGSGYGSLHHQSVQENNGRLLFPFEDLKQVSSTSDHMEQNREHGDS 272
           +QDFKPTLNFSLDG+G+GY SL  Q+VQ  +GRLLFP +DL+QVSS++      ++ GDS
Sbjct: 234 LQDFKPTLNFSLDGIGNGYTSL--QNVQ--SGRLLFPSDDLRQVSSSTITTMDQKQQGDS 289

Query: 273 SGYWTGMLGGGSW 285
           +GYWTGMLGGGSW
Sbjct: 290 TGYWTGMLGGGSW 302

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455314|ref|XP_002275610.1| PREDICTED: dof zinc finger protein DOF4.6-like [Vitis vinifera]

 Score =  318 bits (814), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 183/304 (60%), Positives = 212/304 (69%), Gaps = 36/304 (11%)

Query: 1   MDTAQWPQEI-VVKPIEEIVTNTCPKPASAAALERKARPQKEQALNCPRCNSTNTKFCYY 59
           MDTAQWPQ I VVKP+E          +S    ER+ARPQK+QALNCPRCNSTNTKFCYY
Sbjct: 1   MDTAQWPQGIGVVKPME----------SSGPVAERRARPQKDQALNCPRCNSTNTKFCYY 50

Query: 60  NNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKR----------SSSSSKKLPD- 108
           NNYSL+QPRYFCKTCRRYWTEGGSLRN+PVGGGSRKNKR           +SS K LPD 
Sbjct: 51  NNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSTSSSSSSSSPASSKKLLPDH 110

Query: 109 --PATPPSH--HPHQNPKIHDHGEDLNLSFPAATTQGYRSFSELVQLP-NIDNKSQIPIS 163
              +TPP       QNPKIH+ G+DLNL+FP        S SE   L  N D+K  +   
Sbjct: 111 LITSTPPGFPSSASQNPKIHE-GQDLNLAFPPPPEDYNNSISEFADLSYNGDSKPHL--- 166

Query: 164 SSTTTTTTTTSSQQLSALELL--TGISSRGLNSFMPMPVPDPNAIYAPGFPMQDFKPTLN 221
               T ++++S   LSA+ELL  TGI+SRGL SFMPM V D N+IY+ GFP+Q+FKPTLN
Sbjct: 167 -QNPTPSSSSSHHHLSAMELLKSTGIASRGLGSFMPMSVSDSNSIYSSGFPLQEFKPTLN 225

Query: 222 FSLDGLGSGYGSLHHQSVQENNGRLLFPFEDLKQVSSTSDHMEQNREHGDSSGYWTGMLG 281
           FSLDG  SGYGSL  Q VQE+  RLLFP EDLKQVS+T++  +     GDS+GYW GMLG
Sbjct: 226 FSLDGFQSGYGSL--QGVQESGARLLFPLEDLKQVSNTTEFEQSRGVQGDSAGYWNGMLG 283

Query: 282 GGSW 285
           GGSW
Sbjct: 284 GGSW 287

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576608|ref|XP_003556422.1| PREDICTED: dof zinc finger protein DOF4.6-like isoform 2 [Glycine max]

 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 188/304 (61%), Positives = 225/304 (74%), Gaps = 39/304 (12%)

Query: 10  IVVKPIEEIV-TNTCPKPASAAALERKARPQKEQALNCPRCNSTNTKFCYYNNYSLTQPR 68
           +VVKPIE+IV TNTCPK     A+E K RPQKEQA+NCPRC+S NTKFCYYNNYSLTQPR
Sbjct: 1   MVVKPIEDIVVTNTCPK-----AVESKPRPQKEQAINCPRCHSINTKFCYYNNYSLTQPR 55

Query: 69  YFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSSS---------------SKKLPDPA-TP 112
           YFCKTCRRYWTEGG+LRNIPVGGGSRKNKRSS+S                K L D   TP
Sbjct: 56  YFCKTCRRYWTEGGTLRNIPVGGGSRKNKRSSASCSTPNNSHNNNNSTNKKLLSDLVITP 115

Query: 113 P----SHHPHQNPKIHDHGEDLNLSFPAATTQGYRSFSELVQ---LPNIDNKSQIPISSS 165
           P    + +P+ N  IH  G+DLNL+FP++T   +R  SELVQ     N  + + +  S+S
Sbjct: 116 PTLSHTQNPNSNNAIH-QGQDLNLAFPSSTPD-FRKISELVQQNNNNNNSSNNSMSASAS 173

Query: 166 TTTTTTTTSSQQLSALELLTGI---SSRGLNSFMPMPVP-DPNAIYAPGFPMQDFKPTLN 221
           +++TTTTTS+  LSALELLTGI   SS GL SFMP+PVP DPN+IY  GFP+QDFKPTLN
Sbjct: 174 SSSTTTTTSTSHLSALELLTGITSSSSAGLTSFMPVPVPSDPNSIYTCGFPLQDFKPTLN 233

Query: 222 FSLDGLGSGYGSLHHQSVQENNGRLLFPFEDLKQVSSTSDHMEQNREHGDSSGYWTGMLG 281
           FSLDG+G+GY SL  Q+VQ  +GRLLFP +DL+QVSS++      ++ GDS+GYWTGMLG
Sbjct: 234 FSLDGIGNGYTSL--QNVQ--SGRLLFPSDDLRQVSSSTITTMDQKQQGDSTGYWTGMLG 289

Query: 282 GGSW 285
           GGSW
Sbjct: 290 GGSW 293

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535286|ref|XP_003536179.1| PREDICTED: dof zinc finger protein DOF4.6 [Glycine max]

 Score =  309 bits (792), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 181/313 (57%), Positives = 209/313 (66%), Gaps = 72/313 (23%)

Query: 1   MDTAQWPQEIVVKPIEEIV-TNTCPKPASAAALERKARPQKEQALNCPRCNSTNTKFCYY 59
           MDTAQWPQE+VVKPIE+IV TNT    A+  ++ERK RPQKEQA+NCPRC+S NTKFCYY
Sbjct: 1   MDTAQWPQEMVVKPIEDIVVTNTTCTKAAVGSVERKPRPQKEQAINCPRCHSINTKFCYY 60

Query: 60  NNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSSS-------------SKKL 106
           NNYSLTQPRYFCKTCRRYWTEGG+LRNIPVGGGSRKNKRSS+S             +KKL
Sbjct: 61  NNYSLTQPRYFCKTCRRYWTEGGTLRNIPVGGGSRKNKRSSASCSNNSHHNDNNSTNKKL 120

Query: 107 PDP--ATPPS-HHPHQNPKIHDH-----GEDLNLSFPAATTQGYRSFSELVQLPNIDNKS 158
                 TPP+  H  QNPK +D+     G+DLNL+FP+ T                    
Sbjct: 121 SADLVITPPTLSHTTQNPKSNDNSIIHQGQDLNLAFPSTT-------------------- 160

Query: 159 QIPISSSTTTTTTTTSSQQLSALELLTGI----SSRGLNSFMPMPVP-DPNAIYAPGFPM 213
                              LSALELLTGI    S+    SFMP+PVP +PN+IY  GFP+
Sbjct: 161 ------------------NLSALELLTGITSSSSTGLSTSFMPIPVPSNPNSIYTCGFPL 202

Query: 214 QDFKP-TLNFSLDGLGSGYGSLHHQSVQENNGRLLFPFEDLKQVSSTSDHMEQNREHGDS 272
           QDFKP TLNFSLDG+G GY SL +     + GRLLFPFEDLKQVSST+  M Q ++ GDS
Sbjct: 203 QDFKPGTLNFSLDGIGKGYTSLQN----VHGGRLLFPFEDLKQVSSTTT-MNQTQQ-GDS 256

Query: 273 SGYWTGMLGGGSW 285
           +GYWTGMLGGGSW
Sbjct: 257 TGYWTGMLGGGSW 269

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|193237589|dbj|BAG50071.1| transcription factor C2C2-Dof [Lotus japonicus]

 Score =  293 bits (750), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 173/297 (58%), Positives = 201/297 (67%), Gaps = 44/297 (14%)

Query: 12  VKPIEEIV-TNTCPKPASAAALERKARPQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYF 70
           +KPIE IV TNTCPKP S   + +KARPQKE+A+NCPRC+S NTKFCYYNNYSLTQPRYF
Sbjct: 1   MKPIEGIVVTNTCPKPESMLEI-KKARPQKEEAVNCPRCHSINTKFCYYNNYSLTQPRYF 59

Query: 71  CKTCRRYWTEGGSLRNIPVGGGSRKNKR---------SSSSSKKLPDPATPPSHHPHQNP 121
           CKTCRRYWTEGGSLRNIPVGGGSRKNK          S++S+K LPD  TP       NP
Sbjct: 60  CKTCRRYWTEGGSLRNIPVGGGSRKNKHRSNSVISTPSTTSNKNLPDLVTPTC---TPNP 116

Query: 122 KIHDHGEDLNLSFPAATTQGYRSFSELVQLPNIDNKSQIPISSSTTTTTTTTSSQQLSAL 181
           KI + G+DLNL FP          SELV   N          +++  +TTT+S+  LSAL
Sbjct: 117 KIFNDGQDLNLGFP--------KISELVHQNN----------NTSFCSTTTSSTSHLSAL 158

Query: 182 ELLTGIS-----SRGLN-SFMPMPV-PDPNAIYAP-GFPMQDFKPTLNFSLDGLGSGYGS 233
            LLTGI+     SRGL  SFMP+PV  DPN +Y   GFPM DFKPTLNF+LDG GS Y S
Sbjct: 159 GLLTGITSSSSSSRGLQYSFMPVPVSADPNTVYTTCGFPMHDFKPTLNFTLDGNGSDYAS 218

Query: 234 LHHQSVQENNGRLLFPFEDLKQVSSTSDHMEQNRE----HGDSSGYWTGMLGGGSWW 286
                   + GR+LFPFEDLKQVSST+  M+ N +     GDS+GYW+GMLGGG  W
Sbjct: 219 FQGHVQDTSTGRVLFPFEDLKQVSSTTARMDHNNDKEVQQGDSAGYWSGMLGGGGSW 275

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
TAIR|locus:2134981	342	AT4G24060 [Arabidopsis thalian	0.513	0.432	0.575	1.1e-52
TAIR|locus:2019499	352	AT1G64620 [Arabidopsis thalian	0.513	0.420	0.547	3.3e-47
TAIR|locus:2079492	324	DAG1 "dof affecting germinatio	0.843	0.75	0.419	5.4e-47
TAIR|locus:2039959	369	DAG2 "DOF AFFECTING GERMINATIO	0.548	0.428	0.463	1.8e-42
TAIR|locus:2134658	294	AT4G00940 [Arabidopsis thalian	0.381	0.374	0.523	5.5e-32
TAIR|locus:2170753	372	HCA2 "HIGH CAMBIAL ACTIVITY2"	0.229	0.177	0.705	7.4e-27
TAIR|locus:2144030	257	TMO6 "TARGET OF MONOPTEROS 6"	0.322	0.361	0.593	3.2e-26
TAIR|locus:2056588	288	AT2G28510 [Arabidopsis thalian	0.361	0.361	0.504	5.9e-25
TAIR|locus:2085697	245	DOF6 "DOF transcription factor	0.302	0.355	0.576	3.3e-24
TAIR|locus:2181773	399	AT5G02460 [Arabidopsis thalian	0.236	0.170	0.695	5.3e-24

TAIR|locus:2134981 AT4G24060 [Arabidopsis thaliana (taxid:3702)]

 Score = 448 (162.8 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
 Identities = 92/160 (57%), Positives = 104/160 (65%)

Query:     1 MDTAQWPQEIVVKPIEEIVTNTCPKPAS---------AAALERKARPQKEQALNCPRCNS 51
             MDTAQWPQEIVVKP+EEIVTNTCPKP           +   ERKARP+K+QA+NCPRCNS
Sbjct:     1 MDTAQWPQEIVVKPLEEIVTNTCPKPQPQPLQPQQPPSVGGERKARPEKDQAVNCPRCNS 60

Query:    52 TNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGXXXXXXXXXXXXXLPDPAT 111
             TNTKFCYYNNYSLTQPRYFCK CRRYWTEGGSLRNIPVGGG             + +  +
Sbjct:    61 TNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPVGGGSRKNKRSHSSSSDISNNHS 120

Query:   112 PPSHHPHQNPKIHDHGEDL-NLSFPAATTQGYRSFSELVQ 150
               S  P     + DH   L ++S    T Q  + F E  Q
Sbjct:   121 D-STQPATKKHLSDHHHHLMSMSQQGLTGQNPK-FLETTQ 158

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2019499 AT1G64620 [Arabidopsis thaliana (taxid:3702)]

 Score = 428 (155.7 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
 Identities = 93/170 (54%), Positives = 104/170 (61%)

Query:     1 MDTAQWPQEIVVKPIEEIVTNTCPK-----PASAAALERKARPQKEQALNCPRCNSTNTK 55
             MDTA+WPQE VVKP+ EIVTNTC K     P+ A  +ERKARP+K+QALNCPRCNS NTK
Sbjct:     1 MDTAKWPQEFVVKPMNEIVTNTCLKQQSNPPSPATPVERKARPEKDQALNCPRCNSLNTK 60

Query:    56 FCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGXXXXXXXXX-XXXXLPDPA---- 110
             FCYYNNYSLTQPRYFCK CRRYWT GGSLRNIPVGGG               P  +    
Sbjct:    61 FCYYNNYSLTQPRYFCKDCRRYWTAGGSLRNIPVGGGVRKNKRSSSNSSSSSPSSSSSSK 120

Query:   111 --------TPPSHHPHQNPKIHDHGEDLNLSFPAAT-TQGYRSFSELVQL 151
                     TP    PH NPKI   GE         T +QG+ +  E+  L
Sbjct:   121 KPLFANNNTPTPPLPHLNPKI---GEAAATKVQDLTFSQGFGNAHEVKDL 167

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2079492 DAG1 "dof affecting germination 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 118/281 (41%), Positives = 156/281 (55%)

Query:    28 SAAALE-RKARPQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRN 86
             + A +E RKARPQ++  +NCPRCNSTNTKFCYYNNYSLTQPRYFCK CRRYWTEGGSLRN
Sbjct:    59 NTATMETRKARPQEK--VNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRN 116

Query:    87 IPVGGGXXXXXXXXXXXXXLPDPATPPSHHPHQ-NPKI-HDHGEDLNL-SFPAATTQGYR 143
             +PVGG                +P  P  + P   + +I +   +DLNL SFP      + 
Sbjct:   117 VPVGGSSRKNKRSSTPLASPSNPKLPDLNPPILFSSQIPNKSNKDLNLLSFPVMQDHHHH 176

Query:   144 SFSELVQLPNIDNKSQIPIXXXXXXXXXXXXXQQLSALELL--TGISSRGLNSFMPMPVP 201
               S    +P I+N +                   +SALELL   G+SSRG+N+F+P  + 
Sbjct:   177 GMSHFFHMPKIENNN--------TSSSIYASSSPVSALELLRSNGVSSRGMNTFLPGQMM 228

Query:   202 DPNAI-YAP-GFP-MQDFKPTLNFXXXXXXXXXXXXHH-----QSVQENN------GRLL 247
             D N++ Y+  GFP M D+K + N             H+     Q  Q+NN       R+L
Sbjct:   229 DSNSVLYSSLGFPTMPDYKQSNNNLSFSIDHHQGIGHNTINSNQRAQDNNDDMNGASRVL 288

Query:   248 FPFEDLKQVSSTSDHMEQNREHGDSSGYWTGML---GGGSW 285
             FPF D+K++SST+    Q + HG+++ YW GM    GG SW
Sbjct:   289 FPFSDMKELSSTT----QEKSHGNNT-YWNGMFSNTGGSSW 324

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009845 "seed germination" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009639 "response to red or far red light" evidence=IMP

TAIR|locus:2039959 DAG2 "DOF AFFECTING GERMINATION 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 1.8e-42, Sum P(2) = 1.8e-42
 Identities = 82/177 (46%), Positives = 98/177 (55%)

Query:    28 SAAALERKARPQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNI 87
             +A   ERKARPQ++  LNCPRCNSTNTKFCYYNNYSLTQPRYFCK CRRYWTEGGSLRN+
Sbjct:    66 TAVVAERKARPQEK--LNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNV 123

Query:    88 PVGGGXXXXXXXXXXXXXLPDPATPPSHHPHQNP------KIHDHG----EDLNL-SFPA 136
             PVGG                   T PS  P  NP      +IH+      +DLNL SFP 
Sbjct:   124 PVGGSSRKNKRSSSSSSS-NILQTIPSSLPDLNPPILFSNQIHNKSKGSSQDLNLLSFPV 182

Query:   137 ATTQGYRS--FSELVQLPNIDNKSQIPIXX--XXXXXXXXXXXQQLSALELL-TGIS 188
                Q +     S+ +Q+P ++    I                   +SALELL TG++
Sbjct:   183 MQDQHHHHVHMSQFLQMPKMEGNGNITHQQQPSSSSSVYGSSSSPVSALELLRTGVN 239

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009409 "response to cold" evidence=IMP

GO:0009416 "response to light stimulus" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

TAIR|locus:2134658 AT4G00940 [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 5.5e-32, Sum P(2) = 5.5e-32
 Identities = 68/130 (52%), Positives = 76/130 (58%)

Query:    37 RPQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGXXXX 96
             RPQ+ +  NCPRCNS+NTKFCYYNNYSL QPRY CK+CRRYWTEGGSLRN+PVGGG    
Sbjct:    63 RPQEPR--NCPRCNSSNTKFCYYNNYSLAQPRYLCKSCRRYWTEGGSLRNVPVGGGSRKN 120

Query:    97 -------XXXXXXXXXLPDPATPP----SHHPHQNP-KIHDHGEDLNLSFPAAT----TQ 140
                             LPD   PP    S     NP K H +  DL+LSF +       Q
Sbjct:   121 KKLPFPNSSTSSSTKNLPD-LNPPFVFTSSASSSNPSKTHQNNNDLSLSFSSPMQDKRAQ 179

Query:   141 G-YRSFSELV 149
             G Y  FSE V
Sbjct:   180 GHYGHFSEQV 189

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009691 "cytokinin biosynthetic process" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2170753 HCA2 "HIGH CAMBIAL ACTIVITY2" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 7.4e-27, Sum P(2) = 7.4e-27
 Identities = 48/68 (70%), Positives = 57/68 (83%)

Query:    27 ASAAALE--RKARPQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSL 84
             A+AA ++  R+ RP  +    CPRC ST+TKFCYYNNYSL+QPRYFCKTCRRYWT+GG+L
Sbjct:    54 AAAALMDGGRRLRPPHDHPQKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTL 113

Query:    85 RNIPVGGG 92
             RNIPVGGG
Sbjct:   114 RNIPVGGG 121

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0010067 "procambium histogenesis" evidence=IMP

GO:0010087 "phloem or xylem histogenesis" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2144030 TMO6 "TARGET OF MONOPTEROS 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 57/96 (59%), Positives = 63/96 (65%)

Query:    21 NTCPKPASAAALERKARPQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTE 80
             N   KP+ A A+ R   P  E AL CPRC+STNTKFCYYNNYSLTQPRYFCK+CRRYWT+
Sbjct:    34 NDQKKPSPATAVTRPQPP--ELALRCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTK 91

Query:    81 GGSLRNIPVGGG-XXXXXXXXXXXXXLPDPATPPSH 115
             GG+LRNIPVGGG              L     P SH
Sbjct:    92 GGTLRNIPVGGGCRKNKRSTSSAARSLRTTPEPASH 127

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0048364 "root development" evidence=IEP

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2056588 AT2G28510 [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 59/117 (50%), Positives = 71/117 (60%)

Query:    42 QALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGXXXXXXXXX 101
             +A NCPRC S NTKFCYYNNYSL+QPRYFCK+CRRYWT+GG+LRN+PVGGG         
Sbjct:    46 EAQNCPRCESPNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRRNKRSSS 105

Query:   102 XXXXLPDPATPPSHH--PHQNPKI---------HDHGEDLNLSFPAATTQGYRSFSE 147
                   +     + H  P QNP I         +DH  DLNL+F  AT Q +   S+
Sbjct:   106 SAFSKNNNNKSINFHTDPLQNPLITGMPPSSFGYDHSIDLNLAF--ATLQKHHLSSQ 160

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA

TAIR|locus:2085697 DOF6 "DOF transcription factor 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 53/92 (57%), Positives = 59/92 (64%)

Query:    25 KPASAAALERKARPQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSL 84
             KP SA    R A P  EQ+L CPRC+STNTKFCYYNNYSL+QPRYFCK+CRRYWT+GG L
Sbjct:    26 KPLSAT---RPAPP--EQSLRCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGIL 80

Query:    85 RNIPVGGGXXXXXXXXXXXXXLPDPATPPSHH 116
             RNIP+GG              L     P   H
Sbjct:    81 RNIPIGGAYRKHKRSSSATKSLRTTPEPTMTH 112

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2181773 AT5G02460 [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 48/69 (69%), Positives = 55/69 (79%)

Query:    25 KPASAAALERKAR-PQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGS 83
             +P S A   R A  P  E AL CPRC+STNTKFCY+NNYSLTQPR+FCK CRRYWT GG+
Sbjct:    75 RPGSMAERARLANIPLPETALKCPRCDSTNTKFCYFNNYSLTQPRHFCKACRRYWTRGGA 134

Query:    84 LRNIPVGGG 92
             LR++PVGGG
Sbjct:   135 LRSVPVGGG 143

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_LG_I000288 f-box family protein (244 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	288
pfam02701	63	pfam02701, zf-Dof, Dof domain, zinc finger	2e-41

>gnl|CDD|111583 pfam02701, zf-Dof, Dof domain, zinc finger

 Score =  136 bits (345), Expect = 2e-41
 Identities = 49/63 (77%), Positives = 56/63 (88%)

Query: 39  QKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKR 98
           + ++AL CPRC+S NTKFCYYNNY+L QPRYFCK CRRYWT GG+LRN+PVGGG RKNKR
Sbjct: 1   KPDKALKCPRCDSMNTKFCYYNNYNLNQPRYFCKNCRRYWTAGGALRNVPVGGGRRKNKR 60

Query: 99  SSS 101
           SSS
Sbjct: 61  SSS 63

The Dof domain is a zinc finger DNA-binding domain, that shows resemblance to the Cys2 zinc finger. Length = 63

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	288
PF02701	63	zf-Dof: Dof domain, zinc finger; InterPro: IPR0038	100.0
TIGR02159	146	PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subu	92.96
COG3677	129	Transposase and inactivated derivatives [DNA repli	92.57
PF12760	46	Zn_Tnp_IS1595: Transposase zinc-ribbon domain; Int	92.56
PF03811	36	Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR0	91.35
smart00440	40	ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding mo	88.31
PF01096	39	TFIIS_C: Transcription factor S-II (TFIIS); InterP	85.52

>PF02701 zf-Dof: Dof domain, zinc finger; InterPro: IPR003851 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=100.00  E-value=2.2e-37  Score=232.88  Aligned_cols=62  Identities=82%  Similarity=1.588  Sum_probs=59.3

Q ss_pred             ccccCCCCCCCCCCcceeeeccccCCCCchhccccccccccCCccccccCCCCcCCCCCCCC
Q 023047           40 KEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSS  101 (288)
Q Consensus        40 ~~~~~~CPRc~S~~tkfcyynNy~~~qpR~~Ck~CrRywT~GG~lRnvPvGgg~RK~k~sss  101 (288)
                      +++.++||||+|+||||||||||+++||||||++|+||||+||+|||||||||+||+|+++|
T Consensus         2 ~~~~~~CPRC~S~nTKFcYyNNy~~~QPR~~Ck~C~rywT~GG~lRnVPvggg~Rk~k~~~s   63 (63)
T PF02701_consen    2 PEQPLPCPRCDSTNTKFCYYNNYNLSQPRYFCKSCRRYWTHGGTLRNVPVGGGCRKNKRSSS   63 (63)
T ss_pred             CccCCCCCCcCCCCCEEEeecCCCCCCcchhhHHHHHHHHhcceecCCccCCCcccCCcCCC
Confidence            45679999999999999999999999999999999999999999999999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry consists of proteins containing a Dof domain, which is a zinc finger DNA-binding domain that shows resemblance to the Cys2 zinc finger, although it has a longer putative loop where an extra Cys residue is conserved []. AOBP, a DNA-binding protein in pumpkin (Cucurbita maxima), contains a 52 amino acid Dof domain, which is highly conserved in several DNA-binding proteins of higher plants. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent

>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit

Probab=92.96  E-value=0.04  Score=47.62  Aligned_cols=34  Identities=26%  Similarity=0.828  Sum_probs=26.8

Q ss_pred             cCCCCCCCCCCcceeeeccc--cCCCCchhcccccccc
Q 023047           43 ALNCPRCNSTNTKFCYYNNY--SLTQPRYFCKTCRRYW   78 (288)
Q Consensus        43 ~~~CPRc~S~~tkfcyynNy--~~~qpR~~Ck~CrRyw   78 (288)
                      ...||||.|.+|+..  +.+  +.++.-|.|++|+.=+
T Consensus       105 ~~~cp~c~s~~t~~~--s~fg~t~cka~~~c~~c~epf  140 (146)
T TIGR02159       105 SVQCPRCGSADTTIT--SIFGPTACKALYRCRACKEPF  140 (146)
T ss_pred             CCcCCCCCCCCcEee--cCCCChhhHHHhhhhhhCCcH
Confidence            479999999999964  555  4457779999998643

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.

>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=92.57  E-value=0.08  Score=44.87  Aligned_cols=36  Identities=36%  Similarity=0.756  Sum_probs=28.3

Q ss_pred             cCCCCCCCCCCcceeeeccccCCCCchhcccccccccc
Q 023047           43 ALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTE   80 (288)
Q Consensus        43 ~~~CPRc~S~~tkfcyynNy~~~qpR~~Ck~CrRywT~   80 (288)
                      ...||+|.+.+  +-=+.-+.....||.|++|++-|+.
T Consensus        30 ~~~cP~C~s~~--~~k~g~~~~~~qRyrC~~C~~tf~~   65 (129)
T COG3677          30 KVNCPRCKSSN--VVKIGGIRRGHQRYKCKSCGSTFTV   65 (129)
T ss_pred             cCcCCCCCccc--eeeECCccccccccccCCcCcceee
Confidence            37899999999  3335555555999999999999874

>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc

Probab=92.56  E-value=0.089  Score=36.85  Aligned_cols=27  Identities=44%  Similarity=1.006  Sum_probs=22.3

Q ss_pred             CCCCCCCCCCcceeeeccccCCCCchhcccccc
Q 023047           44 LNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRR   76 (288)
Q Consensus        44 ~~CPRc~S~~tkfcyynNy~~~qpR~~Ck~CrR   76 (288)
                      ..||+|.+.  ++..+.+    +.+|.|+.|++
T Consensus        19 ~~CP~Cg~~--~~~~~~~----~~~~~C~~C~~   45 (46)
T PF12760_consen   19 FVCPHCGST--KHYRLKT----RGRYRCKACRK   45 (46)
T ss_pred             CCCCCCCCe--eeEEeCC----CCeEECCCCCC
Confidence            679999998  6655655    78999999986

It may be a zinc-binding beta ribbon domain that could bind DNA.

>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases

Probab=91.35  E-value=0.12  Score=35.58  Aligned_cols=31  Identities=45%  Similarity=0.881  Sum_probs=21.6

Q ss_pred             cCCCCCCCCCCcceeeeccccCC-CCchhccccc
Q 023047           43 ALNCPRCNSTNTKFCYYNNYSLT-QPRYFCKTCR   75 (288)
Q Consensus        43 ~~~CPRc~S~~tkfcyynNy~~~-qpR~~Ck~Cr   75 (288)
                      .+.||+|.+++.-  |=|-.+.. ..||+|++|+
T Consensus         5 ~v~CP~C~s~~~v--~k~G~~~~G~qryrC~~C~   36 (36)
T PF03811_consen    5 DVHCPRCQSTEGV--KKNGKSPSGHQRYRCKDCR   36 (36)
T ss_pred             eeeCCCCCCCCcc--eeCCCCCCCCEeEecCcCC
Confidence            4789999998721  23444333 5899999996

Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated

>smart00440 ZnF_C2C2 C2C2 Zinc finger

Probab=88.31  E-value=0.43  Score=33.00  Aligned_cols=37  Identities=30%  Similarity=0.823  Sum_probs=27.8

Q ss_pred             CCCCCCCCCCcceeeeccccCCCC---chhcccccccccc
Q 023047           44 LNCPRCNSTNTKFCYYNNYSLTQP---RYFCKTCRRYWTE   80 (288)
Q Consensus        44 ~~CPRc~S~~tkfcyynNy~~~qp---R~~Ck~CrRywT~   80 (288)
                      .+||+|...+.-|-..+-.+...|   -|.|.+|...|.+
T Consensus         1 ~~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~~~w~~   40 (40)
T smart00440        1 APCPKCGNREATFFQLQTRSADEPMTVFYVCTKCGHRWRE   40 (40)
T ss_pred             CcCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCCCEeCC
Confidence            379999977777665555655555   4999999999964

Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.

>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=85.52  E-value=0.56  Score=32.21  Aligned_cols=36  Identities=28%  Similarity=0.829  Sum_probs=24.1

Q ss_pred             CCCCCCCCCCcceeeeccccCCCCc---hhccccccccc
Q 023047           44 LNCPRCNSTNTKFCYYNNYSLTQPR---YFCKTCRRYWT   79 (288)
Q Consensus        44 ~~CPRc~S~~tkfcyynNy~~~qpR---~~Ck~CrRywT   79 (288)
                      .+||.|...+.-|=-.+..+...|-   |.|.+|..-|+
T Consensus         1 ~~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~~~wr   39 (39)
T PF01096_consen    1 IKCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCGHRWR   39 (39)
T ss_dssp             S--SSS-SSEEEEEEESSSSSSSSSEEEEEESSSTEEEE
T ss_pred             CCCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCCCeeC
Confidence            3799999987666555555555443   99999999985

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	288
1qyp_A	57	RNA polymerase II; transcription, RPB9, Zn ribbon,	80.02

>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1

Probab=80.02  E-value=0.96  Score=31.75  Aligned_cols=38  Identities=21%  Similarity=0.684  Sum_probs=25.5

Q ss_pred             cCCCCCCCCCCcceeeeccccCCCC---chhcccccccccc
Q 023047           43 ALNCPRCNSTNTKFCYYNNYSLTQP---RYFCKTCRRYWTE   80 (288)
Q Consensus        43 ~~~CPRc~S~~tkfcyynNy~~~qp---R~~Ck~CrRywT~   80 (288)
                      ..+||+|...+..|--.+-.+...|   .|.|..|.--|+.
T Consensus        15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~   55 (57)
T 1qyp_A           15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS   55 (57)
T ss_dssp             ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred             EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence            4789999984444333333333344   3999999999976

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	288
d1twfi2	72	RBP9 subunit of RNA polymerase II {Baker's yeast (	87.76
d1tfia_	50	Transcriptional factor SII, C-terminal domain {Hum	87.62

>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: RBP9 subunit of RNA polymerase II
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.76  E-value=0.16  Score=36.77  Aligned_cols=40  Identities=20%  Similarity=0.553  Sum_probs=30.9

Q ss_pred             CCCCCCCCCCcceeeeccccCCCCc---hhccccccccccCCc
Q 023047           44 LNCPRCNSTNTKFCYYNNYSLTQPR---YFCKTCRRYWTEGGS   83 (288)
Q Consensus        44 ~~CPRc~S~~tkfcyynNy~~~qpR---~~Ck~CrRywT~GG~   83 (288)
                      ..||+|...+.-|-+.+-.+..-|-   |.|..|.-.|+...+
T Consensus        24 ~~CpkCg~~~a~~~q~QtRsaDE~mT~Fy~C~~C~h~Wr~~~~   66 (72)
T d1twfi2          24 RECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQK   66 (72)
T ss_dssp             CCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECCTT
T ss_pred             CCCCCCCCCeEEEEEeecCccCCCceEEEEcCCCCCCcccccc
Confidence            7899999877776666655544443   999999999998654

>d1tfia_ g.41.3.1 (A:) Transcriptional factor SII, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcriptional factor SII, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.62  E-value=0.16  Score=34.63  Aligned_cols=37  Identities=22%  Similarity=0.675  Sum_probs=30.4

Q ss_pred             ccCCCCCCCCCCcceeeeccccCCCCc---hhcccccccc
Q 023047           42 QALNCPRCNSTNTKFCYYNNYSLTQPR---YFCKTCRRYW   78 (288)
Q Consensus        42 ~~~~CPRc~S~~tkfcyynNy~~~qpR---~~Ck~CrRyw   78 (288)
                      ..+.||+|.+.+..|--.+..+...|-   +.|..|..-|
T Consensus         8 ~~~~C~kC~~~~~~~~~~QtRSADEp~T~F~~C~~Cg~~W   47 (50)
T d1tfia_           8 DLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW   47 (50)
T ss_dssp             CCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEE
T ss_pred             CCEECCCCCCCccEEEEEEccCCCCCceEEEEccccCCee
Confidence            347999999998887777777777665   8999999988