Citrus Sinensis ID: 023057

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
Protein Sequence
MQRLLGARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQAPVR
Secondary Structure (PSIPRED)
cccccccccccccHHHcccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHccccEEEEEEHHHHHHHHHHHcccHHHHHHcccccccccEEEEEEcccccccccccccEEEEEEEccEEEEcccEEEEEccccccEEEEEEEccccccccccEEEEEcccccccccccccccccccccccccEEEccccccccccccccccHHHHHHccccccccHHccHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHcccccHHHHHHHHHHHHccccccccHHHccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHccHHHHHHHccHHHHHHHcHHHccccccEEEEccEccEcccHHHcccEEEEcccEEEEEEEEEEEEccccccEEEEEEEccHHHHHHcEEEEEEEcccccEEEcccccEcccccccEEEEEEEEEEEEHHHEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MQRLLGARSLCASFftkkqkhsaafsstsllfddtqLQFKESVGQFAreniapraanidqsnsfpqdVNLWKLMGnfnlhgitapqeygglglgylYHCIAMEEisrasgsvglsygahsnLCINQlvrhgspaqkdkylpklisgehvgalamsepnagsdvvgmkckadrvdggyiingnkmwctngpvAQTLVVYAKTDIKAGSKGITAFIIekgmpgfstaqkldklgmrgsdtCELVFEncfvpnenvlgqegkGVYVMMSGLDLERLVLaagplgimqapvr
Flexible Loop (DISEMBL)
MQRLLGARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIApraanidqsnsFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLaagplgimqapvr
Low Complexity Region (SEG)
MQRLLGARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEygglglgylyHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQAPVR
Disordered region (IsUnstruct)
********SLCASFFTK*******F**TSLLFDDTQLQFKESVGQFAR**I***********SFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGS****DKYLPKLISGEHVGALA*******SDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGI******
Disordered Region (DISOPRED)
**************************STSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQAPVR
Disordered Region (DISEMBL)
MQRLLGARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQAPVR
Disordered Region (DISPRO)
*QRLLGARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQAPVR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQRLLGARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQAPVR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	288	2.2.26 [Sep-21-2011]
Q9FS88	412	Isovaleryl-CoA dehydrogen	N/A	no	0.986	0.689	0.791	1e-136
Q9SWG0	409	Isovaleryl-CoA dehydrogen	yes	no	0.986	0.694	0.831	1e-128
Q9FS87	401	Isovaleryl-CoA dehydrogen	N/A	no	0.927	0.665	0.853	1e-126
Q5RBD5	423	Isovaleryl-CoA dehydrogen	yes	no	0.881	0.600	0.679	1e-100
Q9JHI5	424	Isovaleryl-CoA dehydrogen	yes	no	0.881	0.599	0.679	1e-100
P26440	423	Isovaleryl-CoA dehydrogen	yes	no	0.881	0.600	0.671	2e-99
P12007	424	Isovaleryl-CoA dehydrogen	yes	no	0.881	0.599	0.671	1e-98
Q3SZI8	426	Isovaleryl-CoA dehydrogen	yes	no	0.881	0.596	0.671	3e-98
P52042	379	Acyl-CoA dehydrogenase, s	yes	no	0.843	0.641	0.448	5e-53
P45857	379	Acyl-CoA dehydrogenase OS	yes	no	0.871	0.662	0.403	7e-53

>sp|Q9FS88|IVD1_SOLTU Isovaleryl-CoA dehydrogenase 1, mitochondrial OS=Solanum tuberosum GN=IVD1 PE=2 SV=1

 Score =  483 bits (1242), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 228/288 (79%), Positives = 254/288 (88%), Gaps = 4/288 (1%)

Query: 1   MQRLLGARSLCASF---FTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAAN 57
           M +L   RSL ++    F   Q   AAFS TSLL DDTQ QFKESV +FA+ENIAP A  
Sbjct: 1   MHKLFAVRSLSSAIAKNFKSLQNQQAAFS-TSLLLDDTQKQFKESVAKFAQENIAPYAEK 59

Query: 58  IDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYG 117
           ID++NSFP+++NLWKLMG+FNLHGITAP+EYGGL LGYLYHCIA+EEISRASG+V +SYG
Sbjct: 60  IDRTNSFPKEINLWKLMGDFNLHGITAPEEYGGLNLGYLYHCIALEEISRASGAVAVSYG 119

Query: 118 AHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGY 177
             SN+CINQLVR+G+P QK KYLPKLISG+H+GALAMSEPNAGSDVV MKC+ADRVDGGY
Sbjct: 120 VQSNVCINQLVRNGTPDQKQKYLPKLISGDHIGALAMSEPNAGSDVVSMKCRADRVDGGY 179

Query: 178 IINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSD 237
           ++NGNKMWCTNGPVA TL+VYAKTD  AGSKGITAFIIEK MPGFSTAQKLDKLGMRGSD
Sbjct: 180 VLNGNKMWCTNGPVANTLIVYAKTDTTAGSKGITAFIIEKEMPGFSTAQKLDKLGMRGSD 239

Query: 238 TCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQA 285
           TCELVFENCFVP ENVLGQEGKGVYV+MSGLDLERLVLAAGP+GIMQA
Sbjct: 240 TCELVFENCFVPKENVLGQEGKGVYVLMSGLDLERLVLAAGPVGIMQA 287

Solanum tuberosum (taxid: 4113)
EC: 1EC: .EC: 3EC: .EC: 8EC: .EC: 4

>sp|Q9SWG0|IVD_ARATH Isovaleryl-CoA dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=IVD PE=1 SV=2

 Score =  457 bits (1175), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 237/285 (83%), Positives = 260/285 (91%), Gaps = 1/285 (0%)

Query: 1   MQRLLGARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQ 60
           MQR   ARS+   +  K ++ S +  S+SLLFDDTQLQFKESV +FA++NIAP A  ID+
Sbjct: 1   MQRFFSARSILG-YAVKTRRRSFSSRSSSLLFDDTQLQFKESVSKFAQDNIAPHAERIDK 59

Query: 61  SNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHS 120
           +NSFP+DVNLWKLMG FNLHGITAP+EYGGLGLGYLYHCIAMEEISRASGSV LSYGAHS
Sbjct: 60  TNSFPKDVNLWKLMGEFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVALSYGAHS 119

Query: 121 NLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIIN 180
           NLCINQLVR+G+ AQK+KYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA++VDGGYI+N
Sbjct: 120 NLCINQLVRNGTAAQKEKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKAEKVDGGYILN 179

Query: 181 GNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCE 240
           GNKMWCTNGP A+TLVVYAKTD KAGSKGITAFIIEKGM GFSTAQKLDKLGMRGSDTCE
Sbjct: 180 GNKMWCTNGPSAETLVVYAKTDTKAGSKGITAFIIEKGMTGFSTAQKLDKLGMRGSDTCE 239

Query: 241 LVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQA 285
           LVFENCFVP EN+L +EGKGVYV+MSGLDLERLVLAAGPLGIMQA
Sbjct: 240 LVFENCFVPEENILDKEGKGVYVLMSGLDLERLVLAAGPLGIMQA 284

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 3

EC: .

EC: 8

EC: .

EC: 4

>sp|Q9FS87|IVD2_SOLTU Isovaleryl-CoA dehydrogenase 2, mitochondrial (Fragment) OS=Solanum tuberosum GN=IVD2 PE=1 SV=1

 Score =  452 bits (1164), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 228/267 (85%), Positives = 244/267 (91%)

Query: 19  QKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFN 78
           QK   A  STSLLFDDTQ QFKESV QFA+ENIAP A  ID++N FPQDVNLWKLMG+FN
Sbjct: 10  QKPQFAAFSTSLLFDDTQKQFKESVAQFAQENIAPHAEKIDRTNYFPQDVNLWKLMGDFN 69

Query: 79  LHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDK 138
           L GIT P+EYGGLGLGYLYHCIAMEEISRASGSVGLSYGAH+NLCINQLVR+G+  QK K
Sbjct: 70  LLGITVPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHTNLCINQLVRNGTHEQKQK 129

Query: 139 YLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVY 198
           YLPKLISGEHVGALAMSEP+AGSDVV MKCKADRV+GGY++NGNKMWCTNGP AQTLVVY
Sbjct: 130 YLPKLISGEHVGALAMSEPDAGSDVVSMKCKADRVEGGYVLNGNKMWCTNGPTAQTLVVY 189

Query: 199 AKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEG 258
           AKTD+ A SKGITAFIIEKGM GFSTAQKLDKLGMRGSDTCELVFENCFVP ENVLGQ G
Sbjct: 190 AKTDVTASSKGITAFIIEKGMTGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGQVG 249

Query: 259 KGVYVMMSGLDLERLVLAAGPLGIMQA 285
           KGVYV+MSGLDLERLVLA+GP+GIMQA
Sbjct: 250 KGVYVLMSGLDLERLVLASGPVGIMQA 276

Solanum tuberosum (taxid: 4113)

EC: 1

EC: .

EC: 3

EC: .

EC: 8

EC: .

EC: 4

>sp|Q5RBD5|IVD_PONAB Isovaleryl-CoA dehydrogenase, mitochondrial OS=Pongo abelii GN=IVD PE=2 SV=1

 Score =  363 bits (933), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 174/256 (67%), Positives = 209/256 (81%), Gaps = 2/256 (0%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGL 91
             + Q Q +++V +F +E++AP+A  ID+SN F      WK +GN  + GITAP +YGG 
Sbjct: 42  LSEEQRQLRQTVAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGS 101

Query: 92  GLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
           GLGYL H + MEEISRASG+VGLSYGAHSNLCINQLVR+G+ AQK+KYLPKLISGE++GA
Sbjct: 102 GLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGA 161

Query: 152 LAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA--GSKG 209
           LAMSEPNAGSDVV MK KA++    YI+NGNK W TNGP A  L+VYAKTD+ A   S+G
Sbjct: 162 LAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAAVPASRG 221

Query: 210 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLD 269
           ITAFI+EKGMPGFST++KLDKLGMRGS+TCEL+FE+C VP  N+LG E KGVYV+MSGLD
Sbjct: 222 ITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKVPAANILGHENKGVYVLMSGLD 281

Query: 270 LERLVLAAGPLGIMQA 285
           LERLVLA GPLG+MQA
Sbjct: 282 LERLVLAGGPLGLMQA 297

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 3

EC: .

EC: 8

EC: .

EC: 4

>sp|Q9JHI5|IVD_MOUSE Isovaleryl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Ivd PE=1 SV=1

 Score =  363 bits (931), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 174/256 (67%), Positives = 208/256 (81%), Gaps = 2/256 (0%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGL 91
            ++ Q Q + ++ +F +EN+AP+A  IDQ+N F      WK +G+  + GITAP +YGG 
Sbjct: 43  LNEEQKQLRHTISKFLQENLAPKAQEIDQTNDFKNLREFWKQLGSLGVLGITAPVQYGGS 102

Query: 92  GLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
           GLGYL H + MEEISRASG+VGLSYGAHSNLC+NQ+VR+G+ AQK+KYLPKLISGE +GA
Sbjct: 103 GLGYLEHVLVMEEISRASGAVGLSYGAHSNLCVNQIVRNGNEAQKEKYLPKLISGEFIGA 162

Query: 152 LAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA--GSKG 209
           LAMSEPNAGSDVV MK KA++    Y++NGNK W TNGP A  LVVYAKTD+ A   S+G
Sbjct: 163 LAMSEPNAGSDVVSMKLKAEKKGDHYVLNGNKFWITNGPDADILVVYAKTDLTAVPASRG 222

Query: 210 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLD 269
           ITAFI+EKGMPGFST++KLDKLGMRGS+TCELVFE+C VP  NVL QE KGVYV+MSGLD
Sbjct: 223 ITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELVFEDCKVPAANVLSQESKGVYVLMSGLD 282

Query: 270 LERLVLAAGPLGIMQA 285
           LERLVLA GPLGIMQA
Sbjct: 283 LERLVLAGGPLGIMQA 298

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 3

EC: .

EC: 8

EC: .

EC: 4

>sp|P26440|IVD_HUMAN Isovaleryl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=IVD PE=1 SV=1

 Score =  362 bits (929), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 172/256 (67%), Positives = 209/256 (81%), Gaps = 2/256 (0%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGL 91
             + Q Q ++++ +F +E++AP+A  ID+SN F      WK +GN  + GITAP +YGG 
Sbjct: 42  LSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGS 101

Query: 92  GLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
           GLGYL H + MEEISRASG+VGLSYGAHSNLCINQLVR+G+ AQK+KYLPKLISGE++GA
Sbjct: 102 GLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGA 161

Query: 152 LAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA--GSKG 209
           LAMSEPNAGSDVV MK KA++    YI+NGNK W TNGP A  L+VYAKTD+ A   S+G
Sbjct: 162 LAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAAVPASRG 221

Query: 210 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLD 269
           ITAFI+EKGMPGFST++KLDKLGMRGS+TCEL+FE+C +P  N+LG E KGVYV+MSGLD
Sbjct: 222 ITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHENKGVYVLMSGLD 281

Query: 270 LERLVLAAGPLGIMQA 285
           LERLVLA GPLG+MQA
Sbjct: 282 LERLVLAGGPLGLMQA 297

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 3

EC: .

EC: 8

EC: .

EC: 4

>sp|P12007|IVD_RAT Isovaleryl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Ivd PE=1 SV=2

 Score =  359 bits (922), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 172/256 (67%), Positives = 206/256 (80%), Gaps = 2/256 (0%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGL 91
            ++ Q Q + ++ +F +EN+AP+A  IDQSN F      WK +G+  + GITAP +YGG 
Sbjct: 43  LNEEQKQLRHTISKFVQENLAPKAQEIDQSNDFKNLREFWKQLGSLGVLGITAPVQYGGS 102

Query: 92  GLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
           GLGYL H + MEEISRAS +VGLSYGAHSNLCINQ+VR+G+ AQK+KYLPKLISGE +GA
Sbjct: 103 GLGYLEHVLVMEEISRASAAVGLSYGAHSNLCINQIVRNGNEAQKEKYLPKLISGEFIGA 162

Query: 152 LAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA--GSKG 209
           LAMSEPNAGSDVV M+ KA++    Y++NGNK W TNGP A  LVVYAKTD+ A   S+G
Sbjct: 163 LAMSEPNAGSDVVSMRLKAEKKGDHYVLNGNKFWITNGPDADVLVVYAKTDLTAVPASRG 222

Query: 210 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLD 269
           ITAFI+EK MPGFST++KLDKLGMRGS+TCELVFE+C VP  N+L QE KGVYV+MSGLD
Sbjct: 223 ITAFIVEKDMPGFSTSKKLDKLGMRGSNTCELVFEDCKVPAANILSQESKGVYVLMSGLD 282

Query: 270 LERLVLAAGPLGIMQA 285
           LERLVLA GPLGIMQA
Sbjct: 283 LERLVLAGGPLGIMQA 298

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 3

EC: .

EC: 8

EC: .

EC: 4

>sp|Q3SZI8|IVD_BOVIN Isovaleryl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=IVD PE=2 SV=1

 Score =  358 bits (919), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 172/256 (67%), Positives = 208/256 (81%), Gaps = 2/256 (0%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGL 91
            ++ Q Q +++V +F +E++AP+A  IDQSN F      WK +GN  + GITAP +YGG 
Sbjct: 45  LNEEQKQLRQTVAKFLQEHLAPQAQEIDQSNEFKNLREFWKQLGNLGVLGITAPVQYGGS 104

Query: 92  GLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
           GLG+L + + MEEISR SG+VGLSYGAHSNLCINQ+VR+G+  QK+KYLPKLISGE++GA
Sbjct: 105 GLGFLENVLVMEEISRVSGAVGLSYGAHSNLCINQIVRNGNETQKEKYLPKLISGEYIGA 164

Query: 152 LAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA--GSKG 209
           LAMSEPNAGSDVV MK KA++    Y++NGNK W TNGP A  LVVYAKTD+ A   S+G
Sbjct: 165 LAMSEPNAGSDVVSMKLKAEKKGDHYVLNGNKFWITNGPDADVLVVYAKTDVTAVPASRG 224

Query: 210 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLD 269
           ITAFI+EKGMPGFST++KLDKLGMRGS+TCELVFE+C VP  N+LG  GKGVYV+MSGLD
Sbjct: 225 ITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELVFEDCEVPAANILGHLGKGVYVLMSGLD 284

Query: 270 LERLVLAAGPLGIMQA 285
           LERLVLA GPLGIMQA
Sbjct: 285 LERLVLAGGPLGIMQA 300

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 3

EC: .

EC: 8

EC: .

EC: 4

>sp|P52042|ACDS_CLOAB Acyl-CoA dehydrogenase, short-chain specific OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=bcd PE=3 SV=1

 Score =  207 bits (528), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 110/245 (44%), Positives = 155/245 (63%), Gaps = 2/245 (0%)

Query: 40  KESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHC 99
           ++ V +FA   + P AA ID++  FP + N+ K MG + + GI   +EYGG G   L + 
Sbjct: 13  RQMVREFAENEVKPIAAEIDETERFPME-NVKK-MGQYGMMGIPFSKEYGGAGGDVLSYI 70

Query: 100 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNA 159
           IA+EE+S+  G+ G+   AH++LC + +  HG+  QK KYL  L  GE +GA  ++EPNA
Sbjct: 71  IAVEELSKVCGTTGVILSAHTSLCASLINEHGTEEQKQKYLVPLAKGEKIGAYGLTEPNA 130

Query: 160 GSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGM 219
           G+D    +  A      Y+ING+K++ TNG VA T V++A TD   G+KGI+AFIIEKG 
Sbjct: 131 GTDSGAQQTVAVLEGDHYVINGSKIFITNGGVADTFVIFAMTDRTKGTKGISAFIIEKGF 190

Query: 220 PGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGP 279
            GFS  +   KLG+R S T ELVFE+  VP EN++G+EGKG  + M  LD  R+ +AA  
Sbjct: 191 KGFSIGKVEQKLGIRASSTTELVFEDMIVPVENMIGKEGKGFPIAMKTLDGGRIGIAAQA 250

Query: 280 LGIMQ 284
           LGI +
Sbjct: 251 LGIAE 255

Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) (taxid: 272562)

EC: 1

EC: .

EC: 3

EC: .

EC: 8

EC: .

EC: 1

>sp|P45857|ACDB_BACSU Acyl-CoA dehydrogenase OS=Bacillus subtilis (strain 168) GN=mmgC PE=2 SV=3

 Score =  207 bits (527), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 102/253 (40%), Positives = 162/253 (64%), Gaps = 2/253 (0%)

Query: 36  QLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGY 95
           Q+  ++ V  FAR+ IAP A  +++++ FP    L K MG   L GI  P++YGG G   
Sbjct: 7   QVMMRKMVRDFARKEIAPAAEIMEKTDEFP--FQLIKKMGKHGLMGIPVPEQYGGAGADV 64

Query: 96  LYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMS 155
           + + +A+ EISR S +VG+    H+++  N ++  G+  QK KY+P L SG+H+GA A++
Sbjct: 65  VSYILAIHEISRISAAVGVILSVHTSVGTNPILYFGNEEQKMKYIPNLASGDHLGAFALT 124

Query: 156 EPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFII 215
           EP++GSD   ++  A + +G Y++NG+K++ TNG  A   + +A T    G  GI+AFI+
Sbjct: 125 EPHSGSDAGSLRTTAIKKNGKYLLNGSKIFITNGGAADIYITFALTAPDQGRHGISAFIV 184

Query: 216 EKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVL 275
           EK  PGF+  +K  KLG+ GS+T EL+F+N  VP  N+LG+EG G ++ M+ L++ R+ +
Sbjct: 185 EKNTPGFTVGKKERKLGLYGSNTTELIFDNAEVPEANLLGKEGDGFHIAMANLNVGRIGI 244

Query: 276 AAGPLGIMQAPVR 288
           AA  LGI +A + 
Sbjct: 245 AAQALGIAEAALE 257

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
255570831	406	acyl-CoA dehydrogenase, putative [Ricinu	0.982	0.697	0.877	1e-137
115461843	409	Os05g0125500 [Oryza sativa Japonica Grou	0.902	0.635	0.888	1e-136
413950112	477	hypothetical protein ZEAMMB73_407983 [Ze	0.906	0.547	0.858	1e-135
357134886	411	PREDICTED: isovaleryl-CoA dehydrogenase	0.902	0.632	0.880	1e-135
293332891	407	uncharacterized protein LOC100382372 [Ze	0.906	0.641	0.858	1e-135
25453062	412	RecName: Full=Isovaleryl-CoA dehydrogena	0.986	0.689	0.791	1e-134
356539122	410	PREDICTED: isovaleryl-CoA dehydrogenase	0.986	0.692	0.853	1e-133
225435261	405	PREDICTED: isovaleryl-CoA dehydrogenase	0.975	0.693	0.846	1e-133
242089359	410	hypothetical protein SORBIDRAFT_09g00226	0.906	0.636	0.846	1e-133
297746230	404	unnamed protein product [Vitis vinifera]	0.975	0.695	0.846	1e-133

>gi|255570831|ref|XP_002526368.1| acyl-CoA dehydrogenase, putative [Ricinus communis] gi|223534327|gb|EEF36039.1| acyl-CoA dehydrogenase, putative [Ricinus communis]

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 250/285 (87%), Positives = 269/285 (94%), Gaps = 2/285 (0%)

Query: 1   MQRLLGARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQ 60
           MQ++ G RSLC+S   K+Q   A+FS TSLLFDDTQLQFKESV QFA+ENIAP A+ IDQ
Sbjct: 1   MQKVFGLRSLCSSTL-KQQTRRASFS-TSLLFDDTQLQFKESVSQFAQENIAPHASKIDQ 58

Query: 61  SNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHS 120
           +N+FP++VNLWKLMG+FNLHGITAP+EYGGLGLGYLYHCIAMEEISRASGSV LSYGAHS
Sbjct: 59  TNNFPKEVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVALSYGAHS 118

Query: 121 NLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIIN 180
           NLCINQLVR+GSPAQK KYLPKLISGEHVGALAMSEPNAGSDVV MKCKAD VDGGYI+N
Sbjct: 119 NLCINQLVRNGSPAQKQKYLPKLISGEHVGALAMSEPNAGSDVVSMKCKADCVDGGYILN 178

Query: 181 GNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCE 240
           GNKMWCTNGPVAQTLV+YAKTD+KAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCE
Sbjct: 179 GNKMWCTNGPVAQTLVIYAKTDVKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCE 238

Query: 241 LVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQA 285
           LVFENCFVP+ENVLGQEGKGVYVMMSGLDLERLVL+AGPLGIMQA
Sbjct: 239 LVFENCFVPDENVLGQEGKGVYVMMSGLDLERLVLSAGPLGIMQA 283

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115461843|ref|NP_001054521.1| Os05g0125500 [Oryza sativa Japonica Group] gi|47900455|gb|AAT39231.1| putative isovaleryl-CoA dehydrogenase [Oryza sativa Japonica Group] gi|57863927|gb|AAS90672.2| putative isovaleryl-CoA dehydrogenase [Oryza sativa Japonica Group] gi|113578072|dbj|BAF16435.1| Os05g0125500 [Oryza sativa Japonica Group] gi|215694715|dbj|BAG89906.1| unnamed protein product [Oryza sativa Japonica Group] gi|222630047|gb|EEE62179.1| hypothetical protein OsJ_16966 [Oryza sativa Japonica Group]

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 231/260 (88%), Positives = 249/260 (95%)

Query: 26  SSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAP 85
           S++SLLFDDTQ QFKESV +FA+E IAP AA ID SN FP+DVNLWKLMG+FNLHG+TAP
Sbjct: 25  SASSLLFDDTQEQFKESVHKFAQETIAPHAAAIDASNHFPKDVNLWKLMGDFNLHGLTAP 84

Query: 86  QEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLIS 145
           +EYGG+GLGY+YHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQK KYLPKLIS
Sbjct: 85  EEYGGMGLGYMYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKLKYLPKLIS 144

Query: 146 GEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA 205
           GEHVGALAMSEPN+GSDVV MKCKA++VDGGY+INGNKMWCTNGP AQTLVVYAKTDI A
Sbjct: 145 GEHVGALAMSEPNSGSDVVSMKCKAEKVDGGYVINGNKMWCTNGPSAQTLVVYAKTDIAA 204

Query: 206 GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMM 265
           GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVP+ENVLG+EGKGVYVMM
Sbjct: 205 GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPHENVLGEEGKGVYVMM 264

Query: 266 SGLDLERLVLAAGPLGIMQA 285
           SGLDLERLVLAAGP+G+MQA
Sbjct: 265 SGLDLERLVLAAGPIGLMQA 284

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413950112|gb|AFW82761.1| hypothetical protein ZEAMMB73_407983 [Zea mays]

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 224/261 (85%), Positives = 250/261 (95%)

Query: 25  FSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITA 84
           F+S+SLLFDDTQ QFKESV +FA+ENIAPRAA ID SN FP+DV+LW+LMG+FNLHG+TA
Sbjct: 92  FASSSLLFDDTQEQFKESVRKFAQENIAPRAAAIDASNHFPRDVDLWRLMGDFNLHGLTA 151

Query: 85  PQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLI 144
           P+EYGG+GLGY+YHCI+MEEI+RASG+VGLSYGAHSNLCINQLVRHGSP Q+ KYLPKLI
Sbjct: 152 PEEYGGMGLGYMYHCISMEEITRASGAVGLSYGAHSNLCINQLVRHGSPEQRLKYLPKLI 211

Query: 145 SGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK 204
           SGEH+GALAMSEPN+GSDVV MKCKA++VDGGY++NGNKMWCTNGP AQTLVVYAKTD+ 
Sbjct: 212 SGEHIGALAMSEPNSGSDVVSMKCKAEKVDGGYVLNGNKMWCTNGPSAQTLVVYAKTDLA 271

Query: 205 AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVM 264
           AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVP ENVLG+EGKGVYVM
Sbjct: 272 AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPRENVLGEEGKGVYVM 331

Query: 265 MSGLDLERLVLAAGPLGIMQA 285
           MSGLDLERLVLAAGP+G+MQA
Sbjct: 332 MSGLDLERLVLAAGPIGLMQA 352

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357134886|ref|XP_003569046.1| PREDICTED: isovaleryl-CoA dehydrogenase 1, mitochondrial-like [Brachypodium distachyon]

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 229/260 (88%), Positives = 250/260 (96%)

Query: 26  SSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAP 85
           S +SLLFDDTQ QFKESV +FA+E+IAP AA ID SN FP++VNLWKLMG+FNLHG+T+P
Sbjct: 27  SCSSLLFDDTQEQFKESVHRFAQEHIAPHAAAIDASNYFPKEVNLWKLMGDFNLHGLTSP 86

Query: 86  QEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLIS 145
           +EYGGLGLGY+YHCIAMEEISRASGSVGLSYGAHSNLCINQLVR+GSPAQK+KYLPKLIS
Sbjct: 87  EEYGGLGLGYMYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRNGSPAQKEKYLPKLIS 146

Query: 146 GEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA 205
           GEHVGALAMSEPN+GSDVV MKCKA++VDGGY+INGNKMWCTNGP AQTLVVYAKTDI A
Sbjct: 147 GEHVGALAMSEPNSGSDVVSMKCKAEKVDGGYVINGNKMWCTNGPSAQTLVVYAKTDITA 206

Query: 206 GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMM 265
           GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVP+ENVLG+EGKGVYVMM
Sbjct: 207 GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPHENVLGEEGKGVYVMM 266

Query: 266 SGLDLERLVLAAGPLGIMQA 285
           SGLDLERLVLAAGP+G+MQA
Sbjct: 267 SGLDLERLVLAAGPIGLMQA 286

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|293332891|ref|NP_001168588.1| uncharacterized protein LOC100382372 [Zea mays] gi|223949393|gb|ACN28780.1| unknown [Zea mays]

 Score =  485 bits (1249), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 224/261 (85%), Positives = 250/261 (95%)

Query: 25  FSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITA 84
           F+S+SLLFDDTQ QFKESV +FA+ENIAPRAA ID SN FP+DV+LW+LMG+FNLHG+TA
Sbjct: 22  FASSSLLFDDTQEQFKESVRKFAQENIAPRAAAIDASNHFPRDVDLWRLMGDFNLHGLTA 81

Query: 85  PQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLI 144
           P+EYGG+GLGY+YHCI+MEEI+RASG+VGLSYGAHSNLCINQLVRHGSP Q+ KYLPKLI
Sbjct: 82  PEEYGGMGLGYMYHCISMEEITRASGAVGLSYGAHSNLCINQLVRHGSPEQRLKYLPKLI 141

Query: 145 SGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK 204
           SGEH+GALAMSEPN+GSDVV MKCKA++VDGGY++NGNKMWCTNGP AQTLVVYAKTD+ 
Sbjct: 142 SGEHIGALAMSEPNSGSDVVSMKCKAEKVDGGYVLNGNKMWCTNGPSAQTLVVYAKTDLA 201

Query: 205 AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVM 264
           AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVP ENVLG+EGKGVYVM
Sbjct: 202 AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPRENVLGEEGKGVYVM 261

Query: 265 MSGLDLERLVLAAGPLGIMQA 285
           MSGLDLERLVLAAGP+G+MQA
Sbjct: 262 MSGLDLERLVLAAGPIGLMQA 282

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|25453062|sp|Q9FS88.1|IVD1_SOLTU RecName: Full=Isovaleryl-CoA dehydrogenase 1, mitochondrial; Short=IVD 1; Flags: Precursor gi|10129808|emb|CAC08233.1| isovaleryl-CoA dehydrogenase [Solanum tuberosum]

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 228/288 (79%), Positives = 254/288 (88%), Gaps = 4/288 (1%)

Query: 1   MQRLLGARSLCASF---FTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAAN 57
           M +L   RSL ++    F   Q   AAFS TSLL DDTQ QFKESV +FA+ENIAP A  
Sbjct: 1   MHKLFAVRSLSSAIAKNFKSLQNQQAAFS-TSLLLDDTQKQFKESVAKFAQENIAPYAEK 59

Query: 58  IDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYG 117
           ID++NSFP+++NLWKLMG+FNLHGITAP+EYGGL LGYLYHCIA+EEISRASG+V +SYG
Sbjct: 60  IDRTNSFPKEINLWKLMGDFNLHGITAPEEYGGLNLGYLYHCIALEEISRASGAVAVSYG 119

Query: 118 AHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGY 177
             SN+CINQLVR+G+P QK KYLPKLISG+H+GALAMSEPNAGSDVV MKC+ADRVDGGY
Sbjct: 120 VQSNVCINQLVRNGTPDQKQKYLPKLISGDHIGALAMSEPNAGSDVVSMKCRADRVDGGY 179

Query: 178 IINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSD 237
           ++NGNKMWCTNGPVA TL+VYAKTD  AGSKGITAFIIEK MPGFSTAQKLDKLGMRGSD
Sbjct: 180 VLNGNKMWCTNGPVANTLIVYAKTDTTAGSKGITAFIIEKEMPGFSTAQKLDKLGMRGSD 239

Query: 238 TCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQA 285
           TCELVFENCFVP ENVLGQEGKGVYV+MSGLDLERLVLAAGP+GIMQA
Sbjct: 240 TCELVFENCFVPKENVLGQEGKGVYVLMSGLDLERLVLAAGPVGIMQA 287

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539122|ref|XP_003538049.1| PREDICTED: isovaleryl-CoA dehydrogenase 1, mitochondrial-like [Glycine max]

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 244/286 (85%), Positives = 266/286 (93%), Gaps = 2/286 (0%)

Query: 1   MQRLLGARSLCASFF-TKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANID 59
           M R+  ARS+ ++ F +K + HSAAFS TSLLFD+TQ QFKESV QFA ENIAP A+ ID
Sbjct: 1   MHRINTARSIFSAVFRSKSRPHSAAFS-TSLLFDETQTQFKESVAQFATENIAPHASKID 59

Query: 60  QSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAH 119
           Q+N FP++VNLWK MG FNL GITAP+EYGGLGLGYLYHCIAMEEISRASGSVGLSYGAH
Sbjct: 60  QTNYFPKEVNLWKSMGEFNLLGITAPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAH 119

Query: 120 SNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYII 179
           SNLCINQLVR+GSPAQK+KYLPKLISG+HVGALAMSEPN+GSDVV MKCKADRVDGGY++
Sbjct: 120 SNLCINQLVRNGSPAQKEKYLPKLISGDHVGALAMSEPNSGSDVVSMKCKADRVDGGYVL 179

Query: 180 NGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTC 239
           NGNKMWCTNGPVAQTLVVYAKTDI AGSKGITAFIIEKGMPGF+TAQKLDKLGMRGSDTC
Sbjct: 180 NGNKMWCTNGPVAQTLVVYAKTDITAGSKGITAFIIEKGMPGFNTAQKLDKLGMRGSDTC 239

Query: 240 ELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQA 285
           ELVFENCFVP+EN+LG+EGKGVYVMMSGLDLERLVLAAGPLGIMQA
Sbjct: 240 ELVFENCFVPDENILGKEGKGVYVMMSGLDLERLVLAAGPLGIMQA 285

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435261|ref|XP_002285017.1| PREDICTED: isovaleryl-CoA dehydrogenase 1, mitochondrial-like [Vitis vinifera]

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 243/287 (84%), Positives = 263/287 (91%), Gaps = 6/287 (2%)

Query: 1   MQRLLGARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQ 60
           M R+  ARSL      +K +  AAFS T+LLFDDTQ+QFKES+ QFA+ENIAP A+ ID+
Sbjct: 2   MLRVFSARSL-----FRKDRLRAAFS-TALLFDDTQIQFKESIAQFAQENIAPHASRIDR 55

Query: 61  SNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHS 120
           +N FP++VNLWKLMG+FNLHGITAP+EYGGLGLGYLYHCIAMEEISRASGSV LSYGAHS
Sbjct: 56  TNYFPEEVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVALSYGAHS 115

Query: 121 NLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIIN 180
           NLCINQLVR+G+PAQK KYLPKLISGEHVGALAMSEPNAGSDVV MKCKADRVDGGYI+N
Sbjct: 116 NLCINQLVRNGNPAQKQKYLPKLISGEHVGALAMSEPNAGSDVVSMKCKADRVDGGYILN 175

Query: 181 GNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCE 240
           GNKMWCTNGP+AQTLVVYAKTDI A SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCE
Sbjct: 176 GNKMWCTNGPIAQTLVVYAKTDITAHSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCE 235

Query: 241 LVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQAPV 287
           LVFENCFVP ENVLGQEGKGVYVMMSGLDLERLVLAAGPLG+MQA +
Sbjct: 236 LVFENCFVPEENVLGQEGKGVYVMMSGLDLERLVLAAGPLGLMQACI 282

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242089359|ref|XP_002440512.1| hypothetical protein SORBIDRAFT_09g002260 [Sorghum bicolor] gi|241945797|gb|EES18942.1| hypothetical protein SORBIDRAFT_09g002260 [Sorghum bicolor]

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 221/261 (84%), Positives = 248/261 (95%)

Query: 25  FSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITA 84
           F+S+SLLFDDTQ+QFKESV +FA+E IAP AA ID SN FP++V+LW+LMG+FNLHG+TA
Sbjct: 25  FASSSLLFDDTQVQFKESVRKFAQEAIAPHAAAIDASNHFPREVDLWRLMGDFNLHGLTA 84

Query: 85  PQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLI 144
           P+EYGG+GLGY+YHCIAMEEI+RASG+VGLSYGAHSNLCINQLVRHG+P QK KYLPKLI
Sbjct: 85  PEEYGGMGLGYMYHCIAMEEITRASGAVGLSYGAHSNLCINQLVRHGNPEQKLKYLPKLI 144

Query: 145 SGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK 204
           SGEH+GALAMSEPN+GSDVV MKCKA++VDGGY++NGNKMWCTNGP AQTLVVYAKTD+ 
Sbjct: 145 SGEHIGALAMSEPNSGSDVVSMKCKAEKVDGGYVLNGNKMWCTNGPSAQTLVVYAKTDLA 204

Query: 205 AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVM 264
           AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVP ENVLG+EGKGVYVM
Sbjct: 205 AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPRENVLGEEGKGVYVM 264

Query: 265 MSGLDLERLVLAAGPLGIMQA 285
           MSGLDLERLVLA GP+G+MQA
Sbjct: 265 MSGLDLERLVLAGGPIGLMQA 285

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746230|emb|CBI16286.3| unnamed protein product [Vitis vinifera]

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 243/287 (84%), Positives = 263/287 (91%), Gaps = 6/287 (2%)

Query: 1   MQRLLGARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQ 60
           M R+  ARSL      +K +  AAFS T+LLFDDTQ+QFKES+ QFA+ENIAP A+ ID+
Sbjct: 1   MLRVFSARSL-----FRKDRLRAAFS-TALLFDDTQIQFKESIAQFAQENIAPHASRIDR 54

Query: 61  SNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHS 120
           +N FP++VNLWKLMG+FNLHGITAP+EYGGLGLGYLYHCIAMEEISRASGSV LSYGAHS
Sbjct: 55  TNYFPEEVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVALSYGAHS 114

Query: 121 NLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIIN 180
           NLCINQLVR+G+PAQK KYLPKLISGEHVGALAMSEPNAGSDVV MKCKADRVDGGYI+N
Sbjct: 115 NLCINQLVRNGNPAQKQKYLPKLISGEHVGALAMSEPNAGSDVVSMKCKADRVDGGYILN 174

Query: 181 GNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCE 240
           GNKMWCTNGP+AQTLVVYAKTDI A SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCE
Sbjct: 175 GNKMWCTNGPIAQTLVVYAKTDITAHSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCE 234

Query: 241 LVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQAPV 287
           LVFENCFVP ENVLGQEGKGVYVMMSGLDLERLVLAAGPLG+MQA +
Sbjct: 235 LVFENCFVPEENVLGQEGKGVYVMMSGLDLERLVLAAGPLGLMQACI 281

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
TAIR|locus:2078302	409	IVD "isovaleryl-CoA-dehydrogen	0.986	0.694	0.796	1.1e-119
DICTYBASE|DDB_G0279827	415	ivdA "isovaleryl-CoA dehydroge	0.875	0.607	0.692	1.2e-90
UNIPROTKB|F1NF35	424	IVD "Uncharacterized protein"	0.979	0.665	0.595	1.1e-87
UNIPROTKB|J3KR54	426	IVD "Isovaleryl-CoA dehydrogen	0.940	0.636	0.609	2e-86
UNIPROTKB|P26440	423	IVD "Isovaleryl-CoA dehydrogen	0.940	0.640	0.609	2e-86
MGI|MGI:1929242	424	Ivd "isovaleryl coenzyme A deh	0.878	0.596	0.650	4.3e-86
UNIPROTKB|Q3SZI8	426	IVD "Isovaleryl-CoA dehydrogen	0.878	0.593	0.647	1.8e-85
UNIPROTKB|F1SSR4	426	IVD "Uncharacterized protein"	0.875	0.591	0.645	6.2e-85
RGD|2936	424	Ivd "isovaleryl-CoA dehydrogen	0.878	0.596	0.643	6.2e-85
ZFIN|ZDB-GENE-030616-262	425	ivd "isovaleryl Coenzyme A deh	0.875	0.592	0.630	1.5e-83

TAIR|locus:2078302 IVD "isovaleryl-CoA-dehydrogenase" [Arabidopsis thaliana (taxid:3702)]

 Score = 1178 (419.7 bits), Expect = 1.1e-119, P = 1.1e-119
 Identities = 227/285 (79%), Positives = 250/285 (87%)

Query:     1 MQRLLGARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQ 60
             MQR   ARS+   +  K ++ S +  S+SLLFDDTQLQFKESV +FA++NIAP A  ID+
Sbjct:     1 MQRFFSARSILG-YAVKTRRRSFSSRSSSLLFDDTQLQFKESVSKFAQDNIAPHAERIDK 59

Query:    61 SNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHS 120
             +NSFP+DVNLWKLMG FNLHGITAP+E          HCIAMEEISRASGSV LSYGAHS
Sbjct:    60 TNSFPKDVNLWKLMGEFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVALSYGAHS 119

Query:   121 NLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIIN 180
             NLCINQLVR+G+ AQK+KYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA++VDGGYI+N
Sbjct:   120 NLCINQLVRNGTAAQKEKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKAEKVDGGYILN 179

Query:   181 GNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCE 240
             GNKMWCTNGP A+TLVVYAKTD KAGSKGITAFIIEKGM GFSTAQKLDKLGMRGSDTCE
Sbjct:   180 GNKMWCTNGPSAETLVVYAKTDTKAGSKGITAFIIEKGMTGFSTAQKLDKLGMRGSDTCE 239

Query:   241 LVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQA 285
             LVFENCFVP EN+L +EGKGVYV+MSGLDLERLVLAAGPLGIMQA
Sbjct:   240 LVFENCFVPEENILDKEGKGVYVLMSGLDLERLVLAAGPLGIMQA 284

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008152 "metabolic process" evidence=IEA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008470 "isovaleryl-CoA dehydrogenase activity" evidence=ISS;IDA

GO:0005759 "mitochondrial matrix" evidence=IDA

GO:0006552 "leucine catabolic process" evidence=IMP;IDA

GO:0005524 "ATP binding" evidence=IDA

GO:0009083 "branched-chain amino acid catabolic process" evidence=IMP

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

DICTYBASE|DDB_G0279827 ivdA "isovaleryl-CoA dehydrogenase, mitochondrial" [Dictyostelium discoideum (taxid:44689)]

 Score = 904 (323.3 bits), Expect = 1.2e-90, P = 1.2e-90
 Identities = 176/254 (69%), Positives = 205/254 (80%)

Query:    32 FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXX 91
             FD+T LQ +ESV +FA+  +AP AA++D++N FP +  +WK MG+  L GITAP +    
Sbjct:    38 FDETLLQLQESVREFAQNELAPIAADVDKNNLFPNE--MWKKMGDLGLLGITAPSKYGGL 95

Query:    92 XXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
                   HCIAMEE+SRAS SV LSYGAHSNLCINQ+ R+ + AQKDKYLPKLISG+ VGA
Sbjct:    96 DLGYTAHCIAMEELSRASASVALSYGAHSNLCINQITRNANEAQKDKYLPKLISGDFVGA 155

Query:   152 LAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGIT 211
             LAMSEPNAGSDVV MK  A + +GG+++NGNKMW TNGP A  LVVYAKTDI AGSKGIT
Sbjct:   156 LAMSEPNAGSDVVSMKTNAKKTEGGWLLNGNKMWITNGPDANVLVVYAKTDINAGSKGIT 215

Query:   212 AFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLE 271
             AF+IEK M GFST QKLDKLGMRGS+TCELVFE+CFVP+ENVLG  G GV V+MSGLD E
Sbjct:   216 AFLIEKEMKGFSTGQKLDKLGMRGSNTCELVFEDCFVPDENVLGTVGGGVKVLMSGLDYE 275

Query:   272 RLVLAAGPLGIMQA 285
             RLVL+AGPLGIMQA
Sbjct:   276 RLVLSAGPLGIMQA 289

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

GO:0008470 "isovaleryl-CoA dehydrogenase activity" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|F1NF35 IVD "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 876 (313.4 bits), Expect = 1.1e-87, P = 1.1e-87
 Identities = 174/292 (59%), Positives = 214/292 (73%)

Query:     4 LLGARSLCASFFTKKQKHSAAFSS-TSLLFDDT-------QLQFKESVGQFARENIAPRA 55
             +LG  +LC++    +Q+ +        L  DDT       Q Q ++++ +F +E++AP+A
Sbjct:     7 VLGRAALCSALRGARQRQALLRRGFAGLAVDDTVNGLSDEQRQLRQTMTKFCQEHLAPKA 66

Query:    56 ANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLS 115
               IDQ N F      WK +G   + GITAP E          H + MEE+SRAS +VGLS
Sbjct:    67 QQIDQENEFKGMREFWKKLGELGVLGITAPVEYGGSALGYLDHVLVMEEVSRASAAVGLS 126

Query:   116 YGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDG 175
             YGAHSNLCINQLVR+GS AQK+KYLPKLISGEH+GALAMSEPNAGSDVV MK KAD+   
Sbjct:   127 YGAHSNLCINQLVRNGSEAQKEKYLPKLISGEHIGALAMSEPNAGSDVVSMKLKADKKGD 186

Query:   176 GYIINGNKMWCTNGPVAQTLVVYAKTDIKA--GSKGITAFIIEKGMPGFSTAQKLDKLGM 233
              Y++NGNK W TNGP A  L+VYAKTD+ A   S+GITAFI+EKGMPGFSTAQKLDKLGM
Sbjct:   187 YYVLNGNKFWITNGPDADVLIVYAKTDLNAVPASQGITAFIVEKGMPGFSTAQKLDKLGM 246

Query:   234 RGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQA 285
             RGS+TCEL+FE+C +P EN+LG+  KGVYV+MSGLDLERLVL+ GPLG+MQA
Sbjct:   247 RGSNTCELIFEDCKIPAENILGKLSKGVYVLMSGLDLERLVLSGGPLGLMQA 298

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|J3KR54 IVD "Isovaleryl-CoA dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 864 (309.2 bits), Expect = 2.0e-86, P = 2.0e-86
 Identities = 167/274 (60%), Positives = 208/274 (75%)

Query:    15 FTKKQKHSAAFSSTSLL-FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKL 73
             F  ++ HS      ++    + Q Q ++++ +F +E++AP+A  ID+SN F      WK 
Sbjct:    27 FVSQRAHSLLPVDDAINGLSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQ 86

Query:    74 MGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSP 133
             +GN  + GITAP +          H + MEEISRASG+VGLSYGAHSNLCINQLVR+G+ 
Sbjct:    87 LGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNE 146

Query:   134 AQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQ 193
             AQK+KYLPKLISGE++GALAMSEPNAGSDVV MK KA++    YI+NGNK W TNGP A 
Sbjct:   147 AQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDAD 206

Query:   194 TLVVYAKTDIKA--GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNE 251
              L+VYAKTD+ A   S+GITAFI+EKGMPGFST++KLDKLGMRGS+TCEL+FE+C +P  
Sbjct:   207 VLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAA 266

Query:   252 NVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQA 285
             N+LG E KGVYV+MSGLDLERLVLA GPLG+MQA
Sbjct:   267 NILGHENKGVYVLMSGLDLERLVLAGGPLGLMQA 300

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0008470 "isovaleryl-CoA dehydrogenase activity" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=IEA

UNIPROTKB|P26440 IVD "Isovaleryl-CoA dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 864 (309.2 bits), Expect = 2.0e-86, P = 2.0e-86
 Identities = 167/274 (60%), Positives = 208/274 (75%)

Query:    15 FTKKQKHSAAFSSTSLL-FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKL 73
             F  ++ HS      ++    + Q Q ++++ +F +E++AP+A  ID+SN F      WK 
Sbjct:    24 FVSQRAHSLLPVDDAINGLSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQ 83

Query:    74 MGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSP 133
             +GN  + GITAP +          H + MEEISRASG+VGLSYGAHSNLCINQLVR+G+ 
Sbjct:    84 LGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNE 143

Query:   134 AQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQ 193
             AQK+KYLPKLISGE++GALAMSEPNAGSDVV MK KA++    YI+NGNK W TNGP A 
Sbjct:   144 AQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDAD 203

Query:   194 TLVVYAKTDIKA--GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNE 251
              L+VYAKTD+ A   S+GITAFI+EKGMPGFST++KLDKLGMRGS+TCEL+FE+C +P  
Sbjct:   204 VLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAA 263

Query:   252 NVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQA 285
             N+LG E KGVYV+MSGLDLERLVLA GPLG+MQA
Sbjct:   264 NILGHENKGVYVLMSGLDLERLVLAGGPLGLMQA 297

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0006552 "leucine catabolic process" evidence=IEA;ISS

GO:0005759 "mitochondrial matrix" evidence=ISS;TAS

GO:0008470 "isovaleryl-CoA dehydrogenase activity" evidence=EXP;ISS

GO:0009083 "branched-chain amino acid catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

MGI|MGI:1929242 Ivd "isovaleryl coenzyme A dehydrogenase" [Mus musculus (taxid:10090)]

 Score = 861 (308.1 bits), Expect = 4.3e-86, P = 4.3e-86
 Identities = 166/255 (65%), Positives = 200/255 (78%)

Query:    33 DDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXX 92
             ++ Q Q + ++ +F +EN+AP+A  IDQ+N F      WK +G+  + GITAP +     
Sbjct:    44 NEEQKQLRHTISKFLQENLAPKAQEIDQTNDFKNLREFWKQLGSLGVLGITAPVQYGGSG 103

Query:    93 XXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGAL 152
                  H + MEEISRASG+VGLSYGAHSNLC+NQ+VR+G+ AQK+KYLPKLISGE +GAL
Sbjct:   104 LGYLEHVLVMEEISRASGAVGLSYGAHSNLCVNQIVRNGNEAQKEKYLPKLISGEFIGAL 163

Query:   153 AMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA--GSKGI 210
             AMSEPNAGSDVV MK KA++    Y++NGNK W TNGP A  LVVYAKTD+ A   S+GI
Sbjct:   164 AMSEPNAGSDVVSMKLKAEKKGDHYVLNGNKFWITNGPDADILVVYAKTDLTAVPASRGI 223

Query:   211 TAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDL 270
             TAFI+EKGMPGFST++KLDKLGMRGS+TCELVFE+C VP  NVL QE KGVYV+MSGLDL
Sbjct:   224 TAFIVEKGMPGFSTSKKLDKLGMRGSNTCELVFEDCKVPAANVLSQESKGVYVLMSGLDL 283

Query:   271 ERLVLAAGPLGIMQA 285
             ERLVLA GPLGIMQA
Sbjct:   284 ERLVLAGGPLGIMQA 298

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=ISO

GO:0006552 "leucine catabolic process" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0008470 "isovaleryl-CoA dehydrogenase activity" evidence=ISO

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=ISO

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=ISO

UNIPROTKB|Q3SZI8 IVD "Isovaleryl-CoA dehydrogenase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 855 (306.0 bits), Expect = 1.8e-85, P = 1.8e-85
 Identities = 165/255 (64%), Positives = 200/255 (78%)

Query:    33 DDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXX 92
             ++ Q Q +++V +F +E++AP+A  IDQSN F      WK +GN  + GITAP +     
Sbjct:    46 NEEQKQLRQTVAKFLQEHLAPQAQEIDQSNEFKNLREFWKQLGNLGVLGITAPVQYGGSG 105

Query:    93 XXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGAL 152
                  + + MEEISR SG+VGLSYGAHSNLCINQ+VR+G+  QK+KYLPKLISGE++GAL
Sbjct:   106 LGFLENVLVMEEISRVSGAVGLSYGAHSNLCINQIVRNGNETQKEKYLPKLISGEYIGAL 165

Query:   153 AMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA--GSKGI 210
             AMSEPNAGSDVV MK KA++    Y++NGNK W TNGP A  LVVYAKTD+ A   S+GI
Sbjct:   166 AMSEPNAGSDVVSMKLKAEKKGDHYVLNGNKFWITNGPDADVLVVYAKTDVTAVPASRGI 225

Query:   211 TAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDL 270
             TAFI+EKGMPGFST++KLDKLGMRGS+TCELVFE+C VP  N+LG  GKGVYV+MSGLDL
Sbjct:   226 TAFIVEKGMPGFSTSKKLDKLGMRGSNTCELVFEDCEVPAANILGHLGKGVYVLMSGLDL 285

Query:   271 ERLVLAAGPLGIMQA 285
             ERLVLA GPLGIMQA
Sbjct:   286 ERLVLAGGPLGIMQA 300

GO:0006552 "leucine catabolic process" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

UNIPROTKB|F1SSR4 IVD "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 850 (304.3 bits), Expect = 6.2e-85, P = 6.2e-85
 Identities = 164/254 (64%), Positives = 200/254 (78%)

Query:    34 DTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXX 93
             + Q Q ++++ +F +E++AP+A  IDQSN F      WK +GN  + GITAP +      
Sbjct:    47 EEQKQLRQTMTKFLQEHLAPQAQEIDQSNEFKNLREFWKQLGNLGVLGITAPVQYGGTGL 106

Query:    94 XXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALA 153
                 H + MEEISRASG+VGLSYGAHSNLC+NQ+VR+G+ AQK+KYLPKLISGE++GALA
Sbjct:   107 GYLEHVVVMEEISRASGAVGLSYGAHSNLCLNQIVRNGNEAQKEKYLPKLISGEYIGALA 166

Query:   154 MSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA--GSKGIT 211
             MSE NAGSDVV MK KAD+    Y++NGNK W TNGP A  LVVYAKTD+ A   S+GIT
Sbjct:   167 MSETNAGSDVVSMKLKADKKGDYYVLNGNKFWITNGPDADVLVVYAKTDLAAVPPSRGIT 226

Query:   212 AFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLE 271
             AFI+EKGMPGFST++KLDKLGMRGS+TCEL+FE+C VP  N+LGQ  KGVYV+MSGLDLE
Sbjct:   227 AFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKVPAVNILGQLSKGVYVLMSGLDLE 286

Query:   272 RLVLAAGPLGIMQA 285
             RLVLA GPLG+MQA
Sbjct:   287 RLVLAGGPLGLMQA 300

GO:0005739 "mitochondrion" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

RGD|2936 Ivd "isovaleryl-CoA dehydrogenase" [Rattus norvegicus (taxid:10116)]

 Score = 850 (304.3 bits), Expect = 6.2e-85, P = 6.2e-85
 Identities = 164/255 (64%), Positives = 198/255 (77%)

Query:    33 DDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXX 92
             ++ Q Q + ++ +F +EN+AP+A  IDQSN F      WK +G+  + GITAP +     
Sbjct:    44 NEEQKQLRHTISKFVQENLAPKAQEIDQSNDFKNLREFWKQLGSLGVLGITAPVQYGGSG 103

Query:    93 XXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGAL 152
                  H + MEEISRAS +VGLSYGAHSNLCINQ+VR+G+ AQK+KYLPKLISGE +GAL
Sbjct:   104 LGYLEHVLVMEEISRASAAVGLSYGAHSNLCINQIVRNGNEAQKEKYLPKLISGEFIGAL 163

Query:   153 AMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA--GSKGI 210
             AMSEPNAGSDVV M+ KA++    Y++NGNK W TNGP A  LVVYAKTD+ A   S+GI
Sbjct:   164 AMSEPNAGSDVVSMRLKAEKKGDHYVLNGNKFWITNGPDADVLVVYAKTDLTAVPASRGI 223

Query:   211 TAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDL 270
             TAFI+EK MPGFST++KLDKLGMRGS+TCELVFE+C VP  N+L QE KGVYV+MSGLDL
Sbjct:   224 TAFIVEKDMPGFSTSKKLDKLGMRGSNTCELVFEDCKVPAANILSQESKGVYVLMSGLDL 283

Query:   271 ERLVLAAGPLGIMQA 285
             ERLVLA GPLGIMQA
Sbjct:   284 ERLVLAGGPLGIMQA 298

GO:0005739 "mitochondrion" evidence=ISO

GO:0005759 "mitochondrial matrix" evidence=IDA

GO:0006551 "leucine metabolic process" evidence=TAS

GO:0006552 "leucine catabolic process" evidence=IEA;IDA

GO:0008470 "isovaleryl-CoA dehydrogenase activity" evidence=ISO;IDA

GO:0031966 "mitochondrial membrane" evidence=IDA

GO:0033539 "fatty acid beta-oxidation using acyl-CoA dehydrogenase" evidence=IC

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=TAS

ZFIN|ZDB-GENE-030616-262 ivd "isovaleryl Coenzyme A dehydrogenase" [Danio rerio (taxid:7955)]

 Score = 837 (299.7 bits), Expect = 1.5e-83, P = 1.5e-83
 Identities = 159/252 (63%), Positives = 194/252 (76%)

Query:    34 DTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXX 93
             + Q+Q +++V +F +E +AP A  ID+ N FPQ    WK MG+  L G+TAP E      
Sbjct:    48 EEQIQLRQTVQRFFQEKLAPYADEIDKKNEFPQMREFWKEMGDLGLLGVTAPVEFGGTGL 107

Query:    94 XXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALA 153
                 H I MEEISR S ++GLSYGAHSNLC+NQ+VRHG+  QK+KY+PKL++GEHVGALA
Sbjct:   108 GYLDHVIIMEEISRVSAAIGLSYGAHSNLCVNQMVRHGNQKQKEKYMPKLLTGEHVGALA 167

Query:   154 MSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAF 213
             MSE N+GSDVV MK  A +    Y++NGNK W TNG  A  L+VYAKTD +A ++GITAF
Sbjct:   168 MSESNSGSDVVSMKLTAKKQGDHYVLNGNKFWITNGSDADVLIVYAKTDPEAVARGITAF 227

Query:   214 IIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERL 273
             I+EKGMPGFS+AQKLDKLGMRGS TCELVFE+C +P ENVLG   KGVYV+MSGLDLERL
Sbjct:   228 IVEKGMPGFSSAQKLDKLGMRGSSTCELVFEDCKIPEENVLGPLNKGVYVLMSGLDLERL 287

Query:   274 VLAAGPLGIMQA 285
             VLA+GP+GIMQA
Sbjct:   288 VLASGPVGIMQA 299

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SWG0	IVD_ARATH	1, ., 3, ., 8, ., 4	0.8315	0.9861	0.6943	yes	no
Q9FS87	IVD2_SOLTU	1, ., 3, ., 8, ., 4	0.8539	0.9270	0.6658	N/A	no
Q9FS88	IVD1_SOLTU	1, ., 3, ., 8, ., 4	0.7916	0.9861	0.6893	N/A	no
Q5RBD5	IVD_PONAB	1, ., 3, ., 8, ., 4	0.6796	0.8819	0.6004	yes	no
P26440	IVD_HUMAN	1, ., 3, ., 8, ., 4	0.6718	0.8819	0.6004	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.3.99	0.963
3rd Layer	1.3.99.10	0.946

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	4337676	acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed (409 aa)
		(Oryza sativa Japonica)
Predicted Functional Partners:
	4345605	methylcrotonoyl-CoA carboxylase beta chain, mitochondrial precursor, putative, expressed (572 aa)	•		•	•		•	•		0.984
	4325632	3-hydroxybutyryl-CoA dehydrogenase, putative, expressed (302 aa)	•			•		•	•		0.964
	4334698	electron transfer flavoprotein subunit alpha, mitochondrial precursor, putative, expressed; The [...] (358 aa)	•		•	•			•		0.963
	4335102	electron transfer flavoprotein subunit beta, putative, expressed; The electron transfer flavopr [...] (253 aa)	•		•	•			•		0.953
	4352741	methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed (737 aa)	•			•		•	•		0.924
	4346520	acetyl-CoA acetyltransferase, cytosolic, putative, expressed (401 aa)	•					•	•		0.906
	4326136	acetyl-CoA acetyltransferase, cytosolic, putative, expressed (416 aa)	•					•	•		0.901
	4330184	enoyl-CoA hydratase/isomerase family protein, putative, expressed (300 aa)	•					•	•		0.865
	OsI_08314	enoyl-CoA hydratase/isomerase family protein, putative, expressed (294 aa)	•					•	•		0.841
	4331150	3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed (448 aa)	•					•	•		0.820

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	288
PLN02519	404	PLN02519, PLN02519, isovaleryl-CoA dehydrogenase	0.0
cd01156	376	cd01156, IVD, Isovaleryl-CoA dehydrogenase	1e-165
cd01158	373	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrog	7e-96
COG1960	393	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid meta	5e-84
PTZ00461	410	PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase;	1e-73
cd00567	327	cd00567, ACAD, Acyl-CoA dehydrogenase	6e-69
cd01160	372	cd01160, LCAD, Long chain acyl-CoA dehydrogenase	2e-68
cd01161	409	cd01161, VLCAD, Very long chain acyl-CoA dehydroge	6e-61
cd01151	386	cd01151, GCD, Glutaryl-CoA dehydrogenase	6e-58
cd01157	378	cd01157, MCAD, Medium chain acyl-CoA dehydrogenase	8e-52
cd01162	375	cd01162, IBD, Isobutyryl-CoA dehydrogenase	9e-49
pfam02771	113	pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase,	1e-46
cd01152	380	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehyd	1e-38
TIGR03207	372	TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-Co	1e-36
cd01153	407	cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogena	5e-33
PLN02526	412	PLN02526, PLN02526, acyl-coenzyme A oxidase	2e-32
PRK12341	381	PRK12341, PRK12341, putative acyl-CoA dehydrogenas	7e-29
PRK03354	380	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogen	2e-27
TIGR03204	395	TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase,	9e-24
PTZ00456	622	PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provis	2e-22
pfam02770	52	pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase,	1e-18
cd01154	418	cd01154, AidB, Proteins involved in DNA damage res	4e-16
PTZ00457	520	PTZ00457, PTZ00457, acyl-CoA dehydrogenase; Provis	2e-15
cd01163	377	cd01163, DszC, Dibenzothiophene (DBT) desulfurizat	2e-14
cd01155	394	cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases simil	2e-14
PLN02876	822	PLN02876, PLN02876, acyl-CoA dehydrogenase	4e-14
TIGR03203	378	TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase,	3e-13
PRK13026	774	PRK13026, PRK13026, acyl-CoA dehydrogenase; Review	2e-12
PRK09463	777	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	8e-12
TIGR04022	391	TIGR04022, sulfur_SfnB, sulfur acquisition oxidore	2e-10
PLN02636	686	PLN02636, PLN02636, acyl-coenzyme A oxidase	7e-10
cd01159	370	cd01159, NcnH, Naphthocyclinone hydroxylase	1e-09
cd01150	610	cd01150, AXO, Peroxisomal acyl-CoA oxidase	2e-08
PRK11561	538	PRK11561, PRK11561, isovaleryl CoA dehydrogenase;	4e-07
PTZ00460	646	PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provis	2e-05
PLN02312	680	PLN02312, PLN02312, acyl-CoA oxidase	5e-05
pfam00441	150	pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase,	5e-04

>gnl|CDD|215284 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase

 Score =  553 bits (1427), Expect = 0.0
 Identities = 238/270 (88%), Positives = 255/270 (94%)

Query: 16  TKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMG 75
            +      + SS+SLLFDDTQLQFKESV QFA+ENIAP AA ID +NSFP+DVNLWKLMG
Sbjct: 10  RRGLARRFSSSSSSLLFDDTQLQFKESVQQFAQENIAPHAAAIDATNSFPKDVNLWKLMG 69

Query: 76  NFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQ 135
           +FNLHGITAP+EYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVR+G+PAQ
Sbjct: 70  DFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRNGTPAQ 129

Query: 136 KDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTL 195
           K+KYLPKLISGEHVGALAMSEPN+GSDVV MKCKA+RVDGGY++NGNKMWCTNGPVAQTL
Sbjct: 130 KEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERVDGGYVLNGNKMWCTNGPVAQTL 189

Query: 196 VVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLG 255
           VVYAKTD+ AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVP ENVLG
Sbjct: 190 VVYAKTDVAAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLG 249

Query: 256 QEGKGVYVMMSGLDLERLVLAAGPLGIMQA 285
           QEGKGVYVMMSGLDLERLVLAAGPLG+MQA
Sbjct: 250 QEGKGVYVMMSGLDLERLVLAAGPLGLMQA 279

Length = 404

>gnl|CDD|173845 cd01156, IVD, Isovaleryl-CoA dehydrogenase

 Score =  463 bits (1193), Expect = e-165
 Identities = 181/254 (71%), Positives = 208/254 (81%), Gaps = 2/254 (0%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGL 91
            DD     ++SV +FA++ IAP AA ID+ N FP   +LW+ MG   L GITAP+EYGG 
Sbjct: 2   LDDEIEMLRQSVREFAQKEIAPLAAKIDRDNEFP--RDLWRKMGKLGLLGITAPEEYGGS 59

Query: 92  GLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
           G+GYL H I MEEISRASGSV LSYGAHSNLCINQ+ R+GS AQK+KYLPKLISGEH+GA
Sbjct: 60  GMGYLAHVIIMEEISRASGSVALSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGA 119

Query: 152 LAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGIT 211
           LAMSEPNAGSDVV MK +A++    Y++NG+KMW TNGP A TLVVYAKTD  AG+ GIT
Sbjct: 120 LAMSEPNAGSDVVSMKLRAEKKGDRYVLNGSKMWITNGPDADTLVVYAKTDPSAGAHGIT 179

Query: 212 AFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLE 271
           AFI+EKGMPGFS AQKLDKLGMRGS+TCELVFE+C VP EN+LG E KGVYV+MSGLD E
Sbjct: 180 AFIVEKGMPGFSRAQKLDKLGMRGSNTCELVFEDCEVPEENILGGENKGVYVLMSGLDYE 239

Query: 272 RLVLAAGPLGIMQA 285
           RLVLA GP+GIMQA
Sbjct: 240 RLVLAGGPIGIMQA 253

Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates. Length = 376

>gnl|CDD|173847 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases

 Score =  286 bits (735), Expect = 7e-96
 Identities = 114/252 (45%), Positives = 160/252 (63%), Gaps = 2/252 (0%)

Query: 34  DTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGL 93
           +     +++V  FA + IAP AA +D+   FP++V   K M    L GI  P+EYGG GL
Sbjct: 1   EEHQMIRKTVRDFAEKEIAPLAAEMDEKGEFPREV--IKEMAELGLMGIPIPEEYGGAGL 58

Query: 94  GYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALA 153
            +L + IA+EE+++   SV +    H++L  N +++ G+  QK KYLP L +GE +GA A
Sbjct: 59  DFLAYAIAIEELAKVDASVAVIVSVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFA 118

Query: 154 MSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAF 213
           +SEP AGSD   +K  A +    Y++NG+KMW TNG  A   +V+A TD   G +GITAF
Sbjct: 119 LSEPGAGSDAAALKTTAKKDGDDYVLNGSKMWITNGGEADFYIVFAVTDPSKGYRGITAF 178

Query: 214 IIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERL 273
           I+E+  PG S  +K DKLG+RGS T EL+FE+  VP EN+LG+EG+G  + M  LD  R+
Sbjct: 179 IVERDTPGLSVGKKEDKLGIRGSSTTELIFEDVRVPKENILGEEGEGFKIAMQTLDGGRI 238

Query: 274 VLAAGPLGIMQA 285
            +AA  LGI QA
Sbjct: 239 GIAAQALGIAQA 250

Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers. Length = 373

>gnl|CDD|224871 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]

 Score =  257 bits (657), Expect = 5e-84
 Identities = 107/263 (40%), Positives = 154/263 (58%), Gaps = 11/263 (4%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQS---NSFPQDVNLWKLMGNFNLHGITAPQEY 88
             + Q   +  V +FA E +AP AA ID+      FP++  L + +    L G+T P+EY
Sbjct: 5   LSEEQEALRAEVREFAEEELAPEAAEIDRRIEDERFPRE--LLRALAEAGLLGLTIPEEY 62

Query: 89  GGLGLGYLYHCIAMEEISRASGSVGLSYGAHSN---LCINQLVRHGSPAQKDKYLPKLIS 145
           GGLGL  L     +EE++RA     L+ G            ++R G+  QK +YLP+L S
Sbjct: 63  GGLGLSPLEQAAVLEELARADAGGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLAS 122

Query: 146 GEHVGALAMSEPNAGSDVVGMKC-KADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD-I 203
           GE +GA A++EP AGSD+  ++   A R DG Y++NG K+W +N PVA  L+V A+TD  
Sbjct: 123 GELIGAFALTEPGAGSDLASLRTTAAVRDDGDYVLNGQKIWISNAPVADWLLVLARTDPA 182

Query: 204 KAGSKGITAFIIEKG-MPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVY 262
               KGI+ F++ K   PG S    L K+G+RGS T E+ F++  VP EN+LG+EG G  
Sbjct: 183 PGKHKGISLFLVPKDLTPGVSVGPILKKMGLRGSATGEVFFDDVRVPAENLLGEEGDGFK 242

Query: 263 VMMSGLDLERLVLAAGPLGIMQA 285
           + M  L++ERL +AA  LGI +A
Sbjct: 243 IAMETLNVERLGIAAQALGIAEA 265

Length = 393

>gnl|CDD|185640 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; Provisional

 Score =  231 bits (590), Expect = 1e-73
 Identities = 119/294 (40%), Positives = 175/294 (59%), Gaps = 15/294 (5%)

Query: 1   MQRLLGARSLCASFFTKKQKHSAAFSSTSLLFDD------TQLQFKESVGQFARENIAPR 54
           M+R+L   SL     T     +A  +S S  F D           +E+V +F+RE +   
Sbjct: 1   MRRVL-QSSLGRRSATCGWTAAATMTSASRAFMDLYNPTPEHAALRETVAKFSREVVDKH 59

Query: 55  AANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGL 114
           A   D +  F  + +L+K +G+  + G+T P+  GG G+  +   I   E+S+      L
Sbjct: 60  AREDDINMHF--NRDLFKQLGDLGVMGVTVPEADGGAGMDAVAAVIIHHELSKYDPGFCL 117

Query: 115 SYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV- 173
           +Y AHS L +N      SPAQ+ ++LPK+++GEHVGA+ MSEP AG+DV+GM+  A +  
Sbjct: 118 AYLAHSMLFVNNFYYSASPAQRARWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDS 177

Query: 174 DGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGM 233
           +G Y++NG+K+W TNG VA   ++YAK D K     ITAF++E+G  GF+   K+DK GM
Sbjct: 178 NGNYVLNGSKIWITNGTVADVFLIYAKVDGK-----ITAFVVERGTKGFTQGPKIDKCGM 232

Query: 234 RGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQAPV 287
           R S  C+L FE+  VP EN+LG+EGKG+  MM  L+LER+ LAA  +GI +  V
Sbjct: 233 RASHMCQLFFEDVVVPAENLLGEEGKGMVGMMRNLELERVTLAAMAVGIAERSV 286

Length = 410

>gnl|CDD|173838 cd00567, ACAD, Acyl-CoA dehydrogenase

 Score =  216 bits (552), Expect = 6e-69
 Identities = 72/165 (43%), Positives = 108/165 (65%), Gaps = 1/165 (0%)

Query: 122 LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIING 181
           L    L+ +G+  QK++YLP L SGE + A A++EP AGSD+ G++  A +   GY++NG
Sbjct: 43  LGAALLLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTARKDGDGYVLNG 102

Query: 182 NKMWCTNGPVAQTLVVYAKTD-IKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCE 240
            K++ +NG  A   +V A+TD    G +GI+AF++    PG +  +  DK+GMRGS T E
Sbjct: 103 RKIFISNGGDADLFIVLARTDEEGPGHRGISAFLVPADTPGVTVGRIWDKMGMRGSGTGE 162

Query: 241 LVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQA 285
           LVF++  VP +N+LG+EG G  + M GL++ RL+LAA  LG  +A
Sbjct: 163 LVFDDVRVPEDNLLGEEGGGFELAMKGLNVGRLLLAAVALGAARA 207

Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isobutyryl-CoA dehydrogenase (IBDH), glutaryl-CoA deydrogenase (GCD) and Crotonobetainyl-CoA dehydrogenase. The mitochondrial ACAD's are generally homotetramers, except for VLCAD, which is a homodimer. Related enzymes include the SOS adaptive reponse proten aidB, Naphthocyclinone hydroxylase (NcnH), and and Dibenzothiophene (DBT) desulfurization enzyme C (DszC). Length = 327

>gnl|CDD|173849 cd01160, LCAD, Long chain acyl-CoA dehydrogenase

 Score =  216 bits (552), Expect = 2e-68
 Identities = 98/244 (40%), Positives = 157/244 (64%), Gaps = 4/244 (1%)

Query: 39  FKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYH 98
           F++ V +F  + +AP     +++   P++V  W+  G   L G+  P+EYGG+G   L  
Sbjct: 6   FRDVVRRFFAKEVAPFHHEWEKAGEVPREV--WRKAGEQGLLGVGFPEEYGGIGGDLLSA 63

Query: 99  CIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPN 158
            +  EE++RA GS G     H+++    + R GSP QK++ LP++++G+ +GA+AM+EP 
Sbjct: 64  AVLWEELARAGGS-GPGLSLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMTEPG 122

Query: 159 AGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA-GSKGITAFIIEK 217
           AGSD+ G++  A +    Y++NG+K + TNG +A  ++V A+T  +A G+ GI+ F++E+
Sbjct: 123 AGSDLQGIRTTARKDGDHYVLNGSKTFITNGMLADVVIVVARTGGEARGAGGISLFLVER 182

Query: 218 GMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAA 277
           G PGFS  +KL K+G +  DT EL F++C VP EN+LG+E KG Y +M  L  ERL++AA
Sbjct: 183 GTPGFSRGRKLKKMGWKAQDTAELFFDDCRVPAENLLGEENKGFYYLMQNLPQERLLIAA 242

Query: 278 GPLG 281
           G L 
Sbjct: 243 GALA 246

LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer. Length = 372

>gnl|CDD|173850 cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase

 Score =  198 bits (505), Expect = 6e-61
 Identities = 93/287 (32%), Positives = 147/287 (51%), Gaps = 16/287 (5%)

Query: 9   SLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVG----QFARENIAPRAANIDQSNSF 64
           S   + F         F   S+L ++ Q +    +     +F  E   P  A  DQ    
Sbjct: 1   SFALNMFLGDIVTKQVFPYPSVLTEE-QTEELNMLVGPVEKFFEEVNDP--AKNDQLEKI 57

Query: 65  PQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCI 124
           P+       +    L G+  P+EYGGLGL    +    E +        ++ GAH ++  
Sbjct: 58  PRKT--LTQLKELGLFGLQVPEEYGGLGLNNTQYARLAEIVGMD-LGFSVTLGAHQSIGF 114

Query: 125 NQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YIINGN 182
             ++  G+ AQK+KYLPKL SGE + A A++EP++GSD   ++  A   + G  Y++NG+
Sbjct: 115 KGILLFGTEAQKEKYLPKLASGEWIAAFALTEPSSGSDAASIRTTAVLSEDGKHYVLNGS 174

Query: 183 KMWCTNGPVAQTLVVYAKTDIK----AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDT 238
           K+W TNG +A    V+AKT++K    +    ITAFI+E+   G +      K+G++GS+T
Sbjct: 175 KIWITNGGIADIFTVFAKTEVKDATGSVKDKITAFIVERSFGGVTNGPPEKKMGIKGSNT 234

Query: 239 CELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQA 285
            E+ FE+  +P ENVLG+ G G  V M+ L+  R  + A  +G M+ 
Sbjct: 235 AEVYFEDVKIPVENVLGEVGDGFKVAMNILNNGRFGMGAALIGTMKR 281

VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer. Length = 409

>gnl|CDD|173840 cd01151, GCD, Glutaryl-CoA dehydrogenase

 Score =  189 bits (483), Expect = 6e-58
 Identities = 87/254 (34%), Positives = 131/254 (51%), Gaps = 8/254 (3%)

Query: 29  SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEY 88
            LL ++ +   +++  +F +E +APR     +   F +   + + MG   L G T  + Y
Sbjct: 11  DLLTEEERA-IRDTAREFCQEELAPRVLEAYREEKFDRK--IIEEMGELGLLGAT-IKGY 66

Query: 89  GGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEH 148
           G  GL  + + +   E+ R            S+L +  +   GS  QK KYLPKL SGE 
Sbjct: 67  GCAGLSSVAYGLIAREVERVDSGYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASGEL 126

Query: 149 VGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSK 208
           +G   ++EPN GSD  GM+ +A +  GGY +NG+K W TN P+A   VV+A+ D     +
Sbjct: 127 IGCFGLTEPNHGSDPGGMETRARKDGGGYKLNGSKTWITNSPIADVFVVWARNDETGKIR 186

Query: 209 GITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGL 268
           G   FI+E+GM G S  +   K  +R S T E+V +N FVP EN+L    +G+      L
Sbjct: 187 G---FILERGMKGLSAPKIQGKFSLRASITGEIVMDNVFVPEENLL-PGAEGLRGPFKCL 242

Query: 269 DLERLVLAAGPLGI 282
           +  R  +A G LG 
Sbjct: 243 NNARYGIAWGALGA 256

Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans. Length = 386

>gnl|CDD|173846 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase

 Score =  173 bits (441), Expect = 8e-52
 Identities = 99/259 (38%), Positives = 137/259 (52%), Gaps = 12/259 (4%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDV--NLWKLMGNFNLHGITAPQEYG 89
             + Q +F+E+  +FARE I P AA  D+S  +P  +    W+L G  N H    P++ G
Sbjct: 1   LTEQQKEFQETARKFAREEIIPVAAEYDKSGEYPWPLIKRAWEL-GLMNTH---IPEDCG 56

Query: 90  GLGLGYLYHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEH 148
           GLGLG    C+  EE+  A G  G+     +N L    ++  G+  QK KYL ++     
Sbjct: 57  GLGLGTFDTCLITEEL--AYGCTGVQTAIEANSLGQMPVIISGNDEQKKKYLGRMTEEPL 114

Query: 149 VGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK---A 205
           + A  ++EP AGSDV G+K KA++    YIING KMW TNG  A    + A++D      
Sbjct: 115 MCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKCP 174

Query: 206 GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMM 265
            SK  T FI+E   PG    +K   +G R SDT  + FE+  VP ENVL  EG G  + M
Sbjct: 175 ASKAFTGFIVEADTPGIQPGRKELNMGQRCSDTRGITFEDVRVPKENVLIGEGAGFKIAM 234

Query: 266 SGLDLERLVLAAGPLGIMQ 284
              D  R  +AAG +G+ Q
Sbjct: 235 GAFDKTRPPVAAGAVGLAQ 253

MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer. Length = 378

>gnl|CDD|173851 cd01162, IBD, Isobutyryl-CoA dehydrogenase

 Score =  165 bits (420), Expect = 9e-49
 Identities = 85/254 (33%), Positives = 132/254 (51%), Gaps = 4/254 (1%)

Query: 34  DTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGL 93
           + Q   +E    FA + +AP AA+ DQ   FP DV   +        GI    + GG GL
Sbjct: 3   EEQRAIQEVARAFAAKEMAPHAADWDQKKHFPVDV--LRKAAELGFGGIYIRDDVGGSGL 60

Query: 94  GYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALA 153
             L   I  E +S    S   +Y +  N+C   +   G+  Q++++LP L + E + +  
Sbjct: 61  SRLDASIIFEALSTGCVSTA-AYISIHNMCAWMIDSFGNDEQRERFLPDLCTMEKLASYC 119

Query: 154 MSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAF 213
           ++EP +GSD   ++ +A R    Y++NG+K + +    +   VV A+T    G KGI+ F
Sbjct: 120 LTEPGSGSDAAALRTRAVREGDHYVLNGSKAFISGAGDSDVYVVMARTG-GEGPKGISCF 178

Query: 214 IIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERL 273
           ++EKG PG S      K+G     T  ++FE+C VP EN LG EG+G  + M+GL+  RL
Sbjct: 179 VVEKGTPGLSFGANEKKMGWNAQPTRAVIFEDCRVPVENRLGGEGQGFGIAMAGLNGGRL 238

Query: 274 VLAAGPLGIMQAPV 287
            +A+  LG  QA +
Sbjct: 239 NIASCSLGAAQAAL 252

Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer. Length = 375

>gnl|CDD|217220 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal domain

 Score =  151 bits (385), Expect = 1e-46
 Identities = 51/115 (44%), Positives = 74/115 (64%), Gaps = 2/115 (1%)

Query: 33  DDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLG 92
            + Q   +++V +FA E +AP AA  D+   FP++  LW+ +G   L G+T P+EYGG G
Sbjct: 1   TEEQEALRDTVREFAEEEVAPHAAEWDEEGEFPRE--LWRKLGELGLLGLTIPEEYGGAG 58

Query: 93  LGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE 147
           L YL + +  EE++RA  SVGL+   HS+L    ++R G+  QK+KYLPKL SGE
Sbjct: 59  LDYLEYALVAEELARADASVGLALSVHSSLVAPPILRFGTEEQKEKYLPKLASGE 113

The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain. Length = 113

>gnl|CDD|173841 cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26

 Score =  139 bits (351), Expect = 1e-38
 Identities = 56/201 (27%), Positives = 99/201 (49%), Gaps = 6/201 (2%)

Query: 81  GITAPQEYGGLGLGYLYHCIAMEEISRASGSV-GLSYGAHSNLCINQLVRHGSPAQKDKY 139
               P+EYGG G   +   I  EE++ A   V     G    L    ++ +G+  QK ++
Sbjct: 51  APGWPKEYGGRGASLMEQLIFREEMAAAGAPVPFNQIGID--LAGPTILAYGTDEQKRRF 108

Query: 140 LPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYA 199
           LP ++SGE +     SEP AGSD+ G++ +A R    +++NG K+W +    A    +  
Sbjct: 109 LPPILSGEEIWCQGFSEPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTSGAHYADWAWLLV 168

Query: 200 KTDIKAGS-KGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEG 258
           +TD +A   +GI+  +++   PG  T + +  +   G    E+  ++  VP+ N +G+  
Sbjct: 169 RTDPEAPKHRGISILLVDMDSPGV-TVRPIRSI-NGGEFFNEVFLDDVRVPDANRVGEVN 226

Query: 259 KGVYVMMSGLDLERLVLAAGP 279
            G  V M+ L+ ER+ +    
Sbjct: 227 DGWKVAMTTLNFERVSIGGSA 247

Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position. Length = 380

>gnl|CDD|132251 TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-CoA dehydrogenase

 Score =  133 bits (337), Expect = 1e-36
 Identities = 82/247 (33%), Positives = 131/247 (53%), Gaps = 7/247 (2%)

Query: 41  ESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCI 100
           ++  +FARE IAP     D++     D  L + MG     G   P+E+GGLG+G L   +
Sbjct: 10  DTARRFARERIAPGFKERDKTRVL--DRELMRDMGEMGFIGPELPEEHGGLGMGCLAAGV 67

Query: 101 AMEEISRASGSVGLSY-GAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNA 159
             E+I+RA  S+  SY    ++L    L +H  P     +L +LI+GE + A+A++EP  
Sbjct: 68  IHEQIARADLSM--SYVNLLASLNGQILAQHARPEIAKPWLGQLIAGEALFAIALTEPRG 125

Query: 160 GSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT-DIKAGSKGITAFIIEKG 218
           GSD   ++ +A+R    Y++NG K   +    A   VV+A+T     G++GI+AF++   
Sbjct: 126 GSDAARLRLRAERDGDDYVLNGEKTSISAADQADAAVVFARTGSEAEGARGISAFLVPMD 185

Query: 219 MPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAG 278
           +PG  T  + D  G R      + FEN  VP +++LG EG+G   +M G D  R ++   
Sbjct: 186 LPGI-TRNRFDCHGQRAIGRGSIFFENVRVPADHMLGNEGQGFVQVMQGFDFSRALIGLQ 244

Query: 279 PLGIMQA 285
            L + +A
Sbjct: 245 VLAVARA 251

Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase. Length = 372

>gnl|CDD|173842 cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5

 Score =  124 bits (314), Expect = 5e-33
 Identities = 75/266 (28%), Positives = 126/266 (47%), Gaps = 27/266 (10%)

Query: 41  ESVGQFARENIAPRAANIDQ--------SNSFPQDV--NLWKLMGNFNLHGITAPQEYGG 90
           E V + A   +AP  A+ D+            P      L           +  P+EYGG
Sbjct: 3   EEVARLAENVLAPLNADGDREGPVFDDGRVVVPPPFKEALDAFAEA-GWMALGVPEEYGG 61

Query: 91  LGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVG 150
            GL    +    E  SR    +  + G         L+ HG+ AQ++K++P+L  GE  G
Sbjct: 62  QGLPITVYSALAEIFSRGDAPLMYASGTQG--AAATLLAHGTEAQREKWIPRLAEGEWTG 119

Query: 151 ALAMSEPNAGSDVVGMKCKAD-RVDGGYIINGNKMWCTNGPVAQTL----VVYAKT-DIK 204
            + ++EP+AGSD+  ++ KA  + DG + ING K + + G    +     +V A++    
Sbjct: 120 TMCLTEPDAGSDLGALRTKAVYQADGSWRINGVKRFISAGEHDMSENIVHLVLARSEGAP 179

Query: 205 AGSKGITAFIIEK----GMPGFSTAQKLD-KLGMRGSDTCELVFENCFVPNENVLGQEGK 259
            G KG++ F++ K    G     T  +++ K+G+ GS TCELVF+N       ++G+EG 
Sbjct: 180 PGVKGLSLFLVPKFLDDGERNGVTVARIEEKMGLHGSPTCELVFDNAKGE---LIGEEGM 236

Query: 260 GVYVMMSGLDLERLVLAAGPLGIMQA 285
           G+  M + ++  RL +     G+ +A
Sbjct: 237 GLAQMFAMMNGARLGVGTQGTGLAEA 262

Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position. Length = 407

>gnl|CDD|178141 PLN02526, PLN02526, acyl-coenzyme A oxidase

 Score =  123 bits (309), Expect = 2e-32
 Identities = 75/245 (30%), Positives = 121/245 (49%), Gaps = 17/245 (6%)

Query: 43  VGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAM 102
           V +   + +AP      +   FP   ++   +G+  + G T  + YG  GL      IA 
Sbjct: 40  VRECMEKEVAPIMTEYWEKAEFP--FHIIPKLGSLGIAGGTI-KGYGCPGLSITASAIAT 96

Query: 103 EEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSD 162
            E++R   S       HS+L +  +   GS AQK KYLP L   + V   A++EP+ GSD
Sbjct: 97  AEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSD 156

Query: 163 VVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGF 222
              +   A +V+GG+I+NG K W  N   A  LV++A+      +  I  FI++KG PG 
Sbjct: 157 ASSLNTTATKVEGGWILNGQKRWIGNSTFADVLVIFARN---TTTNQINGFIVKKGAPGL 213

Query: 223 STAQKLDKLGMRGSDTCELVFENCFVPNENVLG-----QEGKGVYVMMSGLDLERLVLAA 277
              +  +K+G+R     ++V ++ FVP+E+ L      Q+   V      L + R+++A 
Sbjct: 214 KATKIENKIGLRMVQNGDIVLKDVFVPDEDRLPGVNSFQDTNKV------LAVSRVMVAW 267

Query: 278 GPLGI 282
            P+GI
Sbjct: 268 QPIGI 272

Length = 412

>gnl|CDD|183454 PRK12341, PRK12341, putative acyl-CoA dehydrogenase; Provisional

 Score =  112 bits (283), Expect = 7e-29
 Identities = 64/231 (27%), Positives = 110/231 (47%), Gaps = 12/231 (5%)

Query: 59  DQSNSFPQDVNLWK-LMGN-FNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSY 116
           D++ ++P++    + L  N  ++ G+  P+E+GG    Y+   + +EE+S+        +
Sbjct: 33  DENGTYPRE--FMRALADNGISMLGV--PEEFGGTPADYVTQMLVLEEVSKCGAPA---F 85

Query: 117 GAHSNLCINQLVRHGSPAQKDK-YLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDG 175
              +  CI+ + R GS  Q  K     L +G+   ALA++EP AGSD         R +G
Sbjct: 86  LITNGQCIHSMRRFGSAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNG 145

Query: 176 GYIINGNKMWCTNGPVAQTLVVYAK-TDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMR 234
              +NG K + T       ++V A+    K   K  T + ++   PG      L K+G  
Sbjct: 146 KVYLNGQKTFITGAKEYPYMLVLARDPQPKDPKKAFTLWWVDSSKPGIKI-NPLHKIGWH 204

Query: 235 GSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQA 285
              TCE+  +N  V   +++G+EG G   +M   ++ERL+ AA  LG  + 
Sbjct: 205 MLSTCEVYLDNVEVEESDLVGEEGMGFLNVMYNFEMERLINAARSLGFAEC 255

Length = 381

>gnl|CDD|179566 PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated

 Score =  108 bits (272), Expect = 2e-27
 Identities = 65/248 (26%), Positives = 115/248 (46%), Gaps = 7/248 (2%)

Query: 31  LFDDTQLQFKESVGQF-ARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYG 89
           L D+ +L F   + +  A EN     A  D+ + +P+     K + +  +  +  P+E+G
Sbjct: 5   LNDEQEL-FVAGIRELMASENWEAYFAECDRDSVYPE--RFVKALADMGIDSLLIPEEHG 61

Query: 90  GLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHV 149
           GL  G++       E+ R      + Y        N  +R G+  Q DK +    +G+ +
Sbjct: 62  GLDAGFVTLAAVWMELGRLGAPTYVLYQLPGG--FNTFLREGTQEQIDKIMAFRGTGKQM 119

Query: 150 GALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG 209
              A++EP AGSDV  +K    R +G   +NG+K + T+      +VV A+         
Sbjct: 120 WNSAITEPGAGSDVGSLKTTYTRRNGKVYLNGSKCFITSSAYTPYIVVMARDGASPDKPV 179

Query: 210 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLD 269
            T + ++   PG     KL+KLG+R    CE+ F++  +  +++ G+EG G   +    D
Sbjct: 180 YTEWFVDMSKPGI-KVTKLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFD 238

Query: 270 LERLVLAA 277
            ER ++A 
Sbjct: 239 HERFLVAL 246

Length = 380

>gnl|CDD|132248 TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, large subunit

 Score = 99.3 bits (247), Expect = 9e-24
 Identities = 63/237 (26%), Positives = 115/237 (48%), Gaps = 12/237 (5%)

Query: 30  LLFDDTQLQFKESVGQFARENIAP--RAANIDQSNSFPQDVNLWKLMGNFNLHGITA-PQ 86
           L F   +  F++ V  F ++N+    R   ++  +    ++  W  + N    G++  P+
Sbjct: 2   LAFSKEEQAFRDEVRSFFKDNVPADTRQKLVEGRHLTKDEMVTWWRILNKKGWGVSHWPK 61

Query: 87  EYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISG 146
           +YGG G   + H I  EE+  A     L++G   ++    +   G+  QK ++LP++ + 
Sbjct: 62  QYGGTGWTSVQHYIFNEELQSAPAPQPLAFGV--SMVGPVIYTFGNEEQKKRFLPRIANV 119

Query: 147 EHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAG 206
           +       SEP +GSD+  +K KA++    +IING K W T    A  +    +TD  A 
Sbjct: 120 DDWWCQGFSEPGSGSDLASLKTKAEKKGDKWIINGQKTWTTLAQHADWIFCLCRTDPTAK 179

Query: 207 SK-GITAFIIEKGMPGFST--AQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
            + GI+  +++    G +    Q +D     G +  E+ F++  VP EN++G+E KG
Sbjct: 180 KQMGISFILVDMKSKGITVRPIQTIDG----GVEVNEVFFDDVEVPYENLVGEENKG 232

Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris. Length = 395

>gnl|CDD|185635 PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provisional

 Score = 96.5 bits (240), Expect = 2e-22
 Identities = 66/213 (30%), Positives = 109/213 (51%), Gaps = 28/213 (13%)

Query: 81  GITAPQEYGGLGLGYLYHCIAMEEISRASGSV----GLSYGAHSNLCINQLVRHGSPAQK 136
           GI+ P+EYGG  L      I  E ++ A+       GLS GA      N L+  GS  QK
Sbjct: 115 GISEPEEYGGQALPLSVGFITRELMATANWGFSMYPGLSIGA-----ANTLMAWGSEEQK 169

Query: 137 DKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWCTNGPVAQT- 194
           ++YL KL+SGE  G + ++EP  G+D+  +K KA+   DG Y I G K++ + G    T 
Sbjct: 170 EQYLTKLVSGEWSGTMCLTEPQCGTDLGQVKTKAEPSADGSYKITGTKIFISAGDHDLTE 229

Query: 195 ---LVVYAKT-DIKAGSKGITAFIIEKGMP----GFSTAQKLD------KLGMRGSDTCE 240
               +V A+  +    +KG++ F++ + +        TA+ +       K+G++GS TC+
Sbjct: 230 NIVHIVLARLPNSLPTTKGLSLFLVPRHVVKPDGSLETAKNVKCIGLEKKMGIKGSSTCQ 289

Query: 241 LVFENCFVPNENVLGQEGKGVYVMMSGLDLERL 273
           L FEN       ++G+   G+  M + ++  R+
Sbjct: 290 LSFEN---SVGYLIGEPNAGMKQMFTFMNTARV 319

Length = 622

>gnl|CDD|145755 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain

 Score = 77.5 bits (192), Expect = 1e-18
 Identities = 21/52 (40%), Positives = 33/52 (63%)

Query: 151 ALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD 202
           A A++EP AGSD+  ++  A+R   G+++NG K W TN  +A   +V A+T 
Sbjct: 1   AFALTEPGAGSDLASLETTAERDGDGWVLNGRKWWITNAALADLALVLARTG 52

Central domain of Acyl-CoA dehydrogenase has a beta-barrel fold. Length = 52

>gnl|CDD|173843 cd01154, AidB, Proteins involved in DNA damage response, similar to the AidB gene product

 Score = 77.4 bits (191), Expect = 4e-16
 Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 14/167 (8%)

Query: 127 LVRHGSPAQKDKYLPKLISGEHVGALA---MSEPNAGSDVVGMKCKADRVDGG-YIINGN 182
           L ++G    K      L      G L    M+E   GSD+   +  A+R  GG Y +NG+
Sbjct: 123 LRKYGPEELKQYLPGLLSDRYKTGLLGGTWMTEKQGGSDLGANETTAERSGGGVYRLNGH 182

Query: 183 KMWCTNGPVAQTLVVYAKT-DIKAGSKGITAFIIEKGMP-----GFSTAQKLDKLGMRGS 236
           K W  + P+A   +V A+     AG++G++ F++ + +      G+   +  DKLG R  
Sbjct: 183 K-WFASAPLADAALVLARPEGAPAGARGLSLFLVPRLLEDGTRNGYRIRRLKDKLGTRSV 241

Query: 237 DTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIM 283
            T E+ F++       ++G EGKG+Y ++  L++ RL  A   LGIM
Sbjct: 242 ATGEVEFDDAEA---YLIGDEGKGIYYILEMLNISRLDNAVAALGIM 285

AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates. Length = 418

>gnl|CDD|185636 PTZ00457, PTZ00457, acyl-CoA dehydrogenase; Provisional

 Score = 75.7 bits (186), Expect = 2e-15
 Identities = 69/215 (32%), Positives = 90/215 (41%), Gaps = 24/215 (11%)

Query: 78  NLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKD 137
           NL+G     EYGGLGLG+  H +  EE+     S  LS   HS  C   L   GS   K 
Sbjct: 64  NLYGARIATEYGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCTYLLSTVGSKELKG 123

Query: 138 KYLPKLISGEHVGALAMSEPNAGSDVVGMKCKAD-RVDGGYIINGNKMWCTNGPVAQTLV 196
           KYL  +  G  +   A  E   GSD+     KA    DG Y++ G K  C     A   +
Sbjct: 124 KYLTAMSDGTIMMGWATEEGC-GSDISMNTTKASLTDDGSYVLTGQKR-CEFAASATHFL 181

Query: 197 VYAKTDIKAGSKG-------ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVP 249
           V AKT  +  ++         + FI  K   G S                 +VFEN   P
Sbjct: 182 VLAKTLTQTAAEEGATEVSRNSFFICAKDAKGVSVNGDS------------VVFEN--TP 227

Query: 250 NENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQ 284
             +V+G  G+G    M  L  E+ + AA  LGIM+
Sbjct: 228 AADVVGVVGEGFKDAMITLFTEQYLYAASLLGIMK 262

Length = 520

>gnl|CDD|173852 cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C

 Score = 72.7 bits (179), Expect = 2e-14
 Identities = 62/249 (24%), Positives = 106/249 (42%), Gaps = 24/249 (9%)

Query: 46  FARENIAPRAANIDQSNSFP-QDVNLWKLMGNFNLHGITAPQEYGGLGLGY--LYHCIAM 102
            AR  IA  AA  D+    P ++V L +  G   L  +  P+EYGGLG     LY  +  
Sbjct: 7   AAR--IAEGAAERDRQRGLPYEEVALLRQSG---LGTLRVPKEYGGLGASLPDLYEVVR- 60

Query: 103 EEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSE---PNA 159
            E++ A  ++  +  AH    +  L+  G    + ++  ++++G   G  A+SE      
Sbjct: 61  -ELAAADSNIAQALRAHFGF-VEALLLAGPEQFRKRWFGRVLNGWIFGN-AVSERGSVRP 117

Query: 160 GSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGM 219
           G+ +        R  GGY++NG K + T    +  + V A  +   G   +    +    
Sbjct: 118 GTFLT----ATVRDGGGYVLNGKKFYSTGALFSDWVTVSALDE--EGK--LVFAAVPTDR 169

Query: 220 PGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGP 279
           PG +     D  G R + +  + F+N  V  + VL +        +    + +LVLAA  
Sbjct: 170 PGITVVDDWDGFGQRLTASGTVTFDNVRVEPDEVLPRPNAPDRGTLLTA-IYQLVLAAVL 228

Query: 280 LGIMQAPVR 288
            GI +A + 
Sbjct: 229 AGIARAALD 237

DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup. Length = 377

>gnl|CDD|173844 cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2

 Score = 72.4 bits (178), Expect = 2e-14
 Identities = 44/156 (28%), Positives = 69/156 (44%), Gaps = 37/156 (23%)

Query: 127 LVRHGSPAQKDKYLPKLISGEHVGALAMSEPN-AGSDVVGMKCKADRVDGGYIINGNKMW 185
           L R+GS  QK ++L  L+ G+   A AM+EP+ A SD   ++C  +R    Y+ING K W
Sbjct: 104 LHRYGSEEQKKQWLEPLLDGKIRSAFAMTEPDVASSDATNIECSIERDGDDYVINGRKWW 163

Query: 186 CTNG--PVAQTLVVYAKTD--------------IKAGSKGITAFIIEKGMPGFSTAQKLD 229
            +    P  +  +V  +TD              +   + G+T   I + +  F       
Sbjct: 164 SSGAGDPRCKIAIVMGRTDPDGAPRHRQQSMILVPMDTPGVT---IIRPLSVF------- 213

Query: 230 KLGMRGSDT-----CELVFENCFVPNENVLGQEGKG 260
                G D       E+ F+N  VP  N++  EG+G
Sbjct: 214 -----GYDDAPHGHAEITFDNVRVPASNLILGEGRG 244

FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position. Length = 394

>gnl|CDD|215473 PLN02876, PLN02876, acyl-CoA dehydrogenase

 Score = 72.1 bits (177), Expect = 4e-14
 Identities = 47/141 (33%), Positives = 72/141 (51%), Gaps = 8/141 (5%)

Query: 127 LVRHGSPAQKDKYLPKLISGEHVGALAMSEPN-AGSDVVGMKCKADRVDGGYIINGNKMW 185
           L+R+G+  Q+ ++L  L+ G+     AM+EP  A SD   ++C   R    Y+ING K W
Sbjct: 529 LLRYGNKEQQLEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIRRQGDSYVINGTKWW 588

Query: 186 CTNG---PVAQTLVVYAKTDIKAGS-KGITAFIIEKGMPGFSTAQKLDKLGMRGS--DTC 239
            T+G   P  + L+V  KTD  A   K  +  +++   PG    + L   G   +     
Sbjct: 589 -TSGAMDPRCRVLIVMGKTDFNAPKHKQQSMILVDIQTPGVQIKRPLLVFGFDDAPHGHA 647

Query: 240 ELVFENCFVPNENVLGQEGKG 260
           E+ FEN  VP +N+L  EG+G
Sbjct: 648 EISFENVRVPAKNILLGEGRG 668

Length = 822

>gnl|CDD|132247 TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, small subunit

 Score = 68.9 bits (168), Expect = 3e-13
 Identities = 59/217 (27%), Positives = 94/217 (43%), Gaps = 10/217 (4%)

Query: 70  LWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVR 129
           +W  +    L G+   +  GG G G +   I ME + +A   V   Y A   +    L  
Sbjct: 42  VWGKLAEQGLLGLPFSEADGGFGAGSVETMIVMEALGKAL--VLEPYLATVVIGGGFLRH 99

Query: 130 HGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNG 189
            GS AQK  +LP +I G    A A  E N+  D+  +   A +   G++I+G K    NG
Sbjct: 100 AGSAAQKAAHLPGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKKTGDGWVIDGEKFVVLNG 159

Query: 190 PVAQTLVVYAKTDIKAGSK---GITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENC 246
             A TL+V A+T  K   +   GI  F++  G  G +      + G+  +D   + F   
Sbjct: 160 ETADTLIVTART--KGARRDRTGIGVFLVPAGAKGVTIKGYPTQDGLHAAD---ITFTGV 214

Query: 247 FVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIM 283
            V  +  +G     + ++   +D  R  L A  +G+M
Sbjct: 215 VVGADAAIGDPENALPLIERVVDDARAALCAEAVGLM 251

Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris. Length = 378

>gnl|CDD|237277 PRK13026, PRK13026, acyl-CoA dehydrogenase; Reviewed

 Score = 66.9 bits (164), Expect = 2e-12
 Identities = 56/216 (25%), Positives = 96/216 (44%), Gaps = 47/216 (21%)

Query: 85  PQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRH-GSPAQKDKYLPKL 143
           P+EYGG G     +   + +I+  S S  ++    ++L   +L+ H G+  QKD +LP+L
Sbjct: 128 PKEYGGKGFSAYANSTIVSKIATRSVSAAVTVMVPNSLGPGELLTHYGTQEQKDYWLPRL 187

Query: 144 ISGEHVGALAMSEPNAGSDV-----VGMKCKADRVDG----GYIINGNKMWCTNGPVAQT 194
             G  +   A++ P AGSD       G+ C+ +  +G    G  +  +K + T  PVA T
Sbjct: 188 ADGTEIPCFALTGPEAGSDAGAIPDTGIVCRGE-FEGEEVLGLRLTWDKRYITLAPVA-T 245

Query: 195 LVVYA------------KTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGM-------RG 235
           ++  A            K ++     GIT  +I    PG    ++ + LGM       RG
Sbjct: 246 VLGLAFKLRDPDGLLGDKKEL-----GITCALIPTDHPGVEIGRRHNPLGMAFMNGTTRG 300

Query: 236 SDTCELVFENCFVPNENVLG---QEGKGVYVMMSGL 268
            D         F+P + ++G     G+G  +++  L
Sbjct: 301 KDV--------FIPLDWIIGGPDYAGRGWRMLVECL 328

Length = 774

>gnl|CDD|236528 PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed

 Score = 64.8 bits (159), Expect = 8e-12
 Identities = 58/213 (27%), Positives = 91/213 (42%), Gaps = 57/213 (26%)

Query: 85  PQEYGGLGL-GYLYHCIAMEEISR---ASGSVGL--SYGAHSNLCINQLVRHGSPAQKDK 138
           P+EYGGL    Y +  +  +  SR    + +V +  S G    L    L+ +G+  QKD 
Sbjct: 129 PKEYGGLEFSAYAHSRVLQKLASRSGTLAVTVMVPNSLGP-GEL----LLHYGTDEQKDH 183

Query: 139 YLPKLISGEHVGALAMSEPNAGSDV-----VGMKCKADRVDG----GYIINGNKMWCTNG 189
           YLP+L  GE +   A++ P AGSD       G+ CK +   G    G  +  NK + T  
Sbjct: 184 YLPRLARGEEIPCFALTSPEAGSDAGSIPDTGVVCKGE-WQGEEVLGMRLTWNKRYITLA 242

Query: 190 PVAQTLVVYA------------KTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSD 237
           P+A T++  A            K D+     GIT  +I    PG    ++   L      
Sbjct: 243 PIA-TVLGLAFKLYDPDGLLGDKEDL-----GITCALIPTDTPGVEIGRRHFPLN----- 291

Query: 238 TCELVFENC-------FVPNENVLG-QE--GKG 260
              + F+N        F+P + ++G  +  G+G
Sbjct: 292 ---VPFQNGPTRGKDVFIPLDYIIGGPKMAGQG 321

Length = 777

>gnl|CDD|188537 TIGR04022, sulfur_SfnB, sulfur acquisition oxidoreductase, SfnB family

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 62/226 (27%), Positives = 97/226 (42%), Gaps = 39/226 (17%)

Query: 38  QFKESVGQFARENIAPRAANIDQ-SNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGY- 95
           +F     +  RE   P A  +D  S S      LW         GIT P+ YGG G+ Y 
Sbjct: 20  EFAPGAAERDRERRLPWA-ELDAFSQS-----GLW---------GITVPRAYGGAGVSYA 64

Query: 96  -LYHCIAMEEISRASGSVGLSYGAHSNLCINQLVR-HGSPAQKDKYLPKLISGEHVGALA 153
            L   IA+  IS A  S+G     H      +++R  GS  QK  +  ++++GE  G   
Sbjct: 65  TLAEVIAI--ISAADPSLGQIPQNH--FYALEVLRLTGSEEQKRFFFGEVLAGERFG--- 117

Query: 154 MSEPNAGSD-----VVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSK 208
               NA S+     V+  + +  R   GY +NG K + T    A  + V A  D   G +
Sbjct: 118 ----NAFSERGTRNVLDFQTRLRRDGDGYRLNGRKFYSTGALFAHWIPVLALDD--DG-R 170

Query: 209 GITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVL 254
            + AF + +  PG +        G R + +  ++ ++  VP E+V+
Sbjct: 171 PVLAF-VPRDAPGLTVIDDWSGFGQRTTASGTVLLDDVRVPAEHVV 215

Members of this protein family belong to the greater family of acyl-CoA dehydrogenases. This family includes the sulfate starvation induced protein SfnB of Pseudomonas putida strain DS1, which is both encoded nearby to and phylogenetically closely correlated with the dimethyl sulphone monooxygenase SfnG. This family shows considerable sequence similarity to the Rhodococcus dibenzothiophene desulfurization enzyme DszC, although that enzyme falls outside of the scope of this family [Central intermediary metabolism, Sulfur metabolism]. Length = 391

>gnl|CDD|215342 PLN02636, PLN02636, acyl-coenzyme A oxidase

 Score = 59.1 bits (143), Expect = 7e-10
 Identities = 46/178 (25%), Positives = 80/178 (44%), Gaps = 21/178 (11%)

Query: 102 MEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGS 161
            E +     S+G+  G   +L    ++  G+   +DKY   + + ++ G  AM+E + GS
Sbjct: 127 TEAVGSVDMSLGIKLGVQYSLWGGSVINLGTKKHRDKYFDGIDNLDYPGCFAMTELHHGS 186

Query: 162 DVVGMKCKA--DRVDGGYIIN-----GNKMWCTNGPV-AQTLVVYAKT-----DIKAGSK 208
           +V G++  A  D +   ++IN       K W  N  V  +   V+A+      D K  S 
Sbjct: 187 NVQGLQTTATFDPLTDEFVINTPNDGAIKWWIGNAAVHGKFATVFARLKLPTHDSKGVSD 246

Query: 209 -GITAFII-------EKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEG 258
            G+ AFI+        + +PG        K+G+ G D   L F +  +P +N+L + G
Sbjct: 247 MGVHAFIVPIRDMKTHQVLPGVEIRDCGHKVGLNGVDNGALRFRSVRIPRDNLLNRFG 304

Length = 686

>gnl|CDD|173848 cd01159, NcnH, Naphthocyclinone hydroxylase

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 43/207 (20%), Positives = 80/207 (38%), Gaps = 24/207 (11%)

Query: 51  IAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASG 110
           I  RA   +++   P +V   + +       +  P+ YGGL   +     A+  ++ A G
Sbjct: 10  IRERAPEAERARRLPDEV--VRALREIGFFRMFVPKRYGGLEGDFAEFAEAIATLAEACG 67

Query: 111 SVG---LSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMK 167
           S          HS      L      AQ++ +      G+    L        +      
Sbjct: 68  SAAWVASIVATHSR----MLAAFPPEAQEEVW------GDGPDTLL-------AGSYAPG 110

Query: 168 CKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQK 227
            +A+RVDGGY ++G   + +    A  ++V A  +   G     AF++ +    +     
Sbjct: 111 GRAERVDGGYRVSGTWPFASGCDHADWILVGAIVEDDDGGPLPRAFVVPRA--EYEIVDT 168

Query: 228 LDKLGMRGSDTCELVFENCFVPNENVL 254
              +G+RG+ +  +V ++ FVP    L
Sbjct: 169 WHVVGLRGTGSNTVVVDDVFVPEHRTL 195

Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides. Length = 370

>gnl|CDD|173839 cd01150, AXO, Peroxisomal acyl-CoA oxidase

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 52/185 (28%), Positives = 82/185 (44%), Gaps = 23/185 (12%)

Query: 102 MEEISRASGSVGLSYGA----HSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEP 157
           M  ++ + G   LS GA    H  L  N +   G+   +D +L    + E +G  A +E 
Sbjct: 84  MLALTNSLGGYDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTEL 143

Query: 158 NAGSDVVGMKCKA--DRVDGGYIIN-----GNKMWCTN-GPVAQTLVVYAKTDIKAGSKG 209
             GS++ G++  A  D +   ++IN       K W  N G  A   VV+A+      + G
Sbjct: 144 GHGSNLQGLETTATYDPLTQEFVINTPDFTATKWWPGNLGKTATHAVVFAQLITPGKNHG 203

Query: 210 ITAFIIE-------KGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGK--- 259
           + AFI+        + +PG +      K+G+ G D   L F N  +P EN+L + G    
Sbjct: 204 LHAFIVPIRDPKTHQPLPGVTVGDIGPKMGLNGVDNGFLQFRNVRIPRENLLNRFGDVSP 263

Query: 260 -GVYV 263
            G YV
Sbjct: 264 DGTYV 268

Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment. Length = 610

>gnl|CDD|183199 PRK11561, PRK11561, isovaleryl CoA dehydrogenase; Provisional

 Score = 50.5 bits (121), Expect = 4e-07
 Identities = 45/163 (27%), Positives = 80/163 (49%), Gaps = 19/163 (11%)

Query: 132 SPAQKDKYLPKLISGEHVGAL----AMSEPNAGSDVVGMKCKADRVDGG-YIINGNKMWC 186
           +P   D+Y   L+ G     L     M+E   GSDV+    +A+R+  G Y + G+K W 
Sbjct: 158 TPLLSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVLSNTTRAERLADGSYRLVGHK-WF 216

Query: 187 TNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMP-GFSTAQKL----DKLGMRGSDTCEL 241
            + P +   +V A+        G++ F + + +P G   A +L    DKLG R + + E+
Sbjct: 217 FSVPQSDAHLVLAQAK-----GGLSCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASSEV 271

Query: 242 VFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQ 284
            F++       +LG+EG+G+ +++    + R   A G  G+M+
Sbjct: 272 EFQDA---IGWLLGEEGEGIRLILKMGGMTRFDCALGSHGLMR 311

Length = 538

>gnl|CDD|185639 PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provisional

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 15/154 (9%)

Query: 116 YGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA--DRV 173
              H  + I      G+  Q + ++P L++ E VG  A +E   GSDV  ++  A  D+ 
Sbjct: 95  STVHFAMVIPAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQ 154

Query: 174 DGGYIIN-----GNKMWCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIE-------KGMP 220
              ++I+       K W    G +    +VYAK  +   +KG+  F++        K + 
Sbjct: 155 TNEFVIHTPSVEAVKFWPGELGFLCNFALVYAKLIVNGKNKGVHPFMVRIRDKETHKPLQ 214

Query: 221 GFSTAQKLDKLGMRGSDTCELVFENCFVPNENVL 254
           G        K+G    D   L F++  +P +++L
Sbjct: 215 GVEVGDIGPKMGYAVKDNGFLSFDHYRIPLDSLL 248

Length = 646

>gnl|CDD|215178 PLN02312, PLN02312, acyl-CoA oxidase

 Score = 44.0 bits (104), Expect = 5e-05
 Identities = 44/175 (25%), Positives = 70/175 (40%), Gaps = 23/175 (13%)

Query: 96  LYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMS 155
           L   I + + S A     +  G H  L    +   G+    DK+L         G  AM+
Sbjct: 138 LLEVIGIYDHSLA-----IKLGVHFFLWGGAIKFLGTKRHHDKWLKDTEDYVVKGCFAMT 192

Query: 156 EPNAGSDVVGMKCKA--DRVDGGYIIN-----GNKMWCTNGPVAQT---LVVYAKTDIKA 205
           E   GS+V G++     D     ++IN       K W   G  A      +V+++  I  
Sbjct: 193 ELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWI--GGAANHATHTIVFSQLHING 250

Query: 206 GSKGITAFIIE------KGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVL 254
            ++G+ AFI +         P    A    K+G+ G D   + F+N  +P EN+L
Sbjct: 251 KNEGVHAFIAQIRDQDGNICPNIRIADCGHKIGLNGVDNGRIWFDNLRIPRENLL 305

Length = 680

>gnl|CDD|201229 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal domain

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 258 GKGVYVMMSGLDLERLVLAAGPLGIMQAPVR 288
           G+G  V M  L+ ERL++AA  LG+ +  + 
Sbjct: 1   GRGFAVAMETLNHERLLIAAAALGLARRALD 31

C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle. Length = 150

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	288
KOG0139	398	consensus Short-chain acyl-CoA dehydrogenase [Lipi	100.0
KOG0141	421	consensus Isovaleryl-CoA dehydrogenase [Amino acid	100.0
KOG0140	408	consensus Medium-chain acyl-CoA dehydrogenase [Lip	100.0
PLN02519	404	isovaleryl-CoA dehydrogenase	100.0
cd01151	386	GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehyd	100.0
cd01156	376	IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA d	100.0
PRK03354	380	crotonobetainyl-CoA dehydrogenase; Validated	100.0
cd01162	375	IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA d	100.0
cd01157	378	MCAD Medium chain acyl-CoA dehydrogenase. MCADs ar	100.0
cd01160	372	LCAD Long chain acyl-CoA dehydrogenase. LCAD is an	100.0
PTZ00461	410	isovaleryl-CoA dehydrogenase; Provisional	100.0
TIGR03207	372	cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogen	100.0
PRK12341	381	putative acyl-CoA dehydrogenase; Provisional	100.0
cd01158	373	SCAD_SBCAD Short chain acyl-CoA dehydrogenases and	100.0
cd01161	409	VLCAD Very long chain acyl-CoA dehydrogenase. VLCA	100.0
PLN02526	412	acyl-coenzyme A oxidase	100.0
TIGR03203	378	pimD_small pimeloyl-CoA dehydrogenase, small subun	100.0
PRK09463	777	fadE acyl-CoA dehydrogenase; Reviewed	100.0
PRK13026	774	acyl-CoA dehydrogenase; Reviewed	100.0
TIGR03204	395	pimC_large pimeloyl-CoA dehydrogenase, large subun	100.0
cd01155	394	ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE	100.0
cd01153	407	ACAD_fadE5 Putative acyl-CoA dehydrogenases simila	100.0
COG1960	393	CaiA Acyl-CoA dehydrogenases [Lipid metabolism]	100.0
cd01152	380	ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases	100.0
cd01163	377	DszC Dibenzothiophene (DBT) desulfurization enzyme	100.0
PLN02876	822	acyl-CoA dehydrogenase	100.0
KOG0137	634	consensus Very-long-chain acyl-CoA dehydrogenase [	100.0
PTZ00456	622	acyl-CoA dehydrogenase; Provisional	100.0
KOG0138	432	consensus Glutaryl-CoA dehydrogenase [Amino acid t	100.0
PLN02636	686	acyl-coenzyme A oxidase	100.0
PTZ00457	520	acyl-CoA dehydrogenase; Provisional	100.0
PLN02312	680	acyl-CoA oxidase	100.0
cd01154	418	AidB Proteins involved in DNA damage response, sim	100.0
cd01159	370	NcnH Naphthocyclinone hydroxylase. Naphthocyclinon	100.0
cd00567	327	ACAD Acyl-CoA dehydrogenase. Both mitochondrial ac	100.0
KOG1469	392	consensus Predicted acyl-CoA dehydrogenase [Genera	99.97
cd01150	610	AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl	99.96
PRK11561	538	isovaleryl CoA dehydrogenase; Provisional	99.96
PTZ00460	646	acyl-CoA dehydrogenase; Provisional	99.95
PLN02443	664	acyl-coenzyme A oxidase	99.94
KOG0135	661	consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid t	99.82
PF02771	113	Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal	99.82
TIGR02309	477	HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxy	99.58
PF02770	52	Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle doma	99.57
KOG0136	670	consensus Acyl-CoA oxidase [Lipid transport and me	99.56
PF11794	264	HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N ter	98.7
COG2368	493	Aromatic ring hydroxylase [Secondary metabolites b	98.47
TIGR02310	519	HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxy	98.44
PF14749	125	Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal;	89.79

>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=100.00  E-value=1.2e-53  Score=363.10  Aligned_cols=280  Identities=38%  Similarity=0.642  Sum_probs=258.7

Q ss_pred             ccccccccccccccccccccccCCCCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCC
Q 023057            3 RLLGARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGI   82 (288)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~   82 (288)
                      |+...++.+.+..+.....  .+.+-..++|++. ++++++|+|+++.+.|.++++|++..+|.  ...+.+.++|++++
T Consensus        11 ~~~~~~ss~~~a~~~~~~~--~~~pl~~l~E~e~-~l~~tvrkfa~~~i~Plv~~mD~~~~~~~--~v~k~~fe~Glmgv   85 (398)
T KOG0139|consen   11 RLIASRSSTLSASASSTPK--KPAPLQILSETEQ-MLQKTVRKFAQEEIKPLVREMDRESRYPA--SVIKGLFELGLMGV   85 (398)
T ss_pred             ccccccccchhhhhhcCCC--CCCchhhcCcHHH-HHHHHHHHHHHHhcchHHHhhhhhccCCH--HHHHHHhhcCccee
Confidence            3444455554444443332  2335567899999 99999999999999999999999999999  99999999999999


Q ss_pred             CCCcCCCCCCCCHHHHHHHHHHHHhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCC
Q 023057           83 TAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSD  162 (288)
Q Consensus        83 ~~pe~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d  162 (288)
                      .+||+|||.|.+....+.++||+++.|+++++.+.+|+.+...++..||+++||+.|+|.+ .|+.++++++|||+.|||
T Consensus        86 ~vpeeyGGsG~df~~~~~v~EEisk~d~sv~~~v~v~ntL~~~~i~~fGteeqK~~~~P~~-~~d~vgsfAlSEpgaGSD  164 (398)
T KOG0139|consen   86 EVPEEYGGSGLDFFAAAIVIEEISKVDASVGVIVDVQNTLYLPLIIQFGTEEQKEKYLPKL-TGDLVGSFALSEPGAGSD  164 (398)
T ss_pred             ecChhhCCCchhHHHHHHHHHHHhccCccceeEEEecccccchHHHHhCcHHHHhhhcchh-hccccceeeecCCCCCcc
Confidence            9999999999999999999999999999999999999889999999999999999888885 588899999999999999


Q ss_pred             CCCCeEEEEEeCCeEEEeeEeeeeeCCCCCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEE
Q 023057          163 VVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELV  242 (288)
Q Consensus       163 ~~~~~~~a~~~~~g~~l~G~k~~v~~~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~  242 (288)
                      ...+.|+|++++|.|+|||+|.|+||+..|++++|++.+++..+++++++|+||++.||+++..+.+++|+|++.++.++
T Consensus       165 a~A~~T~Ak~~Gd~~viNGsKmWItN~~~A~~~lVfan~d~~~~~Kgit~fiV~rd~~Gl~~~k~eDKLGmRaSsTcql~  244 (398)
T KOG0139|consen  165 AFALKTTAKKDGDDYVINGSKMWITNAGEADWFLVFANADPSKGYKGITCFIVPRDTPGLSLGKKEDKLGMRASSTCQLH  244 (398)
T ss_pred             hHHhhhhHhhcCCeEEEecceeeecCCcccceEEEEEecChhhccCceeEEEeeCCCCCcccCCccccccccccceeeEE
Confidence            99999999999999999999999999999999999999988888999999999999999999999999999999999999


Q ss_pred             eceeeeCCCCcccCCCccHHHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057          243 FENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       243 ~~~v~vp~~~~l~~~~~~~~~~~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      |+||+||++++||..+.|+++....++.+|+.++++++|.++.|+|
T Consensus       245 fedVrVpks~IlGe~G~GykyAm~~Ln~gRIgi~AqmlglaQ~c~d  290 (398)
T KOG0139|consen  245 FEDVRVPKSSILGEYGKGYKYAIEVLNAGRIGIGAQMLGLAQGCFD  290 (398)
T ss_pred             eccccccchhhcccCCcchHHHHHhcCccceeehhhhhhhhHhHHH
Confidence            9999999999999999999999999999999999999999999986

>KOG0141 consensus Isovaleryl-CoA dehydrogenase [Amino acid transport and metabolism; Lipid transport and metabolism]

Probab=100.00  E-value=2.5e-52  Score=350.06  Aligned_cols=277  Identities=66%  Similarity=1.020  Sum_probs=258.3

Q ss_pred             ccccccccccccccCCCCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCC
Q 023057           11 CASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGG   90 (288)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG   90 (288)
                      +++..+........-...+-+++|+. .|++++++|+++++.|.+.++|+.+.++...+.|+++.++|++++..|++|||
T Consensus        21 l~~~~~r~~s~~~~~d~~~g~~~e~~-~~r~sv~kF~qeelaP~a~eidk~n~~~~~r~~WkklG~~gllGita~~~~GG   99 (421)
T KOG0141|consen   21 LPAERTRTPSAYPVDDSMFGLSDEQD-QLRESVRKFFQEELAPHASEIDKANEFKDLREFWKKLGKQGLLGITAPEEYGG   99 (421)
T ss_pred             CchhhhhcccccccchhhcCCCHHHH-HHHHHHHHHHHHhhcchhhhhhhcCCcchHHHHHHHhhhcCcccccchhhhCC
Confidence            44444444444455555566899999 99999999999999999999999999987669999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEE
Q 023057           91 LGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA  170 (288)
Q Consensus        91 ~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a  170 (288)
                      .|.++.+.+.++||++|....+++.++.|++++..-|.+.|+++|+++|||.+.+|+-++++++|||++|||..++.+.|
T Consensus       100 ~G~~y~~h~ivmEE~sra~g~v~lsygaHSnlcinqlvrnGseeQkekylPkl~sGe~iGalAMsEp~AGSDvv~mK~~A  179 (421)
T KOG0141|consen  100 SGGGYLSHCIVMEEISRASGGVALSYGAHSNLCINQLVRNGSEEQKEKYLPKLISGEHIGALAMSEPGAGSDVVSMKLKA  179 (421)
T ss_pred             CchhHHHHHHHHHHHHhhcCCcccccccccchHHHHHHhcCCHHHHHhhhhhhhcccccceeeecCCCCCCccceeeeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCeEEEeeEeeeeeCCCCCCEEEEEEEeCCC--CCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeee
Q 023057          171 DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK--AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFV  248 (288)
Q Consensus       171 ~~~~~g~~l~G~k~~v~~~~~ad~~lv~a~~~~~--~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~v  248 (288)
                      ++.++.|+|||+|.|+||++.||.++|.|+++..  ++..++++|+|....||.+..+..+++|||+..++++.|+|++|
T Consensus       180 ek~g~~yiLNGsK~witNG~~advliVyAkTd~~a~~~~hGIt~FiVEkgm~GFs~~~KLdKlGmrgsdTcELvFed~~v  259 (421)
T KOG0141|consen  180 EKKGDDYILNGSKFWITNGPDADVLIVYAKTDHSAVPPSHGITAFIVEKGMPGFSTAQKLDKLGMRGSDTCELVFEDCKV  259 (421)
T ss_pred             eecCCcEEecCcEEEEecCCCCcEEEEEEecCCCCCCCcCceEEEEEcCCCcccccchhhHhhcCCCCcchheehhhccC
Confidence            9999999999999999999999999999999865  45678999999999999999899999999999999999999999


Q ss_pred             CCCCcccCCCccHHHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057          249 PNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       249 p~~~~l~~~~~~~~~~~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      |+.+++|.++.|+-++..-++..|+.+++-.+|++++++|
T Consensus       260 pas~ilg~enkGvYvlMsgLd~ERLvla~gplglmqa~~d  299 (421)
T KOG0141|consen  260 PASNILGEENKGVYVLMSGLDLERLVLAAGPLGLMQAALD  299 (421)
T ss_pred             cHHHhcCcCCceEEEEecCCChhHhhhccCchHHHHHHHH
Confidence            9999999999999888899999999999999999999875

>KOG0140 consensus Medium-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=100.00  E-value=1.3e-48  Score=327.54  Aligned_cols=257  Identities=36%  Similarity=0.606  Sum_probs=248.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHh
Q 023057           28 TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISR  107 (288)
Q Consensus        28 ~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~~  107 (288)
                      .+.|+++|. ++++.+++|.++.+.|...++|+.+.+|-  +++++..++||.+..+|+++||.|++..+.+.+.|+|+.
T Consensus        25 sf~L~e~qk-e~q~~A~kFa~~e~~P~aae~Dk~ge~P~--~iirkA~~lG~~~~~ip~~~GG~Gls~l~t~lI~E~Lay  101 (408)
T KOG0140|consen   25 SFGLTEDQK-EFQEAARKFAKDEMIPNAAEYDKSGEFPW--EIIRKAHELGFMNTYIPEDYGGLGLSRLDTCLIFEALAY  101 (408)
T ss_pred             ccCcchHHH-HHHHHHHHHHHHhhccchhhhcccCCCcH--HHHHHHHHcccCcccCccccCCCCchhHHHHHHHHHHHc
Confidence            589999999 99999999999999999999999999999  999999999999999999999999999999999999999


Q ss_pred             hCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeeeee
Q 023057          108 ASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCT  187 (288)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v~  187 (288)
                      +|.++...+..|+ ++++.+..+|+++||++||++++....+++.++|||+.|||..++.|+|++.+|.|+|||.|.|+|
T Consensus       102 GCtg~~~~I~~~~-l~~~pi~~~gneeqKkk~lg~l~~~p~~asYcvTEPgAGSDvagikTka~KkGDeYiiNGsKawIt  180 (408)
T KOG0140|consen  102 GCTGIQTAISIHN-LAAWPIILSGNEEQKKKYLGRLAEEPKVASYCVTEPGAGSDVAGIKTKAEKKGDEYIINGSKAWIT  180 (408)
T ss_pred             cchhHHHHHhccc-hhhhhehhcCcHHHHHhhhhhhhcchhhhhhhccCCCCCcchhhhhhhhhhcCCEEEEcCceeeee
Confidence            9999998888888 999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCCC---CCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHHH
Q 023057          188 NGPVAQTLVVYAKTDIK---AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVM  264 (288)
Q Consensus       188 ~~~~ad~~lv~a~~~~~---~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~~  264 (288)
                      |+.+|+|++|++|++++   ++.+.+.+|+|+.+.||++......++|.+..++-.|+|+||+||.+++||.++.|+.+.
T Consensus       181 g~G~anwyfVlaRtd~~pk~p~~Kaft~fiVe~dTpGlt~GkKE~nmGqr~sdTR~itFEDvrVP~~Nvlg~~G~GFkvA  260 (408)
T KOG0140|consen  181 GAGHANWYFVLARTDPDPKTPAGKAFTAFIVEGDTPGLTRGKKEKNMGQRCSDTRGITFEDVRVPKENVLGAPGAGFKVA  260 (408)
T ss_pred             cCCccceEEEEEecCCCCCCCCCcceEEEEEeCCCCCcCcChhhhcccccCCCCceeeeeecccchhccccCCCccceeh
Confidence            99999999999999875   446789999999999999999888999999999999999999999999999999999999


Q ss_pred             HHhhhHHHHHHHHHHHHHhhcccC
Q 023057          265 MSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       265 ~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      ...++-.|..+++.++|++++++|
T Consensus       261 m~~fd~tRp~vAa~alG~A~r~ld  284 (408)
T KOG0140|consen  261 MGGFDKTRPNVAAGALGLAQRCLD  284 (408)
T ss_pred             hhhccCCCCchhhhhhHHHHHHHH
Confidence            999999999999999999999975

>PLN02519 isovaleryl-CoA dehydrogenase

Probab=100.00  E-value=5.5e-46  Score=341.66  Aligned_cols=265  Identities=87%  Similarity=1.366  Sum_probs=241.9

Q ss_pred             ccCCCCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHH
Q 023057           23 AAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAM  102 (288)
Q Consensus        23 ~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~  102 (288)
                      +..+.++.+++++. ++++.+++|+++.+.+...+.|+.+.+|...++|++|++.||+++.+|+++||.|+++.+.+.++
T Consensus        18 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~~~l~~~G~~~~~vP~e~GG~g~~~~~~~~v~   96 (404)
T PLN02519         18 SSSSSSLLFDDTQL-QFKESVQQFAQENIAPHAAAIDATNSFPKDVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAM   96 (404)
T ss_pred             cccCCCCCCCHHHH-HHHHHHHHHHHHhCCcchHHHHhcCCCCchHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHH
Confidence            34456778999999 99999999999999998888888888887223799999999999999999999999999999999


Q ss_pred             HHHHhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeE
Q 023057          103 EEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGN  182 (288)
Q Consensus       103 e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~  182 (288)
                      |+++++++++++++.+|...+...+..+|+++|+++|||.+.+|+.++|+++|||..|+|...+.+++++++|||+|||+
T Consensus        97 e~la~~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~sEp~~gsd~~~~~t~a~~~~~g~~lnG~  176 (404)
T PLN02519         97 EEISRASGSVGLSYGAHSNLCINQLVRNGTPAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERVDGGYVLNGN  176 (404)
T ss_pred             HHHhhhcccHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCcCCCcccceEEEEEeCCEEEEEeE
Confidence            99999999999888888655566788899999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeeCCCCCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHH
Q 023057          183 KMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVY  262 (288)
Q Consensus       183 k~~v~~~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~  262 (288)
                      |+|++++..||+++|.+++++++++.++.+|+||++.|||++.++|+++|++++++++|.|+||+||++++++..+.|+.
T Consensus       177 K~~vs~a~~ad~~~v~a~~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~G~rgt~s~~v~f~~v~Vp~~~~lg~~~~G~~  256 (404)
T PLN02519        177 KMWCTNGPVAQTLVVYAKTDVAAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGQEGKGVY  256 (404)
T ss_pred             EEeecCCCcCCEEEEEEEeCCCCCCCeeEEEEEeCCCCCeeccCcccccCCCCCCeeEEEeCeEEecHHHcCCCCCccHH
Confidence            99999999999999999976544445788999999999999989999999999999999999999999999999888888


Q ss_pred             HHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057          263 VMMSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       263 ~~~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      .....++..|+.+++.++|+++++++
T Consensus       257 ~~~~~~~~~r~~~aa~~lG~a~~al~  282 (404)
T PLN02519        257 VMMSGLDLERLVLAAGPLGLMQACLD  282 (404)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77788899999999999999999874

>cd01151 GCD Glutaryl-CoA dehydrogenase

Probab=100.00  E-value=2.6e-45  Score=335.54  Aligned_cols=254  Identities=34%  Similarity=0.572  Sum_probs=233.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHH
Q 023057           27 STSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEIS  106 (288)
Q Consensus        27 ~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~  106 (288)
                      |++.++++|. ++++.+++|+++.+.+...+.++.+.+|.  ++|++|++.||+++ +|++|||.|+++.+...++|+++
T Consensus         9 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~-vP~~~GG~g~~~~~~~~v~e~l~   84 (386)
T cd01151           9 LDDLLTEEER-AIRDTAREFCQEELAPRVLEAYREEKFDR--KIIEEMGELGLLGA-TIKGYGCAGLSSVAYGLIAREVE   84 (386)
T ss_pred             cccCCCHHHH-HHHHHHHHHHHHhcCccHHHHHHhCCCCH--HHHHHHHHCCCCcc-CccccCCCCCCHHHHHHHHHHHH
Confidence            6678999999 99999999999999988877788888999  99999999999999 99999999999999999999999


Q ss_pred             hhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeeee
Q 023057          107 RASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWC  186 (288)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v  186 (288)
                      +.++++++.+.+|..++...+..+|+++|+++|++++++|+.++|+++|||+.|+|...+.++|++++|||+|||+|.|+
T Consensus        85 ~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~i  164 (386)
T cd01151          85 RVDSGYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASGELIGCFGLTEPNHGSDPGGMETRARKDGGGYKLNGSKTWI  164 (386)
T ss_pred             hhChhHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeEEEEEECCEEEEEEEEEee
Confidence            99999887777765456667889999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHHHHH
Q 023057          187 TNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMS  266 (288)
Q Consensus       187 ~~~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~~~~  266 (288)
                      |++..||+++|.++++++   .++.+|+||++.||+++.+.|+++|++++++++|+|+||+||++++++. +.++.....
T Consensus       165 s~~~~Ad~~lv~ar~~~~---~~~~~flVp~~~~gv~i~~~~~~~G~~g~~s~~v~f~~v~Vp~~~~l~~-~~g~~~~~~  240 (386)
T cd01151         165 TNSPIADVFVVWARNDET---GKIRGFILERGMKGLSAPKIQGKFSLRASITGEIVMDNVFVPEENLLPG-AEGLRGPFK  240 (386)
T ss_pred             cCCCcCCEEEEEEEECCC---CcEEEEEEcCCCCCeecCCCCCCcCCCCCceeEEEEccEEeCHHHcCCc-cccHHHHHH
Confidence            999999999999997642   3578999999999999989999999999999999999999999999986 467777778


Q ss_pred             hhhHHHHHHHHHHHHHhhcccC
Q 023057          267 GLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       267 ~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      .++..|+.+++.++|+++++++
T Consensus       241 ~~~~~r~~~aa~~lG~a~~al~  262 (386)
T cd01151         241 CLNNARYGIAWGALGAAEDCYH  262 (386)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            8889999999999999999874

Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.

>cd01156 IVD Isovaleryl-CoA dehydrogenase

Probab=100.00  E-value=1.6e-45  Score=335.77  Aligned_cols=255  Identities=71%  Similarity=1.148  Sum_probs=236.7

Q ss_pred             CCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhCC
Q 023057           31 LFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASG  110 (288)
Q Consensus        31 ~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~~~~~  110 (288)
                      ++++++ ++++.+++|+++.+.+.+.+.|+.+.+|.  +.|+.|++.||+++.+|++|||.|+++.+.+.++++++++|+
T Consensus         2 ~~~~~~-~l~~~~~~~~~~~~~~~a~~~d~~~~~~~--~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~   78 (376)
T cd01156           2 LDDEIE-MLRQSVREFAQKEIAPLAAKIDRDNEFPR--DLWRKMGKLGLLGITAPEEYGGSGMGYLAHVIIMEEISRASG   78 (376)
T ss_pred             CCHHHH-HHHHHHHHHHHHhcCcchHHHHhhCCCCH--HHHHHHHhCCCCcccCCHhhCCCCCCHHHHHHHHHHHhccch
Confidence            578888 99999999999999988878888888999  999999999999999999999999999999999999999999


Q ss_pred             chhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeeeeeCCC
Q 023057          111 SVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGP  190 (288)
Q Consensus       111 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v~~~~  190 (288)
                      ++++.+..|...+...|..+|+++|+++|++++++|++++++++|||.+|+|...+.+++++++|||+|||+|.|++|+.
T Consensus        79 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~sEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~  158 (376)
T cd01156          79 SVALSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKKGDRYVLNGSKMWITNGP  158 (376)
T ss_pred             hHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhCeEEEEEeCCEEEEEEEEEEecCCC
Confidence            99988777765556678899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHHHHHhhhH
Q 023057          191 VAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDL  270 (288)
Q Consensus       191 ~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~~~~~~~~  270 (288)
                      .||+++|.++++++.++.++.+|+||++.|||++.+.|+++|++++++++|.|+||+||++++++..+.++......++.
T Consensus       159 ~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~  238 (376)
T cd01156         159 DADTLVVYAKTDPSAGAHGITAFIVEKGMPGFSRAQKLDKLGMRGSNTCELVFEDCEVPEENILGGENKGVYVLMSGLDY  238 (376)
T ss_pred             cCCEEEEEEEeCCCCCCCceEEEEEcCCCCCeecCCccccccCCCCCceEEEeCceEecHHHcCCCCCchHHHHHHHHhh
Confidence            99999999997654444568899999999999998889999999999999999999999999999988898888888999


Q ss_pred             HHHHHHHHHHHHhhcccC
Q 023057          271 ERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       271 ~r~~~aa~~~G~a~~al~  288 (288)
                      .|+.+++.++|+++++++
T Consensus       239 ~r~~~aa~~lG~a~~al~  256 (376)
T cd01156         239 ERLVLAGGPIGIMQAALD  256 (376)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999999875

Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.

>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated

Probab=100.00  E-value=6.5e-45  Score=332.15  Aligned_cols=256  Identities=24%  Similarity=0.425  Sum_probs=229.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHhhc-CcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHH
Q 023057           27 STSLLFDDTQLQFKESVGQFARENI-APRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEI  105 (288)
Q Consensus        27 ~~~~~s~~~~~~l~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l  105 (288)
                      |++.+|++|. ++++.+|+|+++++ .+...+.|+.+.+|.  +.|++|++.||+++.+|++|||.|+++.+++.+++++
T Consensus         1 m~~~~~~~~~-~~~~~~r~~~~~~~~~~~~~~~d~~~~~p~--~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~l   77 (380)
T PRK03354          1 MDFNLNDEQE-LFVAGIRELMASENWEAYFAECDRDSVYPE--RFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMEL   77 (380)
T ss_pred             CCCCCCHHHH-HHHHHHHHHHHhccCChhHHHHHhhCCCCH--HHHHHHHHCCCCccCCChhhCCCCCCHHHHHHHHHHH
Confidence            4567999999 99999999999876 455567888888999  9999999999999999999999999999999999999


Q ss_pred             HhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeee
Q 023057          106 SRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMW  185 (288)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~  185 (288)
                      +++|+++++.+.++.  ....+..+++++|+++||+++++|+.+.++++|||+.|+|...+.|++++++|||+|||+|.|
T Consensus        78 a~~~~s~~~~~~~~~--~~~~l~~~g~~e~~~~~l~~~~~g~~~~~~a~tE~~~gs~~~~~~t~a~~~~~g~~lnG~K~f  155 (380)
T PRK03354         78 GRLGAPTYVLYQLPG--GFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKVYLNGSKCF  155 (380)
T ss_pred             HhcCcchHHHHHhcc--cHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCEEEEEEeCCEEEEeeEEEE
Confidence            999999876655543  245678899999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHHHH
Q 023057          186 CTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMM  265 (288)
Q Consensus       186 v~~~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~~~  265 (288)
                      +|++..||+++|.++++.+++...+.+|+||++.+|+++ .+|+++|++++++++|.|+||+||.+++++.+++|+....
T Consensus       156 is~~~~ad~~~v~a~~~~~~~~~~~~~~lv~~~~~gv~~-~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~g~g~~~~~  234 (380)
T PRK03354        156 ITSSAYTPYIVVMARDGASPDKPVYTEWFVDMSKPGIKV-TKLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVK  234 (380)
T ss_pred             EcCCCcCCEEEEEEEcCCCCCCCceeEEEEECCCCceEe-ccccccCCCCCCeEEEEEccEEecHHHcCCCCChHHHHHH
Confidence            999999999999999754333345778999999999998 4799999999999999999999999999999888887777


Q ss_pred             HhhhHHHHHHHHHHHHHhhcccC
Q 023057          266 SGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       266 ~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      ..++..|+.+++.++|++++++|
T Consensus       235 ~~~~~~r~~~aa~~~G~a~~al~  257 (380)
T PRK03354        235 EEFDHERFLVALTNYGTAMCAFE  257 (380)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            77888999999999999999874

>cd01162 IBD Isobutyryl-CoA dehydrogenase

Probab=100.00  E-value=1.2e-44  Score=330.01  Aligned_cols=253  Identities=32%  Similarity=0.570  Sum_probs=234.9

Q ss_pred             CCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhCC
Q 023057           31 LFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASG  110 (288)
Q Consensus        31 ~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~~~~~  110 (288)
                      +++++. ++++.+++|+++++.+...++|+.+.+|.  ++|+.|++.||+++.+|++|||.|.++.+.+.++++++++++
T Consensus         1 ~~~~~~-~l~~~~~~~~~~~~~~~a~~~d~~~~~p~--~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~l~~~~~   77 (375)
T cd01162           1 LNEEQR-AIQEVARAFAAKEMAPHAADWDQKKHFPV--DVLRKAAELGFGGIYIRDDVGGSGLSRLDASIIFEALSTGCV   77 (375)
T ss_pred             CCHHHH-HHHHHHHHHHHHhCCcchhhHHhhCCCCH--HHHHHHHHCCCCCcCCCHhhCCCCCCHHHHHHHHHHHHhhch
Confidence            478888 99999999999999998888888899999  999999999999999999999999999999999999999999


Q ss_pred             chhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeeeeeCCC
Q 023057          111 SVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGP  190 (288)
Q Consensus       111 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v~~~~  190 (288)
                      ++++.+.+|. .+..++..+|+++|+++|++++.+|+.++++++|||++|+|...+.++++++++||+|||+|+|++++.
T Consensus        78 ~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~  156 (375)
T cd01162          78 STAAYISIHN-MCAWMIDSFGNDEQRERFLPDLCTMEKLASYCLTEPGSGSDAAALRTRAVREGDHYVLNGSKAFISGAG  156 (375)
T ss_pred             hHHHHHHHhh-hHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCCCCChhhCEEEEEEeCCEEEEEEEEEEecCCC
Confidence            9987777776 566778889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHHHHHhhhH
Q 023057          191 VAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDL  270 (288)
Q Consensus       191 ~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~~~~~~~~  270 (288)
                      .||+++|.++.+++ +..++.+|+||++.|||++.+.|+++|++++++++|+|+||+||.+++++..+.++......+..
T Consensus       157 ~ad~~~v~a~~~~~-~~~~~~~~lv~~~~~gv~v~~~~~~~g~~~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~  235 (375)
T cd01162         157 DSDVYVVMARTGGE-GPKGISCFVVEKGTPGLSFGANEKKMGWNAQPTRAVIFEDCRVPVENRLGGEGQGFGIAMAGLNG  235 (375)
T ss_pred             CCCEEEEEEEecCC-CCCceEEEEEeCCCCCeecCCcccccCCCCCCeeEEEECceEecHHHcCCCCCchHHHHHHHHHH
Confidence            99999999997543 33467899999999999999999999999999999999999999999999988888888888899


Q ss_pred             HHHHHHHHHHHHhhcccC
Q 023057          271 ERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       271 ~r~~~aa~~~G~a~~al~  288 (288)
                      .|+..++.++|+++++++
T Consensus       236 ~r~~~aa~~lG~a~~al~  253 (375)
T cd01162         236 GRLNIASCSLGAAQAALD  253 (375)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999999874

Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.

>cd01157 MCAD Medium chain acyl-CoA dehydrogenase

Probab=100.00  E-value=1.6e-44  Score=329.52  Aligned_cols=254  Identities=38%  Similarity=0.588  Sum_probs=231.0

Q ss_pred             CCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhCC
Q 023057           31 LFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASG  110 (288)
Q Consensus        31 ~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~~~~~  110 (288)
                      +++++. ++++.+++|+++.+.+...++|+.+.+|.  +.|++|++.||+++.+|++|||.|+++.+++.++|++++.|+
T Consensus         1 ~~~~~~-~l~~~~~~~~~~~~~~~~~~~d~~~~~p~--~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~v~e~l~~~~~   77 (378)
T cd01157           1 LTEQQK-EFQETARKFAREEIIPVAAEYDKSGEYPW--PLIKRAWELGLMNTHIPEDCGGLGLGTFDTCLITEELAYGCT   77 (378)
T ss_pred             CCHHHH-HHHHHHHHHHHHhcccchHHHHhhCCCCH--HHHHHHHhCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhhhh
Confidence            468888 99999999999999988888888888999  999999999999999999999999999999999999999999


Q ss_pred             chhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeeeeeCCC
Q 023057          111 SVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGP  190 (288)
Q Consensus       111 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v~~~~  190 (288)
                      ++++.+..+. ++...+..+|+++|+++||+.+.+|+.+.++++|||..|+|...+.+++++++|||+|||+|.|+|++.
T Consensus        78 ~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~  156 (378)
T cd01157          78 GVQTAIEANS-LGQMPVIISGNDEQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGG  156 (378)
T ss_pred             HHHHHHHhhh-hhHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhcCeEEEEEcCCEEEEeeEEEeecCCc
Confidence            8877665543 444556678999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEEeCCCCC---CCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHHHHHh
Q 023057          191 VAQTLVVYAKTDIKAG---SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSG  267 (288)
Q Consensus       191 ~ad~~lv~a~~~~~~~---~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~~~~~  267 (288)
                      .||+++|.++++++.+   ..++.+|+||++.||+++.+.|+++|++++++++++|+||+||.+++++.++.++......
T Consensus       157 ~ad~~lv~a~~~~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~s~~~~~~~v~Vp~~~~lg~~~~g~~~~~~~  236 (378)
T cd01157         157 KANWYFLLARSDPDPKCPASKAFTGFIVEADTPGIQPGRKELNMGQRCSDTRGITFEDVRVPKENVLIGEGAGFKIAMGA  236 (378)
T ss_pred             cCCEEEEEEEeCCcccCCCCCceEEEEEcCCCCCeeccCcccccCCCCCCceEEEeccEEECHHHcCCCCCchHHHHHHH
Confidence            9999999999754321   2467899999999999998889999999999999999999999999999888888888888


Q ss_pred             hhHHHHHHHHHHHHHhhcccC
Q 023057          268 LDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       268 ~~~~r~~~aa~~~G~a~~al~  288 (288)
                      ++..|+.+++.++|+++++++
T Consensus       237 ~~~~r~~~aa~~lG~a~~~l~  257 (378)
T cd01157         237 FDKTRPPVAAGAVGLAQRALD  257 (378)
T ss_pred             HhhhHHHHHHHHHHHHHHHHH
Confidence            889999999999999999874

MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.

>cd01160 LCAD Long chain acyl-CoA dehydrogenase

Probab=100.00  E-value=1.8e-44  Score=328.53  Aligned_cols=252  Identities=38%  Similarity=0.747  Sum_probs=230.1

Q ss_pred             HHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhCCch
Q 023057           33 DDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSV  112 (288)
Q Consensus        33 ~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~~~~~~~  112 (288)
                      ++|. ++++.+++|+++.+.+...++|+++.+|+  +.|++|++.||+++.+|++|||.|+++.+.+.++|++++.+.+ 
T Consensus         1 ~~~~-~l~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~~-   76 (372)
T cd01160           1 EEHD-AFRDVVRRFFAKEVAPFHHEWEKAGEVPR--EVWRKAGEQGLLGVGFPEEYGGIGGDLLSAAVLWEELARAGGS-   76 (372)
T ss_pred             ChHH-HHHHHHHHHHHHhCchhHHHHHhhCCCCH--HHHHHHHhCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHhcch-
Confidence            3677 99999999999999888888888888999  9999999999999999999999999999999999999997655 


Q ss_pred             hhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeeeeeCCCCC
Q 023057          113 GLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVA  192 (288)
Q Consensus       113 ~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a  192 (288)
                      ++.+.+|...+...+..+++++|+++||+++.+|+.++|+++|||..|+|...+.++++++++||+|||+|.|+||+..|
T Consensus        77 ~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~A  156 (372)
T cd01160          77 GPGLSLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMTEPGAGSDLQGIRTTARKDGDHYVLNGSKTFITNGMLA  156 (372)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCeEEEEEeCCEEEEeeEEEEecCCCcc
Confidence            55666665456677889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEEeCCCC-CCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHHHHHhhhHH
Q 023057          193 QTLVVYAKTDIKA-GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLE  271 (288)
Q Consensus       193 d~~lv~a~~~~~~-~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~~~~~~~~~  271 (288)
                      |+++|.++++++. ++.++.+|+||++.||+++.++|+++|++++++++|+|+||+||++++|+.++.++......++..
T Consensus       157 d~~~v~a~~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~  236 (372)
T cd01160         157 DVVIVVARTGGEARGAGGISLFLVERGTPGFSRGRKLKKMGWKAQDTAELFFDDCRVPAENLLGEENKGFYYLMQNLPQE  236 (372)
T ss_pred             CEEEEEEEeCCCCCCCCceEEEEEeCCCCCeecCCccccccCCCCCeEEEEecceEccHHHcCCCCCchHHHHHHHHHHH
Confidence            9999999976532 245788999999999999988899999999999999999999999999999888888888889999


Q ss_pred             HHHHHHHHHHHhhcccC
Q 023057          272 RLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       272 r~~~aa~~~G~a~~al~  288 (288)
                      |+..++.++|+++++++
T Consensus       237 ~~~~aa~~lG~a~~al~  253 (372)
T cd01160         237 RLLIAAGALAAAEFMLE  253 (372)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999999874

LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.

>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional

Probab=100.00  E-value=2.3e-44  Score=331.54  Aligned_cols=256  Identities=42%  Similarity=0.732  Sum_probs=235.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHH
Q 023057           25 FSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEE  104 (288)
Q Consensus        25 ~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~  104 (288)
                      ++..+.+++++. ++++.+++|+++.+.+...+.|+.+.+|+  +.|++|++.||+++.+|++|||.|+++.+.+.++|+
T Consensus        31 ~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~a~~~d~~~~~~~--~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~  107 (410)
T PTZ00461         31 FMDLYNPTPEHA-ALRETVAKFSREVVDKHAREDDINMHFNR--DLFKQLGDLGVMGVTVPEADGGAGMDAVAAVIIHHE  107 (410)
T ss_pred             ccccCCCCHHHH-HHHHHHHHHHHHhCCccHHHHhhhCCCCH--HHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHH
Confidence            444568999999 99999999999999998888888889999  999999999999999999999999999999999999


Q ss_pred             HHhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCC-eEEEeeEe
Q 023057          105 ISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDG-GYIINGNK  183 (288)
Q Consensus       105 l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~-g~~l~G~k  183 (288)
                      +++.++++++.+..|...+...+..+++++|+++||+++.+|+.++++++|||++|+|...+.+++++++| ||+|||+|
T Consensus       108 la~~~~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~gg~~L~G~K  187 (410)
T PTZ00461        108 LSKYDPGFCLAYLAHSMLFVNNFYYSASPAQRARWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDSNGNYVLNGSK  187 (410)
T ss_pred             HHhhCchHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChHHCeEEEEEcCCCeEEEEeEE
Confidence            99999988777777754455667789999999999999999999999999999999999999999998865 69999999


Q ss_pred             eeeeCCCCCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHH
Q 023057          184 MWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYV  263 (288)
Q Consensus       184 ~~v~~~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~  263 (288)
                      .|+||+..||+++|.+++++     ++.+|+||++.|||++.+.|+++|++++++++++|+||+||++++|+.++.++..
T Consensus       188 ~~vs~a~~Ad~~lv~a~~~~-----~~~~flVp~~~~Gv~v~~~~~~~G~r~~~~~~l~f~~v~Vp~~~~lg~~g~g~~~  262 (410)
T PTZ00461        188 IWITNGTVADVFLIYAKVDG-----KITAFVVERGTKGFTQGPKIDKCGMRASHMCQLFFEDVVVPAENLLGEEGKGMVG  262 (410)
T ss_pred             EeECCCccCCEEEEEEEeCC-----ceEEEEEeCCCCCeecCCCCcccCCCCCceEEEEEcceecCHHHhCCCCCccHHH
Confidence            99999999999999998652     4789999999999999999999999999999999999999999999998889888


Q ss_pred             HHHhhhHHHHHHHHHHHHHhhcccC
Q 023057          264 MMSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       264 ~~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      ....++..|+..++.++|+++++++
T Consensus       263 ~~~~~~~~r~~~aa~~~G~a~~al~  287 (410)
T PTZ00461        263 MMRNLELERVTLAAMAVGIAERSVE  287 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888999999999999999999874

>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase

Probab=100.00  E-value=2.2e-44  Score=327.92  Aligned_cols=253  Identities=32%  Similarity=0.556  Sum_probs=231.0

Q ss_pred             CCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhCC
Q 023057           31 LFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASG  110 (288)
Q Consensus        31 ~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~~~~~  110 (288)
                      +++++. ++++.+++|+++.+.|...+.|+.+.+|.  ++|++|++.||+++.+|++|||.|+++.+.+.++|++++.++
T Consensus         1 ~t~~~~-~l~~~~~~~~~~~~~p~~~~~d~~~~~~~--~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~   77 (372)
T TIGR03207         1 LNEDLQ-ALADTARRFARERIAPGFKERDKTRVLDR--ELMRDMGEMGFIGPELPEEHGGLGMGCLAAGVIHEQIARADL   77 (372)
T ss_pred             CCHHHH-HHHHHHHHHHHHhcCcchHHHHhhCCCCH--HHHHHHHHCCCCcccCChhHCCCCCCHHHHHHHHHHHHhhCc
Confidence            467888 99999999999999998888888888999  999999999999999999999999999999999999999999


Q ss_pred             chhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeeeeeCCC
Q 023057          111 SVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGP  190 (288)
Q Consensus       111 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v~~~~  190 (288)
                      ++++....+. ++...+..+|+++|+++||+++++|+.++++++|||++|+|...+.+++++++|||+|||+|.|+||+.
T Consensus        78 s~~~~~~~~~-~~~~~l~~~g~~~~~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~lnG~k~~vs~~~  156 (372)
T TIGR03207        78 SMSYVNLLAS-LNGQILAQHARPEIAKPWLGQLIAGEALFAIALTEPRGGSDAARLRLRAERDGDDYVLNGEKTSISAAD  156 (372)
T ss_pred             cHHHHHHhhh-HHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCcChhhCEEEEEEeCCEEEEEEEEEEEcCCC
Confidence            9887544443 555678889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEEeCCC-CCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHHHHHhhh
Q 023057          191 VAQTLVVYAKTDIK-AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLD  269 (288)
Q Consensus       191 ~ad~~lv~a~~~~~-~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~~~~~~~  269 (288)
                      .||+++|+++++++ .+..++.+|+||++.|||++ ..|+++|++++++++|+|+||+||++++++..+.++......++
T Consensus       157 ~ad~~lv~a~~~~~~~~~~~~~~~lVp~~~~gv~~-~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~l~  235 (372)
T TIGR03207       157 QADAAVVFARTGSEAEGARGISAFLVPMDLPGITR-NRFDCHGQRAIGRGSIFFENVRVPADHMLGNEGQGFVQVMQGFD  235 (372)
T ss_pred             cCCEEEEEEEcCCCCCCCCceEEEEEcCCCCCeec-CcchhccCCCCCeeEEEECceeccHHHcCCCCChhHHHHHHHHH
Confidence            99999999997542 22346789999999999997 57999999999999999999999999999998888888888899


Q ss_pred             HHHHHHHHHHHHHhhcccC
Q 023057          270 LERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       270 ~~r~~~aa~~~G~a~~al~  288 (288)
                      ..|+.+++.++|+++++|+
T Consensus       236 ~~r~~~a~~~~G~a~~al~  254 (372)
T TIGR03207       236 FSRALIGLQVLAVARAALD  254 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999875

Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.

>PRK12341 putative acyl-CoA dehydrogenase; Provisional

Probab=100.00  E-value=3.6e-44  Score=327.43  Aligned_cols=255  Identities=24%  Similarity=0.436  Sum_probs=228.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHhhcC-cccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHH
Q 023057           27 STSLLFDDTQLQFKESVGQFARENIA-PRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEI  105 (288)
Q Consensus        27 ~~~~~s~~~~~~l~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l  105 (288)
                      |++.+++++. ++++.++.|+++.+. +...++|+.+.+|.  ++|++|++.||+++.+|++|||.|.++.+.+.++|++
T Consensus         1 m~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~--~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~l   77 (381)
T PRK12341          1 MDFSLTEEQE-LLLASIRELITRNFPEEYFRTCDENGTYPR--EFMRALADNGISMLGVPEEFGGTPADYVTQMLVLEEV   77 (381)
T ss_pred             CCCCCCHHHH-HHHHHHHHHHHHhcCchhHHHHHHhCCCCH--HHHHHHHHCCCCCcCCChhhCCCCcCHHHHHHHHHHH
Confidence            5677999999 999999999999886 45667788889999  9999999999999999999999999999999999999


Q ss_pred             HhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhH-hcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEee
Q 023057          106 SRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKL-ISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKM  184 (288)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~-~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~  184 (288)
                      ++.|.+. +.+ .+. .+...+..+|+++|+++|++++ .+|+.+.++++|||+.|||...+.+++++++|||+|||+|+
T Consensus        78 a~~~~~~-~~~-~~~-~~~~~l~~~g~~~q~~~~l~~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~~gg~~lnG~K~  154 (381)
T PRK12341         78 SKCGAPA-FLI-TNG-QCIHSMRRFGSAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYLNGQKT  154 (381)
T ss_pred             hhcChhH-HHH-hhh-hhHHHHHHhCCHHHHHHHhHHHhhCCCeEEEEEecCCCCCCchhhCeeEEEEeCCEEEEEeEEE
Confidence            9999873 333 222 3445677899999999999998 49998899999999999999999999999999999999999


Q ss_pred             eeeCCCCCCEEEEEEEeCCCCC-CCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHH
Q 023057          185 WCTNGPVAQTLVVYAKTDIKAG-SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYV  263 (288)
Q Consensus       185 ~v~~~~~ad~~lv~a~~~~~~~-~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~  263 (288)
                      |+||+..||+++|.++++++.+ ...+++|+||++.|||++ .+|+++|+++++++.|+|+||+||+++++|.++.++..
T Consensus       155 ~is~~~~Ad~~~v~a~~~~~~~~~~~~~~~lV~~~~~gv~~-~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~  233 (381)
T PRK12341        155 FITGAKEYPYMLVLARDPQPKDPKKAFTLWWVDSSKPGIKI-NPLHKIGWHMLSTCEVYLDNVEVEESDLVGEEGMGFLN  233 (381)
T ss_pred             EEcCCccCCEEEEEEEcCCCCCCCCceEEEEEeCCCCceee-cccccccCCCCCceEEEECcEEecHHHcCCCCChHHHH
Confidence            9999999999999999764322 346789999999999999 57999999999999999999999999999998888887


Q ss_pred             HHHhhhHHHHHHHHHHHHHhhcccC
Q 023057          264 MMSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       264 ~~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      ....++..|+.+++.++|++++++|
T Consensus       234 ~~~~~~~~r~~~aa~~lG~a~~al~  258 (381)
T PRK12341        234 VMYNFEMERLINAARSLGFAECAFE  258 (381)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            7778889999999999999999875

>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases

Probab=100.00  E-value=6.2e-44  Score=324.99  Aligned_cols=252  Identities=45%  Similarity=0.774  Sum_probs=233.8

Q ss_pred             HHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhCCchh
Q 023057           34 DTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVG  113 (288)
Q Consensus        34 ~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~~~~~~~~  113 (288)
                      ++. ++++.+++|+.+.+.+.+.+.|+.+.+|.  +.|++|++.||+++.+|+++||.|.++.+.+.++++++++|++++
T Consensus         2 ~~~-~~~~~~~~~~~~~~~~~a~~~d~~~~~~~--~~~~~l~~~Gl~~l~vP~e~GG~g~~~~~~~~v~~~l~~~~~s~~   78 (373)
T cd01158           2 EHQ-MIRKTVRDFAEKEIAPLAAEMDEKGEFPR--EVIKEMAELGLMGIPIPEEYGGAGLDFLAYAIAIEELAKVDASVA   78 (373)
T ss_pred             hHH-HHHHHHHHHHHHhcccchHHHhhcCCCCH--HHHHHHHhCCCCcccCCHHHCCCCCCHHHHHHHHHHHHhhCccHH
Confidence            577 99999999999989888878888888999  999999999999999999999999999999999999999999999


Q ss_pred             hHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeeeeeCCCCCC
Q 023057          114 LSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQ  193 (288)
Q Consensus       114 ~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v~~~~~ad  193 (288)
                      +.+.+|...+...+..+++++|+++|++++.+|+.++++++|||.+|++...+.+++++++|||+|||+|.|++|+..||
T Consensus        79 ~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~G~~~~~~a~se~~~gs~~~~~~~~a~~~~~g~~l~G~k~~vsg~~~ad  158 (373)
T cd01158          79 VIVSVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFALSEPGAGSDAAALKTTAKKDGDDYVLNGSKMWITNGGEAD  158 (373)
T ss_pred             HHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCHHHCEeEEEEeCCEEEEeeEEEEEcCCCcCC
Confidence            98888875566788899999999999999999999999999999999998889999999999999999999999999999


Q ss_pred             EEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHHHHHhhhHHHH
Q 023057          194 TLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERL  273 (288)
Q Consensus       194 ~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~~~~~~~~~r~  273 (288)
                      +++|.++.+.+++..++.+|+||.+.|||++.+.|+++|++++++++|+|+||+||++++++.++.++......++..|+
T Consensus       159 ~~lv~a~~~~~~~~~~~~~~lvp~~~~gv~i~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~  238 (373)
T cd01158         159 FYIVFAVTDPSKGYRGITAFIVERDTPGLSVGKKEDKLGIRGSSTTELIFEDVRVPKENILGEEGEGFKIAMQTLDGGRI  238 (373)
T ss_pred             EEEEEEEcCCCCCCCceEEEEEcCCCCCeecCCcccccccCCCCceEEEeCcEEecHHHcCCCCCchHHHHHHHHHHHHH
Confidence            99999987554344568899999999999999999999999999999999999999999999988888888888999999


Q ss_pred             HHHHHHHHHhhcccC
Q 023057          274 VLAAGPLGIMQAPVR  288 (288)
Q Consensus       274 ~~aa~~~G~a~~al~  288 (288)
                      ..++.++|+++++++
T Consensus       239 ~~~a~~lG~a~~~l~  253 (373)
T cd01158         239 GIAAQALGIAQAALD  253 (373)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999874

Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.

>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase

Probab=100.00  E-value=1.4e-43  Score=326.38  Aligned_cols=256  Identities=34%  Similarity=0.581  Sum_probs=230.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHH
Q 023057           27 STSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEIS  106 (288)
Q Consensus        27 ~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~  106 (288)
                      |++.+++++. ++++.+++|+++.+.+.  ++++.+.+|.  ++|++|++.||+++.+|+++||.|+++.++..++|+++
T Consensus        23 ~~~~~~~~~~-~l~~~~~~~~~~~~~~~--~~d~~~~~~~--~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~v~e~l~   97 (409)
T cd01161          23 LTEEQTEELN-MLVGPVEKFFEEVNDPA--KNDQLEKIPR--KTLTQLKELGLFGLQVPEEYGGLGLNNTQYARLAEIVG   97 (409)
T ss_pred             cCccCCHHHH-HHHHHHHHHHHHhCCch--hhccccCCCH--HHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHh
Confidence            4466788998 99999999999998875  3566778999  99999999999999999999999999999999999999


Q ss_pred             hhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEe--CCeEEEeeEee
Q 023057          107 RASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIINGNKM  184 (288)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~--~~g~~l~G~k~  184 (288)
                      + ++++++.+.+|...+...+..+|+++|+++|++.+++|+.++++++|||+.|+|...+.++++++  ++||+|||+|.
T Consensus        98 ~-~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gs~~~~~~t~a~~~~~g~g~~l~G~K~  176 (409)
T cd01161          98 M-DLGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASGEWIAAFALTEPSSGSDAASIRTTAVLSEDGKHYVLNGSKI  176 (409)
T ss_pred             h-ChHHHHHHHHhhhhhHHHHHHcCCHHHHHHHhHHHhCCCeeEEEEecCCCCCCChhhCeeEEEEcCCCCEEEEEeEEE
Confidence            9 99988887777645555677899999999999999999999999999999999999999999984  45799999999


Q ss_pred             eeeCCCCCCEEEEEEEeCC--CCC--CCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCcc
Q 023057          185 WCTNGPVAQTLVVYAKTDI--KAG--SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG  260 (288)
Q Consensus       185 ~v~~~~~ad~~lv~a~~~~--~~~--~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~  260 (288)
                      |+||+..||+++|.++++.  .++  +.++.+|+||++.|||++.+.|+++|++++++++|+|+||+||++++++..+.+
T Consensus       177 ~vs~~~~Ad~~lv~ar~~~~~~~g~~~~~~~~flvp~~~~gv~~~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~g~g  256 (409)
T cd01161         177 WITNGGIADIFTVFAKTEVKDATGSVKDKITAFIVERSFGGVTNGPPEKKMGIKGSNTAEVYFEDVKIPVENVLGEVGDG  256 (409)
T ss_pred             eecCCCcCCEEEEEEEcCCCCCCCCCCCceEEEEEeCCCCCcccCCcccccCCCCCCceEEEeccEEECHHHcCCCCChH
Confidence            9999999999999998752  112  246789999999999999899999999999999999999999999999998888


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057          261 VYVMMSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       261 ~~~~~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      +......++..|+.+++.++|++++++|
T Consensus       257 ~~~~~~~l~~~r~~~aa~~lG~a~~al~  284 (409)
T cd01161         257 FKVAMNILNNGRFGMGAALIGTMKRCIE  284 (409)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            8888889999999999999999999874

VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.

>PLN02526 acyl-coenzyme A oxidase

Probab=100.00  E-value=4.3e-43  Score=323.08  Aligned_cols=255  Identities=30%  Similarity=0.504  Sum_probs=230.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHH
Q 023057           26 SSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEI  105 (288)
Q Consensus        26 ~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l  105 (288)
                      +|+..+++++. ++.+.+++|+++++.+...+.++...+|.  ++|++|++.||+++.+ ++|||.|+++.+++.++|++
T Consensus        24 ~~~~~~t~~~~-~l~~~~~~f~~~~~~~~~~~~~~~~~~p~--~~~~~l~~~G~~~~~v-~~~GG~G~~~~~~~~~~e~l   99 (412)
T PLN02526         24 QFDDLLTPEEQ-ALRKRVRECMEKEVAPIMTEYWEKAEFPF--HIIPKLGSLGIAGGTI-KGYGCPGLSITASAIATAEV   99 (412)
T ss_pred             ccccCCCHHHH-HHHHHHHHHHHHhcccchHHHHHhCCCCH--HHHHHHHHCCCCcCcc-cccCCCCcCHHHHHHHHHHH
Confidence            36667899999 99999999999999887766666778998  9999999999999999 99999999999999999999


Q ss_pred             HhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeee
Q 023057          106 SRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMW  185 (288)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~  185 (288)
                      ++.|++++..+..|...+...+..+|+++|+++|++++++|+.+++++++||+.|+|...+.+++++++|||+|||+|.|
T Consensus       100 a~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~gg~~lnG~K~~  179 (412)
T PLN02526        100 ARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSLNTTATKVEGGWILNGQKRW  179 (412)
T ss_pred             HhhCchHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeEEEEECCEEEEEEEEee
Confidence            99999887666666545666788999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHHHH
Q 023057          186 CTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMM  265 (288)
Q Consensus       186 v~~~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~~~  265 (288)
                      ++|+..||+++|.++++++   .++.+|+||++.|||++.+.|+++|++++++++|+|+||+||++++++..+ ++....
T Consensus       180 vs~~~~Ad~~lv~a~~~~~---~~~~~flV~~~~~Gv~~~~~~~~~G~r~t~s~~v~f~~v~Vp~~~~l~~~~-~~~~~~  255 (412)
T PLN02526        180 IGNSTFADVLVIFARNTTT---NQINGFIVKKGAPGLKATKIENKIGLRMVQNGDIVLKDVFVPDEDRLPGVN-SFQDTN  255 (412)
T ss_pred             ecCCCccCEEEEEEEeCCC---CCeEEEEEcCCCCCeEcCCCCCccCcCCCCeeEEEEeeEEECHHHhCCCcc-cHHHHH
Confidence            9999999999999997532   357899999999999999999999999999999999999999999997653 666677


Q ss_pred             HhhhHHHHHHHHHHHHHhhcccC
Q 023057          266 SGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       266 ~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      ..++.+|+.+++.++|++++++|
T Consensus       256 ~~~~~~r~~~aa~~lG~a~~al~  278 (412)
T PLN02526        256 KVLAVSRVMVAWQPIGISMGVYD  278 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            78899999999999999999874

>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit

Probab=100.00  E-value=2.8e-43  Score=320.74  Aligned_cols=252  Identities=24%  Similarity=0.349  Sum_probs=221.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCcccc--cccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHH
Q 023057           29 SLLFDDTQLQFKESVGQFARENIAPRAA--NIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEIS  106 (288)
Q Consensus        29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~  106 (288)
                      +.++++|. ++++.+++|+++.+.+...  ..|+.+.+|.  ++|++|++.||+++.+|++|||.|+++.+.+.++|+++
T Consensus         2 ~~~~~eq~-~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~e~G~~~l~vPe~~GG~G~~~~~~~~v~eel~   78 (378)
T TIGR03203         2 FDLSEEQR-LLKESVEGLLKTSYDFDSRKKYQKEKGGWSK--AVWGKLAEQGLLGLPFSEADGGFGAGSVETMIVMEALG   78 (378)
T ss_pred             CCCCHHHH-HHHHHHHHHHHhhCCHHHHHHHHhccCCCCH--HHHHHHHHCCCcccccchhcCCCCCCHHHHHHHHHHHh
Confidence            45789999 9999999999998876543  2467788999  99999999999999999999999999999999999999


Q ss_pred             hhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeeee
Q 023057          107 RASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWC  186 (288)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v  186 (288)
                      +.+.+.++  ..+..++..++..+|+++||++|||++++|+.++++++|||+.|||...+.|++++++|+|+|||+|.||
T Consensus        79 ~~~~~~~~--~~~~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~a~a~tEp~~gsd~~~~~t~a~~~g~~~~l~G~K~~v  156 (378)
T TIGR03203        79 KALVLEPY--LATVVIGGGFLRHAGSAAQKAAHLPGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKKTGDGWVIDGEKFVV  156 (378)
T ss_pred             CcccchHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHhCCChhheeeecCCCCCCCcccceEEEEEcCCEEEEEeEEEEe
Confidence            98765443  2222244567888999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCEEEEEEEeCCCC-CCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHHHH
Q 023057          187 TNGPVAQTLVVYAKTDIKA-GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMM  265 (288)
Q Consensus       187 ~~~~~ad~~lv~a~~~~~~-~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~~~  265 (288)
                      +++..||+++|+++++++. +++++++|+||++.||+++.+.+.+.|   .++++|+|+||+||+++++|.++.|+..+.
T Consensus       157 t~a~~Ad~~lv~ar~~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~g---~~~~~l~fd~v~vp~~~~lg~~~~g~~~~~  233 (378)
T TIGR03203       157 LNGETADTLIVTARTKGARRDRTGIGVFLVPAGAKGVTIKGYPTQDG---LHAADITFTGVVVGADAAIGDPENALPLIE  233 (378)
T ss_pred             cCCccCCEEEEEEecCCCCCCCCceEEEEEECCCCCceeccccccCC---CceeeEEECCCcccHHhhcCCcchHHHHHH
Confidence            9999999999999975432 345789999999999999965555554   456899999999999999999888999999


Q ss_pred             HhhhHHHHHHHHHHHHHhhcccC
Q 023057          266 SGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       266 ~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      ..++..|+.+++.++|++++++|
T Consensus       234 ~~l~~~r~~~aa~~~G~a~~al~  256 (378)
T TIGR03203       234 RVVDDARAALCAEAVGLMDESLK  256 (378)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999875

Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.

>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed

Probab=100.00  E-value=4.1e-43  Score=338.46  Aligned_cols=277  Identities=23%  Similarity=0.395  Sum_probs=237.7

Q ss_pred             cccccccccccccccccccCCCCC-CCCHHHHHHHHHH-HHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCC
Q 023057            6 GARSLCASFFTKKQKHSAAFSSTS-LLFDDTQLQFKES-VGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGIT   83 (288)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~   83 (288)
                      |..++-.++|.++++++..+.++. .+|+|++ ++++. +++|++. .. ...+.++.+.+|+  ++|+.|++.||+++.
T Consensus        53 g~~~~~~~lF~G~~~~~~l~~~p~~~Ls~ee~-~~~d~~v~~l~~~-~~-~~~~~~~~~~~P~--e~w~~L~e~G~~gl~  127 (777)
T PRK09463         53 GTVWWEGELFSGKPDWKKLLNYPKPTLTAEEQ-AFLDGPVEELCRM-VN-DWQITHELADLPP--EVWQFIKEHGFFGMI  127 (777)
T ss_pred             CCchhhhhhcCCCCChHHhcCCCCCCCCHHHH-HHHHHHHHHHHHH-HH-HHHHhccccCCCH--HHHHHHHHCCCCcCC
Confidence            677888899999999999888775 4899999 99996 8877653 21 1122234478999  999999999999999


Q ss_pred             CCcCCCCCCCCHHHHHHHHHHHHhhCCchhhHHHhhhhHH-HHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCC
Q 023057           84 APQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLC-INQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSD  162 (288)
Q Consensus        84 ~pe~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~-~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d  162 (288)
                      +|++|||.|++..+.+.++|++++++++++..+..|..++ ..+|..+|+++||++|||++++|+.++|+++|||++|||
T Consensus       128 IPeeyGG~Gls~~~~a~v~eeLg~~~~s~a~~~~v~~slg~~~lL~~~GteeQK~~yLp~La~Ge~i~afAlTEP~aGSD  207 (777)
T PRK09463        128 IPKEYGGLEFSAYAHSRVLQKLASRSGTLAVTVMVPNSLGPGELLLHYGTDEQKDHYLPRLARGEEIPCFALTSPEAGSD  207 (777)
T ss_pred             CchhhCCCCCCHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCcCCC
Confidence            9999999999999999999999999988776666665454 357889999999999999999999999999999999999


Q ss_pred             CCCCeEEE-----EEeCC---eEEEeeEeeeeeCCCCCCEEEEEEEe-CCC-----CCCCceEEEEEeCCCCCeEecccc
Q 023057          163 VVGMKCKA-----DRVDG---GYIINGNKMWCTNGPVAQTLVVYAKT-DIK-----AGSKGITAFIIEKGMPGFSTAQKL  228 (288)
Q Consensus       163 ~~~~~~~a-----~~~~~---g~~l~G~k~~v~~~~~ad~~lv~a~~-~~~-----~~~~~~~~~lv~~~~~gv~~~~~~  228 (288)
                      ...+.+++     +++++   ||+|||+|.|||+++.||+++|++++ +++     .++.++++|+||++.|||++.+.+
T Consensus       208 aa~i~Tta~~~~a~~dGd~~~g~vLNG~K~~IT~a~~Ad~l~V~ar~~dp~~~~g~~~~~Git~fLVp~d~pGV~ig~~~  287 (777)
T PRK09463        208 AGSIPDTGVVCKGEWQGEEVLGMRLTWNKRYITLAPIATVLGLAFKLYDPDGLLGDKEDLGITCALIPTDTPGVEIGRRH  287 (777)
T ss_pred             cccccccceeeeeeecCCcccceEEEEEEEeeCCCCccCEEEEEEEecCcccccCCCCCCceEEEEEECCCCCeEecccc
Confidence            98877543     44555   69999999999999999999998885 322     124578999999999999998889


Q ss_pred             cccCCCCCceeeEEeceeeeCCCCcccCC---CccHHHHHHhhhHHH-HHHHHHHHHHhhcccC
Q 023057          229 DKLGMRGSDTCELVFENCFVPNENVLGQE---GKGVYVMMSGLDLER-LVLAAGPLGIMQAPVR  288 (288)
Q Consensus       229 ~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~---~~~~~~~~~~~~~~r-~~~aa~~~G~a~~al~  288 (288)
                      +++|++ ..++.++|+||+||.+++||..   +.|+..+...++.+| +.+++.++|+++++++
T Consensus       288 ~~lG~r-~~~g~v~fddV~VP~d~lLG~~~~~G~G~~~l~~~L~~gR~i~laA~avG~ar~al~  350 (777)
T PRK09463        288 FPLNVP-FQNGPTRGKDVFIPLDYIIGGPKMAGQGWRMLMECLSVGRGISLPSNSTGGAKLAAL  350 (777)
T ss_pred             cccCcc-cccceEEeeeeecCHHHhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998 5688999999999999999874   789999999999999 8999999999999874

>PRK13026 acyl-CoA dehydrogenase; Reviewed

Probab=100.00  E-value=3.3e-42  Score=331.12  Aligned_cols=277  Identities=23%  Similarity=0.332  Sum_probs=234.5

Q ss_pred             cccccccccccccccccccCCCCC-CCCHHHHHHHHH-HHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCC
Q 023057            6 GARSLCASFFTKKQKHSAAFSSTS-LLFDDTQLQFKE-SVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGIT   83 (288)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~l~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~   83 (288)
                      |..++-.++|.++++++.++..+. .+++|++ .+.+ .++.+++ .+.+. ...++.+.+|+  ++|+.|++.||+++.
T Consensus        52 ~~~~~~~~lf~G~~~~~~l~~~p~~~l~~eeq-~fl~~~v~~l~~-~~~e~-~~~~~~~~~P~--evw~~Lae~Gl~gl~  126 (774)
T PRK13026         52 GDVWWEGELFSGKPDWQKLHSYPKPTLTAEEQ-AFIDNEVETLLT-MLDDW-DIVQNRKDLPP--EVWDYLKKEGFFALI  126 (774)
T ss_pred             CCcchhhhhcCCCCChhhcCCCCccccCHHHH-HHHHHHHHHHHh-hhhhh-hhhhhhcCCCH--HHHHHHHHCCCCcCC
Confidence            566777889999999999887775 4899888 6666 6777754 22222 23355688999  999999999999999


Q ss_pred             CCcCCCCCCCCHHHHHHHHHHHHhhCCchhhHHHhhhhHH-HHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCC
Q 023057           84 APQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLC-INQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSD  162 (288)
Q Consensus        84 ~pe~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~-~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d  162 (288)
                      +|++|||.|++..+.+.++|++++++.+++..+.+|..++ ..+|..+|+++|+++|||++++|+.++|+++|||++|||
T Consensus       127 IPeeyGGlG~s~~~~a~V~eela~~~~s~a~~~~v~~slg~~~lL~~~GTeEQK~~yLP~LAsGe~i~afAlTEP~aGSD  206 (774)
T PRK13026        127 IPKEYGGKGFSAYANSTIVSKIATRSVSAAVTVMVPNSLGPGELLTHYGTQEQKDYWLPRLADGTEIPCFALTGPEAGSD  206 (774)
T ss_pred             CChhhCCCCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHhhhHHHhCCCeEEEEEecCCCCCCc
Confidence            9999999999999999999999999888776666665444 457889999999999999999999999999999999999


Q ss_pred             CCCCeEEEE-----EeCC---eEEEeeEeeeeeCCCCCCEEEEEEEe-CCC-----CCCCceEEEEEeCCCCCeEecccc
Q 023057          163 VVGMKCKAD-----RVDG---GYIINGNKMWCTNGPVAQTLVVYAKT-DIK-----AGSKGITAFIIEKGMPGFSTAQKL  228 (288)
Q Consensus       163 ~~~~~~~a~-----~~~~---g~~l~G~k~~v~~~~~ad~~lv~a~~-~~~-----~~~~~~~~~lv~~~~~gv~~~~~~  228 (288)
                      ...+.++++     +++|   ||+|||+|.|||+++.||+++|.++. +++     +++.++++|+||++.|||++.+.+
T Consensus       207 aasi~Ttav~t~a~~dGd~~~gwvLNG~K~~IT~A~~Ad~~~v~ar~~dpd~~~g~~~~~GiT~fLVp~d~pGV~ig~~~  286 (774)
T PRK13026        207 AGAIPDTGIVCRGEFEGEEVLGLRLTWDKRYITLAPVATVLGLAFKLRDPDGLLGDKKELGITCALIPTDHPGVEIGRRH  286 (774)
T ss_pred             hhcccceeeeeeeeecCCccccEEEEEEEEeecCccccCEEEEEEEeeCccccccCCCCCceEEEEEECCCCCeEeeccc
Confidence            988876554     4566   69999999999999999999877763 332     134578999999999999998889


Q ss_pred             cccCCCCCceeeEEeceeeeCCCCcccCC---CccHHHHHHhhhHHH-HHHHHHHHHHhhcccC
Q 023057          229 DKLGMRGSDTCELVFENCFVPNENVLGQE---GKGVYVMMSGLDLER-LVLAAGPLGIMQAPVR  288 (288)
Q Consensus       229 ~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~---~~~~~~~~~~~~~~r-~~~aa~~~G~a~~al~  288 (288)
                      +++|++.. ++.++|+||+||.+++||.+   ++|+..+...++.+| +.+++.++|+++++++
T Consensus       287 ~~lG~~~~-~g~v~fdDV~VP~d~lLG~~~~~G~G~~~l~~~L~~gR~i~laA~a~G~A~~al~  349 (774)
T PRK13026        287 NPLGMAFM-NGTTRGKDVFIPLDWIIGGPDYAGRGWRMLVECLSAGRGISLPALGTASGHMATR  349 (774)
T ss_pred             cccccCcc-cceEEEeeeEccHHHhcCCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998864 58999999999999999975   789999999999999 8999999999999874

>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit

Probab=100.00  E-value=8.4e-41  Score=306.29  Aligned_cols=253  Identities=26%  Similarity=0.434  Sum_probs=215.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCcccccc-cccCCCCC--cHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHH
Q 023057           29 SLLFDDTQLQFKESVGQFARENIAPRAANI-DQSNSFPQ--DVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEI  105 (288)
Q Consensus        29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~-d~~~~~~~--~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l  105 (288)
                      +.++++|. +|++++++|+++++.+...+. .+...+|.  ..++|+++.++||+++.+|++|||.|+++.+.+.++|++
T Consensus         2 ~~lteeq~-~l~~~~r~f~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~e~G~~gl~vPe~~GG~G~~~~~~~~v~eel   80 (395)
T TIGR03204         2 LAFSKEEQ-AFRDEVRSFFKDNVPADTRQKLVEGRHLTKDEMVTWWRILNKKGWGVSHWPKQYGGTGWTSVQHYIFNEEL   80 (395)
T ss_pred             CCCCHHHH-HHHHHHHHHHHHhCChhhhhhhhccCCCChHHHHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHHHHHH
Confidence            56899999 999999999999988775442 22333442  127999999999999999999999999999999999999


Q ss_pred             HhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeee
Q 023057          106 SRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMW  185 (288)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~  185 (288)
                      ++++.++++...++  ++...+..+|+++|+++|||++++|+.++++++|||+.|||...+.|++++++|+|+|||+|.|
T Consensus        81 g~~~~~~~~~~~~~--~~~~~l~~~g~~~q~~~~L~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~g~~~~LnG~K~~  158 (395)
T TIGR03204        81 QSAPAPQPLAFGVS--MVGPVIYTFGNEEQKKRFLPRIANVDDWWCQGFSEPGSGSDLASLKTKAEKKGDKWIINGQKTW  158 (395)
T ss_pred             HhcCCCccchhHhH--hhHHHHHHhCCHHHHHHHHHHHhCCchheEeEecCCCCCCChhhceEEEEEcCCEEEEeeEEEe
Confidence            99998887644333  3344678889999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCCEEEEEEEeCCCC-CCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHHH
Q 023057          186 CTNGPVAQTLVVYAKTDIKA-GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVM  264 (288)
Q Consensus       186 v~~~~~ad~~lv~a~~~~~~-~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~~  264 (288)
                      ++++..||+++|.+++++++ +.+++++|+||.+.|||++.+.....|  +.++++|+|+||+||++++++..+.++...
T Consensus       159 vt~a~~Ad~~lv~a~~~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~~--~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~  236 (395)
T TIGR03204       159 TTLAQHADWIFCLCRTDPTAKKQMGISFILVDMKSKGITVRPIQTIDG--GVEVNEVFFDDVEVPYENLVGEENKGWDYA  236 (395)
T ss_pred             ecCCccCCeEEEEEEeCCCCCCCCCeEEEEEeCCCCCeEecChhhccC--CCceeEEEEcceEEcHHHcCCCCCchHHHH
Confidence            99999999999999975321 235688999999999999955444333  678999999999999999999888899988


Q ss_pred             HHhhhHHHHHHHHHHHHHhhcccC
Q 023057          265 MSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       265 ~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      ...++..|+..++  +|+++++++
T Consensus       237 ~~~l~~~r~g~aa--~g~a~~~l~  258 (395)
T TIGR03204       237 KFLLGNERTGIAR--VGVSKERIR  258 (395)
T ss_pred             HHHHHHHHHHHHH--HHHHHHHHH
Confidence            9999999998876  799888764

Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.

>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2

Probab=100.00  E-value=5.4e-41  Score=307.74  Aligned_cols=253  Identities=24%  Similarity=0.365  Sum_probs=214.5

Q ss_pred             HHHHHHHHHHHHHHhhcCcccccccccC-------CCCC--cHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHH
Q 023057           35 TQLQFKESVGQFARENIAPRAANIDQSN-------SFPQ--DVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEI  105 (288)
Q Consensus        35 ~~~~l~~~~~~~~~~~~~~~~~~~d~~~-------~~~~--~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l  105 (288)
                      ++ +|++++|+|+++++.|...++++.+       .+|+  ..++|+.+++.||+++.+|++|||.|+++.+.+.++|++
T Consensus         3 ~~-~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~P~~~GG~g~~~~~~~~v~e~l   81 (394)
T cd01155           3 AQ-ELRARVKAFMEEHVYPAEQEFLEYYAEGGDRWWTPPPIIEKLKAKAKAEGLWNLFLPEVSGLSGLTNLEYAYLAEET   81 (394)
T ss_pred             HH-HHHHHHHHHHHHhcCccHHHHHhhcccccccccCCchhHHHHHHHHHhCCCCCCCCChhhCCCCcCHHHHHHHHHHH
Confidence            45 8999999999999998766665321       1232  128999999999999999999999999999999999999


Q ss_pred             HhhC-CchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCC-CCCCCCCCeEEEEEeCCeEEEeeEe
Q 023057          106 SRAS-GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPN-AGSDVVGMKCKADRVDGGYIINGNK  183 (288)
Q Consensus       106 ~~~~-~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~-~g~d~~~~~~~a~~~~~g~~l~G~k  183 (288)
                      ++++ .+.++....+...+...+..+|+++|+++||+++++|+.++++++|||. .|+|...+.+++++++|||+|||+|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tE~~~~gsd~~~~~t~a~~~~~g~~LnG~k  161 (394)
T cd01155          82 GRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKKQWLEPLLDGKIRSAFAMTEPDVASSDATNIECSIERDGDDYVINGRK  161 (394)
T ss_pred             hhhcccchheeecccccccHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCCCchhhCEEEEEEECCEEEEEEEE
Confidence            9986 3333222222212345788999999999999999999999999999997 6789888999999999999999999


Q ss_pred             eeeeCCCC--CCEEEEEEEeCCCC--CCCceEEEEEeCCCCCeEecccccccCCCC--CceeeEEeceeeeCCCCcccCC
Q 023057          184 MWCTNGPV--AQTLVVYAKTDIKA--GSKGITAFIIEKGMPGFSTAQKLDKLGMRG--SDTCELVFENCFVPNENVLGQE  257 (288)
Q Consensus       184 ~~v~~~~~--ad~~lv~a~~~~~~--~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~--~~~~~v~~~~v~vp~~~~l~~~  257 (288)
                      .|+||+.+  +|+++|.+++++++  ++.++.+|+||++.||+++.++|+++|+++  +++++|.|+||+||++++++..
T Consensus       162 ~~vs~~~~~~a~~~~v~a~~~~~~~~~~~~~~~flVp~~~~Gv~i~~~~~~~G~r~~~t~s~~v~f~dv~Vp~~~~lg~~  241 (394)
T cd01155         162 WWSSGAGDPRCKIAIVMGRTDPDGAPRHRQQSMILVPMDTPGVTIIRPLSVFGYDDAPHGHAEITFDNVRVPASNLILGE  241 (394)
T ss_pred             EEEcCCCCCCCCEEEEEEEeCCCcCCCCCceEEEEEeCCCCCeEeeccccccCCCCCCCCeeEEEEccEEecHHHcCCCC
Confidence            99999954  78999999875431  234688999999999999988899999997  6789999999999999999988


Q ss_pred             CccHHHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057          258 GKGVYVMMSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       258 ~~~~~~~~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      ++++......++..|+..++.++|++++++|
T Consensus       242 ~~g~~~~~~~~~~~r~~~~a~~lG~a~~al~  272 (394)
T cd01155         242 GRGFEIAQGRLGPGRIHHCMRLIGAAERALE  272 (394)
T ss_pred             ChHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            8898888888999999999999999999874

FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.

>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5

Probab=100.00  E-value=7.3e-40  Score=301.34  Aligned_cols=244  Identities=30%  Similarity=0.513  Sum_probs=215.1

Q ss_pred             HHHHHHHHHhhcCcccccccccCC--------CCCc-HHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhCC
Q 023057           40 KESVGQFARENIAPRAANIDQSNS--------FPQD-VNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASG  110 (288)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~d~~~~--------~~~~-~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~~~~~  110 (288)
                      ++.+++|+.+.+.|.+.++|++..        +|+. .++|++|++.||+++.+|++|||.|.++.++..+.|+++++|+
T Consensus         2 ~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~p~~~~e~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l~~~~~   81 (407)
T cd01153           2 LEEVARLAENVLAPLNADGDREGPVFDDGRVVVPPPFKEALDAFAEAGWMALGVPEEYGGQGLPITVYSALAEIFSRGDA   81 (407)
T ss_pred             hHHHHHHHHHHhhhhHHhHhccCCcccCCceEcChhHHHHHHHHHHCCCCCCCCccccCCCCCCHHHHHHHHHHHHhhhH
Confidence            578899999999988777776653        8831 2789999999999999999999999999999999999999999


Q ss_pred             chhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEe-CCeEEEeeEeeeeeCC
Q 023057          111 SVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWCTNG  189 (288)
Q Consensus       111 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~-~~g~~l~G~k~~v~~~  189 (288)
                      ++++.+..|.  +...+..+|+++|+++|++++.+|+.++|+++|||++|||...+.++++++ +|||+|||+|.|+||+
T Consensus        82 s~~~~~~~~~--~~~~l~~~g~~~~~~~~l~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~~ggy~l~G~K~~is~~  159 (407)
T cd01153          82 PLMYASGTQG--AAATLLAHGTEAQREKWIPRLAEGEWTGTMCLTEPDAGSDLGALRTKAVYQADGSWRINGVKRFISAG  159 (407)
T ss_pred             HHHHHHHHhH--HHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCCcccceEEEEECCCCcEEEeeEEEEEeCC
Confidence            9888766554  345677889999999999999999999999999999999999999999998 5679999999999999


Q ss_pred             CCC----CEEEEEEEeCCC-CCCCceEEEEEeCCC-----CCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCc
Q 023057          190 PVA----QTLVVYAKTDIK-AGSKGITAFIIEKGM-----PGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGK  259 (288)
Q Consensus       190 ~~a----d~~lv~a~~~~~-~~~~~~~~~lv~~~~-----~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~  259 (288)
                      ..|    ++++|.++++++ ++..++.+|+||++.     |||++.+.|+++|++++++++|.|+||+||   +++.++.
T Consensus       160 ~~a~~~~~~~~v~a~~~~~~~~~~~~~~flVp~~~~~~~~~gv~i~~~~~~~G~r~t~s~~v~f~~v~Vp---~lg~~~~  236 (407)
T cd01153         160 EHDMSENIVHLVLARSEGAPPGVKGLSLFLVPKFLDDGERNGVTVARIEEKMGLHGSPTCELVFDNAKGE---LIGEEGM  236 (407)
T ss_pred             CcccccccEEEEEEeCCCCCCCCCceEEEEEeccCcCCCCCCeEeccchhccCCCCCCeEEEEEcCEEEe---eeCCCCc
Confidence            876    577888886532 233468899999987     899999999999999999999999999999   8888888


Q ss_pred             cHHHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057          260 GVYVMMSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       260 ~~~~~~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      ++......++..|+.+++.++|+++++++
T Consensus       237 g~~~~~~~l~~~r~~~aa~~lG~a~~al~  265 (407)
T cd01153         237 GLAQMFAMMNGARLGVGTQGTGLAEAAYL  265 (407)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99888899999999999999999999874

Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.

>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]

Probab=100.00  E-value=2.3e-39  Score=296.91  Aligned_cols=258  Identities=41%  Similarity=0.722  Sum_probs=227.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhcCcccccccc---cCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHH
Q 023057           28 TSLLFDDTQLQFKESVGQFARENIAPRAANIDQ---SNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEE  104 (288)
Q Consensus        28 ~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~  104 (288)
                      ...+++++. ++.+.+++|+++.+.+...+.++   .+.+|.  +.|+++++.||+++.+|+++||.+.+..+...+.++
T Consensus         2 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~l~~~G~~~~~~p~e~GG~~~~~~~~~~~~e~   78 (393)
T COG1960           2 DFDLSEEQE-ALRAEVREFAEEELAPEAAEIDRRIEDERFPR--ELLRALAEAGLLGLTIPEEYGGLGLSPLEQAAVLEE   78 (393)
T ss_pred             CCcCCHHHH-HHHHHHHHHHHHhcCcchhhhhhhcccccCHH--HHHHHHHhCCcccCCCChhhCCCCcchhHHHHHHHH
Confidence            344567888 99999999999999877766664   678887  999999999999999999999999999999999999


Q ss_pred             HHhhCCchhhHHHhhhhH---HHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCe-EEEEEeCCeEEEe
Q 023057          105 ISRASGSVGLSYGAHSNL---CINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMK-CKADRVDGGYIIN  180 (288)
Q Consensus       105 l~~~~~~~~~~~~~~~~~---~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~-~~a~~~~~g~~l~  180 (288)
                      +++.+++.++.+..+...   ....+..+|+++|+++|||++.+|+.++|+++|||++|||...+. |++++.+++|+||
T Consensus        79 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~~~~l~~~~~G~~~~~~~~tEp~~Gsd~~~~~~t~a~~~~g~~~ln  158 (393)
T COG1960          79 LARADAGGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLASGELIGAFALTEPGAGSDLASLRTTAAVRDDGDYVLN  158 (393)
T ss_pred             HHhhCcchhhhHHHhccccccchHHHHHcCCHHHHHHhchhhhCCchhheeeccCCCCCcchhcCceeEEEecCCCEEEE
Confidence            999999877655554322   223566799999999999999999999999999999999999987 6677766669999


Q ss_pred             eEeeeeeCCCCCCEEEEEEEeCCC-CCCCceEEEEEeCC-CCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCC
Q 023057          181 GNKMWCTNGPVAQTLVVYAKTDIK-AGSKGITAFIIEKG-MPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEG  258 (288)
Q Consensus       181 G~k~~v~~~~~ad~~lv~a~~~~~-~~~~~~~~~lv~~~-~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~  258 (288)
                      |+|.|+||+..||+++|+++++++ ++++++++|+||.+ .||+++.+.|++.|++++++++|.|+||+||.+++||..+
T Consensus       159 G~K~~is~~~~ad~~~v~Ar~~~~~~~~~gis~flV~~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~lig~~~  238 (393)
T COG1960         159 GQKIWISNAPVADWLLVLARTDPAPGKHKGISLFLVPKDLTPGVSVGPILKKMGLRGSATGEVFFDDVRVPAENLLGEEG  238 (393)
T ss_pred             eEEEEEcCCCCCCEEEEEEEcCCcccccCceEEEEEeCCCCCCeeeccccCcCCcCCCCeeEEEECCeeccHHHcCCcCC
Confidence            999999999999999999998765 45678999999999 5999997766533999999999999999999999999999


Q ss_pred             ccHHHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057          259 KGVYVMMSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       259 ~~~~~~~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      .|+......++..|+.+++.++|++++|++
T Consensus       239 ~g~~~~~~~l~~~r~~~aa~~~G~a~~al~  268 (393)
T COG1960         239 DGFKIAMETLNVERLGIAAQALGIAEAALE  268 (393)
T ss_pred             chHHHHHHhhchHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999874

>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26

Probab=100.00  E-value=1.1e-39  Score=297.72  Aligned_cols=249  Identities=23%  Similarity=0.411  Sum_probs=217.3

Q ss_pred             HHHHHHHHHHHHHHHHhhcCcccccc-----cccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHh
Q 023057           33 DDTQLQFKESVGQFARENIAPRAANI-----DQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISR  107 (288)
Q Consensus        33 ~~~~~~l~~~~~~~~~~~~~~~~~~~-----d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~~  107 (288)
                      ++|. ++.+.+++|+++++.|.....     ++.+.+|.  ++|++|++.||+++.+|+++||.|.++.+++.++|++++
T Consensus         1 ~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~l~~   77 (380)
T cd01152           1 PSEE-AFRAEVRAWLAAHLPPELREESALGYREGREDRR--RWQRALAAAGWAAPGWPKEYGGRGASLMEQLIFREEMAA   77 (380)
T ss_pred             CcHH-HHHHHHHHHHHhcCCccccccccccccccchHHH--HHHHHHHhCCCCccCCChhhCCCCCCHHHHHHHHHHHHh
Confidence            3677 999999999999998875432     34566787  889999999999999999999999999999999999999


Q ss_pred             hCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeeeee
Q 023057          108 ASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCT  187 (288)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v~  187 (288)
                      .++++++.+..+. .+...+..+|+++|+++||+++.+|+.+.++++|||+.|+|...+.++++++++||+|||+|.|+|
T Consensus        78 ~~~~~~~~~~~~~-~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~L~G~K~~it  156 (380)
T cd01152          78 AGAPVPFNQIGID-LAGPTILAYGTDEQKRRFLPPILSGEEIWCQGFSEPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTS  156 (380)
T ss_pred             cCCCcccchhhHH-HHHHHHHHhCCHHHHHHHhHHHhCCchhheeecCCCCCCcchhhCeeeEEEcCCeEEEecEEEEEc
Confidence            9999887522222 345578889999999999999999998899999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCCCC-CCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHHHHH
Q 023057          188 NGPVAQTLVVYAKTDIKA-GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMS  266 (288)
Q Consensus       188 ~~~~ad~~lv~a~~~~~~-~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~~~~  266 (288)
                      ++..+|+++|.++++++. ++.++.+|+||++.||+++.+.|+++|  ++++++++|+||+||.+++++.++.++..+..
T Consensus       157 ~~~~ad~~lv~a~~~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~g--~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~  234 (380)
T cd01152         157 GAHYADWAWLLVRTDPEAPKHRGISILLVDMDSPGVTVRPIRSING--GEFFNEVFLDDVRVPDANRVGEVNDGWKVAMT  234 (380)
T ss_pred             CccccCEEEEEEEeCCCccCcCCeEEEEEeCCCCceEeeehhhccC--CCCcceEEecCcCcchhcccCCCCchHHHHHH
Confidence            999999999999975422 234688999999999999988888877  57889999999999999999998889888888


Q ss_pred             hhhHHHHHHHHHHHHHhhccc
Q 023057          267 GLDLERLVLAAGPLGIMQAPV  287 (288)
Q Consensus       267 ~~~~~r~~~aa~~~G~a~~al  287 (288)
                      .++..|+..++.+.|+++.++
T Consensus       235 ~l~~~r~~~~~~~~~~~~~a~  255 (380)
T cd01152         235 TLNFERVSIGGSAATFFELLL  255 (380)
T ss_pred             HHHhcccccchhhhHHHHHHH
Confidence            888889988888888887665

Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.

>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C

Probab=100.00  E-value=2.4e-39  Score=295.29  Aligned_cols=235  Identities=23%  Similarity=0.305  Sum_probs=204.7

Q ss_pred             HHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhCCchhhHHHhhhhH
Q 023057           43 VGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNL  122 (288)
Q Consensus        43 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~  122 (288)
                      ++++. +.+.+.+.++|+.+.+|.  +.|+.|++.||+++.+|++|||.|+++.+.+.++|+++++|+++++.+.+|. .
T Consensus         3 ~~~~~-~~~~~~a~~~d~~~~~p~--~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~-~   78 (377)
T cd01163           3 ARPLA-ARIAEGAAERDRQRGLPY--EEVALLRQSGLGTLRVPKEYGGLGASLPDLYEVVRELAAADSNIAQALRAHF-G   78 (377)
T ss_pred             HHHHH-HHHhhhhhhhhhcCCCCH--HHHHHHHHCCCccccCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH-H
Confidence            45553 346677778899999999  9999999999999999999999999999999999999999999998887776 4


Q ss_pred             HHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeeeeeCCCCCCEEEEEEEeC
Q 023057          123 CINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD  202 (288)
Q Consensus       123 ~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v~~~~~ad~~lv~a~~~  202 (288)
                      ....+..+|+++|+++|++++.+|+.+ +.+++||+.++ .....+++++++|||+|||+|.|+|++..||+++|.++++
T Consensus        79 ~~~~l~~~g~~~~~~~~l~~~~~g~~~-~~a~tE~~~~~-~~~~~~~~~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~~  156 (377)
T cd01163          79 FVEALLLAGPEQFRKRWFGRVLNGWIF-GNAVSERGSVR-PGTFLTATVRDGGGYVLNGKKFYSTGALFSDWVTVSALDE  156 (377)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHhCCCeE-EEeecCCCCCC-CCCceEEEEecCCEEEEeceEEeecCCccceEEEEEEEcC
Confidence            456788899999999999999999965 56999998765 5566677778889999999999999999999999999865


Q ss_pred             CCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHHHHHhhhHHHHHHHHHHHHH
Q 023057          203 IKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGI  282 (288)
Q Consensus       203 ~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~~~~~~~~~r~~~aa~~~G~  282 (288)
                      +    .++.+|+||.+.||+++.+.|+++|++++++++|+|+||+||.+++++..+.++. ....+..+++.+++.++|+
T Consensus       157 ~----~~~~~~lV~~~~~Gv~i~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~lg~~~~g~~-~~~~~~~~~l~~aa~~lG~  231 (377)
T cd01163         157 E----GKLVFAAVPTDRPGITVVDDWDGFGQRLTASGTVTFDNVRVEPDEVLPRPNAPDR-GTLLTAIYQLVLAAVLAGI  231 (377)
T ss_pred             C----CcEEEEEEeCCCCceeecCCcccccCccCCcceEEEeeEEECHHHccCCCccccc-cccccHHHHHHHHHHHHHH
Confidence            3    2567899999999999988899999999999999999999999999998776654 2234567899999999999


Q ss_pred             hhcccC
Q 023057          283 MQAPVR  288 (288)
Q Consensus       283 a~~al~  288 (288)
                      +++++|
T Consensus       232 a~~al~  237 (377)
T cd01163         232 ARAALD  237 (377)
T ss_pred             HHHHHH
Confidence            999874

DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.

>PLN02876 acyl-CoA dehydrogenase

Probab=100.00  E-value=3.3e-38  Score=312.22  Aligned_cols=257  Identities=25%  Similarity=0.399  Sum_probs=218.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCccccccccc-------CCCC-CcHHHHHHHH-hCCCCCCCCCcC------------
Q 023057           29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQS-------NSFP-QDVNLWKLMG-NFNLHGITAPQE------------   87 (288)
Q Consensus        29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~-------~~~~-~~~~~~~~l~-~~Gl~~~~~pe~------------   87 (288)
                      +.+|+++. ++++++++|+++++.|...++++.       ..+| .  +.|+++. ++||+++.+|++            
T Consensus       400 ~~~s~~~~-~l~~~~~~f~~~~~~p~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~G~~~~~~p~~~~~~~~~~~~~~  476 (822)
T PLN02876        400 FVPSEKVL-ELRKKLIKFMEDHIYPMENEFYKLAQSSSRWTVHPEE--ERLKELAKKEGLWNLWIPLDSAARARKLLFED  476 (822)
T ss_pred             cCCCHHHH-HHHHHHHHHHHHHccCccHHHHhhcccccccccCcch--HHHHHHHHHcCcccCCCCchhhhhhhhccccc
Confidence            56799999 999999999999988766554422       1366 5  7888875 999999999995            


Q ss_pred             ------------CCCCCCCHHHHHHHHHHHHhhCCchh-hHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEe
Q 023057           88 ------------YGGLGLGYLYHCIAMEEISRASGSVG-LSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAM  154 (288)
Q Consensus        88 ------------~GG~g~~~~~~~~v~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~  154 (288)
                                  +||.|+++.+.+.++|++|+++.+.. +.+..+...+...|..+|+++||++||+++++|+.++|+++
T Consensus       477 ~~~~~~~~~~~~~GG~G~~~~~~~~~~Eelg~~~~~~~~~~~~~~~~~~~~~l~~~gt~eqk~~~L~~l~~G~~~~~~a~  556 (822)
T PLN02876        477 NKHMVSGDSADQLLGAGLSNLEYGYLCEIMGRSVWAPQVFNCGAPDTGNMEVLLRYGNKEQQLEWLIPLLEGKIRSGFAM  556 (822)
T ss_pred             ccccccccccccCCCCCCCHHHHHHHHHHHhccchHHHHhcccCcccccHHHHHHhCCHHHHHHHHHHHhCCCceeEEEe
Confidence                        99999999999999999999864422 21222222334568889999999999999999999999999


Q ss_pred             cCCC-CCCCCCCCeEEEEEeCCeEEEeeEeeeeeCC--CCCCEEEEEEEeCCCC-CCCceEEEEEeCCCCCeEecccccc
Q 023057          155 SEPN-AGSDVVGMKCKADRVDGGYIINGNKMWCTNG--PVAQTLVVYAKTDIKA-GSKGITAFIIEKGMPGFSTAQKLDK  230 (288)
Q Consensus       155 te~~-~g~d~~~~~~~a~~~~~g~~l~G~k~~v~~~--~~ad~~lv~a~~~~~~-~~~~~~~~lv~~~~~gv~~~~~~~~  230 (288)
                      |||+ +|||...+.|++++++|||+|||+|.|+||+  ..||+++|+++++++. +++++++|+||.+.|||++.++|++
T Consensus       557 tEp~~~gsd~~~~~t~a~~~g~g~vLnG~K~~vtga~~~~ad~~lv~ar~~~~~~~~~~~s~flV~~~~pGv~i~~~~~~  636 (822)
T PLN02876        557 TEPQVASSDATNIECSIRRQGDSYVINGTKWWTSGAMDPRCRVLIVMGKTDFNAPKHKQQSMILVDIQTPGVQIKRPLLV  636 (822)
T ss_pred             cCCCccCcccccceEEEEEcCCEEEEEeEEEEecCCCCCCCCEEEEEEecCCCCCCCCcceEEEEeCCCCCceeecccce
Confidence            9997 6799999999999999999999999999998  5799999999875422 2346789999999999999888999


Q ss_pred             cCCCCC--ceeeEEeceeeeCCCCcccCCCccHHHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057          231 LGMRGS--DTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       231 ~Gl~~~--~~~~v~~~~v~vp~~~~l~~~~~~~~~~~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      +|++++  ++++|+|+||+||++++++..++|+......++.+|+..|+.++|++++|++
T Consensus       637 ~G~r~~~~~~~~v~fd~V~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~vG~a~~ale  696 (822)
T PLN02876        637 FGFDDAPHGHAEISFENVRVPAKNILLGEGRGFEIAQGRLGPGRLHHCMRLIGAAERGMQ  696 (822)
T ss_pred             eccCCCCCCeeEEEEcceeechhheecCCCchHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            999974  5889999999999999999888888888888999999999999999999874

>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=100.00  E-value=1.8e-39  Score=293.09  Aligned_cols=279  Identities=30%  Similarity=0.528  Sum_probs=247.7

Q ss_pred             ccccccccccccccccccCCCCCCCCHHHHHHHHHHHHHHHHhhcCc--ccccccccCCCCCcHHHHHHHHhCCCCCCCC
Q 023057            7 ARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAP--RAANIDQSNSFPQDVNLWKLMGNFNLHGITA   84 (288)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~   84 (288)
                      .+|+...+|..+.+..+.+.+|.-+++|+. ++.+.+..-+++.+..  +.+..|+.+..++  +.|+.|++.|++++.+
T Consensus        52 ~rs~~~~lF~~~~v~k~v~~yPev~~~e~~-~~~~~~~~pl~r~f~e~~d~~k~d~~~~~~~--~t~e~l~elG~fgl~v  128 (634)
T KOG0137|consen   52 SRSFARGLFRGKLVTKDVFPYPEVITSEQK-ELLEQFVLPLERFFEEVNDSKKNDKLGKIEE--TTLEALRELGLFGLQV  128 (634)
T ss_pred             chhHHHHhhhhhhhhhhhcCCcccCcHHHH-HHHHhhhhhHHHhhhccchhhhhhhhcccch--hHHHHHHHhCceeecc
Confidence            455666667777777788888888899888 6664444333333322  2456788888999  9999999999999999


Q ss_pred             CcCCCCCCCCHHHHHHHHHHHHhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCC
Q 023057           85 PQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVV  164 (288)
Q Consensus        85 pe~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~  164 (288)
                      |++|+|.|+++.++..+.|.++-+|.++++.+..|...+...|..+|+++|+++|||++++|+.+.++++|||..|||..
T Consensus       129 ~~e~~G~G~~ntq~arl~e~~~~~D~~v~~tl~ahq~i~~k~l~lyGt~~Qk~kYL~~LaSg~~~~A~altE~s~Gsdaa  208 (634)
T KOG0137|consen  129 PSEFDGLGFCNTQYARLFEIVSVADLNVGVTLGAHQSIGLKGLLLYGTDEQKQKYLPKLASGKLIAAFALTEPSSGSDAA  208 (634)
T ss_pred             CcccCccccchHHHHHHhhccccccccceeeeccchhhheeeeeecCCHHHHHHHHHhhhcCCccceEEEecCCCCcccc
Confidence            99999999999999999999999999999999999877888899999999999999999999999999999999999999


Q ss_pred             CCeEEEEEeCCe--EEEeeEeeeeeCCCCCCEEEEEEEeCCC--C--CCCceEEEEEeCCCCCeEecccccccCCCCCce
Q 023057          165 GMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIK--A--GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDT  238 (288)
Q Consensus       165 ~~~~~a~~~~~g--~~l~G~k~~v~~~~~ad~~lv~a~~~~~--~--~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~  238 (288)
                      ...++++...||  |+|||.|.|++|+..||+++|+|++..+  +  ..++.++|||+++..|++...+..++|.+++.+
T Consensus       209 s~~~~a~~s~dg~~y~LNG~Kiwisn~g~Adif~VfAqt~~~~~~g~~k~k~T~Flver~~~Gvt~G~~e~k~GiKgsnt  288 (634)
T KOG0137|consen  209 SGRTTATLSPDGKHYVLNGSKIWISNGGLADIFTVFAQTEVDPADGEVKRKITAFLVERDFGGVTNGPPEKKMGIKGSNT  288 (634)
T ss_pred             cceeeeeecCCCCeEEEcCeeEEEecCccceeeeeeeccccCCCCccccCceEEEEEeccccCccCCCchhhhcccccce
Confidence            999999987765  9999999999999999999999998632  1  235789999999999999988899999999999


Q ss_pred             eeEEeceeeeCCCCcccCCCccHHHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057          239 CELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       239 ~~v~~~~v~vp~~~~l~~~~~~~~~~~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      .+|+|+++.||.+++||.++.|+++...+++.+|+..++..+|.|+++++
T Consensus       289 ~~v~f~~~ki~~envlG~~G~G~kva~nilnsgR~~~aaa~~G~mkr~I~  338 (634)
T KOG0137|consen  289 AEVHFEGVKIPIENVLGKPGDGFKVAMNILNSGRFGMAAALLGLMKRIIE  338 (634)
T ss_pred             eeeeeccccccHHHhcCCCCcchHHHHHHHccCCcchhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999873

>PTZ00456 acyl-CoA dehydrogenase; Provisional

Probab=100.00  E-value=7.5e-38  Score=298.48  Aligned_cols=256  Identities=25%  Similarity=0.408  Sum_probs=216.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCC---------CC-cHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHH
Q 023057           29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSF---------PQ-DVNLWKLMGNFNLHGITAPQEYGGLGLGYLYH   98 (288)
Q Consensus        29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~---------~~-~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~   98 (288)
                      .+++++..+++++.+++|+++.+.|...+.|+++.+         |+ ..++|+++.+.||+++.+|+++||.|+++...
T Consensus        53 ~~~~~~~~~~il~~a~~fa~~~~~p~~~~~D~~~~~~~~~g~v~~p~g~~e~~~~l~e~G~~~l~~Pee~GG~Gl~~~~~  132 (622)
T PTZ00456         53 TDVTKELMDSLLEEASKLATQTLLPLYESSDSEGCVLLKDGNVTTPKGFKEAYQALKAGGWTGISEPEEYGGQALPLSVG  132 (622)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHhcccchhhHhhccCccccCCcccCChhHHHHHHHHHHcCCCCCCCCcccCCCCcCHHHH
Confidence            457777777999999999999999988777776543         42 23799999999999999999999999998755


Q ss_pred             HHHHHHHHhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCe-E
Q 023057           99 CIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG-Y  177 (288)
Q Consensus        99 ~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g-~  177 (288)
                      ..+.|.+++.++++++....+. .+...|..+|+++||++|||++++|++++++++|||+.|||...+.|+|++++|| |
T Consensus       133 ~~~~E~~~~a~~~~~~~~~l~~-ga~~~L~~~Gs~eqk~~~Lp~l~sGe~~~t~alTEp~aGSD~~~l~T~A~~~gdG~y  211 (622)
T PTZ00456        133 FITRELMATANWGFSMYPGLSI-GAANTLMAWGSEEQKEQYLTKLVSGEWSGTMCLTEPQCGTDLGQVKTKAEPSADGSY  211 (622)
T ss_pred             HHHHHHHHHhchHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhcCChhhhhhccCCccCCCcccCeeEEEECCCCcE
Confidence            5555556777776654333332 3456788999999999999999999999999999999999999999999999885 9


Q ss_pred             EEeeEeeeeeCCCCC----CEEEEEEEeCCC-CCCCceEEEEEeCCC----------CCeEecccccccCCCCCceeeEE
Q 023057          178 IINGNKMWCTNGPVA----QTLVVYAKTDIK-AGSKGITAFIIEKGM----------PGFSTAQKLDKLGMRGSDTCELV  242 (288)
Q Consensus       178 ~l~G~k~~v~~~~~a----d~~lv~a~~~~~-~~~~~~~~~lv~~~~----------~gv~~~~~~~~~Gl~~~~~~~v~  242 (288)
                      +|||+|.|||++.++    ++++|+|+++++ ++++++++|+||++.          +|+++.+..+++|+++++++.+.
T Consensus       212 ~L~G~K~fIt~g~~~~~~n~~~lVlAr~~~~~~g~~GiSlFlVp~~~~~~~G~~~~~~gv~~~~~~~kmG~~gs~t~~l~  291 (622)
T PTZ00456        212 KITGTKIFISAGDHDLTENIVHIVLARLPNSLPTTKGLSLFLVPRHVVKPDGSLETAKNVKCIGLEKKMGIKGSSTCQLS  291 (622)
T ss_pred             EEeeEEEEecCCchhhccCcEEEEEEEecCCCCCCCceEEEEEeCCCCCcCCCccCCCCeeecCcccccCCCCCceEEEE
Confidence            999999999998763    678999998653 356789999999865          36777777899999999999999


Q ss_pred             eceeeeCCCCcccCCCccHHHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057          243 FENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       243 ~~~v~vp~~~~l~~~~~~~~~~~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      |+|+   .+++||.+++|+..+..+++.+|+.+++.++|+++++++
T Consensus       292 fd~~---~~~llG~~~~Gl~~~~~~mn~aRl~vaa~~lG~a~~Al~  334 (622)
T PTZ00456        292 FENS---VGYLIGEPNAGMKQMFTFMNTARVGTALEGVCHAELAFQ  334 (622)
T ss_pred             eeCh---hHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9984   578999999999999999999999999999999999874

>KOG0138 consensus Glutaryl-CoA dehydrogenase [Amino acid transport and metabolism]

Probab=100.00  E-value=2.7e-38  Score=264.95  Aligned_cols=259  Identities=28%  Similarity=0.493  Sum_probs=233.6

Q ss_pred             ccccCCCCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHH
Q 023057           21 HSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCI  100 (288)
Q Consensus        21 ~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~  100 (288)
                      ++.++--.-.+++|+. .+++++|+++++++.|...+..+.+.||+  ++..++..+|+++..+ +.||=.|.|...+..
T Consensus        45 ~qD~~~l~dqLT~dE~-air~~~Reycq~~l~Prvtea~r~e~F~~--~i~pemGsmGvlG~ti-kGYGCaG~S~vaygl  120 (432)
T KOG0138|consen   45 WQDPLVLEDQLTEDEI-AIRDTFREYCQERLMPRVTEANRNEVFDR--EIIPEMGSMGVLGPTI-KGYGCAGVSSVAYGL  120 (432)
T ss_pred             ccchhhhhhhcCHHHH-HHHHHHHHHHHHHhhhHHHHHhhhccCCh--hhhhhhhccccccCcc-cCcCCCchHHHHHHH
Confidence            4445555567899999 99999999999999999999999999999  9999999999999877 668888999999999


Q ss_pred             HHHHHHhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCe--EE
Q 023057          101 AMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YI  178 (288)
Q Consensus       101 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g--~~  178 (288)
                      +.+|+.|.|.+-...+.+|+.++...+..+|+++||++|||.+++|+.++|+++|||.+|||+.++.|+|+.++.+  |.
T Consensus       121 ~~rEveRVDs~yrs~~sVqsSL~m~~Iy~~GSE~QkqkYlPslA~g~~igcfgLTEPn~GSdpsgmeT~At~~e~~ktyk  200 (432)
T KOG0138|consen  121 LAREVERVDSGYRSAMSVQSSLVMGPIYAYGSEEQKQKYLPSLAKGKLIGCFGLTEPNHGSDPSGMETRATYDESNKTYK  200 (432)
T ss_pred             HHHHHHHhhhhchhhhhhhhhhhhhhHhhcCCHHHHhhhhhhhhcCceeeEEeccCCCCCCCcccccceeEEccCCceEE
Confidence            9999999998888778888889999999999999999999999999999999999999999999999999999888  99


Q ss_pred             EeeEeeeeeCCCCCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCC
Q 023057          179 INGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEG  258 (288)
Q Consensus       179 l~G~k~~v~~~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~  258 (288)
                      |||+|.|++|++.||+++|.||...+   ..+.-|+|.++.+|++......++++|...++.+-+|+|+||++++|....
T Consensus       201 lNGsKtWI~nsp~aDl~vvwAr~~t~---n~I~GFi~~k~~~GL~apkI~gK~sLRas~tG~Ilmd~V~VPeE~~LPg~~  277 (432)
T KOG0138|consen  201 LNGSKTWITNSPMADLFVVWARCETD---NKIRGFILEKGMRGLSAPKIEGKFSLRASATGMILMDGVEVPEENLLPGAS  277 (432)
T ss_pred             ECCeeeeecCCcccceEEEEEecccC---CceeeEEEecCCCCCcCCCcCCeeeeeecccCceeecCCcCChhhcCCCcc
Confidence            99999999999999999999998743   467789999999999987778899999999999999999999999995432


Q ss_pred             ccHHHHHHhhhHHHHHHHHHHHHHhhccc
Q 023057          259 KGVYVMMSGLDLERLVLAAGPLGIMQAPV  287 (288)
Q Consensus       259 ~~~~~~~~~~~~~r~~~aa~~~G~a~~al  287 (288)
                       ++.--...++.+|..++...+|++..++
T Consensus       278 -s~qgpf~cLnnaR~giAWg~lGase~c~  305 (432)
T KOG0138|consen  278 -SLQGPFGCLNNARYGIAWGALGASEFCL  305 (432)
T ss_pred             -ccCCchhhhhhhhhheeehhchhHHHHH
Confidence             4444456788999999999999988775

>PLN02636 acyl-coenzyme A oxidase

Probab=100.00  E-value=1.6e-36  Score=291.95  Aligned_cols=250  Identities=22%  Similarity=0.358  Sum_probs=219.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHhhc---CcccccccccCCCC-CcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHH
Q 023057           30 LLFDDTQLQFKESVGQFARENI---APRAANIDQSNSFP-QDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEI  105 (288)
Q Consensus        30 ~~s~~~~~~l~~~~~~~~~~~~---~~~~~~~d~~~~~~-~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l  105 (288)
                      .+++++. ++++++++|+++..   .+....+++.+.++ .  ++++.+++.|++++.+|++      +..++..+.|++
T Consensus        60 ~l~~~~~-~~r~~v~~~~~~~~~~~~~~~~~~~~~~e~~~~--~l~~~~~~~g~~~~~~~~~------~~~~~~~~~e~l  130 (686)
T PLN02636         60 YMRGKHR-DIQEKIYEFFNSRPDLQTPVEISKDEHRELCMR--QLTGLVREAGIRPMKYLVE------DPAKYFAITEAV  130 (686)
T ss_pred             hcCCcHH-HHHHHHHHHHHhCccccCCchhhHHHhhhhHHH--HHHHHHHhcCccccccccC------CHHHHHHHHHHH
Confidence            3566777 89999999987763   45555667677777 6  8999999999999999976      788899999999


Q ss_pred             HhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEe--CCeEEEe---
Q 023057          106 SRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIIN---  180 (288)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~--~~g~~l~---  180 (288)
                      ++.+++++..+..|..++...|..+|+++|+++|||++.+|+.++|+++|||++|||...++|+|+++  +|+|+||   
T Consensus       131 ~~~d~s~~~~~~vh~~l~~~~I~~~GTeeQk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtA~~d~~~defVLntP~  210 (686)
T PLN02636        131 GSVDMSLGIKLGVQYSLWGGSVINLGTKKHRDKYFDGIDNLDYPGCFAMTELHHGSNVQGLQTTATFDPLTDEFVINTPN  210 (686)
T ss_pred             HhhchhhHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCChhhhhhccCCCcccCcccCeeEEEEcCCCCeEEECCCC
Confidence            99999888778888767888899999999999999999999999999999999999999999999998  7889999   


Q ss_pred             --eEeeeeeCCCC-CCEEEEEEEeCCC------CCCCceEEEEEeCC-------CCCeEecccccccCCCCCceeeEEec
Q 023057          181 --GNKMWCTNGPV-AQTLVVYAKTDIK------AGSKGITAFIIEKG-------MPGFSTAQKLDKLGMRGSDTCELVFE  244 (288)
Q Consensus       181 --G~k~~v~~~~~-ad~~lv~a~~~~~------~~~~~~~~~lv~~~-------~~gv~~~~~~~~~Gl~~~~~~~v~~~  244 (288)
                        |+|+|++|+.. ||+++|+|++..+      +++.++++|+||.+       .|||++.+..+++|+++.+++.+.||
T Consensus       211 ~~g~K~wI~na~~~ad~~vV~Arl~~~~~~~~~~~~~Gi~~FlVp~r~~~~~~~~PGV~v~~~~~K~G~~g~dng~l~Fd  290 (686)
T PLN02636        211 DGAIKWWIGNAAVHGKFATVFARLKLPTHDSKGVSDMGVHAFIVPIRDMKTHQVLPGVEIRDCGHKVGLNGVDNGALRFR  290 (686)
T ss_pred             CCeEEEeecCCcccCCEEEEEEEecCCCCCccCCCCCCeeEEEEecCccccCCCCCCeEeccCCCccCCCCCcceEEEEe
Confidence              99999999965 9999999998631      12458999999987       59999988899999999999999999


Q ss_pred             eeeeCCCCcccC----------------CCccHHHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057          245 NCFVPNENVLGQ----------------EGKGVYVMMSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       245 ~v~vp~~~~l~~----------------~~~~~~~~~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      ||+||.+++|+.                .++|+......+..+|+.+++.++|++++|++
T Consensus       291 nVrVP~~nlLg~~g~v~~~G~y~~~~~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~  350 (686)
T PLN02636        291 SVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYGSVGVLKASNT  350 (686)
T ss_pred             eEEECHHHhccccccccCCCcccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999953                25688888899999999999999999999873

>PTZ00457 acyl-CoA dehydrogenase; Provisional

Probab=100.00  E-value=3.5e-35  Score=273.13  Aligned_cols=243  Identities=33%  Similarity=0.388  Sum_probs=206.0

Q ss_pred             ccccccccccccccccccccCCCC-CCCCHHHHHHHHHHH-HHHHHhhcCcccccccccCCCCCcHHHHHHHHhC-CCCC
Q 023057            5 LGARSLCASFFTKKQKHSAAFSST-SLLFDDTQLQFKESV-GQFARENIAPRAANIDQSNSFPQDVNLWKLMGNF-NLHG   81 (288)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~-Gl~~   81 (288)
                      ..+.|+..++|.+.-+.+..|++| ..+++|+. +..+.. ..+                        .+.++++ ||++
T Consensus        13 ~~~~sf~~~lF~g~~~~~~~~pyP~~~~~~~~~-~~~~~~~~~~------------------------~~~~~~l~Gl~g   67 (520)
T PTZ00457         13 VRHASYAAGLFNFKIVPEEMFPYPCRKLDGDEA-ENLQSLLEQI------------------------RSNDKILGNLYG   67 (520)
T ss_pred             ccCccHHHHhhCcccchhhcCCCCCCCCCHHHH-HHHHHHHHHH------------------------HhchHhcCCccC
Confidence            456788999999999999999888 55688777 333332 222                        1147799 9999


Q ss_pred             CCCCcCCCCCCCCHHHHHHHHHHHHhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCC
Q 023057           82 ITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGS  161 (288)
Q Consensus        82 ~~~pe~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~  161 (288)
                      +.+|++|||.|+++.+++.+.|++|+.+++.++.+..|..++...+..+|+++||++|||++++|+.+++++++| +.||
T Consensus        68 l~vPeeyGG~Gl~~~~~a~v~Eelgr~~~s~~l~~~~h~~l~~~~L~~~Gt~eqker~Lp~lasGe~i~A~AltE-~aGS  146 (520)
T PTZ00457         68 ARIATEYGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCTYLLSTVGSKELKGKYLTAMSDGTIMMGWATEE-GCGS  146 (520)
T ss_pred             CCCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCcEEEEEeCC-CCCC
Confidence            999999999999999999999999998877766555665456677888999999999999999999999999988 8999


Q ss_pred             CCCCCeEEEEEe-CCeEEEeeEeeeeeCCCCCCEEEEEEEeCC----CCC---CCceEEEEEeCCCCCeEecccccccCC
Q 023057          162 DVVGMKCKADRV-DGGYIINGNKMWCTNGPVAQTLVVYAKTDI----KAG---SKGITAFIIEKGMPGFSTAQKLDKLGM  233 (288)
Q Consensus       162 d~~~~~~~a~~~-~~g~~l~G~k~~v~~~~~ad~~lv~a~~~~----~~~---~~~~~~~lv~~~~~gv~~~~~~~~~Gl  233 (288)
                      |...+.|++++. +|+|+|||+|.|+ ++..||+++|+|++++    +.+   .+++++|+||++.|||++..       
T Consensus       147 D~a~i~TtA~~~~gg~wvLNG~K~~t-~g~~Ad~~lV~Art~~~~~~~~g~~~~~git~FlV~~dapGVtv~~-------  218 (520)
T PTZ00457        147 DISMNTTKASLTDDGSYVLTGQKRCE-FAASATHFLVLAKTLTQTAAEEGATEVSRNSFFICAKDAKGVSVNG-------  218 (520)
T ss_pred             ccccceeEEEEcCCCeEEEEEEEEEE-cCchhcEEEEEeecCCcccccccccCcCceEEEEEECCCCceEEec-------
Confidence            999999999986 4579999999976 8999999999999753    111   24689999999999999842       


Q ss_pred             CCCceeeEEeceeeeCCCCcccCCCccHHHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057          234 RGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       234 ~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~~~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                           ++|+|+||  |.+++||..+.|++.....++.+|+.+++.++|+++++++
T Consensus       219 -----~eV~FddV--P~~~vLG~~g~G~~~a~~~L~~~Rl~~aA~~vGia~~ale  266 (520)
T PTZ00457        219 -----DSVVFENT--PAADVVGVVGEGFKDAMITLFTEQYLYAASLLGIMKRVVQ  266 (520)
T ss_pred             -----CEEEECCC--CHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 59999997  9999999999999999999999999999999999999874

>PLN02312 acyl-CoA oxidase

Probab=100.00  E-value=1.6e-34  Score=277.59  Aligned_cols=227  Identities=21%  Similarity=0.295  Sum_probs=201.1

Q ss_pred             cccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhCCchhhHHHhhhhHHHHHHHhcCCHHHH
Q 023057           57 NIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQK  136 (288)
Q Consensus        57 ~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~  136 (288)
                      .+++...++.  +.|+++.+.|+.+..+|++  |.+ +....+.++|++++.+++++..+..|..++...|..+|+++|+
T Consensus        99 s~~~~~~~~~--~~~~~l~~~g~~~~~~pe~--g~~-~~~~~~~~~Eel~~~d~s~~~~~~vh~~l~~~~I~~~GTeeqk  173 (680)
T PLN02312         99 TMEQQREITM--KRILYLLERGVFRGWLTET--GPE-AELRKLALLEVIGIYDHSLAIKLGVHFFLWGGAIKFLGTKRHH  173 (680)
T ss_pred             CHHHHHHhHH--HHHHHHHHhhhcCCCCCCC--CCc-cHHHHHHHHHHHHHhcchHHHHHHhhhhhHHHHHHHhCCHHHH
Confidence            3455566677  8999999999999999995  333 6888899999999999988777788876778889999999999


Q ss_pred             HhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEe--CCeEEEe-----eEeeeeeCC-CCCCEEEEEEEeCCCCCCC
Q 023057          137 DKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIIN-----GNKMWCTNG-PVAQTLVVYAKTDIKAGSK  208 (288)
Q Consensus       137 ~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~--~~g~~l~-----G~k~~v~~~-~~ad~~lv~a~~~~~~~~~  208 (288)
                      ++|||.+.+|+.++|+++|||++|||..+++|+|+++  +|+|+||     |+|+|++|+ ..||+++|+|++..++++.
T Consensus       174 ~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtAt~D~~~defVLNtPt~~g~K~wig~a~~~A~~~vV~Arl~~~~~~~  253 (680)
T PLN02312        174 DKWLKDTEDYVVKGCFAMTELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHATHTIVFSQLHINGKNE  253 (680)
T ss_pred             HHHHHHHhCCCeeeEeeecCCCcCcchhcCeEEEEEeCCCCEEEECCCCCCeEEECccCCcccCCEEEEEEEECCCCCCC
Confidence            9999999999999999999999999999999999998  4779999     799999998 7999999999987554556


Q ss_pred             ceEEEEEe---CC---CCCeEecccccccCCCCCceeeEEeceeeeCCCCcccC----------------CCccHHHHHH
Q 023057          209 GITAFIIE---KG---MPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQ----------------EGKGVYVMMS  266 (288)
Q Consensus       209 ~~~~~lv~---~~---~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~----------------~~~~~~~~~~  266 (288)
                      ++.+|+||   .+   .|||++.+..+++|+++.+++.|.|+||+||++++|+.                ++.++..+..
T Consensus       254 Gv~~FlV~ird~~~~~~PGV~ig~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~~~V~~~G~y~~~~~~~~~gf~~~~~  333 (680)
T PLN02312        254 GVHAFIAQIRDQDGNICPNIRIADCGHKIGLNGVDNGRIWFDNLRIPRENLLNSVADVSPDGKYVSAIKDPDQRFGAFLA  333 (680)
T ss_pred             CeEEEEEeecCCCCCCCCCEEeccCCCcccccCCCceEEEEccEEECHHHhCCccceeCCCCceecCCCCccchHHHHHH
Confidence            89999998   23   79999999899999999999999999999999999983                5678888888


Q ss_pred             hhhHHHHHHHHHHHHHhhcccC
Q 023057          267 GLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       267 ~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      .+..+|+.+++.++|++++|++
T Consensus       334 ~l~~~R~~iaa~a~g~a~~Al~  355 (680)
T PLN02312        334 PLTSGRVTIAVSAIYSSKVGLA  355 (680)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999874

>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product

Probab=100.00  E-value=4.4e-34  Score=263.56  Aligned_cols=237  Identities=26%  Similarity=0.384  Sum_probs=199.7

Q ss_pred             HHHHHHHhhcCcccccccccCC------CCC-cHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhCCchhh
Q 023057           42 SVGQFARENIAPRAANIDQSNS------FPQ-DVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGL  114 (288)
Q Consensus        42 ~~~~~~~~~~~~~~~~~d~~~~------~~~-~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~~~~~~~~~  114 (288)
                      ...++++.+ .|...++|+.+.      +|+ ..++++.+.+.||+++ +|+++|+.|  ......+.+.++..+....+
T Consensus        36 ~~~~~a~~~-~P~~~~~d~~g~r~~~v~~~~~~~~~~~~~~~~G~~~~-~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~  111 (418)
T cd01154          36 ELARLADRN-PPVLEMWDRWGRRVDRVWVHPAWHALMRRLIEEGVINI-EDGPAGEGR--RHVHFAAGYLLSDAAAGLLC  111 (418)
T ss_pred             HHHHHhhcC-CCcccCCCCCCCcCCeEEeCHHHHHHHHHHHHcCCccC-CchhhCCCc--HHHHHHHHHHHHhcchhccC
Confidence            334454554 777788888877      662 2378899999999999 777777655  33444567777777766666


Q ss_pred             HHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCC----eeEEEEecCCCCCCCCCCCeEEEEEe-CCeEEEeeEeeeeeCC
Q 023057          115 SYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE----HVGALAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWCTNG  189 (288)
Q Consensus       115 ~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~----~~~~~a~te~~~g~d~~~~~~~a~~~-~~g~~l~G~k~~v~~~  189 (288)
                      ++.+|. .++..|..+|+++| ++||+++++|+    .++|+++|||++|||...+.|+|+++ +|+|+|||+|+|+|++
T Consensus       112 p~~~~~-~~~~~l~~~g~~~~-~~~l~~l~~g~~~~~~~~~~~~TEp~~GSD~~~~~T~A~~~~g~~~~LnG~K~f~s~a  189 (418)
T cd01154         112 PLTMTD-AAVYALRKYGPEEL-KQYLPGLLSDRYKTGLLGGTWMTEKQGGSDLGANETTAERSGGGVYRLNGHKWFASAP  189 (418)
T ss_pred             cHHHHH-HHHHHHHHhCcHHH-HHHHHHHhCCCcccchhheeeecCCCcccchhhCeEEEEECCCCcEEEEEEEEEecCc
Confidence            666666 57788999998886 56999999997    88999999999999999999999999 8999999999999999


Q ss_pred             CCCCEEEEEEEeCCC-CCCCceEEEEEeCCCC-----CeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHH
Q 023057          190 PVAQTLVVYAKTDIK-AGSKGITAFIIEKGMP-----GFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYV  263 (288)
Q Consensus       190 ~~ad~~lv~a~~~~~-~~~~~~~~~lv~~~~~-----gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~  263 (288)
                       .||+++|+|+++++ ++++++++|+||++.|     ||++.+.|+++|++++++++|.|+||.   ++++|.++.|+..
T Consensus       190 -~Ad~~lv~Art~~~~~~~~gls~flVp~~~~~~~~~Gv~i~~~~~~~G~r~~~~~ev~f~dv~---~~~lG~~g~G~~~  265 (418)
T cd01154         190 -LADAALVLARPEGAPAGARGLSLFLVPRLLEDGTRNGYRIRRLKDKLGTRSVATGEVEFDDAE---AYLIGDEGKGIYY  265 (418)
T ss_pred             -ccCEEEEEEECCCCCCCCCcEEEEEEeccCCCCCCCCeEecccccccCCCCCCeEEEEecCcC---ccccCCCCccHHH
Confidence             99999999998653 3456899999999885     999999999999999999999999984   7899999999999


Q ss_pred             HHHhhhHHHHHHHHHHHHHhhcccC
Q 023057          264 MMSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       264 ~~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      +...++..|+..++.++|+++++++
T Consensus       266 ~~~~l~~~R~~~aa~~~G~a~~al~  290 (418)
T cd01154         266 ILEMLNISRLDNAVAALGIMRRALS  290 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998874

AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.

>cd01159 NcnH Naphthocyclinone hydroxylase

Probab=100.00  E-value=7.3e-34  Score=258.57  Aligned_cols=227  Identities=20%  Similarity=0.300  Sum_probs=184.5

Q ss_pred             HHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhCCchhhHHHhhhhH
Q 023057           43 VGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNL  122 (288)
Q Consensus        43 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~  122 (288)
                      ++++ .+.+.+.+.++|+.+.+|.  +.|+.|++.||+++.+|++|||.|+++.+.+.+.|++++.|+++++....+. .
T Consensus         3 ~~~~-~~~~~~~a~~~d~~~~~p~--~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~s~a~~~~~~~-~   78 (370)
T cd01159           3 AEDL-APLIRERAPEAERARRLPD--EVVRALREIGFFRMFVPKRYGGLEGDFAEFAEAIATLAEACGSAAWVASIVA-T   78 (370)
T ss_pred             HHHH-HHHHHHhHHHHHHcCCCCH--HHHHHHHHCChHhhCCchhcCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHH-H
Confidence            3444 3346677788899999999  9999999999999999999999999999999999999999999987665554 4


Q ss_pred             HHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeeeeeCCCCCCEEEEEEEeC
Q 023057          123 CINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD  202 (288)
Q Consensus       123 ~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v~~~~~ad~~lv~a~~~  202 (288)
                      ....+..+++++|++.|++.. .+  .++..          ..+.++|++++|||+|||+|.|+|++..+|+++|.++++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~-~~--~~~g~----------~~~~t~A~~~~~gy~lnG~K~~it~~~~ad~~~v~a~~~  145 (370)
T cd01159          79 HSRMLAAFPPEAQEEVWGDGP-DT--LLAGS----------YAPGGRAERVDGGYRVSGTWPFASGCDHADWILVGAIVE  145 (370)
T ss_pred             HHHHHHhCCHHHHHHHhCCCC-Cc--eEEee----------ecCCceeEEeCCeEEEeccccCccCCCcCceeEeeeECC
Confidence            556677789999998887642 11  11111          223568899999999999999999999999999999975


Q ss_pred             CCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCC------ccHH---HHHHhhhHHHH
Q 023057          203 IKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEG------KGVY---VMMSGLDLERL  273 (288)
Q Consensus       203 ~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~------~~~~---~~~~~~~~~r~  273 (288)
                      ++++..++++|+||++  ||++.+.|+++|+++++++.|+|+||+||++++|+..+      .+..   +.......+++
T Consensus       146 ~~~~~~~~~~~lV~~~--Gv~~~~~~~~~G~r~~~s~~v~f~~v~Vp~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~  223 (370)
T cd01159         146 DDDGGPLPRAFVVPRA--EYEIVDTWHVVGLRGTGSNTVVVDDVFVPEHRTLTAGDMMAGDGPGGSTPVYRMPLRQVFPL  223 (370)
T ss_pred             CCCCCCcceEEEEEhH--HCEEecccccccccccCCCcEEEcceEcCccceecccccccCCCCCCCCccccCchHHHHHH
Confidence            4434557899999987  89998889999999999999999999999999997532      2211   22345667899


Q ss_pred             HHHHHHHHHhhcccC
Q 023057          274 VLAAGPLGIMQAPVR  288 (288)
Q Consensus       274 ~~aa~~~G~a~~al~  288 (288)
                      .+++.++|+++++++
T Consensus       224 ~~aa~~lG~a~~~l~  238 (370)
T cd01159         224 SFAAVSLGAAEGALA  238 (370)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999874

Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.

>cd00567 ACAD Acyl-CoA dehydrogenase

Probab=100.00  E-value=1.3e-31  Score=239.53  Aligned_cols=208  Identities=39%  Similarity=0.731  Sum_probs=183.9

Q ss_pred             HHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhCCchh
Q 023057           34 DTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVG  113 (288)
Q Consensus        34 ~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~~~~~~~~  113 (288)
                      ++. ++.+.+++|+.+.+.+.....++   ++.  ..|+.++++||+                                 
T Consensus         2 ~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~g~~---------------------------------   42 (327)
T cd00567           2 EQR-ELRDSAREFAAEELEPYARERRE---TPE--EPWELLAELGLL---------------------------------   42 (327)
T ss_pred             hHH-HHHHHHHHHHHHhccccHHhHHh---hCC--CCHHHHHHHHHH---------------------------------
Confidence            566 89999999999998887764443   445  568888888887                                 


Q ss_pred             hHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeeeeeCCCCCC
Q 023057          114 LSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQ  193 (288)
Q Consensus       114 ~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v~~~~~ad  193 (288)
                              ++...|..+|+++|+++||+.+.+|+.+++++++||.+|++...+.++++++++||+|||+|.|++++..||
T Consensus        43 --------~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~sE~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad  114 (327)
T cd00567          43 --------LGAALLLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTARKDGDGYVLNGRKIFISNGGDAD  114 (327)
T ss_pred             --------hchHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCchhhCEeEEEEeCCEEEEEEEEEEecCCccCC
Confidence                    233467778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEeCCCC-CCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHHHHHhhhHHH
Q 023057          194 TLVVYAKTDIKA-GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLER  272 (288)
Q Consensus       194 ~~lv~a~~~~~~-~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~~~~~~~~~r  272 (288)
                      +++|.++.+.++ +..++.+|+||.+.||+++.+.|+++|+++++++.++|+||+||++++++..+.++......+..++
T Consensus       115 ~~lv~a~~~~~~~~~~~~~~~lvp~~~~Gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~  194 (327)
T cd00567         115 LFIVLARTDEEGPGHRGISAFLVPADTPGVTVGRIWDKMGMRGSGTGELVFDDVRVPEDNLLGEEGGGFELAMKGLNVGR  194 (327)
T ss_pred             EEEEEEEeCCCCCCCCceEEEEEeCCCCCeEeccccccccCCCCceEEEEECCEEecHHHcCCCCCchHHHHHHHHHHHH
Confidence            999999876432 3356789999999999999999999999999999999999999999999988888878888999999


Q ss_pred             HHHHHHHHHHhhcccC
Q 023057          273 LVLAAGPLGIMQAPVR  288 (288)
Q Consensus       273 ~~~aa~~~G~a~~al~  288 (288)
                      +..++.++|+++++++
T Consensus       195 ~~~aa~~~G~a~~al~  210 (327)
T cd00567         195 LLLAAVALGAARAALD  210 (327)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999874

Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob

>KOG1469 consensus Predicted acyl-CoA dehydrogenase [General function prediction only]

Probab=99.97  E-value=8.1e-32  Score=222.94  Aligned_cols=219  Identities=26%  Similarity=0.384  Sum_probs=189.5

Q ss_pred             HHHHHHhCCCCCCCCCcCC--CCCCCCHHHHHHHHHHHHhhC-CchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcC
Q 023057           70 LWKLMGNFNLHGITAPQEY--GGLGLGYLYHCIAMEEISRAS-GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISG  146 (288)
Q Consensus        70 ~~~~l~~~Gl~~~~~pe~~--GG~g~~~~~~~~v~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g  146 (288)
                      +-+..+..|++++++|...  -|.|++.++++.+.|..|+.. ++-.+......+.....|.+||+++|+.+||.++++|
T Consensus        32 LKE~aK~eGlWNLFlp~~~qkyg~GLtnveYa~icElmGrs~~APeVfNC~APDTGNMEvl~rYGseeQks~WL~PLLeG  111 (392)
T KOG1469|consen   32 LKEMAKVEGLWNLFLPAVSQKYGAGLTNVEYAHICELMGRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKSQWLIPLLEG  111 (392)
T ss_pred             HHHHHHhcchHHhhhHHHHHhhccCccchhHHHHHHHhccccccchhccCCCCCCCCeeehhhhCCHHHHhhHhHHHhcC
Confidence            3344467999999999753  467899999999999999964 4444444455545667899999999999999999999


Q ss_pred             CeeEEEEecCCC-CCCCCCCCeEEEEEeCCeEEEeeEeeeeeCC--CCCCEEEEEEEeCCC--CCCCceEEEEEeCCCCC
Q 023057          147 EHVGALAMSEPN-AGSDVVGMKCKADRVDGGYIINGNKMWCTNG--PVAQTLVVYAKTDIK--AGSKGITAFIIEKGMPG  221 (288)
Q Consensus       147 ~~~~~~a~te~~-~g~d~~~~~~~a~~~~~g~~l~G~k~~v~~~--~~ad~~lv~a~~~~~--~~~~~~~~~lv~~~~~g  221 (288)
                      +...|+++|||+ ..||..+++++.++++|.|+|||+|||+||+  +.|...+++.+++..  +.++..+++|||.+.||
T Consensus       112 ~irScFaMTEP~VASSDATNIe~SI~r~~~~YvINg~KWw~sga~~PkCrv~i~mGkt~~~~~~rhkQqSmiLVpM~TpG  191 (392)
T KOG1469|consen  112 NIRSCFAMTEPDVASSDATNIECSIRRDGDSYVINGKKWWISGAGDPKCRIAIFMGKTDNTSASRHKQQSMILVPMNTPG  191 (392)
T ss_pred             CceeeEeecCCcccccccccceEEEEEcCCEEEEecceeeecCCCCCceEEEEEecccCCCccchhhcccEEEEecCCCC
Confidence            999999999999 6689999999999999999999999999997  667888999998764  34678899999999999


Q ss_pred             eEecccccccCCCCCc--eeeEEeceeeeCCCCcccCCCccHHHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057          222 FSTAQKLDKLGMRGSD--TCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       222 v~~~~~~~~~Gl~~~~--~~~v~~~~v~vp~~~~l~~~~~~~~~~~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      |.|.++....|....+  ..+++|++|+||+.+++-.++.|+.+.+.-+..+|++.|.-.+|.++++++
T Consensus       192 vkiiRpltVfG~~DapgGH~Ei~F~~VrVP~~NmlLGeGrGFEIaQGRLGPGRiHHcMRliG~aERal~  260 (392)
T KOG1469|consen  192 VKIIRPLTVFGYTDAPGGHFEIHFENVRVPATNMLLGEGRGFEIAQGRLGPGRIHHCMRLIGLAERALQ  260 (392)
T ss_pred             eeEeeeeeeeccccCCCCcceEEEEEEEeeccceeecCCCcceeeccccCCcHHHHHHHHhhHHHHHHH
Confidence            9999998888886654  678999999999999988888999999999999999999999999999874

>cd01150 AXO Peroxisomal acyl-CoA oxidase

Probab=99.96  E-value=2.7e-29  Score=240.44  Aligned_cols=195  Identities=24%  Similarity=0.309  Sum_probs=174.9

Q ss_pred             CHHHHHHHHHHHHhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEe
Q 023057           94 GYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV  173 (288)
Q Consensus        94 ~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~  173 (288)
                      ++.+...+.|++++.+++++..+..|..++...|..+|+++|+++||+.+.+|+.++|+++|||++|||...++|+|+.+
T Consensus        80 ~~~~~~~~~e~l~~~d~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~~~~g~~ig~~a~TE~ghGSdv~~leTtAt~d  159 (610)
T cd01150          80 DPEKMLALTNSLGGYDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGLETTATYD  159 (610)
T ss_pred             CHHHHHHHHHHHhccCccccceeeehHHHHHHHHHHhCCHHHHHHHHHHHhccChheeeeccccCcCcCcccceeEEEEC
Confidence            67788889999999998887777788767788899999999999999999999999999999999999999999999998


Q ss_pred             C--CeEEEe-----eEeeeeeCCC-CCCEEEEEEEeCCCCCCCceEEEEEeCC-------CCCeEecccccccCCCCCce
Q 023057          174 D--GGYIIN-----GNKMWCTNGP-VAQTLVVYAKTDIKAGSKGITAFIIEKG-------MPGFSTAQKLDKLGMRGSDT  238 (288)
Q Consensus       174 ~--~g~~l~-----G~k~~v~~~~-~ad~~lv~a~~~~~~~~~~~~~~lv~~~-------~~gv~~~~~~~~~Gl~~~~~  238 (288)
                      +  ++|+||     |+|+|++|+. .|++++|+|+...+++..++.+|+||..       .|||++.+.++++|+++.++
T Consensus       160 ~~t~efvLntp~~~g~K~wi~~~~~~a~~~vV~Arl~~~g~~~Gv~~FlVp~rd~~~~~~~pGV~i~~~~~k~G~~g~dn  239 (610)
T cd01150         160 PLTQEFVINTPDFTATKWWPGNLGKTATHAVVFAQLITPGKNHGLHAFIVPIRDPKTHQPLPGVTVGDIGPKMGLNGVDN  239 (610)
T ss_pred             CCCCeEEECCCCCCceEECccCcccCCCEEEEEEEeccCCCCCCeEEEEEeccccccCCCCCCeEEeecccccCCCCCCe
Confidence            8  889999     9999999874 5999999999865444568999999963       39999988899999999999


Q ss_pred             eeEEeceeeeCCCCcccC----------------CCccHHHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057          239 CELVFENCFVPNENVLGQ----------------EGKGVYVMMSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       239 ~~v~~~~v~vp~~~~l~~----------------~~~~~~~~~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      +.+.|+||+||.+++|+.                ++.++..+...+..+|+.+++.++|++++|++
T Consensus       240 g~l~Fd~vrVP~~nlL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~~~~gRl~ia~~a~g~~~~al~  305 (610)
T cd01150         240 GFLQFRNVRIPRENLLNRFGDVSPDGTYVSPFKDPNKRYGAMLGTRSGGRVGLIYDAAMSLKKAAT  305 (610)
T ss_pred             EEEEEeeeEecHHHhcccccccCCCCceecCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            999999999999999986                56678888888999999999999999998863

Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.

>PRK11561 isovaleryl CoA dehydrogenase; Provisional

Probab=99.96  E-value=1.6e-28  Score=229.97  Aligned_cols=209  Identities=22%  Similarity=0.362  Sum_probs=169.7

Q ss_pred             cHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcC
Q 023057           67 DVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISG  146 (288)
Q Consensus        67 ~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g  146 (288)
                      .+++++.+.+.||.++..++++| .+. ....+......+...+...+++.++  .++..+..+++++|+++|+|++++|
T Consensus        88 ~~~~~~~~~~~g~~~~~~~~~~~-~~~-~~~~~~~~~l~~~~~~g~~cp~~mT--~~a~~~l~~~~~e~~~~~lp~l~sg  163 (538)
T PRK11561         88 WHLLMQGLCANRVHNLAWEEDAR-SGA-FVARAARFMLHAQVEAGTLCPITMT--FAATPLLLQMLPAPFQDWLTPLLSD  163 (538)
T ss_pred             HHHHHHHHHHcCCccCCCCCccC-chH-HHHHHHHHHHHhhhhHHhhchHHHH--HHHHHHHHhcCHHHHHHHHHHHhCC
Confidence            34566777789999999987765 221 2222222223333444443443343  4445566678899999999999999


Q ss_pred             C-------------eeEEEEecCCCCCCCCCCCeEEEEEe-CCeEEEeeEeeeeeCCCCCCEEEEEEEeCCCCCCCceEE
Q 023057          147 E-------------HVGALAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITA  212 (288)
Q Consensus       147 ~-------------~~~~~a~te~~~g~d~~~~~~~a~~~-~~g~~l~G~k~~v~~~~~ad~~lv~a~~~~~~~~~~~~~  212 (288)
                      +             .++++++|||++|||...+.|+|++. +|+|+|||+|+|+| +..||+++|+|+++     +++++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~a~TEp~~GSDv~~~~T~A~~~~gg~w~LnG~K~fiS-a~~AD~~lVlArt~-----~Gls~  237 (538)
T PRK11561        164 RYDSHLLPGGQKRGLLIGMGMTEKQGGSDVLSNTTRAERLADGSYRLVGHKWFFS-VPQSDAHLVLAQAK-----GGLSC  237 (538)
T ss_pred             CcccccccchhhhhheeEEEecCCCCCCchhhCeeEEEECCCCeEEEEEEEEEEE-chhhCEEEEEEEEC-----CceEE
Confidence            7             45699999999999999999999994 67799999999999 68999999999986     37999


Q ss_pred             EEEeCCCC-----CeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHHHHHhhhHHHHHHHHHHHHHhhccc
Q 023057          213 FIIEKGMP-----GFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQAPV  287 (288)
Q Consensus       213 ~lv~~~~~-----gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~~~~~~~~~r~~~aa~~~G~a~~al  287 (288)
                      |+||++.|     ||++.+.++++|++++++++|+|+||.   +++||.+++|+..+..+++..|+..++.++|++++|+
T Consensus       238 FlVp~~~p~g~~nGv~i~rl~~klG~r~~~t~ev~f~dv~---~~llG~~g~G~~~i~~~l~~~Rl~~a~~a~G~a~~Al  314 (538)
T PRK11561        238 FFVPRFLPDGQRNAIRLERLKDKLGNRSNASSEVEFQDAI---GWLLGEEGEGIRLILKMGGMTRFDCALGSHGLMRRAF  314 (538)
T ss_pred             EEEECCCCCCCCCceEEecccccccCCCCceeEEEECCHH---HHHCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988     799988899999999999999999993   7899999999999999999999999999999999987


Q ss_pred             C
Q 023057          288 R  288 (288)
Q Consensus       288 ~  288 (288)
                      +
T Consensus       315 ~  315 (538)
T PRK11561        315 S  315 (538)
T ss_pred             H
Confidence            4

>PTZ00460 acyl-CoA dehydrogenase; Provisional

Probab=99.95  E-value=1.3e-27  Score=228.98  Aligned_cols=179  Identities=22%  Similarity=0.336  Sum_probs=154.4

Q ss_pred             CchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEe--CCeEEEe-----eE
Q 023057          110 GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIIN-----GN  182 (288)
Q Consensus       110 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~--~~g~~l~-----G~  182 (288)
                      ++...++..|..++...|..+|+++|+++|||.+.+|+.++|+++|||++|||..+++|+|+.+  +|+|+||     |+
T Consensus        89 ~~~~~~~~vh~~~~~~~I~~~GT~eQk~~~Lp~~~~ge~ig~~A~TEpghGSdv~~leTtAt~d~~~defvLntPt~~g~  168 (646)
T PTZ00460         89 PQGTFISTVHFAMVIPAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTNEFVIHTPSVEAV  168 (646)
T ss_pred             cCCCceEEeeHhhHHHHHHHhCCHHHHHHHHHHHhCCChheeeeecCCCccCCcccceEEEEEcCCCCEEEECCCCCCeE
Confidence            3443445667656667788899999999999999999999999999999999999999999985  6789998     99


Q ss_pred             eeeeeC-CCCCCEEEEEEEeCCCCCCCceEEEEEeCC-------CCCeEecccccccCCCCCceeeEEeceeeeCCCCcc
Q 023057          183 KMWCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIEKG-------MPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVL  254 (288)
Q Consensus       183 k~~v~~-~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~-------~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l  254 (288)
                      |+|++| +..||+++|+|++..++++.++.+|+||..       .|||++.+..+++|+++.+++.+.|+||+||++++|
T Consensus       169 K~wi~~~g~~A~~~vV~Arl~~~~~~~Gi~~FlV~ird~~~~~~~pGV~vg~~~~k~G~~~~dng~l~Fd~VrVP~~nlL  248 (646)
T PTZ00460        169 KFWPGELGFLCNFALVYAKLIVNGKNKGVHPFMVRIRDKETHKPLQGVEVGDIGPKMGYAVKDNGFLSFDHYRIPLDSLL  248 (646)
T ss_pred             EEccCCCCCCCCEEEEEEEECcCCCCCceEEEEEeccccCCCCCCCCeEEeccccccCcCCCCceEEEeceEEECHHHhC
Confidence            999997 689999999999875445568999999932       499999888999999999999999999999999999


Q ss_pred             cC------CCc----c-HHHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057          255 GQ------EGK----G-VYVMMSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       255 ~~------~~~----~-~~~~~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      +.      .+.    + +......+...|+.+++.++|++++|++
T Consensus       249 g~~~~v~~~G~~~~~g~~~~~~~~l~~~R~~iaa~~~g~a~~Al~  293 (646)
T PTZ00460        249 ARYIKVSEDGQVERQGNPKVSYASMMYMRNLIIDQYPRFAAQALT  293 (646)
T ss_pred             CcccccCCCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            85      332    3 5666777889999999999999998874

>PLN02443 acyl-coenzyme A oxidase

Probab=99.94  E-value=7.9e-26  Score=217.14  Aligned_cols=173  Identities=24%  Similarity=0.360  Sum_probs=147.8

Q ss_pred             HHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEe--CCeEEEe-----eEeeeeeC
Q 023057          116 YGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIIN-----GNKMWCTN  188 (288)
Q Consensus       116 ~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~--~~g~~l~-----G~k~~v~~  188 (288)
                      +..|..++...|..+|+++|+++|||.+.+|+.++|+++|||++|||..+++|+|+.+  +|+|+||     |+|+|++|
T Consensus        99 ~~~~~~~f~~~I~~~GT~eQk~~~L~~~~~g~iig~fA~TE~ghGSdv~~leTtAt~d~~~~efvIntP~~~g~K~wig~  178 (664)
T PLN02443         99 TDLHWGMFVPAIKGQGTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSKWWPGG  178 (664)
T ss_pred             eeehHhHHHHHHHHhCCHHHHHHHHHHHhCCChheEEEecCCCcccchhhCeEEEEEeCCCCEEEECCCCCCEEEEeecC
Confidence            4455546667788899999999999999999999999999999999999999999988  6789998     99999999


Q ss_pred             C-CCCCEEEEEEEeCCCCCCCceEEEEEeCC-------CCCeEecccccccC---CCCCceeeEEeceeeeCCCCcccCC
Q 023057          189 G-PVAQTLVVYAKTDIKAGSKGITAFIIEKG-------MPGFSTAQKLDKLG---MRGSDTCELVFENCFVPNENVLGQE  257 (288)
Q Consensus       189 ~-~~ad~~lv~a~~~~~~~~~~~~~~lv~~~-------~~gv~~~~~~~~~G---l~~~~~~~v~~~~v~vp~~~~l~~~  257 (288)
                      + ..|++++|+|+...++++.++.+|+||.+       .|||++.+..+++|   +++.+++.|.|+||+||.+++|+..
T Consensus       179 ~~~~A~~~vV~Arl~~~~~~~Gv~~FlVp~r~~~~~~~~PGV~vgd~g~K~G~~~~~~~dng~l~Fd~VrVP~~nlLg~~  258 (664)
T PLN02443        179 LGKVSTHAVVYARLITNGKDHGIHGFIVQLRSLDDHSPLPGVTVGDIGMKFGNGAYNTMDNGFLRFDHVRIPRDQMLMRL  258 (664)
T ss_pred             CcccCCEEEEEEEECCCCCCCCeEEEEEecCCcCcCCCCCCeEEeccccccCcccCCCCcceEEEeCcEEECHHHcCCcc
Confidence            6 78999999999865445568999999975       69999988899999   5568899999999999999999753


Q ss_pred             ------CccH------HHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057          258 ------GKGV------YVMMSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       258 ------~~~~------~~~~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                            +...      ......+..+|+.+++.++|++++|++
T Consensus       259 ~~v~~~G~~~~~~~~~~~~~~~l~~~R~~i~a~a~g~~~~Al~  301 (664)
T PLN02443        259 SKVTREGKYVQSDVPRQLVYGTMVYVRQTIVADASTALSRAVC  301 (664)
T ss_pred             cccCCCCceecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  2211      234466778899999999999998863

>KOG0135 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.82  E-value=7.9e-20  Score=164.93  Aligned_cols=214  Identities=24%  Similarity=0.332  Sum_probs=178.7

Q ss_pred             HHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCe
Q 023057           69 NLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEH  148 (288)
Q Consensus        69 ~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~  148 (288)
                      ..|..+.+.|.+.-..-+..-   -+......+.|.+|-+|.|++.-++.|..+....+..+|++..++ |+..+-+.+.
T Consensus        81 ~r~~~l~~~gv~~~~~~~~~~---~~~~k~~al~E~lg~yd~sls~K~~lh~~lfg~AV~~~GT~rH~~-yi~~~~n~ev  156 (661)
T KOG0135|consen   81 KRIKRLVELGVFKFWLVEDGP---EAELKKFALTEALGIYDQSLSAKLGLHFLLFGNAVKSMGTKRHHD-YIQKTENYEV  156 (661)
T ss_pred             HHHHHHHHhccCcceeecCch---HHHHHHHHHHHHHhhcCcchhhhhhhhhhhhhHHHHhhccHHHHH-HHhhhhccee
Confidence            456777777766544433311   134567889999999999999999999989999999999998877 9999999999


Q ss_pred             eEEEEecCCCCCCCCCCCeEEEEEe--CCeEEEe-----eEeeeeeC-CCCCCEEEEEEEeCCCCCCCceEEEEEeCCC-
Q 023057          149 VGALAMSEPNAGSDVVGMKCKADRV--DGGYIIN-----GNKMWCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIEKGM-  219 (288)
Q Consensus       149 ~~~~a~te~~~g~d~~~~~~~a~~~--~~g~~l~-----G~k~~v~~-~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~-  219 (288)
                      .+|+++||.++||+..+++|+|+.+  .+.++||     -.|.|+.| +..|++.+|+|+..-++...++..|+|+..+ 
T Consensus       157 ~gcfamTEl~HGSNt~~I~TtatyDP~t~EfVinTP~~~A~K~WiGn~a~~athavvfa~L~~~g~n~G~H~FiiqIRdp  236 (661)
T KOG0135|consen  157 KGCFAMTELGHGSNTKGIQTTATYDPTTEEFVINTPDFSAIKCWIGNAAKHATHAVVFAQLHVPGQNHGLHGFIIQIRDP  236 (661)
T ss_pred             eeeEEEeeecCCccccceeeeeeecCCCCeeEecCCcHHHHHHHhccccccceEEEEEEEeeecCccCceeeEEEEeecc
Confidence            9999999999999999999999988  5779998     67999988 6889999999998665556788899999644 


Q ss_pred             ------CCeEecccccccCCCCCceeeEEeceeeeCCCCcccC----------------CCccHHHHHHhhhHHHHHHHH
Q 023057          220 ------PGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQ----------------EGKGVYVMMSGLDLERLVLAA  277 (288)
Q Consensus       220 ------~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~----------------~~~~~~~~~~~~~~~r~~~aa  277 (288)
                            |||.|.+.-.++|+.|.+++.+.|++|+||.+++|..                +++.+......+..+|+.++.
T Consensus       237 kT~~t~PgV~igD~G~K~GlnGVDNG~l~F~nvRIPRenLLNr~gDVtpDG~YvSs~k~~~qrfgA~L~~Ls~GRvgIa~  316 (661)
T KOG0135|consen  237 KTLQTLPGVRIGDCGHKIGLNGVDNGFLWFDNVRIPRENLLNRFGDVTPDGKYVSSFKDPSQRFGASLGSLSSGRVGIAS  316 (661)
T ss_pred             cccCCCCCceecccccccccccccCceEEEecccCchHHHhhhccCcCCCCeeeccCCChhhhhchhhcccccchhHHHH
Confidence                  7999999999999999999999999999999999843                223344555667789999999


Q ss_pred             HHHHHhhcc
Q 023057          278 GPLGIMQAP  286 (288)
Q Consensus       278 ~~~G~a~~a  286 (288)
                      .++|.+.-+
T Consensus       317 ~ai~~lkla  325 (661)
T KOG0135|consen  317 SAIGALKLA  325 (661)
T ss_pred             HHHHHHHHH
Confidence            999887644

>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1

Probab=99.82  E-value=2.2e-20  Score=141.30  Aligned_cols=113  Identities=41%  Similarity=0.775  Sum_probs=104.9

Q ss_pred             CHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhCCc
Q 023057           32 FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGS  111 (288)
Q Consensus        32 s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~~~~~~  111 (288)
                      |++++ +|++.+++|+++.+.|...++|+++.+|+  +.|+++++.||+++.+|+++||.++++.+.+.+.+++++++++
T Consensus         1 t~~~~-~l~~~~~~~~~~~~~~~~~~~d~~~~~p~--~~~~~l~~~G~~~~~~p~~~GG~~~~~~~~~~~~e~l~~~~~~   77 (113)
T PF02771_consen    1 TEEQQ-ALREEAREFAEEEIAPHAAEWDEDGRFPR--EVWRALGEAGLLGLAVPEEYGGLGLSPLELAIVLEELARADAS   77 (113)
T ss_dssp             SHHHH-HHHHHHHHHHHHHTHHHHHHHHHHTSCHH--HHHHHHHHTTTTSTTSCGGGTSEB-THHHHHHHHHHHHHHTHH
T ss_pred             CHHHH-HHHHHHHHHHHHHchHHHHHHHHhCCCCH--HHHHHHHHHHHhhhhccccccCcchhhhhHHHHHHhhhhhccc
Confidence            57888 99999999999999998888888889999  9999999999999999999999999999999999999999999


Q ss_pred             hhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCC
Q 023057          112 VGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE  147 (288)
Q Consensus       112 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~  147 (288)
                      +++.+.+|..+++..|..+|+++|+++|||++++|+
T Consensus        78 ~~~~~~~~~~l~~~~i~~~gs~eq~~~~lp~~~~Ge  113 (113)
T PF02771_consen   78 LAFALGVHQSLGAPPIAKFGSEEQKEKWLPRLASGE  113 (113)
T ss_dssp             HHHHHHHHHHCHHHHHHHHSHHHHHHHHHHHHHTTS
T ss_pred             ccchhhhhhHHHHHHHHHHCCHHHHHHHhHHHhCCC
Confidence            998888887567789999999999999999999986

3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....

>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component

Probab=99.58  E-value=2.4e-14  Score=133.37  Aligned_cols=148  Identities=21%  Similarity=0.287  Sum_probs=110.3

Q ss_pred             HHHHhhchhHhcCCeeEEEEecCCCCC-C-------CCCCCeEEEEEeCCeEEEeeEeeeeeCCCCCCEEEEEEEeCCCC
Q 023057          134 AQKDKYLPKLISGEHVGALAMSEPNAG-S-------DVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA  205 (288)
Q Consensus       134 ~~~~~~l~~~~~g~~~~~~a~te~~~g-~-------d~~~~~~~a~~~~~g~~l~G~k~~v~~~~~ad~~lv~a~~~~~~  205 (288)
                      +...+|+..+.+.++..+.+++.|..- |       |+...--..++++|||+|||.|.|+|++ .||+++|++++...+
T Consensus       127 ~n~~~y~~~~~~~dl~~~~a~~dp~~dRs~~~~~~~d~~~~~~Vve~~~dGiVV~GaK~~~T~~-~ad~~~V~~~~~~~~  205 (477)
T TIGR02309       127 ENVRNYYEYLRDNDLALTHALTNPQVNRAKPPSEQPDPYIALGVVEQTDKGVIVRGARMTATFP-IADEILIFPSTVLKA  205 (477)
T ss_pred             HHHHHHHHHHHHhCceeeccccCCCCCCCCChhhcCCCCcceeEEEEcCCCEEEeCHHHhhhhc-ccceEEEeccCCCCC
Confidence            567889999999999999999998743 2       1111113345678999999999999997 999999998875432


Q ss_pred             CC-Cc--eEEEEEeCCCCCeEecccccccCCCCC-----------ceeeEEeceeeeCCCCc--ccCC---CccHHHHHH
Q 023057          206 GS-KG--ITAFIIEKGMPGFSTAQKLDKLGMRGS-----------DTCELVFENCFVPNENV--LGQE---GKGVYVMMS  266 (288)
Q Consensus       206 ~~-~~--~~~~lv~~~~~gv~~~~~~~~~Gl~~~-----------~~~~v~~~~v~vp~~~~--l~~~---~~~~~~~~~  266 (288)
                      ++ ++  .++|+||.+.||+++....+++|.++.           ..+.|.||||+||++++  +|..   +.++.... 
T Consensus       206 ~~~~~~ya~~F~VP~dtpGl~~i~r~~~~~~~~~~D~plssrfde~da~vvFDdV~VPwe~VF~~g~~e~a~~~f~~~~-  284 (477)
T TIGR02309       206 GAEKDPYALAFAIPTNTPGLHFVCREALDGGDSPFDHPLSSRFEEMDALVIFDDVLVPWERIFILGDVELCNNAYAATG-  284 (477)
T ss_pred             ccCCCCeEEEEEeeCCCCceEEEeCCccCCCCCcccCccccccCCCeEEEEeCceeccHHHhhhcCCHHHHHHHHHHHH-
Confidence            32 22  689999999999998777778887765           56899999999999999  7765   44443221 


Q ss_pred             hhhHHHHHHHHHHHHHhhccc
Q 023057          267 GLDLERLVLAAGPLGIMQAPV  287 (288)
Q Consensus       267 ~~~~~r~~~aa~~~G~a~~al  287 (288)
                          .++..+..++|.+.+++
T Consensus       285 ----~~~~~~~~~~g~~~~~l  301 (477)
T TIGR02309       285 ----AVNHMAHQVVALKIAKT  301 (477)
T ss_pred             ----HHHHHHHHHHHHHHHHH
Confidence                23555666666666554

This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).

>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1

Probab=99.57  E-value=8.5e-15  Score=94.58  Aligned_cols=52  Identities=42%  Similarity=0.763  Sum_probs=47.1

Q ss_pred             EEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeeeeeCCCCCCEEEEEEEeC
Q 023057          151 ALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD  202 (288)
Q Consensus       151 ~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v~~~~~ad~~lv~a~~~  202 (288)
                      |+++|||++|+|+..+++++++++++|+|||+|.||+++..||+++|+||++
T Consensus         1 ~~a~tE~~~g~d~~~~~t~a~~~~~~~~L~G~K~~v~~~~~a~~~~v~ar~d   52 (52)
T PF02770_consen    1 AFALTEPGAGSDLAAVETTARRDGDGYVLNGEKRFVSNAPDADWFLVFARTD   52 (52)
T ss_dssp             EEE--BTTBSSSGGG-SSEEEEETTEEEEEEEEEEEETTTTESEEEEEEEES
T ss_pred             CEEEcCCCCCCCcccCEEEeecccceEEEeeEEEEECCcCccCEEEEEEEEC
Confidence            6899999999999999999999999999999999999999999999999974

3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....

>KOG0136 consensus Acyl-CoA oxidase [Lipid transport and metabolism]

Probab=99.56  E-value=4.5e-14  Score=130.61  Aligned_cols=148  Identities=26%  Similarity=0.441  Sum_probs=130.2

Q ss_pred             hhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeC--CeEEEe----
Q 023057          107 RASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVD--GGYIIN----  180 (288)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~--~g~~l~----  180 (288)
                      +....-+.++..|..+....|..-|++||.++||.+....+.++|.|.||.++|++.+.++|+|+.+.  +.++||    
T Consensus       102 ~~~~~~~~pl~lH~~MFvp~l~~q~t~EQ~~~Wl~~a~~~~IiGtYAQTElGHGTnl~~LET~AtyD~~T~eFVl~TPt~  181 (670)
T KOG0136|consen  102 RVLGQEGHPLALHYGMFVPTLKGQGTDEQQEKWLSRALNMEIIGTYAQTELGHGTNLRGLETTATYDPKTQEFVLNTPTL  181 (670)
T ss_pred             hccccCCchhhhhhhhhhhHhhcCCCHHHHHHHHHhcccceEEEeehhhhhcccccccccceeeeecCCcceEEecCCCc
Confidence            34444455677887788889999999999999999999999999999999999999999999999875  558876    


Q ss_pred             -eEeeeeeC-CCCCCEEEEEEEeCCCCCCCceEEEEEeCCC-------CCeEecccccccCCCCCceeeEEeceeeeCCC
Q 023057          181 -GNKMWCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIEKGM-------PGFSTAQKLDKLGMRGSDTCELVFENCFVPNE  251 (288)
Q Consensus       181 -G~k~~v~~-~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~-------~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~  251 (288)
                       ..|||-.+ +..++|.+|.|+.-.++...++..|+||..+       |||++.+.-.++|..+..++-+.|+||+||.+
T Consensus       182 ta~KWWPGgLG~ssnhAvV~AqL~~~gk~~G~h~FiV~lRd~~th~pL~Gi~iGDIG~Kmg~ng~dNGfL~f~nvRIPR~  261 (670)
T KOG0136|consen  182 TATKWWPGGLGKSSNHAVVVAQLITKGKCYGPHPFIVQLRDEDTHKPLPGITVGDIGPKMGFNGVDNGFLGFDNVRIPRT  261 (670)
T ss_pred             ceecccCCccccccchheeeeeeeecccccccceeEEEccCccccCCCCCCeecCCCccccccCCccceeeecceeechH
Confidence             89999977 7889999999998766666788899999644       69999999999999999999999999999999


Q ss_pred             Ccc
Q 023057          252 NVL  254 (288)
Q Consensus       252 ~~l  254 (288)
                      +++
T Consensus       262 nmL  264 (670)
T KOG0136|consen  262 NML  264 (670)
T ss_pred             hhh
Confidence            998

>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []

Probab=98.70  E-value=1.9e-07  Score=80.09  Aligned_cols=122  Identities=21%  Similarity=0.361  Sum_probs=76.8

Q ss_pred             HHHHHhhchhHhcCCeeEEEEecCCCCC-C-CC----CCCeEE-EEEeCCeEEEeeEeeeeeCCCCCCEEEEEEEeC-CC
Q 023057          133 PAQKDKYLPKLISGEHVGALAMSEPNAG-S-DV----VGMKCK-ADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD-IK  204 (288)
Q Consensus       133 ~~~~~~~l~~~~~g~~~~~~a~te~~~g-~-d~----~~~~~~-a~~~~~g~~l~G~k~~v~~~~~ad~~lv~a~~~-~~  204 (288)
                      .+...+|...+.++++..+.+++.|..- | .+    ...-.+ .++++||++|+|.|...|+++.+|.++|+-... ..
T Consensus       122 ~~n~~~y~~~~~~ndL~~t~a~~dPq~DRs~~~~q~d~d~~lrVVee~~dGIvVrGAK~~~T~a~~adei~V~p~~~~~~  201 (264)
T PF11794_consen  122 AENIRRYYEYVQENDLFLTHAITDPQGDRSKPPHQEDPDVYLRVVEETDDGIVVRGAKMLATGAPYADEILVFPTRAMRP  201 (264)
T ss_dssp             HHHHHHHHHHHHHHT--EEEEES--SSSTTSTGGSSSCCSB-EEEEE-SSEEEEEEEEEEEETGCCSSEEEE--SSSSTT
T ss_pred             HHHHHHHHHHHHHhCcEeeeeeeCCCcCCCCCccccCCCceEEEEEEcCCCEEEeChhhhhcCCcccccEEEeeccCCCC
Confidence            3457788899999999999999998732 1 11    112233 456789999999999999999999999885432 22


Q ss_pred             CCCCceEEEEEeCCCCCeEecccccccCCC--CCc----------eeeEEeceeeeCCCCcc
Q 023057          205 AGSKGITAFIIEKGMPGFSTAQKLDKLGMR--GSD----------TCELVFENCFVPNENVL  254 (288)
Q Consensus       205 ~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~--~~~----------~~~v~~~~v~vp~~~~l  254 (288)
                      .+..--.+|.||.+.||+++.-......-+  ...          -+-|.||||+||+++++
T Consensus       202 ~d~dyAv~FavP~~tpGlk~i~R~s~~~~~~~~~D~PlssrfdE~Da~vvFDdVfVPWeRVF  263 (264)
T PF11794_consen  202 GDEDYAVAFAVPMNTPGLKIICRESYADGRRSPFDHPLSSRFDEMDALVVFDDVFVPWERVF  263 (264)
T ss_dssp             CCGGG-EEEEEETT-TTEEEEE---TTGCCG-TTT-TTTTS----EEEEEEEEEEEEGGGEE
T ss_pred             CCCceEEEEEccCCCCCEEEEeCCCCCCCccccCcCCcccccCCceEEEEECCcccchhhcc
Confidence            223345689999999999863322111111  011          26788999999999875

The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.

>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.47  E-value=1.4e-06  Score=79.45  Aligned_cols=122  Identities=18%  Similarity=0.283  Sum_probs=85.2

Q ss_pred             HHHHhhchhHhcCCeeEEEEecCCCCCCCCC--------CCeEEEEEeCCeEEEeeEeeeeeCCCCCCEEEEE-EEeCCC
Q 023057          134 AQKDKYLPKLISGEHVGALAMSEPNAGSDVV--------GMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVY-AKTDIK  204 (288)
Q Consensus       134 ~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~--------~~~~~a~~~~~g~~l~G~k~~v~~~~~ad~~lv~-a~~~~~  204 (288)
                      +...+|+..+.+.+...+-+++.|..--+-.        ..--....++||++|.|.|..+|++..+|..+|+ .+....
T Consensus       131 ~n~~~~~k~vqk~DL~~~hA~tdpk~dRsk~p~e~~dpdiyvrVvee~~dGIVVrGAK~~aT~~a~tdei~V~Pt~~~~~  210 (493)
T COG2368         131 ENAREYYKEVQKNDLALTHAITDPKGDRSKRPSEQKDPDIYVRVVEETEDGIVVRGAKALATGSALTDEIFVLPTRSMQE  210 (493)
T ss_pred             HHHHHHHHHHHhcCceeeeceecCCccCCCChhhccCCCeeEEEEEEecCceEEEChHHHhccccccceEEEeeccccCC
Confidence            5677899999999999999999987432111        1112234568999999999999999999999888 554433


Q ss_pred             CCCCceEEEEEeCCCCCeEecccc--c-ccCCCCCce------------eeEEeceeeeCCCCccc
Q 023057          205 AGSKGITAFIIEKGMPGFSTAQKL--D-KLGMRGSDT------------CELVFENCFVPNENVLG  255 (288)
Q Consensus       205 ~~~~~~~~~lv~~~~~gv~~~~~~--~-~~Gl~~~~~------------~~v~~~~v~vp~~~~l~  255 (288)
                      ++.+--.+|.+|.+.|||.+.-..  + .-|+.+.+.            +-|.||||+||+++++-
T Consensus       211 ~d~dfAv~FaiP~dt~GvK~i~r~s~~~~~~~~~g~fd~plssrfde~dailVfDdVfVPWERVf~  276 (493)
T COG2368         211 DDKDFAVAFAIPMDTEGVKFICRRSYELGRGAEGGPFDYPLSSRFDENDAILVFDDVFVPWERVFI  276 (493)
T ss_pred             CCCceEEEEEcccCCCceEEEecCcchhhcccCCCCCCCccccccccCceEEEecccccchhheee
Confidence            223345679999999998852221  1 111111121            44899999999999873

>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component

Probab=98.44  E-value=5.4e-06  Score=77.77  Aligned_cols=121  Identities=16%  Similarity=0.192  Sum_probs=84.0

Q ss_pred             HHHHHhhchhHhcCCeeEEEEecCCCCCCCC------CCCeEEEEEeCCeEEEeeEeeeeeCCCCCCEEEE-EEEe--CC
Q 023057          133 PAQKDKYLPKLISGEHVGALAMSEPNAGSDV------VGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVV-YAKT--DI  203 (288)
Q Consensus       133 ~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~------~~~~~~a~~~~~g~~l~G~k~~v~~~~~ad~~lv-~a~~--~~  203 (288)
                      .+...+|+..+.+.++..+.+++.|..--..      ...--..+++++|++|+|.|...|+++.+|.++| ....  ..
T Consensus       135 ~~n~~~yy~~~qenDL~~~hA~~dPk~DRsk~p~e~~D~~v~VVee~~dGIVVrGAK~~aT~a~~a~ei~V~~~~~~~~~  214 (519)
T TIGR02310       135 EDNARNWYKRIQESCLYFNHAIVNPPIDRNKPIDQVKDVYIKIEEERDDGIVVSGAKVVATNSALTHYNFIGFGSAQIIG  214 (519)
T ss_pred             HHHHHHHHHHHHHhCceeecceeCCCCCCCCccccCCCCceEEEEEcCCcEEEeCHHHHhcccchhcceeeccCcccccC
Confidence            3567889999999999999999988743111      1112334566899999999999999999999888 3333  11


Q ss_pred             CCCCCceEEEEEeCCCCCeEecccccccC---------CC-------CCceeeEEeceeeeCCCCccc
Q 023057          204 KAGSKGITAFIIEKGMPGFSTAQKLDKLG---------MR-------GSDTCELVFENCFVPNENVLG  255 (288)
Q Consensus       204 ~~~~~~~~~~lv~~~~~gv~~~~~~~~~G---------l~-------~~~~~~v~~~~v~vp~~~~l~  255 (288)
                      + +.+--..|.||.+.||+++.-.. ...         .+       .-.-+-|.||||+||+++|+-
T Consensus       215 ~-d~dyAvaFavP~dtpGlk~IcR~-s~~~~~~~~~~~fD~PlssrfdE~Da~vVFDdVfVPWErVF~  280 (519)
T TIGR02310       215 D-NDDFALMFIAPMDAEGVKLICRH-SYELVAGATGSPFDYPLSSRFDENDAILVMDSVFIPWENVLI  280 (519)
T ss_pred             C-CCCeEEEEEeEcCCCceEEEeCC-chhhccccCCCCCcCccccccCCceEEEEeCCcccchHHcee
Confidence            1 22234579999999999964221 111         11       011266889999999999983

This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).

>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A

Probab=89.79  E-value=0.35  Score=36.78  Aligned_cols=35  Identities=31%  Similarity=0.488  Sum_probs=27.8

Q ss_pred             hHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCe
Q 023057          114 LSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEH  148 (288)
Q Consensus       114 ~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~  148 (288)
                      .++..|..+....|...|++||+++|+|...+.+.
T Consensus        90 ~p~~lH~~mFip~I~~qgt~EQ~~~Wlp~a~~~~I  124 (125)
T PF14749_consen   90 LPLGLHFGMFIPTIMGQGTEEQQAKWLPKAENYEI  124 (125)
T ss_dssp             -THHHHHHTHHHHHHHHS-HHHHHHHHHHHHTTSS
T ss_pred             chhhhHHHHHHHHHHHcCCHHHHHHHHHHHHCCcc
Confidence            33558877888999999999999999999877653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	288
1ivh_A	394	Structure Of Human Isovaleryl-coa Dehydrogenase At		7e-95
1jqi_A	388	Crystal Structure Of Rat Short Chain Acyl-Coa Dehyd		2e-42
1buc_A	383	Three-Dimensional Structure Of Butyryl-Coa Dehydrog		9e-41
1ws9_A	387	Crystal Structure Of Project Id Tt0172 From Thermus		2e-40
2vig_A	391	Crystal Structure Of Human Short-Chain Acyl Coa Deh		4e-40
2jif_A	404	Structure Of Human Short-Branched Chain Acyl-Coa De		5e-39
2dvl_A	372	Crystal Structure Of Project Tt0160 From Thermus Th		3e-38
3mpi_A	397	Structure Of The Glutaryl-Coenzyme A Dehydrogenase		8e-38
3pfd_A	393	Crystal Structure Of An Acyl-Coa Dehydrogenase From		4e-36
2pg0_A	385	Crystal Structure Of Acyl-Coa Dehydrogenase From Ge		3e-35
3d6b_A	395	2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogena		7e-35
3gqt_A	399	Crystal Structure Of Glutaryl-Coa Dehydrogenase Fro		8e-35
3eom_A	396	2.4 A Crystal Structure Of Native Glutaryl-Coa Dehy		8e-35
1egd_A	396	Structure Of T255e, E376g Mutant Of Human Medium Ch		1e-34
2z1q_A	577	Crystal Structure Of Acyl Coa Dehydrogenase Length		2e-34
1ukw_A	379	Crystal Structure Of Medium-Chain Acyl-Coa Dehydrog		3e-34
2a1t_A	421	Structure Of The Human Mcad:etf E165betaa Complex L		5e-34
1ege_A	396	Structure Of T255e, E376g Mutant Of Human Medium Ch		6e-34
1udy_A	396	Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaocta		8e-34
3mdd_A	385	Crystal Structures Of Medium Chain Acyl-Coa Dehydro		1e-33
3nf4_A	387	Crystal Structure Of Acyl-Coa Dehydrogenase From My		6e-33
3owa_A	597	Crystal Structure Of Acyl-Coa Dehydrogenase Complex		1e-32
2uxw_A	607	Crystal Structure Of Human Very Long Chain Acyl-coa		2e-32
3b96_A	587	Structural Basis For Substrate Fatty-Acyl Chain Spe		3e-32
3r7k_A	403	Crystal Structure Of A Probable Acyl Coa Dehydrogen		4e-28
3oib_A	403	Crystal Structure Of A Putative Acyl-Coa Dehydrogen		7e-27
1rx0_A	393	Crystal Structure Of Isobutyryl-Coa Dehydrogenase C		2e-25
3swo_A	399	Crystal Structure Of A Glutaryl-Coa Dehydrogenase F		3e-25
2eba_A	385	Crystal Structure Of The Putative Glutaryl-coa Dehy		5e-24
2ix5_A	436	Short Chain Specific Acyl-Coa Oxidase From Arabidop		2e-23
2ix6_A	449	Short Chain Specific Acyl-Coa Oxidase From Arabidop		2e-23
3sf6_A	403	Crystal Structure Of Glutaryl-Coa Dehydrogenase Fro		2e-22
1sir_A	394	The Crystal Structure And Mechanism Of Human Glutar		7e-22
1siq_A	392	The Crystal Structure And Mechanism Of Human Glutar		7e-22
2r0m_A	394	The Effect Of A Glu370asp Mutation In Glutaryl-Coa		8e-22
3m9v_A	439	X-Ray Structure Of A Kijd3 In Complex With Dtdp Len		2e-11
3mxl_A	395	Crystal Structure Of Nitrososynthase From Micromono		3e-11
1r2j_A	366	Fkbi For Biosynthesis Of Methoxymalonyl Extender Un		1e-08
3djl_A	541	Crystal Structure Of Alkylation Response Protein E.		2e-08
2wbi_A	428	Crystal Structure Of Human Acyl-Coa Dehydrogenase 1		3e-08
4doy_A	437	Crystal Structure Of Dibenzothiophene Desulfurizati		1e-07
4hr3_A	415	Structure Of A Putative Acyl-Coa Dehydrogenase From		3e-06
2fon_A	683	X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxid		6e-04
2c0u_A	439	Crystal Structure Of A Covalent Complex Of Nitroalk		7e-04

>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6 Angstroms Resolution: Structural Basis For Substrate Specificity Length = 394

Iteration: 1
 Score =  343 bits (880), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 164/256 (64%), Positives = 201/256 (78%), Gaps = 2/256 (0%)
Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXX 91
             + Q Q ++++ +F +E++AP+A  ID+SN F      WK +GN  + GITAP +    
Sbjct: 13  LSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGS 72
Query: 92  XXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
                 H + MEEISRASG+VGLSYGAHSNLCINQLVR+G+ AQK+KYLPKLISGE++GA
Sbjct: 73  GLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGA 132
Query: 152 LAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA--GSKG 209
           LAMSEPNAGSDVV MK KA++    YI+NGNK W TNGP A  L+VYAKTD+ A   S+G
Sbjct: 133 LAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAAVPASRG 192
Query: 210 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLD 269
           ITAFI+EKGMPGFST++KLDKLGMRGS+TCEL+FE+C +P  N+LG E KGVYV+MSGLD
Sbjct: 193 ITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHENKGVYVLMSGLD 252
Query: 270 LERLVLAAGPLGIMQA 285
           LERLVLA GPLG+MQA
Sbjct: 253 LERLVLAGGPLGLMQA 268

>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa Dehydrogenase Complexed With Acetoacetyl-Coa Length = 388

Iteration: 1
 Score =  169 bits (427), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 88/259 (33%), Positives = 140/259 (54%), Gaps = 2/259 (0%)
Query: 29  SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEX 88
           S+   +T    +++   FA + + P AA +D+ + FP   +  K MG   L  +  P+E 
Sbjct: 7   SVELPETHQMLRQTCRDFAEKELVPIAAQLDKEHLFP--TSQVKKMGELGLLAMDVPEEL 64
Query: 89  XXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEH 148
                    + IA+EEISR   S G+    +++L +  +++ GS  QK +++    +G+ 
Sbjct: 65  SGAGLDYLAYSIALEEISRGCASTGVIMSVNNSLYLGPILKFGSSQQKQQWITPFTNGDK 124
Query: 149 VGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSK 208
           +G  A+SEP  GSD       A      +++NG K W TN   A   VV+A TD    +K
Sbjct: 125 IGCFALSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITNSWEASATVVFASTDRSRQNK 184
Query: 209 GITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGL 268
           GI+AF++    PG +  +K DKLG+R S T  L+FE+C +P EN+LG+ G G  + M  L
Sbjct: 185 GISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTL 244
Query: 269 DLERLVLAAGPLGIMQAPV 287
           D+ R+ +A+  LGI QA +
Sbjct: 245 DMGRIGIASQALGIAQASL 263

>pdb|1BUC|A Chain A, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase From Megasphaera Elsdenii Length = 383

Iteration: 1
 Score =  163 bits (413), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 82/191 (42%), Positives = 124/191 (64%), Gaps = 1/191 (0%)
Query: 98  HCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEP 157
           + +A+EE+++    V ++  A  +LC N + + G+ AQK+K+L  L+ G  +GA  ++EP
Sbjct: 72  YILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEP 131
Query: 158 NAGSDVVGMKCKADRVDGG-YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIE 216
           NAG+D  G +  A + D G Y +NG+K++ TNG  A   +V+A TD   G+ GITAFI+E
Sbjct: 132 NAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKSKGNHGITAFILE 191
Query: 217 KGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLA 276
            G PGF+  +K DK+G+  S T ELVF++  VP EN+LG+EGKG  + M  LD  R+ +A
Sbjct: 192 DGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIAMMTLDGGRIGVA 251
Query: 277 AGPLGIMQAPV 287
           A  LGI +A +
Sbjct: 252 AQALGIAEAAL 262

>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus Thermophilus Hb8 Length = 387

Iteration: 1
 Score =  162 bits (410), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 87/244 (35%), Positives = 139/244 (56%), Gaps = 6/244 (2%)
Query: 45  QFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEE 104
           +F +  +AP AA  D++ +FP D  L + +  F + G   P+               +E 
Sbjct: 20  EFLKAEVAPGAAERDRTGAFPWD--LVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEA 77
Query: 105 ISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVV 164
           I+   G++ L+  +H++L    ++  GS AQK+ +LPKL SGE +GA  ++EP +GSD  
Sbjct: 78  IAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAA 137
Query: 165 GMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD----IKAGSKGITAFIIEKGMP 220
            +K KA++V+GG+ +NG K + T G VA   VV A+TD     +   +GI+AF   +   
Sbjct: 138 ALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSPERKHQGISAFAFFRPER 197
Query: 221 GFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPL 280
           G    +K +KLG+  SDT +L+ E+ FVP E +LG+ GKG Y ++  LD  R+ +AA  +
Sbjct: 198 GLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDVLRVLDGGRIGIAAMAV 257
Query: 281 GIMQ 284
           G+ Q
Sbjct: 258 GLGQ 261

>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa Dehydrogenase Length = 391

Iteration: 1
 Score =  161 bits (408), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 89/257 (34%), Positives = 138/257 (53%), Gaps = 4/257 (1%)
Query: 29  SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEX 88
           S+   +T     ++   FA + + P AA +D+ + FP      K MG   L  +  P+E 
Sbjct: 3   SVELPETHQMLLQTCRDFAEKELFPIAAQVDKEHLFP--AAQVKKMGGLGLLAMDVPEEL 60
Query: 89  XXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEH 148
                    + IAMEEISR   S G+    +++L +  +++ GS  QK  ++    SG+ 
Sbjct: 61  GGAGLDYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDK 120
Query: 149 VGALAMSEPNAGSDVVGMKCKADRVDG-GYIINGNKMWCTNGPVAQTLVVYAKTDIKAGS 207
           +G  A+SEP  GSD  G      R +G  +++NG K W TN   A   VV+A TD    +
Sbjct: 121 IGCFALSEPGNGSDA-GAASTTARAEGDSWVLNGTKAWITNAWEASAAVVFASTDRALQN 179
Query: 208 KGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSG 267
           K I+AF++    PG +  +K DKLG+RGS T  L+FE+C +P +++LG+ G G  + M  
Sbjct: 180 KSISAFLVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAMQT 239
Query: 268 LDLERLVLAAGPLGIMQ 284
           LD+ R+ +A+  LGI Q
Sbjct: 240 LDMGRIGIASQALGIAQ 256

>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa Dehydrogenase (Acadsb) Length = 404

Iteration: 1
 Score =  157 bits (398), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 92/256 (35%), Positives = 139/256 (54%), Gaps = 9/256 (3%)
Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFN--LHGITAPQEXX 89
           F D ++  K SV +FA+E IAP  + +D+++   + V    + G F   L GI    E  
Sbjct: 29  FTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEKSV----IQGLFQQGLMGIEVDPEYG 84
Query: 90  XXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVR-HGSPAQKDKYLPKLISGEH 148
                     + +EE+++   SV + +    N  IN L+R HG+  QK  YLP+L + E 
Sbjct: 85  GTGASFLSTVLVIEELAKVDASVAV-FCEIQNTLINTLIRKHGTEEQKATYLPQLTT-EK 142
Query: 149 VGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSK 208
           VG+  +SE  AGSD   +K +AD+    Y++NG+KMW ++   A   +V A  D   G K
Sbjct: 143 VGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDPTIGYK 202
Query: 209 GITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGL 268
           GIT+F++++  PG    +  +KLG+R S TC L FEN  VP  N+LGQ G G    +  L
Sbjct: 203 GITSFLVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIGSL 262
Query: 269 DLERLVLAAGPLGIMQ 284
           +  R+ +AA  LG+ Q
Sbjct: 263 NEGRIGIAAQMLGLAQ 278

>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus Thermophilus Hb8 Length = 372

Iteration: 1
 Score =  155 bits (391), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 92/247 (37%), Positives = 139/247 (56%), Gaps = 13/247 (5%)
Query: 41  ESVGQFARENIAPRAANIDQSNSFPQDVNLW---KLMGNFNLHGITAPQEXXXXXXXXXX 97
           ++V + ARE + P A   D+   +P     W   K +    L G+T P+E          
Sbjct: 12  DAVRRVAREVLYPLAPEYDRKAEYP-----WPQLKALAELGLLGMTTPEEWGGVGLDSVT 66
Query: 98  HCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEP 157
             +A+EE++ A  SV +     S L    L+R GS AQK +YL  L  GE +GA  ++EP
Sbjct: 67  WALALEELAAADPSVAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAFCLTEP 126
Query: 158 NAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEK 217
            AGSD   ++ +A RV GG+++NG K W T+   A   VV A+T+     KGI+AF++EK
Sbjct: 127 QAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGHAHLYVVMARTE-----KGISAFLVEK 181
Query: 218 GMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAA 277
           G PG S  +  +K+G+  + T E+  E  FVP EN+LG+EG+G+   ++GLD  R+ +AA
Sbjct: 182 GTPGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEENLLGEEGRGLAYALAGLDSGRVGVAA 241
Query: 278 GPLGIMQ 284
             +GI +
Sbjct: 242 QAVGIAR 248

>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase Glutaryl-Coa Complex Length = 397

Iteration: 1
 Score =  154 bits (388), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 90/250 (36%), Positives = 132/250 (52%), Gaps = 5/250 (2%)
Query: 39  FKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEX--XXXXXXXX 96
            ++ V  F  + I P A   D  N FP +  + + MG     G   P+E           
Sbjct: 12  LQKEVRNFVNKKIVPFADQWDNENHFPYEEAV-RPMGELGFFGTVIPEEYGGEGMDQGWL 70
Query: 97  XHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSE 156
              I  EEI+R S ++ +        C   ++ +GS A K KY+PKL S E +G   ++E
Sbjct: 71  AAMIVTEEIARGSSALRVQLNMEVLGCAYTILTYGSEALKKKYVPKLSSAEFLGGFGITE 130
Query: 157 PNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIE 216
           P+AGSDV+ M   A+     +++NG+K W +N   A  L+ YA TD  AGS+G++AF+IE
Sbjct: 131 PDAGSDVMAMSSTAEDKGDHWLLNGSKTWISNAAQADVLIYYAYTDKAAGSRGLSAFVIE 190
Query: 217 -KGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVL 275
            +  PG  T+  L+KLG   S T EL  +N  VP EN+LG+ G G  ++   L+  RL  
Sbjct: 191 PRNFPGIKTSN-LEKLGSHASPTGELFLDNVKVPKENILGKPGDGARIVFGSLNHTRLSA 249
Query: 276 AAGPLGIMQA 285
           AAG +G+ QA
Sbjct: 250 AAGGVGLAQA 259

>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Reduced Flavin Adenine Dinucleotide Solved By Combined Iodide Ion Sad Mr Length = 393

Iteration: 1
 Score =  148 bits (373), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 86/254 (33%), Positives = 131/254 (51%), Gaps = 9/254 (3%)
Query: 34  DTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITA---PQEXXX 90
           +  +  +E++   A + IAP AA +D+   FP++      +   N  G +A   P+E   
Sbjct: 21  EEHIALREAIRALAEKEIAPYAAEVDEKARFPEEA-----LAALNSSGFSAIHVPEEYGG 75
Query: 91  XXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVG 150
                   CI +EE++R   S  L   A + L    L+  GS   K + LP + SGE + 
Sbjct: 76  QGADSVATCIVIEEVARVDCSASL-IPAVNKLGTMGLILRGSEELKKQVLPAVASGEAMA 134
Query: 151 ALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGI 210
           + A+SE  AGSD   M+ +A      +I+NG+K W TNG  +    V A TD   G+ GI
Sbjct: 135 SYALSEREAGSDAASMRTRAVADGDDWILNGSKCWITNGGKSTWYTVMAVTDPDKGANGI 194
Query: 211 TAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDL 270
           +AF++ K   GF+   K  KLG++GS T EL FENC +P + ++G+ G G    ++ LD 
Sbjct: 195 SAFMVHKDDEGFTVGPKERKLGIKGSPTTELYFENCRIPGDRIIGEPGTGFKTALATLDH 254
Query: 271 ERLVLAAGPLGIMQ 284
            R  + A  +GI Q
Sbjct: 255 TRPTIGAQAVGIAQ 268

>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Geobacillus Kaustophilus Length = 385

Iteration: 1
 Score =  145 bits (365), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 133/253 (52%), Gaps = 9/253 (3%)
Query: 28  TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAP-- 85
           T+    +    F+ +  +F  +   P   + ++    P+  + W  MG    +G   P  
Sbjct: 6   TARYLREEHHMFRAAFRKFLEKEAYPHYNDWEKRGIIPR--SFWAKMGE---NGFLCPWV 60
Query: 86  QEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLIS 145
            E          + + + E     GS  +  G H+++    +  +G+  QK K+LPK ++
Sbjct: 61  DEKYGGLNADFAYSVVINEELEKVGSSLVGIGLHNDIVTPYIASYGTEEQKQKWLPKCVT 120
Query: 146 GEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA 205
           GE + A+AM+EP AGSD+  +   A +    YI+NG K + TNG  A  +VV  KTD +A
Sbjct: 121 GELITAIAMTEPGAGSDLANISTTAVKDGDYYIVNGQKTFITNGIHADLIVVACKTDPQA 180
Query: 206 G--SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYV 263
               +GI+  ++E+  PGF+  +KL+K+G+   DT EL F++  VP  N+LG+EGKG Y 
Sbjct: 181 KPPHRGISLLVVERDTPGFTRGRKLEKVGLHAQDTAELFFQDAKVPAYNLLGEEGKGFYY 240
Query: 264 MMSGLDLERLVLA 276
           +M  L  ERLV+A
Sbjct: 241 LMEKLQQERLVVA 253

>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 395

Iteration: 1
 Score =  144 bits (362), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 88/260 (33%), Positives = 133/260 (51%), Gaps = 8/260 (3%)
Query: 30  LLFD----DTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAP 85
           LL D    D +   +++   +A+  +APR     +  +   D  +++ MG   L G T P
Sbjct: 12  LLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHET--TDAAIFREMGEIGLLGPTIP 69
Query: 86  QEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLIS 145
           ++          + +   E+ R            S+L +  +   GS AQK+KYLPKL +
Sbjct: 70  EQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLAT 129
Query: 146 GEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA 205
           GE +G   ++EPN GSD   M  +A +V GGY ++G+KMW TN P+A   VV+AK D + 
Sbjct: 130 GEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLD-ED 188
Query: 206 GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMM 265
           G   I  FI+EKG  G S      K+G+R S T E+V +  FVP EN+L    KG+    
Sbjct: 189 GRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPHV-KGLRGPF 247
Query: 266 SGLDLERLVLAAGPLGIMQA 285
           + L+  R  +A G LG  ++
Sbjct: 248 TCLNSARYGIAWGALGAAES 267

>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei With Fragment (1,4-Dimethyl-1,2,3,4- Tetrahydroquinoxalin-6-Yl)methylamine Length = 399

Iteration: 1
 Score =  144 bits (362), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 88/260 (33%), Positives = 133/260 (51%), Gaps = 8/260 (3%)
Query: 30  LLFD----DTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAP 85
           LL D    D +   +++   +A+  +APR     +  +   D  +++ MG   L G T P
Sbjct: 16  LLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHET--TDAAIFREMGEIGLLGPTIP 73
Query: 86  QEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLIS 145
           ++          + +   E+ R            S+L +  +   GS AQK+KYLPKL +
Sbjct: 74  EQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLAT 133
Query: 146 GEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA 205
           GE +G   ++EPN GSD   M  +A +V GGY ++G+KMW TN P+A   VV+AK D + 
Sbjct: 134 GEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLD-ED 192
Query: 206 GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMM 265
           G   I  FI+EKG  G S      K+G+R S T E+V +  FVP EN+L    KG+    
Sbjct: 193 GRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPHV-KGLRGPF 251
Query: 266 SGLDLERLVLAAGPLGIMQA 285
           + L+  R  +A G LG  ++
Sbjct: 252 TCLNSARYGIAWGALGAAES 271

>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 396

Iteration: 1
 Score =  144 bits (362), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 88/260 (33%), Positives = 133/260 (51%), Gaps = 8/260 (3%)
Query: 30  LLFD----DTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAP 85
           LL D    D +   +++   +A+  +APR     +  +   D  +++ MG   L G T P
Sbjct: 13  LLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHET--TDAAIFREMGEIGLLGPTIP 70
Query: 86  QEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLIS 145
           ++          + +   E+ R            S+L +  +   GS AQK+KYLPKL +
Sbjct: 71  EQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLAT 130
Query: 146 GEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA 205
           GE +G   ++EPN GSD   M  +A +V GGY ++G+KMW TN P+A   VV+AK D + 
Sbjct: 131 GEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLD-ED 189
Query: 206 GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMM 265
           G   I  FI+EKG  G S      K+G+R S T E+V +  FVP EN+L    KG+    
Sbjct: 190 GRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPHV-KGLRGPF 248
Query: 266 SGLDLERLVLAAGPLGIMQA 285
           + L+  R  +A G LG  ++
Sbjct: 249 TCLNSARYGIAWGALGAAES 268

>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396

Iteration: 1
 Score =  143 bits (360), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/262 (36%), Positives = 133/262 (50%), Gaps = 12/262 (4%)
Query: 29  SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDV--NLWKLMGNFNLHGITAPQ 86
           S  F + Q +F+ +  +FARE I P AA  D++  +P  +    W+L G  N H    P+
Sbjct: 13  SFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWEL-GLMNTH---IPE 68
Query: 87  EXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLIS 145
                       C+  EE+  A G  G+      N L    ++  G+  QK KYL ++  
Sbjct: 69  NCGGLGLGTFDACLISEEL--AYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTE 126
Query: 146 GEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK- 204
              + A  ++EP AGSDV G+K KA++    YIING KMW TNG  A    + A++D   
Sbjct: 127 EPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDP 186
Query: 205 --AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVY 262
               +K  T FI+E   PG    +K   +G R SDT  +VFE+  VP ENVL  +G G  
Sbjct: 187 KAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFK 246
Query: 263 VMMSGLDLERLVLAAGPLGIMQ 284
           V M   D ER V+AAG +G+ Q
Sbjct: 247 VAMGAFDKERPVVAAGAVGLAQ 268

>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase Length = 577

Iteration: 1
 Score =  142 bits (358), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 83/252 (32%), Positives = 129/252 (51%), Gaps = 8/252 (3%)
Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXX 91
           FD++  +   +   F    + P    ++       +V L +  G   L  I  P+E    
Sbjct: 28  FDESVKEIARTTRTFVEREVLPLLERMEHGE-LELNVPLMRKAGELGLLAIDVPEEYGGL 86
Query: 92  XXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
                   +  EE+S  SG   ++YGAH+++    LV  G+  QK KYLPKL SGE + A
Sbjct: 87  DLPKVISTVVAEELS-GSGGFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASGEWIAA 145
Query: 152 LAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG 209
             ++EP +GSD +  K +A   + G  YI+NG K W +N   A    V+AK D     + 
Sbjct: 146 YCLTEPGSGSDALAAKTRATLSEDGKHYILNGVKQWISNAGFAHLFTVFAKVD----GEH 201
Query: 210 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLD 269
            TAF++E+  PG S   +  K+G++ S T +++ E+  VP ENVLG+ GKG  +  + L+
Sbjct: 202 FTAFLVERDTPGLSFGPEEKKMGIKASSTRQVILEDVKVPVENVLGEIGKGHKIAFNVLN 261
Query: 270 LERLVLAAGPLG 281
           + R  L AG +G
Sbjct: 262 VGRYKLGAGAVG 273

>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase From Thermus Thermophilus Hb8 Length = 379

Iteration: 1
 Score =  142 bits (357), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 83/254 (32%), Positives = 131/254 (51%), Gaps = 9/254 (3%)
Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGI---TAPQEX 88
             + Q Q +    +FA+E I P A   D+    P     W ++   +  G+     P+E 
Sbjct: 5   LTEEQRQLQALARRFAKEVILPVAQEYDEKEEVP-----WPVIEKLHEVGLLNAIIPEEY 59
Query: 89  XXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEH 148
                      I  EE++ A   +  +    S+L I  ++  G+  QK+++L  L     
Sbjct: 60  GGMGLKMLDEVIVGEELAYACMGI-YTIPMASDLGITPVLLAGTEEQKERFLRPLTEKPA 118
Query: 149 VGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSK 208
           + A A+SEP  GSD   +K +A R    Y++NG KMW +NG  A+ +VV+A  + +   K
Sbjct: 119 LAAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGGEAEWVVVFATVNPELRHK 178
Query: 209 GITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGL 268
           G+ A ++E+G PGF   +   K+G R S T ELVFE+  VP EN LG+EG+G  + M  L
Sbjct: 179 GVVALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGEEGEGFKIAMQTL 238
Query: 269 DLERLVLAAGPLGI 282
           +  R+ +AAG +G+
Sbjct: 239 NKTRIPVAAGSVGV 252

>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex Length = 421

Iteration: 1
 Score =  141 bits (355), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 94/262 (35%), Positives = 132/262 (50%), Gaps = 12/262 (4%)
Query: 29  SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDV--NLWKLMGNFNLHGITAPQ 86
           S  F + Q +F+ +  +FARE I P AA  D++  +P  +    W+L G  N H    P+
Sbjct: 38  SFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWEL-GLMNTH---IPE 93
Query: 87  EXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLIS 145
                       C+  EE+  A G  G+      N L    ++  G+  QK KYL ++  
Sbjct: 94  NCGGLGLGTFDACLISEEL--AYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTE 151
Query: 146 GEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK- 204
              + A  ++EP AGSDV G+K KA++    YIING KMW TNG  A    + A++D   
Sbjct: 152 EPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDP 211
Query: 205 --AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVY 262
               +K  T FI+E   PG    +K   +G R SDT  +VFE+  VP ENVL  +G G  
Sbjct: 212 KAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFK 271
Query: 263 VMMSGLDLERLVLAAGPLGIMQ 284
           V M   D  R V+AAG +G+ Q
Sbjct: 272 VAMGAFDKTRPVVAAGAVGLAQ 293

>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396

Iteration: 1
 Score =  140 bits (354), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 94/262 (35%), Positives = 132/262 (50%), Gaps = 12/262 (4%)
Query: 29  SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDV--NLWKLMGNFNLHGITAPQ 86
           S  F + Q +F+ +  +FARE I P AA  D++  +P  +    W+L G  N H    P+
Sbjct: 13  SFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWEL-GLMNTH---IPE 68
Query: 87  EXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLIS 145
                       C+  EE+  A G  G+      N L    ++  G+  QK KYL ++  
Sbjct: 69  NCGGLGLGTFDACLISEEL--AYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTE 126
Query: 146 GEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK- 204
              + A  ++EP AGSDV G+K KA++    YIING KMW TNG  A    + A++D   
Sbjct: 127 EPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDP 186
Query: 205 --AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVY 262
               +K  T FI+E   PG    +K   +G R SDT  +VFE+  VP ENVL  +G G  
Sbjct: 187 KAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFK 246
Query: 263 VMMSGLDLERLVLAAGPLGIMQ 284
           V M   D  R V+AAG +G+ Q
Sbjct: 247 VAMGAFDKTRPVVAAGAVGLAQ 268

>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaoctanoyl-Coa Length = 396

Iteration: 1
 Score =  140 bits (353), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 93/263 (35%), Positives = 129/263 (49%), Gaps = 8/263 (3%)
Query: 26  SSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAP 85
           S  S    + Q +F+ +  +FARE I P AA  D++  +P  V L K      L     P
Sbjct: 10  SGFSFELTEQQKEFQATARKFAREEIIPVAAEYDRTGEYP--VPLLKRAWELGLMNTHIP 67
Query: 86  QEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLI 144
           +            C+  EE+  A G  G+     +N L    L+  G+  Q+ KYL ++ 
Sbjct: 68  ESFGGLGLGIIDSCLITEEL--AYGCTGVQTAIEANTLGQVPLIIGGNYQQQKKYLGRMT 125
Query: 145 SGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK 204
               + A  ++EP AGSDV G+K KA++    YIING KMW TNG  A    + A++D  
Sbjct: 126 EEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPD 185
Query: 205 ---AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGV 261
                SK  T FI+E   PG    +K   +G R SDT  +VFE+  VP ENVL  EG G 
Sbjct: 186 PKAPASKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTGEGAGF 245
Query: 262 YVMMSGLDLERLVLAAGPLGIMQ 284
            + M   D  R  +AAG +G+ Q
Sbjct: 246 KIAMGTFDKTRPPVAAGAVGLAQ 268

>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase From Pig Liver Mitochondria With And Without Substrate Length = 385

Iteration: 1
 Score =  139 bits (351), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/260 (35%), Positives = 128/260 (49%), Gaps = 8/260 (3%)
Query: 29  SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEX 88
           S    + Q +F+ +  +FARE I P AA  D++  +P  V L K      L     P+  
Sbjct: 3   SFELTEQQKEFQATARKFAREEIIPVAAEYDRTGEYP--VPLLKRAWELGLMNTHIPESF 60
Query: 89  XXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGE 147
                     C+  EE+  A G  G+     +N L    L+  G+  Q+ KYL ++    
Sbjct: 61  GGLGLGIIDSCLITEEL--AYGCTGVQTAIEANTLGQVPLIIGGNYQQQKKYLGRMTEEP 118
Query: 148 HVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK--- 204
            + A  ++EP AGSDV G+K KA++    YIING KMW TNG  A    + A++D     
Sbjct: 119 LMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKA 178
Query: 205 AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVM 264
             SK  T FI+E   PG    +K   +G R SDT  +VFE+  VP ENVL  EG G  + 
Sbjct: 179 PASKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTGEGAGFKIA 238
Query: 265 MSGLDLERLVLAAGPLGIMQ 284
           M   D  R  +AAG +G+ Q
Sbjct: 239 MGTFDKTRPPVAAGAVGLAQ 258

>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Flavin Adenine Dinucleotide Length = 387

Iteration: 1
 Score =  137 bits (346), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 135/256 (52%), Gaps = 5/256 (1%)
Query: 30  LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXX 89
           LL      +  E   + A + + P     ++  ++P+ V  ++ +G   L  +  P+E  
Sbjct: 14  LLPSQEAAELIELTREIADKVLDPIVDRHEKDETYPEGV--FEQLGAAGLLSLPQPEEWG 71
Query: 90  XXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHV 149
                   +   +EEI+    SV ++   HS L  + L+  G+  QK ++LP ++SGE +
Sbjct: 72  GGGQPYEVYLQVLEEIAARWASVAVAVSVHS-LSSHPLLVFGTEEQKKRWLPGMLSGEQI 130
Query: 150 GALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG 209
           GA ++SEP AGSD   ++C A   DGGY+ING+K W T+G  A    ++A+T    GS+G
Sbjct: 131 GAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHGGKADFYTLFARTG--EGSRG 188
Query: 210 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLD 269
           ++ F++    PG S  +  +K+G+    T    ++N  +  +  +G+EG+G+ +  S LD
Sbjct: 189 VSCFLVPADQPGLSFGKPEEKMGLHAVPTTSAFYDNARIDADRRIGEEGQGLQIAFSALD 248
Query: 270 LERLVLAAGPLGIMQA 285
             RL +AA   G+ QA
Sbjct: 249 SGRLGIAAVATGLAQA 264

>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With Fad From Bacillus Anthracis Length = 597

Iteration: 1
 Score =  136 bits (343), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 84/252 (33%), Positives = 125/252 (49%), Gaps = 8/252 (3%)
Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXX 91
           F        ++   F    + P    ++Q + F + V L K  G   L G   P+E    
Sbjct: 33  FSSEHKXIAKTTEDFIVNEVLPELEYLEQ-HEFDRSVRLLKEAGELGLLGADVPEEYGGI 91
Query: 92  XXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
                   +  E+ SRA G   +++GAH  +    +V  G+  QK KYLP L +GE + A
Sbjct: 92  GLDKVSSALIAEKFSRAGG-FAITHGAHVGIGSLPIVLFGNEEQKKKYLPLLATGEKLAA 150
Query: 152 LAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG 209
            A++EP +GSD +G K  A     G  Y++NG K W TN   A   +VYAK D     + 
Sbjct: 151 YALTEPGSGSDALGAKTTARLNAEGTHYVLNGEKQWITNSAFADVFIVYAKID----GEH 206
Query: 210 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLD 269
            +AFI+EK   G ST+ +  K G++ S T  L+ E+  VP EN+LG+ GKG  +  + L+
Sbjct: 207 FSAFIVEKDYAGVSTSPEEKKXGIKCSSTRTLILEDALVPKENLLGEIGKGHIIAFNILN 266
Query: 270 LERLVLAAGPLG 281
           + R  L  G +G
Sbjct: 267 IGRYKLGVGTVG 278

>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa Dehydrogenase (acadvl) Length = 607

Iteration: 1
 Score =  135 bits (340), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/261 (31%), Positives = 133/261 (50%), Gaps = 14/261 (5%)
Query: 41  ESVGQFARENIAPRAANIDQSNSFPQDVNL-------WKLMGNFNLHGITAPQEXXXXXX 93
           E   QF +E + P +   ++ N   ++  L       W+ +      G+  P E      
Sbjct: 48  EEQTQFLKELVEPVSRFFEEVNDPAKNDALEMVEETTWQGLKELGAFGLQVPSELGGVGL 107
Query: 94  XXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALA 153
               +   +E +      VG++ GAH ++    ++  G+ AQK+KYLPKL SGE V A  
Sbjct: 108 CNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFC 167
Query: 154 MSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG-- 209
           ++EP++GSD   ++  A     G  Y +NG+K+W +NG +A    V+AKT +   + G  
Sbjct: 168 LTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAV 227
Query: 210 ---ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMS 266
              ITAF++E+G  G +      K+G++ S+T E+ F+   VP+ENVLG+ G G  V M 
Sbjct: 228 KEKITAFVVERGFGGITHGPPEKKMGIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMH 287
Query: 267 GLDLERLVLAAGPLGIMQAPV 287
            L+  R  +AA   G M+  +
Sbjct: 288 ILNNGRFGMAAALAGTMRGII 308

>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain Specificity: Crystal Structure Of Human Very-Long-Chain Acyl-Coa Dehydrogenase Length = 587

Iteration: 1
 Score =  135 bits (340), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 82/261 (31%), Positives = 133/261 (50%), Gaps = 14/261 (5%)
Query: 41  ESVGQFARENIAPRAANIDQSNSFPQDVNL-------WKLMGNFNLHGITAPQEXXXXXX 93
           E   QF +E + P +   ++ N   ++  L       W+ +      G+  P E      
Sbjct: 28  EEQTQFLKELVEPVSRFFEEVNDPAKNDALEMVEETTWQGLKELGAFGLQVPSELGGVGL 87
Query: 94  XXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALA 153
               +   +E +      VG++ GAH ++    ++  G+ AQK+KYLPKL SGE V A  
Sbjct: 88  CNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFC 147
Query: 154 MSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG-- 209
           ++EP++GSD   ++  A     G  Y +NG+K+W +NG +A    V+AKT +   + G  
Sbjct: 148 LTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAV 207
Query: 210 ---ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMS 266
              ITAF++E+G  G +      K+G++ S+T E+ F+   VP+ENVLG+ G G  V M 
Sbjct: 208 KEKITAFVVERGFGGITHGPPEKKMGIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMH 267
Query: 267 GLDLERLVLAAGPLGIMQAPV 287
            L+  R  +AA   G M+  +
Sbjct: 268 ILNNGRFGMAAALAGTMRGII 288

>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase From Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 403

Iteration: 1
 Score =  121 bits (304), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 119/232 (51%), Gaps = 4/232 (1%)
Query: 46  FARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEI 105
           F    IAP+ A  +     P+D++L        L GI  P+E            +  E I
Sbjct: 43  FVEREIAPKLAEWEHVGEIPRDLHL--NAAEVGLLGIGFPEEVGGSGGNAIDSALVTEAI 100
Query: 106 SRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVV 164
             A GS G+     ++ + +  +  +GS A  ++Y+   ++G+ +G+L ++EP AGSDV 
Sbjct: 101 LAAGGSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAGKMIGSLGVTEPGAGSDVA 160
Query: 165 GMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFST 224
            ++ +A R    Y++NG K + T+G  A  +    +T    G  G++  +I+K  PGF  
Sbjct: 161 NLRTRAVREGDTYVVNGAKTFITSGVRADFVTTAVRTG-GPGYGGVSLLVIDKNSPGFEV 219
Query: 225 AQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLA 276
           +++LDK+G R SDT EL F +  VP +N++G E  G   +M     ERL +A
Sbjct: 220 SRRLDKMGWRCSDTAELSFVDVRVPADNLVGAENSGFLQIMQQFQAERLGIA 271

>pdb|3OIB|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase From Mycobacterium Smegmatis, Iodide Soak Length = 403

Iteration: 1
 Score =  117 bits (293), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 125/252 (49%), Gaps = 6/252 (2%)
Query: 27  STSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQ 86
           S S+     +   +++V  FA   + P A   +++   P++++  +      L G   P+
Sbjct: 21  SMSIWTTAEREALRKTVRAFAEREVLPHAHEWERAGEIPRELH--RKAAELGLLGAGFPE 78
Query: 87  EXXXXXXXXXXHCIAMEEISRASGSVGLSYGA--HSNLCINQLVRHGSPAQKDKYLPKLI 144
           +            +  EE+  A GS G  Y +     + +  ++  G     D Y+   +
Sbjct: 79  DAGGSGGDGADPVVICEEMHYA-GSPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTL 137
Query: 145 SGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK 204
            GE +GALA++EP  GSDV  ++ +AD     Y+ING K + T+G  A  +V  A+T   
Sbjct: 138 RGEKIGALAITEPGGGSDVGHLRTRADLDGDHYVINGAKTYITSGVRADYVVTAARTG-G 196
Query: 205 AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVM 264
            G+ G++  +++KG PGF   +KLDK+G R SDT EL + +  VP  N++G E  G   +
Sbjct: 197 PGAGGVSLIVVDKGTPGFEVTRKLDKMGWRSSDTAELSYTDVRVPVANLVGSENTGFAQI 256
Query: 265 MSGLDLERLVLA 276
            +    ER+ LA
Sbjct: 257 AAAFVAERVGLA 268

>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase Complexed With SubstrateLIGAND. Length = 393

Iteration: 1
 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 119/259 (45%), Gaps = 4/259 (1%)
Query: 29  SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEX 88
           S+  ++ Q +F++    FA   +AP  A  DQ   FP DV   +        G+    + 
Sbjct: 16  SMGLNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDV--MRKAAQLGFGGVYIQTDV 73
Query: 89  XXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEH 148
                      +  E ++    S       H N+C   +   G+  Q+ K+ P L + E 
Sbjct: 74  GGSGLSRLDTSVIFEALATGCTSTTAYISIH-NMCAWMIDSFGNEEQRHKFCPPLCTMEK 132
Query: 149 VGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSK 208
             +  ++EP +GSD   +   A +    YI+NG+K + +    +   VV  +T    G K
Sbjct: 133 FASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGESDIYVVMCRTG-GPGPK 191
Query: 209 GITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGL 268
           GI+  ++EKG PG S  +K  K+G     T  ++FE+C VP  N +G EG+G  + + GL
Sbjct: 192 GISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQGFLIAVRGL 251
Query: 269 DLERLVLAAGPLGIMQAPV 287
           +  R+ +A+  LG   A V
Sbjct: 252 NGGRINIASCSLGAAHASV 270

>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From Mycobacterium Smegmatis In Complex With Fadh2 Length = 399

Iteration: 1
 Score =  112 bits (280), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 119/254 (46%), Gaps = 9/254 (3%)
Query: 28  TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQE 87
           T  L D  +     +V QF    + P      +S + P +  L K  GN  + G+   Q 
Sbjct: 22  TDRLLDQDERDIAATVRQFVDTRLKPNVEGWFESATLPSE--LAKEFGNLGVLGMHL-QG 78
Query: 88  XXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE 147
                     + +A  E+               +L +  + R+GS  QK+++LP+L +G+
Sbjct: 79  YGCAGTNAVSYGLACMELEAGDSGFRSFVSVQGSLSMFSIYRYGSEEQKNEWLPRLAAGD 138
Query: 148 HVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGS 207
            +G   ++EP+ GS+  GM+ +A R    +I+NG KMW TNG +A    V+A+TD     
Sbjct: 139 AIGCFGLTEPDFGSNPAGMRTRARRDGSDWILNGTKMWITNGNLADVATVWAQTD----- 193
Query: 208 KGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSG 267
            GI  F++    PGF+  +   KL +R S T ELV +N  +P    L    +G+   +S 
Sbjct: 194 DGIRGFLVPTDTPGFTANEIHRKLSLRASVTSELVLDNVRLPASAQL-PLAEGLSAPLSC 252
Query: 268 LDLERLVLAAGPLG 281
           L+  R  +  G LG
Sbjct: 253 LNEARFGIVFGALG 266

>pdb|2EBA|A Chain A, Crystal Structure Of The Putative Glutaryl-coa Dehydrogenase From Thermus Thermophilus Length = 385

Iteration: 1
 Score =  107 bits (268), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 119/262 (45%), Gaps = 8/262 (3%)
Query: 25  FSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITA 84
           F +   L    + + +++  +F  +   P   +  +   FP   +L          G T 
Sbjct: 4   FYALEDLLTPEEKEVQKAARRFLEKEALPHIRDWWEEGVFP--THLIPRFAELGFLGPTL 61
Query: 85  PQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLI 144
           P E          + +   E+ R    +       S+L +  +  +GS  QK ++LPKL 
Sbjct: 62  PPEYGGAGVSSAAYGLICYELERVDSGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLA 121
Query: 145 SGEHVGALAMSEPNAGSDVVG-MKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDI 203
            GE VG   ++EP+ GSD  G MK +A R    +++NG KMW TNG +A   V++AK + 
Sbjct: 122 RGEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTKMWITNGNLAHLAVIWAKDE- 180
Query: 204 KAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYV 263
                 +  F++    PGF   +   K+ +R S T ELV E   VP E++   +  G+  
Sbjct: 181 ---GGEVLGFLVPTDTPGFQAREVKRKMSLRASVTSELVLEEVRVP-ESLRLPKALGLKA 236
Query: 264 MMSGLDLERLVLAAGPLGIMQA 285
            +S L   R  +A G +G ++A
Sbjct: 237 PLSCLTQARFGIAWGAMGALEA 258

>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 In Complex With Acetoacetyl-Coa Length = 436

Iteration: 1
 Score =  106 bits (264), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 99/186 (53%), Gaps = 6/186 (3%)
Query: 98  HCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEP 157
           + IA  EI+R   S       HS+L +  +   GS AQK+KYLP L     V   A++EP
Sbjct: 118 NAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEP 177
Query: 158 NAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEK 217
           + GSD  G+   A +V+GG+ ING K W  N   A  L+++A+      +  I  FI++K
Sbjct: 178 DNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTT---TNQINGFIVKK 234
Query: 218 GMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSG-LDLERLVLA 276
             PG    +  +K+G+R     +++ +N FVP+E+ L   G   +   S  L + R+++A
Sbjct: 235 DAPGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRL--PGVNSFQDTSKVLAVSRVMVA 292
Query: 277 AGPLGI 282
             P+GI
Sbjct: 293 WQPIGI 298

>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 Length = 449

Iteration: 1
 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 99/186 (53%), Gaps = 6/186 (3%)
Query: 98  HCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEP 157
           + IA  EI+R   S       HS+L +  +   GS AQK+KYLP L     V   A++EP
Sbjct: 118 NAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEP 177
Query: 158 NAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEK 217
           + GSD  G+   A +V+GG+ ING K W  N   A  L+++A+      +  I  FI++K
Sbjct: 178 DNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTT---TNQINGFIVKK 234
Query: 218 GMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSG-LDLERLVLA 276
             PG    +  +K+G+R     +++ +N FVP+E+ L   G   +   S  L + R+++A
Sbjct: 235 DAPGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRL--PGVNSFQDTSKVLAVSRVMVA 292
Query: 277 AGPLGI 282
             P+GI
Sbjct: 293 WQPIGI 298

>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From Mycobacterium Smegmatis Length = 403

Iteration: 1
 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/124 (39%), Positives = 71/124 (57%), Gaps = 5/124 (4%)
Query: 131 GSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGP 190
           GS  QKD++LP + SG  +G   ++EP+ GSD  GM+ +A R    +I+ G KMW TNG 
Sbjct: 127 GSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMRTRATRSGDDWILTGTKMWITNGS 186
Query: 191 VAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPN 250
           VA   VV+A+TD     +GI  F++    PGF+      K+ +R S T ELV +   +P+
Sbjct: 187 VADVAVVWARTD-----EGIRGFVVPTDTPGFTANTIKSKMSLRASVTSELVLDGVRLPD 241
Query: 251 ENVL 254
              L
Sbjct: 242 SARL 245

>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 394

Iteration: 1
 Score =  100 bits (250), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 107/221 (48%), Gaps = 9/221 (4%)
Query: 36  QLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXX 95
           ++  +++   + +E + PR    +++  F +++     MG   + G T            
Sbjct: 20  EILIRDTFRTYCQERLMPRILLANRNEVFHREI--ISEMGELGVLGPTIKGYGCAGVSSV 77
Query: 96  XXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMS 155
               +A  E+ R       +    S+L ++ +  +GS  Q+ KYLP+L  GE +G   ++
Sbjct: 78  AYGLLA-RELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLT 136
Query: 156 EPNAGSDVVGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAF 213
           EPN+GSD   M+ +A  +  +  Y +NG K W TN P+A   VV+A+ +       I  F
Sbjct: 137 EPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCE----DGCIRGF 192
Query: 214 IIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVL 254
           ++EKGM G S  +   K  +R S T  ++ +   VP ENVL
Sbjct: 193 LLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVL 233

>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 392

Iteration: 1
 Score =  100 bits (250), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 107/221 (48%), Gaps = 9/221 (4%)
Query: 36  QLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXX 95
           ++  +++   + +E + PR    +++  F +++     MG   + G T            
Sbjct: 18  EILIRDTFRTYCQERLMPRILLANRNEVFHREI--ISEMGELGVLGPTIKGYGCAGVSSV 75
Query: 96  XXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMS 155
               +A  E+ R       +    S+L ++ +  +GS  Q+ KYLP+L  GE +G   ++
Sbjct: 76  AYGLLA-RELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLT 134
Query: 156 EPNAGSDVVGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAF 213
           EPN+GSD   M+ +A  +  +  Y +NG K W TN P+A   VV+A+ +       I  F
Sbjct: 135 EPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCE----DGCIRGF 190
Query: 214 IIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVL 254
           ++EKGM G S  +   K  +R S T  ++ +   VP ENVL
Sbjct: 191 LLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVL 231

>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa Dehydrogenase On Proton Transfer To The Dienolate Intermediate Length = 394

Iteration: 1
 Score =  100 bits (250), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 107/221 (48%), Gaps = 9/221 (4%)
Query: 36  QLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXX 95
           ++  +++   + +E + PR    +++  F +++     MG   + G T            
Sbjct: 20  EILIRDTFRTYCQERLMPRILLANRNEVFHREI--ISEMGELGVLGPTIKGYGCAGVSSV 77
Query: 96  XXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMS 155
               +A  E+ R       +    S+L ++ +  +GS  Q+ KYLP+L  GE +G   ++
Sbjct: 78  AYGLLA-RELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLT 136
Query: 156 EPNAGSDVVGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAF 213
           EPN+GSD   M+ +A  +  +  Y +NG K W TN P+A   VV+A+ +       I  F
Sbjct: 137 EPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCE----DGCIRGF 192
Query: 214 IIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVL 254
           ++EKGM G S  +   K  +R S T  ++ +   VP ENVL
Sbjct: 193 LLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVL 233

>pdb|3M9V|A Chain A, X-Ray Structure Of A Kijd3 In Complex With Dtdp Length = 439

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 50/86 (58%)
Query: 175 GGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMR 234
           GG++++G K   +  PV    V+ A+TD   G   + + ++ +  PGF+     D LGMR
Sbjct: 161 GGWLLSGRKTLVSMAPVGTHFVINARTDGTDGPPRLASPVVTRDTPGFTVLDNWDGLGMR 220
Query: 235 GSDTCELVFENCFVPNENVLGQEGKG 260
            S T ++VF++C +P ++VL ++  G
Sbjct: 221 ASGTVDIVFDDCPIPADHVLMRDPVG 246

>pdb|3MXL|A Chain A, Crystal Structure Of Nitrososynthase From Micromonospora Carbonacea Var. Africana Length = 395

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 92/211 (43%), Gaps = 13/211 (6%)
Query: 50  NIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXH-CIAMEEISRA 108
            I+  AA+ D++ +FP  V  ++      L G T P E              A+  ++ A
Sbjct: 26  RISAEAADRDRTGTFP--VEAFEQFAKLGLMGATVPAELGGLGLTRLYDVATALMRLAEA 83
Query: 109 SGSVGLSYGAH--SNLCINQLVRHGSP---AQKDKYLPKLISGEHVGALAMSEPNAGSDV 163
             S  L++       L +    +HG+P   A  ++ L  +  GE     A+ +       
Sbjct: 84  DASTALAWHVQLSRGLTLTYEWQHGTPPVRAMAERLLRAMAEGEAAVCGALKDAPG---- 139
Query: 164 VGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFS 223
           V  +  +D   GG++++G K+  +  P+A    V+A+     GS  +   ++ +  PG +
Sbjct: 140 VVTELHSDGA-GGWLLSGRKVLVSMAPIATHFFVHAQRRDDDGSVFLAVPVVHRDAPGLT 198
Query: 224 TAQKLDKLGMRGSDTCELVFENCFVPNENVL 254
                D LGMR S T E+VF+ C V  + +L
Sbjct: 199 VLDNWDGLGMRASGTLEVVFDRCPVRADELL 229

>pdb|1R2J|A Chain A, Fkbi For Biosynthesis Of Methoxymalonyl Extender Unit Of Fk520 Polyketide Immunosuppresant Length = 366

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 8/159 (5%)
Query: 129 RHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGY-IINGNKMWCT 187
           R G   Q+  +L +L SG+ + A+  SE  AGSD+  M+ +  R+DG   +++G+K+W T
Sbjct: 87  RLGDAGQRATFLKELTSGK-LAAVGFSERQAGSDLSAMRTRV-RLDGDTAVVDGHKVWTT 144
Query: 188 NGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCF 247
               A  LVV+   +  +G+      ++    PG    +     G R +   +L  +   
Sbjct: 145 AAAYADHLVVFGLQEDGSGA----VVVVPADTPGVRVERVPKPSGCRAAGHADLHLDQVR 200
Query: 248 VPNENVLGQEGKGVYVMMSG-LDLERLVLAAGPLGIMQA 285
           VP   VL   G  + ++++  L   R  +A G +GI++A
Sbjct: 201 VPAGAVLAGSGASLPMLVAASLAYGRKSVAWGCVGILRA 239

>pdb|3DJL|A Chain A, Crystal Structure Of Alkylation Response Protein E. Coli Aidb Length = 541

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 82/163 (50%), Gaps = 19/163 (11%)
Query: 132 SPAQKDKYLPKLISGEHVGAL----AMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWC 186
           +P   D+Y   L+ G     L     M+E   GSDV+    +A+R+ DG Y + G+K W 
Sbjct: 158 TPLLSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHK-WF 216
Query: 187 TNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMP-GFSTAQKL----DKLGMRGSDTCEL 241
            + P +   +V A+T     + G++ F + + +P G   A +L    DKLG R + +CE+
Sbjct: 217 FSVPQSDAHLVLAQT-----AGGLSCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASCEV 271
Query: 242 VFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQ 284
            F++       +LG EG+G+ +++    + R   A G   +M+
Sbjct: 272 EFQDAI---GWLLGLEGEGIRLILKMGGMTRFDCALGSHAMMR 311

>pdb|2WBI|A Chain A, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11 Length = 428

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 8/142 (5%)
Query: 130 HGSPAQKDKYLPKLISGEHVGALAMSEPN-AGSDVVGMKCKADRVDGGYIINGNKMWCTN 188
           +GS  QK ++L  L+ G       M+EP+ A SD   ++C   R +  Y+ING K W + 
Sbjct: 130 YGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQRDEDSYVINGKKWWSSG 189
Query: 189 G--PVAQTLVVYAKTDIKAGS--KGITAFIIEKGMPGFSTAQKLDKLGMRGS---DTCEL 241
              P  +  +V  +T   + S  K  +  ++    PG    + L   G   +      E+
Sbjct: 190 AGNPKCKIAIVLGRTQNTSLSRHKQHSMILVPMNTPGVKIIRPLSVFGYTDNFHGGHFEI 249
Query: 242 VFENCFVPNENVLGQEGKGVYV 263
            F    VP  N++  EG+G  +
Sbjct: 250 HFNQVRVPATNLILGEGRGFEI 271

>pdb|4DOY|A Chain A, Crystal Structure Of Dibenzothiophene Desulfurization Enzyme C Length = 437

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 7/157 (4%)
Query: 102 MEEISRASGSVGLSYGAH-SNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAG 160
           + EI+ A GS+G  +G H +N  + +L+  GS  Q++    ++         A SE N  
Sbjct: 100 VREIAAADGSLGHLFGYHLTNAPMIELI--GSQEQEEHLYTQIAQNNWWTGNASSENN-- 155
Query: 161 SDVVGMKCKADRV-DGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG-ITAFIIEKG 218
           S V+  K  A    DGGY++NG K +C+    +  L V+      +  +G I A  I   
Sbjct: 156 SHVLDWKVSATPTEDGGYVLNGTKHFCSGAKGSDLLFVFGVVQDDSPQQGAIIAAAIPTS 215
Query: 219 MPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLG 255
             G +       +GMR +D+    F N  V  + VLG
Sbjct: 216 RAGVTPNDDWAAIGMRQTDSGSTDFHNVKVEPDEVLG 252

>pdb|4HR3|A Chain A, Structure Of A Putative Acyl-Coa Dehydrogenase From Mycobacterium Abscessus Length = 415

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 6/143 (4%)
Query: 127 LVRHGSPAQKDKYLPKLISGEHVGALAMSEPN-AGSDVVGMKCKADRVDGGYIINGNKMW 185
           L R+GS  QK+ +L  L+ G+   A  M+EP+ A SD   M   A       +ING K W
Sbjct: 121 LHRYGSQEQKEVWLEPLLEGDIRSAFCMTEPDVASSDATNMAATAVVEGDEVVINGRKWW 180
Query: 186 CT--NGPVAQTLVVYAKTDIKAGSKGITAFI-IEKGMPGFSTAQKLDKLGMRGSDTCELV 242
            T    P  + ++    TD  A      + + +    PG +  + L  +G         V
Sbjct: 181 STGVGHPDCKVIIFMGLTDPNAHRYARHSMVLVPMDTPGITVERMLPTMGFYDEPGGHGV 240
Query: 243 --FENCFVPNENVLGQEGKGVYV 263
             F+N  +P +  +   GKG  +
Sbjct: 241 VSFDNVRLPADAFIAGPGKGFEI 263

>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase From Lycopersicon Esculentum (Tomato) Length = 683

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 18/154 (11%)
Query: 119 HSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA--DRVDGG 176
           H  + I  +   G+  Q++K+LP     + +G  A +E   GS+V G++  A  D     
Sbjct: 121 HWGMFIPAIKGQGTDKQQEKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPQTDE 180
Query: 177 YIIN-----GNKMWCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIE-------KGMPGFS 223
           ++I+      +K W    G V+   VVYA+        G+  FI++       K +PG +
Sbjct: 181 FVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGKDYGVNGFIVQLRSLEDHKPLPGVT 240
Query: 224 TAQKLDKLG---MRGSDTCELVFENCFVPNENVL 254
                 K G       D   L F++  +P + +L
Sbjct: 241 VGDIGMKFGNGAYNSMDNGVLSFDHVRIPRDQML 274

>pdb|2C0U|A Chain A, Crystal Structure Of A Covalent Complex Of Nitroalkane Oxidase Trapped During Substrate Turnover Length = 439

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 52/96 (54%), Gaps = 8/96 (8%)
Query: 100 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE--HVGALAMSEP 157
           I +EE+     +  ++  A + L +  ++   SP+ ++K+L   ISGE   + +L  SEP
Sbjct: 78  IILEELFAVEPATSITIVA-TALGLXPVILCDSPSLQEKFLKPFISGEGEPLASLXHSEP 136
Query: 158 NAGSDVV-----GMKCKADRVDGGYIINGNKMWCTN 188
           N  ++ +     G++  A +V   ++I+G K+W +N
Sbjct: 137 NGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSN 172

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	288
1ivh_A	394	Isovaleryl-COA dehydrogenase; oxidoreductase, acyl	1e-161
3mpi_A	397	Glutaryl-COA dehydrogenase; alpha-beta fold, oxido	1e-148
3m9v_A	439	FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO	1e-134
3mxl_A	395	Nitrososynthase; flavin monooxygenase, acyl-COA de	1e-132
1r2j_A	366	Protein FKBI; polyketide synthase, polyketide, acy	1e-119
2vig_A	391	Short-chain specific acyl-COA dehydrogenase,; fatt	1e-119
3pfd_A	393	Acyl-COA dehydrogenase; structural genomics, seatt	1e-113
2pg0_A	385	Acyl-COA dehydrogenase; GK1316, geobacillus kausto	1e-113
2jif_A	404	Short/branched chain specific acyl-COA dehydrogen;	1e-113
2d29_A	387	Acyl-COA dehydrogenase; structural genomics, NPPSF	1e-112
3r7k_A	403	Probable acyl COA dehydrogenase; ssgcid, structura	1e-112
2dvl_A	372	Acyl-COA dehydrogenase; structural genomics, NPPSF	1e-112
1ukw_A	379	Acyl-COA dehydrogenase; oxidoreductase, riken stru	1e-112
1buc_A	383	Butyryl-COA dehydrogenase; acyl-COA dehydrogenase	1e-111
3p4t_A	403	Putative acyl-COA dehydrogenase; ssgcid, structura	1e-110
3nf4_A	387	Acyl-COA dehydrogenase; seattle structural genomic	1e-110
1egd_A	396	Medium chain acyl-COA dehydrogenase; flavoprotein,	1e-109
1rx0_A	393	Acyl-COA dehydrogenase family member 8, mitochondr	1e-106
3owa_A	597	Acyl-COA dehydrogenase; structural genomics, cente	1e-105
2z1q_A	577	Acyl-COA dehydrogenase; FAD, structural genomics,	1e-104
2uxw_A	607	VERY-long-chain specific acyl-COA dehydrogenase; f	1e-101
2c12_A	439	Nitroalkane oxidase; oxidoreductase, flavoenzyme,	4e-96
3ii9_A	396	Glutaryl-COA dehydrogenase; slipchip, microfluidic	2e-93
3mkh_A	438	Nitroalkane oxidase; oxidoreductase flavoenzyme, a	4e-93
2ix5_A	436	Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4,	2e-90
3swo_A	399	Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d	1e-89
3sf6_A	403	Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB	2e-88
2eba_A	385	Putative glutaryl-COA dehydrogenase; thermus therm	2e-88
1siq_A	392	GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog	1e-82
2ddh_A	661	Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl	4e-46
2jbr_A	422	P-hydroxyphenylacetate hydroxylase C2 oxygenase C;	3e-43
1w07_A	659	Acyl-COA oxidase; oxidoreductase, peroxisomal beta	2e-41
2rfq_A	394	3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1	2e-31
2wbi_A	428	Acyl-COA dehydrogenase family member 11; human, ph	4e-30
3djl_A	541	Protein AIDB; alpha helix, beta-barrel, FAD, flavo	1e-26
3hwc_A	515	Chlorophenol-4-monooxygenase component 2; beta bar	6e-22
2or0_A	414	Hydroxylase; APC7385, rhodococcus SP. RHA1, struct	4e-21
2yyk_A	481	4-hydroxyphenylacetate-3-hydroxylase; structurome,	2e-17
1u8v_A	490	Gamma-aminobutyrate metabolism dehydratase/isomera	2e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05

>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 394

 Score =  451 bits (1164), Expect = e-161
 Identities = 172/256 (67%), Positives = 209/256 (81%), Gaps = 2/256 (0%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGL 91
             + Q Q ++++ +F +E++AP+A  ID+SN F      WK +GN  + GITAP +YGG 
Sbjct: 13  LSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGS 72

Query: 92  GLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
           GLGYL H + MEEISRASG+VGLSYGAHSNLCINQLVR+G+ AQK+KYLPKLISGE++GA
Sbjct: 73  GLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGA 132

Query: 152 LAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA--GSKG 209
           LAMSEPNAGSDVV MK KA++    YI+NGNK W TNGP A  L+VYAKTD+ A   S+G
Sbjct: 133 LAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAAVPASRG 192

Query: 210 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLD 269
           ITAFI+EKGMPGFST++KLDKLGMRGS+TCEL+FE+C +P  N+LG E KGVYV+MSGLD
Sbjct: 193 ITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHENKGVYVLMSGLD 252

Query: 270 LERLVLAAGPLGIMQA 285
           LERLVLA GPLG+MQA
Sbjct: 253 LERLVLAGGPLGLMQA 268

>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A* Length = 397

 Score =  419 bits (1079), Expect = e-148
 Identities = 96/257 (37%), Positives = 139/257 (54%), Gaps = 5/257 (1%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGL 91
                   ++ V  F  + I P A   D  N FP +    + MG     G   P+EYGG 
Sbjct: 5   LSKELQMLQKEVRNFVNKKIVPFADQWDNENHFPYE-EAVRPMGELGFFGTVIPEEYGGE 63

Query: 92  GL--GYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHV 149
           G+  G+L   I  EEI+R S ++ +        C   ++ +GS A K KY+PKL S E +
Sbjct: 64  GMDQGWLAAMIVTEEIARGSSALRVQLNMEVLGCAYTILTYGSEALKKKYVPKLSSAEFL 123

Query: 150 GALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG 209
           G   ++EP+AGSDV+ M   A+     +++NG+K W +N   A  L+ YA TD  AGS+G
Sbjct: 124 GGFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTWISNAAQADVLIYYAYTDKAAGSRG 183

Query: 210 ITAFIIE-KGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGL 268
           ++AF+IE +  PG  T+  L+KLG   S T EL  +N  VP EN+LG+ G G  ++   L
Sbjct: 184 LSAFVIEPRNFPGIKTS-NLEKLGSHASPTGELFLDNVKVPKENILGKPGDGARIVFGSL 242

Query: 269 DLERLVLAAGPLGIMQA 285
           +  RL  AAG +G+ QA
Sbjct: 243 NHTRLSAAAGGVGLAQA 259

>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata} Length = 439

 Score =  386 bits (993), Expect = e-134
 Identities = 63/269 (23%), Positives = 115/269 (42%), Gaps = 8/269 (2%)

Query: 22  SAAFSSTSLLFDDT--QLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNL 79
           +   S+T L    T       + +       I   AA  D+  +FP D   +  +    L
Sbjct: 8   ARQDSTTGLYAPVTPAGRVLLDRLAAHLPR-IRSTAAEHDRDGTFPTD--TFDALRKDGL 64

Query: 80  HGITAPQEYGGLGLGYLYH-CIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDK 138
            G T P E GGLG+  LY   +A+  ++RA  S  L+     +  +          ++ +
Sbjct: 65  MGATVPAELGGLGVDRLYDVAVALLAVARADASTALALHMQLSRGLTLGYEWRHGDERAR 124

Query: 139 YLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVY 198
            L + I    V   A+           +        GG++++G K   +  PV    V+ 
Sbjct: 125 TLAERILRGMVAGDAVVCSGIKDHHTAVTTLRPDGAGGWLLSGRKTLVSMAPVGTHFVIN 184

Query: 199 AKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEG 258
           A+TD   G   + + ++ +  PGF+     D LGMR S T ++VF++C +P ++VL ++ 
Sbjct: 185 ARTDGTDGPPRLASPVVTRDTPGFTVLDNWDGLGMRASGTVDIVFDDCPIPADHVLMRDP 244

Query: 259 KGVY--VMMSGLDLERLVLAAGPLGIMQA 285
            G     +++G  +  + +    +G+ QA
Sbjct: 245 VGARNDAVLAGQTVSSVSVLGVYVGVAQA 273

>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea} Length = 395

 Score =  380 bits (978), Expect = e-132
 Identities = 64/262 (24%), Positives = 113/262 (43%), Gaps = 16/262 (6%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGL 91
                    + +       I+  AA+ D++ +FP +   ++      L G T P E GGL
Sbjct: 9   LTPAGRTVVDLLAGVIPR-ISAEAADRDRTGTFPVE--AFEQFAKLGLMGATVPAELGGL 65

Query: 92  GLGYLYH-CIAMEEISRASGSVGLSYGAH--SNLCINQLVRHGSP---AQKDKYLPKLIS 145
           GL  LY    A+  ++ A  S  L++       L +    +HG+P   A  ++ L  +  
Sbjct: 66  GLTRLYDVATALMRLAEADASTALAWHVQLSRGLTLTYEWQHGTPPVRAMAERLLRAMAE 125

Query: 146 GEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA 205
           GE     A+ +          +  +D   GG++++G K+  +  P+A    V+A+     
Sbjct: 126 GEAAVCGALKDAPGVV----TELHSDG-AGGWLLSGRKVLVSMAPIATHFFVHAQRRDDD 180

Query: 206 GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVL--GQEGKGVYV 263
           GS  +   ++ +  PG +     D LGMR S T E+VF+ C V  + +L  G  G     
Sbjct: 181 GSVFLAVPVVHRDAPGLTVLDNWDGLGMRASGTLEVVFDRCPVRADELLERGPVGARRDA 240

Query: 264 MMSGLDLERLVLAAGPLGIMQA 285
           +++G  +  + +     GI QA
Sbjct: 241 VLAGQTVSSITMLGIYAGIAQA 262

>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1 Length = 366

 Score =  344 bits (885), Expect = e-119
 Identities = 59/242 (24%), Positives = 103/242 (42%), Gaps = 9/242 (3%)

Query: 45  QFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEE 104
               + +  RAA  D S   P+D+     +G   L       E+GGLGLG   +      
Sbjct: 6   ALLTDLVGDRAAEWDTSGELPRDL--LVRLGADGLLCAEVAAEHGGLGLGSRENGEFTAH 63

Query: 105 ISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVV 164
           +     S+  S      +    + R G   Q+  +L +L SG+ + A+  SE  AGSD+ 
Sbjct: 64  VGSLCSSLR-SVMTSQGMAAWTVQRLGDAGQRATFLKELTSGK-LAAVGFSERQAGSDLS 121

Query: 165 GMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFST 224
            M+ +        +++G+K+W T    A  LVV+   +  +G+      ++    PG   
Sbjct: 122 AMRTRVRLDGDTAVVDGHKVWTTAAAYADHLVVFGLQEDGSGA----VVVVPADTPGVRV 177

Query: 225 AQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSG-LDLERLVLAAGPLGIM 283
            +     G R +   +L  +   VP   VL   G  + ++++  L   R  +A G +GI+
Sbjct: 178 ERVPKPSGCRAAGHADLHLDQVRVPAGAVLAGSGASLPMLVAASLAYGRKSVAWGCVGIL 237

Query: 284 QA 285
           +A
Sbjct: 238 RA 239

>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* Length = 391

 Score =  345 bits (887), Expect = e-119
 Identities = 92/254 (36%), Positives = 139/254 (54%), Gaps = 2/254 (0%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGL 91
             +T     ++   FA + + P AA +D+ + FP      K MG   L  +  P+E GG 
Sbjct: 6   LPETHQMLLQTCRDFAEKELFPIAAQVDKEHLFPAAQ--VKKMGGLGLLAMDVPEELGGA 63

Query: 92  GLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
           GL YL + IAMEEISR   S G+    +++L +  +++ GS  QK  ++    SG+ +G 
Sbjct: 64  GLDYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGC 123

Query: 152 LAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGIT 211
            A+SEP  GSD       A      +++NG K W TN   A   VV+A TD    +K I+
Sbjct: 124 FALSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNAWEASAAVVFASTDRALQNKSIS 183

Query: 212 AFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLE 271
           AF++    PG +  +K DKLG+RGS T  L+FE+C +P +++LG+ G G  + M  LD+ 
Sbjct: 184 AFLVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAMQTLDMG 243

Query: 272 RLVLAAGPLGIMQA 285
           R+ +A+  LGI Q 
Sbjct: 244 RIGIASQALGIAQT 257

>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} Length = 393

 Score =  331 bits (852), Expect = e-113
 Identities = 87/254 (34%), Positives = 133/254 (52%), Gaps = 3/254 (1%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGL 91
             +  +  +E++   A + IAP AA +D+   FP++      + +     I  P+EYGG 
Sbjct: 19  LPEEHIALREAIRALAEKEIAPYAAEVDEKARFPEEA--LAALNSSGFSAIHVPEEYGGQ 76

Query: 92  GLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
           G   +  CI +EE++R   S  L    +  L    L+  GS   K + LP + SGE + +
Sbjct: 77  GADSVATCIVIEEVARVDCSASLIPAVNK-LGTMGLILRGSEELKKQVLPAVASGEAMAS 135

Query: 152 LAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGIT 211
            A+SE  AGSD   M+ +A      +I+NG+K W TNG  +    V A TD   G+ GI+
Sbjct: 136 YALSEREAGSDAASMRTRAVADGDDWILNGSKCWITNGGKSTWYTVMAVTDPDKGANGIS 195

Query: 212 AFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLE 271
           AF++ K   GF+   K  KLG++GS T EL FENC +P + ++G+ G G    ++ LD  
Sbjct: 196 AFMVHKDDEGFTVGPKERKLGIKGSPTTELYFENCRIPGDRIIGEPGTGFKTALATLDHT 255

Query: 272 RLVLAAGPLGIMQA 285
           R  + A  +GI Q 
Sbjct: 256 RPTIGAQAVGIAQG 269

>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus} Length = 385

 Score =  330 bits (849), Expect = e-113
 Identities = 85/260 (32%), Positives = 138/260 (53%), Gaps = 5/260 (1%)

Query: 28  TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQE 87
           T+    +    F+ +  +F  +   P   + ++    P+    W  MG          ++
Sbjct: 6   TARYLREEHHMFRAAFRKFLEKEAYPHYNDWEKRGIIPRS--FWAKMGENGFLCPWVDEK 63

Query: 88  YGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE 147
           YGGL   + Y  +  EE+ +  GS  +  G H+++    +  +G+  QK K+LPK ++GE
Sbjct: 64  YGGLNADFAYSVVINEELEKV-GSSLVGIGLHNDIVTPYIASYGTEEQKQKWLPKCVTGE 122

Query: 148 HVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGS 207
            + A+AM+EP AGSD+  +   A +    YI+NG K + TNG  A  +VV  KTD +A  
Sbjct: 123 LITAIAMTEPGAGSDLANISTTAVKDGDYYIVNGQKTFITNGIHADLIVVACKTDPQAKP 182

Query: 208 --KGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMM 265
             +GI+  ++E+  PGF+  +KL+K+G+   DT EL F++  VP  N+LG+EGKG Y +M
Sbjct: 183 PHRGISLLVVERDTPGFTRGRKLEKVGLHAQDTAELFFQDAKVPAYNLLGEEGKGFYYLM 242

Query: 266 SGLDLERLVLAAGPLGIMQA 285
             L  ERLV+A       + 
Sbjct: 243 EKLQQERLVVAIAAQTAAEV 262

>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens} Length = 404

 Score =  330 bits (848), Expect = e-113
 Identities = 91/285 (31%), Positives = 145/285 (50%), Gaps = 6/285 (2%)

Query: 1   MQRLLGARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQ 60
           M                +  +  + +       D ++  K SV +FA+E IAP  + +D+
Sbjct: 1   MHHH--HHHSSGVDLGTENLYFQSMAPLQTF-TDEEMMIKSSVKKFAQEQIAPLVSTMDE 57

Query: 61  SNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHS 120
           ++   + V   + +    L GI    EYGG G  +L   + +EE+++   SV +     +
Sbjct: 58  NSKMEKSV--IQGLFQQGLMGIEVDPEYGGTGASFLSTVLVIEELAKVDASVAVFCEIQN 115

Query: 121 NLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIIN 180
            L    + +HG+  QK  YLP+L + E VG+  +SE  AGSD   +K +AD+    Y++N
Sbjct: 116 TLINTLIRKHGTEEQKATYLPQL-TTEKVGSFCLSEAGAGSDSFALKTRADKEGDYYVLN 174

Query: 181 GNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCE 240
           G+KMW ++   A   +V A  D   G KGIT+F++++  PG    +  +KLG+R S TC 
Sbjct: 175 GSKMWISSAEHAGLFLVMANVDPTIGYKGITSFLVDRDTPGLHIGKPENKLGLRASSTCP 234

Query: 241 LVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQA 285
           L FEN  VP  N+LGQ G G    +  L+  R+ +AA  LG+ Q 
Sbjct: 235 LTFENVKVPEANILGQIGHGYKYAIGSLNEGRIGIAAQMLGLAQG 279

>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A* Length = 387

 Score =  329 bits (845), Expect = e-112
 Identities = 93/258 (36%), Positives = 147/258 (56%), Gaps = 6/258 (2%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGL 91
               + Q      +F +  +AP AA  D++ +FP D+   + +  F + G   P+ YGG 
Sbjct: 7   EGAEERQVLGPFREFLKAEVAPGAAERDRTGAFPWDL--VRKLAEFGVFGALVPEAYGGA 64

Query: 92  GLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
           GL        +E I+   G++ L+  +H++L    ++  GS AQK+ +LPKL SGE +GA
Sbjct: 65  GLSTRLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGA 124

Query: 152 LAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD----IKAGS 207
             ++EP +GSD   +K KA++V+GG+ +NG K + T G VA   VV A+TD     +   
Sbjct: 125 WGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSPERKH 184

Query: 208 KGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSG 267
           +GI+AF   +   G    +K +KLG+  SDT +L+ E+ FVP E +LG+ GKG Y ++  
Sbjct: 185 QGISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDVLRV 244

Query: 268 LDLERLVLAAGPLGIMQA 285
           LD  R+ +AA  +G+ QA
Sbjct: 245 LDGGRIGIAAMAVGLGQA 262

>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus} Length = 403

 Score =  329 bits (847), Expect = e-112
 Identities = 74/271 (27%), Positives = 126/271 (46%), Gaps = 4/271 (1%)

Query: 16  TKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMG 75
             +   +    +        +    +    F    IAP+ A  +     P+D+       
Sbjct: 13  ASEDGAARFVVAPEAWTTPERRALSQMARSFVEREIAPKLAEWEHVGEIPRDL--HLNAA 70

Query: 76  NFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPA 134
              L GI  P+E GG G   +   +  E I  A GS G+     ++ + +  +  +GS A
Sbjct: 71  EVGLLGIGFPEEVGGSGGNAIDSALVTEAILAAGGSTGVCAALFTHGIALPHIAANGSDA 130

Query: 135 QKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQT 194
             ++Y+   ++G+ +G+L ++EP AGSDV  ++ +A R    Y++NG K + T+G  A  
Sbjct: 131 LIERYVRPTLAGKMIGSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTFITSGVRADF 190

Query: 195 LVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVL 254
           +    +T    G  G++  +I+K  PGF  +++LDK+G R SDT EL F +  VP +N++
Sbjct: 191 VTTAVRTG-GPGYGGVSLLVIDKNSPGFEVSRRLDKMGWRCSDTAELSFVDVRVPADNLV 249

Query: 255 GQEGKGVYVMMSGLDLERLVLAAGPLGIMQA 285
           G E  G   +M     ERL +A         
Sbjct: 250 GAENSGFLQIMQQFQAERLGIAVQAYATAGR 280

>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus} Length = 372

 Score =  327 bits (841), Expect = e-112
 Identities = 96/256 (37%), Positives = 147/256 (57%), Gaps = 7/256 (2%)

Query: 30  LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYG 89
           +     Q    ++V + ARE + P A   D+   +P      K +    L G+T P+E+G
Sbjct: 1   MTLTQEQRLVLDAVRRVAREVLYPLAPEYDRKAEYPWPQ--LKALAELGLLGMTTPEEWG 58

Query: 90  GLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHV 149
           G+GL  +   +A+EE++ A  SV +     S L    L+R GS AQK +YL  L  GE +
Sbjct: 59  GVGLDSVTWALALEELAAADPSVAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWI 118

Query: 150 GALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG 209
           GA  ++EP AGSD   ++ +A RV GG+++NG K W T+   A   VV A+T+     KG
Sbjct: 119 GAFCLTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGHAHLYVVMARTE-----KG 173

Query: 210 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLD 269
           I+AF++EKG PG S  +  +K+G+  + T E+  E  FVP EN+LG+EG+G+   ++GLD
Sbjct: 174 ISAFLVEKGTPGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEENLLGEEGRGLAYALAGLD 233

Query: 270 LERLVLAAGPLGIMQA 285
             R+ +AA  +GI + 
Sbjct: 234 SGRVGVAAQAVGIARG 249

>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 Length = 379

 Score =  327 bits (841), Expect = e-112
 Identities = 89/254 (35%), Positives = 137/254 (53%), Gaps = 3/254 (1%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGL 91
             + Q Q +    +FA+E I P A   D+    P  V   + +    L     P+EYGG+
Sbjct: 5   LTEEQRQLQALARRFAKEVILPVAQEYDEKEEVPWPV--IEKLHEVGLLNAIIPEEYGGM 62

Query: 92  GLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
           GL  L   I  EE++ A   +  +    S+L I  ++  G+  QK+++L  L     + A
Sbjct: 63  GLKMLDEVIVGEELAYACMGIY-TIPMASDLGITPVLLAGTEEQKERFLRPLTEKPALAA 121

Query: 152 LAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGIT 211
            A+SEP  GSD   +K +A R    Y++NG KMW +NG  A+ +VV+A  + +   KG+ 
Sbjct: 122 FALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGGEAEWVVVFATVNPELRHKGVV 181

Query: 212 AFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLE 271
           A ++E+G PGF   +   K+G R S T ELVFE+  VP EN LG+EG+G  + M  L+  
Sbjct: 182 ALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGEEGEGFKIAMQTLNKT 241

Query: 272 RLVLAAGPLGIMQA 285
           R+ +AAG +G+ + 
Sbjct: 242 RIPVAAGSVGVARR 255

>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1 Length = 383

 Score =  326 bits (839), Expect = e-111
 Identities = 95/258 (36%), Positives = 148/258 (57%), Gaps = 6/258 (2%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGL 91
             D Q  F +    F  + +AP     D    + +++     + +  + G    ++YGG 
Sbjct: 5   LTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDKEL--IDELLSLGITGAYFEEKYGGS 62

Query: 92  GLG---YLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEH 148
           G      L + +A+EE+++    V ++  A  +LC N + + G+ AQK+K+L  L+ G  
Sbjct: 63  GDDGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTK 122

Query: 149 VGALAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGS 207
           +GA  ++EPNAG+D  G +  A +  DG Y +NG+K++ TNG  A   +V+A TD   G+
Sbjct: 123 LGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKSKGN 182

Query: 208 KGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSG 267
            GITAFI+E G PGF+  +K DK+G+  S T ELVF++  VP EN+LG+EGKG  + M  
Sbjct: 183 HGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIAMMT 242

Query: 268 LDLERLVLAAGPLGIMQA 285
           LD  R+ +AA  LGI +A
Sbjct: 243 LDGGRIGVAAQALGIAEA 260

>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* Length = 403

 Score =  324 bits (834), Expect = e-110
 Identities = 75/258 (29%), Positives = 124/258 (48%), Gaps = 4/258 (1%)

Query: 29  SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEY 88
           S+     +   +++V  FA   + P A   +++   P++  L +      L G   P++ 
Sbjct: 23  SIWTTAEREALRKTVRAFAEREVLPHAHEWERAGEIPRE--LHRKAAELGLLGAGFPEDA 80

Query: 89  GGLGLGYLYHCIAMEEISRASGSVGLSYGA-HSNLCINQLVRHGSPAQKDKYLPKLISGE 147
           GG G       +  EE+  A    G+        + +  ++  G     D Y+   + GE
Sbjct: 81  GGSGGDGADPVVICEEMHYAGSPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGE 140

Query: 148 HVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGS 207
            +GALA++EP  GSDV  ++ +AD     Y+ING K + T+G  A  +V  A+T    G+
Sbjct: 141 KIGALAITEPGGGSDVGHLRTRADLDGDHYVINGAKTYITSGVRADYVVTAARTG-GPGA 199

Query: 208 KGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSG 267
            G++  +++KG PGF   +KLDK+G R SDT EL + +  VP  N++G E  G   + + 
Sbjct: 200 GGVSLIVVDKGTPGFEVTRKLDKMGWRSSDTAELSYTDVRVPVANLVGSENTGFAQIAAA 259

Query: 268 LDLERLVLAAGPLGIMQA 285
              ER+ LA       Q 
Sbjct: 260 FVAERVGLATQAYAGAQR 277

>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Length = 387

 Score =  323 bits (830), Expect = e-110
 Identities = 82/258 (31%), Positives = 140/258 (54%), Gaps = 5/258 (1%)

Query: 28  TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQE 87
             LL      +  E   + A + + P     ++  ++P+ V  ++ +G   L  +  P+E
Sbjct: 12  DRLLPSQEAAELIELTREIADKVLDPIVDRHEKDETYPEGV--FEQLGAAGLLSLPQPEE 69

Query: 88  YGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE 147
           +GG G  Y  +   +EEI+    SV ++   HS L  + L+  G+  QK ++LP ++SGE
Sbjct: 70  WGGGGQPYEVYLQVLEEIAARWASVAVAVSVHS-LSSHPLLVFGTEEQKKRWLPGMLSGE 128

Query: 148 HVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGS 207
            +GA ++SEP AGSD   ++C A   DGGY+ING+K W T+G  A    ++A+T    GS
Sbjct: 129 QIGAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHGGKADFYTLFARTG--EGS 186

Query: 208 KGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSG 267
           +G++ F++    PG S  +  +K+G+    T    ++N  +  +  +G+EG+G+ +  S 
Sbjct: 187 RGVSCFLVPADQPGLSFGKPEEKMGLHAVPTTSAFYDNARIDADRRIGEEGQGLQIAFSA 246

Query: 268 LDLERLVLAAGPLGIMQA 285
           LD  RL +AA   G+ QA
Sbjct: 247 LDSGRLGIAAVATGLAQA 264

>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A* Length = 396

 Score =  322 bits (827), Expect = e-109
 Identities = 94/257 (36%), Positives = 134/257 (52%), Gaps = 6/257 (2%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGL 91
           F + Q +F+ +  +FARE I P AA  D++  +P  +   +      L     P+  GGL
Sbjct: 16  FTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPL--IRRAWELGLMNTHIPENCGGL 73

Query: 92  GLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
           GLG    C+  EE++     V  +   +S L    ++  G+  QK KYL ++     + A
Sbjct: 74  GLGTFDACLISEELAYGCTGVQTAIEGNS-LGQMPIIIAGNDQQKKKYLGRMTEEPLMCA 132

Query: 152 LAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA---GSK 208
             ++EP AGSDV G+K KA++    YIING KMW TNG  A    + A++D       +K
Sbjct: 133 YCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPANK 192

Query: 209 GITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGL 268
             T FI+E   PG    +K   +G R SDT  +VFE+  VP ENVL  +G G  V M   
Sbjct: 193 AFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMGAF 252

Query: 269 DLERLVLAAGPLGIMQA 285
           D ER V+AAG +G+ Q 
Sbjct: 253 DKERPVVAAGAVGLAQR 269

>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 393

 Score =  312 bits (801), Expect = e-106
 Identities = 75/254 (29%), Positives = 121/254 (47%), Gaps = 4/254 (1%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGL 91
            ++ Q +F++    FA   +AP  A  DQ   FP DV   +        G+    + GG 
Sbjct: 19  LNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDV--MRKAAQLGFGGVYIQTDVGGS 76

Query: 92  GLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
           GL  L   +  E ++    S       H N+C   +   G+  Q+ K+ P L + E   +
Sbjct: 77  GLSRLDTSVIFEALATGCTSTTAYISIH-NMCAWMIDSFGNEEQRHKFCPPLCTMEKFAS 135

Query: 152 LAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGIT 211
             ++EP +GSD   +   A +    YI+NG+K + +    +   VV  +T    G KGI+
Sbjct: 136 YCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGESDIYVVMCRTG-GPGPKGIS 194

Query: 212 AFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLE 271
             ++EKG PG S  +K  K+G     T  ++FE+C VP  N +G EG+G  + + GL+  
Sbjct: 195 CIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQGFLIAVRGLNGG 254

Query: 272 RLVLAAGPLGIMQA 285
           R+ +A+  LG   A
Sbjct: 255 RINIASCSLGAAHA 268

>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Length = 597

 Score =  317 bits (814), Expect = e-105
 Identities = 95/287 (33%), Positives = 143/287 (49%), Gaps = 10/287 (3%)

Query: 1   MQRLLGARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQ 60
           M++ +G      SF   +      F  T   F        ++   F    + P    ++Q
Sbjct: 4   MEKTVGNAVKGGSFLVDEITIDQVF--TPEDFSSEHKMIAKTTEDFIVNEVLPELEYLEQ 61

Query: 61  SNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHS 120
              F + V L K  G   L G   P+EYGG+GL  +   +  E+ SRA G   +++GAH 
Sbjct: 62  HE-FDRSVRLLKEAGELGLLGADVPEEYGGIGLDKVSSALIAEKFSRA-GGFAITHGAHV 119

Query: 121 NLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YI 178
            +    +V  G+  QK KYLP L +GE + A A++EP +GSD +G K  A     G  Y+
Sbjct: 120 GIGSLPIVLFGNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKTTARLNAEGTHYV 179

Query: 179 INGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDT 238
           +NG K W TN   A   +VYAK D     +  +AFI+EK   G ST+ +  K+G++ S T
Sbjct: 180 LNGEKQWITNSAFADVFIVYAKID----GEHFSAFIVEKDYAGVSTSPEEKKMGIKCSST 235

Query: 239 CELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQA 285
             L+ E+  VP EN+LG+ GKG  +  + L++ R  L  G +G  + 
Sbjct: 236 RTLILEDALVPKENLLGEIGKGHIIAFNILNIGRYKLGVGTVGSAKR 282

>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Length = 577

 Score =  314 bits (806), Expect = e-104
 Identities = 87/257 (33%), Positives = 134/257 (52%), Gaps = 10/257 (3%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNS-FPQDVNLWKLMGNFNLHGITAPQEYGG 90
           FD++  +   +   F    + P    ++           L +  G   L  I  P+EYGG
Sbjct: 28  FDESVKEIARTTRTFVEREVLPLLERMEHGELELNVP--LMRKAGELGLLAIDVPEEYGG 85

Query: 91  LGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVG 150
           L L  +   +  EE+S  SG   ++YGAH+++    LV  G+  QK KYLPKL SGE + 
Sbjct: 86  LDLPKVISTVVAEELSG-SGGFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASGEWIA 144

Query: 151 ALAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSK 208
           A  ++EP +GSD +  K +A   + G  YI+NG K W +N   A    V+AK D     +
Sbjct: 145 AYCLTEPGSGSDALAAKTRATLSEDGKHYILNGVKQWISNAGFAHLFTVFAKVD----GE 200

Query: 209 GITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGL 268
             TAF++E+  PG S   +  K+G++ S T +++ E+  VP ENVLG+ GKG  +  + L
Sbjct: 201 HFTAFLVERDTPGLSFGPEEKKMGIKASSTRQVILEDVKVPVENVLGEIGKGHKIAFNVL 260

Query: 269 DLERLVLAAGPLGIMQA 285
           ++ R  L AG +G  + 
Sbjct: 261 NVGRYKLGAGAVGGAKR 277

>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Length = 607

 Score =  307 bits (789), Expect = e-101
 Identities = 86/259 (33%), Positives = 133/259 (51%), Gaps = 11/259 (4%)

Query: 34  DTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGL 93
               +  E V +F  E   P  A  D      +    W+ +      G+  P E GG+GL
Sbjct: 52  QFLKELVEPVSRFFEEVNDP--AKNDALEMVEETT--WQGLKELGAFGLQVPSELGGVGL 107

Query: 94  GYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALA 153
               +   +E +      VG++ GAH ++    ++  G+ AQK+KYLPKL SGE V A  
Sbjct: 108 CNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFC 167

Query: 154 MSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG-- 209
           ++EP++GSD   ++  A     G  Y +NG+K+W +NG +A    V+AKT +   + G  
Sbjct: 168 LTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAV 227

Query: 210 ---ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMS 266
              ITAF++E+G  G +      K+G++ S+T E+ F+   VP+ENVLG+ G G  V M 
Sbjct: 228 KEKITAFVVERGFGGITHGPPEKKMGIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMH 287

Query: 267 GLDLERLVLAAGPLGIMQA 285
            L+  R  +AA   G M+ 
Sbjct: 288 ILNNGRFGMAAALAGTMRG 306

>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A* Length = 439

 Score =  289 bits (741), Expect = 4e-96
 Identities = 52/286 (18%), Positives = 107/286 (37%), Gaps = 33/286 (11%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANI----DQSNSFPQDVNLWKLMGNFNLHGITAPQE 87
              +QL+ +     FA   +   +A      DQ + F      ++      L     P  
Sbjct: 6   LSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIP 65

Query: 88  YGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE 147
            GG     ++  I +EE+     +  ++  A + L +  ++   SP+ ++K+L   ISGE
Sbjct: 66  LGGTMESLVHESIILEELFAVEPATSITIVATA-LGLMPVILCDSPSLQEKFLKPFISGE 124

Query: 148 H--VGALAMSEPNAGSDVV-----GMKCKADRVDGGYIINGNKMWCTNG-----PVAQTL 195
              + +L  SEPN  ++ +     G++  A +V   ++I+G K+W +N        A   
Sbjct: 125 GEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLA 184

Query: 196 VVYAKTDIKA---------GSKGITAFIIEKGMPG------FSTAQKLDKLGMRGSDTCE 240
            V  +               +  I   ++ +          +    + +  G   +    
Sbjct: 185 CVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPH 244

Query: 241 LVFENCFVPNENVLGQEGKG-VYVMMSGLDLERLVLAAGPLGIMQA 285
             F    VP+EN+L   G     ++ +   +   ++ A  +G  +A
Sbjct: 245 TRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARA 290

>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A Length = 396

 Score =  280 bits (720), Expect = 2e-93
 Identities = 90/255 (35%), Positives = 136/255 (53%), Gaps = 4/255 (1%)

Query: 31  LFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGG 90
              D +   +++   +A+  +APR     +  +      +++ MG   L G T P++YGG
Sbjct: 18  QLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDAA--IFREMGEIGLLGPTIPEQYGG 75

Query: 91  LGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVG 150
            GL Y+ + +   E+ R            S+L +  +   GS AQK+KYLPKL +GE +G
Sbjct: 76  PGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWIG 135

Query: 151 ALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGI 210
              ++EPN GSD   M  +A +V GGY ++G+KMW TN P+A   VV+AK D + G   I
Sbjct: 136 CFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLD-EDGRDEI 194

Query: 211 TAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDL 270
             FI+EKG  G S      K+G+R S T E+V +  FVP EN+L    KG+    + L+ 
Sbjct: 195 RGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILP-HVKGLRGPFTCLNS 253

Query: 271 ERLVLAAGPLGIMQA 285
            R  +A G LG  ++
Sbjct: 254 ARYGIAWGALGAAES 268

>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina} Length = 438

 Score =  281 bits (721), Expect = 4e-93
 Identities = 57/285 (20%), Positives = 97/285 (34%), Gaps = 35/285 (12%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNS-------FPQDVNLWKLMGNFNLHGITA 84
              +Q    ++    AR  + P      Q            Q    +    +  +     
Sbjct: 7   LSASQKGTYQAARSLARNLLMPARQTYLQHPPNSPLRFQSTQPT--YAAAVSAGILKGQI 64

Query: 85  PQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLI 144
              +GG G   +   I +EE      S  L+  A   L +  +     P Q  ++L   +
Sbjct: 65  SPAHGGTGGTLIESAILVEECYSVEPSAALTIFATG-LGLTPINLAAGP-QHAEFLAPFL 122

Query: 145 SGEH--VGALAMSEPNAGSDVV-----GMKCKADRVDGGYIINGNKMWCTNGPVAQT--- 194
           SGE   + +L  SEP   ++ +     G +  A      ++ING KMW TN         
Sbjct: 123 SGEGSPLASLVFSEPGGVANALEKGAPGFQTTARLEGDEWVINGEKMWATNCAGWDFKGC 182

Query: 195 -----LVVYAKTDIKAGSKGITAFII---------EKGMPGFSTAQKLDKLGMRGSDTCE 240
                +   A T ++ G       +I           G   F   + +   G        
Sbjct: 183 DLACVVCRDATTPLEEGQDPENKVMIILVTRADLDRNGEGSFEVLRHVATPGHTSVSGPH 242

Query: 241 LVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQA 285
           + + N  VP +NVL   G+G  V     D   +++ A  +G+M+A
Sbjct: 243 VRYTNVRVPTKNVLCPAGQGAKVAFGAFDGSAVLVGAMGVGLMRA 287

>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A* Length = 436

 Score =  274 bits (703), Expect = 2e-90
 Identities = 73/255 (28%), Positives = 119/255 (46%), Gaps = 7/255 (2%)

Query: 31  LFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGG 90
           L    +   ++ V +   + +AP      +   FP    +   +G   + G +    YG 
Sbjct: 54  LLTPEEQAIRKKVRECMEKEVAPIMTEYWEKAEFPFH--ITPKLGAMGVAGGSIK-GYGC 110

Query: 91  LGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVG 150
            GL    + IA  EI+R   S       HS+L +  +   GS AQK+KYLP L     V 
Sbjct: 111 PGLSITANAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVA 170

Query: 151 ALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGI 210
             A++EP+ GSD  G+   A +V+GG+ ING K W  N   A  L+++A+      +  I
Sbjct: 171 CWALTEPDNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNT---TTNQI 227

Query: 211 TAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDL 270
             FI++K  PG    +  +K+G+R     +++ +N FVP+E+ L             L +
Sbjct: 228 NGFIVKKDAPGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRLP-GVNSFQDTSKVLAV 286

Query: 271 ERLVLAAGPLGIMQA 285
            R+++A  P+GI   
Sbjct: 287 SRVMVAWQPIGISMG 301

>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis} Length = 399

 Score =  270 bits (694), Expect = 1e-89
 Identities = 75/255 (29%), Positives = 122/255 (47%), Gaps = 9/255 (3%)

Query: 31  LFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGG 90
           L D  +     +V QF    + P      +S + P +  L K  GN  + G+     YG 
Sbjct: 25  LLDQDERDIAATVRQFVDTRLKPNVEGWFESATLPSE--LAKEFGNLGVLGMHLQ-GYGC 81

Query: 91  LGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVG 150
            G   + + +A  E+               +L +  + R+GS  QK+++LP+L +G+ +G
Sbjct: 82  AGTNAVSYGLACMELEAGDSGFRSFVSVQGSLSMFSIYRYGSEEQKNEWLPRLAAGDAIG 141

Query: 151 ALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGI 210
              ++EP+ GS+  GM+ +A R    +I+NG KMW TNG +A    V+A+TD      GI
Sbjct: 142 CFGLTEPDFGSNPAGMRTRARRDGSDWILNGTKMWITNGNLADVATVWAQTD-----DGI 196

Query: 211 TAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDL 270
             F++    PGF+  +   KL +R S T ELV +N  +P    L    +G+   +S L+ 
Sbjct: 197 RGFLVPTDTPGFTANEIHRKLSLRASVTSELVLDNVRLPASAQLP-LAEGLSAPLSCLNE 255

Query: 271 ERLVLAAGPLGIMQA 285
            R  +  G LG  + 
Sbjct: 256 ARFGIVFGALGAARD 270

>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis} Length = 403

 Score =  267 bits (686), Expect = 2e-88
 Identities = 69/255 (27%), Positives = 116/255 (45%), Gaps = 8/255 (3%)

Query: 31  LFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGG 90
           +    + + +++V    +  I P  A+  +    P    L   +G   L G+     YG 
Sbjct: 29  VLSAEEREIRDTVRSVVQRRIKPHIASWYEDGELP-ARELAVELGELGLLGMHLK-GYGC 86

Query: 91  LGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVG 150
            G+  + + +A  E+      +        +L +  +   GS  QKD++LP + SG  +G
Sbjct: 87  AGMSAVAYGLACLELEAGDSGIRSLVSVQGSLAMYAIHAFGSDEQKDQWLPDMASGHRIG 146

Query: 151 ALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGI 210
              ++EP+ GSD  GM+ +A R    +I+ G KMW TNG VA   VV+A+TD     +GI
Sbjct: 147 CFGLTEPDHGSDPAGMRTRATRSGDDWILTGTKMWITNGSVADVAVVWARTD-----EGI 201

Query: 211 TAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDL 270
             F++    PGF+      K+ +R S T ELV +   +P+   L      +   +  L+ 
Sbjct: 202 RGFVVPTDTPGFTANTIKSKMSLRASVTSELVLDGVRLPDSARL-PGATSLGAPLRCLNE 260

Query: 271 ERLVLAAGPLGIMQA 285
            R  +  G LG  + 
Sbjct: 261 ARFGIVFGALGAARD 275

>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus} Length = 385

 Score =  267 bits (685), Expect = 2e-88
 Identities = 75/256 (29%), Positives = 119/256 (46%), Gaps = 8/256 (3%)

Query: 31  LFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGG 90
           L    + + +++  +F  +   P   +  +   FP    L          G T P EYGG
Sbjct: 10  LLTPEEKEVQKAARRFLEKEALPHIRDWWEEGVFPTH--LIPRFAELGFLGPTLPPEYGG 67

Query: 91  LGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVG 150
            G+    + +   E+ R    +       S+L +  +  +GS  QK ++LPKL  GE VG
Sbjct: 68  AGVSSAAYGLICYELERVDSGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLARGEMVG 127

Query: 151 ALAMSEPNAGSDVVG-MKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG 209
              ++EP+ GSD  G MK +A R    +++NG KMW TNG +A   V++AK +       
Sbjct: 128 CFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTKMWITNGNLAHLAVIWAKDE----GGE 183

Query: 210 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLD 269
           +  F++    PGF   +   K+ +R S T ELV E   VP    L  +  G+   +S L 
Sbjct: 184 VLGFLVPTDTPGFQAREVKRKMSLRASVTSELVLEEVRVPESLRLP-KALGLKAPLSCLT 242

Query: 270 LERLVLAAGPLGIMQA 285
             R  +A G +G ++A
Sbjct: 243 QARFGIAWGAMGALEA 258

>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A* Length = 392

 Score =  253 bits (648), Expect = 1e-82
 Identities = 70/257 (27%), Positives = 123/257 (47%), Gaps = 10/257 (3%)

Query: 31  LFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGG 90
                ++  +++   + +E + PR    +++  F ++  +   MG   + G T  + YG 
Sbjct: 13  QLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHRE--IISEMGELGVLGPT-IKGYGC 69

Query: 91  LGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVG 150
            G+  + + +   E+ R       +    S+L ++ +  +GS  Q+ KYLP+L  GE +G
Sbjct: 70  AGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLG 129

Query: 151 ALAMSEPNAGSDVVGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSK 208
              ++EPN+GSD   M+ +A  +  +  Y +NG K W TN P+A   VV+A+ +      
Sbjct: 130 CFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCE----DG 185

Query: 209 GITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGL 268
            I  F++EKGM G S  +   K  +R S T  ++ +   VP ENVL      +      L
Sbjct: 186 CIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVL-PGASSLGGPFGCL 244

Query: 269 DLERLVLAAGPLGIMQA 285
           +  R  +A G LG  + 
Sbjct: 245 NNARYGIAWGVLGASEF 261

>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A* Length = 661

 Score =  163 bits (414), Expect = 4e-46
 Identities = 42/227 (18%), Positives = 76/227 (33%), Gaps = 31/227 (13%)

Query: 85  PQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLI 144
            +EYG            M   +            H  + +  L+   +  Q++++     
Sbjct: 74  MREYGISD-----PEEIMWFKNSVHRGHPEPLDLHLGMFLPTLLHQATAEQQERFFMPAW 128

Query: 145 SGEHVGALAMSEPNAGSDVVGMKCKA--DRVDGGYIING-----NKMWCTN-GPVAQTLV 196
           + E  G  A +E   G+ + G++  A  D     +I+N       K W    G  +   +
Sbjct: 129 NLEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTSIKWWPGGLGKTSNHAI 188

Query: 197 VYAKTDIKAGSKGITAFII-------EKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVP 249
           V A+   +    G+ AF++        K +PG +      K G    D   L  +N  +P
Sbjct: 189 VLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFGYEEMDNGYLKMDNYRIP 248

Query: 250 NENVLGQEGK----GVYV-------MMSGLDLERLVLAAGPLGIMQA 285
            EN+L +  +    G YV           +   R  L       +  
Sbjct: 249 RENMLMKYAQVKPDGTYVKPLSNKLTYGTMVFVRSFLVGNAAQSLSK 295

>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A* Length = 422

 Score =  151 bits (384), Expect = 3e-43
 Identities = 45/266 (16%), Positives = 88/266 (33%), Gaps = 32/266 (12%)

Query: 33  DDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLG 92
           D + +   E + Q   + IA  A + +Q    P +    KL+    LH    P+ YGGL 
Sbjct: 34  DVSGVSMLEKIQQILPQ-IAKNAESAEQLRRVPDEN--IKLLKEIGLHRAFQPKVYGGLE 90

Query: 93  LGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGAL 152
           +        +  ++ A      ++        +Q+       Q + +L            
Sbjct: 91  MSLPDFANCIVTLAGACAGTAWAFSLL-CTHSHQIAMFSKQLQDEIWLK----------- 138

Query: 153 AMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITA 212
                   S  +    K + V+GG I+NG+  W +    A+  +V        G+K  + 
Sbjct: 139 --DPDATASSSIAPFGKVEEVEGGIILNGDYGWSSGCDHAEYAIVGFNRFDADGNKIYSF 196

Query: 213 FIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEG--KGVYVMMSGLDL 270
            +I +    +          ++ S +  L   N F+P   +   +   +G          
Sbjct: 197 GVIPR--SDYEIVDNWYAQAIKSSGSKMLKLVNVFIPEYRISKAKDMMEGKSAGFGLYPD 254

Query: 271 ERL-----------VLAAGPLGIMQA 285
            ++             +A  LGI + 
Sbjct: 255 SKIFYTPYRPYFASGFSAVSLGIAER 280

>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A* Length = 659

 Score =  150 bits (380), Expect = 2e-41
 Identities = 39/205 (19%), Positives = 73/205 (35%), Gaps = 30/205 (14%)

Query: 111 SVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA 170
                   H  + +  +   G+  Q+ K+L      + +G  A +E   GS+V G++  A
Sbjct: 94  DQPAYVDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTA 153

Query: 171 --DRVDGGYIINGNKMWCTN------GPVAQTLVVYAKTDIKAGSKGITAFIIE------ 216
             D     ++I+      +       G V+   VVYA+        GI  FI++      
Sbjct: 154 TLDPKTDEFVIHTPTQTASKWWPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLED 213

Query: 217 -KGMPGFSTAQKLDKLG---MRGSDTCELVFENCFVPNENVLGQEGK----GVYV----- 263
              +P  +      K+G       D   L+F++  +P + +L +  K    G YV     
Sbjct: 214 HSPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQMLMRLSKVTREGEYVPSDVP 273

Query: 264 ---MMSGLDLERLVLAAGPLGIMQA 285
              +   +   R  + A     +  
Sbjct: 274 KQLVYGTMVYVRQTIVADASNALSR 298

>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A Length = 394

 Score =  119 bits (300), Expect = 2e-31
 Identities = 44/250 (17%), Positives = 76/250 (30%), Gaps = 30/250 (12%)

Query: 48  RENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISR 107
              +  RA   +     P D    K +       +  P+++GG     +    A+ +I+ 
Sbjct: 20  LPTLRERAQETEDLRRIPDDS--MKALQETGFFRLLQPEQWGGYQADPVLFYSAVRKIAS 77

Query: 108 ASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMK 167
           A GS G        +    L      AQ+D +      G              S      
Sbjct: 78  ACGSTGWVSSIIG-VHNWHLALFSQQAQEDVW------GNDTDVRI-------SSSYAPM 123

Query: 168 CKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQK 227
                VDGGY +NG   W +    A   V+              +F+I      +     
Sbjct: 124 GAGQVVDGGYTVNGAWAWSSGCDHASWAVLGGPVIKDGRPVDFVSFLI--PREDYRIDDV 181

Query: 228 LDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLER------------LVL 275
            + +G+RG+ +  +V E+ FVP   VL  +                             +
Sbjct: 182 WNVVGLRGTGSNTVVVEDVFVPTHRVLSFKAMSNLTAPGLERNTAPVYKMPWGTIHPTTI 241

Query: 276 AAGPLGIMQA 285
           +A  +G+   
Sbjct: 242 SAPIVGMAYG 251

>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens} Length = 428

 Score =  116 bits (293), Expect = 4e-30
 Identities = 57/261 (21%), Positives = 94/261 (36%), Gaps = 47/261 (18%)

Query: 32  FDDTQLQFKESVGQFARENIAPR-AANIDQSNSFPQDVNLW-------------KLMGNF 77
                 +    V  F +++I P      +        V+ W             K+ G +
Sbjct: 23  QTRKGQEVLIKVKHFMKQHILPAEKEVTEFYVQNENSVDKWGKPLVIDKLKEMAKVEGLW 82

Query: 78  NLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCIN----------QL 127
           NL     P      GL ++ + +  EE        G  + A      N           L
Sbjct: 83  NLF---LP---AVSGLSHVDYALIAEET-------GKCFFAP--DVFNCQAPDTGNMEVL 127

Query: 128 VRHGSPAQKDKYLPKLISGEHVGALAMSEPN-AGSDVVGMKCKADRVDGGYIINGNKMWC 186
             +GS  QK ++L  L+ G       M+EP+ A SD   ++C   R +  Y+ING K W 
Sbjct: 128 HLYGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQRDEDSYVINGKKWWS 187

Query: 187 TN--GPVAQTLVVYAKTDIKAGS--KGITAFIIEKGMPGFSTAQKLDKLGMRGSDT---C 239
           +    P  +  +V  +T   + S  K  +  ++    PG    + L   G   +      
Sbjct: 188 SGAGNPKCKIAIVLGRTQNTSLSRHKQHSMILVPMNTPGVKIIRPLSVFGYTDNFHGGHF 247

Query: 240 ELVFENCFVPNENVLGQEGKG 260
           E+ F    VP  N++  EG+G
Sbjct: 248 EIHFNQVRVPATNLILGEGRG 268

>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A* Length = 541

 Score =  107 bits (270), Expect = 1e-26
 Identities = 46/225 (20%), Positives = 93/225 (41%), Gaps = 30/225 (13%)

Query: 79  LHGITAPQEYGGLGLGYLYHCIAMEEISRASGS-----VGLSYGAHSNL---CINQLVRH 130
           +H +   ++             A   +     +     + +++ A   L           
Sbjct: 100 VHNLAWEEDARSGAFVARA---ARFMLHAQVEAGSLCPITMTFAATPLLLQMLPAPFQDW 156

Query: 131 GSPAQKDKYLPKLISGEH----VGALAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMW 185
            +P   D+Y   L+ G      +  + M+E   GSDV+    +A+R+ DG Y + G+K +
Sbjct: 157 TTPLLSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHKWF 216

Query: 186 CTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMP-----GFSTAQKLDKLGMRGSDTCE 240
            +  P +   +V A+T       G++ F + + +P          +  DKLG R + +CE
Sbjct: 217 FSV-PQSDAHLVLAQTA-----GGLSCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASCE 270

Query: 241 LVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQA 285
           + F++       +LG EG+G+ +++    + R   A G   +M+ 
Sbjct: 271 VEFQDAIG---WLLGLEGEGIRLILKMGGMTRFDCALGSHAMMRR 312

>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia} Length = 515

 Score = 94.2 bits (233), Expect = 6e-22
 Identities = 23/166 (13%), Positives = 42/166 (25%), Gaps = 18/166 (10%)

Query: 138 KYLPKLISGEHVGALAMSEPNAGSDVVGMKCK------ADRVDGGYIINGNKMWCTNGPV 191
            +L  L   +    L   +P         + +       ++ D G I+NG K   T    
Sbjct: 137 NFLKLLREKDLNCPLNFVDPQTDRSSDAAQARSPNLRIVEKTDDGIIVNGVKAVGTGIAF 196

Query: 192 AQTLVVYAKTDIKAGSKGITAFIIEKGMPGFS--------TAQKLDKLGM--RGSDTCEL 241
              + +          + +    I    PG +             +              
Sbjct: 197 GDYMHIGCLYRPGIPGEQVIFAAIPTNTPGVTVFCRESTVKNDPAEHPLASQGDELDSTT 256

Query: 242 VFENCFVPNENVL--GQEGKGVYVMMSGLDLERLVLAAGPLGIMQA 285
           VF+N F+P E V   G             D     +    +   + 
Sbjct: 257 VFDNVFIPWEQVFHIGNPEHAKLYPQRIFDWVHYHILIRQVLRAEL 302

>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP} Length = 414

 Score = 91.3 bits (227), Expect = 4e-21
 Identities = 41/252 (16%), Positives = 77/252 (30%), Gaps = 30/252 (11%)

Query: 48  RENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISR 107
            E I  +A   +             L+ +     +  P+ YGG  +        +  ++ 
Sbjct: 33  AEEIRGQAVQSEADCRLTDAA--AGLLRDSGAIRLLQPRLYGGYEVHPREFAETVMGVAA 90

Query: 108 ASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMK 167
             G+ G   G    +   +L       Q++ +      GE             +      
Sbjct: 91  LDGASGWVTGIV-GVHPWELAFADPQVQEEIW------GEDNDTWM-------ASPYAPM 136

Query: 168 CKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGI--TAFIIEKGMPGFSTA 225
             A  VDGGY++ G   + +     Q   + A      G      +  +I          
Sbjct: 137 GVATPVDGGYVLKGRWSFSSGTDHCQWAFLGAMVGDGEGGIATPSSLHVILPRTDYQIVE 196

Query: 226 QKLDKLGMRGSDTCELVFENCFVPNENVLG----QEGKGVYVMMSGLDLER--------L 273
              D +G+RG+ + +L+ +  FVP    L      +G+          L          L
Sbjct: 197 DTWDVIGLRGTGSKDLIVDGAFVPGYRTLNAAKVMDGRAQKEAGRPEPLFNMPYSCMFPL 256

Query: 274 VLAAGPLGIMQA 285
            + A  +GI + 
Sbjct: 257 GITAAVIGITEG 268

>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A* Length = 481

 Score = 81.0 bits (199), Expect = 2e-17
 Identities = 30/208 (14%), Positives = 59/208 (28%), Gaps = 30/208 (14%)

Query: 108 ASGSVGLSYGAHSNLCINQLVRHGSPAQKDK-------YLPKLISGEHVGALAMSEP--- 157
           A  ++G+   +   L    +    S     +       Y   L   +     A++ P   
Sbjct: 91  ADQNLGMMGRSPDYLNAVVMAYAASADYFGEFAENVRNYYRYLRDQDLATTHALTNPQVN 150

Query: 158 -----NAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITA 212
                +   D         + + G ++ G +M  T     + L+  +        K   A
Sbjct: 151 RARPPSGQPDPYIPVGVVKQTEKGIVVRGARMTATFPLADEVLIFPSILLQAGSEKYALA 210

Query: 213 FIIEKGMPGFSTAQKLDKLGMR-----------GSDTCELVFENCFVPNENVL----GQE 257
           F +    PG     +   +G                 C ++F++  VP E V      + 
Sbjct: 211 FALPTSTPGLHFVCREALVGGDSPFDHPLSSRVEEMDCLVIFDDVLVPWERVFILGNVEL 270

Query: 258 GKGVYVMMSGLDLERLVLAAGPLGIMQA 285
               Y     L+     + A      +A
Sbjct: 271 CNNAYGATGALNHMAHQVVALKTAKTEA 298

>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1 Length = 490

 Score = 80.6 bits (198), Expect = 2e-17
 Identities = 24/219 (10%), Positives = 56/219 (25%), Gaps = 34/219 (15%)

Query: 101 AMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKD--------KYLPKLISGEHVGAL 152
               + + + S                  +    +          +YL  +   + +   
Sbjct: 88  MQRLLGQKTASCFQRCVGMDAFNAVFSTTYEIDQKYGTNYHKNFTEYLKYIQENDLIVDG 147

Query: 153 AMSEPNAGSDVVGMKCK--------ADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK 204
           AM++P     +     K         ++ + G ++ G K   T    +   ++     + 
Sbjct: 148 AMTDPKGDRGLAPSAQKDPDLFLRIVEKREDGIVVRGAKAHQTGSINSHEHIIMPTIAMT 207

Query: 205 AGSKG-ITAFIIEKGMPGFSTAQKLDKLGMR---------------GSDTCELVFENCFV 248
              K    +F       G            R               G     +VF+N F+
Sbjct: 208 EADKDYAVSFACPSDADGLFMIYGRQSCDTRKMEEGADIDLGNKQFGGQEALVVFDNVFI 267

Query: 249 PNENVL--GQEGKGVYVMMSGLDLERLVLAAGPLGIMQA 285
           PN+ +    +      ++       R       +G+   
Sbjct: 268 PNDRIFLCQEYDFAGMMVERFAGYHRQSYGGCKVGVGDV 306

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 5e-05
 Identities = 36/282 (12%), Positives = 73/282 (25%), Gaps = 88/282 (31%)

Query: 16  TKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVN------ 69
             K       S   L   + +  F       +          +     FP   +      
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDR----LS----------V-----FPPSAHIPTILL 392

Query: 70  --LWKLMGNFNLHGITA-----------PQEYGGLGLGYLYHCIAMEEISRASGSVGL-- 114
             +W  +   ++  +             P+E            I +E   +      L  
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES-----TISIPSIYLELKVKLENEYALHR 447

Query: 115 ----SYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSE-----PNAGSDVVG 165
                Y        + L     P   D+Y    I G H+  +   E          D   
Sbjct: 448 SIVDHYNIPKTFDSDDL----IPPYLDQYFYSHI-GHHLKNIEHPERMTLFRMVFLDFRF 502

Query: 166 MKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTA 225
           ++ K        I + +  W  +G +  TL       +K        +I +   P +   
Sbjct: 503 LEQK--------IRHDSTAWNASGSILNTL-----QQLKFYKP----YICDND-PKYE-- 542

Query: 226 QKLDKLGMRGSDTCELVFENCFV-PNENV----LGQEGKGVY 262
           + ++ + +      E   EN       ++    L  E + ++
Sbjct: 543 RLVNAI-LDFLPKIE---ENLICSKYTDLLRIALMAEDEAIF 580

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	288
3pfd_A	393	Acyl-COA dehydrogenase; structural genomics, seatt	100.0
2vig_A	391	Short-chain specific acyl-COA dehydrogenase,; fatt	100.0
2d29_A	387	Acyl-COA dehydrogenase; structural genomics, NPPSF	100.0
3p4t_A	403	Putative acyl-COA dehydrogenase; ssgcid, structura	100.0
1ukw_A	379	Acyl-COA dehydrogenase; oxidoreductase, riken stru	100.0
1buc_A	383	Butyryl-COA dehydrogenase; acyl-COA dehydrogenase	100.0
2jif_A	404	Short/branched chain specific acyl-COA dehydrogen;	100.0
3nf4_A	387	Acyl-COA dehydrogenase; seattle structural genomic	100.0
3r7k_A	403	Probable acyl COA dehydrogenase; ssgcid, structura	100.0
2pg0_A	385	Acyl-COA dehydrogenase; GK1316, geobacillus kausto	100.0
3ii9_A	396	Glutaryl-COA dehydrogenase; slipchip, microfluidic	100.0
1egd_A	396	Medium chain acyl-COA dehydrogenase; flavoprotein,	100.0
1rx0_A	393	Acyl-COA dehydrogenase family member 8, mitochondr	100.0
1ivh_A	394	Isovaleryl-COA dehydrogenase; oxidoreductase, acyl	100.0
3sf6_A	403	Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB	100.0
2dvl_A	372	Acyl-COA dehydrogenase; structural genomics, NPPSF	100.0
3mpi_A	397	Glutaryl-COA dehydrogenase; alpha-beta fold, oxido	100.0
2eba_A	385	Putative glutaryl-COA dehydrogenase; thermus therm	100.0
3swo_A	399	Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d	100.0
2ix5_A	436	Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4,	100.0
4hr3_A	415	Putative acyl-COA dehydrogenase; ssgcid, seattle s	100.0
1siq_A	392	GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog	100.0
3owa_A	597	Acyl-COA dehydrogenase; structural genomics, cente	100.0
1r2j_A	366	Protein FKBI; polyketide synthase, polyketide, acy	100.0
2uxw_A	607	VERY-long-chain specific acyl-COA dehydrogenase; f	100.0
2c12_A	439	Nitroalkane oxidase; oxidoreductase, flavoenzyme,	100.0
2z1q_A	577	Acyl-COA dehydrogenase; FAD, structural genomics,	100.0
3mkh_A	438	Nitroalkane oxidase; oxidoreductase flavoenzyme, a	100.0
3m9v_A	439	FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO	100.0
2wbi_A	428	Acyl-COA dehydrogenase family member 11; human, ph	100.0
3mxl_A	395	Nitrososynthase; flavin monooxygenase, acyl-COA de	100.0
2or0_A	414	Hydroxylase; APC7385, rhodococcus SP. RHA1, struct	100.0
2jbr_A	422	P-hydroxyphenylacetate hydroxylase C2 oxygenase C;	100.0
2rfq_A	394	3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1	100.0
1w07_A	659	Acyl-COA oxidase; oxidoreductase, peroxisomal beta	100.0
3djl_A	541	Protein AIDB; alpha helix, beta-barrel, FAD, flavo	99.98
2ddh_A	661	Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl	99.96
1u8v_A	490	Gamma-aminobutyrate metabolism dehydratase/isomera	99.93
2yyk_A	481	4-hydroxyphenylacetate-3-hydroxylase; structurome,	99.92
3hwc_A	515	Chlorophenol-4-monooxygenase component 2; beta bar	99.88
4g5e_A	517	2,4,6-trichlorophenol 4-monooxygenase; oxidoreduct	99.69

>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile}

Probab=100.00  E-value=3.3e-50  Score=367.39  Aligned_cols=263  Identities=33%  Similarity=0.559  Sum_probs=236.9

Q ss_pred             cccCCCCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHH
Q 023057           22 SAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIA  101 (288)
Q Consensus        22 ~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v  101 (288)
                      +.+.+|++.+++++. ++++.+++|+++.+.+...+.|+.+.+|.  ++|++|++.||+++.+|++|||.|+++.+++.+
T Consensus        10 ~~p~~m~~~~~~e~~-~l~~~~r~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v   86 (393)
T 3pfd_A           10 GNPSFELFQLPEEHI-ALREAIRALAEKEIAPYAAEVDEKARFPE--EALAALNSSGFSAIHVPEEYGGQGADSVATCIV   86 (393)
T ss_dssp             ------------CHH-HHHHHHHHHHHHHTGGGHHHHHHTTCCCH--HHHHHHHHHTCSCTTSCGGGTCCCCCHHHHHHH
T ss_pred             CCCcccCCCCCHHHH-HHHHHHHHHHHHhCchHHHHHhhhCCCCH--HHHHHHHHCCCCCCCCChhHCCCCCCHHHHHHH
Confidence            456678899999999 99999999999999999888999999999  999999999999999999999999999999999


Q ss_pred             HHHHHhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEee
Q 023057          102 MEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIING  181 (288)
Q Consensus       102 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G  181 (288)
                      +|+++++++++++.+..|. .+...+..+|+++|+++|||++.+|+.++|+++|||++|||...+.|+|++++|||+|||
T Consensus        87 ~eela~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG  165 (393)
T 3pfd_A           87 IEEVARVDCSASLIPAVNK-LGTMGLILRGSEELKKQVLPAVASGEAMASYALSEREAGSDAASMRTRAVADGDDWILNG  165 (393)
T ss_dssp             HHHHHTTCHHHHHHHHHHH-HTTHHHHHHCCHHHHHHHHHHHHTTSCCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEE
T ss_pred             HHHHHhhCchHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEEcCCCCCCCcccCeeEEEEcCCEEEEee
Confidence            9999999999998776665 566678889999999999999999999999999999999999999999999999999999


Q ss_pred             EeeeeeCCCCCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccH
Q 023057          182 NKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGV  261 (288)
Q Consensus       182 ~k~~v~~~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~  261 (288)
                      +|.|+||+..||+++|.++++++++..++++|+||++.|||++.++|+++|++++++++|.|+||+||+++++|.++.++
T Consensus       166 ~K~~~s~~~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~Vp~~~~lg~~g~g~  245 (393)
T 3pfd_A          166 SKCWITNGGKSTWYTVMAVTDPDKGANGISAFMVHKDDEGFTVGPKERKLGIKGSPTTELYFENCRIPGDRIIGEPGTGF  245 (393)
T ss_dssp             EEEEEETTTTCSEEEEEEESCGGGGGGGEEEEEEETTSTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHH
T ss_pred             EEEEecCCcccCEEEEEEEeCCCCCCCceEEEEEECCCCCeEecCCCCcccCCCCCceEEEEccEEEcHHHcCCCCCchH
Confidence            99999999999999999998755445678999999999999998999999999999999999999999999999999999


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057          262 YVMMSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       262 ~~~~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      ......++..|+.+++.++|+++++++
T Consensus       246 ~~~~~~l~~~r~~~aa~~~G~a~~al~  272 (393)
T 3pfd_A          246 KTALATLDHTRPTIGAQAVGIAQGALD  272 (393)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998999999999999999999999874

>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A*

Probab=100.00  E-value=3.2e-49  Score=360.65  Aligned_cols=260  Identities=36%  Similarity=0.624  Sum_probs=238.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHH
Q 023057           26 SSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEI  105 (288)
Q Consensus        26 ~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l  105 (288)
                      ||++.+++++. ++++++++|+++.+.+...+.|+.+.+|.  ++|++|++.||+++.+|++|||.|+++.+.+.++|++
T Consensus         1 m~~~~~~~~~~-~l~~~~r~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel   77 (391)
T 2vig_A            1 MQSVELPETHQ-MLLQTCRDFAEKELFPIAAQVDKEHLFPA--AQVKKMGGLGLLAMDVPEELGGAGLDYLAYAIAMEEI   77 (391)
T ss_dssp             -----CCHHHH-HHHHHHHHHHHHHTTTTHHHHHHHTCCCH--HHHHHHHHHTTTSTTSCGGGTSCCCCHHHHHHHHHHH
T ss_pred             CCCCCCCHHHH-HHHHHHHHHHHHhCcccHHHHHhcCCCCH--HHHHHHHHCCCCCCCCCHhhCCCCCCHHHHHHHHHHH
Confidence            57788999999 99999999999999888888888899999  9999999999999999999999999999999999999


Q ss_pred             HhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeee
Q 023057          106 SRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMW  185 (288)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~  185 (288)
                      +++++++++.+..|...+...|..+|+++|+++||+++++|+.++|+++|||++|||...+.|+|++++|||+|||+|.|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~  157 (391)
T 2vig_A           78 SRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAASTTARAEGDSWVLNGTKAW  157 (391)
T ss_dssp             HHHCHHHHHHHHHHHHTTHHHHHHHCCHHHHHHHTGGGSSSSCCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEE
T ss_pred             HhhccHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCCcccceeEEEEeCCEEEEeeEEEe
Confidence            99999988877777435677888999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHHHH
Q 023057          186 CTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMM  265 (288)
Q Consensus       186 v~~~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~~~  265 (288)
                      +||+..||+++|.++++++++++++++|+||++.|||++.+.|+++|++++++++|.|+||+||+++++|.++.++....
T Consensus       158 ~s~~~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~r~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~  237 (391)
T 2vig_A          158 ITNAWEASAAVVFASTDRALQNKSISAFLVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAM  237 (391)
T ss_dssp             EETTTTCSEEEEEEECCSSSTTSCEEEEEEESSCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTBHHHHHH
T ss_pred             ecCCCcCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecCccccccCCCCCeeEEEECcEEECHHHcCCCCCchHHHHH
Confidence            99999999999999986543455789999999999999988999999999999999999999999999999999998888


Q ss_pred             HhhhHHHHHHHHHHHHHhhcccC
Q 023057          266 SGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       266 ~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      ..++..|+..++.++|+++++++
T Consensus       238 ~~l~~~r~~~aa~~~G~a~~al~  260 (391)
T 2vig_A          238 QTLDMGRIGIASQALGIAQTALD  260 (391)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999874

>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A*

Probab=100.00  E-value=4.2e-49  Score=359.40  Aligned_cols=259  Identities=36%  Similarity=0.598  Sum_probs=241.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHH
Q 023057           27 STSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEIS  106 (288)
Q Consensus        27 ~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~  106 (288)
                      |++.+++++. ++++.+++|+++.+.+...+.|+.+.+|.  ++|++|++.||+++.+|++|||.|+++.+.+.++|+++
T Consensus         3 m~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~   79 (387)
T 2d29_A            3 LWFEEGAEER-QVLGPFREFLKAEVAPGAAERDRTGAFPW--DLVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEAIA   79 (387)
T ss_dssp             CTTSCCHHHH-HHHHHHHHHHHHHTGGGHHHHHHHCCCCH--HHHHHHHTTTGGGSSSCGGGTCCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHH-HHHHHHHHHHHHhcchhHHHHhhcCCCCH--HHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHHHH
Confidence            6788999999 99999999999999888888888899999  99999999999999999999999999999999999999


Q ss_pred             hhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeeee
Q 023057          107 RASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWC  186 (288)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v  186 (288)
                      ++++++++.+..|..++...|..+|+++|+++|||++++|+.++|+++|||++|||...+.|+|++++|||+|||+|.|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~  159 (387)
T 2d29_A           80 YYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFI  159 (387)
T ss_dssp             HHCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTSSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEE
T ss_pred             hhChHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEeCCCCCCCCHhhCceEEEEeCCEEEEEeEEecc
Confidence            99999988777774356778889999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCEEEEEEEeCCCC----CCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHH
Q 023057          187 TNGPVAQTLVVYAKTDIKA----GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVY  262 (288)
Q Consensus       187 ~~~~~ad~~lv~a~~~~~~----~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~  262 (288)
                      ||+..||+++|.++++++.    +++++++|+||++.||+++.++|+++|++++++++|+|+||+||++++++.++.++.
T Consensus       160 s~~~~Ad~~~v~a~~~~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~lg~~~~g~~  239 (387)
T 2d29_A          160 TQGSVAGVYVVMARTDPPPSPERKHQGISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKGFY  239 (387)
T ss_dssp             ETTTTCSEEEEEEECSCCSCGGGTTTTEEEEEEECCSSSEEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESSTTBHHH
T ss_pred             CCCCcCCEEEEEEEeCCccccCCCCCCeEEEEEeCCCCCeeccCcccccCCCCCCeeEEEEeeEEECHHHcCCCCCccHH
Confidence            9999999999999986432    445789999999999999988999999999999999999999999999999989998


Q ss_pred             HHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057          263 VMMSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       263 ~~~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      .....++.+|+.+++.++|+++++++
T Consensus       240 ~~~~~l~~~r~~~aa~~~G~a~~al~  265 (387)
T 2d29_A          240 DVLRVLDGGRIGIAAMAVGLGQAALD  265 (387)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888999999999999999999874

>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A*

Probab=100.00  E-value=2.8e-49  Score=362.29  Aligned_cols=262  Identities=28%  Similarity=0.453  Sum_probs=243.0

Q ss_pred             ccCCCCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHH
Q 023057           23 AAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAM  102 (288)
Q Consensus        23 ~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~  102 (288)
                      .+..|++.+++++. ++++.+++|+++.+.+...+.|+.+.+|.  ++|++|++.||+++.+|++|||.|+++.+.+.++
T Consensus        18 ~~~~M~~~~~~e~~-~l~~~~r~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~   94 (403)
T 3p4t_A           18 GPGSMSIWTTAERE-ALRKTVRAFAEREVLPHAHEWERAGEIPR--ELHRKAAELGLLGAGFPEDAGGSGGDGADPVVIC   94 (403)
T ss_dssp             -----CTTSSHHHH-HHHHHHHHHHHHHTTTTHHHHHHHTSCCH--HHHHHHHHTTCTTBTSCGGGTCCBCCTHHHHHHH
T ss_pred             CCCCCCCCCCHHHH-HHHHHHHHHHHHhCchhHHHHhhcCCCCH--HHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHH
Confidence            55668889999999 99999999999999999888899999999  9999999999999999999999999999999999


Q ss_pred             HHHHhhCCch-hhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEee
Q 023057          103 EEISRASGSV-GLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIING  181 (288)
Q Consensus       103 e~l~~~~~~~-~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G  181 (288)
                      |+++++++++ ++.+..|..++...+..+|+++|+++||+++++|+.++|+++|||++|||...+.|++++++|||+|||
T Consensus        95 eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG  174 (403)
T 3p4t_A           95 EEMHYAGSPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGEKIGALAITEPGGGSDVGHLRTRADLDGDHYVING  174 (403)
T ss_dssp             HHHHHTTCCHHHHHHHSTHHHHSHHHHHHTCHHHHHHTHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEE
T ss_pred             HHHHHhCCchhhhHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccceEEEEEeCCEEEEEE
Confidence            9999999998 777777765677788999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeeeeCCCCCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccH
Q 023057          182 NKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGV  261 (288)
Q Consensus       182 ~k~~v~~~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~  261 (288)
                      +|.|+||+..||+++|.++++++ +.+++++|+||.+.|||++.++|+++|++++++++|+|+||+||+++++|..+.++
T Consensus       175 ~K~~vs~a~~Ad~~~v~a~~~~~-~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~Vp~~~~lg~~~~g~  253 (403)
T 3p4t_A          175 AKTYITSGVRADYVVTAARTGGP-GAGGVSLIVVDKGTPGFEVTRKLDKMGWRSSDTAELSYTDVRVPVANLVGSENTGF  253 (403)
T ss_dssp             EEEEEETTTTCSEEEEEEECSSS-SGGGEEEEEEETTCTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHH
T ss_pred             EEEEecCCcccCEEEEEEEeCCC-CCCceEEEEEeCCCCCeEecCCCCcccCCCCCeeEEEEcceEecHHHcCCCCCchH
Confidence            99999999999999999998754 44678999999999999998899999999999999999999999999999999999


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057          262 YVMMSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       262 ~~~~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      ......++.+|+.+++.++|+++++++
T Consensus       254 ~~~~~~l~~~r~~~aa~~~G~a~~al~  280 (403)
T 3p4t_A          254 AQIAAAFVAERVGLATQAYAGAQRCLD  280 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999874

>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1

Probab=100.00  E-value=4e-49  Score=358.57  Aligned_cols=258  Identities=34%  Similarity=0.552  Sum_probs=240.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHH
Q 023057           27 STSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEIS  106 (288)
Q Consensus        27 ~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~  106 (288)
                      |++.+++++. ++++.+++|+++.+.+...+.|+.+.+|.  ++|++|++.||+++.+|++|||.|+++.+.+.++|+++
T Consensus         1 M~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~eel~   77 (379)
T 1ukw_A            1 IDFSLTEEQR-QLQALARRFAKEVILPVAQEYDEKEEVPW--PVIEKLHEVGLLNAIIPEEYGGMGLKMLDEVIVGEELA   77 (379)
T ss_dssp             CBCCCCHHHH-HHHHHHHHHHHHTTGGGHHHHHHHTCCCH--HHHHHHHHTTCTTTTSCGGGTSCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHH-HHHHHHHHHHHHhCchhHHHHhhcCCCCH--HHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHHH
Confidence            5677899999 99999999999999888888888899999  99999999999999999999999999999999999999


Q ss_pred             hhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeeee
Q 023057          107 RASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWC  186 (288)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v  186 (288)
                      ++++++++.+..|. .+...|..+|+++|+++|||++++|+.++|+++|||++|||...+.++|++++|||+|||+|.|+
T Consensus        78 ~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~  156 (379)
T 1ukw_A           78 YACMGIYTIPMASD-LGITPVLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWI  156 (379)
T ss_dssp             HHCHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHGGGTSSSCEEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEE
T ss_pred             HhCchHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCcChhhCeEEEEEeCCEEEEEEEEecc
Confidence            99999988777774 67788889999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHHHHH
Q 023057          187 TNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMS  266 (288)
Q Consensus       187 ~~~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~~~~  266 (288)
                      ||+..||+++|.++++++++++++++|+||.+.||+++.+.|+++|++++++++|.|+||+||+++++|..+.++.....
T Consensus       157 s~~~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~~Gv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~  236 (379)
T 1ukw_A          157 SNGGEAEWVVVFATVNPELRHKGVVALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGEEGEGFKIAMQ  236 (379)
T ss_dssp             ETTTTEEEEEEEEESCGGGGGGGEEEEEEETTCTTEEEEECCCCSSCTTSCEEEEEEEEEEEEGGGEESCTTCHHHHHHH
T ss_pred             cCCCcCCEEEEEEEcCCCCCCCceEEEEEeCCCCCeEecCccccccCCCCCeeEEEEeeEEecHHhcCCCCCchHHHHHH
Confidence            99999999999999864434457899999999999999888999999999999999999999999999998889988888


Q ss_pred             hhhHHHHHHHHHHHHHhhcccC
Q 023057          267 GLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       267 ~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      .++..|+.+++.++|+++++++
T Consensus       237 ~l~~~r~~~aa~~~G~a~~al~  258 (379)
T 1ukw_A          237 TLNKTRIPVAAGSVGVARRALD  258 (379)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999874

>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1

Probab=100.00  E-value=6.4e-49  Score=357.72  Aligned_cols=259  Identities=37%  Similarity=0.621  Sum_probs=242.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCC---CCHHHHHHHHH
Q 023057           27 STSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLG---LGYLYHCIAME  103 (288)
Q Consensus        27 ~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g---~~~~~~~~v~e  103 (288)
                      |++.+++++. ++++.+++|+++.+.+...+.|+.+.+|.  ++|++|++.||+++.+|++|||.|   +++.+.+.++|
T Consensus         1 M~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~~v~e   77 (383)
T 1buc_A            1 MDFNLTDIQQ-DFLKLAHDFGEKKLAPTVTERDHKGIYDK--ELIDELLSLGITGAYFEEKYGGSGDDGGDVLSYILAVE   77 (383)
T ss_dssp             CBCCCCHHHH-HHHHHHHHHHHHTTTTTHHHHHHHTCCCH--HHHHHHHTTSGGGTTSCGGGTCGGGGTCCHHHHHHHHH
T ss_pred             CCCCCCHHHH-HHHHHHHHHHHHhCchhHHHHhhcCCCCH--HHHHHHHHCCCCCCCCChhhCCCCCCCCCHHHHHHHHH
Confidence            5677999999 99999999999999988888888899999  999999999999999999999999   99999999999


Q ss_pred             HHHhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEe-CCeEEEeeE
Q 023057          104 EISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV-DGGYIINGN  182 (288)
Q Consensus       104 ~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~-~~g~~l~G~  182 (288)
                      +++++++++++.+..|..++...+..+|+++|+++|||++++|+.++|+++|||++|||...+.++|+++ +|||+|||+
T Consensus        78 el~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~~g~~lnG~  157 (383)
T 1buc_A           78 ELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGS  157 (383)
T ss_dssp             HHHHHCHHHHHHHHHHHHHTHHHHHHHCCHHHHHHTHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEECTTSCEEEEEE
T ss_pred             HHHhhChHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEeCCCCCCCChhhCEeEEEEcCCCEEEEEEE
Confidence            9999999999877777546678888999999999999999999999999999999999999999999999 999999999


Q ss_pred             eeeeeCCCCCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHH
Q 023057          183 KMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVY  262 (288)
Q Consensus       183 k~~v~~~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~  262 (288)
                      |.|+||+..||+++|.++++++++++++++|+||++.|||++.+.|+++|++++++++|+|+||+||++++++.++.++.
T Consensus       158 K~~~s~~~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~~Gv~v~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~lg~~g~g~~  237 (383)
T 1buc_A          158 KIFITNGGAADIYIVFAMTDKSKGNHGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFK  237 (383)
T ss_dssp             EEEEETTTTCSEEEEEEESCSSSSTTSEEEEEEETTCTTEEEEEECCCSSCTTSCEEEEEEEEEEECGGGEESCTTBHHH
T ss_pred             EeccCCCCcCCEEEEEEEeCCCCCCCceEEEEEECCCCCeEecCccccccccCCceeEEEEccEEeCHHHcCCCCCchHH
Confidence            99999999999999999987544556789999999999999988899999999999999999999999999999889998


Q ss_pred             HHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057          263 VMMSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       263 ~~~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      .....++..|+..++.++|+++++++
T Consensus       238 ~~~~~l~~~r~~~aa~~~G~a~~al~  263 (383)
T 1buc_A          238 IAMMTLDGGRIGVAAQALGIAEAALA  263 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888999999999999999999874

>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}

Probab=100.00  E-value=6.4e-49  Score=359.97  Aligned_cols=260  Identities=34%  Similarity=0.587  Sum_probs=240.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHH
Q 023057           25 FSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEE  104 (288)
Q Consensus        25 ~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~  104 (288)
                      ..|.+.+++++. ++++++++|+++++.|...+.|+.+.+|.  ++|++|++.||+++.+|++|||.|+++.+.+.++|+
T Consensus        23 ~~~~~~~~~e~~-~l~~~~r~~~~~~~~p~~~~~d~~~~~~~--~~~~~l~e~Gl~~l~~P~e~GG~g~~~~~~~~v~ee   99 (404)
T 2jif_A           23 MAPLQTFTDEEM-MIKSSVKKFAQEQIAPLVSTMDENSKMEK--SVIQGLFQQGLMGIEVDPEYGGTGASFLSTVLVIEE   99 (404)
T ss_dssp             -CCTTCCCHHHH-HHHHHHHHHHHHHTGGGHHHHHHHTCCCH--HHHHHHHHTTTTSSSSCGGGTCCCCCHHHHHHHHHH
T ss_pred             ccccCCCCHHHH-HHHHHHHHHHHHhCcccHHHHhhcCCCCH--HHHHHHHHCCCCccCCchhhCCCCCCHHHHHHHHHH
Confidence            356678999999 99999999999999988778888899999  999999999999999999999999999999999999


Q ss_pred             HHhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEee
Q 023057          105 ISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKM  184 (288)
Q Consensus       105 l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~  184 (288)
                      ++++++++++.+..|..++..+|..+|+++|+++|||++.+|. ++|+++|||+.|||...+.|+|++++|||+|||+|.
T Consensus       100 l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~g~-~~~~a~tEp~~Gsd~~~~~t~A~~~g~g~vlnG~K~  178 (404)
T 2jif_A          100 LAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTTEK-VGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKM  178 (404)
T ss_dssp             HHTTCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHHTC-CEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEE
T ss_pred             HHhcCcHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCC-cceEEecCCCCCCChhhceeEEEEeCCEEEEEeEEE
Confidence            9999999998877776566778889999999999999999986 789999999999999999999999999999999999


Q ss_pred             eeeCCCCCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHHH
Q 023057          185 WCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVM  264 (288)
Q Consensus       185 ~v~~~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~~  264 (288)
                      |+||+..||+++|+++++++++.+++++|+||++.|||++.+.|+++|++++++++|.|+||+||+++++|..+.++...
T Consensus       179 ~is~a~~Ad~~~v~ar~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~  258 (404)
T 2jif_A          179 WISSAEHAGLFLVMANVDPTIGYKGITSFLVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYA  258 (404)
T ss_dssp             EEETTTTCSEEEEEEESCGGGGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHH
T ss_pred             eecCCcccCEEEEEEEeCCCCCCCceEEEEEecCCCCeEeccCcccccCCCCceEEEEEccEEECHHHcCCCCCchHHHH
Confidence            99999999999999998644344578999999999999999999999999999999999999999999999998999888


Q ss_pred             HHhhhHHHHHHHHHHHHHhhcccC
Q 023057          265 MSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       265 ~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      ...++.+|+.+++.++|+++++++
T Consensus       259 ~~~l~~~r~~~aa~~~G~a~~al~  282 (404)
T 2jif_A          259 IGSLNEGRIGIAAQMLGLAQGCFD  282 (404)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888999999999999999999874

>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile}

Probab=100.00  E-value=1.7e-48  Score=355.37  Aligned_cols=257  Identities=31%  Similarity=0.592  Sum_probs=241.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHH
Q 023057           26 SSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEI  105 (288)
Q Consensus        26 ~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l  105 (288)
                      ++++.+++++. ++++.+++|+++.+.+...+.|+.+.+|+  ++|++|++.||+++.+|++|||.|+++.+.+.++|++
T Consensus        11 ~~~~~~~~~~~-~l~~~~r~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v~eel   87 (387)
T 3nf4_A           11 VDRLLPSQEAA-ELIELTREIADKVLDPIVDRHEKDETYPE--GVFEQLGAAGLLSLPQPEEWGGGGQPYEVYLQVLEEI   87 (387)
T ss_dssp             CCCCCSSHHHH-HHHHHHHHHHHHHTTTTHHHHHHHTCCCT--THHHHHHTTTTTSTTSCGGGTCCCCCHHHHHHHHHHH
T ss_pred             cccccCCHHHH-HHHHHHHHHHHHhCCccHHHHhhhCCCCH--HHHHHHHHCCCCCCCCCHhhCCCCCCHHHHHHHHHHH
Confidence            34577899999 99999999999999999888999999999  9999999999999999999999999999999999999


Q ss_pred             HhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeee
Q 023057          106 SRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMW  185 (288)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~  185 (288)
                      +++++++++.+..|. ++...+..+|+++|+++|||++++|+.++|+++|||++|||...+.++|++++|||+|||+|.|
T Consensus        88 ~~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~  166 (387)
T 3nf4_A           88 AARWASVAVAVSVHS-LSSHPLLVFGTEEQKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSW  166 (387)
T ss_dssp             HTTCHHHHHHHHHHH-HHTHHHHHHSCHHHHHHHHHHHTTSSCCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEE
T ss_pred             HHhCchHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEEcCCCCCCChhhCEEEEEEeCCEEEEEeEEec
Confidence            999999998888876 6777888999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHHHH
Q 023057          186 CTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMM  265 (288)
Q Consensus       186 v~~~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~~~  265 (288)
                      +||+..||+++|.++++  ++.+++++|+||.+.|||++.+.|+++|++++++++|.|+||+||+++++|..+.++....
T Consensus       167 ~s~~~~Ad~~~v~a~~~--~~~~g~~~flV~~~~pGv~~~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~  244 (387)
T 3nf4_A          167 ITHGGKADFYTLFARTG--EGSRGVSCFLVPADQPGLSFGKPEEKMGLHAVPTTSAFYDNARIDADRRIGEEGQGLQIAF  244 (387)
T ss_dssp             EETTTTCSEEEEEEECC----CCCEEEEEEETTCTTEEECCCCCBSSCCSSCEEEEEEEEEEEEGGGEESSTTCHHHHHH
T ss_pred             ccCCcccCEEEEEEEeC--CCCCceEEEEEECCCCCeEecCcccccccCCCCeeEEEEeeEEecHHHcCCCCCchHHHHH
Confidence            99999999999999986  2445789999999999999988999999999999999999999999999999999999999


Q ss_pred             HhhhHHHHHHHHHHHHHhhcccC
Q 023057          266 SGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       266 ~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      ..++.+|+.+++.++|+++++++
T Consensus       245 ~~l~~~r~~~aa~~~G~a~~al~  267 (387)
T 3nf4_A          245 SALDSGRLGIAAVATGLAQAALD  267 (387)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999874

>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus}

Probab=100.00  E-value=8.7e-49  Score=359.07  Aligned_cols=260  Identities=27%  Similarity=0.466  Sum_probs=241.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHH
Q 023057           25 FSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEE  104 (288)
Q Consensus        25 ~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~  104 (288)
                      ..+++.++++|. ++++.+++|+++++.+...+.|+.+.+|.  ++|++|++.||+++.+|++|||.|+++.+.+.++|+
T Consensus        23 ~~~~~~~~~e~~-~l~~~~r~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~ee   99 (403)
T 3r7k_A           23 VAPEAWTTPERR-ALSQMARSFVEREIAPKLAEWEHVGEIPR--DLHLNAAEVGLLGIGFPEEVGGSGGNAIDSALVTEA   99 (403)
T ss_dssp             --CGGGGCHHHH-HHHHHHHHHHHHHTTTTHHHHHHHTSCCT--HHHHHHHHHTCTTBTSCGGGTCCBCCHHHHHHHHHH
T ss_pred             cCCCCCCCHHHH-HHHHHHHHHHHHhCChhHHHHHhcCCCCH--HHHHHHHhCCCCcCCCChhhCCCCCCHHHHHHHHHH
Confidence            344556899999 99999999999999999888899999999  999999999999999999999999999999999999


Q ss_pred             HHhh-CCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEe
Q 023057          105 ISRA-SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNK  183 (288)
Q Consensus       105 l~~~-~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k  183 (288)
                      ++++ ++++++++..+..++...|..+|+++|+++||+++++|+.++|+++|||++|||...+.|+|++++|||+|||+|
T Consensus       100 la~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K  179 (403)
T 3r7k_A          100 ILAAGGSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAGKMIGSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAK  179 (403)
T ss_dssp             HHHTTCCHHHHHHHCTHHHHSHHHHHHCCHHHHHHHHHHHHTTSCCEEEECCBTTBSSCGGGCCCEEEECSSEEEEEEEE
T ss_pred             HHhcCCchHHHHHHHHhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhceEEEEEECCEEEEEEEE
Confidence            9998 888877776554467788999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeCCCCCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHH
Q 023057          184 MWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYV  263 (288)
Q Consensus       184 ~~v~~~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~  263 (288)
                      .|+||+..||+++|.++++++ +++++++|+||.+.|||++.++|+++|++++++++|+|+||+||++++++..+.++..
T Consensus       180 ~~vs~a~~Ad~~~v~a~~~~~-~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~  258 (403)
T 3r7k_A          180 TFITSGVRADFVTTAVRTGGP-GYGGVSLLVIDKNSPGFEVSRRLDKMGWRCSDTAELSFVDVRVPADNLVGAENSGFLQ  258 (403)
T ss_dssp             EEEETTTTCSEEEEEEECSSS-SGGGEEEEEEETTCTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHH
T ss_pred             EcccCCccCCEEEEEEEcCCC-CCCceEEEEEeCCCCCeEecCcccccCCCCCCceEEEEeeEEECHHHcCCCCCchHHH
Confidence            999999999999999998754 4557899999999999999889999999999999999999999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHHHHhhcccC
Q 023057          264 MMSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       264 ~~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      ....++.+|+.+++.++|+++++++
T Consensus       259 ~~~~l~~~r~~~aa~~~G~a~~al~  283 (403)
T 3r7k_A          259 IMQQFQAERLGIAVQAYATAGRALD  283 (403)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999874

>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus}

Probab=100.00  E-value=2.1e-48  Score=354.53  Aligned_cols=258  Identities=32%  Similarity=0.590  Sum_probs=238.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHH
Q 023057           26 SSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEI  105 (288)
Q Consensus        26 ~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l  105 (288)
                      |.++.+++++. ++++++++|+++.+.+...+.|+.+.+|.  ++|++|++.||+++.+|++|||.|+++.+.+.++|++
T Consensus         5 m~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel   81 (385)
T 2pg0_A            5 MTARYLREEHH-MFRAAFRKFLEKEAYPHYNDWEKRGIIPR--SFWAKMGENGFLCPWVDEKYGGLNADFAYSVVINEEL   81 (385)
T ss_dssp             -CCTTCCHHHH-HHHHHHHHHHHHHTTTTHHHHHHHTSCCH--HHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHHHH
T ss_pred             cCCCCCCHHHH-HHHHHHHHHHHHhCchhHHHHHhcCCCCH--HHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHH
Confidence            44478999999 99999999999999988888888899999  9999999999999999999999999999999999999


Q ss_pred             HhhC-CchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEee
Q 023057          106 SRAS-GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKM  184 (288)
Q Consensus       106 ~~~~-~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~  184 (288)
                      ++++ +++++.+  |...+...+..+|+++|+++|||++++|+.++|+++|||++|||...+.|+|++++|||+|||+|.
T Consensus        82 a~~~~~~~~~~~--~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~  159 (385)
T 2pg0_A           82 EKVGSSLVGIGL--HNDIVTPYIASYGTEEQKQKWLPKCVTGELITAIAMTEPGAGSDLANISTTAVKDGDYYIVNGQKT  159 (385)
T ss_dssp             HHHCGGGHHHHH--HHHTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEE
T ss_pred             HhhCCchHHHHH--HhhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCcCHhhCeEEEEEcCCEEEEEeEEe
Confidence            9999 8887755  544567788899999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeCCCCCCEEEEEEEeCCC--CCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHH
Q 023057          185 WCTNGPVAQTLVVYAKTDIK--AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVY  262 (288)
Q Consensus       185 ~v~~~~~ad~~lv~a~~~~~--~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~  262 (288)
                      |+||+..||+++|.++++++  ++++++++|+||++.||+++.++|+++|++++++++|+|+||+||++++++.++.++.
T Consensus       160 ~~s~~~~Ad~~~v~a~~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~~~~~~~~v~fd~v~Vp~~~~lg~~g~g~~  239 (385)
T 2pg0_A          160 FITNGIHADLIVVACKTDPQAKPPHRGISLLVVERDTPGFTRGRKLEKVGLHAQDTAELFFQDAKVPAYNLLGEEGKGFY  239 (385)
T ss_dssp             EETTTTTCSEEEEEEESCTTCSSGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCCEEEEEEEEEEEGGGEESCTTCHHH
T ss_pred             cccCCcccCEEEEEEEeCCccCCCCCceEEEEEeCCCCCeEecCCccccccCCCceEEEEEcceEEcHHHcCCCCCchHH
Confidence            99999999999999998643  2344789999999999999988899999999999999999999999999999999998


Q ss_pred             HHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057          263 VMMSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       263 ~~~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      .....++..|+..++.++|+++++++
T Consensus       240 ~~~~~l~~~r~~~aa~~~G~a~~al~  265 (385)
T 2pg0_A          240 YLMEKLQQERLVVAIAAQTAAEVMFS  265 (385)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888999999999999999999874

>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A

Probab=100.00  E-value=4e-49  Score=360.56  Aligned_cols=264  Identities=35%  Similarity=0.587  Sum_probs=238.6

Q ss_pred             cccccCCCCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHH
Q 023057           20 KHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHC   99 (288)
Q Consensus        20 ~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~   99 (288)
                      .+..+.+|++.++++|. ++++++++|+++++.+...+.|+.+.+|.  ++|++|++.||+++.+|++|||.|+++.+.+
T Consensus         8 ~~~~~~~m~~~~~~e~~-~l~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~   84 (396)
T 3ii9_A            8 HWDDPLLLDQQLADDER-MVRDAAHAYAQGKLAPRVTEAFRHETTDA--AIFREMGEIGLLGPTIPEQYGGPGLDYVSYG   84 (396)
T ss_dssp             CTTSTTCGGGGSCHHHH-HHHHHHHHHCCCCCHHHHHHHHHHTCCCT--HHHHHHHHTTCSSTTSCGGGTSCCCCHHHHH
T ss_pred             CCCcccccCCCCCHHHH-HHHHHHHHHHHHhCChhHHHHHhhCCCCH--HHHHHHHhCCCCCCCCChhhCCCCCCHHHHH
Confidence            45667788899999999 99999999999999888888899999999  9999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEE
Q 023057          100 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYII  179 (288)
Q Consensus       100 ~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l  179 (288)
                      .++|+++++++++++.+..|...+...|..+|+++|+++|||++++|+.++|+++|||++|||...+.|+|++++|||+|
T Consensus        85 ~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~l  164 (396)
T 3ii9_A           85 LIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSL  164 (396)
T ss_dssp             HHHHHHHTTCHHHHHHHHCCCCCCCHHHHHHSCHHHHHHHHHHHHHTSSCEEEECCCCC------CCCCEEEEETTEEEE
T ss_pred             HHHHHHHHhChhHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCChhhCeeEEEEeCCEEEE
Confidence            99999999999988877777545567788999999999999999999999999999999999999999999999999999


Q ss_pred             eeEeeeeeCCCCCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCc
Q 023057          180 NGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGK  259 (288)
Q Consensus       180 ~G~k~~v~~~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~  259 (288)
                      ||+|.|+||+..||+++|.+++++ ++.+++++|+||++.|||++.+.|+++|++++++++|+|+||+||++++++. +.
T Consensus       165 nG~K~~vs~a~~Ad~~~v~a~~~~-~g~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~Vp~~~~l~~-~~  242 (396)
T 3ii9_A          165 SGSKMWITNSPIADVFVVWAKLDE-DGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPH-VK  242 (396)
T ss_dssp             EEEEEEEETGGGCSEEEEEEEEEE-TTEEEEEEEEEETTCTTEECCBCCCCSSCTTSCEEEEEEEEEEEEGGGBCTT-CC
T ss_pred             EEEEEeECCCccCCEEEEEEEecC-CCCCceEEEEEecCCCCeEeccccccccCCcCCeeEEEEccEEECHHHccCC-Ch
Confidence            999999999999999999999862 2334688999999999999999999999999999999999999999999976 77


Q ss_pred             cHHHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057          260 GVYVMMSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       260 ~~~~~~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      ++......++..|+.+++.++|+++++++
T Consensus       243 g~~~~~~~l~~~r~~~aa~~~G~a~~al~  271 (396)
T 3ii9_A          243 GLRGPFTCLNSARYGIAWGALGAAESCWH  271 (396)
T ss_dssp             STHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888899999999999999999999874

>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A*

Probab=100.00  E-value=2.5e-48  Score=355.25  Aligned_cols=259  Identities=36%  Similarity=0.565  Sum_probs=239.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHH
Q 023057           26 SSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEI  105 (288)
Q Consensus        26 ~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l  105 (288)
                      .|++.+++++. ++++++++|+++.+.+...+.|+.+.+|.  ++|++|++.||+++.+|++|||.|+++.+.+.++|++
T Consensus        11 ~m~~~~~~~~~-~l~~~~r~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel   87 (396)
T 1egd_A           11 GFSFEFTEQQK-EFQATARKFAREEIIPVAAEYDKTGEYPV--PLIRRAWELGLMNTHIPENCGGLGLGTFDACLISEEL   87 (396)
T ss_dssp             EEECCCCHHHH-HHHHHHHHHHHHHTHHHHHHHHHHCCCCH--HHHHHHHHHTCSSTTSCGGGTSCCCCHHHHHHHHHHH
T ss_pred             cCCCCCCHHHH-HHHHHHHHHHHHhCchhHHHHHhhCCCCH--HHHHHHHHCCCCCCCCchhhCCCCCCHHHHHHHHHHH
Confidence            36678999999 99999999999988888888888899999  9999999999999999999999999999999999999


Q ss_pred             HhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeee
Q 023057          106 SRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMW  185 (288)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~  185 (288)
                      +++++++++.+ .|..++...|..+|+++|+++|||++++|+.++|+++|||++|||...+.++|++++|||+|||+|.|
T Consensus        88 ~~~~~~~~~~~-~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~  166 (396)
T 1egd_A           88 AYGCTGVQTAI-EGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMW  166 (396)
T ss_dssp             HHHCHHHHHHH-HHHHHHTHHHHHHCCHHHHHHHHHHHHHSCCCEEEECCBTTBSSSGGGCCCEEEECSSEEEEEEEEEE
T ss_pred             HhhCccHHHHH-HhhhHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCcchhhCeeEEEEeCCEEEEEEEEEc
Confidence            99999998876 56545566688999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCCEEEEEEEeCCCCCC---CceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHH
Q 023057          186 CTNGPVAQTLVVYAKTDIKAGS---KGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVY  262 (288)
Q Consensus       186 v~~~~~ad~~lv~a~~~~~~~~---~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~  262 (288)
                      +||+..||+++|.++++++.+.   .++++|+||.+.|||++.++|+++|++++++++|+|+||+||+++++|.++.++.
T Consensus       167 ~s~~~~Ad~~~v~a~~~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~  246 (396)
T 1egd_A          167 ITNGGKANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFK  246 (396)
T ss_dssp             EETTTTCSEEEEEEECCCCTTSCGGGTEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGBSSSTTBHHH
T ss_pred             ccCCcccCEEEEEEEeCCCCCCCCCCCeEEEEEeCCCCCeeeCCccccccccCCCeeEEEECcEEECHHHcCCCCCccHH
Confidence            9999999999999998654333   5788999999999999988999999999999999999999999999999999998


Q ss_pred             HHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057          263 VMMSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       263 ~~~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      .....++..|+.+++.++|+++++++
T Consensus       247 ~~~~~l~~~r~~~aa~~~G~a~~al~  272 (396)
T 1egd_A          247 VAMGAFDKERPVVAAGAVGLAQRALD  272 (396)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888999999999999999999874

>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1

Probab=100.00  E-value=1.1e-47  Score=350.59  Aligned_cols=257  Identities=28%  Similarity=0.513  Sum_probs=239.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHH
Q 023057           27 STSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEIS  106 (288)
Q Consensus        27 ~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~  106 (288)
                      |++.+++++. ++++++++|+++.+.|...++|+.+.+|.  ++|++|++.||+++.+|++|||.|+++.+.+.++|+++
T Consensus        15 ~~~~~~~e~~-~~~~~~r~~~~~~~~~~~~~~d~~~~~p~--~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela   91 (393)
T 1rx0_A           15 PSMGLNEEQK-EFQKVAFDFAAREMAPNMAEWDQKELFPV--DVMRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFEALA   91 (393)
T ss_dssp             TTTTCCHHHH-HHHHHHHHHHHHHTHHHHHHHHHHTCCCH--HHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHH-HHHHHHHHHHHHhCCccHHHHhhcCCCCH--HHHHHHHhCCCCcCCCChhhCCCCCCHHHHHHHHHHHH
Confidence            4567899999 99999999999999888888888899999  99999999999999999999999999999999999999


Q ss_pred             hhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeeee
Q 023057          107 RASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWC  186 (288)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v  186 (288)
                      ++++++++.+..|. .+...+..+|+++|+++|||++++|+.++|+++|||+.|||...+.|+|++++|||+|||+|.|+
T Consensus        92 ~~~~~~~~~~~~~~-~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~i  170 (393)
T 1rx0_A           92 TGCTSTTAYISIHN-MCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFI  170 (393)
T ss_dssp             TTCHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEE
T ss_pred             HhCcchhHHHHHhH-HHHHHHHHHCCHHHHHHHHHHHhCCCceEEEEecCCCCCcCcccceeEEEEcCCEEEEEeEEEee
Confidence            99999887777776 66778889999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHHHHH
Q 023057          187 TNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMS  266 (288)
Q Consensus       187 ~~~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~~~~  266 (288)
                      ||+..||+++|++++++ ++++++++|+||.+.|||++.+.++++|++++++++|+|+||+||+++++|..+.++.....
T Consensus       171 s~a~~Ad~~~v~a~~~~-~~~~g~~~flV~~~~pGv~v~~~~~~~g~~~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~~  249 (393)
T 1rx0_A          171 SGAGESDIYVVMCRTGG-PGPKGISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQGFLIAVR  249 (393)
T ss_dssp             ETTTTCSEEEEEEESSS-SSGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHH
T ss_pred             cCCccCCEEEEEEEcCC-CCCCceEEEEEeCCCCCeEecCcccccccCCCCceEEEEcCeEeCHHHcCCCCCchHHHHHH
Confidence            99999999999999864 23457899999999999999888999999999999999999999999999998889988888


Q ss_pred             hhhHHHHHHHHHHHHHhhcccC
Q 023057          267 GLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       267 ~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      .++..|+.+++.++|+++++++
T Consensus       250 ~l~~~r~~~aa~~~G~a~~al~  271 (393)
T 1rx0_A          250 GLNGGRINIASCSLGAAHASVI  271 (393)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999999999874

>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1

Probab=100.00  E-value=6.2e-48  Score=352.43  Aligned_cols=259  Identities=66%  Similarity=1.101  Sum_probs=240.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhh
Q 023057           29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA  108 (288)
Q Consensus        29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~~~  108 (288)
                      +.+++++. ++++++++|+++.+.+...+.|+.+.+|...++|++|++.||+++.+|++|||.|+++.+.+.++|+++++
T Consensus        11 ~~~~~e~~-~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eel~~~   89 (394)
T 1ivh_A           11 NGLSEEQR-QLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRA   89 (394)
T ss_dssp             GTCCHHHH-HHHHHHHHHHHHHTTTTHHHHHHHTCCTTHHHHHHHHHHHTCTTTTSCGGGTCCCCCHHHHHHHHHHHHHH
T ss_pred             cCCCHHHH-HHHHHHHHHHHHhCChhHHHHHhcCCCCchHHHHHHHHHCCCCCCCCCcccCCCCCCHHHHHHHHHHHHhh
Confidence            46899999 99999999999999988778888888887557999999999999999999999999999999999999999


Q ss_pred             CCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeeeeeC
Q 023057          109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTN  188 (288)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v~~  188 (288)
                      ++++++.+..|..++...+..+|+++|+++|||++++|+.++|+++|||++|||...+.++|++++|||+|||+|.|+||
T Consensus        90 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~vs~  169 (394)
T 1ivh_A           90 SGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITN  169 (394)
T ss_dssp             CHHHHHHHHHHHTTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECSSEEEEEEEEEEEET
T ss_pred             chhHHHHHHHhhHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCcCcccceEEEEEcCCEEEEEeEEEeeCC
Confidence            99999888877545677888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCC--CCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHHHHH
Q 023057          189 GPVAQTLVVYAKTDIK--AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMS  266 (288)
Q Consensus       189 ~~~ad~~lv~a~~~~~--~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~~~~  266 (288)
                      +..||+++|.++++++  +++.++++|+||++.|||++.+.|+++|++++++++|+|+||+||+++++|..+.++.....
T Consensus       170 ~~~Ad~~~v~ar~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~  249 (394)
T 1ivh_A          170 GPDADVLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHENKGVYVLMS  249 (394)
T ss_dssp             GGGCSEEEEEEESCTTCSSGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESCTTCHHHHHHH
T ss_pred             CCcCCEEEEEEEeCCcccCCCCCeEEEEEeCCCCCeEeccccccccCCCCCeeEEEECcEEEcHHHcCCCCCchHHHHHH
Confidence            9999999999998643  23357899999999999999999999999999999999999999999999999999988888


Q ss_pred             hhhHHHHHHHHHHHHHhhcccC
Q 023057          267 GLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       267 ~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      .++..|+..++.++|+++++++
T Consensus       250 ~l~~~r~~~aa~~~G~a~~al~  271 (394)
T 1ivh_A          250 GLDLERLVLAGGPLGLMQAVLD  271 (394)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999874

>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis}

Probab=100.00  E-value=7e-48  Score=353.06  Aligned_cols=255  Identities=27%  Similarity=0.507  Sum_probs=240.9

Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCC-CcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHH
Q 023057           24 AFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFP-QDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAM  102 (288)
Q Consensus        24 ~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~  102 (288)
                      .+.|++.+++++. ++++.+++|+++++.+...+.|+.+.+| .  ++|++|++.||+++.+ ++|||.|+++.+.+.++
T Consensus        23 ~~~m~~~l~~e~~-~l~~~~r~~~~~~~~~~~~~~~~~~~~p~~--~~~~~l~~~Gl~~l~~-~e~GG~g~~~~~~~~v~   98 (403)
T 3sf6_A           23 LIGINAVLSAEER-EIRDTVRSVVQRRIKPHIASWYEDGELPAR--ELAVELGELGLLGMHL-KGYGCAGMSAVAYGLAC   98 (403)
T ss_dssp             HHTCGGGSCHHHH-HHHHHHHHHHHHHTTTTHHHHHHHTCCCHH--HHHHHHHHTTCSSTTS-CSTTCCCCCHHHHHHHH
T ss_pred             hhccCCCCCHHHH-HHHHHHHHHHHHhcChhHHHHHhcCCCCHH--HHHHHHHHCCCCcccc-hhhCCCCCCHHHHHHHH
Confidence            3568889999999 9999999999999999888889999999 9  9999999999999999 99999999999999999


Q ss_pred             HHHHhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeE
Q 023057          103 EEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGN  182 (288)
Q Consensus       103 e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~  182 (288)
                      |+++++++++++.+..|..++...+..+|+++|+++|||++++|+.++|+++|||++|||...+.|+|++++|||+|||+
T Consensus        99 eela~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~  178 (403)
T 3sf6_A           99 LELEAGDSGIRSLVSVQGSLAMYAIHAFGSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMRTRATRSGDDWILTGT  178 (403)
T ss_dssp             HHHHHHCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEE
T ss_pred             HHHHHhcccHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEEccCCCCCCchhcEEEEEEECCEEEEEEE
Confidence            99999999988888777656678899999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeeCCCCCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHH
Q 023057          183 KMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVY  262 (288)
Q Consensus       183 k~~v~~~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~  262 (288)
                      |.|+||+..||+++|.+++++     ++++|+||.+.|||++.+.|+++|++++++++|+|+||+||++++++. +.++.
T Consensus       179 K~~is~a~~Ad~~~v~ar~~~-----g~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~fd~v~Vp~~~~lg~-~~g~~  252 (403)
T 3sf6_A          179 KMWITNGSVADVAVVWARTDE-----GIRGFVVPTDTPGFTANTIKSKMSLRASVTSELVLDGVRLPDSARLPG-ATSLG  252 (403)
T ss_dssp             EEEEETGGGCSEEEEEEEETT-----EEEEEEEETTSTTEEEEECCSCSSCTTSCEEEEEEEEEEEEGGGBCTT-CCSTH
T ss_pred             EEeecCCcccCEEEEEEEeCC-----ceEEEEEECCCCCeEecCCCCccCCCCCceeEEEEccEEEcHHHccCC-ChhHH
Confidence            999999999999999999863     689999999999999999999999999999999999999999999998 78888


Q ss_pred             HHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057          263 VMMSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       263 ~~~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      .....++.+|+.+++.++|+++++++
T Consensus       253 ~~~~~l~~~r~~~aa~~~G~a~~al~  278 (403)
T 3sf6_A          253 APLRCLNEARFGIVFGALGAARDCLE  278 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999874

>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus}

Probab=100.00  E-value=8.2e-48  Score=349.13  Aligned_cols=251  Identities=38%  Similarity=0.655  Sum_probs=235.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhC
Q 023057           30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRAS  109 (288)
Q Consensus        30 ~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~~~~  109 (288)
                      .+++|+. ++++++++|+++.+.+...+.|+.+.+|.  ++|++|++.||+++.+|++|||.|+++.+.+.++|++++++
T Consensus         2 ~~~~e~~-~l~~~~r~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~   78 (372)
T 2dvl_A            2 TLTQEQR-LVLDAVRRVAREVLYPLAPEYDRKAEYPW--PQLKALAELGLLGMTTPEEWGGVGLDSVTWALALEELAAAD   78 (372)
T ss_dssp             -CCHHHH-HHHHHHHHHHHHTHHHHHHHHHHTTCCCH--HHHHHHHHTTGGGTTSCGGGTSCCCCHHHHHHHHHHHHHHC
T ss_pred             CCCHHHH-HHHHHHHHHHHHhCchhHHHHHhhCCCCH--HHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHHhcC
Confidence            4789999 99999999999888888778888899999  99999999999999999999999999999999999999999


Q ss_pred             CchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeeeeeCC
Q 023057          110 GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNG  189 (288)
Q Consensus       110 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v~~~  189 (288)
                      +++++.+..|..++...|..+|+++|+++|||++.+|+.++|+++|||++|||...+.++|++++|||+|||+|.|+||+
T Consensus        79 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~  158 (372)
T 2dvl_A           79 PSVAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAFCLTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSA  158 (372)
T ss_dssp             HHHHHHHHHHTSHHHHHHHHHCCHHHHHHTHHHHHTTSSCEEEECCCSSCSSCGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred             cHHHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeEEEEECCEEEEEeEEEeecCC
Confidence            99988887774366778889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHHHHHhhh
Q 023057          190 PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLD  269 (288)
Q Consensus       190 ~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~~~~~~~  269 (288)
                      ..||+++|.+++++     ++++|+||++.||+++.+.|+++|++++++++|.|+||+||+++++|.++.++......++
T Consensus       159 ~~Ad~~~v~a~~~~-----g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l~  233 (372)
T 2dvl_A          159 GHAHLYVVMARTEK-----GISAFLVEKGTPGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEENLLGEEGRGLAYALAGLD  233 (372)
T ss_dssp             TTCSEEEEEEEETT-----EEEEEEEETTCTTEEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHH
T ss_pred             CcCCEEEEEEEeCC-----CcEEEEEeCCCCCeEecCcccccccCcCCeeEEEECcEEeCHHHcCCCCCchHHHHHHHHH
Confidence            99999999999863     6889999999999999999999999999999999999999999999999999988888999


Q ss_pred             HHHHHHHHHHHHHhhcccC
Q 023057          270 LERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       270 ~~r~~~aa~~~G~a~~al~  288 (288)
                      ..|+..++.++|+++++++
T Consensus       234 ~~r~~~aa~~~G~a~~al~  252 (372)
T 2dvl_A          234 SGRVGVAAQAVGIARGAFE  252 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999874

>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A*

Probab=100.00  E-value=2.8e-48  Score=355.05  Aligned_cols=257  Identities=38%  Similarity=0.651  Sum_probs=241.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCC-CcHHHHHHHHhCCCCCCCCCcCCCCCCC--CHHHHHHHHH
Q 023057           27 STSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFP-QDVNLWKLMGNFNLHGITAPQEYGGLGL--GYLYHCIAME  103 (288)
Q Consensus        27 ~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~l~~~Gl~~~~~pe~~GG~g~--~~~~~~~v~e  103 (288)
                      |++.++++|. ++++++++|+++.+.+.+.+.|+.+.+| .  ++|++|++.||+++.+|++|||.|+  ++.+.+.+.|
T Consensus         1 M~~~~~~~~~-~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~--~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~~~v~e   77 (397)
T 3mpi_A            1 MDFNLSKELQ-MLQKEVRNFVNKKIVPFADQWDNENHFPYE--EAVRPMGELGFFGTVIPEEYGGEGMDQGWLAAMIVTE   77 (397)
T ss_dssp             CBCCCCHHHH-HHHHHHHHHHHHHTTTTHHHHHHHTCCCTT--TTHHHHHHTTTTCTTSCGGGTSCCCTTHHHHHHHHHH
T ss_pred             CCCCCCHHHH-HHHHHHHHHHHHhCChhHHHHHhcCCCCHH--HHHHHHHHCCCCccCCChhhCCCCCCCCHHHHHHHHH
Confidence            5678999999 9999999999999999988899999999 9  9999999999999999999999999  9999999999


Q ss_pred             HHHhhCCchhhHHHhhhhHHHH-HHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeE
Q 023057          104 EISRASGSVGLSYGAHSNLCIN-QLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGN  182 (288)
Q Consensus       104 ~l~~~~~~~~~~~~~~~~~~~~-~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~  182 (288)
                      +++++++++++.+..|. .+.. .+..+|+++|+++|||++.+|+.++|+++|||..|||...+.++|++++|||+|||+
T Consensus        78 ela~~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~  156 (397)
T 3mpi_A           78 EIARGSSALRVQLNMEV-LGCAYTILTYGSEALKKKYVPKLSSAEFLGGFGITEPDAGSDVMAMSSTAEDKGDHWLLNGS  156 (397)
T ss_dssp             HHHHHCHHHHHHHHHHT-TTTHHHHHHHSCHHHHHHHHHHHHTTSSCCCEECCBTTBSSCGGGCCCEEEECSSEEEEEEE
T ss_pred             HHHhhCchHHHHHHHHH-HhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccCeEEEEEeCCEEEEEEE
Confidence            99999999998888775 5555 888999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeeCCCCCCEEEEEEEeCCCCCCCceEEEEE-eCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccH
Q 023057          183 KMWCTNGPVAQTLVVYAKTDIKAGSKGITAFII-EKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGV  261 (288)
Q Consensus       183 k~~v~~~~~ad~~lv~a~~~~~~~~~~~~~~lv-~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~  261 (288)
                      |.|+||+..||+++|.++++++++..++++|+| |++.|||++ +.|+++|++++++++|.|+||+||++++++.++.++
T Consensus       157 K~~~s~~~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~~~Gv~v-~~~~~~G~~~~~~~~v~fddv~Vp~~~~lg~~~~g~  235 (397)
T 3mpi_A          157 KTWISNAAQADVLIYYAYTDKAAGSRGLSAFVIEPRNFPGIKT-SNLEKLGSHASPTGELFLDNVKVPKENILGKPGDGA  235 (397)
T ss_dssp             EEEEETTTTCSSEEEEEESCGGGGGGSEEEEEECTTTSTTEEE-EECCCSSCTTSCEEEEEEEEEEEEGGGEESSTTCHH
T ss_pred             EEeeCCCcccCEEEEEEEcCCCCCCCceEEEEEEcCCCCCeEe-ccCccccCcCCceeEEEEeeEEECHHHcCCCCCchH
Confidence            999999999999999999875444557899999 999999999 999999999999999999999999999999999999


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057          262 YVMMSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       262 ~~~~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      ......++..|+..++.++|+++++++
T Consensus       236 ~~~~~~~~~~r~~~aa~~lG~a~~al~  262 (397)
T 3mpi_A          236 RIVFGSLNHTRLSAAAGGVGLAQACLD  262 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            988899999999999999999999874

>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus}

Probab=100.00  E-value=1.3e-47  Score=349.26  Aligned_cols=256  Identities=30%  Similarity=0.503  Sum_probs=234.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHH
Q 023057           25 FSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEE  104 (288)
Q Consensus        25 ~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~  104 (288)
                      ..|++.+++++. ++++++++|+++++.+...+.|+.+.+|.  ++|++|++.||+++.+|++|||.|+++.+.+.++|+
T Consensus         5 ~~~~~~~~~~~~-~l~~~~r~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~ee   81 (385)
T 2eba_A            5 YALEDLLTPEEK-EVQKAARRFLEKEALPHIRDWWEEGVFPT--HLIPRFAELGFLGPTLPPEYGGAGVSSAAYGLICYE   81 (385)
T ss_dssp             TCGGGGSCHHHH-HHHHHHHHHHHHHTHHHHHHHHHTTCCCG--GGHHHHHHHTCSSTTSCGGGTCCCCCHHHHHHHHHH
T ss_pred             cccCCCCCHHHH-HHHHHHHHHHHHhCCccHHHHHHhCCCCH--HHHHHHHHCCCcCCCCchhhCCCCCCHHHHHHHHHH
Confidence            446678999999 99999999999999888888888899999  999999999999999999999999999999999999


Q ss_pred             HHhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCC-CCCeEEEEEeCCeEEEeeEe
Q 023057          105 ISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDV-VGMKCKADRVDGGYIINGNK  183 (288)
Q Consensus       105 l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~-~~~~~~a~~~~~g~~l~G~k  183 (288)
                      ++++++++++.+..|..++...|..+|+++|+++|||++++|+.++|+++|||++|||. ..+.|+|++++|||+|||+|
T Consensus        82 la~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~~t~A~~~~~g~~lnG~K  161 (385)
T 2eba_A           82 LERVDSGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLARGEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTK  161 (385)
T ss_dssp             HHHHCHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCCTTCTTSTTTTCCCEEEC--CEEEEEEEE
T ss_pred             HHHhCchHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCcCCCccccCeeEEEEeCCEEEEEeee
Confidence            99999999988887765566778899999999999999999999999999999999999 88999999999999999999


Q ss_pred             eeeeCCCCCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHH
Q 023057          184 MWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYV  263 (288)
Q Consensus       184 ~~v~~~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~  263 (288)
                      .|+||+..||+++|.+++++  +  .+++|+||++.||+++.+.|+++|++++++++|+|+||+||+++++ ..+.++..
T Consensus       162 ~~~s~~~~Ad~~~v~a~~~~--g--~~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~l-~~~~g~~~  236 (385)
T 2eba_A          162 MWITNGNLAHLAVIWAKDEG--G--EVLGFLVPTDTPGFQAREVKRKMSLRASVTSELVLEEVRVPESLRL-PKALGLKA  236 (385)
T ss_dssp             EEEETTTTCSEEEEEEECC-------EEEEEEETTSTTEEEEECCSBSSSCSSCEEEEEEEEEEEEGGGBC-TTCCSTHH
T ss_pred             eccCCCcccCEEEEEEEeCC--C--cEEEEEEeCCCCCeEecccccccccccCceeEEEEccEEEcHHHcc-CCCchHHH
Confidence            99999999999999999752  2  3889999999999999999999999999999999999999999999 67788888


Q ss_pred             HHHhhhHHHHHHHHHHHHHhhcccC
Q 023057          264 MMSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       264 ~~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      ....++..|+.+++.++|+++++++
T Consensus       237 ~~~~l~~~r~~~aa~~~G~a~~al~  261 (385)
T 2eba_A          237 PLSCLTQARFGIAWGAMGALEAVYE  261 (385)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888899999999999999999874

>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis}

Probab=100.00  E-value=1.7e-47  Score=350.04  Aligned_cols=256  Identities=30%  Similarity=0.526  Sum_probs=239.8

Q ss_pred             ccCCCCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHH
Q 023057           23 AAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAM  102 (288)
Q Consensus        23 ~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~  102 (288)
                      ....|++.+++++. ++++++++|+++++.+...+.|+.+.+|.  ++|++|++.||+++.+ ++|||.|+++.+.+.++
T Consensus        18 ~~~~m~~~l~~e~~-~l~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~Gl~~l~~-~e~GG~g~~~~~~~~v~   93 (399)
T 3swo_A           18 ELFDTDRLLDQDER-DIAATVRQFVDTRLKPNVEGWFESATLPS--ELAKEFGNLGVLGMHL-QGYGCAGTNAVSYGLAC   93 (399)
T ss_dssp             HHHTGGGGSCHHHH-HHHHHHHHHHHHHTHHHHHHHHHHTCCCT--THHHHHHHHTCTTTTS-CSTTCCCCCHHHHHHHH
T ss_pred             ccccCCCCCCHHHH-HHHHHHHHHHHHhCChhHHHHHhhCCCCH--HHHHHHHHCCCCcCCh-hhhCCCCCCHHHHHHHH
Confidence            33456778999999 99999999999999888888888999999  9999999999999999 99999999999999999


Q ss_pred             HHHHhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeE
Q 023057          103 EEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGN  182 (288)
Q Consensus       103 e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~  182 (288)
                      |+++++++++++.+..|..++...+..+|+++|+++|||++.+|+.++|+++|||++|||...+.|+|++++|||+|||+
T Consensus        94 eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~  173 (399)
T 3swo_A           94 MELEAGDSGFRSFVSVQGSLSMFSIYRYGSEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRARRDGSDWILNGT  173 (399)
T ss_dssp             HHHHHHCHHHHHHHHHHTTTHHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEE
T ss_pred             HHHHHhCccHHHHHHHHhhhhhhHHHhcCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCCCccceEEEEEeCCEEEEEEE
Confidence            99999999988877777556778899999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeeCCCCCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHH
Q 023057          183 KMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVY  262 (288)
Q Consensus       183 k~~v~~~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~  262 (288)
                      |.|+||+..||+++|.+++++     ++++|+||++.|||++.+.|+++|++++++++|.|+||+||+++++|. +.++.
T Consensus       174 K~~vs~a~~Ad~~~v~a~~~~-----g~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~fd~v~Vp~~~~lg~-~~g~~  247 (399)
T 3swo_A          174 KMWITNGNLADVATVWAQTDD-----GIRGFLVPTDTPGFTANEIHRKLSLRASVTSELVLDNVRLPASAQLPL-AEGLS  247 (399)
T ss_dssp             EEEEETTTTCSEEEEEEBCTT-----SCEEEEEETTSTTEEEEECCCBSSCCSSCEEEEEEEEEEECGGGBCTT-CCSTH
T ss_pred             EEeECCCCccCEEEEEEEeCC-----ceEEEEEeCCCCCeEeecCcCcccCCCCceeEEEEccEEEcHHHcCCC-ChhHH
Confidence            999999999999999999762     588999999999999999999999999999999999999999999998 78898


Q ss_pred             HHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057          263 VMMSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       263 ~~~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      .....++.+|+.+++.++|+++++++
T Consensus       248 ~~~~~l~~~r~~~aa~~~G~a~~al~  273 (399)
T 3swo_A          248 APLSCLNEARFGIVFGALGAARDSLE  273 (399)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88899999999999999999999874

>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A*

Probab=100.00  E-value=9.7e-47  Score=348.35  Aligned_cols=254  Identities=30%  Similarity=0.489  Sum_probs=233.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHH
Q 023057           27 STSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEIS  106 (288)
Q Consensus        27 ~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~  106 (288)
                      |++.+++++. ++++++++|+++++.|...++++.+.+|.  ++|++|++.||+++.+| +|||.|+++.+.+.++|+++
T Consensus        51 ~~~~l~~e~~-~l~~~~r~f~~~~~~p~~~~~~~~~~~p~--~~~~~l~e~Gl~~l~~p-e~GG~G~~~~~~~~v~eela  126 (436)
T 2ix5_A           51 FNDLLTPEEQ-AIRKKVRECMEKEVAPIMTEYWEKAEFPF--HITPKLGAMGVAGGSIK-GYGCPGLSITANAIATAEIA  126 (436)
T ss_dssp             GGGGSCHHHH-HHHHHHHHHHHHHTHHHHHHHHHHTCCCG--GGHHHHHTTTCTTTTCC-STTCCCCCHHHHHHHHHHHH
T ss_pred             cCCCCCHHHH-HHHHHHHHHHHhhCChhhHHHHhcCCCCH--HHHHHHHHcCCCcCcCC-CCCCCCCCHHHHHHHHHHHH
Confidence            4457899999 99999999999999888777777788999  99999999999999999 99999999999999999999


Q ss_pred             hhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeeee
Q 023057          107 RASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWC  186 (288)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v  186 (288)
                      ++++++++.+..|..++...|..+|+++|+++|||++++|+.++|+++|||++|||...+.|+|++++|||+|||+|.|+
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~~gt~~qk~~~l~~l~~G~~~~a~a~tEp~~GSd~~~~~t~A~~~gdg~vLnG~K~~i  206 (436)
T 2ix5_A          127 RVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKVEGGWKINGQKRWI  206 (436)
T ss_dssp             HHCHHHHHHHHHHHTTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEE
T ss_pred             hhCccHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCCcccceEEEEEeCCEEEEeeeccCC
Confidence            99999887777775466778889999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHHHHH
Q 023057          187 TNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMS  266 (288)
Q Consensus       187 ~~~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~~~~  266 (288)
                      ||+..||+++|.++++++   +++++|+||.+.|||++.+.|+++|++++++++|.|+||+||++++++.. .++.....
T Consensus       207 s~a~~Ad~~lv~Ar~~~~---~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~fddv~VP~~~~lg~~-~g~~~~~~  282 (436)
T 2ix5_A          207 GNSTFADLLIIFARNTTT---NQINGFIVKKDAPGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGV-NSFQDTSK  282 (436)
T ss_dssp             ETTTTCSEEEEEEEETTT---SSEEEEEEETTCTTEEEEECCCBSSSTTSCEEEEEEEEEEEEGGGBCTTC-SSHHHHHH
T ss_pred             CCCcccCEEEEEEEECCC---CcEEEEEEECCCCCeEeeccccccCCCcCCceeEEeccEEECHHHcCCcc-ccHHHHHH
Confidence            999999999999998632   36889999999999999999999999999999999999999999999865 47888888


Q ss_pred             hhhHHHHHHHHHHHHHhhcccC
Q 023057          267 GLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       267 ~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      .++..|+.+++.++|+++++++
T Consensus       283 ~l~~~r~~~aa~~~G~a~~al~  304 (436)
T 2ix5_A          283 VLAVSRVMVAWQPIGISMGIYD  304 (436)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999874

>4hr3_A Putative acyl-COA dehydrogenase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: FAD; 1.80A {Mycobacterium abscessus}

Probab=100.00  E-value=4.1e-47  Score=349.24  Aligned_cols=262  Identities=21%  Similarity=0.255  Sum_probs=227.5

Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccC------------------CCCCcHHHHHHHHhCCCCCCCCC
Q 023057           24 AFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSN------------------SFPQDVNLWKLMGNFNLHGITAP   85 (288)
Q Consensus        24 ~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~------------------~~~~~~~~~~~l~~~Gl~~~~~p   85 (288)
                      +.+|++.+++++. ++++++++|+++++.|...+.++..                  .+|+  ++|++|++.||+++.+|
T Consensus         2 ~~~M~~~~~~~~~-~l~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~e~G~~~~~~P   78 (415)
T 4hr3_A            2 PGSMDFAPSARAA-ELIAAVREFIDAEVMPVERAVLAHHDELLGARAGTTAELWHVPPELD--SLKAKARAAGLWNLFLP   78 (415)
T ss_dssp             -----CCCCHHHH-HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCSCSGGGGSCCTHHH--HHHHHHHHTTCSSTTCC
T ss_pred             CCCCCCCCCHHHH-HHHHHHHHHHHHhCCccHHHHhhhccccccccccccccccCcchhHH--HHHHHHHhCCCcCcCCC
Confidence            3457889999999 9999999999998877765554332                  2456  89999999999999999


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHhhCCchhhHH-HhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCC-CCCCC
Q 023057           86 QEYGGLGLGYLYHCIAMEEISRASGSVGLSY-GAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPN-AGSDV  163 (288)
Q Consensus        86 e~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~-~g~d~  163 (288)
                      ++|||.|+++.+.+.++|++++++.+..+.. ..+...+...|..+|+++|+++|||++++|+.++|+++|||+ .|||.
T Consensus        79 ~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~~gsd~  158 (415)
T 4hr3_A           79 DPELGGGLSNSEYAPLAEQMGRSLFAPTVFNCNAPDSGNMEVLHRYGSQEQKEVWLEPLLEGDIRSAFCMTEPDVASSDA  158 (415)
T ss_dssp             CTTTSCCCCHHHHHHHHHHHTTCSSHHHHTTCCTTHHHHHHHHHHHCCHHHHHHTHHHHHTTSCEEEEECCCTTSCTTSG
T ss_pred             HHHCCCCCCHHHHHHHHHHHhcccchHHHHHHhccccchHHHHHHhCCHHHHHHHHHHHhCCCceeEEEEcCCCCCCCch
Confidence            9999999999999999999999875433211 122223346788999999999999999999999999999999 99999


Q ss_pred             CCCeEEEEEeCCeEEEeeEeeeeeCCCC--CCEEEEEEEeCCCC-CCCceEEEEEeCCCCCeEecccccccCCCCCc--e
Q 023057          164 VGMKCKADRVDGGYIINGNKMWCTNGPV--AQTLVVYAKTDIKA-GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSD--T  238 (288)
Q Consensus       164 ~~~~~~a~~~~~g~~l~G~k~~v~~~~~--ad~~lv~a~~~~~~-~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~--~  238 (288)
                      ..+.|+|++++|||+|||+|.|+||+..  ||+++|.++++++. +.+++++|+||++.|||++.++|+++|+++++  +
T Consensus       159 ~~~~t~A~~~g~g~~lnG~K~~is~a~~~~Ad~~~v~a~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~r~~~~~~  238 (415)
T 4hr3_A          159 TNMAATAVVEGDEVVINGRKWWSTGVGHPDCKVIIFMGLTDPNAHRYARHSMVLVPMDTPGITVERMLPTMGFYDEPGGH  238 (415)
T ss_dssp             GGCCCEEEEETTEEEEEEEEEEEETTTSTTEEEEEEEEECCTTSCTTSSEEEEEEETTSTTEEEEEECCBTTBCCTTTCE
T ss_pred             hhCeeEEEEECCEEEEeeEEeeECCCCCCCCCEEEEEEEeCCCCCCCCceEEEEEEcCCCceEecCCCCccccCCCCCCe
Confidence            9999999999999999999999999966  99999999986532 34579999999999999998899999999987  9


Q ss_pred             eeEEeceeeeCCCCcccCCCccHHHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057          239 CELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       239 ~~v~~~~v~vp~~~~l~~~~~~~~~~~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      ++|.|+||+||++++||..+.++......++.+|+.+++.++|+++++++
T Consensus       239 ~~v~fddv~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~  288 (415)
T 4hr3_A          239 GVVSFDNVRLPADAFIAGPGKGFEIAQGRLGPGRVHHAMRLIGLAEVALE  288 (415)
T ss_dssp             EEEEEEEEEEEGGGBSSCTTCHHHHHHHHCSHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEccEEECHHHcCCCCCchHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999874

>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A*

Probab=100.00  E-value=4.9e-46  Score=339.68  Aligned_cols=259  Identities=28%  Similarity=0.466  Sum_probs=235.7

Q ss_pred             ccccCCCCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHH
Q 023057           21 HSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCI  100 (288)
Q Consensus        21 ~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~  100 (288)
                      .+.+.+|++.+++++. ++++++++|+++.+.+...+.++.+.+|.  ++|++|++.||+++.+ ++|||.|+++.+.+.
T Consensus         4 ~~~~~~m~~~~~~e~~-~l~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~Gl~~l~~-~~~GG~g~~~~~~~~   79 (392)
T 1siq_A            4 WQDPLVLEEQLTTDEI-LIRDTFRTYCQERLMPRILLANRNEVFHR--EIISEMGELGVLGPTI-KGYGCAGVSSVAYGL   79 (392)
T ss_dssp             TTSTTCGGGGSCHHHH-HHHHHHHHHHHHHTHHHHHHHHHHTCCCT--HHHHHHHHTTCSSTTC-EETTEECCCHHHHHH
T ss_pred             cccccccCCCCCHHHH-HHHHHHHHHHHHhcCcchHHHHhhCCCCH--HHHHHHHhCCCCcccH-HhhCCCCCCHHHHHH
Confidence            3455667788999999 99999999999988888777788889999  9999999999999999 999999999999999


Q ss_pred             HHHHHHhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEe--CCeEE
Q 023057          101 AMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYI  178 (288)
Q Consensus       101 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~--~~g~~  178 (288)
                      +.|+++++++++++.+..|..++...+..+|+++|+++|||++++|+.++|+++|||++|||+..+.|+|+++  +|||+
T Consensus        80 ~~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~~~g~~  159 (392)
T 1siq_A           80 LARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYT  159 (392)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEE
T ss_pred             HHHHHHHhCcHHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEECCCCCCcCccccEEEEEEeCCCCEEE
Confidence            9999999999988766666545566788899999999999999999999999999999999999999999999  99999


Q ss_pred             EeeEeeeeeCCCCCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCC
Q 023057          179 INGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEG  258 (288)
Q Consensus       179 l~G~k~~v~~~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~  258 (288)
                      |||+|.|+||+..||+++|.+++++    +++++|+||++.|||++.+.|+++|++++++++|+|+||+||++++++.. 
T Consensus       160 lnG~K~~vs~~~~Ad~~~v~a~~~~----g~~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~-  234 (392)
T 1siq_A          160 LNGTKTWITNSPMADLFVVWARCED----GCIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGA-  234 (392)
T ss_dssp             EEEEEEEEETGGGCSEEEEEEEETT----SCEEEEEEETTCTTEECCBCCCCSSSTTSCEEEEEEEEEEEEGGGBCTTC-
T ss_pred             EEEEEEeecCCcccCEEEEEEEECC----CCEEEEEEeCCCCCeEeccccccccccCCceEEEEEccEEECHHHcCCcc-
Confidence            9999999999999999999999863    24789999999999999999999999999999999999999999999865 


Q ss_pred             ccHHHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057          259 KGVYVMMSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       259 ~~~~~~~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      .++......++..|+.+++.++|+++++++
T Consensus       235 ~g~~~~~~~l~~~r~~~aa~~~G~a~~al~  264 (392)
T 1siq_A          235 SSLGGPFGCLNNARYGIAWGVLGASEFCLH  264 (392)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            477777778888999999999999999874

>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis}

Probab=100.00  E-value=4.5e-46  Score=354.98  Aligned_cols=254  Identities=34%  Similarity=0.585  Sum_probs=230.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccC-CCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHH
Q 023057           27 STSLLFDDTQLQFKESVGQFARENIAPRAANIDQSN-SFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEI  105 (288)
Q Consensus        27 ~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l  105 (288)
                      ++..++++|. ++++++++|+++.+.|...++++.+ .+|.  ++|++|++.||+++.+|++|||.|+++.+.+.+.|++
T Consensus        29 ~p~~lt~eq~-~l~~~vr~f~~~~~~p~~~~~d~~~~~~~~--~~~~~l~e~Gl~gl~vPee~GG~G~~~~~~~~v~Eel  105 (597)
T 3owa_A           29 TPEDFSSEHK-MIAKTTEDFIVNEVLPELEYLEQHEFDRSV--RLLKEAGELGLLGADVPEEYGGIGLDKVSSALIAEKF  105 (597)
T ss_dssp             CGGGCCHHHH-HHHHHHHHHHHHHTGGGHHHHTTTCHHHHH--HHHHHHHHTTTTCTTSCGGGTCCCCCHHHHHHHHHHH
T ss_pred             CccCCCHHHH-HHHHHHHHHHHHhCchhHHHHHhcCCcCCH--HHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHH
Confidence            4667999999 9999999999999988877777665 5777  9999999999999999999999999999999999999


Q ss_pred             HhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeC--CeEEEeeEe
Q 023057          106 SRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVD--GGYIINGNK  183 (288)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~--~g~~l~G~k  183 (288)
                      +++++ .+..+..|...+...+..+|+++|+++|||++++|++++|+++|||++|||...++|+|++++  |+|+|||+|
T Consensus       106 ~~~~~-~~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~la~Ge~~~a~alTEp~aGSD~~~~~T~A~~~~dG~~yvLnG~K  184 (597)
T 3owa_A          106 SRAGG-FAITHGAHVGIGSLPIVLFGNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKTTARLNAEGTHYVLNGEK  184 (597)
T ss_dssp             GGGTH-HHHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECTTSSEEEEEEEE
T ss_pred             Hccch-HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCcceeeEecCCCCCCCcccceeEEEEeCCCCEEEEeeEE
Confidence            99864 444455555455566788999999999999999999999999999999999999999999864  459999999


Q ss_pred             eeeeCCCCCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHH
Q 023057          184 MWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYV  263 (288)
Q Consensus       184 ~~v~~~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~  263 (288)
                      .|+||+..||+++|++++++    .++++|+||++.|||++.+.|+++|++++++++|.|+||+||.+++||..+.|+..
T Consensus       185 ~~is~a~~Ad~~lV~Art~~----~g~s~flV~~~~pGv~v~~~~~~~Glrgs~t~~v~fddV~VP~~~lLG~~g~G~~~  260 (597)
T 3owa_A          185 QWITNSAFADVFIVYAKIDG----EHFSAFIVEKDYAGVSTSPEEKKMGIKCSSTRTLILEDALVPKENLLGEIGKGHII  260 (597)
T ss_dssp             EEEETTTTCSEEEEEEEETT----TEEEEEEEETTSTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHH
T ss_pred             EEeCCCccCCEEEEEEEeCC----CceEEEEEeCCCCCeEEecccccccCCCCCceEEEEeceeecHHHhcCcccchHHH
Confidence            99999999999999999864    37899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHHHHhhcccC
Q 023057          264 MMSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       264 ~~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      ....++.+|+.+++.++|+++++++
T Consensus       261 ~~~~l~~~R~~~aa~~lG~a~~al~  285 (597)
T 3owa_A          261 AFNILNIGRYKLGVGTVGSAKRAVE  285 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhHhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999874

>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1

Probab=100.00  E-value=3.2e-46  Score=337.94  Aligned_cols=240  Identities=24%  Similarity=0.359  Sum_probs=221.7

Q ss_pred             HHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhCCchhhHHHhhh
Q 023057           41 ESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHS  120 (288)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~  120 (288)
                      +++++|+++++.+...+.|+.+.+|.  ++|++|++.||+++.+|++|||.|+++.+.+.++|+++++++++++.+..|.
T Consensus         2 ~~~r~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~   79 (366)
T 1r2j_A            2 PERDALLTDLVGDRAAEWDTSGELPR--DLLVRLGADGLLCAEVAAEHGGLGLGSRENGEFTAHVGSLCSSLRSVMTSQG   79 (366)
T ss_dssp             -CCHHHHHHHHSSCHHHHHHHTCCCH--HHHHHHHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             hHHHHHHHHhccccHHHHhhcCCCCH--HHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence            56789999999988888888899999  9999999999999999999999999999999999999999999998877775


Q ss_pred             hHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeeeeeCCCCCCEEEEEEE
Q 023057          121 NLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAK  200 (288)
Q Consensus       121 ~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v~~~~~ad~~lv~a~  200 (288)
                      .++...|. +|+++|+++|||++++|+ ++|+++|||++|||...+.|+|++++|||+|||+|.|+||+..||+++|.++
T Consensus        80 ~~~~~~l~-~g~~~q~~~~l~~~~~G~-~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v~a~  157 (366)
T 1r2j_A           80 MAAWTVQR-LGDAGQRATFLKELTSGK-LAAVGFSERQAGSDLSAMRTRVRLDGDTAVVDGHKVWTTAAAYADHLVVFGL  157 (366)
T ss_dssp             HHHHHHHH-HSCHHHHHHHHHHTTCC--CEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEETTTTTCSEEEEEEB
T ss_pred             HHHHHHHH-hCCHHHHHHHHHHHhCCC-eeEEEeCCCCCCCchhhCEeEEEEeCCEEEEEEEEecccCCcccCEEEEEEE
Confidence            45667777 999999999999999999 9999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHHH-HHhhhHHHHHHHHHH
Q 023057          201 TDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVM-MSGLDLERLVLAAGP  279 (288)
Q Consensus       201 ~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~~-~~~~~~~r~~~aa~~  279 (288)
                      +++  +  ++++|+||++.|||++.+.|+++|++++++++|+|+||+||+++++|.++.++... ...++.+|+..++.+
T Consensus       158 ~~~--~--g~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~~l~~~r~~~aa~~  233 (366)
T 1r2j_A          158 QED--G--SGAVVVVPADTPGVRVERVPKPSGCRAAGHADLHLDQVRVPAGAVLAGSGASLPMLVAASLAYGRKSVAWGC  233 (366)
T ss_dssp             CSS--S--CCEEEEEETTSTTEEEEECSSCSSSTTSCCEEEEEEEEEEEGGGBCTTTTSCTTTTTHHHHHHHHHHHHHHH
T ss_pred             eCC--C--ceEEEEEECCCCCeEecCCcCCccCCCCCeeEEEEeeEEEcHHHcCCCCCccHHHHHHHHhhHHHHHHHHHH
Confidence            753  2  67899999999999999999999999999999999999999999999888888777 778899999999999


Q ss_pred             HHHhhcccC
Q 023057          280 LGIMQAPVR  288 (288)
Q Consensus       280 ~G~a~~al~  288 (288)
                      +|+++++++
T Consensus       234 ~G~a~~al~  242 (366)
T 1r2j_A          234 VGILRACRT  242 (366)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999874

>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A*

Probab=100.00  E-value=1.7e-45  Score=351.85  Aligned_cols=279  Identities=32%  Similarity=0.550  Sum_probs=249.8

Q ss_pred             cccccccccccccccccccCCCCCCCCHHHHH---HHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCC
Q 023057            6 GARSLCASFFTKKQKHSAAFSSTSLLFDDTQL---QFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGI   82 (288)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~---~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~   82 (288)
                      ++.|+..++|.++.+.++.+.+|..+++++.+   ++++.+++|+++.+.+.  +.|+...+|+  +.|+.|++.||+++
T Consensus        21 ~~~~~~~~lf~g~~~~~~~~~~p~~l~~~~~~~~~~l~~~~~~~~~~~~~~~--~~d~~~~~p~--~~~~~l~e~Gl~~l   96 (607)
T 2uxw_A           21 QSMSFAVGMFKGQLTTDQVFPYPSVLNEEQTQFLKELVEPVSRFFEEVNDPA--KNDALEMVEE--TTWQGLKELGAFGL   96 (607)
T ss_dssp             CCCCHHHHHTTTCCCCTTTSSCCCCCCHHHHHHHHHHHHHHHHHHHHTCCHH--HHHHHTSCCH--HHHHHHHHTTTTCT
T ss_pred             CCccHHHHhcCCCCCHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCHH--HhccccCCCH--HHHHHHHHcCCcCC
Confidence            56788888999998999888877778988861   38899999998887543  3566788998  99999999999999


Q ss_pred             CCCcCCCCCCCCHHHHHHHHHHHHhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCC
Q 023057           83 TAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSD  162 (288)
Q Consensus        83 ~~pe~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d  162 (288)
                      .+|++|||.|++..+...+.|+++++++++++.+..|..++...|..+|+++|+++|||++++|++++|+++|||++|||
T Consensus        97 ~~P~e~GG~gl~~~~~~~v~e~l~~~~~s~a~~~~~~~~~g~~~l~~~Gt~eqk~~~Lp~l~~G~~~~~~alTEp~aGSD  176 (607)
T 2uxw_A           97 QVPSELGGVGLCNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSD  176 (607)
T ss_dssp             TSCGGGTSCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSC
T ss_pred             CCChhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCC
Confidence            99999999999999999999999999999988777775344678889999999999999999999999999999999999


Q ss_pred             CCCCeEEEEEeC--CeEEEeeEeeeeeCCCCCCEEEEEEEeCCCC---C--CCceEEEEEeCCCCCeEecccccccCCCC
Q 023057          163 VVGMKCKADRVD--GGYIINGNKMWCTNGPVAQTLVVYAKTDIKA---G--SKGITAFIIEKGMPGFSTAQKLDKLGMRG  235 (288)
Q Consensus       163 ~~~~~~~a~~~~--~g~~l~G~k~~v~~~~~ad~~lv~a~~~~~~---~--~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~  235 (288)
                      ...+.|+|++++  ++|+|||+|.|+|++..||+++|+|+++..+   +  .+++++|+||++.|||++.+.|+++|+++
T Consensus       177 ~~~~~t~A~~~~dG~~y~LnG~K~~is~~~~Ad~~lV~Ar~~~~~~~~g~~~~gis~flVp~~~~Gv~v~~~~~~~G~rg  256 (607)
T 2uxw_A          177 AASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKMGIKA  256 (607)
T ss_dssp             GGGCCCEEEECTTSSEEEEEEEEEEEETTTTCSEEEEEEEEEEECTTTCCEEEEEEEEEEEGGGSSEEECCCCCCSSCTT
T ss_pred             cccceeEEEEeCCCCEEEEEeEEEeecCCcccCEEEEEEEecCCCcccCCCCCceEEEEEeCCCCCeEEecCccccCCCC
Confidence            999999999974  4799999999999999999999999985321   1  34689999999999999999999999999


Q ss_pred             CceeeEEeceeeeCCCCcccCCCccHHHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057          236 SDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       236 ~~~~~v~~~~v~vp~~~~l~~~~~~~~~~~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      ++++.|.|+||+||.+++||.++.|+..+...++.+|+.+++.++|+++++++
T Consensus       257 ~~t~~v~fddv~VP~~~llG~~g~G~~~~~~~l~~~Rl~~aa~~~G~a~~al~  309 (607)
T 2uxw_A          257 SNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTMRGIIA  309 (607)
T ss_dssp             SCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeeEEEeccEEecHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999874

>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A*

Probab=100.00  E-value=1.8e-45  Score=340.69  Aligned_cols=259  Identities=19%  Similarity=0.304  Sum_probs=231.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhhcCccccccccc----CCCC--CcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHH
Q 023057           26 SSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQS----NSFP--QDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHC   99 (288)
Q Consensus        26 ~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~----~~~~--~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~   99 (288)
                      ||++.+++++. ++++.+++|+++++.|...+.++.    +.+|  .  ++|++|++.||+++.+|++|||.|+++.+.+
T Consensus         1 ~M~~~~~~e~~-~l~~~~r~f~~~~~~p~~~~~d~~~~~~~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~   77 (439)
T 2c12_A            1 MVDFKLSPSQL-EARRHAQAFANTVLTKASAEYSTQKDQLSRFQATR--PFYREAVRHGLIKAQVPIPLGGTMESLVHES   77 (439)
T ss_dssp             -CBCCCCHHHH-HHHHHHHHHHHHTGGGHHHHHTTCSSHHHHHHTTH--HHHHHHHHTTTTGGGSBGGGTCCBCCHHHHH
T ss_pred             CCCCCCCHHHH-HHHHHHHHHHHHhCChhHHHHhhcccccCCCCChH--HHHHHHHHCCCCCCCCChhhCCCCCCHHHHH
Confidence            47788999999 999999999999998876555543    3455  5  8999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHh--cCCeeEEEEecCCCCCC-----CCCCCeEEEEE
Q 023057          100 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLI--SGEHVGALAMSEPNAGS-----DVVGMKCKADR  172 (288)
Q Consensus       100 ~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~--~g~~~~~~a~te~~~g~-----d~~~~~~~a~~  172 (288)
                      .++|+++++++++++.+..|. ++...+..+|+++|+++|||+++  +|+.++|+++|||++||     |...+.|+|++
T Consensus        78 ~v~eela~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~~~G~~~~~~a~tEp~~Gs~~~~sd~~~~~t~A~~  156 (439)
T 2c12_A           78 IILEELFAVEPATSITIVATA-LGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARK  156 (439)
T ss_dssp             HHHHHHHTTCCTTHHHHHHHH-HHHHHHHHSSCHHHHHHHTGGGGSSCSCCCEEEECCCTTCSTTTTCTTSCCCSCEEEE
T ss_pred             HHHHHHHhhChHHHHHHHHhH-HHHHHHHHhCCHHHHHHHHHHHhhcCCCEEEEEEecCCCCCCCccccccccceeEEEE
Confidence            999999999999998877775 55667889999999999999999  69999999999999887     57778999999


Q ss_pred             eCCeEEEeeEeeeeeCCC-----CCCEEEEEEEe-C----CC----CCCCceEEEEEeCCCC------CeEecccccccC
Q 023057          173 VDGGYIINGNKMWCTNGP-----VAQTLVVYAKT-D----IK----AGSKGITAFIIEKGMP------GFSTAQKLDKLG  232 (288)
Q Consensus       173 ~~~g~~l~G~k~~v~~~~-----~ad~~lv~a~~-~----~~----~~~~~~~~~lv~~~~~------gv~~~~~~~~~G  232 (288)
                      ++|||+|||+|.|+||+.     .||+++|++++ +    ++    ++.+++++|+||.+.|      |+++.+.|+++|
T Consensus       157 ~~~g~~lnG~K~~is~~~~~~~~~Ad~~~v~ar~~~~~~~~~~~~~~~~~g~~~flV~~~~pGv~~~~Gv~v~~~~~~~G  236 (439)
T 2c12_A          157 VGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAG  236 (439)
T ss_dssp             ETTEEEEEEEEECCTTTTTTTSSCCSEEEEEEEECSCTTSCCCTTSCGGGGEEEEEECHHHHHTSCGGGEEEEECCCBSS
T ss_pred             cCCEEEEEeEEEeecCCCccccccCcEEEEEEEcCCcccCccccccCCCCceEEEEEECCCCcccCCCceEeCCcccccc
Confidence            999999999999999997     99999999998 5    22    2334789999999998      888989999999


Q ss_pred             CCCCceeeEEeceeeeCCCCcccCCCccHH-HHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057          233 MRGSDTCELVFENCFVPNENVLGQEGKGVY-VMMSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       233 l~~~~~~~v~~~~v~vp~~~~l~~~~~~~~-~~~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      ++++++++|.|+||+||++++|+..+.++. +....++..|+.+++.++|+++++++
T Consensus       237 ~r~~~~~~v~fddv~VP~~~~lg~~~~g~~~~~~~~l~~~r~~~aa~~~G~a~~al~  293 (439)
T 2c12_A          237 HITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFE  293 (439)
T ss_dssp             CTTCCCCEEEEEEEEEEGGGBCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCceEEEEccEEecHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998888888 88889999999999999999999874

>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=4.8e-45  Score=347.61  Aligned_cols=266  Identities=31%  Similarity=0.543  Sum_probs=235.9

Q ss_pred             ccccccccccccCCCCCCCCHHHHHHHHHHHHHHHHhhcCccccccccc-CCCCCcHHHHHHHHhCCCCCCCCCcCCCCC
Q 023057           13 SFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQS-NSFPQDVNLWKLMGNFNLHGITAPQEYGGL   91 (288)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~   91 (288)
                      .+|... +.++.+. .+.+++|+. ++++.+++|+++.+.|..++.+.. ..+|+  ++|+.|++.||+++.+|++|||.
T Consensus        12 ~~f~~~-~~~~~~~-~~~~~~e~~-~l~~~~~~~~~~~~~p~~~~~~~~~~~~p~--~~~~~l~e~Gl~~l~vPee~GG~   86 (577)
T 2z1q_A           12 GGWLLE-VPERVYT-PEDFDESVK-EIARTTRTFVEREVLPLLERMEHGELELNV--PLMRKAGELGLLAIDVPEEYGGL   86 (577)
T ss_dssp             TGGGTS-CCSCCCC-GGGCCHHHH-HHHHHHHHHHHTTTHHHHHHHHTTCGGGHH--HHHHHHHHTTTTSTTSCGGGTCC
T ss_pred             CccccC-CHHHcCC-CCCCCHHHH-HHHHHHHHHHhccCchhHHhhhcccCCCCH--HHHHHHHHCCCCCcCCChhhCCC
Confidence            344444 4444443 567899999 999999999999887775444322 36788  99999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEE
Q 023057           92 GLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKAD  171 (288)
Q Consensus        92 g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~  171 (288)
                      |+++.+.+.++|++ +.++++++.+..|..++...|..+|+++||++|||++++|+.++|+++|||++|||...+.|+|+
T Consensus        87 g~~~~~~~~v~eel-~~~~s~~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~l~~G~~~~a~alTEp~aGSD~~~~~t~A~  165 (577)
T 2z1q_A           87 DLPKVISTVVAEEL-SGSGGFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASGEWIAAYCLTEPGSGSDALAAKTRAT  165 (577)
T ss_dssp             CCCHHHHHHHHHHH-TTSCTHHHHHHHHHTTTTHHHHHHCCHHHHHTTHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEE
T ss_pred             CCCHHHHHHHHHHH-hhcccHHHHHhhhHHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccCeeEEE
Confidence            99999999999999 78888888777775455667889999999999999999999999999999999999999999999


Q ss_pred             Ee--CCeEEEeeEeeeeeCCCCCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeC
Q 023057          172 RV--DGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVP  249 (288)
Q Consensus       172 ~~--~~g~~l~G~k~~v~~~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp  249 (288)
                      ++  +++|+|||+|.|+||+..||+++|++++++    +++++|+||++.|||++.+.|+++|+++++++.|.|+||+||
T Consensus       166 ~~~dG~~~vLnG~K~~it~a~~Ad~~~V~Ar~~g----~gis~flVp~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~VP  241 (577)
T 2z1q_A          166 LSEDGKHYILNGVKQWISNAGFAHLFTVFAKVDG----EHFTAFLVERDTPGLSFGPEEKKMGIKASSTRQVILEDVKVP  241 (577)
T ss_dssp             ECTTSSEEEEEEEEEEEETTTTCSEEEEEEEETT----TEEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEE
T ss_pred             EeCCCCEEEEEEEeeCCCCCCccCEEEEEEEeCC----CeeEEEEEeCCCCCeEecCCCCCCCCCCCceeEEEecceecc
Confidence            84  457999999999999999999999999863    478999999999999999999999999999999999999999


Q ss_pred             CCCcccCCCccHHHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057          250 NENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       250 ~~~~l~~~~~~~~~~~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      .+++||..+.++......++.+|+.+++.++|+++++++
T Consensus       242 ~~~llg~~g~g~~~~~~~l~~~R~~~aa~~~G~a~~al~  280 (577)
T 2z1q_A          242 VENVLGEIGKGHKIAFNVLNVGRYKLGAGAVGGAKRALE  280 (577)
T ss_dssp             GGGEESCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998864

>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina}

Probab=100.00  E-value=2.6e-45  Score=339.44  Aligned_cols=258  Identities=21%  Similarity=0.304  Sum_probs=229.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhhcCcccccccc----cC-CCC--CcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHH
Q 023057           26 SSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQ----SN-SFP--QDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYH   98 (288)
Q Consensus        26 ~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~----~~-~~~--~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~   98 (288)
                      +|++.++++|. ++++++|+|+++++.|...++++    .+ .+|  +  ++|++|++.||+++.+|++|||.|+++.++
T Consensus         2 ~m~~~~~~e~~-~l~~~~r~f~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~   78 (438)
T 3mkh_A            2 AIDFHLSASQK-GTYQAARSLARNLLMPARQTYLQHPPNSPLRFQSTQ--PTYAAAVSAGILKGQISPAHGGTGGTLIES   78 (438)
T ss_dssp             CCBCCCCHHHH-HHHHHHHHHHHHTHHHHHHHHTTSCTTCHHHHHTTH--HHHHHHHHTTTTGGGSCGGGTCCCCCHHHH
T ss_pred             CCCCCCCHHHH-HHHHHHHHHHHHhcCcHHHHHhhccccccCcCCCcH--HHHHHHHhCCCCCCCCCcccCCCCCCHHHH
Confidence            47789999999 99999999999999887655432    22 455  5  899999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcC--CeeEEEEecCCCCCC-----CCCCCeEEEE
Q 023057           99 CIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISG--EHVGALAMSEPNAGS-----DVVGMKCKAD  171 (288)
Q Consensus        99 ~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g--~~~~~~a~te~~~g~-----d~~~~~~~a~  171 (288)
                      +.++|++++.++++++.+..+. ++...+..+|+++ +++||+++++|  +.++|+++|||++|+     |...++|+|+
T Consensus        79 ~~v~eela~~~~~~~~~~~~~~-~~~~~l~~~g~~~-~~~~l~~~~~G~g~~~~~~a~tEp~~gs~~~~sd~~~~~t~A~  156 (438)
T 3mkh_A           79 AILVEECYSVEPSAALTIFATG-LGLTPINLAAGPQ-HAEFLAPFLSGEGSPLASLVFSEPGGVANALEKGAPGFQTTAR  156 (438)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHH-HHHHHHHHHCCGG-GHHHHGGGSSSCSCCCEEEECCCTTCCTTTTCTTSCCCSCEEE
T ss_pred             HHHHHHHHhhChhHHHHHHHhh-HHHHHHHhhCCHH-HHHHHHHHhcCCCCceEEEEEccCCCCCCccccccccceeEEE
Confidence            9999999999999887766654 5556677899999 99999999996  588999999999998     5888999999


Q ss_pred             EeCCeEEEeeEeeeeeCCC-----CCCEEEEEEEeCC------CCCCCceEEEEEeCCC-----CC-eEecccccccCCC
Q 023057          172 RVDGGYIINGNKMWCTNGP-----VAQTLVVYAKTDI------KAGSKGITAFIIEKGM-----PG-FSTAQKLDKLGMR  234 (288)
Q Consensus       172 ~~~~g~~l~G~k~~v~~~~-----~ad~~lv~a~~~~------~~~~~~~~~~lv~~~~-----~g-v~~~~~~~~~Gl~  234 (288)
                      +++|||+|||+|.|+||+.     .||+++|+++++.      .++..++++|+||++.     || +++.+.|+++|++
T Consensus       157 ~~g~g~~lnG~K~~is~a~~~~~~~Ad~~~v~a~~~~~~~~~~~~~~~g~~~flV~~~~~~~~~pG~v~v~~~~~~~G~r  236 (438)
T 3mkh_A          157 LEGDEWVINGEKMWATNCAGWDFKGCDLACVVCRDATTPLEEGQDPENKVMIILVTRADLDRNGEGSFEVLRHVATPGHT  236 (438)
T ss_dssp             EETTEEEEEEEECSCTTTTCTTSSCCSEEEEEEEECSSCCCTTCCGGGGEEEEEEEHHHHHHHCTTSEEEEECCCCSSCT
T ss_pred             EeCCEEEEEeEEEEecCCCccccccCcEEEEEEEecCcccCcccCCCCceEEEEEecCccccCCCCcEEecCcCCCcCCc
Confidence            9999999999999999997     8999999999853      1123478999999875     88 9999999999999


Q ss_pred             CCceeeEEeceeeeCCCCcccCCCccHHHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057          235 GSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       235 ~~~~~~v~~~~v~vp~~~~l~~~~~~~~~~~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      ++++++|.|+||+||++++||..+.++......++.+|+.+++.++|+++++++
T Consensus       237 ~~~~~~v~fddv~VP~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~lG~a~~al~  290 (438)
T 3mkh_A          237 SVSGPHVRYTNVRVPTKNVLCPAGQGAKVAFGAFDGSAVLVGAMGVGLMRAAFD  290 (438)
T ss_dssp             TCCCCEEEEEEEEEEGGGEEECTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEECcEEECHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999874

>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata}

Probab=100.00  E-value=1e-43  Score=328.91  Aligned_cols=257  Identities=23%  Similarity=0.412  Sum_probs=220.5

Q ss_pred             ccCCCCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCC-CCHHHHHHH
Q 023057           23 AAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLG-LGYLYHCIA  101 (288)
Q Consensus        23 ~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g-~~~~~~~~v  101 (288)
                      ....|++.+++++. ++++++++|+. .+.+.+.+.|+.+.+|.  ++|++|++.||+++.+|++|||.| .++.+++.+
T Consensus        12 ~~~~m~~~lt~e~~-~l~~~~r~~~~-~~~~~a~~~d~~~~~~~--~~~~~l~~~Gl~~l~~P~~~GG~gl~~~~~~~~v   87 (439)
T 3m9v_A           12 STTGLYAPVTPAGR-VLLDRLAAHLP-RIRSTAAEHDRDGTFPT--DTFDALRKDGLMGATVPAELGGLGVDRLYDVAVA   87 (439)
T ss_dssp             CCSTTSSCSSHHHH-HHHHHHHTTHH-HHHHHHHHHHHHTCCCH--HHHHHHHHTTGGGTTSCGGGTSCCCCCHHHHHHH
T ss_pred             CCCCCCCCCCHHHH-HHHHHHHHHHH-HHhhhHHHHHhcCCCCH--HHHHHHHHCCCccCCCChhhCCCCCCCHHHHHHH
Confidence            55668899999999 99999999986 47777888899999999  999999999999999999999999 899999999


Q ss_pred             HHHHHhhCCchhhHHHhhhhHHHHH--HHhcCCHHH---HHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCe
Q 023057          102 MEEISRASGSVGLSYGAHSNLCINQ--LVRHGSPAQ---KDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG  176 (288)
Q Consensus       102 ~e~l~~~~~~~~~~~~~~~~~~~~~--l~~~g~~~~---~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g  176 (288)
                      +|+++++++++++.+.+|...+..+  +..+|+++|   |++||+++.+|+.++|+++|||+.  +...+.   ++++||
T Consensus        88 ~eel~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~q~~~k~~~l~~l~~g~~~~~~a~tEp~~--~~~~~~---t~~~~g  162 (439)
T 3m9v_A           88 LLAVARADASTALALHMQLSRGLTLGYEWRHGDERARTLAERILRGMVAGDAVVCSGIKDHHT--AVTTLR---PDGAGG  162 (439)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTCCCEEEECEECTT--CCCEEE---ECSSSC
T ss_pred             HHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEeecCCCC--CCCcee---eccCCE
Confidence            9999999999998877775444443  456799999   999999999999999999999974  332222   236788


Q ss_pred             EEEeeEeeeeeCCCCCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCccc-
Q 023057          177 YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLG-  255 (288)
Q Consensus       177 ~~l~G~k~~v~~~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~-  255 (288)
                      |+|||+|+|+||+..||+++|+++++++++..++++|+||++.|||++.+.|+++|++++++++|.|+||+||++++|+ 
T Consensus       163 ~vlnG~K~~~s~a~~Ad~~~v~art~~~~~~~g~~~flVp~~~pGv~i~~~~~~~G~~~~~~~~v~fddv~VP~~~~lg~  242 (439)
T 3m9v_A          163 WLLSGRKTLVSMAPVGTHFVINARTDGTDGPPRLASPVVTRDTPGFTVLDNWDGLGMRASGTVDIVFDDCPIPADHVLMR  242 (439)
T ss_dssp             EEEEEEEEEETTGGGCSEEEECEEECC--CCCCEEEEEEETTCTTEEECCCCCCSSCTTSCCEEEEEEEEEECGGGEEEC
T ss_pred             EEEEeEEEeecCccccCEEEEEEEecCCCCCceeEEEEEECCCCCeEECCCcccCCcCCCCceeEEEeeeEcCHHHccCC
Confidence            9999999999999999999999998765555679999999999999999999999999999999999999999999998 


Q ss_pred             -CCCccHHHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057          256 -QEGKGVYVMMSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       256 -~~~~~~~~~~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                       ..+.++.........+|+.+++.++|+++++++
T Consensus       243 ~~~g~g~~~~~~~~~~~r~~~aa~~~G~a~~al~  276 (439)
T 3m9v_A          243 DPVGARNDAVLAGQTVSSVSVLGVYVGVAQAAYD  276 (439)
T ss_dssp             CC--CCCGGGHHHHHHHHGGGHHHHHHHHHHHHH
T ss_pred             CCCCchHHHHhhchHHHHHHHHHHHHHHHHHHHH
Confidence             556555433334556889999999999999874

>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.1e-43  Score=327.63  Aligned_cols=257  Identities=21%  Similarity=0.326  Sum_probs=218.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhhcCcccc---ccccc-----CCC-----CCcHHHHHHHHhCCCCCCCCCcCCCCCC
Q 023057           26 SSTSLLFDDTQLQFKESVGQFARENIAPRAA---NIDQS-----NSF-----PQDVNLWKLMGNFNLHGITAPQEYGGLG   92 (288)
Q Consensus        26 ~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~---~~d~~-----~~~-----~~~~~~~~~l~~~Gl~~~~~pe~~GG~g   92 (288)
                      .|++.+++++. ++++++++|+++++.|...   ++++.     ..+     +.  ++|++|++.||+++.+|+   |.|
T Consensus        18 ~m~~~~~~e~~-~l~~~~r~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~Gl~~l~~P~---G~g   91 (428)
T 2wbi_A           18 GQLFVQTRKGQ-EVLIKVKHFMKQHILPAEKEVTEFYVQNENSVDKWGKPLVID--KLKEMAKVEGLWNLFLPA---VSG   91 (428)
T ss_dssp             ----CCCHHHH-HHHHHHHHHHHHTHHHHHHHHHC----------CCSCCHHHH--HHHHHHHHTTCCSTTCHH---HHC
T ss_pred             cCCCCCCHHHH-HHHHHHHHHHHhhCCchhcchhHHhhhccccccccCCcccHH--HHHHHHHHCCCCeecCCC---CCC
Confidence            47788999999 9999999999998866554   44432     233     34  899999999999999999   889


Q ss_pred             CCHHHHHHHHHHHHhhCCc-hhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCC-CCCCCCCCeEEE
Q 023057           93 LGYLYHCIAMEEISRASGS-VGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPN-AGSDVVGMKCKA  170 (288)
Q Consensus        93 ~~~~~~~~v~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~-~g~d~~~~~~~a  170 (288)
                      +++.+.+.++|++++++.+ .++....+...+...|..+|+++|+++|||++++|+.++|+++|||+ +|||...+.|+|
T Consensus        92 ~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~G~~~~~~a~tEp~~aGsd~~~~~t~A  171 (428)
T 2wbi_A           92 LSHVDYALIAEETGKCFFAPDVFNCQAPDTGNMEVLHLYGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSI  171 (428)
T ss_dssp             CCHHHHHHHHHHHTTSTTHHHHTTCCTTHHHHHHHHHHHCCHHHHHHTHHHHHHTSSEEEEECCCTTSCTTSGGGCCCEE
T ss_pred             CCHHHHHHHHHHHHhhcchhhhHhhhccchhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEEecCCcCCCCcccceEEE
Confidence            9999999999999999743 23222222224566788899999999999999999999999999999 999999999999


Q ss_pred             EEeCCeEEEeeEeeeeeCCCC--CCEEEEEEEeCCCC--CCCceEEEEEeCCCCCeEecccccccCCCCCc---eeeEEe
Q 023057          171 DRVDGGYIINGNKMWCTNGPV--AQTLVVYAKTDIKA--GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSD---TCELVF  243 (288)
Q Consensus       171 ~~~~~g~~l~G~k~~v~~~~~--ad~~lv~a~~~~~~--~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~---~~~v~~  243 (288)
                      ++++|||+|||+|.|+||+..  ||+++|.++++++.  +++++++|+||.+.|||++.+.|+++|+++++   +++|.|
T Consensus       172 ~~~~~g~~lnG~K~~is~a~~~~Ad~~~v~art~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~~~~v~f  251 (428)
T 2wbi_A          172 QRDEDSYVINGKKWWSSGAGNPKCKIAIVLGRTQNTSLSRHKQHSMILVPMNTPGVKIIRPLSVFGYTDNFHGGHFEIHF  251 (428)
T ss_dssp             EEETTEEEEEEEEEEEETTTSTTEEEEEEEEECCCTTSCGGGCEEEEEEETTSTTEEEEEECCBTTBCCGGGCCEEEEEE
T ss_pred             EEeCCEEEEEeEEeccCCCCCCcCCEEEEEEEeCCccCCCCCceEEEEEECCCCcEEecCCCCccccCCCCCCCeEEEEe
Confidence            999999999999999999987  99999999986432  33468899999999999998899999999984   999999


Q ss_pred             ceeeeCCCCcccCCCccHHHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057          244 ENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       244 ~~v~vp~~~~l~~~~~~~~~~~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      +||+||++++||..+.++......++.+|+.+++.++|+++++++
T Consensus       252 ddv~VP~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~~G~a~~al~  296 (428)
T 2wbi_A          252 NQVRVPATNLILGEGRGFEISQGRLGPGRIHHCMRTVGLAERALQ  296 (428)
T ss_dssp             EEEEEEGGGBCSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CceEECHHHhcCCccchHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            999999999999988899888888999999999999999999874

>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea}

Probab=100.00  E-value=4.7e-44  Score=326.78  Aligned_cols=254  Identities=23%  Similarity=0.389  Sum_probs=220.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCC-CCHHHHHHHHHH
Q 023057           26 SSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLG-LGYLYHCIAMEE  104 (288)
Q Consensus        26 ~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g-~~~~~~~~v~e~  104 (288)
                      .+.+.++++|. ++++++++|+++ +.+.+.+.|+++.+|.  ++|++|++.||+++.+|++|||.| .++.+.+.++|+
T Consensus         4 ~~~~~lt~e~~-~~~~~~r~~~~~-~~~~a~~~d~~~~~p~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~~ee   79 (395)
T 3mxl_A            4 DLRAPLTPAGR-TVVDLLAGVIPR-ISAEAADRDRTGTFPV--EAFEQFAKLGLMGATVPAELGGLGLTRLYDVATALMR   79 (395)
T ss_dssp             SSSSCCSHHHH-HHHHHHTTTHHH-HHHHHHHHHHHTCCCH--HHHHHHHHHTGGGCSSCTTTTSCCCCCHHHHHHHHHH
T ss_pred             ccccCCCHHHH-HHHHHHHHHHHH-HhhchHHHhhhCCCCH--HHHHHHHHCCCcCcCCChhhCCCCCcCHHHHHHHHHH
Confidence            35577999999 999999999874 7788888999999999  999999999999999999999999 899999999999


Q ss_pred             HHhhCCchhhHHHhhhhHHHHHH--HhcCCHHHH---HhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEE
Q 023057          105 ISRASGSVGLSYGAHSNLCINQL--VRHGSPAQK---DKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYII  179 (288)
Q Consensus       105 l~~~~~~~~~~~~~~~~~~~~~l--~~~g~~~~~---~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l  179 (288)
                      ++++++++++.+..|...+..++  ..+|+++||   ++||+++.+|+.++|+++|||++|+  ..++   ++++|||+|
T Consensus        80 l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~qk~~~~~~l~~~~~g~~~~~~a~tEp~~~~--~~~~---t~~~~g~~l  154 (395)
T 3mxl_A           80 LAEADASTALAWHVQLSRGLTLTYEWQHGTPPVRAMAERLLRAMAEGEAAVCGALKDAPGVV--TELH---SDGAGGWLL  154 (395)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHTSCCEECCCSBCTTCC--CEEE---ECSSSCEEE
T ss_pred             HHhhCcHHHHHHHHHHHHHHHHHHHhhcCCHHHHhHHHHHHHHHhcCCcEEEEEecCCCCCC--CceE---EecCCEEEE
Confidence            99999999988877754444433  367999999   9999999999999999999998652  2222   236788999


Q ss_pred             eeEeeeeeCCCCCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCccc--CC
Q 023057          180 NGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLG--QE  257 (288)
Q Consensus       180 ~G~k~~v~~~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~--~~  257 (288)
                      ||+|.|+||+..||+++|.++++++++.+++++|+||++.|||++.+.|+++|++++++++|.|+||+||++++++  ..
T Consensus       155 nG~K~~is~a~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~  234 (395)
T 3mxl_A          155 SGRKVLVSMAPIATHFFVHAQRRDDDGSVFLAVPVVHRDAPGLTVLDNWDGLGMRASGTLEVVFDRCPVRADELLERGPV  234 (395)
T ss_dssp             EEEEEEETTGGGCSEECCCEEEECTTSCEEEECCCEETTCTTEEEECCCCBSSCTTSCCEEEEEEEEEECGGGCCEEEES
T ss_pred             eeEEEEecCccccCEEEEEEEeCCCCCCCceEEEEEECCCCceEeCCCchhcCCCCCCcceEEEcceEcCHHHhcCCCCC
Confidence            9999999999999999999998765455578899999999999998999999999999999999999999999998  66


Q ss_pred             CccHHHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057          258 GKGVYVMMSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       258 ~~~~~~~~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      +.++.........+|+.+++.++|+++++++
T Consensus       235 g~g~~~~~~~~~~~r~~~aa~~~G~a~~al~  265 (395)
T 3mxl_A          235 GARRDAVLAGQTVSSITMLGIYAGIAQAARD  265 (395)
T ss_dssp             SCCCTTHHHHHHHHHGGGHHHHHHHHHHHHH
T ss_pred             CccHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            6665544444566899999999999999874

>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP}

Probab=100.00  E-value=4.4e-41  Score=308.98  Aligned_cols=243  Identities=18%  Similarity=0.247  Sum_probs=204.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHH
Q 023057           26 SSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEI  105 (288)
Q Consensus        26 ~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l  105 (288)
                      -.++.+++++. ++++++++|+++ +.+...+.|+.+.+|.  ++|++|++.||+++.+|++|||.|+++.+.+.++|++
T Consensus        13 ~~~~~~~~~~~-~l~~~~r~~~~~-~~~~a~~~d~~~~~p~--~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eel   88 (414)
T 2or0_A           13 GRENLYFQGMG-RVLDRIEVVAEE-IRGQAVQSEADCRLTD--AAAGLLRDSGAIRLLQPRLYGGYEVHPREFAETVMGV   88 (414)
T ss_dssp             ----------C-HHHHHHHHTHHH-HHHHHHHHHHHTSCCH--HHHHHHHHHTGGGTTSCGGGTCCCCCHHHHHHHHHHH
T ss_pred             cccCCCCccHH-HHHHHHHHHHHH-HHHhHHHHHhcCCCCH--HHHHHHHHCCCchhcCchhhCCCCCCHHHHHHHHHHH
Confidence            35577899999 999999999876 7777778888899999  9999999999999999999999999999999999999


Q ss_pred             HhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeee
Q 023057          106 SRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMW  185 (288)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~  185 (288)
                      +++++++++.+..|. .+...+..+|+++|+++|++   +|+.++|++++ |         .++|++++|||+|||+|.|
T Consensus        89 a~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~---~g~~~~a~a~t-p---------~t~A~~~~~g~~lnG~K~~  154 (414)
T 2or0_A           89 AALDGASGWVTGIVG-VHPWELAFADPQVQEEIWGE---DNDTWMASPYA-P---------MGVATPVDGGYVLKGRWSF  154 (414)
T ss_dssp             HHHCHHHHHHHHHHT-THHHHHTTSCHHHHHHHHSS---CTTCCEECCCS-C---------CEEEEEETTEEEEEEEEEE
T ss_pred             HhhChHHHHHHHHHH-HHHHHHHhCCHHHHHHHHcc---CCCeEEEeccC-C---------CceeEEECCeEEEEeeEec
Confidence            999999988777775 66778889999999999999   69988998887 4         4799999999999999999


Q ss_pred             eeCCCCCCEEEEEEEeCCCCCCC---ceEEEEEeCCCCCeEec-ccccccCCCCCceeeEEeceeeeCCCCcccC-----
Q 023057          186 CTNGPVAQTLVVYAKTDIKAGSK---GITAFIIEKGMPGFSTA-QKLDKLGMRGSDTCELVFENCFVPNENVLGQ-----  256 (288)
Q Consensus       186 v~~~~~ad~~lv~a~~~~~~~~~---~~~~~lv~~~~~gv~~~-~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~-----  256 (288)
                      +||+..||+++|.++++++++.+   ++++|+||++  |+++. +.|+++|++++++++|.||||+||++++++.     
T Consensus       155 is~a~~Ad~~~v~a~~~~~~g~~~~~g~~~flV~~~--gv~v~~~~~~~~G~r~~~~~~v~fd~v~VP~~~~lg~~~~~~  232 (414)
T 2or0_A          155 SSGTDHCQWAFLGAMVGDGEGGIATPSSLHVILPRT--DYQIVEDTWDVIGLRGTGSKDLIVDGAFVPGYRTLNAAKVMD  232 (414)
T ss_dssp             ETTGGGCSEEEEEEEECC-----CCCSEEEEEEEGG--GCEEETTCCCBSSCGGGCCEEEEEEEEEEEGGGEEEHHHHHH
T ss_pred             cCCCchhhEEEEEEEecCCCCCcccceeEEEEEEhh--hcEEecCCCccccCcccCCCcEEEccEEecHHHeeccccccc
Confidence            99999999999999986433333   7899999997  89998 8899999999999999999999999999975     


Q ss_pred             ---CC----ccHHHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057          257 ---EG----KGVYVMMSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       257 ---~~----~~~~~~~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                         ++    .++.+....++..|+.+++.++|+++++++
T Consensus       233 g~~~g~~~~~g~~~~~~~~~~~r~~~aa~~lG~a~~al~  271 (414)
T 2or0_A          233 GRAQKEAGRPEPLFNMPYSCMFPLGITAAVIGITEGALA  271 (414)
T ss_dssp             SHHHHHHTCSCSGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCccccCCCccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence               11    233344556788999999999999999874

>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A*

Probab=100.00  E-value=3.6e-40  Score=303.61  Aligned_cols=251  Identities=18%  Similarity=0.242  Sum_probs=213.4

Q ss_pred             cccccccccCCCCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCH
Q 023057           16 TKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGY   95 (288)
Q Consensus        16 ~~~~~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~   95 (288)
                      -++-.+.-...+.+.+++  . ++++++++|++ .+.+...+.|+.+.+|.  ++|++|++.||+++.+|++|||.|+++
T Consensus        20 ~~~~~~~~~~~~~~~~~~--~-~l~~~~r~~~~-~~~~~a~~~d~~~~~p~--~~~~~l~~~Gl~~l~~P~e~GG~g~~~   93 (422)
T 2jbr_A           20 FQPIRLVYTHAQTPDVSG--V-SMLEKIQQILP-QIAKNAESAEQLRRVPD--ENIKLLKEIGLHRAFQPKVYGGLEMSL   93 (422)
T ss_dssp             ----CCCSSSCCCCCCSS--C-CHHHHHHHHHH-HHHHTHHHHHHHTSCCH--HHHHHHHHTTGGGSSSCGGGTCCCCCH
T ss_pred             hcchheeeecCCCCCCCH--H-HHHHHHHHHHH-HHHHhhHHHHHcCCCCH--HHHHHHHHCCchhcCCchhcCCCCCCH
Confidence            344444455555666666  4 67999999987 47777778888899999  999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCC
Q 023057           96 LYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDG  175 (288)
Q Consensus        96 ~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~  175 (288)
                      .+.+.++|+++++++++++.+..|. .+...+..+|+++|+++|++.   |+.++|++++ |         .++|++++|
T Consensus        94 ~~~~~v~eela~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~---g~~~~a~a~t-p---------~t~A~~~~~  159 (422)
T 2jbr_A           94 PDFANCIVTLAGACAGTAWAFSLLC-THSHQIAMFSKQLQDEIWLKD---PDATASSSIA-P---------FGKVEEVEG  159 (422)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHH-HHHHHHTTSCHHHHHHHHTTC---TTCCEEEECS-C---------CSEEEEETT
T ss_pred             HHHHHHHHHHHhhCcCHHHHHHHHH-HHHHHHHhCCHHHHHHHHccC---CCeEEEeecC-C---------CeeEEEeCC
Confidence            9999999999999999988776664 667788899999999999996   8888999887 3         368999999


Q ss_pred             eEEEeeEeeeeeCCCCCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCccc
Q 023057          176 GYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLG  255 (288)
Q Consensus       176 g~~l~G~k~~v~~~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~  255 (288)
                      ||+|||+|.|+||+..||+++|.++++++++.+++++|+||++  |+++.+.|+++|++++++++|+|+||+||++++++
T Consensus       160 g~~lnG~K~~is~a~~Ad~~~v~a~~~~~~g~~g~~~flV~~~--gv~v~~~~~~~G~r~~~~~~v~fddv~VP~~~~lg  237 (422)
T 2jbr_A          160 GIILNGDYGWSSGCDHAEYAIVGFNRFDADGNKIYSFGVIPRS--DYEIVDNWYAQAIKSSGSKMLKLVNVFIPEYRISK  237 (422)
T ss_dssp             EEEEEEEEEEETTGGGCSEEEEEEEEECTTSCEEEEEEEEEGG--GCEEECCCCBSSSGGGCCEEEEEEEEEEEGGGEEE
T ss_pred             EEEEeeeEeeecCCccccEEEEEEEecCCCCCceeEEEEEEcC--ceEEeCCccccCcCCCCCCcEEEeeEEecHHHeec
Confidence            9999999999999999999999999864334457889999997  89998889999999999999999999999999997


Q ss_pred             CC--------Ccc-----HHHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057          256 QE--------GKG-----VYVMMSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       256 ~~--------~~~-----~~~~~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      ..        +.+     +.+....+..+|+.+++.++|+++++++
T Consensus       238 ~~~~~~g~~~g~g~~~~~~~~~~~~~~~~r~~~aa~~lG~a~~al~  283 (422)
T 2jbr_A          238 AKDMMEGKSAGFGLYPDSKIFYTPYRPYFASGFSAVSLGIAERMIE  283 (422)
T ss_dssp             HHHHHHTCSTTTTSCTTCSSSSSCHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             ccccccCCCCcccccCCCcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence            63        444     4444566788999999999999999874

>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A

Probab=100.00  E-value=2.1e-39  Score=295.89  Aligned_cols=232  Identities=19%  Similarity=0.296  Sum_probs=203.1

Q ss_pred             HHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhCCchhhHHH
Q 023057           38 QFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYG  117 (288)
Q Consensus        38 ~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~  117 (288)
                      ++++++++|+++ +.+...+.|+.+.+|.  ++|++|++.||+++.+|++|||.|+++.+.+.++|+++++++++++.+.
T Consensus        11 ~l~~~~~~~~~~-~~~~~~~~d~~~~~p~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~~~~~~~~~~   87 (394)
T 2rfq_A           11 EVMQRLDALLPT-LRERAQETEDLRRIPD--DSMKALQETGFFRLLQPEQWGGYQADPVLFYSAVRKIASACGSTGWVSS   87 (394)
T ss_dssp             HHHHHHHHHHHH-HHHTHHHHHHHTSCCH--HHHHHHHHHTGGGTTSCGGGTCCCCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HHHhHHHHHhcCCCCH--HHHHHHHHCCCceecCchhhCCCCCCHHHHHHHHHHHHhhChhHHHHHH
Confidence            689999999874 7777778888899999  9999999999999999999999999999999999999999999998777


Q ss_pred             hhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeeeeeCCCCCCEEEE
Q 023057          118 AHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVV  197 (288)
Q Consensus       118 ~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v~~~~~ad~~lv  197 (288)
                      .|. .+...+..+|+++|+++|++   +|+.++|++++ |         .++|++++|||+|||+|.|+||+..||+++|
T Consensus        88 ~~~-~~~~~l~~~g~~~q~~~~l~---~g~~~~~~a~t-p---------~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v  153 (394)
T 2rfq_A           88 IIG-VHNWHLALFSQQAQEDVWGN---DTDVRISSSYA-P---------MGAGQVVDGGYTVNGAWAWSSGCDHASWAVL  153 (394)
T ss_dssp             HHH-HHHHHHTTSCHHHHHHHHSS---CTTCCEEEECS-C---------SEEEEEETTEEEEEEEEEEETTGGGCSEEEE
T ss_pred             HHH-HHHHHHHhCCHHHHHHHhCC---CCCeEEEeccC-C---------CceEEEeCCeEEEeeeEeccCCCcccceEEE
Confidence            765 66778889999999999999   68888999987 3         4799999999999999999999999999999


Q ss_pred             EEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccC--------CC----ccHHHHH
Q 023057          198 YAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQ--------EG----KGVYVMM  265 (288)
Q Consensus       198 ~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~--------~~----~~~~~~~  265 (288)
                      .++++++++++++++|+||++  |+++.+.|+++|++++++++|.|+||+||++++++.        ++    .+..+..
T Consensus       154 ~a~~~~~g~~~~~~~flV~~~--gv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~~~g~~~g~~~~~g~~~~~  231 (394)
T 2rfq_A          154 GGPVIKDGRPVDFVSFLIPRE--DYRIDDVWNVVGLRGTGSNTVVVEDVFVPTHRVLSFKAMSNLTAPGLERNTAPVYKM  231 (394)
T ss_dssp             EEEEEETTEEEEEEEEEEEGG--GCEEECCCCBSSCGGGCCEEEEEEEEEEEGGGEEEHHHHHTTCCGGGTTCCCGGGGS
T ss_pred             eeeecCCCCCCceeEEEEEhh--hcEEeCCccccccccCCCCceEEcceEcChHHhcccccccccCCCCcccCCCccccc
Confidence            999842211236889999997  899988899999999999999999999999999975        22    2344445


Q ss_pred             HhhhHHHHHHHHHHHHHhhcccC
Q 023057          266 SGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       266 ~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      ..+...|+..++.++|+++++++
T Consensus       232 ~~~~~~r~~~aa~~~G~a~~al~  254 (394)
T 2rfq_A          232 PWGTIHPTTISAPIVGMAYGAYD  254 (394)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHH
Confidence            66778999999999999999874

>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*

Probab=100.00  E-value=2.3e-34  Score=277.49  Aligned_cols=246  Identities=18%  Similarity=0.219  Sum_probs=200.4

Q ss_pred             CCC-HHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhh
Q 023057           30 LLF-DDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA  108 (288)
Q Consensus        30 ~~s-~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~~~  108 (288)
                      .++ +|+. ++++++++|+++.... ....+....+++  +.|+.|++.|++. .+|+++|   .+..+...+.+++   
T Consensus        25 ~~~~~e~~-~lr~~vr~~l~~~~~~-~~~~~~~~~~~~--~~~~~l~~~g~l~-~~p~e~G---~~~~~~~~v~e~~---   93 (659)
T 1w07_A           25 WAGSRHAF-EVSDRIARLVASDPVF-EKSNRARLSRKE--LFKSTLRKCAHAF-KRIIELR---LNEEEAGRLRHFI---   93 (659)
T ss_dssp             HHSSHHHH-HHHHHHHHHHHTCGGG-CCTTTTSSCHHH--HHHHHHHHHHHHH-HHHHHTT---CCHHHHHHHHHHH---
T ss_pred             HCCChHHH-HHHHHHHHHHhcCccc-ccCCccCCChHH--HHHHHHHHHHHHH-HhHHHhC---CCchHHHHHHHHh---
Confidence            344 7788 9999999999875322 111122234455  8999999998887 4788887   3567777776665   


Q ss_pred             CCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEe--CCeEEEe-----e
Q 023057          109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIIN-----G  181 (288)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~--~~g~~l~-----G  181 (288)
                      +.+++  +..|..++...|..+|+++|+++|||++++|+.++|+++|||++|||...++|+|+++  +|||+||     |
T Consensus        94 ~~~~~--~~~~~~l~~~~l~~~Gt~eqk~~~L~~i~~Ge~~~~~a~TEp~~GSd~~~l~TtA~~d~~~~g~vLntP~~~G  171 (659)
T 1w07_A           94 DQPAY--VDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTA  171 (659)
T ss_dssp             CCCCH--HHHHHHTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSGGG
T ss_pred             ccchh--hhhHHhHHHHHHHHcCCHHHHHHHhhHHhcCCEEEEEEecCCCCCCCcccceeEEEEcCCCCEEEEcCCCCCe
Confidence            34444  5566446677888999999999999999999999999999999999999999999998  6899999     9


Q ss_pred             EeeeeeC-CCCCCEEEEEEEeCCCCCCCceEEEEEeC-C------CCCeEecccccccC---CCCCceeeEEeceeeeCC
Q 023057          182 NKMWCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIEK-G------MPGFSTAQKLDKLG---MRGSDTCELVFENCFVPN  250 (288)
Q Consensus       182 ~k~~v~~-~~~ad~~lv~a~~~~~~~~~~~~~~lv~~-~------~~gv~~~~~~~~~G---l~~~~~~~v~~~~v~vp~  250 (288)
                      +|+|++| +..||+++|+|+++.++++.++++|+||. +      .|||++.+.|+++|   +++++++.|.|+||+||+
T Consensus       172 ~K~~is~~a~~Ad~~lV~Ar~~~~~~~~G~~~flVp~r~~~~~~~~pGV~v~~~~~~~G~~~~~g~~~~~v~fd~VrVP~  251 (659)
T 1w07_A          172 SKWWPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPR  251 (659)
T ss_dssp             SEECCTTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCBSSSSGGGGSCCEEEEESSEEEEG
T ss_pred             EEEeecCCCCCCCEEEEEEEECCCCCCCCeEEEEEEccccCCCCCCCCeEEecCccCccccccCCCCceEEEeccEEECH
Confidence            9999999 89999999999986433334788999995 5      69999999999999   999999999999999999


Q ss_pred             CCcccC------CCccH------HHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057          251 ENVLGQ------EGKGV------YVMMSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       251 ~~~l~~------~~~~~------~~~~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      +++|+.      .+.++      ......+..+|+.+++.++|++++|++
T Consensus       252 ~~lLg~~~~v~~~g~~~~~~~~~~~~~~~l~~~R~~~aa~~~G~a~~al~  301 (659)
T 1w07_A          252 DQMLMRLSKVTREGEYVPSDVPKQLVYGTMVYVRQTIVADASNALSRAVC  301 (659)
T ss_dssp             GGBCCSSEEECTTCCEEECSSCGGGCTTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCcCccCCCCceecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999985      45443      234566789999999999999998864

>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A*

Probab=99.98  E-value=4.1e-32  Score=255.91  Aligned_cols=207  Identities=22%  Similarity=0.343  Sum_probs=180.1

Q ss_pred             cHHHHHHHHhCCCCCCCC--CcCCCCCCCCHHHHHHHHHHHHhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHh
Q 023057           67 DVNLWKLMGNFNLHGITA--PQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLI  144 (288)
Q Consensus        67 ~~~~~~~l~~~Gl~~~~~--pe~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~  144 (288)
                      .+++++.+++.||+++.+  |+++||.+    ........++..++...++..++. .+...|..+| ++|+++|+|++.
T Consensus        88 ~~~~~~~l~e~Gl~~l~~~~p~~~Gg~~----~~~~~~~~~~~~~~~~~~p~~~t~-~~~~~L~~~g-~eqk~~~lp~l~  161 (541)
T 3djl_A           88 WHLLMQALCTNRVHNLAWEEDARSGAFV----ARAARFMLHAQVEAGSLCPITMTF-AATPLLLQML-PAPFQDWTTPLL  161 (541)
T ss_dssp             HHHHHHHHHHTTTTTGGGSTTCCTTHHH----HHHHHHHHHHHHCSTTHHHHHHHH-HHHHHHHHHC-CGGGGGGHHHHT
T ss_pred             HHHHHHHHHhCCcccCCCCCCCCCCcHH----HHHHHHHHHHHHHHhhhcHHHHHH-HHHHHHHHcC-HHHHHHHHHHHh
Confidence            457889999999999999  68999543    233333444455555555655665 4566778888 999999999999


Q ss_pred             cCCe-------------eEEEEecCCCCCCCCCCCeEEEEEe-CCeEEEeeEeeeeeCCCCCCEEEEEEEeCCCCCCCce
Q 023057          145 SGEH-------------VGALAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGI  210 (288)
Q Consensus       145 ~g~~-------------~~~~a~te~~~g~d~~~~~~~a~~~-~~g~~l~G~k~~v~~~~~ad~~lv~a~~~~~~~~~~~  210 (288)
                      +|+.             ++|+++|||++|||...++|+|+++ +|+|+|||+|+|+| +..||+++|+|+++     +++
T Consensus       162 sge~~p~~~~~~~~~g~~~~~a~TEp~~GSDl~~~~T~A~~~~~g~y~LnG~K~f~S-a~~Ad~~lVlArt~-----~Gi  235 (541)
T 3djl_A          162 SDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHKWFFS-VPQSDAHLVLAQTA-----GGL  235 (541)
T ss_dssp             CSCCCCCSSCGGGSSSCCEEEECCBTTBSSCGGGCCCEEEECTTSCEEEEEEEEEEE-CTTSSEEEEEEEET-----TEE
T ss_pred             CCCcccccccccccccceeEEEeccCCcCCCcccceeEEEEcCCCeEEEEEEEEeec-ccccCEEEEEEEEC-----Cce
Confidence            9998             7899999999999999999999999 78899999999999 89999999999986     378


Q ss_pred             EEEEEeCCCC-----CeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHHHHHhhhHHHHHHHHHHHHHhhc
Q 023057          211 TAFIIEKGMP-----GFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQA  285 (288)
Q Consensus       211 ~~~lv~~~~~-----gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~~~~~~~~~r~~~aa~~~G~a~~  285 (288)
                      ++|+||++.|     ||++.+.|+++|++++++++|.|+||+   ++++|.++.|+..+...++.+|+..++.++|++++
T Consensus       236 s~flVp~~~p~~~~~Gv~i~~~~~~~G~rgt~s~~v~fddv~---~~llG~~g~G~~~~~~~l~~~Rl~~aa~~~G~a~~  312 (541)
T 3djl_A          236 SCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASCEVEFQDAI---GWLLGLEGEGIRLILKMGGMTRFDCALGSHAMMRR  312 (541)
T ss_dssp             EEEEEESBCTTSCBCSEEEEEECCCSSCTTSCEEEEEEEEEE---EEEESSTTCHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEecCCCCCCcCCeEEeeccccCCCcCCceeEEEEccce---eeeeecCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998     999999999999999999999999996   78999999999999999999999999999999998


Q ss_pred             ccC
Q 023057          286 PVR  288 (288)
Q Consensus       286 al~  288 (288)
                      +++
T Consensus       313 al~  315 (541)
T 3djl_A          313 AFS  315 (541)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            864

>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*

Probab=99.96  E-value=7.5e-30  Score=245.88  Aligned_cols=241  Identities=17%  Similarity=0.250  Sum_probs=179.3

Q ss_pred             CHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCc------HHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHH
Q 023057           32 FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQD------VNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEI  105 (288)
Q Consensus        32 s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~------~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l  105 (288)
                      +++.. ++++.+++|+.+.  |.-..... ..+...      .+..+.|.+. |      +++||.+  ..+. .+.+++
T Consensus        26 ~~~~~-~~r~~~~~~l~~~--p~~~~~~~-~~~~~~e~~~~~~~~~~~l~~~-~------~~~~~~~--~~~~-~~~~~~   91 (661)
T 2ddh_A           26 SPENT-RRRREIENLILND--PDFQHEDY-NFLTRSQRYEVAVKKSATMVKK-M------REYGISD--PEEI-MWFKNS   91 (661)
T ss_dssp             SHHHH-HHHHHHHHHHHTC--GGGCCSCG-GGSCHHHHHHHHHHHHHHHHHH-H------HHTTCCC--HHHH-HHHHHH
T ss_pred             ChhHH-HHHHHHHHHHhcC--cccccCCc-CCCCHHHHHHHHHHHHHHHHHH-H------HHcCCCC--chHH-HHHHHH
Confidence            45667 8899999998765  22111000 011110      0112333333 2      5567755  3332 336777


Q ss_pred             HhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEe--CCeEEEe---
Q 023057          106 SRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIIN---  180 (288)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~--~~g~~l~---  180 (288)
                      .....+.  .+..|..++...|..+|+++|+++|||++.+|+.++|+++|||++|||...++|+|+++  +|||+||   
T Consensus        92 ~~~~~~~--~~~~h~~l~~~~i~~~Gt~eq~~~~L~~i~~Ge~~g~~a~TE~g~GSd~~~l~TtA~~d~~~~~~vLntP~  169 (661)
T 2ddh_A           92 VHRGHPE--PLDLHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPT  169 (661)
T ss_dssp             HHTTCCC--TTHHHHHTHHHHHC-CCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCS
T ss_pred             hccchhh--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEeeccCCcCcCcccceeEEEEcCCCCeEEEcCCC
Confidence            6644333  34566546778899999999999999999999999999999999999999999999998  7899999   


Q ss_pred             --eEeeeeeC-CCCCCEEEEEEEeCCCCCCCceEEEEEeC-C------CCCeEecccccccCCCCCceeeEEeceeeeCC
Q 023057          181 --GNKMWCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIEK-G------MPGFSTAQKLDKLGMRGSDTCELVFENCFVPN  250 (288)
Q Consensus       181 --G~k~~v~~-~~~ad~~lv~a~~~~~~~~~~~~~~lv~~-~------~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~  250 (288)
                        |+|+|++| +..||+++|+|+++.++++.++.+|+||. +      .|||++.+.|+++|+++++++.|.|+||+||+
T Consensus       170 ~~G~K~wis~~a~~Ad~~vV~Ar~~~~~~~~G~~~FlVp~rd~~~~~~~pGV~v~~~~~k~Gl~g~~~~~v~Fd~VrVP~  249 (661)
T 2ddh_A          170 VTSIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFGYEEMDNGYLKMDNYRIPR  249 (661)
T ss_dssp             STTSEECCTTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCCSSCTTCCCEEEEESSEEEEG
T ss_pred             CCeEEEecCCCcccCCEEEEEEEEccCCCCCceEEEEEecccccCCCCCCCeEEecCcccccCCCCcceEEEeccEEECH
Confidence              99999999 88999999999986433345788999994 4      79999999999999999999999999999999


Q ss_pred             CCcccCC------Ccc-----HHHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057          251 ENVLGQE------GKG-----VYVMMSGLDLERLVLAAGPLGIMQAPVR  288 (288)
Q Consensus       251 ~~~l~~~------~~~-----~~~~~~~~~~~r~~~aa~~~G~a~~al~  288 (288)
                      +++|+..      +.+     +......+..+|+.+++.++|++++|++
T Consensus       250 ~~lLg~~~~v~~~G~~~~~~~~~~~~~~l~~~R~~iaa~~~G~a~~al~  298 (661)
T 2ddh_A          250 ENMLMKYAQVKPDGTYVKPLSNKLTYGTMVFVRSFLVGNAAQSLSKACT  298 (661)
T ss_dssp             GGBCCSSCEECTTCCEECCC--------CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCcccccCCCCceeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999863      322     4556677889999999999999998863

>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1

Probab=99.93  E-value=1.2e-25  Score=209.51  Aligned_cols=162  Identities=15%  Similarity=0.233  Sum_probs=128.5

Q ss_pred             HHHHhcCC--HHHHHhhchhHhcCCeeEEEEecCCCCC--------CCC-CCCeEEEEEeCCeEEEeeEeeeeeCCCCCC
Q 023057          125 NQLVRHGS--PAQKDKYLPKLISGEHVGALAMSEPNAG--------SDV-VGMKCKADRVDGGYIINGNKMWCTNGPVAQ  193 (288)
Q Consensus       125 ~~l~~~g~--~~~~~~~l~~~~~g~~~~~~a~te~~~g--------~d~-~~~~~~a~~~~~g~~l~G~k~~v~~~~~ad  193 (288)
                      ..+..+|+  ++|+++||+++++|+.+.|+++|||+.+        ||+ ..++ ++++++|||+|||+|.|+||+..||
T Consensus       118 ~~~~~~Gt~~~eqk~~~L~~l~~Ge~~~a~a~TEP~~~rs~~~~~gSD~~~~~~-~a~r~gdg~vlnG~K~~iT~a~~Ad  196 (490)
T 1u8v_A          118 EIDQKYGTNYHKNFTEYLKYIQENDLIVDGAMTDPKGDRGLAPSAQKDPDLFLR-IVEKREDGIVVRGAKAHQTGSINSH  196 (490)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHTCCEEEECCCCCSCTTSCGGGCSSTTSSCE-EEEECSSEEEEEEEECSCTTCTTCS
T ss_pred             hHHHHhCCCHHHHHHHHHHHHHhCCceeeeeeeCCCCCCcccccccCCcccceE-EEEEECCEEEEEeEEEEeeCCcccC
Confidence            34568999  9999999999999999999999999864        664 3344 8889999999999999999999999


Q ss_pred             EEEEEEEeCCC-CCCCceEEEEEeCCCCCeEecc---cccc----------cCC-CC-CceeeEEeceeeeCCCCcc--c
Q 023057          194 TLVVYAKTDIK-AGSKGITAFIIEKGMPGFSTAQ---KLDK----------LGM-RG-SDTCELVFENCFVPNENVL--G  255 (288)
Q Consensus       194 ~~lv~a~~~~~-~~~~~~~~~lv~~~~~gv~~~~---~~~~----------~Gl-~~-~~~~~v~~~~v~vp~~~~l--~  255 (288)
                      +++|+++++.+ +..+..++|+||.+.|||++..   .+++          +|+ +. ..++.|.||||+||++++|  |
T Consensus       197 ~~iV~art~~~~~~~~~~s~flVp~d~pGv~v~~~r~~~~~~~~~~~~d~~lg~~r~~~~~~~v~FddV~VP~e~vl~~g  276 (490)
T 1u8v_A          197 EHIIMPTIAMTEADKDYAVSFACPSDADGLFMIYGRQSCDTRKMEEGADIDLGNKQFGGQEALVVFDNVFIPNDRIFLCQ  276 (490)
T ss_dssp             EEEECCSSCCCGGGGGGCEEEEEETTCTTEEEEECCCTTGGGGGSTTCCGGGSSSSCCCCCEEEEEEEEEEEGGGEEEES
T ss_pred             EEEEEEecCCCCCCCCeEEEEEEECCCCCEEEEecccccccccccccccCCccccccCCceEEEEECceEeCHHHccCCC
Confidence            99999987532 1223578999999999999943   3433          565 53 5678899999999999998  6


Q ss_pred             CCCccHHHHHHhhhHHHHHHHH-------HHHHHhhccc
Q 023057          256 QEGKGVYVMMSGLDLERLVLAA-------GPLGIMQAPV  287 (288)
Q Consensus       256 ~~~~~~~~~~~~~~~~r~~~aa-------~~~G~a~~al  287 (288)
                      ..+.++......+...|+..++       .++|++++++
T Consensus       277 ~~~~g~~~~~~~~~~~r~~~~a~~~~~~~~~lG~a~~~~  315 (490)
T 1u8v_A          277 EYDFAGMMVERFAGYHRQSYGGCKVGVGDVVIGAAALAA  315 (490)
T ss_dssp             CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666777666777777776655       4467776553

>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A*

Probab=99.92  E-value=3.6e-24  Score=199.26  Aligned_cols=153  Identities=20%  Similarity=0.287  Sum_probs=119.8

Q ss_pred             CHHHHHhhchhHhcCCeeEEEEecCCCCC--------CCCCCCeEEEE-EeCCeEEEeeEeeeeeCCCCCCEEEEEEEeC
Q 023057          132 SPAQKDKYLPKLISGEHVGALAMSEPNAG--------SDVVGMKCKAD-RVDGGYIINGNKMWCTNGPVAQTLVVYAKTD  202 (288)
Q Consensus       132 ~~~~~~~~l~~~~~g~~~~~~a~te~~~g--------~d~~~~~~~a~-~~~~g~~l~G~k~~v~~~~~ad~~lv~a~~~  202 (288)
                      .++|+++|||++++|+.+.|+++|||+.|        +|+. +.++++ +++|||+|||+|.|+|| ..||+++|+++++
T Consensus       122 ~~eqk~~~L~~l~~Ge~~~a~a~TEP~~grs~~~s~gsd~~-~~~~~~~~~gdg~VlnG~K~~iT~-~~Ad~~iV~art~  199 (481)
T 2yyk_A          122 FAENVRNYYRYLRDQDLATTHALTNPQVNRARPPSGQPDPY-IPVGVVKQTEKGIVVRGARMTATF-PLADEVLIFPSIL  199 (481)
T ss_dssp             GHHHHHHHHHHHHHHTCCEEEEECCCCCCTTC----CCCSC-SBCEEEEECSSEEEEEEEEEEEEC-CCSSEEEECCCSC
T ss_pred             HHHHHHHHHHHHHcCCeEEEEeeECCCCCCCCCccccCCcc-cceEEEEEECCEEEEEeEEEEecc-ccccEEEEEEecC
Confidence            46999999999999999999999999976        5654 455654 78999999999999999 9999999999986


Q ss_pred             CCC-CCCceEEEEEeCCCCCeEec--ccccc--------cCCCC-CceeeEEeceeeeCCCCcc--cCCCccHHHH--HH
Q 023057          203 IKA-GSKGITAFIIEKGMPGFSTA--QKLDK--------LGMRG-SDTCELVFENCFVPNENVL--GQEGKGVYVM--MS  266 (288)
Q Consensus       203 ~~~-~~~~~~~~lv~~~~~gv~~~--~~~~~--------~Gl~~-~~~~~v~~~~v~vp~~~~l--~~~~~~~~~~--~~  266 (288)
                      .++ ..+++++|+||.+.|||++.  +.+..        +|.+. .+++.|.||||+||++++|  |..+.++...  ..
T Consensus       200 ~~~~~~~~~s~flVp~dtpGv~v~~r~~~~~~~s~~d~~lg~r~~~~~~~v~FddV~VP~e~vl~~G~~~~g~~~~~~~~  279 (481)
T 2yyk_A          200 LQAGSEKYALAFALPTSTPGLHFVCREALVGGDSPFDHPLSSRVEEMDCLVIFDDVLVPWERVFILGNVELCNNAYGATG  279 (481)
T ss_dssp             CCTTCGGGCEEEEEETTCTTEEEEECCCCCCCSCTTTCTTTTTCCCCEEEEEEEEEEEEGGGEEEESCHHHHHHHHHHHT
T ss_pred             CCCCCCCeEEEEEEECCCCCEEEEeccccccCCccccccccccCCCCeEEEEEccEEECHHHccCCCCccHHHHHHHHhh
Confidence            322 23358899999999999994  23322        45554 6778899999999999998  5554444444  56


Q ss_pred             hhhHHHHHHHHHHHHHhhcc
Q 023057          267 GLDLERLVLAAGPLGIMQAP  286 (288)
Q Consensus       267 ~~~~~r~~~aa~~~G~a~~a  286 (288)
                      .+...|+..++..+|.++.+
T Consensus       280 ~l~~~r~~~~~~~~g~a~~~  299 (481)
T 2yyk_A          280 ALNHMAHQVVALKTAKTEAF  299 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHH
Confidence            67788888888766555543

>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia}

Probab=99.88  E-value=2.3e-22  Score=187.35  Aligned_cols=155  Identities=17%  Similarity=0.221  Sum_probs=118.1

Q ss_pred             cCC--HHHHHhhchhHhcCCeeEEEEecCCCC--------CCCCCCCeEEEEEeCCeEEEeeEeeeeeCCCCCCEEEEEE
Q 023057          130 HGS--PAQKDKYLPKLISGEHVGALAMSEPNA--------GSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYA  199 (288)
Q Consensus       130 ~g~--~~~~~~~l~~~~~g~~~~~~a~te~~~--------g~d~~~~~~~a~~~~~g~~l~G~k~~v~~~~~ad~~lv~a  199 (288)
                      +|+  .+|+++||+.+++|+.++++++|||+.        |||+ .+.+ .++++|||+|||+|.|+||+..||+++|++
T Consensus       127 ~~~~~~eq~~~~L~~l~~Ge~~~a~AltEP~~~rs~~~~~GSD~-~~~~-~~~~gdg~VlnG~K~~iT~a~~Ad~~lV~a  204 (515)
T 3hwc_A          127 EGRNLTQNIHNFLKLLREKDLNCPLNFVDPQTDRSSDAAQARSP-NLRI-VEKTDDGIIVNGVKAVGTGIAFGDYMHIGC  204 (515)
T ss_dssp             TTCCHHHHHHHHHHHHHHTTCCCCEECCCCCCCCCSCTTTSCCS-BCEE-EEECSSEEEEEEEEEEEESGGGCSEEEECC
T ss_pred             cCCCHHHHHHHHHHHHHcCCcEEEEEeeCCCCCcccccccCCCc-ceEE-EEEECCEEEEEEEEEEECCccccCEEEEEE
Confidence            554  578999999999999999999999986        4676 4443 345689999999999999999999999999


Q ss_pred             EeCC-CCCCCceEEEEEeCCCCCeEecccccccCC-----CC-----CceeeEEeceeeeCCCCcc--cCCCccHHHHHH
Q 023057          200 KTDI-KAGSKGITAFIIEKGMPGFSTAQKLDKLGM-----RG-----SDTCELVFENCFVPNENVL--GQEGKGVYVMMS  266 (288)
Q Consensus       200 ~~~~-~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl-----~~-----~~~~~v~~~~v~vp~~~~l--~~~~~~~~~~~~  266 (288)
                      ++++ .+++ .+++|+||.+.|||++...+...|.     +.     ..++.|.||||+||++++|  |..+.++..+..
T Consensus       205 ~t~~~~~~~-~~s~FlVp~d~pGv~v~~~~~~~G~~~~d~~ls~~~~~~~a~v~FddV~VP~e~vl~~Ge~g~g~~~~~~  283 (515)
T 3hwc_A          205 LYRPGIPGE-QVIFAAIPTNTPGVTVFCRESTVKNDPAEHPLASQGDELDSTTVFDNVFIPWEQVFHIGNPEHAKLYPQR  283 (515)
T ss_dssp             CCCTTCCGG-GCEEEEEETTCTTEEEEECCCCCCSCTTTCTTTTSCCCCEEEEEEEEEEEEGGGEEEESCTTGGGTHHHH
T ss_pred             EecCCCCCC-eEEEEEEECCCCCeEEeecccccCccccccccccccCCceEEEEECceEECHHHccCCCCccHHHHHHHH
Confidence            8732 2222 3889999999999998665665552     22     2378899999999999999  777777765522


Q ss_pred             hhhH-------HHHHHHHHHHHHhhccc
Q 023057          267 GLDL-------ERLVLAAGPLGIMQAPV  287 (288)
Q Consensus       267 ~~~~-------~r~~~aa~~~G~a~~al  287 (288)
                      .+..       .++..+..++|+++.++
T Consensus       284 ~~~~~~r~~~~~~~~~a~~~lG~A~~~~  311 (515)
T 3hwc_A          284 IFDWVHYHILIRQVLRAELIVGLAILIT  311 (515)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222       23455677788877654

>4g5e_A 2,4,6-trichlorophenol 4-monooxygenase; oxidoreductase; 2.50A {Cupriavidus necator JMP134}

Probab=99.69  E-value=1.7e-16  Score=148.11  Aligned_cols=152  Identities=13%  Similarity=0.050  Sum_probs=112.4

Q ss_pred             HHHHHhhchhHhcCCeeEEEEecCCCCCCCC-----CCCeE-EEEEeCCeEEEeeEeeeeeCCCCCCEEEEEEEeCCCCC
Q 023057          133 PAQKDKYLPKLISGEHVGALAMSEPNAGSDV-----VGMKC-KADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAG  206 (288)
Q Consensus       133 ~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~-----~~~~~-~a~~~~~g~~l~G~k~~v~~~~~ad~~lv~a~~~~~~~  206 (288)
                      .+...+|++.+.++++..+.++++|......     ..+.. ..++++|||+|||.|.|+||+..||+++|++++++..+
T Consensus       133 ~~n~~~y~~~~~~~DL~~~~a~~dPk~dRs~~~~~q~d~~l~Vve~~~dGiVVnGaK~~~T~a~~Ad~i~V~a~t~~~~~  212 (517)
T 4g5e_A          133 AKNIVDFVNFAKKHDLNCAPQFVDPQMDRSNPDAQQRSPGLRVIEKNDKGIVVSGVKAIGTGVAFADWIHIGVFFRPGIP  212 (517)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEECCCCCC-----------CBCEEEEECSSEEEEEEEEEEEESGGGCSEEEECCCCCTTCC
T ss_pred             HHHHHHHHHHHHhcCceeeeeeeCCCCCCCCCchhcCCCceEEEEEcCCeEEEeeEehhhcCccccCEEEEEeecCCCCC
Confidence            3567889999999999999999999743111     11112 34567899999999999999999999999998876545


Q ss_pred             CCceEEEEEeCCCCCeEecccccccCCCC---------C-ceeeEEeceeeeCCCCcc--cCCCccHHHHHHhhhHHHHH
Q 023057          207 SKGITAFIIEKGMPGFSTAQKLDKLGMRG---------S-DTCELVFENCFVPNENVL--GQEGKGVYVMMSGLDLERLV  274 (288)
Q Consensus       207 ~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~---------~-~~~~v~~~~v~vp~~~~l--~~~~~~~~~~~~~~~~~r~~  274 (288)
                      .+..++|+||.+.||+++.......+.+.         . ..+.|.||||+||+++++  |..+.+.......+...+..
T Consensus       213 ~d~~~~F~VP~dtPGv~~i~r~~~~~~~~~d~pl~~r~~e~da~vvFDdV~VP~e~Vf~~Ge~~~~~~~~~~~~~~~~~~  292 (517)
T 4g5e_A          213 GDQIIFAATPVNTPGVTIVCRESVVKEDPIEHPLASQGDELDGMTVFDNVFIPWSHVFHLGNPEHAKLYPQRVFDWLHYH  292 (517)
T ss_dssp             GGGCEEEEEETTCTTEEEEECCCCCCSCTTTCTTGGGCCCCEEEEEEEEEEEEGGGEEEESCTTHHHHHHHHHHHHHHHH
T ss_pred             ccceEEEEEecCCCCeEEEecccccCCCccccccccccCCcceEEEecceeccHHHccccCChhHHHHHHHHHHHHHHHH
Confidence            55678999999999999743333322221         1 236799999999999987  77777777777777777776


Q ss_pred             HHHHHHHHhh
Q 023057          275 LAAGPLGIMQ  284 (288)
Q Consensus       275 ~aa~~~G~a~  284 (288)
                      .++..+|.++
T Consensus       293 ~~~~~~~~~~  302 (517)
T 4g5e_A          293 ALIRQSVRAE  302 (517)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6666555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	288
d1ivha2	236	e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM	8e-74
d1jqia2	231	e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM do	1e-60
d1rx0a2	231	e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {H	1e-54
d2d29a2	233	e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus	4e-53
d1ukwa2	227	e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydroge	8e-53
d3mdea2	231	e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydroge	1e-52
d1buca2	232	e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM do	9e-49
d1siqa2	236	e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH	2e-44
d2ddha3	267	e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II,	8e-40
d1w07a3	271	e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domai	3e-39
d1r2ja2	210	e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygro	8e-31
d2c12a2	259	e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium ox	9e-31
d1u8va2	275	e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase	1e-30
d1ivha1	151	a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase,	2e-05
d2d29a1	153	a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Therm	8e-05
d1rx0a1	153	a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase	8e-05
d1buca1	151	a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-	9e-05
d3mdea1	154	a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydro	1e-04
d1ukwa1	152	a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydro	2e-04
d1jqia1	153	a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-	0.001
d1r2ja1	153	a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hy	0.001

>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]} Length = 236

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isovaleryl-coa dehydrogenase, NM domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  224 bits (571), Expect = 8e-74
 Identities = 148/228 (64%), Positives = 183/228 (80%), Gaps = 2/228 (0%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGL 91
             + Q Q ++++ +F +E++AP+A  ID+SN F      WK +GN  + GITAP +YGG 
Sbjct: 8   LSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGS 67

Query: 92  GLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
           GLGYL H + MEEISRASG+VGLSYGAHSNLCINQLVR+G+ AQK+KYLPKLISGE++GA
Sbjct: 68  GLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGA 127

Query: 152 LAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAG--SKG 209
           LAMSEPNAGSDVV MK KA++    YI+NGNK W TNGP A  L+VYAKTD+ A   S+G
Sbjct: 128 LAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAAVPASRG 187

Query: 210 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQE 257
           ITAFI+EKGMPGFST++KLDKLGMRGS+TCEL+FE+C +P  N+LG E
Sbjct: 188 ITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHE 235

>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 231

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  190 bits (483), Expect = 1e-60
 Identities = 82/231 (35%), Positives = 127/231 (54%), Gaps = 2/231 (0%)

Query: 28  TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQE 87
            S+   +T    +++   FA + + P AA +D+ + FP      K MG   L  +  P+E
Sbjct: 3   QSVELPETHQMLRQTCRDFAEKELVPIAAQLDKEHLFPTS--QVKKMGELGLLAMDVPEE 60

Query: 88  YGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE 147
             G GL YL + IA+EEISR   S G+    +++L +  +++ GS  QK +++    +G+
Sbjct: 61  LSGAGLDYLAYSIALEEISRGCASTGVIMSVNNSLYLGPILKFGSSQQKQQWITPFTNGD 120

Query: 148 HVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGS 207
            +G  A+SEP  GSD       A      +++NG K W TN   A   VV+A TD    +
Sbjct: 121 KIGCFALSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITNSWEASATVVFASTDRSRQN 180

Query: 208 KGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEG 258
           KGI+AF++    PG +  +K DKLG+R S T  L+FE+C +P EN+LG+ G
Sbjct: 181 KGISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPG 231

>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 231

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isobutyryl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  175 bits (443), Expect = 1e-54
 Identities = 65/229 (28%), Positives = 106/229 (46%), Gaps = 4/229 (1%)

Query: 29  SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEY 88
           S+  ++ Q +F++    FA   +AP  A  DQ   FP D  + +        G+    + 
Sbjct: 7   SMGLNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVD--VMRKAAQLGFGGVYIQTDV 64

Query: 89  GGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEH 148
           GG GL  L   +  E ++    S       H+  C   +   G+  Q+ K+ P L + E 
Sbjct: 65  GGSGLSRLDTSVIFEALATGCTSTTAYISIHNM-CAWMIDSFGNEEQRHKFCPPLCTMEK 123

Query: 149 VGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSK 208
             +  ++EP +GSD   +   A +    YI+NG+K + +    +   VV  +T    G K
Sbjct: 124 FASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGESDIYVVMCRTGGP-GPK 182

Query: 209 GITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQE 257
           GI+  ++EKG PG S  +K  K+G     T  ++FE+C VP  N +G E
Sbjct: 183 GISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSE 231

>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 233

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Acyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score =  171 bits (433), Expect = 4e-53
 Identities = 82/229 (35%), Positives = 129/229 (56%), Gaps = 6/229 (2%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGL 91
               + Q      +F +  +AP AA  D++ +FP D  L + +  F + G   P+ YGG 
Sbjct: 6   EGAEERQVLGPFREFLKAEVAPGAAERDRTGAFPWD--LVRKLAEFGVFGALVPEAYGGA 63

Query: 92  GLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
           GL        +E I+   G++ L+  +H++L    ++  GS AQK+ +LPKL SGE +GA
Sbjct: 64  GLSTRLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGA 123

Query: 152 LAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD----IKAGS 207
             ++EP +GSD   +K KA++V+GG+ +NG K + T G VA   VV A+TD     +   
Sbjct: 124 WGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSPERKH 183

Query: 208 KGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQ 256
           +GI+AF   +   G    +K +KLG+  SDT +L+ E+ FVP E +LG+
Sbjct: 184 QGISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGE 232

>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]} Length = 227

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Thermus thermophilus [TaxId: 274]

 Score =  170 bits (430), Expect = 8e-53
 Identities = 78/226 (34%), Positives = 117/226 (51%), Gaps = 3/226 (1%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGL 91
             + Q Q +    +FA+E I P A   D+    P    + + +    L     P+EYGG+
Sbjct: 5   LTEEQRQLQALARRFAKEVILPVAQEYDEKEEVPWP--VIEKLHEVGLLNAIIPEEYGGM 62

Query: 92  GLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
           GL  L   I  EE++ A   +     A     I  ++  G+  QK+++L  L     + A
Sbjct: 63  GLKMLDEVIVGEELAYACMGIYTIPMASDL-GITPVLLAGTEEQKERFLRPLTEKPALAA 121

Query: 152 LAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGIT 211
            A+SEP  GSD   +K +A R    Y++NG KMW +NG  A+ +VV+A  + +   KG+ 
Sbjct: 122 FALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGGEAEWVVVFATVNPELRHKGVV 181

Query: 212 AFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQE 257
           A ++E+G PGF   +   K+G R S T ELVFE+  VP EN LG+E
Sbjct: 182 ALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGEE 227

>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]} Length = 231

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  170 bits (430), Expect = 1e-52
 Identities = 81/229 (35%), Positives = 115/229 (50%), Gaps = 6/229 (2%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGL 91
             + Q +F+ +  +FARE I P AA  D++  +P    L K      L     P+ +GGL
Sbjct: 6   LTEQQKEFQATARKFAREEIIPVAAEYDRTGEYPVP--LLKRAWELGLMNTHIPESFGGL 63

Query: 92  GLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
           GLG +  C+  EE++     V  +  A++      L+  G+  Q+ KYL ++     + A
Sbjct: 64  GLGIIDSCLITEELAYGCTGVQTAIEANTL-GQVPLIIGGNYQQQKKYLGRMTEEPLMCA 122

Query: 152 LAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVY---AKTDIKAGSK 208
             ++EP AGSDV G+K KA++    YIING KMW TNG  A    +            SK
Sbjct: 123 YCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPASK 182

Query: 209 GITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQE 257
             T FI+E   PG    +K   +G R SDT  +VFE+  VP ENVL  E
Sbjct: 183 AFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTGE 231

>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]} Length = 232

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Megasphaera elsdenii [TaxId: 907]

 Score =  159 bits (403), Expect = 9e-49
 Identities = 82/230 (35%), Positives = 128/230 (55%), Gaps = 6/230 (2%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGL 91
             D Q  F +    F  + +AP     D    + ++  L   + +  + G    ++YGG 
Sbjct: 5   LTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDKE--LIDELLSLGITGAYFEEKYGGS 62

Query: 92  GLGYLYHCI---AMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEH 148
           G           A+EE+++    V ++  A  +LC N + + G+ AQK+K+L  L+ G  
Sbjct: 63  GDDGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTK 122

Query: 149 VGALAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGS 207
           +GA  ++EPNAG+D  G +  A +  DG Y +NG+K++ TNG  A   +V+A TD   G+
Sbjct: 123 LGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKSKGN 182

Query: 208 KGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQE 257
            GITAFI+E G PGF+  +K DK+G+  S T ELVF++  VP EN+LG+E
Sbjct: 183 HGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEE 232

>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Length = 236

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Glutaryl-CoA dehydrogenase GCDH
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  149 bits (375), Expect = 2e-44
 Identities = 57/230 (24%), Positives = 105/230 (45%), Gaps = 9/230 (3%)

Query: 31  LFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGG 90
                ++  +++   + +E + PR    +++  F +++     MG          + YG 
Sbjct: 13  QLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISE--MGELG-VLGPTIKGYGC 69

Query: 91  LGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVG 150
            G+  + + +   E+ R       +    S+L ++ +  +GS  Q+ KYLP+L  GE +G
Sbjct: 70  AGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLG 129

Query: 151 ALAMSEPNA--GSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSK 208
              ++EPN+      +  +   +  +  Y +NG K W TN P+A   VV+A+ +      
Sbjct: 130 CFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCEDG---- 185

Query: 209 GITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEG 258
            I  F++EKGM G S  +   K  +R S T  ++ +   VP ENVL    
Sbjct: 186 CIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGAS 235

>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 267

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Peroxisomal acyl-CoA oxidase-II, domains 1 and 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  137 bits (346), Expect = 8e-40
 Identities = 33/182 (18%), Positives = 64/182 (35%), Gaps = 19/182 (10%)

Query: 101 AMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAG 160
            M   +            H  + +  L+   +  Q++++     + E  G  A +E   G
Sbjct: 85  IMWFKNSVHRGHPEPLDLHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHG 144

Query: 161 SDVVGMKCKADR-------VDGGYIINGNKMWCTNGP-VAQTLVVYAKTDIKAGSKGITA 212
           + + G++  A         +     +   K W       +   +V A+   +    G+ A
Sbjct: 145 THLRGLETTATYDPKTQEFILNSPTVTSIKWWPGGLGKTSNHAIVLAQLITQGECYGLHA 204

Query: 213 FII-------EKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGK----GV 261
           F++        K +PG +      K G    D   L  +N  +P EN+L +  +    G 
Sbjct: 205 FVVPIREIGTHKPLPGITVGDIGPKFGYEEMDNGYLKMDNYRIPRENMLMKYAQVKPDGT 264

Query: 262 YV 263
           YV
Sbjct: 265 YV 266

>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 271

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Acyl-coenzyme A oxidase 1, domains 1 and 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  136 bits (343), Expect = 3e-39
 Identities = 37/176 (21%), Positives = 67/176 (38%), Gaps = 22/176 (12%)

Query: 111 SVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMK--C 168
                   H  + +  +   G+  Q+ K+L      + +G  A +E   GS+V G++   
Sbjct: 93  DQPAYVDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTA 152

Query: 169 KADRVDGGYIIN-----GNKMWCTNG-PVAQTLVVYAKTDIKAGSKGITAFIIE------ 216
             D     ++I+      +K W      V+   VVYA+        GI  FI++      
Sbjct: 153 TLDPKTDEFVIHTPTQTASKWWPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLED 212

Query: 217 -KGMPGFSTAQKLDKLG---MRGSDTCELVFENCFVPNENVLGQEGK----GVYVM 264
              +P  +      K+G       D   L+F++  +P + +L +  K    G YV 
Sbjct: 213 HSPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQMLMRLSKVTREGEYVP 268

>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Length = 210

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Protein FkbI
species: Streptomyces hygroscopicus [TaxId: 1912]

 Score =  112 bits (281), Expect = 8e-31
 Identities = 47/213 (22%), Positives = 79/213 (37%), Gaps = 8/213 (3%)

Query: 46  FARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEI 105
              + +  RAA  D S   P+D  L   +G   L       E+GGLGLG   +      +
Sbjct: 5   LLTDLVGDRAAEWDTSGELPRD--LLVRLGADGLLCAEVAAEHGGLGLGSRENGEFTAHV 62

Query: 106 SRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVG 165
                S+     +               A +     K ++   + A+  SE  AGSD+  
Sbjct: 63  GSLCSSLRSVMTSQGMAAWTVQ--RLGDAGQRATFLKELTSGKLAAVGFSERQAGSDLSA 120

Query: 166 MKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTA 225
           M+ +        +++G+K+W T    A  LVV+   +  +G+      ++    PG    
Sbjct: 121 MRTRVRLDGDTAVVDGHKVWTTAAAYADHLVVFGLQEDGSGAV----VVVPADTPGVRVE 176

Query: 226 QKLDKLGMRGSDTCELVFENCFVPNENVLGQEG 258
           +     G R +   +L  +   VP   VL   G
Sbjct: 177 RVPKPSGCRAAGHADLHLDQVRVPAGAVLAGSG 209

>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Length = 259

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Nitroalkane oxidase
species: Fusarium oxysporum [TaxId: 5507]

 Score =  113 bits (283), Expect = 9e-31
 Identities = 39/254 (15%), Positives = 84/254 (33%), Gaps = 30/254 (11%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAA----NIDQSNSFPQDVNLWKLMGNFNLHGITAPQE 87
              +QL+ +     FA   +   +A      DQ + F      ++      L     P  
Sbjct: 5   LSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIP 64

Query: 88  YGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE 147
            GG     ++  I +EE+     +  ++  A +   +  ++      Q+    P +    
Sbjct: 65  LGGTMESLVHESIILEELFAVEPATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEG 124

Query: 148 H-VGALAMSEPNAGSDVVG-----MKCKADRVDGGYIINGNKMWCTNGPVAQT-----LV 196
             + +L  SEPN  ++ +      ++  A +V   ++I+G K+W +N             
Sbjct: 125 EPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLAC 184

Query: 197 VYAKTD---------IKAGSKGITAFIIEKGMPGFSTAQ------KLDKLGMRGSDTCEL 241
           V  +               +  I   ++ +     +         + +  G   +     
Sbjct: 185 VVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHT 244

Query: 242 VFENCFVPNENVLG 255
            F    VP+EN+L 
Sbjct: 245 RFTEFHVPHENLLC 258

>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]} Length = 275

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains
species: Clostridium aminobutyricum [TaxId: 33953]

 Score =  113 bits (285), Expect = 1e-30
 Identities = 25/206 (12%), Positives = 60/206 (29%), Gaps = 29/206 (14%)

Query: 76  NFNLHGITAPQEYGG-LGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPA 134
           N   +   +  +    + +  L          R  G    ++ A  +       ++G+  
Sbjct: 70  NRFANLHQSTDDLRKKVKMQRLLGQKTASCFQRCVGMD--AFNAVFSTTYEIDQKYGTNY 127

Query: 135 QKD--KYLPKLISGEHVGALAMSEPNAGSDVVGMK--------CKADRVDGGYIINGNKM 184
            K+  +YL  +   + +   AM++P     +               ++ + G ++ G K 
Sbjct: 128 HKNFTEYLKYIQENDLIVDGAMTDPKGDRGLAPSAQKDPDLFLRIVEKREDGIVVRGAKA 187

Query: 185 WCTNGPVAQTLVVYAKTDIKAG-SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDT----- 238
             T    +   ++     +         +F       G            R  +      
Sbjct: 188 HQTGSINSHEHIIMPTIAMTEADKDYAVSFACPSDADGLFMIYGRQSCDTRKMEEGADID 247

Query: 239 ----------CELVFENCFVPNENVL 254
                       +VF+N F+PN+ + 
Sbjct: 248 LGNKQFGGQEALVVFDNVFIPNDRIF 273

>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 151

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Isovaleryl-CoA dehydrogenase, C-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 2e-05
 Identities = 24/27 (88%), Positives = 26/27 (96%)

Query: 259 KGVYVMMSGLDLERLVLAAGPLGIMQA 285
           KGVYV+MSGLDLERLVLA GPLG+MQA
Sbjct: 1   KGVYVLMSGLDLERLVLAGGPLGLMQA 27

>d2d29a1 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 153

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Acyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 39.9 bits (92), Expect = 8e-05
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 258 GKGVYVMMSGLDLERLVLAAGPLGIMQA 285
           GKG Y ++  LD  R+ +AA  +G+ QA
Sbjct: 1   GKGFYDVLRVLDGGRIGIAAMAVGLGQA 28

>d1rx0a1 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 153

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Isobutyryl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 8e-05
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 258 GKGVYVMMSGLDLERLVLAAGPLGIMQA 285
           G+G  + + GL+  R+ +A+  LG   A
Sbjct: 1   GQGFLIAVRGLNGGRINIASCSLGAAHA 28

>d1buca1 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-domain {Megasphaera elsdenii [TaxId: 907]} Length = 151

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Butyryl-CoA dehydrogenase, C-domain
species: Megasphaera elsdenii [TaxId: 907]

 Score = 39.9 bits (92), Expect = 9e-05
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 258 GKGVYVMMSGLDLERLVLAAGPLGIMQA 285
           GKG  + M  LD  R+ +AA  LGI +A
Sbjct: 1   GKGFKIAMMTLDGGRIGVAAQALGIAEA 28

>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase, C-domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 154

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Medium chain acyl-CoA dehydrogenase, C-domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 258 GKGVYVMMSGLDLERLVLAAGPLGIMQA 285
           G G  + M   D  R  +AAG +G+ Q 
Sbjct: 1   GAGFKIAMGTFDKTRPPVAAGAVGLAQR 28

>d1ukwa1 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydrogenase, C-domain {Thermus thermophilus [TaxId: 274]} Length = 152

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Medium chain acyl-CoA dehydrogenase, C-domain
species: Thermus thermophilus [TaxId: 274]

 Score = 38.3 bits (88), Expect = 2e-04
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 258 GKGVYVMMSGLDLERLVLAAGPLGIMQA 285
           G+G  + M  L+  R+ +AAG +G+ + 
Sbjct: 1   GEGFKIAMQTLNKTRIPVAAGSVGVARR 28

>d1jqia1 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 153

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Butyryl-CoA dehydrogenase, C-domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 260 GVYVMMSGLDLERLVLAAGPLGIMQA 285
           G  + M  LD+ R+ +A+  LGI QA
Sbjct: 2   GFKIAMQTLDMGRIGIASQALGIAQA 27

>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Length = 153

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Protein FkbI
species: Streptomyces hygroscopicus [TaxId: 1912]

 Score = 36.2 bits (82), Expect = 0.001
 Identities = 7/24 (29%), Positives = 14/24 (58%)

Query: 262 YVMMSGLDLERLVLAAGPLGIMQA 285
            ++ + L   R  +A G +GI++A
Sbjct: 4   MLVAASLAYGRKSVAWGCVGILRA 27

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	288
d1jqia2	231	Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus	100.0
d1ukwa2	227	Medium chain acyl-CoA dehydrogenase, NM domains {T	100.0
d2d29a2	233	Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI	100.0
d3mdea2	231	Medium chain acyl-CoA dehydrogenase, NM domains {P	100.0
d1ivha2	236	Isovaleryl-coa dehydrogenase, NM domains {Human (H	100.0
d1rx0a2	231	Isobutyryl-CoA dehydrogenase {Human (Homo sapiens)	100.0
d1siqa2	236	Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie	100.0
d1buca2	232	Butyryl-CoA dehydrogenase, NM domains {Megasphaera	100.0
d1r2ja2	210	Protein FkbI {Streptomyces hygroscopicus [TaxId: 1	100.0
d2c12a2	259	Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55	100.0
d2ddha3	267	Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {	99.97
d1w07a3	271	Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale	99.96
d1u8va2	275	4-hydroxybutyryl-CoA dehydratase AbfD, NM domains	99.83

>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2e-48  Score=328.90  Aligned_cols=229  Identities=36%  Similarity=0.651  Sum_probs=216.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHH
Q 023057           27 STSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEIS  106 (288)
Q Consensus        27 ~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~  106 (288)
                      |+.+||++|+ +|++++|+|+++++.|.+.++|+.+.+|.  +.|++|++.||+++.+|++|||.|+++.+.+.+.|+++
T Consensus         3 ~~~~L~ee~~-~l~~~~r~f~~~~i~p~a~~~d~~~~~p~--e~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~~~ee~~   79 (231)
T d1jqia2           3 QSVELPETHQ-MLRQTCRDFAEKELVPIAAQLDKEHLFPT--SQVKKMGELGLLAMDVPEELSGAGLDYLAYSIALEEIS   79 (231)
T ss_dssp             CCSCCCHHHH-HHHHHHHHHHHHHTTTTHHHHHHHTCCCH--HHHHHHHHHTTTSSSSCGGGTCCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHH-HHHHHHHHHHHHhChHHHHHHHhcCCCCH--HHHHHHHHhCCcccccccccCCCchhHHHHHHHHHHHH
Confidence            5678999999 99999999999999999999999999999  99999999999999999999999999999999999999


Q ss_pred             hhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeeee
Q 023057          107 RASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWC  186 (288)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v  186 (288)
                      +.+.+.++....|...+...+..+|+++||++||+++++|+.++|+++|||++|+|...+.|+|++++|+|+|||+|.||
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~~~~~~lnG~K~~v  159 (231)
T d1jqia2          80 RGCASTGVIMSVNNSLYLGPILKFGSSQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAASTTAREEGDSWVLNGTKAWI  159 (231)
T ss_dssp             HHCHHHHHHHHHHHHTTHHHHHHHCCHHHHHHHTGGGSSSSCCEEEECCBTTBSSSTTCCCCEEEECSSEEEEEEEEEEE
T ss_pred             hhccccccceeeeccchhhhhhhcCCHHHHHHHhCcccCCCccccceeccCCCCccCcccceEEEEECCEEEEeeeeeeE
Confidence            99988888777776567888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCC
Q 023057          187 TNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEG  258 (288)
Q Consensus       187 ~~~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~  258 (288)
                      +++..+|++++.++.+.+.+..++.+|+||++.|||++.+.|+++|++++++++|+|+||+||++++||.+|
T Consensus       160 t~~~~a~~~~v~a~~~~~~~~~g~~~~~Vp~~~~Gv~i~~~~~~~G~r~~~~~~v~fd~v~Vp~~~~lG~~G  231 (231)
T d1jqia2         160 TNSWEASATVVFASTDRSRQNKGISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPG  231 (231)
T ss_dssp             ETTTTCSEEEEEEESCGGGGGGSEEEEEEESSCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTT
T ss_pred             eecccccccccccccccccccCCceEEEEeCCCCCeEECCccCccccCCCceEEEEEeeEEEcHHHCCCCCC
Confidence            999999999999998765555678999999999999999999999999999999999999999999998764

>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.2e-48  Score=327.70  Aligned_cols=226  Identities=35%  Similarity=0.544  Sum_probs=214.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHH
Q 023057           27 STSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEIS  106 (288)
Q Consensus        27 ~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~  106 (288)
                      |++.||++|+ ++++++|+|+++++.|.+.++|+.+.+|+  ++|++|+++||+++.+|+++||.|.++.+.+.+.|+++
T Consensus         1 Mdf~Lteeq~-~l~~~~r~f~~~~~~p~a~~~d~~~~~p~--~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v~e~~~   77 (227)
T d1ukwa2           1 IDFSLTEEQR-QLQALARRFAKEVILPVAQEYDEKEEVPW--PVIEKLHEVGLLNAIIPEEYGGMGLKMLDEVIVGEELA   77 (227)
T ss_dssp             CBCCCCHHHH-HHHHHHHHHHHHTTGGGHHHHHHHTCCCH--HHHHHHHHTTCTTTTSCGGGTSCCCCHHHHHHHHHHHH
T ss_pred             CcCCCCHHHH-HHHHHHHHHHHHhChHHHHHHHhcCCCCH--HHHHHHHhhhhhhhccccccCcccccccccccchhhhc
Confidence            6789999999 99999999999999999999999999999  99999999999999999999999999999999999999


Q ss_pred             hhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeeee
Q 023057          107 RASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWC  186 (288)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v  186 (288)
                      +++.++++....+. .+...+..+++++||++||+.+.+|+.++|+++|||++|+|...++|+|++++|||+|||+|.||
T Consensus        78 ~~~~~~~~~~~~~~-~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~v  156 (227)
T d1ukwa2          78 YACMGIYTIPMASD-LGITPVLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWI  156 (227)
T ss_dssp             HHCHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHGGGTSSSCEEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEE
T ss_pred             cccccccccccccc-cchhhhhccCCHHHHHHhccccccccccccccccCCCcCcCCcCceEEEEEECCEEEEEeEEecc
Confidence            99998887776665 66778889999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccC
Q 023057          187 TNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQ  256 (288)
Q Consensus       187 ~~~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~  256 (288)
                      ||+..||+++|.++++++.+..++++|+||++.|||++.+.|+++|++++++++|+|+||+||++++||+
T Consensus       157 s~~~~Ad~~~v~a~~~~~~~~~g~~~f~V~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~llGe  226 (227)
T d1ukwa2         157 SNGGEAEWVVVFATVNPELRHKGVVALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGE  226 (227)
T ss_dssp             ETTTTEEEEEEEEESCGGGGGGGEEEEEEETTCTTEEEEECCCCSSCTTSCEEEEEEEEEEEEGGGEESC
T ss_pred             CccccchhhccccccCCccCcCCcEEEEEeCCCCceEeccccCcccCCCCceEEEEEeeEEEcHHHccCC
Confidence            9999999999999987655556799999999999999999999999999999999999999999999985

>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Acyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=5e-48  Score=326.85  Aligned_cols=227  Identities=36%  Similarity=0.612  Sum_probs=215.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHH
Q 023057           27 STSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEIS  106 (288)
Q Consensus        27 ~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~  106 (288)
                      |.++||+||+ ++++++|+|+++++.|.+.++|+++.+|+  ++|++|++.||+++.+|+++||.+.++.+.+.+.++++
T Consensus         2 ~~F~l~~e~~-~l~~~~r~f~~~~i~p~a~e~d~~~~~p~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~~~~~   78 (233)
T d2d29a2           2 LWFEEGAEER-QVLGPFREFLKAEVAPGAAERDRTGAFPW--DLVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEAIA   78 (233)
T ss_dssp             CTTSCCHHHH-HHHHHHHHHHHHHTGGGHHHHHHHCCCCH--HHHHHHHTTTGGGSSSCGGGTCCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHH-HHHHHHHHHHHHhCcccHHHHHHhCCCCH--HHHHHHHHhccccccccccccccccchhhhcccccccc
Confidence            6789999999 99999999999999999999999999999  99999999999999999999999999999999999999


Q ss_pred             hhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeeee
Q 023057          107 RASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWC  186 (288)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v  186 (288)
                      +.++++++.+.+|...+...+..+|+++|+++|||++.+|+.++|+++|||++|+|...++|+|++++|+|+|||+|+|+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~~~~~lnG~K~~v  158 (233)
T d2d29a2          79 YYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFI  158 (233)
T ss_dssp             HHCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTSSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEE
T ss_pred             ccccccccccccccccchHHHHHhChHHHHHhhCccccCCCEEEEEEecCCCCCCcccceeEEEEEECCEEEEecceecc
Confidence            99999998888886567778999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCEEEEEEEeCCCCC----CCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccC
Q 023057          187 TNGPVAQTLVVYAKTDIKAG----SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQ  256 (288)
Q Consensus       187 ~~~~~ad~~lv~a~~~~~~~----~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~  256 (288)
                      +++..||+++|.+++.++++    ..++++|+||++.|||++.+.|+++|++++++++|+|+||+||++++||+
T Consensus       159 s~~~~a~~~~v~a~~~~~~~~~~~~~g~~~~lv~~~~~Gv~i~~~~~~~G~r~~~~~~v~f~~v~VP~~~llGe  232 (233)
T d2d29a2         159 TQGSVAGVYVVMARTDPPPSPERKHQGISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGE  232 (233)
T ss_dssp             ETTTTCSEEEEEEECSCCSCGGGTTTTEEEEEEECCSSSEEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESS
T ss_pred             ccccccccccccccccCCccccccccCceEEEEEcCCCCcEECCcccccccCCCCeEEEEEeeEEECHHHcCcC
Confidence            99999999999999865432    34689999999999999999999999999999999999999999999985

>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=1.1e-47  Score=323.89  Aligned_cols=226  Identities=37%  Similarity=0.577  Sum_probs=212.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHH
Q 023057           27 STSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEIS  106 (288)
Q Consensus        27 ~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~  106 (288)
                      |++.+|++|+ ++++++|+|+++++.|.+.++|+++.+|+  ++|+++++.||+++.+|+++||.|.+....+.+.|+++
T Consensus         2 mdf~lseeq~-~l~~~~r~f~~~~~~p~a~~~d~~~~~p~--~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~l~   78 (231)
T d3mdea2           2 FSFELTEQQK-EFQATARKFAREEIIPVAAEYDRTGEYPV--PLLKRAWELGLMNTHIPESFGGLGLGIIDSCLITEELA   78 (231)
T ss_dssp             CCCCCCHHHH-HHHHHHHHHHHHTTHHHHHHHHHHCCCCH--HHHHHHHHHTCSSTTSCGGGTCCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHH-HHHHHHHHHHHHhCchhHHHHHHcCCCCH--HHHHHHHHhhhccccccccccCccccccccccchhhhc
Confidence            7899999999 99999999999999999999999999999  99999999999999999999999999999999999999


Q ss_pred             hhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeeee
Q 023057          107 RASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWC  186 (288)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v  186 (288)
                      +++.++++....|. .+...+..+++++|+++|++++++|+.++|+++|||++|||...++|+|++++|||+|||+|+||
T Consensus        79 ~~~~~~~~~~~~~~-~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~lnG~K~~v  157 (231)
T d3mdea2          79 YGCTGVQTAIEANT-LGQVPLIIGGNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWI  157 (231)
T ss_dssp             HHCHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHTTSCCEEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEE
T ss_pred             cccccccccccccc-ccchhhhhcCcccccccccchhcCCceEEEEEecCCCCCCCccCCEEEEEEECCEEEEEEEEEEe
Confidence            99999988877766 67778889999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCEEEEEEEeCCCCC---CCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccC
Q 023057          187 TNGPVAQTLVVYAKTDIKAG---SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQ  256 (288)
Q Consensus       187 ~~~~~ad~~lv~a~~~~~~~---~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~  256 (288)
                      ||+..+|++++.++++.++.   ..++++|+||++.|||++.+.|+++|++++++++|+|+||+||++++||.
T Consensus       158 t~~~~a~~~~~~a~t~~~~~~~~~~~~~~~lv~~d~~Gv~v~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~lG~  230 (231)
T d3mdea2         158 TNGGKANWYFLLARSDPDPKAPASKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTG  230 (231)
T ss_dssp             ETTTTEEEEEEEEECCCCTTSCHHHHEEEEEEETTSTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGBSSC
T ss_pred             CCchhccccceecccccccccccccceEEEEEeCCCCCeEEccCcccccCCCCCeEEEEEeeEEEcHHhEecC
Confidence            99999999999999865432   23688999999999999999999999999999999999999999999984

>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isovaleryl-coa dehydrogenase, NM domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.8e-47  Score=320.44  Aligned_cols=227  Identities=65%  Similarity=1.093  Sum_probs=212.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhC
Q 023057           30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRAS  109 (288)
Q Consensus        30 ~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~~~~  109 (288)
                      .||+||+ +|++++++|+++++.|.+.++|+.+.+|..+++|+++.++||+++.+|+++||.|.++.+.+.++|++++++
T Consensus         7 ~Lseeq~-~l~d~~~~f~~~~~~p~~~~~d~~~~~~~~~e~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~   85 (236)
T d1ivha2           7 GLSEEQR-QLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRAS   85 (236)
T ss_dssp             TCCHHHH-HHHHHHHHHHHHHTTTTHHHHHHHTCCTTHHHHHHHHHHHTCTTTTSCGGGTCCCCCHHHHHHHHHHHHHHC
T ss_pred             CCCHHHH-HHHHHHHHHHHHhCChhHHHHHhhCCCccHHHHHHHHHHhhhccccccccccccCcccchhhhhhhhhhhhh
Confidence            5999999 999999999999999999899999998865589999999999999999999999999999999999999999


Q ss_pred             CchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeeeeeCC
Q 023057          110 GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNG  189 (288)
Q Consensus       110 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v~~~  189 (288)
                      +++++.+.+|...+...|.++|+++||++||+++++|+.++|+++|||.+|+|...++|+|++++|||+|||+|+|||++
T Consensus        86 ~~~~~~~~~~~~~~~~~l~~~gs~~qk~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~vs~~  165 (236)
T d1ivha2          86 GAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNG  165 (236)
T ss_dssp             HHHHHHHHHHHTTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECSSEEEEEEEEEEEETG
T ss_pred             hccceeeeehhhhhHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCccccCeEEEEEECCEEEEEEEEEEEeCC
Confidence            99999888876567788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEEEeCCCC--CCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCC
Q 023057          190 PVAQTLVVYAKTDIKA--GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQE  257 (288)
Q Consensus       190 ~~ad~~lv~a~~~~~~--~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~  257 (288)
                      ..||+++|.|+++..+  ..+++++|+||++.||+++.+.|+++|++++++++|+|+||+||.+++||.+
T Consensus       166 ~~a~~~~v~a~~~~~~~~~~~g~~~flV~~~~~Gv~i~~~~~~~G~~~~~~~~v~fd~v~Vp~~~llGee  235 (236)
T d1ivha2         166 PDADVLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHE  235 (236)
T ss_dssp             GGCSEEEEEEESCTTCSSGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESCT
T ss_pred             ccccccccccccccccccccCccEEEEEeCCCCceEeCCCcCcccCCCCceEEEEEeeEEEcHHHcCCCC
Confidence            9999999999975432  2457899999999999999999999999999999999999999999999875

>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isobutyryl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.8e-46  Score=313.28  Aligned_cols=228  Identities=28%  Similarity=0.505  Sum_probs=214.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHH
Q 023057           25 FSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEE  104 (288)
Q Consensus        25 ~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~  104 (288)
                      ..+++.|++||+ +|++++|+|+++++.|.+.++|+++.+|+  ++|++++++||+++.+|+++||.|.+..+.+.+.++
T Consensus         4 ~~~~~~Lt~e~~-~l~~~~r~F~~~~i~p~a~~~d~~~~~p~--~~~~~l~~~Gl~~~~vp~~~GG~g~~~~~~~~~~e~   80 (231)
T d1rx0a2           4 IDPSMGLNEEQK-EFQKVAFDFAAREMAPNMAEWDQKELFPV--DVMRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFEA   80 (231)
T ss_dssp             TCTTTTCCHHHH-HHHHHHHHHHHHHTHHHHHHHHHHTCCCH--HHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHHH
T ss_pred             cCCCCCCCHHHH-HHHHHHHHHHHHhCchhHHHHHhcCCCCH--HHHHHHHHcCCcccccchhhccccccchhhhhhHHH
Confidence            345667999999 99999999999999999999999999999  999999999999999999999999999999999999


Q ss_pred             HHhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEee
Q 023057          105 ISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKM  184 (288)
Q Consensus       105 l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~  184 (288)
                      +++++.++++.+..|. .++..+..+++++|+++|++++.+|+..+++++|||+.|+|...++|+|++++|||+|||+|+
T Consensus        81 l~~~~~~~~~~~~~~~-~~~~~l~~~~~~e~~~~~l~~~~~g~~~~~~~~te~~~gsd~~~~~t~a~~~~~g~~LnG~K~  159 (231)
T d1rx0a2          81 LATGCTSTTAYISIHN-MCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKA  159 (231)
T ss_dssp             HHTTCHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEE
T ss_pred             Hhhhcccccccccccc-chhhhhhhhcchhhhhhhcchhhcccccccccccccccCCCCCCceEEEEEECCEEEEEeEEc
Confidence            9999999998888876 677889999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeCCCCCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCC
Q 023057          185 WCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQE  257 (288)
Q Consensus       185 ~v~~~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~  257 (288)
                      ||||+..||+++|.++.+++ +.+++++|+||++.|||++.+.|+++|++++++++|+|+||+||++++||++
T Consensus       160 ~vs~~~~Ad~~~v~a~~~~~-~~~~~~~~lv~~d~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~llG~E  231 (231)
T d1rx0a2         160 FISGAGESDIYVVMCRTGGP-GPKGISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSE  231 (231)
T ss_dssp             EEETTTTCSEEEEEEESSSS-SGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESST
T ss_pred             cccCCCcCCEEEEEEeecCC-CCCceEEEEEeCCCCceEecCccCccccCCCceEEEEEccEEEcHHHEeCCC
Confidence            99999999999999997653 4457899999999999999999999999999999999999999999999853

>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Glutaryl-CoA dehydrogenase GCDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-46  Score=314.42  Aligned_cols=231  Identities=29%  Similarity=0.514  Sum_probs=213.3

Q ss_pred             cccccCCCCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHH
Q 023057           20 KHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHC   99 (288)
Q Consensus        20 ~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~   99 (288)
                      +++.++.|++.||+||. ++++++|+|+++++.|.+.++|+++.+|.  +.|+++.+.||+++.+ +++||.|.+..+.+
T Consensus         3 ~~~d~~~~d~~Lteeq~-~l~d~~r~f~~~~i~p~~~~~d~~~~~p~--~~~~~~~~~g~~~~~i-~~~gg~g~~~~~~~   78 (236)
T d1siqa2           3 DWQDPLVLEEQLTTDEI-LIRDTFRTYCQERLMPRILLANRNEVFHR--EIISEMGELGVLGPTI-KGYGCAGVSSVAYG   78 (236)
T ss_dssp             CTTSTTCGGGGSCHHHH-HHHHHHHHHHHHHTHHHHHHHHHHTCCCT--HHHHHHHHTTCSSTTC-EETTEECCCHHHHH
T ss_pred             CCCCcccccccCCHHHH-HHHHHHHHHHHhhCChhHHHHHhcCCCCH--HHHHHhhhhhcccccc-cccccCCcCHHHHH
Confidence            35577889999999999 99999999999999999999999999999  9999999999999988 56899999999999


Q ss_pred             HHHHHHHhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEE--EEeCCeE
Q 023057          100 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA--DRVDGGY  177 (288)
Q Consensus       100 ~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a--~~~~~g~  177 (288)
                      .+++++++.+.+.+..+..+..++...+..+|+++||++|||++++|+.++|+++|||.+|+|.....|++  ++.+|+|
T Consensus        79 ~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~~~~~~  158 (236)
T d1siqa2          79 LLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSY  158 (236)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEE
T ss_pred             HHHHhhhccccccccccccccccchhhhhhhcCHHHHHHhcCccCCCCEEecccCcCCCcccccccccccccccccccce
Confidence            99999999998888777777656788899999999999999999999999999999999999999888776  6778889


Q ss_pred             EEeeEeeeeeCCCCCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCC
Q 023057          178 IINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQE  257 (288)
Q Consensus       178 ~l~G~k~~v~~~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~  257 (288)
                      +|||+|.||+|+..||+++|+|++++    .++++|+||++.|||++.+.++++|++++++++|+|+||+||++++||..
T Consensus       159 vlnG~K~~vt~a~~Ad~~~V~art~~----~~~~~flV~~~~~Gv~v~~~~~~~g~r~~~~~~l~fd~V~VP~~~llGg~  234 (236)
T d1siqa2         159 TLNGTKTWITNSPMADLFVVWARCED----GCIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGA  234 (236)
T ss_dssp             EEEEEEEEEETGGGCSEEEEEEEETT----SCEEEEEEETTCTTEECCBCCCCSSSTTSCEEEEEEEEEEEEGGGBCTTC
T ss_pred             EeccccccEecCCCceEEEEEecccC----CcceEEeecCCCCCeEeCCcccccccccCceEEEEEeeEEECHHHCcCCC
Confidence            99999999999999999999999875    36889999999999999998999999999999999999999999999854


Q ss_pred             C
Q 023057          258 G  258 (288)
Q Consensus       258 ~  258 (288)
                      +
T Consensus       235 ~  235 (236)
T d1siqa2         235 S  235 (236)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Megasphaera elsdenii [TaxId: 907]

Probab=100.00  E-value=6e-44  Score=301.34  Aligned_cols=228  Identities=37%  Similarity=0.631  Sum_probs=209.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCC---CCCHHHHHHHHH
Q 023057           27 STSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGL---GLGYLYHCIAME  103 (288)
Q Consensus        27 ~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~---g~~~~~~~~v~e  103 (288)
                      |++.+|++|+ ++++++|+|+++++.|.+.++|+.+.+|+  ++|++++++||+++.+|++|||.   +........+.+
T Consensus         1 Mdf~lt~~~~-~l~~~~r~f~~~~l~p~~~e~D~~~~~p~--e~~~~l~~~G~~~~~vP~~~Gg~~~~~~~~~~~~~~~~   77 (232)
T d1buca2           1 MDFNLTDIQQ-DFLKLAHDFGEKKLAPTVTERDHKGIYDK--ELIDELLSLGITGAYFEEKYGGSGDDGGDVLSYILAVE   77 (232)
T ss_dssp             CBCCCCHHHH-HHHHHHHHHHHHTTTTTHHHHHHHTCCCH--HHHHHHHTTSGGGTTSCGGGTCGGGGTCCHHHHHHHHH
T ss_pred             CcCCCCHHHH-HHHHHHHHHHHHhCchhHHHHHhcCCCCH--HHHHHHHhhhcccccccccccccccccccchheehhhh
Confidence            7889999999 99999999999999999999999999999  99999999999999999999954   567888888888


Q ss_pred             HHHhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCe-EEEeeE
Q 023057          104 EISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG-YIINGN  182 (288)
Q Consensus       104 ~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g-~~l~G~  182 (288)
                      ..+............+..++...+..+++++|+++|++++.+|+.++++++|||.+|+|...+.|++++++|| |+|||+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~k~~~~~~~~~G~~~~~~a~te~~~gs~~~~~~t~a~~~~dg~~~lnG~  157 (232)
T d1buca2          78 ELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGS  157 (232)
T ss_dssp             HHHHHCHHHHHHHHHHHHHTHHHHHHHCCHHHHHHTHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEECTTSCEEEEEE
T ss_pred             hhhhccccccccccchhhhhhhHHHHhhhhhhhhhhhhhhhCCCEEecccccccccccccccceEEEEEcCCCEEEEEEE
Confidence            8888776665555555446678899999999999999999999999999999999999999999999999886 999999


Q ss_pred             eeeeeCCCCCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCC
Q 023057          183 KMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQE  257 (288)
Q Consensus       183 k~~v~~~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~  257 (288)
                      |+||||+..||+++|.++++++.+..++++|+||++.|||++.+.|+++|+|++++++|+|+||+||++++||++
T Consensus       158 K~~vt~a~~ad~~~v~a~~~~~~~~~g~~~~lv~~~~~Gv~i~~~~~~~G~r~~~~~~l~f~~v~vp~~~llGee  232 (232)
T d1buca2         158 KIFITNGGAADIYIVFAMTDKSKGNHGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEE  232 (232)
T ss_dssp             EEEEETTTTCSEEEEEEESCSSSSTTSEEEEEEETTCTTEEEEEECCCSSCTTSCEEEEEEEEEEECGGGEESCT
T ss_pred             EeeecccccceEEEEEEEecCCCCCceeEEEEEeCCCCceEeCCccCcccCCCCceEEEEEeeEEEcHHHccCCC
Confidence            999999999999999999887766778999999999999999999999999999999999999999999999863

>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Protein FkbI
species: Streptomyces hygroscopicus [TaxId: 1912]

Probab=100.00  E-value=7.6e-44  Score=296.31  Aligned_cols=206  Identities=24%  Similarity=0.381  Sum_probs=192.3

Q ss_pred             HHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhCCchhhHHHhhhhHHH
Q 023057           45 QFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCI  124 (288)
Q Consensus        45 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~  124 (288)
                      .|+.+.+.+.+.++|+++.+|+  ++|+++++.||+++.+|++|||.|+++.+.+.++|+++++|+++++.+..|. .+.
T Consensus         4 a~~~~~i~~~Aae~d~~~~~p~--~~~~~l~~~Gl~~~~iP~e~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~-~~~   80 (210)
T d1r2ja2           4 ALLTDLVGDRAAEWDTSGELPR--DLLVRLGADGLLCAEVAAEHGGLGLGSRENGEFTAHVGSLCSSLRSVMTSQG-MAA   80 (210)
T ss_dssp             HHHHHHHSSCHHHHHHHTCCCH--HHHHHHHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHH-HHH
T ss_pred             HHHHhhhhHhHHHHHHhCCCCH--HHHHHHHHcCCCcccCChhHccccccHHHHhhhhcccccccccccccccccc-ccc
Confidence            4567788999999999999999  9999999999999999999999999999999999999999999998888887 677


Q ss_pred             HHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeeeeeCCCCCCEEEEEEEeCCC
Q 023057          125 NQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK  204 (288)
Q Consensus       125 ~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v~~~~~ad~~lv~a~~~~~  204 (288)
                      ..+..+|+++||++||+.+.+|.. .+++++||..|+|...++|++++++|+|+|||+|.||+++..||+++|.++.+++
T Consensus        81 ~~l~~~gs~~qk~~~l~~~~~g~~-~~~~~te~~~gs~~~~~~t~a~~~~~g~~l~G~K~~vs~a~~Ad~~~v~a~~~~~  159 (210)
T d1r2ja2          81 WTVQRLGDAGQRATFLKELTSGKL-AAVGFSERQAGSDLSAMRTRVRLDGDTAVVDGHKVWTTAAAYADHLVVFGLQEDG  159 (210)
T ss_dssp             HHHHHHSCHHHHHHHHHHTTCC-C-EEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEETTTTTCSEEEEEEBCSSS
T ss_pred             hhhhhccccccccccccccccccc-ccccccccccccccccccceEEEeccceEEEEeecccccccccccccceeeecCC
Confidence            889999999999999999999974 6899999999999999999999999999999999999999999999999997653


Q ss_pred             CCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCC
Q 023057          205 AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEG  258 (288)
Q Consensus       205 ~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~  258 (288)
                          ..++|+||++.||+++.+.|+++|+++++++.|+|+||+||++++||.++
T Consensus       160 ----~~~~~lv~~~~~Gv~v~~~~~~~G~r~~~~~~v~f~~v~VP~~~~lG~~G  209 (210)
T d1r2ja2         160 ----SGAVVVVPADTPGVRVERVPKPSGCRAAGHADLHLDQVRVPAGAVLAGSG  209 (210)
T ss_dssp             ----CCEEEEEETTSTTEEEEECSSCSSSTTSCCEEEEEEEEEEEGGGBCTTTT
T ss_pred             ----CceEEeecCCCCCeEeccCCCcccCCCCCeEEEEEeeEEECHHHCcCCCC
Confidence                56799999999999999999999999999999999999999999999875

>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Nitroalkane oxidase
species: Fusarium oxysporum [TaxId: 5507]

Probab=100.00  E-value=1.2e-43  Score=304.24  Aligned_cols=225  Identities=20%  Similarity=0.311  Sum_probs=197.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHhhcCccccccc----ccCCC--CCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHH
Q 023057           27 STSLLFDDTQLQFKESVGQFARENIAPRAANID----QSNSF--PQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCI  100 (288)
Q Consensus        27 ~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d----~~~~~--~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~  100 (288)
                      |++.++++|. ++++++|+|+++++.|...+++    +.+.+  ++  ++|++++++||+++.+|++|||.|.++.+.+.
T Consensus         1 mdf~lt~eq~-~l~~~~r~f~~~~~~p~~~~~~~~~d~~~~~~~~~--e~~~~~~~~G~~~~~vPee~GG~g~~~~~~~~   77 (259)
T d2c12a2           1 VDFKLSPSQL-EARRHAQAFANTVLTKASAEYSTQKDQLSRFQATR--PFYREAVRHGLIKAQVPIPLGGTMESLVHESI   77 (259)
T ss_dssp             CBCCCCHHHH-HHHHHHHHHHHHTGGGHHHHHTTCSSHHHHHHTTH--HHHHHHHHTTTTGGGSBGGGTCCBCCHHHHHH
T ss_pred             CCCCCCHHHH-HHHHHHHHHHHHhCCcchHHHhhhccccccccchH--HHHHHHHHcCCCCcCCChHHhhccchhhhhhh
Confidence            7889999999 9999999999999988754443    33333  55  89999999999999999999999999999999


Q ss_pred             HHHHHHhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhc--CCeeEEEEecCCCCCCCCC-----CCeEEEEEe
Q 023057          101 AMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLIS--GEHVGALAMSEPNAGSDVV-----GMKCKADRV  173 (288)
Q Consensus       101 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~--g~~~~~~a~te~~~g~d~~-----~~~~~a~~~  173 (288)
                      ++|+++++++++++.+..|. ++...+..+|+++|+++||+++++  |+.++|+++|||++|||..     .++|+|+++
T Consensus        78 ~~eel~~~~~~~~~~~~~~~-~~~~~i~~~g~~eq~~~~l~~~~~~~g~~~~a~a~TEp~~Gsd~~~~~~~~~~t~a~~~  156 (259)
T d2c12a2          78 ILEELFAVEPATSITIVATA-LGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKV  156 (259)
T ss_dssp             HHHHHHTTCCTTHHHHHHHH-HHHHHHHHSSCHHHHHHHTGGGGSSCSCCCEEEECCCTTCSTTTTCTTSCCCSCEEEEE
T ss_pred             hhhhcccccccccccccccc-chHHHHHHhhhccccccccccccccceeeeeeccccCCccccccccccccccccccccc
Confidence            99999999999998888876 777788899999999999999986  7889999999999999975     477899999


Q ss_pred             CCeEEEeeEeeeeeCC-----CCCCEEEEEEEeCCCC---------CCCceEEEEEeCCCCCe------EecccccccCC
Q 023057          174 DGGYIINGNKMWCTNG-----PVAQTLVVYAKTDIKA---------GSKGITAFIIEKGMPGF------STAQKLDKLGM  233 (288)
Q Consensus       174 ~~g~~l~G~k~~v~~~-----~~ad~~lv~a~~~~~~---------~~~~~~~~lv~~~~~gv------~~~~~~~~~Gl  233 (288)
                      +|+|+|||+|+||||+     ..||+++|+|++++++         +..++++|+||++.||+      .+...++++|+
T Consensus       157 g~~~vlnG~K~~vt~a~~~~~~~ad~~~v~ar~~~~~~~~~~~~~~~~~g~s~~lVp~~~~g~~~~~~~~~~~~~~~~G~  236 (259)
T d2c12a2         157 GNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGH  236 (259)
T ss_dssp             TTEEEEEEEEECCTTTTTTTSSCCSEEEEEEEECSCTTSCCCTTSCGGGGEEEEEECHHHHHTSCGGGEEEEECCCBSSC
T ss_pred             cchhccceeeeeecCCcccccccceEEEEEEEecCCCccccccccCCCCceEEEEEeCCCCCcccCCCeeecCccccccc
Confidence            9999999999999998     4588899999986532         12478999999887654      44456789999


Q ss_pred             CCCceeeEEeceeeeCCCCccc
Q 023057          234 RGSDTCELVFENCFVPNENVLG  255 (288)
Q Consensus       234 ~~~~~~~v~~~~v~vp~~~~l~  255 (288)
                      +++.+++|+|+||+||++++||
T Consensus       237 ~~~~~~~v~f~dv~Vp~~~llG  258 (259)
T d2c12a2         237 ITTSGPHTRFTEFHVPHENLLC  258 (259)
T ss_dssp             TTCCCCEEEEEEEEEEGGGBCS
T ss_pred             ccCceEEEEEeeEEECHHHeeC
Confidence            9999999999999999999997

>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Peroxisomal acyl-CoA oxidase-II, domains 1 and 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=3.8e-31  Score=225.96  Aligned_cols=215  Identities=17%  Similarity=0.254  Sum_probs=158.7

Q ss_pred             CHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhCCc
Q 023057           32 FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGS  111 (288)
Q Consensus        32 s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~~~~~~  111 (288)
                      ++++. ++++.+++++.+.  |.....+. ..+.+ .+.|+.....++.....++++|+.  ++.....+.+. ...+.+
T Consensus        26 ~~e~~-~~r~~v~~~i~~d--p~f~~~~~-~~~~~-~e~~~~~~~~~~~~~~~~~~~G~~--~~~~~~~~~~~-~~~~~~   97 (267)
T d2ddha3          26 SPENT-RRRREIENLILND--PDFQHEDY-NFLTR-SQRYEVAVKKSATMVKKMREYGIS--DPEEIMWFKNS-VHRGHP   97 (267)
T ss_dssp             SHHHH-HHHHHHHHHHHTC--GGGCCSCG-GGSCH-HHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHH-HHTTCC
T ss_pred             CHHHH-HHHHHHHHHHhcC--cccCCccc-ccCCH-HHHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHhh-hccCCC
Confidence            45677 8888888887653  11111111 11111 145544443333323334444443  34444444443 333444


Q ss_pred             hhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeC--CeEEEee-----Eee
Q 023057          112 VGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVD--GGYIING-----NKM  184 (288)
Q Consensus       112 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~--~g~~l~G-----~k~  184 (288)
                      .+  +.+|..++...|..+|+++||++|||++++|+.++|+++|||++|||...++|+|++++  |.|+|||     +|+
T Consensus        98 ~~--~~v~~~l~~~~i~~~Gt~eqk~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~T~A~~~~~~~~~vlnG~k~~~~K~  175 (267)
T d2ddha3          98 EP--LDLHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTSIKW  175 (267)
T ss_dssp             CT--THHHHHTHHHHHC-CCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSSTTSEE
T ss_pred             ce--ehhhhhhhhhHHHhhCCHHHHHHHHHHHhcCCeeeeehhcccCccccccccccceeecccCceeecCccccceeee
Confidence            33  44566567788999999999999999999999999999999999999999999999877  5599999     699


Q ss_pred             eeeC-CCCCCEEEEEEEeCCCCCCCceEEEEEeC-------CCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccC
Q 023057          185 WCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIEK-------GMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQ  256 (288)
Q Consensus       185 ~v~~-~~~ad~~lv~a~~~~~~~~~~~~~~lv~~-------~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~  256 (288)
                      |++| +..||+++|+|++..+++..++++|+||.       +.|||++.+.++++|+++.+++.+.|+||+||++++|+.
T Consensus       176 wit~~~~~a~~~iv~a~~~~~~~~~G~s~F~V~~~~~~~~~~~pGv~v~~~~~~~G~~~~~~~~i~fd~V~VP~~~lL~~  255 (267)
T d2ddha3         176 WPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFGYEEMDNGYLKMDNYRIPRENMLMK  255 (267)
T ss_dssp             CCTTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCCSSCTTCCCEEEEESSEEEEGGGBCCS
T ss_pred             cCCCCcccCCEEEEeeeccCCCCCCccEEEEEEecCcCccCCCCCeEeccCCCccccCCCceEEEEEeeEEECHHHhCCC
Confidence            9998 78999999999987654556899999994       458999999999999999999999999999999999964

>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Acyl-coenzyme A oxidase 1, domains 1 and 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.96  E-value=2.4e-29  Score=214.95  Aligned_cols=214  Identities=19%  Similarity=0.279  Sum_probs=155.0

Q ss_pred             CHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhCCc
Q 023057           32 FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGS  111 (288)
Q Consensus        32 s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~~~~~~  111 (288)
                      ++++. ++++.+++|+...  |.....+ ...+.+ .+.|....+.+........++|   .+..+...+...+.   -+
T Consensus        27 ~ee~~-~~r~~v~~~~~~d--p~f~~~~-~~~~sr-~e~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~---~~   95 (271)
T d1w07a3          27 SRHAF-EVSDRIARLVASD--PVFEKSN-RARLSR-KELFKSTLRKCAHAFKRIIELR---LNEEEAGRLRHFID---QP   95 (271)
T ss_dssp             SHHHH-HHHHHHHHHHHTC--GGGCCTT-TTSSCH-HHHHHHHHHHHHHHHHHHHHTT---CCHHHHHHHHHHHC---CC
T ss_pred             CHHHH-HHHHHHHHHHhcC--cccCCCC-cCCCCH-HHHHHHHHHHHHHHHHHHHHcC---CChhhhHHHHHHhc---cc
Confidence            56777 8899999998653  2211111 111111 1334332222111111112222   23344433333332   22


Q ss_pred             hhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEe--CCeEEEee-----Eee
Q 023057          112 VGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIING-----NKM  184 (288)
Q Consensus       112 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~--~~g~~l~G-----~k~  184 (288)
                        ..+..|..++...|..+|+++||++|||++.+|+.++|+|+|||++|||...++|+|+++  +|.|+|||     +|+
T Consensus        96 --~~~~vh~~~~~~~i~~~Gt~eQk~~~Lp~l~~G~~~~~~a~TEp~~GSd~~~l~T~A~~d~~gd~~vlng~k~~~~K~  173 (271)
T d1w07a3          96 --AYVDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASKW  173 (271)
T ss_dssp             --CHHHHHHHTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSGGGSEE
T ss_pred             --hHHHHHHHhhHHHHHhhCCHHHHHHhhHHHhCCCeEEEecccCCccccCcccccceeeecCCCceeeecccccceeee
Confidence              335677667888899999999999999999999999999999999999999999999987  56799999     899


Q ss_pred             eeeC-CCCCCEEEEEEEeCCCCCCCceEEEEEe-------CCCCCeEecccccccC---CCCCceeeEEeceeeeCCCCc
Q 023057          185 WCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIE-------KGMPGFSTAQKLDKLG---MRGSDTCELVFENCFVPNENV  253 (288)
Q Consensus       185 ~v~~-~~~ad~~lv~a~~~~~~~~~~~~~~lv~-------~~~~gv~~~~~~~~~G---l~~~~~~~v~~~~v~vp~~~~  253 (288)
                      |++| +..|++++|++++..+++..++++|+||       .+.|||++.+..+++|   +++.+++.|+|+||+||++++
T Consensus       174 wi~~~g~~a~~~vv~a~~~~~~~~~g~~~flV~~~~~~~~~~~pGv~v~~~~~k~G~~~~~~~~~~~i~Fd~VrVP~~~l  253 (271)
T d1w07a3         174 WPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQM  253 (271)
T ss_dssp             CCTTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCBSSSSGGGGSCCEEEEESSEEEEGGGB
T ss_pred             ccCCchhhhhhhheeeeecCCCCCCCEEEEEEeccccCCCCCCCceEEcccccccCccccCCCceEEEEEeeEEECHHHc
Confidence            9998 6789999999998765555678999999       4558999988888887   578889999999999999999


Q ss_pred             ccCCC
Q 023057          254 LGQEG  258 (288)
Q Consensus       254 l~~~~  258 (288)
                      ||..+
T Consensus       254 Lg~~g  258 (271)
T d1w07a3         254 LMRLS  258 (271)
T ss_dssp             CCSSE
T ss_pred             CCCCC
Confidence            98754

>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains
species: Clostridium aminobutyricum [TaxId: 33953]

Probab=99.83  E-value=5.7e-21  Score=162.96  Aligned_cols=131  Identities=15%  Similarity=0.260  Sum_probs=109.8

Q ss_pred             HHHHHhcCCH--HHHHhhchhHhcCCeeEEEEecCCCCCCCCCC--------CeEEEEEeCCeEEEeeEeeeeeCCCCCC
Q 023057          124 INQLVRHGSP--AQKDKYLPKLISGEHVGALAMSEPNAGSDVVG--------MKCKADRVDGGYIINGNKMWCTNGPVAQ  193 (288)
Q Consensus       124 ~~~l~~~g~~--~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~--------~~~~a~~~~~g~~l~G~k~~v~~~~~ad  193 (288)
                      ...+..+|++  +++++|++.+.+++...|.++|||+.+++...        ..+.+++++|||+|||.|.|+|++..||
T Consensus       117 ~~~~~~~g~~~~e~~~~yl~~~~~~dl~~t~altePq~dr~~~~~~q~~~~~~~~v~~~~~~g~vvnG~K~~~T~a~~ad  196 (275)
T d1u8va2         117 YEIDQKYGTNYHKNFTEYLKYIQENDLIVDGAMTDPKGDRGLAPSAQKDPDLFLRIVEKREDGIVVRGAKAHQTGSINSH  196 (275)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHTCCEEEECCCCCSCTTSCGGGCSSTTSSCEEEEECSSEEEEEEEECSCTTCTTCS
T ss_pred             HHHhhhhCcHHHHHHHHHHHHHHhCCeEEEEeeecCCCCCccChhhccCccceEEEEEecCCEEEEeeEEEEecCCCccc
Confidence            3455678887  78999999999999999999999999987653        2366778899999999999999999999


Q ss_pred             EEEEEEEeCCCCC-CCceEEEEEeCCCCCeEecccccccCCCCCce---------------eeEEeceeeeCCCCcc
Q 023057          194 TLVVYAKTDIKAG-SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDT---------------CELVFENCFVPNENVL  254 (288)
Q Consensus       194 ~~lv~a~~~~~~~-~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~---------------~~v~~~~v~vp~~~~l  254 (288)
                      +++|++++...++ ....++|+||.+.||+++...++++|++...+               +.|.||||+||+++|+
T Consensus       197 ~~~v~~~~~~~~~~~~~~~~f~Vp~~tpGv~~~~~~~~~~~r~~~~~~~~~~~s~~f~e~da~vvFddV~VP~e~Vf  273 (275)
T d1u8va2         197 EHIIMPTIAMTEADKDYAVSFACPSDADGLFMIYGRQSCDTRKMEEGADIDLGNKQFGGQEALVVFDNVFIPNDRIF  273 (275)
T ss_dssp             EEEECCSSCCCGGGGGGCEEEEEETTCTTEEEEECCCTTGGGGGSTTCCGGGSSSSCCCCCEEEEEEEEEEEGGGEE
T ss_pred             eEEEEeccCCCCCCCCcEEEEEEeCCCCCeEEecccCCcCCcccCCCCCccccccccCCceeEEEeceEECcHHHee
Confidence            9999998754322 34678999999999999877788888776543               4499999999999875