Citrus Sinensis ID: 023063

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
Protein Sequence
MIENMEEKGSNSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHHHHHHHHHHHHccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHcccccccccccccccccccHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccEEcccccccHHHHHHHHHHHHHHHccccccccHHHHHccccHHHccccccEcccccccc
Coil and Loop (DISEMBL)
mienmeekgsnshvkrqkggmitmpfifSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAAntltnfggtgsltpLIGAFVADAYAGRFWTITIASIIYQIGMICLTIsailpqlrpppcegeqvcqEANKGQVAILYVSLLLAALgsggirpcvvafgadqfdetdpkqatkTWKYFNWYYFVMGAAILVAVTVLVYIQdnigwgwglgipTFAMFLSIIAFLIgyplyrnldpagspfTRLLQVCVAAFRKrkltmvtdpkllyenEELDAAISLGGKLLHTKHMK
Flexible Loop (DISEMBL)
mienmeekgsnshvkrqkggMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGadqfdetdpkQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKRKltmvtdpkllyenEELDAAIslggkllhtkhmk
Low Complexity Region (SEG)
MIENMEEKGSNSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVslllaalgsggIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMK
Disordered region (IsUnstruct)
*******************GMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKL*******
Disordered Region (DISOPRED)
***N****************MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPP***********KGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDET*****TKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKRKLTMVTDPKLLY***************LHT****
Disordered Region (DISEMBL)
***************RQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMK
Disordered Region (DISPRO)
****MEEKGS*SHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKRKLTMVTDPKLLYENEEL*****************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIENMEEKGSNSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	288	2.2.26 [Sep-21-2011]
Q9SX20	596	Probable nitrite transpor	yes	no	0.982	0.474	0.770	1e-124
Q9LFB8	570	Peptide transporter PTR5	no	no	0.958	0.484	0.478	6e-71
Q9M390	570	Peptide transporter PTR1	no	no	0.958	0.484	0.464	4e-70
P46032	585	Peptide transporter PTR2	no	no	0.961	0.473	0.478	8e-70
Q93Z20	590	Probable peptide/nitrate	no	no	0.996	0.486	0.452	2e-66
Q84WG0	545	Probable peptide/nitrate	no	no	0.868	0.458	0.474	1e-61
Q9FNL8	586	Peptide transporter PTR3-	no	no	0.892	0.438	0.424	2e-57
Q9FNL7	582	Peptide transporter PTR3-	no	no	0.888	0.439	0.417	4e-56
Q8LPL2	591	Probable peptide/nitrate	no	no	0.847	0.412	0.449	2e-55
Q9M817	607	Probable peptide transpor	no	no	0.847	0.401	0.431	6e-55

>sp|Q9SX20|PTR18_ARATH Probable nitrite transporter At1g68570 OS=Arabidopsis thaliana GN=At1g68570 PE=2 SV=1

 Score =  444 bits (1141), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 218/283 (77%), Positives = 248/283 (87%)

Query: 6   EEKGSNSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLT 65
           EEK  +    R KGG+ITMPFIF+NE+CEKLAVVGF+ NMISYLTTQLH+PLTKAANTLT
Sbjct: 12  EEKQLHGRPNRPKGGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLT 71

Query: 66  NFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQV 125
           NF GT SLTPL+GAF+AD++AGRFWTIT ASIIYQIGM  LTISAI+P LRPPPC+GE+V
Sbjct: 72  NFAGTSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKGEEV 131

Query: 126 CQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVM 185
           C  A+  Q++ILYV+LLL ALGSGGIRPCVVAFGADQFDE+DP Q TKTW YFNWYYF M
Sbjct: 132 CVVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFNWYYFCM 191

Query: 186 GAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQ 245
           GAA+L+AVTVLV+IQDN+GWG GLGIPT AMFLS+IAF+ G+ LYR+L PAGSPFTRL+Q
Sbjct: 192 GAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPFTRLIQ 251

Query: 246 VCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMK 288
           V VAAFRKRKL MV+DP LLY N+E+DA ISLGGKL HTKHM 
Sbjct: 252 VGVAAFRKRKLRMVSDPSLLYFNDEIDAPISLGGKLTHTKHMS 294

May act as an efflux-type nitrite transporter. Not regulated by the PII protein involved in the regulation of nitrite uptake into higher plant chloroplasts.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1

 Score =  267 bits (683), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 135/282 (47%), Positives = 185/282 (65%), Gaps = 6/282 (2%)

Query: 4   NMEEKGSNSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANT 63
           ++ +K +N   K + G      FI   E CE+LA  G +TN+I+YL  Q++M    A+ +
Sbjct: 15  DIHKKPAN---KNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKS 71

Query: 64  LTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGE 123
           ++N+ GT   TPLIGAF+ADAY GR+WTI    +IY  GM  LTISA +P L  P C GE
Sbjct: 72  VSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGL-TPTCSGE 130

Query: 124 QVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF 183
             C  A  GQ AI +++L L ALG+GGI+PCV +FGADQFD+TD K+      +FNW+YF
Sbjct: 131 -TCH-ATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYF 188

Query: 184 VMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRL 243
           V+    ++A +VLV+IQ N+GWGWGLG+PT AM ++++ F  G   YR   P GSP TR+
Sbjct: 189 VINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRM 248

Query: 244 LQVCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTK 285
           LQV VA+ RK K+ +  D  LLYEN++ +++I    KL HTK
Sbjct: 249 LQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSRKLEHTK 290

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1

 Score =  264 bits (675), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 129/278 (46%), Positives = 174/278 (62%), Gaps = 2/278 (0%)

Query: 11  NSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGT 70
           N   K + G      FI  NE CE+LA  G  TN+++YL ++L+     AAN +TN+ GT
Sbjct: 18  NPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGT 77

Query: 71  GSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEAN 130
             +TPLIGAF+ADAY GR+WTI     IY  GM  LT+SA +P L+P  C  +  C   N
Sbjct: 78  CYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNAD-TCH-PN 135

Query: 131 KGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAIL 190
             Q A+ +V+L + ALG+GGI+PCV +FGADQFDE D  +  K   +FNW+YF +    L
Sbjct: 136 SSQTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFSINVGAL 195

Query: 191 VAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAA 250
           +A TVLV+IQ N+GWGWG G+PT AM +++  F  G   YR   P GSP TR+ QV VAA
Sbjct: 196 IAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAA 255

Query: 251 FRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMK 288
           FRK  + +  D  LL+E  + ++ I    KL+HT ++K
Sbjct: 256 FRKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLK 293

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1

 Score =  263 bits (673), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 133/278 (47%), Positives = 177/278 (63%), Gaps = 1/278 (0%)

Query: 11  NSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGT 70
           N  +K + G     PFI  NE CE+LA  G   N+I+YLTT+LH     AA  +T + GT
Sbjct: 35  NPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNVTTWQGT 94

Query: 71  GSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEAN 130
             LTPLIGA +ADAY GR+WTI   S IY IGM  LT+SA +P L+P  C G+  C  A 
Sbjct: 95  CYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAECIGD-FCPSAT 153

Query: 131 KGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAIL 190
             Q A+ +  L L ALG+GGI+PCV +FGADQFD+TD ++  +   +FNW+YF +    L
Sbjct: 154 PAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFFNWFYFSINIGAL 213

Query: 191 VAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAA 250
           V+ ++LV+IQ+N GWG G GIPT  M L+I +F  G PLYR   P GSP TR+ QV VA+
Sbjct: 214 VSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSPITRISQVVVAS 273

Query: 251 FRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMK 288
           FRK  + +  D  LLYE ++ ++AI+   K+ HT   +
Sbjct: 274 FRKSSVKVPEDATLLYETQDKNSAIAGSRKIEHTDDCQ 311

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1

 Score =  253 bits (645), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 133/294 (45%), Positives = 180/294 (61%), Gaps = 7/294 (2%)

Query: 2   IENMEEKGS-----NSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMP 56
           + +  E GS     N   K++ G     PFI  NE CE+LA  G   N+I+Y T++LH  
Sbjct: 32  LSSTAEDGSIDIYGNPPSKKKTGNWKACPFILGNECCERLAYYGIAKNLITYYTSELHES 91

Query: 57  LTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLR 116
              AA+ +  + GT  +TPLIGA +AD+Y GR+WTI   S IY IGM  LT+SA LP L+
Sbjct: 92  NVSAASDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMALLTLSASLPVLK 151

Query: 117 PPPCEGEQ--VCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKT 174
           P  C G    +C  A   Q A+ +  L L ALG+GGI+PCV +FGADQFD+TDP++  + 
Sbjct: 152 PAACAGVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTDPRERVRK 211

Query: 175 WKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLD 234
             +FNW+YF +     ++ T+LV++Q+N+GWG G  IPT  M +SI +F IG PLYR   
Sbjct: 212 ASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQK 271

Query: 235 PAGSPFTRLLQVCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMK 288
           P GSP TR+ QV VAA+RK KL +  D   LYE  E ++ I+   K+ HT   K
Sbjct: 272 PGGSPITRVCQVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSRKIQHTDGYK 325

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WG0|PTR26_ARATH Probable peptide/nitrate transporter At2g02020 OS=Arabidopsis thaliana GN=At2g02020 PE=2 SV=2

 Score =  236 bits (602), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 119/251 (47%), Positives = 156/251 (62%), Gaps = 1/251 (0%)

Query: 11  NSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGT 70
           N  +K+  G     PFIF+NE CE+LA  G   N+I+Y T +LH     AA  +  + GT
Sbjct: 36  NPPLKQTTGNWKACPFIFANECCERLAYYGIAKNLITYFTNELHETNVSAARHVMTWQGT 95

Query: 71  GSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEAN 130
             +TPLIGA +ADAY GR+WTI   S IY  GM+ LT+SA +P L+P  C G  +C  A 
Sbjct: 96  CYITPLIGALIADAYWGRYWTIACFSAIYFTGMVALTLSASVPGLKPAECIG-SLCPPAT 154

Query: 131 KGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAIL 190
             Q  +L+  L L ALG+GGI+PCV +FGADQFD+TDP +  +   +FNW+YF +     
Sbjct: 155 MVQSTVLFSGLYLIALGTGGIKPCVSSFGADQFDKTDPSERVRKASFFNWFYFTINIGAF 214

Query: 191 VAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAA 250
           V+ TVLV+IQ+N GW  G  IPT  M L+ ++F  G PLYR   P GSP T + QV VAA
Sbjct: 215 VSSTVLVWIQENYGWELGFLIPTVFMGLATMSFFFGTPLYRFQKPRGSPITSVCQVLVAA 274

Query: 251 FRKRKLTMVTD 261
           +RK  L +  D
Sbjct: 275 YRKSNLKVPED 285

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNL8|PTR4_ARATH Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1

 Score =  223 bits (567), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 110/259 (42%), Positives = 159/259 (61%), Gaps = 2/259 (0%)

Query: 11  NSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGT 70
           N   + Q G      F+   EV E++A  G ++N++ Y+TT+LH    K++N +TN+ GT
Sbjct: 21  NRVRRSQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMTTKLHQGTVKSSNNVTNWVGT 80

Query: 71  GSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQV--CQE 128
             LTP++GA+VADA+ GR+ T  I+S IY +GM  LT+S  LP L+PP C    V  C++
Sbjct: 81  SWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSVSLPGLKPPKCSTANVENCEK 140

Query: 129 ANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAA 188
           A+  Q+A+ + +L   A+G+GG +P +   GADQFDE DPK       +FNW+ F +   
Sbjct: 141 ASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFDPKDKIHKHSFFNWWMFSIFFG 200

Query: 189 ILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCV 248
              A TVLVY+QDN+GW  G G+ T  +  SI  FL+G  LYR+  P GSPFT++ +V V
Sbjct: 201 TFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGTRLYRHKLPMGSPFTKMARVIV 260

Query: 249 AAFRKRKLTMVTDPKLLYE 267
           A+ RK +  M +D    YE
Sbjct: 261 ASLRKAREPMSSDSTRFYE 279

Peptide transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNL7|PTR3_ARATH Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1

 Score =  218 bits (555), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 111/266 (41%), Positives = 163/266 (61%), Gaps = 10/266 (3%)

Query: 14  VKRQ-KGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGS 72
           V+R  +G      F+   EV E++A  G ++N+  Y+TT+LH    K++N +TN+ GT  
Sbjct: 23  VRRSIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMTTKLHQGTVKSSNNVTNWVGTSW 82

Query: 73  LTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQV--CQEAN 130
           LTP++GA+V DA  GR+ T  I+  IY  GM+ LT+S  +P ++PP C    V  C++A+
Sbjct: 83  LTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTIPGIKPPECSTTNVENCEKAS 142

Query: 131 KGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAIL 190
             Q+A+ + +L   A+G+GG +P +   GADQFD  DPK+ T+   +FNW+ F +    L
Sbjct: 143 VLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFDPKEKTQKLSFFNWWMFSIFFGTL 202

Query: 191 VAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAA 250
            A TVLVY+QDN+GW  G G+PT  + +SI  FL+G P YR+  P GSPFT++ +V VA+
Sbjct: 203 FANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGTPFYRHKLPTGSPFTKMARVIVAS 262

Query: 251 FRKRKLTMVTD-------PKLLYENE 269
           FRK    M  D       P L YE +
Sbjct: 263 FRKANAPMTHDITSFHELPSLEYERK 288

Peptide transporter involved in stress tolerance in seeds during germination and in defense against virulent bacterial pathogens.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPL2|PTR32_ARATH Probable peptide/nitrate transporter At3g16180 OS=Arabidopsis thaliana GN=At3g16180 PE=2 SV=2

 Score =  216 bits (550), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 111/247 (44%), Positives = 151/247 (61%), Gaps = 3/247 (1%)

Query: 15  KRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLT 74
           +R KGG++TMPFI +NE  EK+A  G   NMI YL +   + L K    L  +    +  
Sbjct: 21  RRTKGGLLTMPFIIANEGFEKVASYGLLQNMILYLMSDYRLGLVKGQTVLFMWVAATNFM 80

Query: 75  PLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPC--EGEQVCQEANKG 132
           PL+GAF++D+Y GRF TI IAS+   +GM+ L ++A+LPQ++P PC       C  A   
Sbjct: 81  PLVGAFLSDSYLGRFLTIVIASLSSLLGMVVLWLTAMLPQVKPSPCVATAGTNCSSATSS 140

Query: 133 QVAILYVSLLLAALGSGGIRPCVVAFGADQFD-ETDPKQATKTWKYFNWYYFVMGAAILV 191
           Q+A+LY +  L ++GSGGIRPC +AFGADQ D + +PK       +F WYY     A+L+
Sbjct: 141 QLALLYTAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYYASSSVAVLI 200

Query: 192 AVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAF 251
           A TV+VYIQD++GW  G GIP   M L+   F+   PLY   D + S FT L QV  AA+
Sbjct: 201 AFTVIVYIQDHLGWKIGFGIPAILMLLAGFLFVFASPLYVKRDVSKSLFTGLAQVVAAAY 260

Query: 252 RKRKLTM 258
            KR LT+
Sbjct: 261 VKRNLTL 267

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M817|PTR6_ARATH Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1

 Score =  214 bits (545), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 107/248 (43%), Positives = 154/248 (62%), Gaps = 4/248 (1%)

Query: 15  KRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLT 74
           K+ KGG+ITMPFI +NE  EK+A  G   NMI YL       + K  N L  +    + T
Sbjct: 19  KKTKGGIITMPFIIANEAFEKVASYGLLPNMIMYLIRDYRFGVAKGTNVLFMWSAASNFT 78

Query: 75  PLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQV---CQEANK 131
           PL+GAF++D+Y GRF TI+IAS+   +GM+ L ++A+LPQ++P PC+       C  +  
Sbjct: 79  PLLGAFLSDSYLGRFLTISIASLSSFLGMVLLWLTAMLPQVKPSPCDPTAAGSHCGSSTA 138

Query: 132 GQVAILYVSLLLAALGSGGIRPCVVAFGADQFD-ETDPKQATKTWKYFNWYYFVMGAAIL 190
            Q+A+LY +  L ++GSGGIRPC +AFGADQ D + +PK       +F WYY     A+L
Sbjct: 139 SQLALLYSAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYYASSAVAVL 198

Query: 191 VAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAA 250
           +A T +VYIQ+++GW  G G+P   M ++ + F++  PLY       S FT L Q  VAA
Sbjct: 199 IAFTGIVYIQEHLGWKIGFGVPAVLMLIAALLFILASPLYVTRGVTKSLFTGLAQAIVAA 258

Query: 251 FRKRKLTM 258
           ++KRKL++
Sbjct: 259 YKKRKLSL 266

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
255576453	286	nitrate transporter, putative [Ricinus c	0.989	0.996	0.826	1e-135
297737830	795	unnamed protein product [Vitis vinifera]	0.979	0.354	0.789	1e-134
359472693	672	PREDICTED: probable nitrite transporter	0.979	0.419	0.789	1e-133
357488469	584	Peptide transporter PTR [Medicago trunca	0.986	0.486	0.772	1e-132
356495939	576	PREDICTED: probable nitrite transporter	0.979	0.489	0.802	1e-131
449465908	584	PREDICTED: probable nitrite transporter	0.986	0.486	0.721	1e-127
449514761	575	PREDICTED: probable nitrite transporter	0.954	0.478	0.734	1e-125
356498272	576	PREDICTED: probable nitrite transporter	0.947	0.473	0.783	1e-124
15221439	596	putative nitrite transporter [Arabidopsi	0.982	0.474	0.770	1e-122
297838617	597	proton-dependent oligopeptide transport	0.982	0.474	0.771	1e-121

>gi|255576453|ref|XP_002529118.1| nitrate transporter, putative [Ricinus communis] gi|223531397|gb|EEF33231.1| nitrate transporter, putative [Ricinus communis]

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 238/288 (82%), Positives = 269/288 (93%), Gaps = 3/288 (1%)

Query: 2   IENMEEKGSNSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAA 61
           +E MEEKG ++  K QKGGMITMPFIF+NE CEKLAVVGFNTNMISYLTTQLH+PLTKAA
Sbjct: 1   MEKMEEKGFDA--KGQKGGMITMPFIFANEACEKLAVVGFNTNMISYLTTQLHLPLTKAA 58

Query: 62  NTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCE 121
           NTLTNF GT SLTPL+GAF+AD+YAGRFWTIT+ASIIYQ+GM  LT+SA+LP LRPPPC+
Sbjct: 59  NTLTNFSGTSSLTPLLGAFLADSYAGRFWTITVASIIYQLGMTSLTLSAVLPNLRPPPCK 118

Query: 122 -GEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW 180
            G++VCQEA+ GQ+AILYVSLLL ALGSGGIRPCVVAFGADQFDETDPKQ TKTW+YFNW
Sbjct: 119 LGDEVCQEADAGQLAILYVSLLLGALGSGGIRPCVVAFGADQFDETDPKQTTKTWRYFNW 178

Query: 181 YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPF 240
           YYFVMG +IL+AVTVLVY+QDNIGWGWGLGIPT AMFLSIIAF++GYPLYRNLDPAGSPF
Sbjct: 179 YYFVMGVSILLAVTVLVYVQDNIGWGWGLGIPTIAMFLSIIAFIVGYPLYRNLDPAGSPF 238

Query: 241 TRLLQVCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMK 288
           TRLLQVCVAAF+KRKL++V+DPKLLY+N+ELDA IS+GG L+HTKHMK
Sbjct: 239 TRLLQVCVAAFKKRKLSVVSDPKLLYQNDELDAPISIGGNLVHTKHMK 286

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737830|emb|CBI27031.3| unnamed protein product [Vitis vinifera]

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 225/285 (78%), Positives = 256/285 (89%), Gaps = 3/285 (1%)

Query: 5   MEEKGSNSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTL 64
           ME+KGS  H  R KGG+ITMPFIF+NE CEKLAVVGF+ NMI+YLT QLH+PLTKAANT+
Sbjct: 1   MEKKGS--HGGRTKGGLITMPFIFANEACEKLAVVGFSANMITYLTQQLHLPLTKAANTI 58

Query: 65  TNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGE- 123
           TNF GT SLTPL+GAF++DAYAGRFWTIT+ASI++Q+GM  LT+SA+LPQLRPPPC+GE 
Sbjct: 59  TNFSGTASLTPLLGAFISDAYAGRFWTITVASILWQMGMTSLTLSAVLPQLRPPPCKGEH 118

Query: 124 QVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF 183
           QVCQEA+ GQ+AILY SLLL ALG+GGIRPCVVAFGADQFDETDPK+ TKTW +FNWYYF
Sbjct: 119 QVCQEADGGQLAILYGSLLLTALGAGGIRPCVVAFGADQFDETDPKEKTKTWNFFNWYYF 178

Query: 184 VMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRL 243
           VMGA+ILVAVTVLVYIQDN+GWGWGLGIPT AMFLSII F++GYPLYRNLDP GSPFTRL
Sbjct: 179 VMGASILVAVTVLVYIQDNVGWGWGLGIPTTAMFLSIITFVVGYPLYRNLDPVGSPFTRL 238

Query: 244 LQVCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMK 288
           LQVCVAA +KR L MV+DP LLYEN+ELDA+IS  GKLLHT  +K
Sbjct: 239 LQVCVAASKKRNLRMVSDPNLLYENDELDASISAAGKLLHTNELK 283

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359472693|ref|XP_002282337.2| PREDICTED: probable nitrite transporter At1g68570 [Vitis vinifera]

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 225/285 (78%), Positives = 256/285 (89%), Gaps = 3/285 (1%)

Query: 5   MEEKGSNSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTL 64
           ME+KGS  H  R KGG+ITMPFIF+NE CEKLAVVGF+ NMI+YLT QLH+PLTKAANT+
Sbjct: 93  MEKKGS--HGGRTKGGLITMPFIFANEACEKLAVVGFSANMITYLTQQLHLPLTKAANTI 150

Query: 65  TNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGE- 123
           TNF GT SLTPL+GAF++DAYAGRFWTIT+ASI++Q+GM  LT+SA+LPQLRPPPC+GE 
Sbjct: 151 TNFSGTASLTPLLGAFISDAYAGRFWTITVASILWQMGMTSLTLSAVLPQLRPPPCKGEH 210

Query: 124 QVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF 183
           QVCQEA+ GQ+AILY SLLL ALG+GGIRPCVVAFGADQFDETDPK+ TKTW +FNWYYF
Sbjct: 211 QVCQEADGGQLAILYGSLLLTALGAGGIRPCVVAFGADQFDETDPKEKTKTWNFFNWYYF 270

Query: 184 VMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRL 243
           VMGA+ILVAVTVLVYIQDN+GWGWGLGIPT AMFLSII F++GYPLYRNLDP GSPFTRL
Sbjct: 271 VMGASILVAVTVLVYIQDNVGWGWGLGIPTTAMFLSIITFVVGYPLYRNLDPVGSPFTRL 330

Query: 244 LQVCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMK 288
           LQVCVAA +KR L MV+DP LLYEN+ELDA+IS  GKLLHT  +K
Sbjct: 331 LQVCVAASKKRNLRMVSDPNLLYENDELDASISAAGKLLHTNELK 375

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357488469|ref|XP_003614522.1| Peptide transporter PTR [Medicago truncatula] gi|355515857|gb|AES97480.1| Peptide transporter PTR [Medicago truncatula]

 Score =  475 bits (1223), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 221/286 (77%), Positives = 258/286 (90%), Gaps = 2/286 (0%)

Query: 3   ENMEEKGSNSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAAN 62
           E ME+ G+ +  +R+KGG+ TMPFIF+NEV EKLAVVGFN NMISYLTTQLHMPLTKAAN
Sbjct: 6   EKMEKNGNLT--RRKKGGLATMPFIFANEVTEKLAVVGFNANMISYLTTQLHMPLTKAAN 63

Query: 63  TLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEG 122
           TLTNFGGT SLTPL+GAF++D++AG+F TIT+ASIIYQIGMI LT+SA+LPQLRPPPC+G
Sbjct: 64  TLTNFGGTSSLTPLLGAFISDSFAGKFMTITVASIIYQIGMISLTMSAVLPQLRPPPCKG 123

Query: 123 EQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY 182
           E+VCQEA+  Q+AILYVSLLL+ALGSGGIRPCVVAFGADQFDE+DP Q T+TW YFNWYY
Sbjct: 124 EEVCQEASSRQLAILYVSLLLSALGSGGIRPCVVAFGADQFDESDPNQKTRTWTYFNWYY 183

Query: 183 FVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTR 242
           FVMG AILVAVTVLVYIQDN+GWGWGLGIPT AMF+SIIAF+ GYPLYRNL+P GSPFTR
Sbjct: 184 FVMGTAILVAVTVLVYIQDNVGWGWGLGIPTLAMFISIIAFIGGYPLYRNLNPEGSPFTR 243

Query: 243 LLQVCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMK 288
           L++V VAAFRKRK+  V +  LLY+N+ELDA+I+LGGKLLH+  +K
Sbjct: 244 LVKVGVAAFRKRKIPKVPNSTLLYQNDELDASITLGGKLLHSDQLK 289

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495939|ref|XP_003516828.1| PREDICTED: probable nitrite transporter At1g68570-like [Glycine max]

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 228/284 (80%), Positives = 262/284 (92%), Gaps = 2/284 (0%)

Query: 5   MEEKGSNSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTL 64
           ME+K   +H +R+KGG+ITMPFIF NEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTL
Sbjct: 1   MEQK--ENHARRKKGGLITMPFIFGNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTL 58

Query: 65  TNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQ 124
           TNFGGT SLTPL+GAF+AD+YAG+FWT+T+ASIIYQIGMI LT+SA+LPQ RPPPC+GE+
Sbjct: 59  TNFGGTASLTPLLGAFIADSYAGKFWTVTLASIIYQIGMISLTLSAVLPQFRPPPCKGEE 118

Query: 125 VCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV 184
           VCQ+A+ GQ+AILY+SLLL ALGSGGIRPC+VAFGADQFDE+DPKQ T+TW YFNWYYFV
Sbjct: 119 VCQQASAGQLAILYISLLLGALGSGGIRPCIVAFGADQFDESDPKQTTRTWTYFNWYYFV 178

Query: 185 MGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLL 244
           MG AILVAVTVLVYIQDNIGWG GLGIPT AMFLSIIAF++GYPLYRNL+P+GSPFTRL+
Sbjct: 179 MGVAILVAVTVLVYIQDNIGWGIGLGIPTIAMFLSIIAFIVGYPLYRNLNPSGSPFTRLV 238

Query: 245 QVCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMK 288
           QV VAAFRKRK+  V+ P LLY+N+ELDA+IS+GGKLLH+  MK
Sbjct: 239 QVAVAAFRKRKVPNVSHPSLLYQNDELDASISMGGKLLHSGQMK 282

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465908|ref|XP_004150669.1| PREDICTED: probable nitrite transporter At1g68570-like [Cucumis sativus]

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 205/284 (72%), Positives = 248/284 (87%)

Query: 5   MEEKGSNSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTL 64
           ME +    H++R+KGG+ITMPFIF+NE+CEK+AVVGFNTNMISYLT QLHMP TKAANT+
Sbjct: 1   MEMEKKEKHMERKKGGLITMPFIFANEICEKIAVVGFNTNMISYLTKQLHMPSTKAANTI 60

Query: 65  TNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQ 124
           TNF GT SLTPLIGAF+AD+Y GRFWTIT+ASI+YQIGM+ LT SA++P LRPPPC+  +
Sbjct: 61  TNFSGTASLTPLIGAFIADSYVGRFWTITVASILYQIGMVSLTTSAVVPGLRPPPCKAGE 120

Query: 125 VCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV 184
           +C+EA  GQ+ ILYVSLLL ALGSGGIRPCVV+FGADQF+E DPK+ TKT+KYFNWYYF 
Sbjct: 121 ICKEATGGQLGILYVSLLLTALGSGGIRPCVVSFGADQFEEGDPKRGTKTYKYFNWYYFA 180

Query: 185 MGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLL 244
           MGA++LVAVTVLVY+QDNIGWGWG GIPT AM +SII F++GYP+YR+LDP+GSPFTRLL
Sbjct: 181 MGASMLVAVTVLVYVQDNIGWGWGFGIPTIAMLVSIITFVVGYPIYRHLDPSGSPFTRLL 240

Query: 245 QVCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMK 288
           QV VAA++KRK+ +V+D  LLY+N ++D  IS  G LLHTKHM+
Sbjct: 241 QVGVAAYKKRKVCIVSDSNLLYQNRDIDDPISRDGNLLHTKHMR 284

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449514761|ref|XP_004164473.1| PREDICTED: probable nitrite transporter At1g68570-like [Cucumis sativus]

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 202/275 (73%), Positives = 244/275 (88%)

Query: 14  VKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSL 73
           ++R+KGG+ITMPFIF+NE+CEK+AVVGFNTNMISYLT QLHMP TKAANT+TNF GT SL
Sbjct: 1   MERKKGGLITMPFIFANEICEKIAVVGFNTNMISYLTKQLHMPSTKAANTITNFSGTASL 60

Query: 74  TPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQ 133
           TPLIGAF+AD+Y GRFWTIT+ASI+YQIGM+ LT SA++P LRPPPC+  ++C+EA  GQ
Sbjct: 61  TPLIGAFIADSYVGRFWTITVASILYQIGMVSLTTSAVVPGLRPPPCKAGEICKEATGGQ 120

Query: 134 VAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAV 193
           + ILYVSLLL ALGSGGIRPCVV+FGADQF+E DPK+ TKT+KYFNWYYF MGA++LVAV
Sbjct: 121 LGILYVSLLLTALGSGGIRPCVVSFGADQFEEGDPKRGTKTYKYFNWYYFAMGASMLVAV 180

Query: 194 TVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRK 253
           TVLVY+QDNIGWGWG GIPT AM +SII F++GYP+YR+LDP+GSPFTRLLQV VAA++K
Sbjct: 181 TVLVYVQDNIGWGWGFGIPTIAMLVSIITFVVGYPIYRHLDPSGSPFTRLLQVGVAAYKK 240

Query: 254 RKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMK 288
           RK+ +V+D  LLY+N ++D  IS  G LLHTKHM+
Sbjct: 241 RKVCIVSDSNLLYQNRDIDDPISRDGNLLHTKHMR 275

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498272|ref|XP_003517977.1| PREDICTED: probable nitrite transporter At1g68570-like [Glycine max]

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 214/273 (78%), Positives = 250/273 (91%)

Query: 16  RQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTP 75
           R+KGG+ITMPFIF+NEVCEKLAVVGFNTNM SYLTTQLHMPLTKAANTLTNFGGT SLTP
Sbjct: 10  RKKGGLITMPFIFANEVCEKLAVVGFNTNMNSYLTTQLHMPLTKAANTLTNFGGTASLTP 69

Query: 76  LIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVA 135
           L+GAF+AD+YAG+FWT+T+ASI+YQIGMI LT+SA+LPQ RPPPC+GE+VC++A+ GQ+A
Sbjct: 70  LLGAFIADSYAGKFWTVTVASILYQIGMISLTLSAVLPQFRPPPCKGEEVCRQASAGQLA 129

Query: 136 ILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTV 195
           +LY+SLLL ALGSGGIRPC+VAFGADQF E+DPKQ TKTW YFNWYYFVMG A+LVAVTV
Sbjct: 130 VLYISLLLGALGSGGIRPCIVAFGADQFHESDPKQNTKTWSYFNWYYFVMGVAMLVAVTV 189

Query: 196 LVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKRK 255
           LVYIQDNIGWG GLGIPT AMF SI AF++GYPLYRNL+P GSP+TRL+QV VAAF KR 
Sbjct: 190 LVYIQDNIGWGIGLGIPTIAMFFSIAAFIVGYPLYRNLNPDGSPYTRLVQVIVAAFHKRN 249

Query: 256 LTMVTDPKLLYENEELDAAISLGGKLLHTKHMK 288
           +  +++P LLY+N+ELDA+ISL GKLLHT+ MK
Sbjct: 250 VPYLSNPSLLYQNDELDASISLEGKLLHTEQMK 282

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221439|ref|NP_177024.1| putative nitrite transporter [Arabidopsis thaliana] gi|75266596|sp|Q9SX20.1|PTR18_ARATH RecName: Full=Probable nitrite transporter At1g68570 gi|5734721|gb|AAD49986.1|AC008075_19 Similar to gb|AF023472 peptide transporter from Hordeum vulgare and is a member of the PF|00854 Peptide transporter family. ESTs gb|T41927 and gb|AA395024 come from this gene [Arabidopsis thaliana] gi|20147231|gb|AAM10330.1| At1g68570/F24J5_7 [Arabidopsis thaliana] gi|25090385|gb|AAN72289.1| At1g68570/F24J5_7 [Arabidopsis thaliana] gi|110742209|dbj|BAE99031.1| peptide transporter like [Arabidopsis thaliana] gi|332196691|gb|AEE34812.1| putative nitrite transporter [Arabidopsis thaliana]

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 218/283 (77%), Positives = 248/283 (87%)

Query: 6   EEKGSNSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLT 65
           EEK  +    R KGG+ITMPFIF+NE+CEKLAVVGF+ NMISYLTTQLH+PLTKAANTLT
Sbjct: 12  EEKQLHGRPNRPKGGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLT 71

Query: 66  NFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQV 125
           NF GT SLTPL+GAF+AD++AGRFWTIT ASIIYQIGM  LTISAI+P LRPPPC+GE+V
Sbjct: 72  NFAGTSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKGEEV 131

Query: 126 CQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVM 185
           C  A+  Q++ILYV+LLL ALGSGGIRPCVVAFGADQFDE+DP Q TKTW YFNWYYF M
Sbjct: 132 CVVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFNWYYFCM 191

Query: 186 GAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQ 245
           GAA+L+AVTVLV+IQDN+GWG GLGIPT AMFLS+IAF+ G+ LYR+L PAGSPFTRL+Q
Sbjct: 192 GAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPFTRLIQ 251

Query: 246 VCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMK 288
           V VAAFRKRKL MV+DP LLY N+E+DA ISLGGKL HTKHM 
Sbjct: 252 VGVAAFRKRKLRMVSDPSLLYFNDEIDAPISLGGKLTHTKHMS 294

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297838617|ref|XP_002887190.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297333031|gb|EFH63449.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 219/284 (77%), Positives = 247/284 (86%), Gaps = 1/284 (0%)

Query: 6   EEKGSNSHVKRQKGGMITMPFIFS-NEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTL 64
           EEK  +    R KGG+ITMPFIF  NE+CEKLAVVGF+ NMISYLTTQLH+PLTKAANTL
Sbjct: 12  EEKQLHGRPNRPKGGLITMPFIFGMNEICEKLAVVGFHANMISYLTTQLHLPLTKAANTL 71

Query: 65  TNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQ 124
           TNF GT SLTPL+GAF+AD++AGRFWTIT ASIIYQIGM  LTISAI+P LRPPPC+GE+
Sbjct: 72  TNFAGTSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKGEE 131

Query: 125 VCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV 184
           VC  A+  Q+ ILYV+LLL ALGSGGIRPCVVAFGADQFDE+DP Q TKTW YFNWYYF 
Sbjct: 132 VCVVADTAQLTILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFNWYYFC 191

Query: 185 MGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLL 244
           MGAA+L+AVTVLV+IQDN+GWG GLGIPT AMFLS+IAF+ G+ LYR+LDPAGSPFTRL+
Sbjct: 192 MGAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLDPAGSPFTRLI 251

Query: 245 QVCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMK 288
           QV VAAFRKRKL MV+DP LLY N+E+DA ISLGGKL HTKHM 
Sbjct: 252 QVGVAAFRKRKLRMVSDPSLLYFNDEIDAPISLGGKLTHTKHMS 295

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
TAIR|locus:2026884	596	AT1G68570 [Arabidopsis thalian	0.979	0.473	0.741	6.6e-113
TAIR|locus:2150124	570	PTR5 "peptide transporter 5" [	0.930	0.470	0.464	1.8e-62
TAIR|locus:2080235	570	PTR1 "peptide transporter 1" [	0.944	0.477	0.445	2.7e-61
TAIR|locus:2041125	585	PTR2 "peptide transporter 2" [	0.947	0.466	0.459	1.2e-60
TAIR|locus:2018032	590	PTR6 "peptide transporter 6" [	0.965	0.471	0.439	1.3e-59
TAIR|locus:2041140	545	PTR4 "peptide transporter 4" [	0.868	0.458	0.446	7e-54
TAIR|locus:2161428	586	AT5G46040 [Arabidopsis thalian	0.913	0.448	0.402	1.7e-50
TAIR|locus:2008855	590	NRT1.1 "nitrate transporter 1.	0.947	0.462	0.401	3.6e-50
TAIR|locus:2161438	582	PTR3 "peptide transporter 3" [	0.899	0.445	0.396	7.4e-50
TAIR|locus:2037452	607	AT1G52190 [Arabidopsis thalian	0.847	0.401	0.411	6.7e-49

TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)]

 Score = 1114 (397.2 bits), Expect = 6.6e-113, P = 6.6e-113
 Identities = 209/282 (74%), Positives = 238/282 (84%)

Query:     6 EEKGSNSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLT 65
             EEK  +    R KGG+ITMPFIF+NE+CEKLAVVGF+ NMISYLTTQLH+PLTKAANTLT
Sbjct:    12 EEKQLHGRPNRPKGGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLT 71

Query:    66 NFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQV 125
             NF GT SLTPL+GAF+AD++AGRFWTIT ASIIYQIGM  LTISAI+P LRPPPC+GE+V
Sbjct:    72 NFAGTSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKGEEV 131

Query:   126 CQEANKGQVAILYVXXXXXXXXXXXIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVM 185
             C  A+  Q++ILYV           IRPCVVAFGADQFDE+DP Q TKTW YFNWYYF M
Sbjct:   132 CVVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFNWYYFCM 191

Query:   186 GAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQ 245
             GAA+L+AVTVLV+IQDN+GWG GLGIPT AMFLS+IAF+ G+ LYR+L PAGSPFTRL+Q
Sbjct:   192 GAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPFTRLIQ 251

Query:   246 VCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHM 287
             V VAAFRKRKL MV+DP LLY N+E+DA ISLGGKL HTKHM
Sbjct:   252 VGVAAFRKRKLRMVSDPSLLYFNDEIDAPISLGGKLTHTKHM 293

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
 Identities = 126/271 (46%), Positives = 170/271 (62%)

Query:    15 KRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLT 74
             K + G      FI   E CE+LA  G +TN+I+YL  Q++M    A+ +++N+ GT   T
Sbjct:    23 KNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSVSNWSGTCYAT 82

Query:    75 PLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQV 134
             PLIGAF+ADAY GR+WTI    +IY  GM  LTISA +P L P  C GE  C  A  GQ 
Sbjct:    83 PLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTPT-CSGE-TCH-ATAGQT 139

Query:   135 AILYVXXXXXXXXXXXIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVT 194
             AI ++           I+PCV +FGADQFD+TD K+      +FNW+YFV+    ++A +
Sbjct:   140 AITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYFVINVGAMIASS 199

Query:   195 VLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKR 254
             VLV+IQ N+GWGWGLG+PT AM ++++ F  G   YR   P GSP TR+LQV VA+ RK 
Sbjct:   200 VLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRMLQVIVASCRKS 259

Query:   255 KLTMVTDPKLLYENEELDAAISLGGKLLHTK 285
             K+ +  D  LLYEN++ +++I    KL HTK
Sbjct:   260 KVKIPEDESLLYENQDAESSIIGSRKLEHTK 290

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
 Identities = 122/274 (44%), Positives = 164/274 (59%)

Query:    15 KRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLT 74
             K + G      FI  NE CE+LA  G  TN+++YL ++L+     AAN +TN+ GT  +T
Sbjct:    22 KEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYIT 81

Query:    75 PLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQV 134
             PLIGAF+ADAY GR+WTI     IY  GM  LT+SA +P L+P  C  +  C   N  Q 
Sbjct:    82 PLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNAD-TCHP-NSSQT 139

Query:   135 AILYVXXXXXXXXXXXIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVT 194
             A+ +V           I+PCV +FGADQFDE D  +  K   +FNW+YF +    L+A T
Sbjct:   140 AVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFSINVGALIAAT 199

Query:   195 VLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKR 254
             VLV+IQ N+GWGWG G+PT AM +++  F  G   YR   P GSP TR+ QV VAAFRK 
Sbjct:   200 VLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKI 259

Query:   255 KLTMVTDPKLLYENEELDAAISLGGKLLHTKHMK 288
              + +  D  LL+E  + ++ I    KL+HT ++K
Sbjct:   260 SVKVPEDKSLLFETADDESNIKGSRKLVHTDNLK 293

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0015824 "proline transport" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 126/274 (45%), Positives = 168/274 (61%)

Query:    11 NSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGT 70
             N  +K + G     PFI  NE CE+LA  G   N+I+YLTT+LH     AA  +T + GT
Sbjct:    35 NPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNVTTWQGT 94

Query:    71 GSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEAN 130
               LTPLIGA +ADAY GR+WTI   S IY IGM  LT+SA +P L+P  C G+  C  A 
Sbjct:    95 CYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAECIGD-FCPSAT 153

Query:   131 KGQVAILYVXXXXXXXXXXXIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAIL 190
               Q A+ +            I+PCV +FGADQFD+TD ++  +   +FNW+YF +    L
Sbjct:   154 PAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFFNWFYFSINIGAL 213

Query:   191 VAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAA 250
             V+ ++LV+IQ+N GWG G GIPT  M L+I +F  G PLYR   P GSP TR+ QV VA+
Sbjct:   214 VSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSPITRISQVVVAS 273

Query:   251 FRKRKLTMVTDPKLLYENEELDAAISLGGKLLHT 284
             FRK  + +  D  LLYE ++ ++AI+   K+ HT
Sbjct:   274 FRKSSVKVPEDATLLYETQDKNSAIAGSRKIEHT 307

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0015334 "high affinity oligopeptide transporter activity" evidence=IDA

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0015197 "peptide transporter activity" evidence=ISS

GO:0015833 "peptide transport" evidence=TAS

TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 123/280 (43%), Positives = 167/280 (59%)

Query:    11 NSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGT 70
             N   K++ G     PFI  NE CE+LA  G   N+I+Y T++LH     AA+ +  + GT
Sbjct:    46 NPPSKKKTGNWKACPFILGNECCERLAYYGIAKNLITYYTSELHESNVSAASDVMIWQGT 105

Query:    71 GSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEG--EQVCQE 128
               +TPLIGA +AD+Y GR+WTI   S IY IGM  LT+SA LP L+P  C G    +C  
Sbjct:   106 CYITPLIGAVIADSYWGRYWTIASFSAIYFIGMALLTLSASLPVLKPAACAGVAAALCSP 165

Query:   129 ANKGQVAILYVXXXXXXXXXXXIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAA 188
             A   Q A+ +            I+PCV +FGADQFD+TDP++  +   +FNW+YF +   
Sbjct:   166 ATTVQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTDPRERVRKASFFNWFYFSINIG 225

Query:   189 ILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCV 248
               ++ T+LV++Q+N+GWG G  IPT  M +SI +F IG PLYR   P GSP TR+ QV V
Sbjct:   226 SFISSTLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQKPGGSPITRVCQVLV 285

Query:   249 AAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMK 288
             AA+RK KL +  D   LYE  E ++ I+   K+ HT   K
Sbjct:   286 AAYRKLKLNLPEDISFLYETREKNSMIAGSRKIQHTDGYK 325

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2041140 PTR4 "peptide transporter 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
 Identities = 112/251 (44%), Positives = 148/251 (58%)

Query:    11 NSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGT 70
             N  +K+  G     PFIF+NE CE+LA  G   N+I+Y T +LH     AA  +  + GT
Sbjct:    36 NPPLKQTTGNWKACPFIFANECCERLAYYGIAKNLITYFTNELHETNVSAARHVMTWQGT 95

Query:    71 GSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEAN 130
               +TPLIGA +ADAY GR+WTI   S IY  GM+ LT+SA +P L+P  C G  +C  A 
Sbjct:    96 CYITPLIGALIADAYWGRYWTIACFSAIYFTGMVALTLSASVPGLKPAECIGS-LCPPAT 154

Query:   131 KGQVAILYVXXXXXXXXXXXIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAIL 190
               Q  +L+            I+PCV +FGADQFD+TDP +  +   +FNW+YF +     
Sbjct:   155 MVQSTVLFSGLYLIALGTGGIKPCVSSFGADQFDKTDPSERVRKASFFNWFYFTINIGAF 214

Query:   191 VAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAA 250
             V+ TVLV+IQ+N GW  G  IPT  M L+ ++F  G PLYR   P GSP T + QV VAA
Sbjct:   215 VSSTVLVWIQENYGWELGFLIPTVFMGLATMSFFFGTPLYRFQKPRGSPITSVCQVLVAA 274

Query:   251 FRKRKLTMVTD 261
             +RK  L +  D
Sbjct:   275 YRKSNLKVPED 285

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2161428 AT5G46040 [Arabidopsis thaliana (taxid:3702)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 107/266 (40%), Positives = 156/266 (58%)

Query:    12 SHVKR-QKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGT 70
             + V+R Q G      F+   EV E++A  G ++N++ Y+TT+LH    K++N +TN+ GT
Sbjct:    21 NRVRRSQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMTTKLHQGTVKSSNNVTNWVGT 80

Query:    71 GSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQV--CQE 128
               LTP++GA+VADA+ GR+ T  I+S IY +GM  LT+S  LP L+PP C    V  C++
Sbjct:    81 SWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSVSLPGLKPPKCSTANVENCEK 140

Query:   129 ANKGQVAILYVXXXXXXXXXXXIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAA 188
             A+  Q+A+ +             +P +   GADQFDE DPK       +FNW+ F +   
Sbjct:   141 ASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFDPKDKIHKHSFFNWWMFSIFFG 200

Query:   189 ILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCV 248
                A TVLVY+QDN+GW  G G+ T  +  SI  FL+G  LYR+  P GSPFT++ +V V
Sbjct:   201 TFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGTRLYRHKLPMGSPFTKMARVIV 260

Query:   249 AAFRKRKLTMVTDPKLLYENEELDAA 274
             A+ RK +  M +D    YE   ++ A
Sbjct:   261 ASLRKAREPMSSDSTRFYELPPMEYA 286

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP

TAIR|locus:2008855 NRT1.1 "nitrate transporter 1.1" [Arabidopsis thaliana (taxid:3702)]

 Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
 Identities = 112/279 (40%), Positives = 164/279 (58%)

Query:    16 RQK-GGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLT 74
             R K GG  +   I   E  E+L  +G   N+++YLT  +H+    AANT+TNF GT  + 
Sbjct:    25 RSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANTVTNFLGTSFML 84

Query:    75 PLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEG--EQVCQEANKG 132
              L+G F+AD + GR+ TI I + I   G+  LT+S I+P LRPP C       C++A+  
Sbjct:    85 CLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPGLRPPRCNPTTSSHCEQASGI 144

Query:   133 QVAILYVXXXXXXXXXXXIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVA 192
             Q+ +LY+           ++  V  FG+DQFDET+PK+ +K   +FN ++F +    L+A
Sbjct:   145 QLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFNRFFFCINVGSLLA 204

Query:   193 VTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFR 252
             VTVLVY+QD++G  WG GI  FA+ L++  FL G   YR     GSP T++  V VAA+R
Sbjct:   205 VTVLVYVQDDVGRKWGYGICAFAIVLALSVFLAGTNRYRFKKLIGSPMTQVAAVIVAAWR 264

Query:   253 KRKLTMVTDPKLLYENEELDAAI-SLGGK--LLHTKHMK 288
              RKL +  DP  LY+ +++ AA  S+ GK  L HT+  +
Sbjct:   265 NRKLELPADPSYLYDVDDIIAAEGSMKGKQKLPHTEQFR 303

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0010167 "response to nitrate" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0015706 "nitrate transport" evidence=IMP;RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0052541 "plant-type cell wall cellulose metabolic process" evidence=RCA

GO:0052546 "cell wall pectin metabolic process" evidence=RCA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IMP

TAIR|locus:2161438 PTR3 "peptide transporter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 104/262 (39%), Positives = 154/262 (58%)

Query:    14 VKRQ-KGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGS 72
             V+R  +G      F+   EV E++A  G ++N+  Y+TT+LH    K++N +TN+ GT  
Sbjct:    23 VRRSIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMTTKLHQGTVKSSNNVTNWVGTSW 82

Query:    73 LTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQV--CQEAN 130
             LTP++GA+V DA  GR+ T  I+  IY  GM+ LT+S  +P ++PP C    V  C++A+
Sbjct:    83 LTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTIPGIKPPECSTTNVENCEKAS 142

Query:   131 KGQVAILYVXXXXXXXXXXXIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAIL 190
               Q+A+ +             +P +   GADQFD  DPK+ T+   +FNW+ F +    L
Sbjct:   143 VLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFDPKEKTQKLSFFNWWMFSIFFGTL 202

Query:   191 VAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAA 250
              A TVLVY+QDN+GW  G G+PT  + +SI  FL+G P YR+  P GSPFT++ +V VA+
Sbjct:   203 FANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGTPFYRHKLPTGSPFTKMARVIVAS 262

Query:   251 FRKRKLTMVTDPKLLYENEELD 272
             FRK    M  D    +E   L+
Sbjct:   263 FRKANAPMTHDITSFHELPSLE 284

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS;RCA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009611 "response to wounding" evidence=IEP

GO:0042538 "hyperosmotic salinity response" evidence=IMP

GO:0043201 "response to leucine" evidence=IEP

GO:0080052 "response to histidine" evidence=IEP

GO:0080053 "response to phenylalanine" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IGI

GO:0042937 "tripeptide transporter activity" evidence=IGI

GO:0042938 "dipeptide transport" evidence=IGI

GO:0042939 "tripeptide transport" evidence=IGI

TAIR|locus:2037452 AT1G52190 [Arabidopsis thaliana (taxid:3702)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 102/248 (41%), Positives = 145/248 (58%)

Query:    15 KRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLT 74
             K+ KGG+ITMPFI +NE  EK+A  G   NMI YL       + K  N L  +    + T
Sbjct:    19 KKTKGGIITMPFIIANEAFEKVASYGLLPNMIMYLIRDYRFGVAKGTNVLFMWSAASNFT 78

Query:    75 PLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQV---CQEANK 131
             PL+GAF++D+Y GRF TI+IAS+   +GM+ L ++A+LPQ++P PC+       C  +  
Sbjct:    79 PLLGAFLSDSYLGRFLTISIASLSSFLGMVLLWLTAMLPQVKPSPCDPTAAGSHCGSSTA 138

Query:   132 GQVAILYVXXXXXXXXXXXIRPCVVAFGADQFDETD-PKQATKTWKYFNWYYFVMGAAIL 190
              Q+A+LY            IRPC +AFGADQ D  + PK       +F WYY     A+L
Sbjct:   139 SQLALLYSAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYYASSAVAVL 198

Query:   191 VAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAA 250
             +A T +VYIQ+++GW  G G+P   M ++ + F++  PLY       S FT L Q  VAA
Sbjct:   199 IAFTGIVYIQEHLGWKIGFGVPAVLMLIAALLFILASPLYVTRGVTKSLFTGLAQAIVAA 258

Query:   251 FRKRKLTM 258
             ++KRKL++
Sbjct:   259 YKKRKLSL 266

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SX20	PTR18_ARATH	No assigned EC number	0.7703	0.9826	0.4748	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00030327001 SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (583 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	288
pfam00854	372	pfam00854, PTR2, POT family	2e-48
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	8e-26
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	5e-20
PRK15462	493	PRK15462, PRK15462, dipeptide/tripeptide permease	1e-07
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	5e-05
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	7e-04
TIGR00924	475	TIGR00924, yjdL_sub1_fam, amino acid/peptide trans	0.002

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score =  164 bits (418), Expect = 2e-48
 Identities = 78/198 (39%), Positives = 107/198 (54%), Gaps = 19/198 (9%)

Query: 89  FWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGS 148
           F TI + SIIY IG + LT+ AI P L P               QVA+ Y+ L L ALG+
Sbjct: 1   FKTILLGSIIYAIGHVLLTLGAIPPSLSPV--------------QVALFYIGLYLIALGT 46

Query: 149 GGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWG 208
           GGI+P V AFGADQFDET   +      +F+W+YF + A  L+A  +  Y+Q N+G+  G
Sbjct: 47  GGIKPNVSAFGADQFDETQDPR---RDGFFSWFYFSINAGSLIATIITPYLQQNVGYPLG 103

Query: 209 LGIPTFAMFLSIIAFLIGYPLYRNLDPA-GSPFTR-LLQVCVAAFRKRKLTMVTDPKLLY 266
            G+P   M L+++ FL+G   Y+   P  GSPFT  +  +  AA + RKL +  D   LY
Sbjct: 104 FGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPKDSHWLY 163

Query: 267 ENEELDAAISLGGKLLHT 284
              E     S+    +HT
Sbjct: 164 WALEKYNKRSISQTKVHT 181

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score =  106 bits (266), Expect = 8e-26
 Identities = 69/224 (30%), Positives = 114/224 (50%), Gaps = 24/224 (10%)

Query: 38  VVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASI 97
             G  T ++ YL   L      A N    F     LTPLIGA +AD++ G+F TI   S+
Sbjct: 3   YYGMKTILVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSL 62

Query: 98  IYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVA 157
           +Y +G    ++ A+ P L  P                A+  V L L ALG+GGI+PCV A
Sbjct: 63  VYVVGHALASLGAV-PSLGHPL-------------HDALSLVGLALIALGTGGIKPCVSA 108

Query: 158 FGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIG-------WGWGLG 210
           FG DQF+E   +Q +  +++F+++YF + A  L +  +   ++ ++G       +    G
Sbjct: 109 FGGDQFEE---RQLSLRFRFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPLAFG 165

Query: 211 IPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKR 254
           +P   M L++I F +G  +Y+   P G+  +++++  V A +KR
Sbjct: 166 VPGILMTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKR 209

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score = 89.3 bits (222), Expect = 5e-20
 Identities = 51/204 (25%), Positives = 87/204 (42%), Gaps = 28/204 (13%)

Query: 27  IFSNEVCEKLAVVGFNTNMISYLTTQ----LHMPLTKAANTLTNFGGTGSLTPLIGAFVA 82
           IF  E+ E+ +  G    +I YL  Q    L    T A    + +G    LTP+IG ++A
Sbjct: 26  IFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLA 85

Query: 83  DAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLL 142
           D   G   TI + +I+  IG + L IS++                         LY+ L 
Sbjct: 86  DRVLGTRRTIVLGAILMAIGHLVLAISSV--------------------SGPGGLYIGLA 125

Query: 143 LAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN 202
           L  +G+G  +P + +   + + + DP++       F  +Y  +    L+A  +   +  N
Sbjct: 126 LIIVGTGLFKPNISSLLGELYPKDDPRRDGG----FTLFYMGINIGSLIAPIITGLLAIN 181

Query: 203 IGWGWGLGIPTFAMFLSIIAFLIG 226
            GW  G G+    M + ++ FL+G
Sbjct: 182 YGWHVGFGLAAVGMIIGLVIFLLG 205

Length = 498

>gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional

 Score = 51.9 bits (124), Expect = 1e-07
 Identities = 44/201 (21%), Positives = 79/201 (39%), Gaps = 25/201 (12%)

Query: 26  FIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAY 85
           ++ + ++ E  +  G    +I YLT QL      A    + +     +TP++G F+AD  
Sbjct: 13  YVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKV 72

Query: 86  AGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAA 145
            G    + + +++  IG + L  S I P                     + LY+SL +  
Sbjct: 73  LGNRMAVMLGALLMAIGHVVLGASEIHP---------------------SFLYLSLAIIV 111

Query: 146 LGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGW 205
            G G  +  V     + ++ TDP++       F+  Y       ++A     Y Q+   W
Sbjct: 112 CGYGLFKSNVSCLLGELYEPTDPRRDGG----FSLMYAAGNVGSIIAPIACGYAQEEYSW 167

Query: 206 GWGLGIPTFAMFLSIIAFLIG 226
             G G+    M   ++ FL G
Sbjct: 168 AMGFGLAAVGMIAGLVIFLCG 188

Length = 493

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 32/187 (17%), Positives = 66/187 (35%), Gaps = 29/187 (15%)

Query: 43  TNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG 102
           +  +  L   L +  ++A   ++ F    +L  L+  +++D + GR   + +  +++ +G
Sbjct: 19  SPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALG 77

Query: 103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQ 162
            + L  ++ L  L                       V   L  LG G + P   A  A+ 
Sbjct: 78  SLLLAFASSLWLL----------------------LVGRFLLGLGGGALYPAAAALIAEW 115

Query: 163 FDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIA 222
           F   +  +A         +    G   L+   +   + +++GW W   I      L  + 
Sbjct: 116 FPPKERGRA------LGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALL 169

Query: 223 FLIGYPL 229
            L    L
Sbjct: 170 LLFLLRL 176

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 40.5 bits (95), Expect = 7e-04
 Identities = 36/217 (16%), Positives = 67/217 (30%), Gaps = 29/217 (13%)

Query: 36  LAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIA 95
           L        +  YL   L +  T+    LT F    +L   +   ++D + GR   + I 
Sbjct: 10  LGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRF-GRRRVLLIG 68

Query: 96  SIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCV 155
            +++ +G++ L  ++                       + +L V  +L  LG G + P  
Sbjct: 69  LLLFALGLLLLLFAS----------------------SLWLLLVLRVLQGLGGGALFPAA 106

Query: 156 VAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFA 215
            A  AD F   +  +A              G    +   +   +    GW     I    
Sbjct: 107 AALIADWFPPEERGRA------LGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAIL 160

Query: 216 MFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFR 252
             L+ +   +  P          P        V A++
Sbjct: 161 ALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWK 197

Length = 346

>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 32/202 (15%), Positives = 68/202 (33%), Gaps = 27/202 (13%)

Query: 27  IFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTK--AANTLTNFGGTGSLTPLIGAFVADA 84
           +F  E+ E+ +  G    +  YL  Q  +  ++  A      +     L   +G +  D 
Sbjct: 15  LFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDR 74

Query: 85  YAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLA 144
             G   T+ +  I+  +G   L +S                          +++  L   
Sbjct: 75  VWGTKKTMVLGGIVLMLGHFMLAMSIYP----------------------DLIFYGLGTI 112

Query: 145 ALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIG 204
           A+GSG  +    +     ++  D  +       F  +Y  +     ++  +   I +N G
Sbjct: 113 AVGSGLFKANPSSMVGKLYERGDMPRRDGG---FTLFYMSINIGSFISPLLAGVIAENYG 169

Query: 205 WGWGLGIPTFAMFLSIIAFLIG 226
           +  G  +    M + ++ F  G
Sbjct: 170 YHVGFNLAAVGMVIGLLTFFAG 191

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	288
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.93
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.91
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	99.91
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.89
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.88
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.87
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.84
PRK10054	395	putative transporter; Provisional	99.79
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.78
PRK03545	390	putative arabinose transporter; Provisional	99.77
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.77
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.77
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.77
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.76
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.76
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.76
PRK12382	392	putative transporter; Provisional	99.75
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.75
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.75
TIGR00900	365	2A0121 H+ Antiporter protein.	99.75
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.74
TIGR00891	405	2A0112 putative sialic acid transporter.	99.74
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.74
PRK10504	471	putative transporter; Provisional	99.74
PRK05122	399	major facilitator superfamily transporter; Provisi	99.74
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.73
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.72
PRK10091	382	MFS transport protein AraJ; Provisional	99.71
PRK12307	426	putative sialic acid transporter; Provisional	99.71
PRK11663	434	regulatory protein UhpC; Provisional	99.71
PRK10642	490	proline/glycine betaine transporter; Provisional	99.71
TIGR00895	398	2A0115 benzoate transport.	99.71
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.71
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.7
PRK11043	401	putative transporter; Provisional	99.7
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.7
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.7
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.69
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.69
TIGR00893	399	2A0114 d-galactonate transporter.	99.69
PRK09874	408	drug efflux system protein MdtG; Provisional	99.69
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.68
PRK03699	394	putative transporter; Provisional	99.68
PLN00028	476	nitrate transmembrane transporter; Provisional	99.68
PRK09705	393	cynX putative cyanate transporter; Provisional	99.68
PRK03893	496	putative sialic acid transporter; Provisional	99.67
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.67
PRK10133	438	L-fucose transporter; Provisional	99.67
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.67
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.67
PRK03633	381	putative MFS family transporter protein; Provision	99.67
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.66
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.66
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.65
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.65
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.65
PRK10489	417	enterobactin exporter EntS; Provisional	99.65
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.65
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.64
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.63
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.63
PRK15011	393	sugar efflux transporter B; Provisional	99.63
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.62
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.62
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.62
TIGR00805	633	oat sodium-independent organic anion transporter.	99.61
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.61
PRK15011	393	sugar efflux transporter B; Provisional	99.61
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.61
PRK09952	438	shikimate transporter; Provisional	99.61
PRK10642	490	proline/glycine betaine transporter; Provisional	99.6
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.59
PRK03699	394	putative transporter; Provisional	99.59
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.59
PRK09528	420	lacY galactoside permease; Reviewed	99.58
PRK09952	438	shikimate transporter; Provisional	99.58
PRK15075	434	citrate-proton symporter; Provisional	99.58
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.58
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.57
PRK05122	399	major facilitator superfamily transporter; Provisi	99.57
TIGR00898	505	2A0119 cation transport protein.	99.56
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.56
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.56
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.55
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.55
PRK09705	393	cynX putative cyanate transporter; Provisional	99.54
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.54
KOG2532	466	consensus Permease of the major facilitator superf	99.54
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.54
TIGR00901	356	2A0125 AmpG-related permease.	99.54
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.53
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.53
PRK11902	402	ampG muropeptide transporter; Reviewed	99.53
PRK03893	496	putative sialic acid transporter; Provisional	99.53
TIGR00893	399	2A0114 d-galactonate transporter.	99.52
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.52
PRK11010	491	ampG muropeptide transporter; Validated	99.51
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.51
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.51
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.5
KOG0254	513	consensus Predicted transporter (major facilitator	99.5
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.5
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	99.5
PRK03545	390	putative arabinose transporter; Provisional	99.5
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.49
PTZ00207	591	hypothetical protein; Provisional	99.49
PRK12382	392	putative transporter; Provisional	99.48
PRK09874	408	drug efflux system protein MdtG; Provisional	99.48
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.47
PRK03633	381	putative MFS family transporter protein; Provision	99.47
PRK09528	420	lacY galactoside permease; Reviewed	99.47
PLN00028	476	nitrate transmembrane transporter; Provisional	99.47
TIGR00891	405	2A0112 putative sialic acid transporter.	99.47
PRK10489	417	enterobactin exporter EntS; Provisional	99.47
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.47
PRK11663	434	regulatory protein UhpC; Provisional	99.46
PRK15075	434	citrate-proton symporter; Provisional	99.46
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.46
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.45
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.45
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.45
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.45
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.44
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.44
PRK11010	491	ampG muropeptide transporter; Validated	99.41
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.41
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.41
PRK10504	471	putative transporter; Provisional	99.4
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.4
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.39
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.39
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.39
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.38
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.38
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.37
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.36
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.36
PRK09669	444	putative symporter YagG; Provisional	99.35
TIGR00900	365	2A0121 H+ Antiporter protein.	99.34
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.34
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.34
PRK12307	426	putative sialic acid transporter; Provisional	99.33
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.32
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.32
PRK10091	382	MFS transport protein AraJ; Provisional	99.32
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.31
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.31
KOG0569	485	consensus Permease of the major facilitator superf	99.31
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.3
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.3
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.3
PRK10429	473	melibiose:sodium symporter; Provisional	99.29
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.29
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.29
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.28
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.28
PF13347	428	MFS_2: MFS/sugar transport protein	99.27
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.27
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.26
TIGR00895	398	2A0115 benzoate transport.	99.26
KOG2533	495	consensus Permease of the major facilitator superf	99.26
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.25
KOG2615	451	consensus Permease of the major facilitator superf	99.24
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.24
PRK10133	438	L-fucose transporter; Provisional	99.24
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.24
PRK11462	460	putative transporter; Provisional	99.22
PRK11902	402	ampG muropeptide transporter; Reviewed	99.22
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.22
PRK09848	448	glucuronide transporter; Provisional	99.21
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.21
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.21
PRK09848	448	glucuronide transporter; Provisional	99.2
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.2
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.2
PRK10429	473	melibiose:sodium symporter; Provisional	99.19
PRK10054	395	putative transporter; Provisional	99.18
PF13347	428	MFS_2: MFS/sugar transport protein	99.18
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.16
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.16
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.15
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.14
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.13
TIGR00901	356	2A0125 AmpG-related permease.	99.13
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.12
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.12
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.11
PRK11043	401	putative transporter; Provisional	99.09
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.09
TIGR00898	505	2A0119 cation transport protein.	99.07
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.06
COG2211	467	MelB Na+/melibiose symporter and related transport	99.04
KOG2532	466	consensus Permease of the major facilitator superf	99.03
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.0
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.0
PRK09669	444	putative symporter YagG; Provisional	99.0
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.99
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.97
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.94
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.94
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.93
COG2211	467	MelB Na+/melibiose symporter and related transport	98.92
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.91
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.91
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.9
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.89
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.87
KOG0569	485	consensus Permease of the major facilitator superf	98.83
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.78
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.75
PRK11462	460	putative transporter; Provisional	98.75
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.72
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.7
KOG2533	495	consensus Permease of the major facilitator superf	98.65
KOG3626	735	consensus Organic anion transporter [Secondary met	98.63
KOG2563	480	consensus Permease of the major facilitator superf	98.62
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.61
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.6
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.6
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.52
COG0477	338	ProP Permeases of the major facilitator superfamil	98.51
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.48
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.47
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.45
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.45
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.44
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.41
PF12832	77	MFS_1_like: MFS_1 like family	98.36
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.17
KOG0254	513	consensus Predicted transporter (major facilitator	98.14
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.11
KOG3762	618	consensus Predicted transporter [General function	98.0
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.97
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.96
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.95
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.93
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.91
KOG0637	498	consensus Sucrose transporter and related proteins	97.9
TIGR00805	633	oat sodium-independent organic anion transporter.	97.86
PTZ00207	591	hypothetical protein; Provisional	97.86
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	97.85
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	97.64
KOG2563	480	consensus Permease of the major facilitator superf	97.57
PRK03612	521	spermidine synthase; Provisional	97.56
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.51
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.47
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	97.45
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.44
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.44
KOG2615	451	consensus Permease of the major facilitator superf	97.4
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	97.18
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.84
KOG2325	488	consensus Predicted transporter/transmembrane prot	96.8
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	96.64
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.63
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	96.36
KOG3626	735	consensus Organic anion transporter [Secondary met	96.24
KOG3762	618	consensus Predicted transporter [General function	96.08
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.02
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	95.7
KOG3098	461	consensus Uncharacterized conserved protein [Funct	95.43
KOG1330	493	consensus Sugar transporter/spinster transmembrane	94.72
KOG3097	390	consensus Predicted membrane protein [Function unk	94.29
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	94.15
COG3202	509	ATP/ADP translocase [Energy production and convers	94.02
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	93.63
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	93.25
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	92.85
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	92.18
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	91.89
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	91.43
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	91.38
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	87.85
KOG0637	498	consensus Sucrose transporter and related proteins	87.49
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	87.16
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	82.71
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	80.5

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.93  E-value=1.8e-25  Score=204.28  Aligned_cols=193  Identities=27%  Similarity=0.473  Sum_probs=177.7

Q ss_pred             cccCCcchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcC----CCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHH
Q 023063           16 RQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLH----MPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWT   91 (288)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~   91 (288)
                      ...+++|.++.++.++++|+++||+....+..|++.+++    ++++++..+.+.+....++.+.++||++||++|+|++
T Consensus        15 ~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~t   94 (498)
T COG3104          15 KFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRT   94 (498)
T ss_pred             ccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence            345688999999999999999999999999999999888    9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhh
Q 023063           92 ITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQA  171 (288)
Q Consensus        92 i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~  171 (288)
                      +.+|.+++.+|.+.++.+.                    ......++++++++++|.|.+++++.++++|++|++|+   
T Consensus        95 I~lGail~~iGh~~L~~~~--------------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dp---  151 (498)
T COG3104          95 IVLGAILMAIGHLVLAISS--------------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDP---  151 (498)
T ss_pred             HHHHHHHHHHHHHHHhccc--------------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCc---
Confidence            9999999999999998652                    01456788999999999999999999999999999987   


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHHhccceee
Q 023063          172 TKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRN  232 (288)
Q Consensus       172 ~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~  232 (288)
                       ||.+.++.+|++.|+|++++|.+.+++.+++||...|...++...++++.+++++++...
T Consensus       152 -rrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~  211 (498)
T COG3104         152 -RRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKG  211 (498)
T ss_pred             -ccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcC
Confidence             699999999999999999999999999999999999999999999999999998876543

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.91  E-value=3.6e-23  Score=195.49  Aligned_cols=189  Identities=17%  Similarity=0.304  Sum_probs=165.4

Q ss_pred             cCCcchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHH
Q 023063           18 KGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASI   97 (288)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~   97 (288)
                      ++++|.++.+++.+++|++++|+...+++.|+++++|++..+++++.+.+.....+..+++|+++||++||||+++++.+
T Consensus        10 ~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~   89 (489)
T PRK10207         10 LQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAI   89 (489)
T ss_pred             hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999994499999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhH
Q 023063           98 IYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  177 (288)
Q Consensus        98 l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (288)
                      ++.++++++.++..                     ....++++++++++|.|...++..++++|++|++++    +|++.
T Consensus        90 ~~~~g~~~~~~~~~---------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~----~~~~~  144 (489)
T PRK10207         90 VLAIGYFMTGMSLL---------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDP----RLDGA  144 (489)
T ss_pred             HHHHHHHHHHHhcc---------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCch----hhhcc
Confidence            99999998887541                     123456788999999999999999999999988753    46788


Q ss_pred             HHHHHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHHhcccee
Q 023063          178 FNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYR  231 (288)
Q Consensus       178 ~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~  231 (288)
                      +++++++.|+|..++|.+++++.++.||++.|++..+..+++++.+...++.++
T Consensus       145 ~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~  198 (489)
T PRK10207        145 FTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVK  198 (489)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhc
Confidence            999999999999999999999999999999999987766666666666554443

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=99.91  E-value=1.1e-22  Score=193.56  Aligned_cols=248  Identities=51%  Similarity=0.885  Sum_probs=227.9

Q ss_pred             ccCCcchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHH
Q 023063           17 QKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIAS   96 (288)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~   96 (288)
                      ..+.|+....++..+.+++.++|++..++..|+++.++.+...+...++.+.......++++++++|.++||.+++.++.
T Consensus        32 ~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s  111 (571)
T KOG1237|consen   32 KTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGS  111 (571)
T ss_pred             eechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCC---CCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhh
Q 023063           97 IIYQIGMICLTISAILPQLRPPPC---EGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATK  173 (288)
Q Consensus        97 ~l~~i~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  173 (288)
                      +++.+|..++.+...+|.+....|   ...+.|..++......++.++.+.++|.|+..+++.++.+||+++.++.+++.
T Consensus       112 ~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~  191 (571)
T KOG1237|consen  112 LISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKG  191 (571)
T ss_pred             HHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhC
Confidence            999999999999988999988887   23457888888888999999999999999999999999999999776666667


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHHhccceeecCCCCChhhHHHHHHHHHHHh
Q 023063          174 TWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRK  253 (288)
Q Consensus       174 ~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (288)
                      ....++|+++..++|..++..+..+++++.||.+.|.++.+...++++++....+.++.+++.++|...+.+++..+.++
T Consensus       192 ~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k  271 (571)
T KOG1237|consen  192 IPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFK  271 (571)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999988889999999999999999999


Q ss_pred             CccccCCCCcc
Q 023063          254 RKLTMVTDPKL  264 (288)
Q Consensus       254 ~~~~~~~~~~~  264 (288)
                      |+.+.+.++++
T Consensus       272 ~~~~~~~~~~~  282 (571)
T KOG1237|consen  272 RKAVVSLDPEE  282 (571)
T ss_pred             HhccCCCcchh
Confidence            88766655433

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.89  E-value=9.5e-22  Score=185.38  Aligned_cols=189  Identities=19%  Similarity=0.310  Sum_probs=165.2

Q ss_pred             cCCcchHHHHHHHHHHHHHhHHhhhhhHHHHhHHh--cCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHH
Q 023063           18 KGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQ--LHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIA   95 (288)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~   95 (288)
                      .++++.++.+++.++++++++|++.++++.|++++  +|++..+++.+.+.+.+...++.+++|+++||++|||+++.++
T Consensus         6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~   85 (475)
T TIGR00924         6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG   85 (475)
T ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence            34667888999999999999999999999999887  9999999999999999999999999999999944999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhh
Q 023063           96 SIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTW  175 (288)
Q Consensus        96 ~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (288)
                      .+++.++.+++.++.                      +.+.+++++++.++|.|...++..++++|++|+++++   +|+
T Consensus        86 ~~~~~~g~~~~~~~~----------------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~---~r~  140 (475)
T TIGR00924        86 GIVLMLGHFMLAMSI----------------------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP---RRD  140 (475)
T ss_pred             HHHHHHHHHHHHhcc----------------------cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc---ccc
Confidence            999999998887654                      4566778888999999999999999999999876421   588


Q ss_pred             hHHHHHHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHHhcccee
Q 023063          176 KYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYR  231 (288)
Q Consensus       176 ~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~  231 (288)
                      +++++++++.++|..++|.+++++.+++||+..|.+.++..+++.+.+...++.++
T Consensus       141 ~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~  196 (475)
T TIGR00924       141 GGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLR  196 (475)
T ss_pred             ceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccc
Confidence            89999999999999999999999999899999999888766666666666555443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.88  E-value=2.3e-21  Score=181.93  Aligned_cols=186  Identities=23%  Similarity=0.416  Sum_probs=159.5

Q ss_pred             CcchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHH
Q 023063           20 GMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIY   99 (288)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~   99 (288)
                      +++.++.+++.++++++++|++..+++.|+++.+|+++.+++.+.+.+.....++++++|+++||++||||++.++.++.
T Consensus         7 ~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~   86 (493)
T PRK15462          7 QPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLM   86 (493)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHH
Confidence            67889999999999999999999999999999999999999999999999999999999999999879999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHH
Q 023063          100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (288)
Q Consensus       100 ~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (288)
                      .++.+++....                     .....++++..+..+|.|...++..++++|++|++++    +|.+.++
T Consensus        87 ~lg~lll~~~~---------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~----~R~sgf~  141 (493)
T PRK15462         87 AIGHVVLGASE---------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDP----RRDGGFS  141 (493)
T ss_pred             HHHHHHHHHhh---------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCc----cccceeh
Confidence            99887665322                     0122344555566788888889899999999998643    6899999


Q ss_pred             HHHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHHhccce
Q 023063          180 WYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLY  230 (288)
Q Consensus       180 ~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~~~~~  230 (288)
                      ++|...++|+.++|.+.+++.+.+||+..|.+.++..+++++.+...++.+
T Consensus       142 i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l  192 (493)
T PRK15462        142 LMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHF  192 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            999999999999999999999999999999988777777777766655544

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.87  E-value=1.1e-20  Score=179.17  Aligned_cols=186  Identities=19%  Similarity=0.357  Sum_probs=157.5

Q ss_pred             cCCcchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHH
Q 023063           18 KGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASI   97 (288)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~   97 (288)
                      .++++.++.+++.++++++++|++..+++.|+++++|++..+++...+.+........+++|+++||++|||++++++.+
T Consensus        17 ~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~   96 (500)
T PRK09584         17 FKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAI   96 (500)
T ss_pred             hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            35667899999999999999999999999999999999999998888887777777778999999994499999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhH
Q 023063           98 IYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  177 (288)
Q Consensus        98 l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (288)
                      +..++.+++.++.                     ...+.++++++++++|.|...++..++++|++|++++    ++++.
T Consensus        97 ~~~ig~~l~~~~~---------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~----~~~~~  151 (500)
T PRK09584         97 VLAIGYALVAWSG---------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDP----RLDGA  151 (500)
T ss_pred             HHHHHHHHHHHhc---------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCch----hhhhc
Confidence            9999988777643                     1345566778889999999999999999999987642    46678


Q ss_pred             HHHHHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHHhcc
Q 023063          178 FNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYP  228 (288)
Q Consensus       178 ~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~~~  228 (288)
                      +++++++.++|+.++|.+++++.+++||+..|.+.++...++++.+....+
T Consensus       152 ~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~  202 (500)
T PRK09584        152 FTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQR  202 (500)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            899999999999999999999999999999999887766666655555443

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.84  E-value=2.7e-19  Score=173.20  Aligned_cols=204  Identities=31%  Similarity=0.601  Sum_probs=174.0

Q ss_pred             HhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 023063           36 LAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQL  115 (288)
Q Consensus        36 ~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~  115 (288)
                      ++||++...+..|+++.+|++.+.+..+...+.....+.+.++|+++|+++||++++.++.+++.+|.+++++.. .|..
T Consensus         1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a-~~~~   79 (654)
T TIGR00926         1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGA-IPSS   79 (654)
T ss_pred             CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc-Cccc
Confidence            468999999999999999999999999999999999999999999999999999999999999999998888755 2211


Q ss_pred             CCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHh
Q 023063          116 RPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTV  195 (288)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~  195 (288)
                      .             ........++++.+.++|.|++.++..++.+|++++++   ++++.++++++++++|+|+++++++
T Consensus        80 ~-------------~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~---~~~~~s~F~~fY~~iNiGSlis~~i  143 (654)
T TIGR00926        80 G-------------HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQ---LSLRSRFFSFFYFAINAGSLISTII  143 (654)
T ss_pred             c-------------cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccc---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1             01133456788889999999999999999999998653   2268899999999999999999999


Q ss_pred             Hhheeecc-------chhhhhhHhHHHHHHHHHHHHHhccceeecCCCCChhhHHHHHHHHHHHhCcc
Q 023063          196 LVYIQDNI-------GWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKRKL  256 (288)
Q Consensus       196 ~~~l~~~~-------g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (288)
                      .+++.+.+       +|..+|.+++++.+++++++...++++++.++.+++..+..+++..++++|..
T Consensus       144 ~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~  211 (654)
T TIGR00926       144 TPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFS  211 (654)
T ss_pred             HHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhc
Confidence            99887443       69999999999999999999888888877778888888888888887776543

>PRK10054 putative transporter; Provisional

Probab=99.79  E-value=1e-17  Score=154.49  Aligned_cols=175  Identities=13%  Similarity=0.137  Sum_probs=148.1

Q ss_pred             cchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHH
Q 023063           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ  100 (288)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~  100 (288)
                      +|..+.++...++...+++...++++.|+++++|++..+++++.+.+.+...++.++.|+++||+ |||++++++.++..
T Consensus         6 ~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~~~   84 (395)
T PRK10054          6 RRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITAFA   84 (395)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHHHH
Confidence            45677777888889999999999999999999999999999999999999999999999999998 99999999998888


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 023063          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (288)
Q Consensus       101 i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (288)
                      ++.++..+..                      +.+.+++.+.+.+.+.+...+...++.+|.++++      +|++.+++
T Consensus        85 ~~~~~~~~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~g~  136 (395)
T PRK10054         85 SGFIAIPLVN----------------------NVTLVVLFFALINCAYSVFSTVLKAWFADNLSST------SKTKIFSL  136 (395)
T ss_pred             HHHHHHHHHh----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHh------HHHHHHHH
Confidence            8887776655                      5566666677777777777778888899999876      69999999


Q ss_pred             HHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHH
Q 023063          181 YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (288)
Q Consensus       181 ~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~  225 (288)
                      .+...++|..++|.+++++.+ .+|+..|.+.+++.++..+....
T Consensus       137 ~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~  180 (395)
T PRK10054        137 NYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQI  180 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998764 68999998877766665544333

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.78  E-value=2.8e-17  Score=151.45  Aligned_cols=175  Identities=11%  Similarity=0.127  Sum_probs=147.5

Q ss_pred             cccCCcchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHH
Q 023063           16 RQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIA   95 (288)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~   95 (288)
                      ..+..|+.+..+....++.....|.....+|.+ .+++|+++.+.++..+...++..++.++.|+++||+ |||+.++.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~~   91 (394)
T PRK10213         14 ITRPNWSAVFSVAFCVACLIIVEFLPVSLLTPM-AQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVILF   91 (394)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHHH
Confidence            334466666666656555555655555556554 568999999999999999999999999999999998 999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhh
Q 023063           96 SIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTW  175 (288)
Q Consensus        96 ~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (288)
                      .++..++.+++....                      +.+.+++.|++.|++.+...+...+++.|.+|++      +|+
T Consensus        92 ~~~~~~~~~~~~~~~----------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~------~~~  143 (394)
T PRK10213         92 AVLLTLSCLLVSFAN----------------------SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPR------TVP  143 (394)
T ss_pred             HHHHHHHHHHHHHHC----------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHh------HHH
Confidence            999999888877655                      7888999999999999999999999999999887      699


Q ss_pred             hHHHHHHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHH
Q 023063          176 KYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSI  220 (288)
Q Consensus       176 ~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~  220 (288)
                      ++.+....+.++|..++|.+++++.+.+||+..|++.+++.++..
T Consensus       144 ~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~  188 (394)
T PRK10213        144 KALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCI  188 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998999999988766554443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.77  E-value=2.5e-17  Score=151.31  Aligned_cols=175  Identities=9%  Similarity=0.044  Sum_probs=143.7

Q ss_pred             cchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHH
Q 023063           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ  100 (288)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~  100 (288)
                      |..++.+.+..+......+.....+ ..+.+++|.++.+.++..+.+.++..++.++.|+++||+ |||+.+..+..++.
T Consensus         8 ~~~~~~l~~~~~~~~~~~~~~~~~~-~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~   85 (390)
T PRK03545          8 WLRVVTLALAAFIFNTTEFVPVGLL-SDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVLFI   85 (390)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHcch-HHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHH
Confidence            4345555555555444444333334 456678999999999999999999999999999999998 99999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 023063          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (288)
Q Consensus       101 i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (288)
                      ++.+.+..+.                      +++.+.+.|++.|++.+...+...+++.|.+|++      +|++.+++
T Consensus        86 ~~~~~~~~~~----------------------~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~g~  137 (390)
T PRK03545         86 ASHVLSALAW----------------------NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAG------KKAQALSL  137 (390)
T ss_pred             HHHHHHHHhc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChh------hhhhHHHH
Confidence            9988888766                      6788889999999999888888889999999987      69999999


Q ss_pred             HHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHH
Q 023063          181 YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (288)
Q Consensus       181 ~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~  225 (288)
                      +..+.++|..++|.+++.+.+.+||++.|++.+++.++..+....
T Consensus       138 ~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~  182 (390)
T PRK03545        138 LATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIK  182 (390)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999888899999998887766555444333

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.77  E-value=1.4e-18  Score=157.54  Aligned_cols=204  Identities=13%  Similarity=0.163  Sum_probs=166.5

Q ss_pred             cchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHH
Q 023063           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ  100 (288)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~  100 (288)
                      ++.+..+..+..++++--|.+-. ...=.++.+|.+++..+++.+++.+...++.|++|+++||| .|++++.+|..+..
T Consensus        32 ~~~l~il~~vnlmny~Dr~~iag-v~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~iW~  109 (493)
T KOG1330|consen   32 TLTLVILCLVNLMNYADRYTIAG-VLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIFIWT  109 (493)
T ss_pred             hHHHHHHHHHHHHHHhhhhhhhh-hhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHHHHH
Confidence            34455555667777777666654 33345667999999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 023063          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (288)
Q Consensus       101 i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (288)
                      +++++..++.                      .+|++.+.|.+.|+|.+...+..+++++|.||..      +|++.+++
T Consensus       110 ~Av~~~~fs~----------------------~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~------~Rs~~~~i  161 (493)
T KOG1330|consen  110 LAVFASGFSN----------------------HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDD------KRSRVLGI  161 (493)
T ss_pred             HHHHHHHHHH----------------------HHHHHHHHHHHhccchhhhcccchhHhhhcCcch------hhhHHHHH
Confidence            9999999887                      8899999999999999999999999999999998      79999999


Q ss_pred             HHHHHHHHHHHHHHhHhheeeccc-hhhhhhHhHHHHHHHHHHHHHhccc-eeec--CCC-----CChhhHHHHHHHHHH
Q 023063          181 YYFVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLSIIAFLIGYPL-YRNL--DPA-----GSPFTRLLQVCVAAF  251 (288)
Q Consensus       181 ~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~i~~~~~~~~-~~~~--~~~-----~~~~~~~~~~~~~~~  251 (288)
                      +|++.++|+.+|.+++..+....+ ||++|.+.+++.++..++..+..++ .++.  +.+     ..+.++..|.++...
T Consensus       162 fy~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~~~~~ts~~kDl~~l~  241 (493)
T KOG1330|consen  162 FYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKMVKPFTSVWKDLKVLA  241 (493)
T ss_pred             hhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCcCCCCccchHHHHHHHH
Confidence            999999999999999999988877 9999999988887766655444432 2211  111     134666667766666


Q ss_pred             HhC
Q 023063          252 RKR  254 (288)
Q Consensus       252 ~~~  254 (288)
                      |++
T Consensus       242 ~~~  244 (493)
T KOG1330|consen  242 KIK  244 (493)
T ss_pred             ccC
Confidence            644

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.77  E-value=5.2e-17  Score=147.02  Aligned_cols=183  Identities=12%  Similarity=0.100  Sum_probs=165.8

Q ss_pred             cccCCcchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHH
Q 023063           16 RQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIA   95 (288)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~   95 (288)
                      +++..|..++.+.+..|.....=+.....+| -+.+++|.+..++|+.++.|..+..++.|+-..+.||+ .||+.++..
T Consensus         7 ~~~~~~~~l~aLa~~~F~igttEfv~~gLLp-~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~   84 (394)
T COG2814           7 ARKPMWLALLALALAAFAIGTTEFVPVGLLP-PIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGL   84 (394)
T ss_pred             ccccchHHHHHHHHHHHHHHhHHHHHHhchH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHH
Confidence            3455677888888888888777776666554 55678999999999999999999999999999999998 999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhh
Q 023063           96 SIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTW  175 (288)
Q Consensus        96 ~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (288)
                      +.+++++.++.+++.                      +++.+.++|++.|+..|.+++...++.++..|++      +|+
T Consensus        85 l~lFi~~n~l~alAp----------------------~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~------~~~  136 (394)
T COG2814          85 LALFIVSNLLSALAP----------------------SFAVLLLARALAGLAHGVFWSIAAALAARLVPPG------KRG  136 (394)
T ss_pred             HHHHHHHHHHHHHhc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc------chh
Confidence            999999999999988                      8999999999999999999999999999999998      799


Q ss_pred             hHHHHHHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHHhcc
Q 023063          176 KYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYP  228 (288)
Q Consensus       176 ~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~~~  228 (288)
                      ++.+....+..++..+|..++.++.+.+|||..|+..+++.++.++..+...|
T Consensus       137 ~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         137 RALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             hHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999988888877777666

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.77  E-value=4.5e-17  Score=150.96  Aligned_cols=179  Identities=13%  Similarity=0.115  Sum_probs=145.9

Q ss_pred             CcchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHH
Q 023063           20 GMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIY   99 (288)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~   99 (288)
                      +|+..+.+.+..++.......+ .+....+++++|++..+.+++.+.+.++..+++++.|+++||+ |||+++..++++.
T Consensus         6 ~~~~~~~~~~~~~~~~~d~~~~-~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~   83 (412)
T TIGR02332         6 FRRLIIFLFILFIFSFLDRINI-GFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVLW   83 (412)
T ss_pred             hhHHHHHHHHHHHHHHhhhhhH-HHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHHH
Confidence            4555555555445444444444 3344588899999999999999999999999999999999998 9999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHH
Q 023063          100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (288)
Q Consensus       100 ~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (288)
                      .++.+++.++.                      +.+.+++.|++.|++.+...+....++.|.+|++      +|++..+
T Consensus        84 ~~~~~~~~~~~----------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~rg~~~~  135 (412)
T TIGR02332        84 GIASTATMFAT----------------------GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAY------FRARANA  135 (412)
T ss_pred             HHHHHHHHHhc----------------------CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHH------HHHHHHH
Confidence            99999888766                      6778889999999999999888888999999987      6999999


Q ss_pred             HHHHHHHHHHHHHHHhHhheee------ccchhhhhhHhHHHHHHHHHHHHHhcc
Q 023063          180 WYYFVMGAAILVAVTVLVYIQD------NIGWGWGLGIPTFAMFLSIIAFLIGYP  228 (288)
Q Consensus       180 ~~~~~~~~g~~i~~~~~~~l~~------~~g~~~~f~~~~~~~~~~~i~~~~~~~  228 (288)
                      +++.+..+|..+++.+++++.+      ..|||+.|.+.++..++..+..++..+
T Consensus       136 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~  190 (412)
T TIGR02332       136 LFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLD  190 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccC
Confidence            9999999999999999887653      469999999877766555444444433

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.76  E-value=2.8e-17  Score=147.46  Aligned_cols=168  Identities=17%  Similarity=0.312  Sum_probs=142.7

Q ss_pred             HHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH
Q 023063           29 SNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTI  108 (288)
Q Consensus        29 ~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~  108 (288)
                      +..++..+........++.++.+++|.+..+.+++.+.+.+...++.++.|+++||+ |||+++..+.++..++.+...+
T Consensus         3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~   81 (352)
T PF07690_consen    3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLAF   81 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhhh
Confidence            445555666666666666688889999999999999999999999999999999998 9999999999999998555554


Q ss_pred             HhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHH
Q 023063          109 SAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAA  188 (288)
Q Consensus       109 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  188 (288)
                      +.                      +.+.+++.+++.|++.+...+...+++.|.+|++      +|++.++..+.+.++|
T Consensus        82 ~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~g  133 (352)
T PF07690_consen   82 AS----------------------NFWLLLIARFLLGIGSGFFSPASNALIADWFPPE------ERGRAFGILSAGFSLG  133 (352)
T ss_dssp             HC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTC------CHHHHHHHHHHHHHHH
T ss_pred             hh----------------------hHHHHhhhccccccccccccccccccccccchhh------hhhhccccccchhhhh
Confidence            33                      4558889999999999999999999999999997      6999999999999999


Q ss_pred             HHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHH
Q 023063          189 ILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (288)
Q Consensus       189 ~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~  225 (288)
                      ..++|.+++++.+..+|+..|++.+++.++..+....
T Consensus       134 ~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~  170 (352)
T PF07690_consen  134 SILGPLLGGFLISYFGWRWAFLISAILSLIAAILFIL  170 (352)
T ss_dssp             HHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHC
T ss_pred             hhcccchhhhhhhccccccccccccchhhhhhhhHhh
Confidence            9999999999998899999999988888777664333

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.76  E-value=6.6e-17  Score=149.91  Aligned_cols=151  Identities=11%  Similarity=0.154  Sum_probs=130.2

Q ss_pred             hHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccc
Q 023063           49 LTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQE  128 (288)
Q Consensus        49 l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~  128 (288)
                      +.+++|.+..+.++..+++.++..++++++|+++||+ |||++++.+..+..++.+.+..+.                  
T Consensus        42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~------------------  102 (413)
T PRK15403         42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFTT------------------  102 (413)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHcC------------------
Confidence            5678999999999999999999999999999999998 999999999999999888887765                  


Q ss_pred             cccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhheeeccchhhh
Q 023063          129 ANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWG  208 (288)
Q Consensus       129 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~  208 (288)
                          +.+.++++|+++|++.+...+...+++.|.++++      ++++.+++.+.+.++|..++|.+++.+.+..||++.
T Consensus       103 ----~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~  172 (413)
T PRK15403        103 ----SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQT------KGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVL  172 (413)
T ss_pred             ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence                6788899999999998876666678889999887      688999999999999999999999988888899999


Q ss_pred             hhHhHHHHHHHHHHHHHhcc
Q 023063          209 LGIPTFAMFLSIIAFLIGYP  228 (288)
Q Consensus       209 f~~~~~~~~~~~i~~~~~~~  228 (288)
                      |++.++..+++.+..+...+
T Consensus       173 f~~~~~~~~i~~~~~~~~lp  192 (413)
T PRK15403        173 FAIIAVMGLIAFVGLLLAMP  192 (413)
T ss_pred             HHHHHHHHHHHHHHHHHhCC
Confidence            98887766666554443333

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.76  E-value=1e-16  Score=145.95  Aligned_cols=177  Identities=17%  Similarity=0.151  Sum_probs=144.8

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i  101 (288)
                      +.++.+....+....+.....+.+| ++.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+.+..+.++..+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~   82 (385)
T TIGR00710         5 AFALLLGCLSILGPLGIDMYLPAFP-EIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIFAL   82 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHHH
Confidence            3444444444445555555555555 45678999999999999999999999999999999998 999999999999888


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 023063          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (288)
Q Consensus       102 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (288)
                      +.+++....                      +.+.+.+.+++.|++.+...+...+++.|.+|++      +|++.++..
T Consensus        83 ~~~~~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  134 (385)
T TIGR00710        83 SSLGLALSN----------------------NIETLLVLRFVQAFGASAGSVISQALVRDIYPGE------ELSRIYSIL  134 (385)
T ss_pred             HHHHHHHHc----------------------cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcH------HHHHHHHHH
Confidence            888877655                      6777888899999999999999999999999977      699999999


Q ss_pred             HHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHHhcc
Q 023063          182 YFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYP  228 (288)
Q Consensus       182 ~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~~~  228 (288)
                      +....+|..+++.+++++.+..+|+..|++.++..++..+......+
T Consensus       135 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (385)
T TIGR00710       135 MPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILP  181 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999999999999888889999998877766655554444333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK12382 putative transporter; Provisional

Probab=99.75  E-value=1.1e-16  Score=146.94  Aligned_cols=172  Identities=15%  Similarity=0.103  Sum_probs=137.9

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i  101 (288)
                      +.++.+.+..++...+.....+.+|.|+.+++|.+..+.+++.+.+.+...+++++.|+++||+ ||||.++.+.++..+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~   93 (392)
T PRK12382         15 FSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACGL   93 (392)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHHH
Confidence            3455555566666666666778888899999999999999999999999999999999999998 999999999887777


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 023063          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (288)
Q Consensus       102 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (288)
                      +.+........+..              ...+.+.+++.+++.|++.+...+...+++.|.+|++      +|+++++++
T Consensus        94 ~~~~~~~~~~~~~~--------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~a~~~~  153 (392)
T PRK12382         94 AGLAYLLAAILPVS--------------APFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPK------HSGKVMSWN  153 (392)
T ss_pred             HHHHHHhhhccccc--------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcc------ccchhhhHH
Confidence            65544332211110              0125677889999999999988888888899999877      699999999


Q ss_pred             HHHHHHHHHHHHHhHhheeeccchhhhhhHhHH
Q 023063          182 YFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTF  214 (288)
Q Consensus       182 ~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~  214 (288)
                      ..+.++|..++|.+++++.+.+||+..+.+..+
T Consensus       154 ~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~  186 (392)
T PRK12382        154 GMAMYGALAAGAPLGLLLHSHFGFAALALTTMV  186 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccChHHHHHHHHH
Confidence            999999999999999988888899876655443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.75  E-value=7.9e-17  Score=147.22  Aligned_cols=156  Identities=15%  Similarity=0.074  Sum_probs=122.8

Q ss_pred             hhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 023063           43 TNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEG  122 (288)
Q Consensus        43 ~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~  122 (288)
                      ......+++++|+++.+.+++.+.+.+++.++.++.|+++||+ |||+++..+......+.+ .....            
T Consensus        11 ~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~-~~~~~------------   76 (368)
T TIGR00903        11 SPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAG-RLLDP------------   76 (368)
T ss_pred             HhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHH-HHHHh------------
Confidence            3344556678999999999999999999999999999999998 999887655544444332 22221            


Q ss_pred             cccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhheeec
Q 023063          123 EQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN  202 (288)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~  202 (288)
                               .+...+.+.|++.|+|.+. .....+..+|.+|++      +|+++.++.+.+..+|..+++.+++++.+.
T Consensus        77 ---------~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~------~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~  140 (368)
T TIGR00903        77 ---------FNYEWLLACQLLAALGQPF-LLNAFAPAASQIREE------RRDLVISLLSFAMYLGIIFALAAGLKIYTA  140 (368)
T ss_pred             ---------ccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                     1577899999999999986 445556669999976      799999999999999999999999999888


Q ss_pred             cchhhhhhHhHHHHHHHHHHHHHhcc
Q 023063          203 IGWGWGLGIPTFAMFLSIIAFLIGYP  228 (288)
Q Consensus       203 ~g~~~~f~~~~~~~~~~~i~~~~~~~  228 (288)
                      +|||..|.+.+++.++..+..+...+
T Consensus       141 ~gWr~~f~~~~~l~~~~~~~~~~~lp  166 (368)
T TIGR00903       141 GGLQLLIIPIAAVAAAGIILVLAALP  166 (368)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999998877766555554444434

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.75  E-value=1.4e-16  Score=147.05  Aligned_cols=171  Identities=13%  Similarity=0.116  Sum_probs=149.0

Q ss_pred             HHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Q 023063           25 PFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMI  104 (288)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~  104 (288)
                      +.++...++...+++.+.+.++.|+++++|++..+.+++.+...+...+..+++|+++||+ |||+++..+..+..++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~   91 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFA   91 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHH
Confidence            4566788888899999999999999999999999999999999999999999999999998 999999999999999888


Q ss_pred             HHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHH
Q 023063          105 CLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV  184 (288)
Q Consensus       105 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (288)
                      .+....                      +.+.+++.+++.|++.+...+...+++.|.+|++      +|+++.++.+..
T Consensus        92 ~~~~~~----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~a~~~~~~~  143 (400)
T PRK11646         92 TMAIAH----------------------EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPH------QRGRFFSLLMMQ  143 (400)
T ss_pred             HHHHhc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHH
Confidence            877654                      5677888899999998888888889999999876      699999999999


Q ss_pred             HHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHH
Q 023063          185 MGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (288)
Q Consensus       185 ~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~  225 (288)
                      .++|..++|.+++++. ..||+..|++.++..++..+....
T Consensus       144 ~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~  183 (400)
T PRK11646        144 DSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAW  183 (400)
T ss_pred             HHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999888 679999998877665555444333

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.75  E-value=1.3e-16  Score=143.72  Aligned_cols=174  Identities=14%  Similarity=0.070  Sum_probs=142.3

Q ss_pred             HHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHH
Q 023063           28 FSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLT  107 (288)
Q Consensus        28 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~  107 (288)
                      +...++..++.......+|.|.. +++.+..+.+++.+...+...++.++.|+++||+ |||++++.+.++..++.++..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~~   82 (365)
T TIGR00900         5 FAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAVLP   82 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHHHH
Confidence            34555555655556666777776 5799999999999999999999999999999998 999999999888888777766


Q ss_pred             HHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHH
Q 023063          108 ISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGA  187 (288)
Q Consensus       108 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (288)
                      .....+                 ..+.+.+++.+++.|++.+...+...++++|.+|++      +|++..++.+.+.++
T Consensus        83 ~~~~~~-----------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~  139 (365)
T TIGR00900        83 FVALLG-----------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEE------QLTQANSLSQAVRSL  139 (365)
T ss_pred             HHHHcC-----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH------HHHHHHhHHHHHHHH
Confidence            544111                 125677888899999999999999999999999987      799999999999999


Q ss_pred             HHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHHh
Q 023063          188 AILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIG  226 (288)
Q Consensus       188 g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~  226 (288)
                      |..++|.+++++.+..||+..|++.++..++..+.....
T Consensus       140 g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  178 (365)
T TIGR00900       140 FYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSV  178 (365)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999888899999988776655554444433

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.74  E-value=2.3e-16  Score=145.59  Aligned_cols=160  Identities=13%  Similarity=0.096  Sum_probs=131.9

Q ss_pred             hHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 023063           37 AVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLR  116 (288)
Q Consensus        37 ~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~  116 (288)
                      ....+.+.++. +.+++|.+..+.++..+.+.++..++.++.|+++||+ |||+.++++..+..++.++.....      
T Consensus        28 ~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~------   99 (406)
T PRK15402         28 ANDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAFFILTCLAILLAQ------   99 (406)
T ss_pred             hhhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHc------
Confidence            33444444444 4578999999999999999999999999999999998 999999999988888888777655      


Q ss_pred             CCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhH
Q 023063          117 PPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVL  196 (288)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~  196 (288)
                                      +.+.+++.+++.|++.+...+...+++.|.+|++      +|.+..+..+....+|..++|.++
T Consensus       100 ----------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~i~  157 (406)
T PRK15402        100 ----------------SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEA------DAIKITALMANVALLAPLLGPLVG  157 (406)
T ss_pred             ----------------cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChh------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            5677888899999999888888889999999887      577888888888888999999999


Q ss_pred             hheeeccchhhhhhHhHHHHHHHHHHHHHh
Q 023063          197 VYIQDNIGWGWGLGIPTFAMFLSIIAFLIG  226 (288)
Q Consensus       197 ~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~  226 (288)
                      +++.++.+|+..|++.++..++..+.....
T Consensus       158 ~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~  187 (406)
T PRK15402        158 AALIHVLPWRGMFVLFAALAALSFFGLWRA  187 (406)
T ss_pred             HHHHHccCccHHHHHHHHHHHHHHHHHHHh
Confidence            988888899999988777666655544333

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.74  E-value=2.1e-16  Score=144.61  Aligned_cols=172  Identities=12%  Similarity=0.165  Sum_probs=144.7

Q ss_pred             cCCcchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHH
Q 023063           18 KGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASI   97 (288)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~   97 (288)
                      +.+|+.+..+.+..+...+..+......+ .+++++|++..+.+++.+.+.++..++.++.|+++||+ |||++++++.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~   85 (405)
T TIGR00891         8 RAQWNAFSAAWLGWLLDAFDFFLVALVLA-EVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTSIV   85 (405)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHH
Confidence            45666666667777777777766655454 56778999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhH
Q 023063           98 IYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  177 (288)
Q Consensus        98 l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (288)
                      +..++.+++.+..                      +++.+++.+++.|++.+...+...+++.|.+|++      +|++.
T Consensus        86 ~~~~~~~~~~~~~----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~~~~~  137 (405)
T TIGR00891        86 LFSAGTLACGFAP----------------------GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKH------LRNKA  137 (405)
T ss_pred             HHHHHHHHHHHhc----------------------cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChh------hhhHH
Confidence            8888888877655                      6777888999999999999999999999999987      69999


Q ss_pred             HHHHHHHHHHHHHHHHHhHhheeeccc--hhhhhhHhHHHHHHH
Q 023063          178 FNWYYFVMGAAILVAVTVLVYIQDNIG--WGWGLGIPTFAMFLS  219 (288)
Q Consensus       178 ~~~~~~~~~~g~~i~~~~~~~l~~~~g--~~~~f~~~~~~~~~~  219 (288)
                      .++.+.+..+|..+++.+.+.+.+..+  |+..|.+.++..++.
T Consensus       138 ~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~  181 (405)
T TIGR00891       138 SGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA  181 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence            999999999999999999888777665  998887655444333

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.74  E-value=2e-16  Score=149.94  Aligned_cols=178  Identities=12%  Similarity=0.061  Sum_probs=144.9

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i  101 (288)
                      ..+..+.+..++...-...+...+|.. .+++|.+..+.+++.+.+.++..++.+++|+++||+ |||++++.+..++.+
T Consensus         6 ~~~~~~~~~~~~~~ld~tiv~~a~p~i-~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~~~   83 (495)
T PRK14995          6 LTLVIIVLVYIPVAIDATVLHVAAPTL-SMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLFGL   83 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHH
Confidence            344444455555555544454555555 568999999999999999999999999999999998 999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 023063          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (288)
Q Consensus       102 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (288)
                      +.+.+..+.                      +.+.++++|+++|+|.+...+.....+.+.+++++     +|+++++++
T Consensus        84 ~~~~~~~a~----------------------~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~-----~r~~~~g~~  136 (495)
T PRK14995         84 ASLAAAFSP----------------------TASWLIATRALLAIGAAMIVPATLAGIRATFTEEK-----QRNMALGVW  136 (495)
T ss_pred             HHHHHHHcC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHH
Confidence            999988766                      78889999999999999888877777777775432     799999999


Q ss_pred             HHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHHhcc
Q 023063          182 YFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYP  228 (288)
Q Consensus       182 ~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~~~  228 (288)
                      ....++|..++|.+++++.++.|||+.|++...+.++.++......+
T Consensus       137 ~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~  183 (495)
T PRK14995        137 AAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVP  183 (495)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999998877666555554444444

>PRK10504 putative transporter; Provisional

Probab=99.74  E-value=3.3e-16  Score=147.24  Aligned_cols=178  Identities=13%  Similarity=0.110  Sum_probs=150.3

Q ss_pred             cchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHH
Q 023063           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ  100 (288)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~  100 (288)
                      .+.++.+.+..++..+..+.+...+|.|.+ ++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++.+..+..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~   86 (471)
T PRK10504          9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFT   86 (471)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence            345677777778888888888888888775 6999999999999999999999999999999998 99999999988888


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 023063          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (288)
Q Consensus       101 i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (288)
                      ++.+.+.+..                      +.+.+++.+++.|++.+...+...+++.|.+|++      +|++..+.
T Consensus        87 ~~~~~~~~~~----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~  138 (471)
T PRK10504         87 LGSLFCALSG----------------------TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPRE------QYMAAMTF  138 (471)
T ss_pred             HHHHHHHHhC----------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHH------HHHHHHHH
Confidence            8887766544                      5677888899999999999999999999999876      68999999


Q ss_pred             HHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHHhcc
Q 023063          181 YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYP  228 (288)
Q Consensus       181 ~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~~~  228 (288)
                      .+...++|..++|.+++++.+..||++.|.+......+..+......+
T Consensus       139 ~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~  186 (471)
T PRK10504        139 VTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMP  186 (471)
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999999999899999998877666555554444433

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.74  E-value=2.7e-16  Score=144.61  Aligned_cols=176  Identities=12%  Similarity=0.028  Sum_probs=145.1

Q ss_pred             CcchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHH
Q 023063           20 GMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIY   99 (288)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~   99 (288)
                      .++.+..+.+..+...++.....+.++.|+++++|.++.+.+++.+.+.+...+++++.|+++||+ ||||+++.+.+++
T Consensus        13 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~   91 (399)
T PRK05122         13 LTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGC   91 (399)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHH
Confidence            445666677777778888777888899999999999999999999999999999999999999998 9999999999888


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHH
Q 023063          100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (288)
Q Consensus       100 ~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (288)
                      .++.+.+.+.....+.              ...+...+++.|++.|++.+...+...+++.|.+|++      +|++..+
T Consensus        92 ~~~~~~~~~~~~~~~~--------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~  151 (399)
T PRK05122         92 ALSGLLYLLAGLLAAW--------------PVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGAL------HTGRVIS  151 (399)
T ss_pred             HHHHHHHHHhhhhhcc--------------chhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChh------hhccchh
Confidence            8877666544311000              0114567788899999999999998889999999887      6999999


Q ss_pred             HHHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHH
Q 023063          180 WYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAM  216 (288)
Q Consensus       180 ~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~  216 (288)
                      +...+.++|..+++.+++++.+..||+..+++..++.
T Consensus       152 ~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~  188 (399)
T PRK05122        152 WNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLA  188 (399)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            9989999999999999999888889998776655543

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.73  E-value=3.2e-16  Score=143.96  Aligned_cols=173  Identities=12%  Similarity=0.095  Sum_probs=140.2

Q ss_pred             CcchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHH
Q 023063           20 GMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIY   99 (288)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~   99 (288)
                      ++|..+......++..+......+.+|.+ .+++|.++.+.+++.+.+.+...++.++.|+++||+ |||+.+..+..+.
T Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~~   83 (394)
T PRK11652          6 NVNLLFMLVLLVAVGQMAQTIYVPAIADM-ARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSIF   83 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence            45666656666666665555554555544 567999999999999999999999999999999998 9999999999888


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHH
Q 023063          100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (288)
Q Consensus       100 ~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (288)
                      .++.++.....                      +.+.+++.+++.|++.+...+....+..|.++++      ++++..+
T Consensus        84 ~~~~~~~~~~~----------------------~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  135 (394)
T PRK11652         84 ILGTLVALFAH----------------------SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGT------QLRHANS  135 (394)
T ss_pred             HHHHHHHHHHc----------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHH------HHHHHHH
Confidence            88888776654                      5677888899999998877777778888888766      6888889


Q ss_pred             HHHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHH
Q 023063          180 WYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIA  222 (288)
Q Consensus       180 ~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~  222 (288)
                      .++.+..++..++|.+++.+.+..||+..|++.++..++..+.
T Consensus       136 ~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~  178 (394)
T PRK11652        136 LLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFS  178 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999888889999998876655544433

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.72  E-value=4.1e-16  Score=143.61  Aligned_cols=175  Identities=14%  Similarity=0.141  Sum_probs=143.1

Q ss_pred             CCcchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHH
Q 023063           19 GGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASII   98 (288)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l   98 (288)
                      .+|..+.......++..+..+......| .+.+++|+++.+.+++.+...++..++.++.|+++||+ |||+++..+.++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~   89 (406)
T PRK11551         12 RLALTIGLCFLVALLEGLDLQSAGVAAP-RMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVAL   89 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHH
Confidence            3444555555566666666655544444 45567999999999999999999999999999999998 999999999988


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHH
Q 023063           99 YQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  178 (288)
Q Consensus        99 ~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (288)
                      ..++.+++.+..                      +.+.+.+.+++.|++.+...+...+++.|.+|++      +|++..
T Consensus        90 ~~~~~~~~~~~~----------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~  141 (406)
T PRK11551         90 FGLFSLATAQAW----------------------DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPR------LRGTAV  141 (406)
T ss_pred             HHHHHHHHHHhc----------------------cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHH------HHHHHH
Confidence            888877766654                      6777888999999999998999999999999877      699999


Q ss_pred             HHHHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHH
Q 023063          179 NWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAF  223 (288)
Q Consensus       179 ~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~  223 (288)
                      ++++.+.++|..+++.+++.+.+..+|+..|++.+++.++..+..
T Consensus       142 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (406)
T PRK11551        142 SLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLL  186 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998888888899998888766554444433

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.71  E-value=5.3e-16  Score=142.20  Aligned_cols=177  Identities=12%  Similarity=0.122  Sum_probs=147.2

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i  101 (288)
                      +.++.+.+..++.....+...+.+|. +.+++|++..+.+++.+...++..++.++.|+++||+ |||+++..+..+..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~   80 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTE-LAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVI   80 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHH-HHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHH
Confidence            34555666666666666666666655 5678999999999999999999999999999999998 999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 023063          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (288)
Q Consensus       102 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (288)
                      +.+++..+.                      +++.+++.+++.|++.+...+...+++.|.++++      +|++.++.+
T Consensus        81 ~~~l~~~~~----------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  132 (382)
T PRK10091         81 GNAMFTLSS----------------------SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPG------KVTAAVAGM  132 (382)
T ss_pred             HHHHHHHhC----------------------cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChH------HhhHHHHHH
Confidence            998887766                      6788899999999999988888888889998876      688899999


Q ss_pred             HHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHHhcc
Q 023063          182 YFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYP  228 (288)
Q Consensus       182 ~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~~~  228 (288)
                      ..+..+|..++|.+++++.+..||++.|.+.++..++..+......+
T Consensus       133 ~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp  179 (382)
T PRK10091        133 VSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVP  179 (382)
T ss_pred             HHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999999999999988889999999887766555444333333

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.71  E-value=1.1e-15  Score=141.59  Aligned_cols=165  Identities=13%  Similarity=0.164  Sum_probs=140.0

Q ss_pred             CcchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHH
Q 023063           20 GMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIY   99 (288)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~   99 (288)
                      +++......+..+...+..+.. .+...++++++|+++.+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~~~   93 (426)
T PRK12307         16 QKNALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIVAY   93 (426)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHH
Confidence            3444554555555555555544 4455567788999999999999999999999999999999998 9999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHH
Q 023063          100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (288)
Q Consensus       100 ~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (288)
                      .++.+...++.                      +.+.+++.+++.|++.+...+...+++.|.+|++      +|+++.+
T Consensus        94 ~~~~~~~~~~~----------------------~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~------~r~~~~~  145 (426)
T PRK12307         94 SVGTGLSGLAS----------------------GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKH------LKSKASA  145 (426)
T ss_pred             HHHHHHHHHHh----------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHh------HhhHhhh
Confidence            99998888766                      6788899999999999999999999999999987      6999999


Q ss_pred             HHHHHHHHHHHHHHHhHhheeeccchhhhhhHhHH
Q 023063          180 WYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTF  214 (288)
Q Consensus       180 ~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~  214 (288)
                      ++..+..+|..+++.+.+.+.+.+||+..|++...
T Consensus       146 ~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~  180 (426)
T PRK12307        146 FLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLL  180 (426)
T ss_pred             HHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHH
Confidence            99999999999999999988888999999887543

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.71  E-value=6.2e-16  Score=144.24  Aligned_cols=165  Identities=16%  Similarity=0.142  Sum_probs=137.3

Q ss_pred             HHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Q 023063           27 IFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICL  106 (288)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~  106 (288)
                      .++..++..+..+.+...++.+. +++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+++
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~  105 (434)
T PRK11663         28 MYLGYALFYFTRKSFNAAMPEML-ADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGIINILF  105 (434)
T ss_pred             HHHHHHHHHHhhhhHHHhhHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHHHHHH
Confidence            33444444444444455565555 56999999999999999999999999999999998 99999999999999998888


Q ss_pred             HHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHH
Q 023063          107 TISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMG  186 (288)
Q Consensus       107 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (288)
                      ....                      +++.+++.+++.|++.|...+...+++.|++|++      +|++.+++++.+.+
T Consensus       106 ~~~~----------------------~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~------~rg~~~~~~~~~~~  157 (434)
T PRK11663        106 GFSS----------------------SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRT------ERGGWWAIWNTAHN  157 (434)
T ss_pred             HHHh----------------------HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHH------HHHHHHHHHHHHHH
Confidence            7765                      6777788888889999988888999999999987      69999999999999


Q ss_pred             HHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHH
Q 023063          187 AAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSII  221 (288)
Q Consensus       187 ~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i  221 (288)
                      +|+.+++.+.+++.+.+||++.|++.++..++..+
T Consensus       158 ~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~  192 (434)
T PRK11663        158 VGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGL  192 (434)
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence            99999999999998889999999887765544433

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.71  E-value=1.5e-15  Score=143.92  Aligned_cols=179  Identities=11%  Similarity=0.072  Sum_probs=126.6

Q ss_pred             cchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHH
Q 023063           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ  100 (288)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~  100 (288)
                      ++.+.......++....+|++..++|.|+++.+|++..+..+......++..++.+++|+++||+ |||+.+..+.++..
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~  327 (490)
T PRK10642        249 WRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVALF  327 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHH
Confidence            34444344445566788899999999999888999988888877788888889999999999998 99999888876544


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 023063          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (288)
Q Consensus       101 i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (288)
                      ++.+.+....                   ...+...+++++++.+++.+...+...++..|.+|++      .|++..++
T Consensus       328 ~~~~~~~~~~-------------------~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~------~Rg~~~g~  382 (490)
T PRK10642        328 VLAIPAFILI-------------------NSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTH------IRYSALAA  382 (490)
T ss_pred             HHHHHHHHHH-------------------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc------cchHHHHH
Confidence            4443322211                   0113455666777777777666677788889999998      69998987


Q ss_pred             HHHHHHHHHHHHHHhHhheeeccc-hhhhhhHhHHHHHHHHHHHHH
Q 023063          181 YYFVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLSIIAFLI  225 (288)
Q Consensus       181 ~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~i~~~~  225 (288)
                      .+....+++.++|.+.+++.+..+ |+..+++..+..++.++..++
T Consensus       383 ~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~  428 (490)
T PRK10642        383 AFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVT  428 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence            555456667889999888876554 565555444444444444333

>TIGR00895 2A0115 benzoate transport

Probab=99.71  E-value=1.6e-15  Score=138.10  Aligned_cols=175  Identities=12%  Similarity=0.113  Sum_probs=139.7

Q ss_pred             cchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHH
Q 023063           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ  100 (288)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~  100 (288)
                      ++.+.......+......+.. .....++.+++|++..+.+++.+...++..++.++.|+++||+ |||+.+..+.++..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~   93 (398)
T TIGR00895        16 WRAIILSFLIMLMDGYDLAAM-GFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILLFS   93 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHHHH
Confidence            344444444444444444433 3444556678999999999999999999999999999999998 99999999998888


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 023063          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (288)
Q Consensus       101 i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (288)
                      ++.+++....                      +.+.+++.+++.|++.+...+...+++.|.+|++      +|++..++
T Consensus        94 ~~~~~~~~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~  145 (398)
T TIGR00895        94 VFTLLCALAT----------------------NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKR------FRGTAVGL  145 (398)
T ss_pred             HHHHHHHHcc----------------------chHHHHHHHHHHhcccccchhhHHHHHHHHcCHH------hhchhHhh
Confidence            8877776654                      5677888899999999999999999999999876      69999999


Q ss_pred             HHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHH
Q 023063          181 YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (288)
Q Consensus       181 ~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~  225 (288)
                      .+.+..+|..+++.+.+++.+..||+..|++.+++..+..+....
T Consensus       146 ~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  190 (398)
T TIGR00895       146 MFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMR  190 (398)
T ss_pred             HhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHH
Confidence            999999999999999999988899999888875544444443333

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.71  E-value=7e-16  Score=145.12  Aligned_cols=175  Identities=12%  Similarity=0.208  Sum_probs=144.3

Q ss_pred             HHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHH
Q 023063           24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGM  103 (288)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~  103 (288)
                      +..+.+..++..+........+| ++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+.++++.+++.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~   81 (485)
T TIGR00711         4 TIVLMLGTFMAVLDSTIVNVAIP-TIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLGS   81 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHHH
Confidence            33444445555454444444444 55578999999999999999999999999999999998 99999999999999998


Q ss_pred             HHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHH
Q 023063          104 ICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF  183 (288)
Q Consensus       104 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (288)
                      +++..+.                      +.+.+.+.+++.|++.+...+...+++.|.+|++      +|+++.++++.
T Consensus        82 ~~~~~~~----------------------~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~  133 (485)
T TIGR00711        82 LLCGVAP----------------------NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPE------KRGRAMAIWGL  133 (485)
T ss_pred             HHHhCcC----------------------CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHH------HHHHHHHHHHH
Confidence            8877655                      6778889999999999999999999999999977      69999999999


Q ss_pred             HHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHHhcc
Q 023063          184 VMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYP  228 (288)
Q Consensus       184 ~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~~~  228 (288)
                      ...+|..++|.+++++.++.||++.|++...+.++..+......+
T Consensus       134 ~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~  178 (485)
T TIGR00711       134 TVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILP  178 (485)
T ss_pred             HHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcC
Confidence            999999999999999999999999998877666555544444333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.70  E-value=1.5e-15  Score=141.54  Aligned_cols=167  Identities=15%  Similarity=0.157  Sum_probs=120.9

Q ss_pred             HHHHHHhHHhhhhhHHHHhHHhcC---CCHHHHHH---HHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Q 023063           31 EVCEKLAVVGFNTNMISYLTTQLH---MPLTKAAN---TLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMI  104 (288)
Q Consensus        31 ~~~~~~~~~~~~~~l~~yl~~~~~---~~~~~~~~---~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~  104 (288)
                      .+++.+-... .+....++.++++   .+..+.+.   ......++..++.+++|+++||+ |||+++..+..++.++++
T Consensus        31 ~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~~  108 (432)
T PRK10406         31 NLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLISVCMMCFGSL  108 (432)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHH
Confidence            4444444444 3556667777774   55554333   33444555568999999999998 999999999999999998


Q ss_pred             HHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHH
Q 023063          105 CLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV  184 (288)
Q Consensus       105 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (288)
                      ++.++..   +..           .....+..+.+.|+++|+|.|...+...++++|.+|++      +|+...+..+.+
T Consensus       109 ~~~~~~~---~~~-----------~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~------~rg~~~~~~~~~  168 (432)
T PRK10406        109 VIACLPG---YET-----------IGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEG------RKGFYASFQYVT  168 (432)
T ss_pred             HHhhcCC---chh-----------HHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCC------cccHHHHHHHHH
Confidence            8876541   100           00012356888999999999999999999999999987      699999988888


Q ss_pred             HHHHHHHHHHhHhhee--------eccchhhhhhHhHHHHHHH
Q 023063          185 MGAAILVAVTVLVYIQ--------DNIGWGWGLGIPTFAMFLS  219 (288)
Q Consensus       185 ~~~g~~i~~~~~~~l~--------~~~g~~~~f~~~~~~~~~~  219 (288)
                      .+.|..+++.+...+.        +.+|||..|++.++..++.
T Consensus       169 ~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~  211 (432)
T PRK10406        169 LIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA  211 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence            8888888876654432        2579999998876655443

>PRK11043 putative transporter; Provisional

Probab=99.70  E-value=1.7e-15  Score=139.50  Aligned_cols=163  Identities=16%  Similarity=0.201  Sum_probs=133.1

Q ss_pred             HHHhHHhhhhhHHHH--hHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhh
Q 023063           34 EKLAVVGFNTNMISY--LTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAI  111 (288)
Q Consensus        34 ~~~~~~~~~~~l~~y--l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~  111 (288)
                      ...++++...+.|.+  +++++|.++.+.++..+.+.++..++.++.|+++||+ |||+.+..+..+..++.+++.... 
T Consensus        15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~-   92 (401)
T PRK11043         15 SMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWVE-   92 (401)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHhc-
Confidence            333444444445544  6678999999999999999999999999999999998 999999999988888887776654 


Q ss_pred             cCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHH
Q 023063          112 LPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILV  191 (288)
Q Consensus       112 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i  191 (288)
                                           +.+.+++.+++.|++.+...+...+++.|.++++      ++++.++..+...++|..+
T Consensus        93 ---------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~  145 (401)
T PRK11043         93 ---------------------SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQ------KANRVFATIMPLVALSPAL  145 (401)
T ss_pred             ---------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcH------HHHHHHHHHHHHHHHHHHH
Confidence                                 6677888899999988877777788899999886      5788888888888999999


Q ss_pred             HHHhHhheeeccchhhhhhHhHHHHHHHHHHHHH
Q 023063          192 AVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (288)
Q Consensus       192 ~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~  225 (288)
                      +|.+++++.+.+||+..|++..+..++..+..+.
T Consensus       146 g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  179 (401)
T PRK11043        146 APLLGAWLLNHFGWQAIFATLFAITLLLILPTLR  179 (401)
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988899999998877666555544433

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.70  E-value=6.4e-16  Score=139.65  Aligned_cols=153  Identities=17%  Similarity=0.140  Sum_probs=130.2

Q ss_pred             hhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 023063           43 TNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEG  122 (288)
Q Consensus        43 ~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~  122 (288)
                      +.+..++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++..+..+..++.+++.++.            
T Consensus        23 ~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~~------------   89 (377)
T TIGR00890        23 TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYAIAD------------   89 (377)
T ss_pred             hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHHHHH------------
Confidence            4456677889999999999999999999999999999999998 999999999999999998888776            


Q ss_pred             cccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhheeec
Q 023063          123 EQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN  202 (288)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~  202 (288)
                                +.+.+++.+.+.|++.+...+.....+.|.+|+       +|++..++...+.++|..+++.+.+.+.+.
T Consensus        90 ----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  152 (377)
T TIGR00890        90 ----------SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-------KRGLASGIIIGGYGLGSFILSPLITSVINL  152 (377)
T ss_pred             ----------HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-------ccHHHHHHHHHhcchhHhHHHHHHHHHHhc
Confidence                      778888899999999988777777788888874       489999999999999988877777766677


Q ss_pred             cchhhhhhHhHHHHHHHHHHHHH
Q 023063          203 IGWGWGLGIPTFAMFLSIIAFLI  225 (288)
Q Consensus       203 ~g~~~~f~~~~~~~~~~~i~~~~  225 (288)
                      .||+..|.+.++..++..+..+.
T Consensus       153 ~~~~~~f~~~~~~~~~~~~~~~~  175 (377)
T TIGR00890       153 EGVPAAFIYMGIIFLLVIVLGAF  175 (377)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHH
Confidence            89999998887766665544433

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.70  E-value=2.2e-15  Score=136.46  Aligned_cols=160  Identities=15%  Similarity=0.196  Sum_probs=127.2

Q ss_pred             hHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 023063           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (288)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~  102 (288)
                      ..+...+..+.....++...+.+|.++++++|+++.+.+++.+...++..++.++.|+++||+ |||+.+.++.++..++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~   80 (366)
T TIGR00886         2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIP   80 (366)
T ss_pred             chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence            345555566666666777777777789999999999999999999999999999999999998 9999999999999998


Q ss_pred             HHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHH
Q 023063          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (288)
Q Consensus       103 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (288)
                      .+++....                   .  +.+.+.+.+++.|++.+. .....++++|.+|++      +|++..+++.
T Consensus        81 ~~~~~~~~-------------------~--~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~------~r~~~~~~~~  132 (366)
T TIGR00886        81 CLWAGLAV-------------------Q--SYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKK------IQGTALGLAA  132 (366)
T ss_pred             HHHHHHHh-------------------h--hHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHh------hhhHHHHHHH
Confidence            88776543                   0  456777889999998654 455678899999887      6999999888


Q ss_pred             HHHHHHHHHHHHhHhheee----------ccchhhhhhH
Q 023063          183 FVMGAAILVAVTVLVYIQD----------NIGWGWGLGI  211 (288)
Q Consensus       183 ~~~~~g~~i~~~~~~~l~~----------~~g~~~~f~~  211 (288)
                      ...++|..+++.+++.+..          ..+|++.|++
T Consensus       133 ~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~  171 (366)
T TIGR00886       133 GWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI  171 (366)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence            7777777777766655433          3479988843

>TIGR00897 2A0118 polyol permease family

Probab=99.69  E-value=4.1e-15  Score=137.26  Aligned_cols=170  Identities=12%  Similarity=0.139  Sum_probs=134.3

Q ss_pred             CcchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHH
Q 023063           20 GMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIY   99 (288)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~   99 (288)
                      .+|.+....+..++...+.+....+++.|+ +++|.++.+.+++.+.+.++..++.++.|+++||+ ||||++..+..+.
T Consensus        11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~~~   88 (402)
T TIGR00897        11 IPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLLLW   88 (402)
T ss_pred             CCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHH
Confidence            345666666777777777776777888888 56899999999999999999999999999999998 9999999999988


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHH
Q 023063          100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (288)
Q Consensus       100 ~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (288)
                      .++.+++.....                  ...+.+.+++.+++.|+|.+...+...+.+.|.+|++      +|+++.+
T Consensus        89 ~~~~~~~~~~~~------------------~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~------~~g~~~g  144 (402)
T TIGR00897        89 CVGHAAFIVFGL------------------GHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQD------NLSSAVG  144 (402)
T ss_pred             HHHHHHHHHHhc------------------cCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHH------HHHHHHH
Confidence            888765532210                  0114666777888889888777667777788888876      6999999


Q ss_pred             HHHHHHHHHH-HHHHHhHhheeeccchhhhhhHhHHH
Q 023063          180 WYYFVMGAAI-LVAVTVLVYIQDNIGWGWGLGIPTFA  215 (288)
Q Consensus       180 ~~~~~~~~g~-~i~~~~~~~l~~~~g~~~~f~~~~~~  215 (288)
                      ..+.+.++|. .++|.+++++.+..||+..++.....
T Consensus       145 ~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~  181 (402)
T TIGR00897       145 WFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAF  181 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence            9999999996 57898888888888876555444433

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.69  E-value=2.9e-15  Score=137.50  Aligned_cols=168  Identities=11%  Similarity=0.086  Sum_probs=137.9

Q ss_pred             HHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Q 023063           26 FIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMIC  105 (288)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~  105 (288)
                      ......+....+.......+|.+ .+++|.+..+.++..+.+.++..++.++.|+++||+ |||+.++.+.++..++.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~lp~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~~~   84 (392)
T PRK10473          7 CSFALVLLYPAGIDMYLVGLPRI-AADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIASLL   84 (392)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHHHH
Confidence            34445555555555555555544 567999999999999999999999999999999998 9999999999988888887


Q ss_pred             HHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHH
Q 023063          106 LTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVM  185 (288)
Q Consensus       106 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (288)
                      +....                      +.+.+++.+++.|++.+...+...+++.|.+|++      +|++..+..+...
T Consensus        85 ~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~  136 (392)
T PRK10473         85 CSLAE----------------------TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDR------RRAKVLSLLNGIT  136 (392)
T ss_pred             HHHhC----------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHH
Confidence            77654                      5667788899999999988888899999999887      6999999999999


Q ss_pred             HHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHH
Q 023063          186 GAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAF  223 (288)
Q Consensus       186 ~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~  223 (288)
                      ++|..++|.+++.+.+..||+..|++.+++.++..+..
T Consensus       137 ~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~  174 (392)
T PRK10473        137 CIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLS  174 (392)
T ss_pred             HHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHH
Confidence            99999999999888788899998888776655554443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.69  E-value=7.3e-16  Score=139.65  Aligned_cols=154  Identities=13%  Similarity=0.183  Sum_probs=135.2

Q ss_pred             hHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCc
Q 023063           44 NMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGE  123 (288)
Q Consensus        44 ~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~  123 (288)
                      ....++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.+++....             
T Consensus        15 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~-------------   80 (399)
T TIGR00893        15 FAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFAG-------------   80 (399)
T ss_pred             HhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHHc-------------
Confidence            344557788999999999999999999999999999999998 999999999999888888887765             


Q ss_pred             ccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhheeecc
Q 023063          124 QVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNI  203 (288)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~  203 (288)
                               +.+.+++.+++.|++.+...+...+++.|.+|++      +|++.+++.+...++|..+++.+.+++.+..
T Consensus        81 ---------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  145 (399)
T TIGR00893        81 ---------AYVSLYILRVLLGAAEAPFFPGIILIVASWFPAS------ERATAVSIFNSAQGLGGIIGGPLVGWILIHF  145 (399)
T ss_pred             ---------CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHH------HHHHHHHHHHHhchHHHHHHHHHHHHHHHhC
Confidence                     6788889999999999999999999999999987      6999999999999999999999999888888


Q ss_pred             chhhhhhHhHHHHHHHHHHHHHh
Q 023063          204 GWGWGLGIPTFAMFLSIIAFLIG  226 (288)
Q Consensus       204 g~~~~f~~~~~~~~~~~i~~~~~  226 (288)
                      +|+..|.+.++..++..+.....
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~  168 (399)
T TIGR00893       146 SWQWAFIIEGVLGIIWGVLWLKF  168 (399)
T ss_pred             CchHHHHHHHHHHHHHHHHhhhe
Confidence            99999988777665555444433

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.69  E-value=4.4e-15  Score=136.55  Aligned_cols=173  Identities=14%  Similarity=0.033  Sum_probs=139.6

Q ss_pred             hHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHH-----HHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHH
Q 023063           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTK-----AANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASI   97 (288)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~   97 (288)
                      ....+.+..++...++....+.+|.|++ ++|++..+     .+++.++..+...++.++.|+++||+ |||+.+..+.+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~   92 (408)
T PRK09874         15 NLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSAL   92 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHHH
Confidence            4555556777777887777888888886 57887654     47788888899999999999999998 99999999998


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhH
Q 023063           98 IYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  177 (288)
Q Consensus        98 l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (288)
                      +..++.+++....                      +.+.+++.+++.|++.+ ..+...+++.|.+|++      +|++.
T Consensus        93 ~~~~~~~~~~~~~----------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~------~~~~~  143 (408)
T PRK09874         93 GMGIVMVLMGLAQ----------------------NIWQFLILRALLGLLGG-FVPNANALIATQVPRN------KSGWA  143 (408)
T ss_pred             HHHHHHHHHHHHh----------------------hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHh------hhhHH
Confidence            8888887776654                      67778888888888755 4566677888988876      68999


Q ss_pred             HHHHHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHHh
Q 023063          178 FNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIG  226 (288)
Q Consensus       178 ~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~  226 (288)
                      .+..+.+.++|..++|.+.+.+.+..+|+..|++.+++.++..+.....
T Consensus       144 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (408)
T PRK09874        144 LGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFC  192 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998888899999988877666555544433

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.68  E-value=1.9e-15  Score=137.73  Aligned_cols=157  Identities=14%  Similarity=0.154  Sum_probs=134.4

Q ss_pred             hhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 023063           40 GFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPP  119 (288)
Q Consensus        40 ~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~  119 (288)
                      ...+.+|.+.+ ++|+++.+.+++.+.+.++..++.++.|+++||+ |||+.+..+.++..++.+.+....         
T Consensus         9 ~~~p~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~~---------   77 (377)
T PRK11102          9 MYLPALPVIAA-DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALAQ---------   77 (377)
T ss_pred             HHhccHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHHc---------
Confidence            34466676664 6899999999999999999999999999999998 999999999999999888887655         


Q ss_pred             CCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhhe
Q 023063          120 CEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYI  199 (288)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l  199 (288)
                                   +.+.+.+.+++.|++.+...+...+++.|.+|++      +|++.+++.+....+|..++|.+++.+
T Consensus        78 -------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~l  138 (377)
T PRK11102         78 -------------TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKE------EFSRMMSFVTLVMTIAPLLAPIIGGWL  138 (377)
T ss_pred             -------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         5677888899999999988888999999999877      699999999999999999999999999


Q ss_pred             eeccchhhhhhHhHHHHHHHHHHHHHh
Q 023063          200 QDNIGWGWGLGIPTFAMFLSIIAFLIG  226 (288)
Q Consensus       200 ~~~~g~~~~f~~~~~~~~~~~i~~~~~  226 (288)
                      .+..||+..|++.++..++..+.....
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (377)
T PRK11102        139 LVWFSWHAIFWVLALAAILAAALVFFF  165 (377)
T ss_pred             HHHcChHHHHHHHHHHHHHHHHHHHHh
Confidence            888899999887776665554444333

>PRK03699 putative transporter; Provisional

Probab=99.68  E-value=4.8e-15  Score=136.39  Aligned_cols=175  Identities=11%  Similarity=0.126  Sum_probs=140.5

Q ss_pred             CCcchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHH
Q 023063           19 GGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASII   98 (288)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l   98 (288)
                      ++++..+...+..++.....+.+...++. +.+++|++..+.+++.+...++..++.+++|+++||+ |||+++..+.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~~   81 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGP-IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFAL   81 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence            34555666656666665555555454554 5578999999999999999999999999999999998 999999999998


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHH
Q 023063           99 YQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  178 (288)
Q Consensus        99 ~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (288)
                      ..++.+++.+..                      +.+.+++.+++.|++.+...+...+++.|.+|++      +|+...
T Consensus        82 ~~i~~~l~~~~~----------------------~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~------~r~~~~  133 (394)
T PRK03699         82 MILAVAGLMFSH----------------------SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGK------QRGSRL  133 (394)
T ss_pred             HHHHHHHHHHcc----------------------hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccc------hHHHHH
Confidence            888888877655                      6777888999999999988888889999999876      688888


Q ss_pred             HHHHHHHHHHHHHHHHhHhhee-eccchhhhhhHhHHHHHHHHHHH
Q 023063          179 NWYYFVMGAAILVAVTVLVYIQ-DNIGWGWGLGIPTFAMFLSIIAF  223 (288)
Q Consensus       179 ~~~~~~~~~g~~i~~~~~~~l~-~~~g~~~~f~~~~~~~~~~~i~~  223 (288)
                      +..+....+|+.++|.+.+++. +..|||..|.+.++..++..+..
T Consensus       134 ~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~  179 (394)
T PRK03699        134 LFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILT  179 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence            8888888899999998888764 45799999987776655544433

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.68  E-value=8.3e-15  Score=138.33  Aligned_cols=174  Identities=9%  Similarity=0.052  Sum_probs=128.7

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i  101 (288)
                      +.+.......++.....+.... ...++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++..+.++..+
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~~~  113 (476)
T PLN00028         36 RAFHLSWISFFTCFVSTFAAAP-LLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLTAP  113 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHH
Confidence            3344333444444454554443 34466788999999999998888899999999999999998 999999999988888


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 023063          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (288)
Q Consensus       102 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (288)
                      +.+++.++.                      +.+.+++.+++.|++.+... ....+++|.+|++      +|+.+.+..
T Consensus       114 ~~~~~~~~~----------------------s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~------~rg~a~g~~  164 (476)
T PLN00028        114 AVFCMSLVS----------------------SATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGK------IVGTANGIA  164 (476)
T ss_pred             HHHHHHHhc----------------------CHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChh------heeHHHHHH
Confidence            887777655                      56677788888998887643 3456789999987      699999998


Q ss_pred             HHHHHHHHHHHHHhHhhee----e-----ccchhhhhhHhHHHHHHHHHHHHHh
Q 023063          182 YFVMGAAILVAVTVLVYIQ----D-----NIGWGWGLGIPTFAMFLSIIAFLIG  226 (288)
Q Consensus       182 ~~~~~~g~~i~~~~~~~l~----~-----~~g~~~~f~~~~~~~~~~~i~~~~~  226 (288)
                      +...++|+.+++.+.+.+.    +     ..|||..|++.+++.++..+..++.
T Consensus       165 ~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~  218 (476)
T PLN00028        165 AGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTL  218 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            8777777777765554332    1     2589999998887766555444443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.68  E-value=2.7e-15  Score=138.22  Aligned_cols=152  Identities=14%  Similarity=0.150  Sum_probs=129.4

Q ss_pred             HHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 023063           38 VVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRP  117 (288)
Q Consensus        38 ~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~  117 (288)
                      ++.+.+.+| .+++++|++..+.+++.+.+.++..++.++.|+++||+ |||+++..+..+..++.+.+.++.       
T Consensus        25 ~~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a~-------   95 (393)
T PRK09705         25 LTSVGPLLP-QLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELYP-------   95 (393)
T ss_pred             hhccchhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHCc-------
Confidence            344444444 56678999999999999999999999999999999998 999999999999999999999876       


Q ss_pred             CCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHh
Q 023063          118 PPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLV  197 (288)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~  197 (288)
                                     +++.++++|++.|+|.+...+...+++.|.+| +      +|+++.+.+..+.++|..+++.+++
T Consensus        96 ---------------~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~------~~~~~~g~~~~~~~~g~~~g~~~~~  153 (393)
T PRK09705         96 ---------------QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-Q------RTPLVMGLWSAALMGGGGLGAAITP  153 (393)
T ss_pred             ---------------chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-c------cchhHHHHHHHHHHHHHHHHHHHHH
Confidence                           67778899999999999988888999999987 4      5899999999999999999999998


Q ss_pred             heeecc-chhhhhhHhHHHHHHHH
Q 023063          198 YIQDNI-GWGWGLGIPTFAMFLSI  220 (288)
Q Consensus       198 ~l~~~~-g~~~~f~~~~~~~~~~~  220 (288)
                      ++.++. +|+..+.+.++..++.+
T Consensus       154 ~l~~~~~~w~~~~~~~~~~~~~~~  177 (393)
T PRK09705        154 WLVQHSETWYQTLAWWALPAVVAL  177 (393)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHH
Confidence            887765 79987765544443333

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.67  E-value=3.9e-15  Score=140.69  Aligned_cols=166  Identities=13%  Similarity=0.180  Sum_probs=139.2

Q ss_pred             CCcchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHH
Q 023063           19 GGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASII   98 (288)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l   98 (288)
                      .+|+.+..+.+..++..+..... ..+..++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||++++.+.++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~   94 (496)
T PRK03893         17 AQWKAFSAAWLGYLLDGFDFVLI-TLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIVL   94 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHH
Confidence            34555555555555555554444 4444567788999999999999999999999999999999998 999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHH
Q 023063           99 YQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  178 (288)
Q Consensus        99 ~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (288)
                      ..++.+.+.+..                      +.+.+++.+++.|++.+...+...+++.|.+|++      +|++..
T Consensus        95 ~~~~~~~~~~~~----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~  146 (496)
T PRK03893         95 FSVGTLACGFAP----------------------GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKH------LRNKAS  146 (496)
T ss_pred             HHHHHHHHHHHh----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH------HHHHHH
Confidence            989888887765                      6778888999999999999999999999999987      699999


Q ss_pred             HHHHHHHHHHHHHHHHhHhheeeccchhhhhhHhHH
Q 023063          179 NWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTF  214 (288)
Q Consensus       179 ~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~  214 (288)
                      +..+.+.++|..++|.+.+.+.+.++|+..|++..+
T Consensus       147 ~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~  182 (496)
T PRK03893        147 GFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGIL  182 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence            999999999999999999999899999998876443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.67  E-value=3.9e-15  Score=135.19  Aligned_cols=171  Identities=11%  Similarity=0.062  Sum_probs=131.6

Q ss_pred             HHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHH-HHHHHHHHHHHHH
Q 023063           29 SNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITI-ASIIYQIGMICLT  107 (288)
Q Consensus        29 ~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~-~~~l~~i~~~~~~  107 (288)
                      +..++..++.....+.++.|+++++|.++.+.+++.+.+.+...+..++.|+++||+ ||||.++. +..+..++.++..
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~   82 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLFA   82 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHHH
Confidence            456677777777888899999999999999999999999999999999999999998 99887654 4555555555555


Q ss_pred             HHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhh--HHHHHHHHH
Q 023063          108 ISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWK--YFNWYYFVM  185 (288)
Q Consensus       108 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  185 (288)
                      .+.                      +++.+++.+++.+.+.+...+...++..|..+++      +|++  ..+......
T Consensus        83 ~~~----------------------~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~------~~~~~~~~~~~~~~~  134 (375)
T TIGR00899        83 WNR----------------------NYFLLLVLGVLLSSFASTANPQLFALAREHADRT------GREAVMFSSVMRAQI  134 (375)
T ss_pred             hcc----------------------hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhc------chhhHHHHHHHHHHH
Confidence            544                      5666677777777777777777777888877654      3443  356777788


Q ss_pred             HHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHHhcc
Q 023063          186 GAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYP  228 (288)
Q Consensus       186 ~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~~~  228 (288)
                      ++|..++|.+++++.+..||+..|++.++..++..+..+...+
T Consensus       135 ~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~  177 (375)
T TIGR00899       135 SLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLP  177 (375)
T ss_pred             hHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999988899999999887766655554444333

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10133 L-fucose transporter; Provisional

Probab=99.67  E-value=7.2e-15  Score=137.36  Aligned_cols=153  Identities=13%  Similarity=0.047  Sum_probs=121.1

Q ss_pred             CcchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHH
Q 023063           20 GMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIY   99 (288)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~   99 (288)
                      +...+..+..+.+...+........+|. +++++|.++.+.++..+.+.++..++.++.|+++||+ |||+++..+..++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~-i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~  101 (438)
T PRK10133         24 YIIPFALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLY  101 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHH
Confidence            4444455555555556666555555554 5889999999999999999999999999999999998 9999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHH
Q 023063          100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (288)
Q Consensus       100 ~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (288)
                      .++.+++....                   ...+++.+.++|+++|+|.+...+...+++.|..+++      ++....+
T Consensus       102 ~~~~~l~~~~~-------------------~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~------~~~~~~s  156 (438)
T PRK10133        102 ALGAALFWPAA-------------------EIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES------SGHFRLN  156 (438)
T ss_pred             HHHHHHHHHHH-------------------hcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChh------hHHHHHH
Confidence            99998764222                   0126788889999999999999999999999875554      4555678


Q ss_pred             HHHHHHHHHHHHHHHhHhhe
Q 023063          180 WYYFVMGAAILVAVTVLVYI  199 (288)
Q Consensus       180 ~~~~~~~~g~~i~~~~~~~l  199 (288)
                      ..+....+|..+++.+++.+
T Consensus       157 ~~~~~~~~G~~~g~~~g~~l  176 (438)
T PRK10133        157 LAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            88888889999998887643

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.67  E-value=5e-15  Score=145.40  Aligned_cols=152  Identities=15%  Similarity=0.113  Sum_probs=126.8

Q ss_pred             hhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 023063           42 NTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCE  121 (288)
Q Consensus        42 ~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~  121 (288)
                      ...+..++.+++|++..+.+++.+++.++..++.+++|+++||+ |||+++++++++..++.+++.++.           
T Consensus       186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~afa~-----------  253 (742)
T TIGR01299       186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFSSFVQ-----------  253 (742)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence            34455667778999999999999999999999999999999998 999999999999998888887765           


Q ss_pred             CcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhheee
Q 023063          122 GEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQD  201 (288)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~  201 (288)
                                 +.+.+++++++.|+|.|+..+...++++|.+|++      .|+..++++.....+|.++++.++..+..
T Consensus       254 -----------s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~------~Rg~~~g~~~~~~~iG~ila~~la~~il~  316 (742)
T TIGR01299       254 -----------GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQE------KRGEHLSWLCMFWMIGGIYAAAMAWAIIP  316 (742)
T ss_pred             -----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       6778889999999999999999999999999987      79999999999999999998877654433


Q ss_pred             c-------------cchhhhhhHhHHHHHHHHHH
Q 023063          202 N-------------IGWGWGLGIPTFAMFLSIIA  222 (288)
Q Consensus       202 ~-------------~g~~~~f~~~~~~~~~~~i~  222 (288)
                      .             .+||+.+++.++..++.++.
T Consensus       317 ~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~  350 (742)
T TIGR01299       317 HYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGA  350 (742)
T ss_pred             hccchhccccccccccHHHHHHHHHHHHHHHHHH
Confidence            2             35787777666554444433

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.67  E-value=7.8e-16  Score=144.89  Aligned_cols=156  Identities=11%  Similarity=0.017  Sum_probs=125.9

Q ss_pred             HHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccc
Q 023063           46 ISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQV  125 (288)
Q Consensus        46 ~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~  125 (288)
                      ...+.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.+.+....               
T Consensus        52 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~---------------  115 (467)
T PRK09556         52 QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASL---------------  115 (467)
T ss_pred             hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHH---------------
Confidence            4456788999999999999999999999999999999998 999999998888777776666432               


Q ss_pred             ccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhheeecc--
Q 023063          126 CQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNI--  203 (288)
Q Consensus       126 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~--  203 (288)
                      |.  ...+.+.+++.|++.|++.+...+...++++|++|++      +|+++++++..+.++|..+++.+..++.+..  
T Consensus       116 ~~--~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~  187 (467)
T PRK09556        116 GS--GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRR------KRGRFLGFWNISHNLGGAGAGGVALWGANYFFD  187 (467)
T ss_pred             hc--ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCcc------ceeeeEEeeecccchhhhHHHHHHHHHHHhhcc
Confidence            00  0126788889999999999999999999999999988      6999999999999999999998877655442  


Q ss_pred             -chhhhhhHhHHHHHHHHHHHHH
Q 023063          204 -GWGWGLGIPTFAMFLSIIAFLI  225 (288)
Q Consensus       204 -g~~~~f~~~~~~~~~~~i~~~~  225 (288)
                       +|+..|.+.+++.++..+..+.
T Consensus       188 ~~~~~~f~~~g~~~~~~~i~~~~  210 (467)
T PRK09556        188 GHVIGMFIFPSIIALIIGFIGLR  210 (467)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHH
Confidence             5887777766655544443333

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.67  E-value=8.5e-15  Score=134.11  Aligned_cols=156  Identities=14%  Similarity=0.117  Sum_probs=135.0

Q ss_pred             cchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHH
Q 023063           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ  100 (288)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~  100 (288)
                      .+.++.+++..++.........+.+|.|+. ++|.+..+.+++.+.+.++..++.++.|+++||+ |||+.+..+.++..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~   82 (381)
T PRK03633          5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFA   82 (381)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHH
Confidence            456778888888888888888888888886 5799999999999999999999999999999998 99999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 023063          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (288)
Q Consensus       101 i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (288)
                      ++.+.+..+.                      +.+.+.+.+++.|++.+...+...+.+.|..+++      +|++.++.
T Consensus        83 ~~~~~~~~~~----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~  134 (381)
T PRK03633         83 AGCAGLGLMV----------------------GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSR------NRGRLLAA  134 (381)
T ss_pred             HHHHHHHHhc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH------HHHHHHHH
Confidence            9888877655                      6788888999999999988877777777877765      69999999


Q ss_pred             HHHHHHHHHHHHHHhHhheeeccchh
Q 023063          181 YYFVMGAAILVAVTVLVYIQDNIGWG  206 (288)
Q Consensus       181 ~~~~~~~g~~i~~~~~~~l~~~~g~~  206 (288)
                      +..+.++|..++|.+++.+.+...+.
T Consensus       135 ~~~~~~~g~~~g~~~~~~l~~~~~~~  160 (381)
T PRK03633        135 YMMVYYLGTVLGQLLVSKVSTELMSV  160 (381)
T ss_pred             HHHHHHHHHHHHHHHHhcccccccch
Confidence            99999999999999999887654333

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.66  E-value=1.1e-14  Score=134.86  Aligned_cols=173  Identities=12%  Similarity=0.047  Sum_probs=134.9

Q ss_pred             HHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHH
Q 023063           24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGM  103 (288)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~  103 (288)
                      ++.+....+...+.. ++...+...+++++|.+..+.+++.+.+.++..++.++.|++.||+ |||+++.++.+++.++.
T Consensus         5 ~~~~~~~f~~~G~~~-~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~   82 (410)
T TIGR00885         5 FALITSLFALWGFAN-DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGA   82 (410)
T ss_pred             HHHHHHHHHHHHHHH-HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence            333444444444443 3444455677889999999999999999999999999999999998 99999999999999998


Q ss_pred             HHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHH
Q 023063          104 ICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF  183 (288)
Q Consensus       104 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (288)
                      +++..+.                   ...+++.+.+.+++.|+|.|...+...+++.+..|++      ++++..+..+.
T Consensus        83 ~l~~~~~-------------------~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~------~~~~~~~~~~~  137 (410)
T TIGR00885        83 FLFWPAA-------------------EIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPES------TATRRLNLAQS  137 (410)
T ss_pred             HHHHHHH-------------------hhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHh------HHHHHHHHHHH
Confidence            7765443                   1125677888899999999999999999999988876      57888888888


Q ss_pred             HHHHHHHHHHHhHhheee--------------------------ccchhhhhhHhHHHHHHHHHHH
Q 023063          184 VMGAAILVAVTVLVYIQD--------------------------NIGWGWGLGIPTFAMFLSIIAF  223 (288)
Q Consensus       184 ~~~~g~~i~~~~~~~l~~--------------------------~~g~~~~f~~~~~~~~~~~i~~  223 (288)
                      ..++|..++|.+.+.+..                          ..+|+.+|.+.+++.++..+..
T Consensus       138 ~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~  203 (410)
T TIGR00885       138 FNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI  203 (410)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988776532                          1369999987777555544333

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.66  E-value=3.1e-15  Score=140.52  Aligned_cols=149  Identities=10%  Similarity=0.114  Sum_probs=128.3

Q ss_pred             hcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccc
Q 023063           52 QLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANK  131 (288)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  131 (288)
                      +++++..+.+++.+.+.++..++.+++|+++||+ |||+++..+.++..++.+++....                    .
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~--------------------~  128 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAA--------------------G  128 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHH--------------------H
Confidence            6889999999999999999999999999999998 999999999988888877765443                    0


Q ss_pred             chHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhheeec-cchhhhhh
Q 023063          132 GQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN-IGWGWGLG  210 (288)
Q Consensus       132 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~-~g~~~~f~  210 (288)
                      .+.+.+++.++++|++.+...+....+++|.+|++      +|+++.++.+.+.++|..+++.+.+++.+. .||+..|+
T Consensus       129 ~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~  202 (465)
T TIGR00894       129 GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPK------ERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFY  202 (465)
T ss_pred             cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehh
Confidence            13566888899999999999999999999999987      699999999999999999999999998888 49999999


Q ss_pred             HhHHHHHHHHHHHHHhc
Q 023063          211 IPTFAMFLSIIAFLIGY  227 (288)
Q Consensus       211 ~~~~~~~~~~i~~~~~~  227 (288)
                      +.++..++..+..+...
T Consensus       203 i~~~~~~~~~~~~~~~~  219 (465)
T TIGR00894       203 VFGIVGCAWSLLWFVFP  219 (465)
T ss_pred             hhhHHHHHHHHHHHHHh
Confidence            88776655554444433

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.65  E-value=1.1e-15  Score=137.68  Aligned_cols=178  Identities=13%  Similarity=0.060  Sum_probs=154.3

Q ss_pred             CcchHHHHHHHHHHHHHhHHhhhhh---HHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHH
Q 023063           20 GMITMPFIFSNEVCEKLAVVGFNTN---MISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIAS   96 (288)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~---l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~   96 (288)
                      +.|.-+-+++..++...++|-+.-+   ..+++.++.++|.+|.+++.+.+.+.+.++-.+.|.++||. +.|..+-+++
T Consensus        23 y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gL  101 (448)
T COG2271          23 YKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGL  101 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHH
Confidence            3344445566677777777776633   44678888899999999999999999999999999999998 9999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhh
Q 023063           97 IIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWK  176 (288)
Q Consensus        97 ~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (288)
                      ++..+..+++.++.                      +.+++.+..++.|...|.-.|.....++.+++++      +||+
T Consensus       102 ilsai~nil~Gfs~----------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~------eRG~  153 (448)
T COG2271         102 ILSAIVNILFGFSP----------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRK------ERGT  153 (448)
T ss_pred             HHHHHHHHHHhhhh----------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCcc------ccCc
Confidence            99999999999877                      7888888889999999999999999999999998      6999


Q ss_pred             HHHHHHHHHHHHHHHHHHhH--hheeeccchhhhhhHhHHHHHHHHHHHHHh
Q 023063          177 YFNWYYFVMGAAILVAVTVL--VYIQDNIGWGWGLGIPTFAMFLSIIAFLIG  226 (288)
Q Consensus       177 ~~~~~~~~~~~g~~i~~~~~--~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~  226 (288)
                      ..++++.+.|+|+.+.|.+.  +++..+++|+..|++++++.++..+..+..
T Consensus       154 ~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~  205 (448)
T COG2271         154 WWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFL  205 (448)
T ss_pred             eEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999  888888899999999998876655544443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.65  E-value=8.1e-15  Score=130.86  Aligned_cols=167  Identities=17%  Similarity=0.321  Sum_probs=144.9

Q ss_pred             HHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Q 023063           26 FIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMIC  105 (288)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~  105 (288)
                      .+....++..+..+......+.|.+ ++|.+..+.+++.+...+...++.++.|+++||+ |||+.+..+..+..++.+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~~   80 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLAE-DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSLL   80 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHHH
Confidence            3445666777777777777777775 5799999999999999999999999999999998 9999999999999999888


Q ss_pred             HHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHH
Q 023063          106 LTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVM  185 (288)
Q Consensus       106 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (288)
                      .....                      +.+.+.+.+++.|++.+...+...+++.|.+|++      +|++.+++.+...
T Consensus        81 ~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~  132 (352)
T cd06174          81 LAFAS----------------------SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPK------ERGRALGLFSAGF  132 (352)
T ss_pred             HHHhc----------------------cHHHHHHHHHHHHcccccccHhHHHHHHHhCCcc------chhhhhhHHHHHH
Confidence            87765                      6778889999999999999999999999999987      6999999999999


Q ss_pred             HHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHH
Q 023063          186 GAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIA  222 (288)
Q Consensus       186 ~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~  222 (288)
                      ++|..++|.+.+.+.+..+|+..+++.++..++..+.
T Consensus       133 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (352)
T cd06174         133 GLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALL  169 (352)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988888999888777665554443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.65  E-value=1.3e-14  Score=133.67  Aligned_cols=163  Identities=17%  Similarity=0.105  Sum_probs=129.7

Q ss_pred             hHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 023063           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (288)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~  102 (288)
                      ..+.+....++..++.......++.. .++++.++.+.+++.+.+.+...++.+++|+++||+ |||++++.+..+..++
T Consensus         4 ~f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~~   81 (393)
T PRK11195          4 GFYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLLG   81 (393)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHHH
Confidence            34455566666666554444444444 568899999999999999999999999999999998 9999999999998888


Q ss_pred             HHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHH
Q 023063          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (288)
Q Consensus       103 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (288)
                      .+.+....                      +.   ++.++++|++.+...+...+++.|.+|++      +|+++.++..
T Consensus        82 ~~~~~~~~----------------------~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~------~~~~a~~~~~  130 (393)
T PRK11195         82 CLLMLFGI----------------------HP---LLAYGLVGIGAAAYSPAKYGILTELLPGE------KLVKANGWME  130 (393)
T ss_pred             HHHHHHHH----------------------HH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHH------HHHHHHHHHH
Confidence            77765543                      22   56788999999999999999999999987      7999999999


Q ss_pred             HHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHH
Q 023063          183 FVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLS  219 (288)
Q Consensus       183 ~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~  219 (288)
                      ...++|..+||.++|++.+. .|+..+.+.+...+++
T Consensus       131 ~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~  166 (393)
T PRK11195        131 GSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLA  166 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            99999999999999988774 3665555554433333

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.65  E-value=1.9e-15  Score=140.04  Aligned_cols=173  Identities=14%  Similarity=0.179  Sum_probs=133.4

Q ss_pred             HHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Q 023063           27 IFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICL  106 (288)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~  106 (288)
                      ++...++..++.......+|.+.+ +++.++.+.+++.+...+...++.++.|+++||+ |||+.+..+..+..++.+..
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~~~~~   99 (417)
T PRK10489         22 VFIARFISIFGLGLLGVAVPVQIQ-MMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLGFIGL   99 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHHHHHH
Confidence            334455555555555566666664 5678999999999999999999999999999998 99999998887777776655


Q ss_pred             HHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHH
Q 023063          107 TISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMG  186 (288)
Q Consensus       107 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (288)
                      ......                 ...+.+.+++.+++.|++.+...+...+++.|.+|++      +|++..+..+...+
T Consensus       100 ~~~~~~-----------------~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  156 (417)
T PRK10489        100 ALNAFL-----------------PEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRE------NLMQAGAITMLTVR  156 (417)
T ss_pred             HHHHHc-----------------CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHH------HHHHHHHHHHHHHh
Confidence            432100                 0114566777888889888877788888899999876      68999999999999


Q ss_pred             HHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHH
Q 023063          187 AAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFL  224 (288)
Q Consensus       187 ~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~  224 (288)
                      +|..++|.+++.+.+..||++.|.+.++..++..+...
T Consensus       157 ~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  194 (417)
T PRK10489        157 LGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLL  194 (417)
T ss_pred             HHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988888999988877666555544433

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.65  E-value=1.9e-15  Score=136.64  Aligned_cols=153  Identities=14%  Similarity=0.165  Sum_probs=131.8

Q ss_pred             HHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcc
Q 023063           45 MISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQ  124 (288)
Q Consensus        45 l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~  124 (288)
                      ...++.+++|++..+.+++.+...++..++.++.|+++||+ |||+.+..+.++..++.+++..+.              
T Consensus        17 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~--------------   81 (379)
T TIGR00881        17 AMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFST--------------   81 (379)
T ss_pred             hhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHhh--------------
Confidence            44577788999999999999999999999999999999998 999999999999999988888766              


Q ss_pred             cccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHH-HhHhheeecc
Q 023063          125 VCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAV-TVLVYIQDNI  203 (288)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~-~~~~~l~~~~  203 (288)
                              +.+.+++.+++.|++.+...+...+++.|.+|++      +|++..++.+.+.++|..+++ .+.+.+.+..
T Consensus        82 --------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  147 (379)
T TIGR00881        82 --------SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRS------ERGTWVSFWNCSHNVGGGLLPPLVLFGIAELY  147 (379)
T ss_pred             --------hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHh------hheeeEeehhccchhHHHHHHHHHHHHHHhcC
Confidence                    6778889999999999999999999999999987      699999999999999999999 5666677778


Q ss_pred             chhhhhhHhHHHHHHHHHHHHHh
Q 023063          204 GWGWGLGIPTFAMFLSIIAFLIG  226 (288)
Q Consensus       204 g~~~~f~~~~~~~~~~~i~~~~~  226 (288)
                      +|+..|++.+++.++..+..+..
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~  170 (379)
T TIGR00881       148 SWHWVFIVPGIIAIIVSLICFLL  170 (379)
T ss_pred             CchhHHHHHHHHHHHHHHHHhee
Confidence            99998887776655544444433

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.64  E-value=8.4e-15  Score=136.29  Aligned_cols=143  Identities=20%  Similarity=0.297  Sum_probs=121.5

Q ss_pred             CCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchH
Q 023063           55 MPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQV  134 (288)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  134 (288)
                      .+..+.+++.+.+.++..++.++.|+++||+ |||++++++.++..++.++.....                   ...+.
T Consensus        68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~  127 (481)
T TIGR00879        68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAA-------------------FALSV  127 (481)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhc-------------------cccch
Confidence            3389999999999999999999999999998 999999999999999888886544                   11244


Q ss_pred             HHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhH---hheeeccchhhhhhH
Q 023063          135 AILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVL---VYIQDNIGWGWGLGI  211 (288)
Q Consensus       135 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~---~~l~~~~g~~~~f~~  211 (288)
                      +.+++++++.|+|.+...+...++++|.+|++      +|++..++++.+.++|..+++.++   ....+..+|+..|++
T Consensus       128 ~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~  201 (481)
T TIGR00879       128 EMLIVGRVLLGIGVGIASALVPMYLSEIAPKA------LRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGL  201 (481)
T ss_pred             HHHHHHHHHHHhhhhHHHhHHHHHHHccCChh------hhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHH
Confidence            67888999999999999999999999999987      699999999999999999999998   666677899999988


Q ss_pred             hHHHHHHHHHHH
Q 023063          212 PTFAMFLSIIAF  223 (288)
Q Consensus       212 ~~~~~~~~~i~~  223 (288)
                      .++..++.++..
T Consensus       202 ~~~~~~~~~~~~  213 (481)
T TIGR00879       202 QLIPAGLLFLGL  213 (481)
T ss_pred             HHHHHHHHHHHH
Confidence            655554444333

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.63  E-value=1.2e-14  Score=130.90  Aligned_cols=182  Identities=17%  Similarity=0.166  Sum_probs=147.4

Q ss_pred             cchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhcc-chhHHH-HHHHHH
Q 023063           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYA-GRFWTI-TIASII   98 (288)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~-Grr~~i-~~~~~l   98 (288)
                      .+.+|.+.++.++..+.-|++..|.|.|+.|..|++..++++..+.+..++..+.++.||+|||++ |||..+ +++++.
T Consensus       251 Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~  330 (448)
T COG2271         251 NKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLL  330 (448)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence            478999999999999999999999999999999999999999999999999999999999999998 777544 444445


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHH
Q 023063           99 YQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  178 (288)
Q Consensus        99 ~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (288)
                      ..++.+..+...                    +.+..+..+..+.+|+-..+....+.....|..|++      ..|++.
T Consensus       331 i~~~~~~~w~~~--------------------~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~------AaGtA~  384 (448)
T COG2271         331 ITASLVLYWLAP--------------------NGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKK------AAGTAT  384 (448)
T ss_pred             HHHHHHHHHcCC--------------------CccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHh------hccchh
Confidence            555555554433                    225566666677777777776677777788998887      588888


Q ss_pred             HHHHHHHHH-HHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHHhcc
Q 023063          179 NWYYFVMGA-AILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYP  228 (288)
Q Consensus       179 ~~~~~~~~~-g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~~~  228 (288)
                      +...+...+ |...+....+++.+.+||...|.+..+..+++.+.+....+
T Consensus       385 Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~  435 (448)
T COG2271         385 GFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN  435 (448)
T ss_pred             chhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence            888887777 88889999999999999999998888777777766655543

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.63  E-value=2e-14  Score=135.28  Aligned_cols=178  Identities=13%  Similarity=-0.002  Sum_probs=131.9

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i  101 (288)
                      +.+|.+.+..++....++++..++|.|+++++|++..++++......++..++.+++|+++||+ |||+.+.....+..+
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~  336 (467)
T PRK09556        258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALI  336 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence            4577777777787888888889999999999999999999999989999999999999999998 998877665444433


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 023063          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (288)
Q Consensus       102 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (288)
                      +..+..+..                    ..+.....+.+++.|+..............|.+|++      .++++.++.
T Consensus       337 ~~~~~~~~~--------------------~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~------~~g~a~gi~  390 (467)
T PRK09556        337 IFTLGVYQH--------------------ATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKK------AIGVANGIK  390 (467)
T ss_pred             HHHHHHHHh--------------------cCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchh------hHHHHHHHH
Confidence            332222211                    113334445555556443333333345677999987      699999999


Q ss_pred             HHHHHH-HHHHHHHhHhheee------------ccchhhhhhHhHHHHHHHHHHHHHh
Q 023063          182 YFVMGA-AILVAVTVLVYIQD------------NIGWGWGLGIPTFAMFLSIIAFLIG  226 (288)
Q Consensus       182 ~~~~~~-g~~i~~~~~~~l~~------------~~g~~~~f~~~~~~~~~~~i~~~~~  226 (288)
                      +...++ |+.++|.+.|++.+            ..||+..|.+..++.+++.+..+..
T Consensus       391 ~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  448 (467)
T PRK09556        391 GTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIV  448 (467)
T ss_pred             HHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence            998886 77999999999988            5689999988877777766555443

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.63  E-value=4.8e-14  Score=129.76  Aligned_cols=175  Identities=14%  Similarity=0.090  Sum_probs=127.8

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i  101 (288)
                      +..+..+...+.....++.+..++|.|+++++|+++.+.+.+.+...+...++.+++|+++||+ |||+.+..+.....+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~~~  294 (393)
T PRK15011        216 RDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAGVC  294 (393)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHH
Confidence            3334333344444445555567889999999999999999888777777888899999999998 999988776655544


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 023063          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (288)
Q Consensus       102 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (288)
                      .........                      +.+.+.+.+++.+++.+...+...++..|.+|+       ++++..+.+
T Consensus       295 ~~~~~~~~~----------------------~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-------~~g~~~~~~  345 (393)
T PRK15011        295 FYAGMLMAH----------------------SPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-------QAGSATTLY  345 (393)
T ss_pred             HHHHHHHHh----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------CcchHHHHH
Confidence            433332222                      344445556666666666556667778888875       488899998


Q ss_pred             HHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHHh
Q 023063          182 YFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIG  226 (288)
Q Consensus       182 ~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~  226 (288)
                      +...++|..++|.++|.+.+..||+..|.+..++.+++++..+..
T Consensus       346 ~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK15011        346 TNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI  390 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            888999999999999999998899998888777776666555543

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.62  E-value=1.9e-14  Score=135.38  Aligned_cols=152  Identities=14%  Similarity=0.187  Sum_probs=121.6

Q ss_pred             CCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCCCcccccccccc
Q 023063           54 HMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAIL-PQLRPPPCEGEQVCQEANKG  132 (288)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~  132 (288)
                      +.++.+.+++.+.+.++..++++++|+++||+ |||++++++.+++.++.+...+.... +...           .++..
T Consensus        51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~-----------~~~~~  118 (479)
T PRK10077         51 SAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISALGSAWPEFGFTSIG-----------PDNTG  118 (479)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhhcccccccc-----------ccchh
Confidence            88999999999999999999999999999998 99999999999998888777653200 0000           00112


Q ss_pred             hHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhhee--------eccc
Q 023063          133 QVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQ--------DNIG  204 (288)
Q Consensus       133 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~--------~~~g  204 (288)
                      ....++++|++.|++.|...+...++++|.+|++      +|++.++....+..+|..+++.++..+.        +..|
T Consensus       119 ~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~------~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g  192 (479)
T PRK10077        119 YVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAH------IRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDG  192 (479)
T ss_pred             HHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChh------hhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCC
Confidence            3566788999999999999999999999999987      6999999999999999999887655432        4568


Q ss_pred             hhhhhhHhHHHHHHHHHHH
Q 023063          205 WGWGLGIPTFAMFLSIIAF  223 (288)
Q Consensus       205 ~~~~f~~~~~~~~~~~i~~  223 (288)
                      ||+.|++.++..++..+..
T Consensus       193 Wr~~f~~~~~~~~~~~~~~  211 (479)
T PRK10077        193 WRYMFASEAIPALLFLMLL  211 (479)
T ss_pred             hHHHHHHHHHHHHHHHHHH
Confidence            9999988776665554433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.62  E-value=2.4e-14  Score=134.41  Aligned_cols=150  Identities=12%  Similarity=0.069  Sum_probs=124.0

Q ss_pred             HHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccc
Q 023063           47 SYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVC  126 (288)
Q Consensus        47 ~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~  126 (288)
                      ..+.+++|++..+.+++.+.+.+...++.++.|+++||+ |||++++.+.++..++.+++..+.                
T Consensus        43 ~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~----------------  105 (455)
T TIGR00892        43 KELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFSS----------------  105 (455)
T ss_pred             HHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHhh----------------
Confidence            345578999999999999999999999999999999998 999999999988888888776655                


Q ss_pred             cccccchHHHHHH-HHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhheeeccch
Q 023063          127 QEANKGQVAILYV-SLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGW  205 (288)
Q Consensus       127 ~~~~~~~~~~~~~-~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~  205 (288)
                            +.+.+++ .+++.|++.+...+...+++.+.+++       +|+++.++.+.+..+|..++|.+.+.+.+.+||
T Consensus       106 ------~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gw  172 (455)
T TIGR00892       106 ------NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFYR-------RRPLANGLAMAGSPVFLSTLAPLNQYLFESFGW  172 (455)
T ss_pred             ------hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHh-------hHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCh
Confidence                  4555544 45788998887666667788888863       599999999999999999999999999888999


Q ss_pred             hhhhhHhHHHHHHHHHHHHHh
Q 023063          206 GWGLGIPTFAMFLSIIAFLIG  226 (288)
Q Consensus       206 ~~~f~~~~~~~~~~~i~~~~~  226 (288)
                      ++.|++.+++.++..+..++.
T Consensus       173 r~~f~~~~~~~~~~~v~~~~~  193 (455)
T TIGR00892       173 RGSFLILGGLLLHCCVCGALM  193 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            999999887766555444433

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.62  E-value=4.8e-14  Score=129.75  Aligned_cols=180  Identities=7%  Similarity=-0.093  Sum_probs=131.1

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i  101 (288)
                      |.+|.+....++...++..+.++++.|+++++|.++.+.+++.+...+...++.++.|+++||+ |||+.++.+.....+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~   80 (396)
T TIGR00882         2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLV   80 (396)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            4567777788888888888889999999999999999999999999999999999999999998 999999887766555


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 023063          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (288)
Q Consensus       102 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (288)
                      +..........+..              .........+.+++.+++.+...+...++..|..+        +++..++..
T Consensus        81 ~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--------~~~~~~g~~  138 (396)
T TIGR00882        81 LFAPFFIYVFGPLL--------------QSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--------NSNFEYGKA  138 (396)
T ss_pred             HHHHHHHHHhhhHH--------------HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--------hcccccchh
Confidence            44332211100000              00022334556677788888877777777666422        234456666


Q ss_pred             HHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHH
Q 023063          182 YFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (288)
Q Consensus       182 ~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~  225 (288)
                      ....++|..++|.+++.+.+ .+|+..|++.+++.++..+..+.
T Consensus       139 ~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~  181 (396)
T TIGR00882       139 RMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMF  181 (396)
T ss_pred             hhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHH
Confidence            77788999999999887755 59999998877766655544333

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.61  E-value=3.8e-15  Score=144.94  Aligned_cols=200  Identities=14%  Similarity=0.155  Sum_probs=148.2

Q ss_pred             cchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHH
Q 023063           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ  100 (288)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~  100 (288)
                      ++.+...+....+......++.......+.++++++..+.+++.+.+.++..++.++.|+++||+ |||+.+.++.+++.
T Consensus        31 ~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~ll~~  109 (633)
T TIGR00805        31 IKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCAIMG  109 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHHHHH
Confidence            34343344434455555556666666777889999999999999999999999999999999998 99999999999999


Q ss_pred             HHHHHHHHHhhcCCCC----------------CCCCCC-----------cccccccc--cchHHHHHHHHHHHHHhccCc
Q 023063          101 IGMICLTISAILPQLR----------------PPPCEG-----------EQVCQEAN--KGQVAILYVSLLLAALGSGGI  151 (288)
Q Consensus       101 i~~~~~~~~~~~p~~~----------------~~~~~~-----------~~~~~~~~--~~~~~~~~~~~~l~g~g~g~~  151 (288)
                      ++.++++++..+..-+                ...|..           ...|....  +..+..+++++++.|+|.+..
T Consensus       110 lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~  189 (633)
T TIGR00805       110 LGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPI  189 (633)
T ss_pred             HHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcc
Confidence            9999988654221000                011210           00222222  224567778999999999999


Q ss_pred             chhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhheeecc----------------------chhhhh
Q 023063          152 RPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNI----------------------GWGWGL  209 (288)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~----------------------g~~~~f  209 (288)
                      .+...+++.|.+|++      +|+...++++.+..+|..+++++++++.+.+                      +|+..|
T Consensus       190 ~~~~~~~i~d~~~~~------~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~F  263 (633)
T TIGR00805       190 FPLGISYIDDFAKSK------NSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGF  263 (633)
T ss_pred             hhcCchhhhccCCcc------ccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHH
Confidence            999999999999988      6999999999999999999999998776432                      277778


Q ss_pred             hHhHHHHHHHHHHHHHhc
Q 023063          210 GIPTFAMFLSIIAFLIGY  227 (288)
Q Consensus       210 ~~~~~~~~~~~i~~~~~~  227 (288)
                      ++.+++.++..+.++...
T Consensus       264 li~g~l~~l~~v~l~~~p  281 (633)
T TIGR00805       264 LICGGVALLTSIPFFFFP  281 (633)
T ss_pred             HHHHHHHHHHHHHHHhCc
Confidence            777766666555444433

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.61  E-value=8.5e-14  Score=129.81  Aligned_cols=178  Identities=13%  Similarity=0.022  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHHHHhHHhhhhhHHHHhHH-hcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 023063           24 MPFIFSNEVCEKLAVVGFNTNMISYLTT-QLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (288)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~  102 (288)
                      .+.+....+..++..+...+.+...+.+ ++|++.+|.+++.+++.+.+.++.+..|++.||+ |.|+++.++.++..+.
T Consensus        35 ~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~~i~  113 (462)
T PRK15034         35 NLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAILIIP  113 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHH
Confidence            3333444555666666666666667655 7999999999999999999999999999999998 9999999999999888


Q ss_pred             HHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHH
Q 023063          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (288)
Q Consensus       103 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (288)
                      ++++.++...                 ...+++.+++.+++.|++ +...+.....+++++|++      +||++.++..
T Consensus       114 ~~~~~~a~~~-----------------~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~------~rG~A~Gi~~  169 (462)
T PRK15034        114 CVWLGIAVQN-----------------PNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKA------KQGSALGING  169 (462)
T ss_pred             HHHHHHHHcc-----------------cCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHh------HhHHHHHHHH
Confidence            8888765200                 012678888999999998 667788889999999987      6999999986


Q ss_pred             HHHHHHHHHHHHhHhhee-----e-------------ccchhhhhhHhHHHHHHHHHHHHHh
Q 023063          183 FVMGAAILVAVTVLVYIQ-----D-------------NIGWGWGLGIPTFAMFLSIIAFLIG  226 (288)
Q Consensus       183 ~~~~~g~~i~~~~~~~l~-----~-------------~~g~~~~f~~~~~~~~~~~i~~~~~  226 (288)
                      ...++|..+++.+.+.+.     .             ..+|+..+++..++.++..+..++.
T Consensus       170 g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~  231 (462)
T PRK15034        170 GLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG  231 (462)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            666666665554443221     1             2346665556555555555444444

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.61  E-value=9.7e-14  Score=127.75  Aligned_cols=178  Identities=10%  Similarity=0.109  Sum_probs=123.6

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHH-HHhhhHHHHHHHHHhccchhHHHH-HHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGG-TGSLTPLIGAFVADAYAGRFWTIT-IASIIY   99 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~G~laDr~~Grr~~i~-~~~~l~   99 (288)
                      ...+..++..++.+.+...+.+.++.|+.+++|.++++.+++.+...+ ...++++++|+ +||+ ||||.++ .+.++.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~~   92 (393)
T PRK15011         15 LTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLLG   92 (393)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHHH
Confidence            345556667888888888888999999999999999999998776655 45555555666 9998 9988754 444544


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHH-HHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHH
Q 023063          100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVS-LLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  178 (288)
Q Consensus       100 ~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (288)
                      .++..+..++.                      +.+.+++. +++.+.+ +...+...++..|..+++++    ..+...
T Consensus        93 ~~~~~~~~~~~----------------------~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~  145 (393)
T PRK15011         93 VLACTLFAWNR----------------------NYFVLLFVGVFLSSFG-STANPQMFALAREHADKTGR----EAVMFS  145 (393)
T ss_pred             HHHHHHHHHhh----------------------HHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHhhhccc----hHHHHH
Confidence            45555555443                      44444433 3334443 45566667777776654420    123445


Q ss_pred             HHHHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHHhcc
Q 023063          179 NWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYP  228 (288)
Q Consensus       179 ~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~~~  228 (288)
                      +..+.+.++|..++|.+++++.+++||+..|++.++..++..+..+...+
T Consensus       146 ~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~  195 (393)
T PRK15011        146 SFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLP  195 (393)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcC
Confidence            67888999999999999999998899999998887766555554444333

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.61  E-value=3.1e-14  Score=133.44  Aligned_cols=154  Identities=14%  Similarity=0.107  Sum_probs=120.8

Q ss_pred             hHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCc
Q 023063           44 NMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGE  123 (288)
Q Consensus        44 ~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~  123 (288)
                      ....|+.++ |++..+.+++.+...++..+++++.|+++||+ |||++++.+.++..++.+.+.+...            
T Consensus        50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~~------------  115 (452)
T PRK11273         50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPW------------  115 (452)
T ss_pred             HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhhc------------
Confidence            344577777 99999999999999999999999999999998 9999999999988888877765430            


Q ss_pred             ccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHH-HHHhHhheeec
Q 023063          124 QVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILV-AVTVLVYIQDN  202 (288)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i-~~~~~~~l~~~  202 (288)
                            ...+.+.+++.+++.|++.+...+.....+.|++|++      +|++..++++.+.++|+.+ +|.....+...
T Consensus       116 ------~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~  183 (452)
T PRK11273        116 ------ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGLPPLLFLLGMAWF  183 (452)
T ss_pred             ------ccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChH------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence                  0114566778888999999988888888899999887      6999999999999998754 55443333333


Q ss_pred             cchhhhhhHhHHHHHHHHHHH
Q 023063          203 IGWGWGLGIPTFAMFLSIIAF  223 (288)
Q Consensus       203 ~g~~~~f~~~~~~~~~~~i~~  223 (288)
                      .||+..|++.++..++..+..
T Consensus       184 ~gw~~~f~i~~~~~~~~~~l~  204 (452)
T PRK11273        184 NDWHAALYMPAFAAILVALFA  204 (452)
T ss_pred             ccHHHHHHHHHHHHHHHHHHH
Confidence            489999988776655544333

>PRK09952 shikimate transporter; Provisional

Probab=99.61  E-value=5.7e-14  Score=131.22  Aligned_cols=176  Identities=10%  Similarity=0.068  Sum_probs=123.3

Q ss_pred             CcchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhc--CCCHHHHHHHH-----HHHHHHHhhhHHHHHHHHHhccchhHHH
Q 023063           20 GMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQL--HMPLTKAANTL-----TNFGGTGSLTPLIGAFVADAYAGRFWTI   92 (288)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~--~~~~~~~~~~~-----~~~~~~~~i~~~~~G~laDr~~Grr~~i   92 (288)
                      +++..+...+..+++.+-...+....+.+..+++  +.++.+ +.+.     .+..++..++.++.|+++||+ |||+++
T Consensus        20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~~l   97 (438)
T PRK09952         20 ARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKRML   97 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHHHH
Confidence            3455555555556555544443333444555554  566654 3332     233455667888899999998 999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhh
Q 023063           93 TIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQAT  172 (288)
Q Consensus        93 ~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~  172 (288)
                      .++.+++.++++++.++..+...              .......+.+.|+++|++.|...+...+++.|.+|++      
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~------  157 (438)
T PRK09952         98 MLTVWMMGIATALIGLLPSFSTI--------------GWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKN------  157 (438)
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHH--------------HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCC------
Confidence            99999999999888876511000              0001225778899999999999999999999999987      


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhHhhee--------eccchhhhhhHhHHHHH
Q 023063          173 KTWKYFNWYYFVMGAAILVAVTVLVYIQ--------DNIGWGWGLGIPTFAMF  217 (288)
Q Consensus       173 ~~~~~~~~~~~~~~~g~~i~~~~~~~l~--------~~~g~~~~f~~~~~~~~  217 (288)
                      +|+...+..+.+..+|..++..+...+.        +.+|||..|++.++..+
T Consensus       158 ~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l  210 (438)
T PRK09952        158 KKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVL  210 (438)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHH
Confidence            6899888888888899888876665443        35799999987766543

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.60  E-value=5.4e-14  Score=133.24  Aligned_cols=174  Identities=17%  Similarity=0.120  Sum_probs=123.0

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCC--HHH--HHH--HHHHHHHHHhhhHHHHHHHHHhccchhHHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMP--LTK--AAN--TLTNFGGTGSLTPLIGAFVADAYAGRFWTITIA   95 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~--~~~--~~~--~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~   95 (288)
                      +.+....+..+++.+-+.. ..+...++.++++.+  +..  .+.  +.+...++..++.+++|+++||+ |||+++.++
T Consensus        16 ~~~~~~~~g~~~~~~d~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~~   93 (490)
T PRK10642         16 KAITAASLGNAMEWFDFGV-YGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAIT   93 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHH
Confidence            3444444555666554443 344556777777533  221  111  13566678889999999999998 999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhh
Q 023063           96 SIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTW  175 (288)
Q Consensus        96 ~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (288)
                      ++++.+++++++++..+...              ..-.+.++++.|+++|+|.|+..+...++++|.+|++      +|+
T Consensus        94 ~~l~~i~~~~~a~~~~~~~~--------------g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~------~Rg  153 (490)
T PRK10642         94 IVIMSISTFCIGLIPSYATI--------------GIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDR------KRG  153 (490)
T ss_pred             HHHHHHHHHHHHhcccHHHH--------------HHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCC------CCc
Confidence            99999999998876511000              0000124788899999999999999999999999987      699


Q ss_pred             hHHHHHHHHHHHHHHHHHHhHhhee--------eccchhhhhhHhHHHHH
Q 023063          176 KYFNWYYFVMGAAILVAVTVLVYIQ--------DNIGWGWGLGIPTFAMF  217 (288)
Q Consensus       176 ~~~~~~~~~~~~g~~i~~~~~~~l~--------~~~g~~~~f~~~~~~~~  217 (288)
                      ...++...+..+|..+++.+...+.        ..+|||+.|++.++..+
T Consensus       154 ~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l  203 (490)
T PRK10642        154 FMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGI  203 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHH
Confidence            9999888888888877775543321        25799999988665433

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.59  E-value=1.1e-13  Score=131.56  Aligned_cols=144  Identities=17%  Similarity=0.179  Sum_probs=115.4

Q ss_pred             CCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccch
Q 023063           54 HMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQ  133 (288)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  133 (288)
                      +.+..+.+++.+...++..++.+++|+++||+ |||+++.++.++..++.++..++..   .             ....+
T Consensus        52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~~~~~~~v~~~~~~~~~~---~-------------~~~~~  114 (502)
T TIGR00887        52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGMELIIMIIATVASGLSPG---S-------------SPKSV  114 (502)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHccC---c-------------ccchH
Confidence            34566778899999999999999999999998 9999999999999998887776440   0             00013


Q ss_pred             HHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhheee------------
Q 023063          134 VAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQD------------  201 (288)
Q Consensus       134 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~------------  201 (288)
                      ...++++|++.|++.|+..+..+.+++|.+|++      +|++..+..+....+|..+++.+...+..            
T Consensus       115 ~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~------~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~  188 (502)
T TIGR00887       115 MATLCFWRFWLGVGIGGDYPLSAIITSEFATKK------WRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADE  188 (502)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence            567889999999999999999999999999998      69999999999999999888877654321            


Q ss_pred             -----------ccchhhhhhHhHHHHHHHH
Q 023063          202 -----------NIGWGWGLGIPTFAMFLSI  220 (288)
Q Consensus       202 -----------~~g~~~~f~~~~~~~~~~~  220 (288)
                                 ..+||..|.+.++..++..
T Consensus       189 ~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~  218 (502)
T TIGR00887       189 ASCTGSCVPAVDYMWRILIGFGAVPALLAL  218 (502)
T ss_pred             ccccccccchhcccHHHHHHHHHHHHHHHH
Confidence                       2379998876655444433

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK03699 putative transporter; Provisional

Probab=99.59  E-value=7.3e-14  Score=128.54  Aligned_cols=171  Identities=16%  Similarity=0.135  Sum_probs=131.1

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i  101 (288)
                      +.++.+.+..++...+.+++..++|.|+++++|++..+++.+.+.+.++..++.+++|+++||+ |||+.+..+..+..+
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~  283 (394)
T PRK03699        205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALV  283 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHH
Confidence            3455555566666677788889999999999999999999999999999999999999999998 999988877766555


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 023063          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (288)
Q Consensus       102 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (288)
                      +..+.....                      +...+.+..++.|++.+...+...++..|..+.+       ++...+..
T Consensus       284 ~~~~~~~~~----------------------~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~  334 (394)
T PRK03699        284 LMYLFVNTD----------------------DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-------SPKLVNFI  334 (394)
T ss_pred             HHHHHHHcC----------------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CHHHHHHH
Confidence            544443222                      2333444556677777777777777778877653       45567777


Q ss_pred             HHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHH
Q 023063          182 YFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIA  222 (288)
Q Consensus       182 ~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~  222 (288)
                      ....++|..++|.+.|++.+..|++..+++..++.+++.+.
T Consensus       335 ~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~  375 (394)
T PRK03699        335 LTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVM  375 (394)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHH
Confidence            78889999999999999999899998888777766665543

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.59  E-value=4.6e-14  Score=131.74  Aligned_cols=156  Identities=12%  Similarity=0.079  Sum_probs=125.1

Q ss_pred             HHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcc
Q 023063           45 MISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQ  124 (288)
Q Consensus        45 l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~  124 (288)
                      ...++++ .|+++.+.+++.+.+.++..++.++.|+++||+ |||+.+..+.++..++.+......   +.         
T Consensus        49 ~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~---~~---------  114 (438)
T TIGR00712        49 AMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLLMGFVP---WA---------  114 (438)
T ss_pred             hhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHHHhccc---cc---------
Confidence            3446665 599999999999999999999999999999998 999999999888888877665432   10         


Q ss_pred             cccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhh-eeecc
Q 023063          125 VCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVY-IQDNI  203 (288)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~-l~~~~  203 (288)
                            ..+...+.+.+++.|++.+...+.....+.|.+|++      +|++++++++.+.++|+.+++.+.+. +....
T Consensus       115 ------~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~------~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~  182 (438)
T TIGR00712       115 ------TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQS------ERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFN  182 (438)
T ss_pred             ------cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcc------cchhHHHHHHHHHHhHhHHHHHHHHHHHHHhh
Confidence                  114566777888999999998888889999999987      69999999999999999999877764 44456


Q ss_pred             chhhhhhHhHHHHHHHHHHHHHh
Q 023063          204 GWGWGLGIPTFAMFLSIIAFLIG  226 (288)
Q Consensus       204 g~~~~f~~~~~~~~~~~i~~~~~  226 (288)
                      +|+..|++.+++.++..+..++.
T Consensus       183 ~w~~~f~~~~~~~~i~~~~~~~~  205 (438)
T TIGR00712       183 DWHAALYFPAICAIIVALFAFAM  205 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHh
Confidence            89999988777766655444333

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.58  E-value=9.1e-14  Score=128.94  Aligned_cols=182  Identities=7%  Similarity=-0.087  Sum_probs=119.7

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i  101 (288)
                      +..|.+....++...++..+.++++.|+++++|+++.+.+++.+...+...+++++.|+++||+ |||++++++..+..+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~~   88 (420)
T PRK09528         10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLLV   88 (420)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence            4666666777777787878889999999999999999999999999999999999999999998 999999887665554


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 023063          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (288)
Q Consensus       102 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (288)
                      +..........+..              .........++.++.+.+.....+....+. +..++       +++..++..
T Consensus        89 ~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~g~~~g~~  146 (420)
T PRK09528         89 LFGPFFIYVFAPLL--------------QYNILLGAIVGGIYLGFGFLAGAGAIEAYI-ERVSR-------RSGFEYGRA  146 (420)
T ss_pred             HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhhhhhccchhhhhhHH-HHHHh-------hccccchhh
Confidence            44322211100000              000011111222222322222222222222 11111       466677777


Q ss_pred             HHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHHhc
Q 023063          182 YFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGY  227 (288)
Q Consensus       182 ~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~~  227 (288)
                      ....++|..++|.+++.+.+ .+|+..|++.++..++.++..+...
T Consensus       147 ~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~  191 (420)
T PRK09528        147 RMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAK  191 (420)
T ss_pred             HHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhccc
Confidence            78889999999999998865 4888888887766665555554443

>PRK09952 shikimate transporter; Provisional

Probab=99.58  E-value=1.7e-13  Score=128.06  Aligned_cols=181  Identities=15%  Similarity=0.102  Sum_probs=127.5

Q ss_pred             cchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHH
Q 023063           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ  100 (288)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~  100 (288)
                      ++....+....++..+.+|....+.+.|+++.+|++......+.........++.++.|+++||+ |||+.+..+.++..
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~~~  327 (438)
T PRK09952        249 PGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALIGT  327 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHH
Confidence            33344444566677788888889999999999999887765555566667788889999999998 99999888776655


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 023063          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (288)
Q Consensus       101 i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (288)
                      ++.+.+.....                  .....+...+..++.+++.+...+...++++|.+|++      .|+...++
T Consensus       328 ~~~~~~~~~~~------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~------~r~tg~g~  383 (438)
T PRK09952        328 LSAFPFFMALE------------------AQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGAS------YRYSGAGV  383 (438)
T ss_pred             HHHHHHHHHHH------------------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcc------hhHHHHhH
Confidence            54433332210                  0112333344455667777777788889999999997      58877777


Q ss_pred             H-HHHHHHHHHHHHHhHhheeecc--chhhhhhHhHHHHHHHHHHHHHh
Q 023063          181 Y-YFVMGAAILVAVTVLVYIQDNI--GWGWGLGIPTFAMFLSIIAFLIG  226 (288)
Q Consensus       181 ~-~~~~~~g~~i~~~~~~~l~~~~--g~~~~f~~~~~~~~~~~i~~~~~  226 (288)
                      . +.+..+|+.++|.+.+++.+..  +|...+.+..+..+++.+..+..
T Consensus       384 ~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~  432 (438)
T PRK09952        384 GYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM  432 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence            4 4455689999999999987744  37777776666666665555443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.58  E-value=2.1e-13  Score=127.24  Aligned_cols=172  Identities=14%  Similarity=0.099  Sum_probs=120.5

Q ss_pred             CcchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHH-HHHHH-----HHHhhhHHHHHHHHHhccchhHHHH
Q 023063           20 GMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANT-LTNFG-----GTGSLTPLIGAFVADAYAGRFWTIT   93 (288)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~-~~~~~-----~~~~i~~~~~G~laDr~~Grr~~i~   93 (288)
                      +++....+.+..+++.+-...+. .....+.++++.++.+.+.. .+...     +...++.++.|+++||+ ||||.++
T Consensus        13 ~~~~~~~~~~~~~~~~~d~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~   90 (434)
T PRK15075         13 KARAILRVTSGNFLEMFDFFLFG-FYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKGLI   90 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHHHH
Confidence            33444444555555555554443 44457778888877665433 22222     22246788999999998 9999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhh
Q 023063           94 IASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATK  173 (288)
Q Consensus        94 ~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  173 (288)
                      .+..++.++.+++.++..+...              .......+++.|++.|++.+...+...++++|.+|++      +
T Consensus        91 ~~~~~~~~~~~l~~~~~~~~~~--------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~------~  150 (434)
T PRK15075         91 VTLSIMASGTLLIAFVPGYATI--------------GLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPG------R  150 (434)
T ss_pred             HHHHHHHHHHHHHHhCCcHHHH--------------HHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcc------c
Confidence            9999999999888875510000              0000124678899999999999998899999999988      6


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhHhhe--------eeccchhhhhhHhH
Q 023063          174 TWKYFNWYYFVMGAAILVAVTVLVYI--------QDNIGWGWGLGIPT  213 (288)
Q Consensus       174 ~~~~~~~~~~~~~~g~~i~~~~~~~l--------~~~~g~~~~f~~~~  213 (288)
                      |++..++...+.++|..+++.+++.+        .+.+|||..|++..
T Consensus       151 rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~  198 (434)
T PRK15075        151 KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGC  198 (434)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHH
Confidence            99999998888777777777666554        24679999998654

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.58  E-value=1.6e-13  Score=126.85  Aligned_cols=152  Identities=9%  Similarity=0.024  Sum_probs=131.8

Q ss_pred             hhHHHHhHHhcCCCHHH-HHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 023063           43 TNMISYLTTQLHMPLTK-AANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCE  121 (288)
Q Consensus        43 ~~l~~yl~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~  121 (288)
                      ++...|+.+++|+++.+ .+.+.+.+..++.++.+++|+++||+ |-|+++.++.+...+..+++.++.           
T Consensus        46 s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~t~L~~fa~-----------  113 (511)
T TIGR00806        46 SFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCVWLLLLLGT-----------  113 (511)
T ss_pred             HHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHH-----------
Confidence            45667888999999999 99999999999999999999999998 999999999999999999999876           


Q ss_pred             CcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhheee
Q 023063          122 GEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQD  201 (288)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~  201 (288)
                                 +...+.+.|++.|++.|... ....++..++|++      +|+++.++...+..+|.+++++++++ ..
T Consensus       114 -----------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~k------ER~ratsi~~sg~~vG~~Ia~~L~ql-l~  174 (511)
T TIGR00806       114 -----------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPS------RYQRAAAYSRAAVLLGVFLSSVLGQL-LV  174 (511)
T ss_pred             -----------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence                       67889999999999999999 8899999999988      79999999999999999999999998 45


Q ss_pred             ccchhhh---hhHhHHHHHHHHHHHHH
Q 023063          202 NIGWGWG---LGIPTFAMFLSIIAFLI  225 (288)
Q Consensus       202 ~~g~~~~---f~~~~~~~~~~~i~~~~  225 (288)
                      .+||+.-   .++......++++.-++
T Consensus       175 s~gWr~y~~Ln~Isl~s~~~a~~~a~~  201 (511)
T TIGR00806       175 TLGWISYSTLNIISLVFMTFSVFLALF  201 (511)
T ss_pred             hcCchhHHHHHHHHHHHHHHHHHHHHh
Confidence            6788753   34444445555444333

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.57  E-value=1.3e-13  Score=124.36  Aligned_cols=188  Identities=13%  Similarity=0.061  Sum_probs=152.3

Q ss_pred             CcchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHH
Q 023063           20 GMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIY   99 (288)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~   99 (288)
                      +.|.++. ....+..++..+...+.+..++++++|+|+.|.+++..+..+.+.+..++-|.+.||+ |.|++..+++++.
T Consensus        12 ~~~~L~~-S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~l~   89 (417)
T COG2223          12 ARRNLWL-STLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSMLLL   89 (417)
T ss_pred             hhHHHHH-HHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHHHH
Confidence            3444543 3456666777778888899999999999999999999999999999999999999998 9999999999988


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHH
Q 023063          100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (288)
Q Consensus       100 ~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (288)
                      .+-.+...++.                   ++.+.+.+++..++.|++.+. +++..+++++.||++      +.|.+.+
T Consensus        90 ~IP~~~~~~a~-------------------~~~~~~~ll~~gll~G~~Gas-Fav~m~~~s~~fP~~------~qG~AlG  143 (417)
T COG2223          90 LIPCLGLAFAV-------------------TYPSTWQLLVIGLLLGLAGAS-FAVGMPNASFFFPKE------KQGLALG  143 (417)
T ss_pred             HHHHHHHHHHc-------------------cCCchHHHHHHHHHHhcccce-ehcccccccccCChh------hhhHHHH
Confidence            88888888877                   233446777777888887554 456678899999998      6999999


Q ss_pred             HHHHHHHHHHHHHHHhHhheeeccc---hhhhhhHhHHHHHHHHHHHHHhccceeecCCC
Q 023063          180 WYYFVMGAAILVAVTVLVYIQDNIG---WGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPA  236 (288)
Q Consensus       180 ~~~~~~~~g~~i~~~~~~~l~~~~g---~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~  236 (288)
                      ++. ..|+|..+...+++.+....|   |+....+..+..++..+.+++..++.+..++.
T Consensus       144 I~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~  202 (417)
T COG2223         144 IAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRAS  202 (417)
T ss_pred             Hhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcc
Confidence            988 899999999999998888888   88888888777777777777766655443333

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.57  E-value=1.7e-13  Score=125.97  Aligned_cols=170  Identities=12%  Similarity=0.094  Sum_probs=130.0

Q ss_pred             HHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhh
Q 023063           32 VCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAI  111 (288)
Q Consensus        32 ~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~  111 (288)
                      .+..+++.....+++.|+.+ .|++  +.+.....+.++..++.++.|++.||+ |||+.+..+..+..++.+...... 
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~-  300 (399)
T PRK05122        226 ALASIGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLAP-  300 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhc-
Confidence            33455566666778888764 4653  345556677778888899999999998 999999888887777776665543 


Q ss_pred             cCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHH
Q 023063          112 LPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILV  191 (288)
Q Consensus       112 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i  191 (288)
                                           +.+.+.+..++.|++.+...+.......|.+|++      +|++..++++...++|..+
T Consensus       301 ---------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~g~~~  353 (399)
T PRK05122        301 ---------------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQ------NRGAALGAYSVFLDLSLGI  353 (399)
T ss_pred             ---------------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHH
Confidence                                 4455666778889988887877777788888776      7999999999999999999


Q ss_pred             HHHhHhheeeccchhhhhhHhHHHHHHHHHHHHHhccceeec
Q 023063          192 AVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNL  233 (288)
Q Consensus       192 ~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~  233 (288)
                      ++.+.+++.+..||+..|.+.+++.+++++......++.+++
T Consensus       354 ~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (399)
T PRK05122        354 TGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRAPRA  395 (399)
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            999999998888999999888877777766655554444333

>TIGR00898 2A0119 cation transport protein

Probab=99.56  E-value=6.2e-14  Score=132.96  Aligned_cols=145  Identities=16%  Similarity=0.232  Sum_probs=125.2

Q ss_pred             HhHHhcCCC---HHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcc
Q 023063           48 YLTTQLHMP---LTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQ  124 (288)
Q Consensus        48 yl~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~  124 (288)
                      .+.++++++   ..+.++..+.+.++..++.++.|+++||+ |||++++++.++..++.++..++.              
T Consensus       114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~~--------------  178 (505)
T TIGR00898       114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFSP--------------  178 (505)
T ss_pred             cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHcc--------------
Confidence            456788998   89999999999999999999999999998 999999999999988888887765              


Q ss_pred             cccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhheeeccc
Q 023063          125 VCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIG  204 (288)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g  204 (288)
                              +++.+++.+++.|++.+...+...+++.|.+|++      +|+...+....+..+|..+++.++..+.   +
T Consensus       179 --------~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~~~---~  241 (505)
T TIGR00898       179 --------NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKK------QRAIVGTLIQVFFSLGLVLLPLVAYFIP---D  241 (505)
T ss_pred             --------cHHHHHHHHHHHHhhccchHHHHHHHhheecChh------hhHHHHHHHHHHHHHHHHHHHHHHHHhh---H
Confidence                    6788899999999999999999999999999987      6899999888899999999998876654   3


Q ss_pred             hhhhhhHhHHHHHHHHHHHH
Q 023063          205 WGWGLGIPTFAMFLSIIAFL  224 (288)
Q Consensus       205 ~~~~f~~~~~~~~~~~i~~~  224 (288)
                      |++.|++.++..++..+..+
T Consensus       242 wr~~~~~~~i~~~~~~~~~~  261 (505)
T TIGR00898       242 WRWLQLAVSLPTFLFFLLSW  261 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99988887766655554443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.56  E-value=2.8e-13  Score=122.97  Aligned_cols=165  Identities=12%  Similarity=0.059  Sum_probs=125.8

Q ss_pred             HHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHh
Q 023063           31 EVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISA  110 (288)
Q Consensus        31 ~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~  110 (288)
                      .++..........+++.|+.+++|.++.+.+.+.....+...++.+++|+++||+ |||+.+.++.++..+..+......
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~  286 (375)
T TIGR00899       208 CTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFYTGLAADN  286 (375)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHHH
Confidence            3333333444556788899889999999999888777777778889999999998 999998887765555444333322


Q ss_pred             hcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHH
Q 023063          111 ILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAIL  190 (288)
Q Consensus       111 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  190 (288)
                                            +.+.+.+..++.+++.+...+...++..|..|++       +++..+.++...++|..
T Consensus       287 ----------------------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~  337 (375)
T TIGR00899       287 ----------------------SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-------AGAATTLYTNTGRVGWI  337 (375)
T ss_pred             ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-------hhHHHHHHHHHHHHHHH
Confidence                                  4455556667778887777777778888888753       67889999999999999


Q ss_pred             HHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHH
Q 023063          191 VAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (288)
Q Consensus       191 i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~  225 (288)
                      ++|.+.+.+.+..||+..|++.+++.+++.+....
T Consensus       338 ~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  372 (375)
T TIGR00899       338 IAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL  372 (375)
T ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence            99999999988889999998888777666655443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.56  E-value=3.7e-13  Score=120.11  Aligned_cols=172  Identities=20%  Similarity=0.260  Sum_probs=146.7

Q ss_pred             HHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhH-HHHHHHHHHHHH
Q 023063           24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFW-TITIASIIYQIG  102 (288)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~-~i~~~~~l~~i~  102 (288)
                      ++...+..++..........+.+.|+.+.+|.+..+.+.......++..++.++.|+++||+ |||+ .+..+..+..++
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~  255 (352)
T cd06174         177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAALG  255 (352)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHH
Confidence            33444455666667777778888898887899999999999999999999999999999998 9999 999999888888


Q ss_pred             HHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHH
Q 023063          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (288)
Q Consensus       103 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (288)
                      .+......                      +.+...+..++.+++.+...+...+++.|..|++      +|++.++..+
T Consensus       256 ~~~~~~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  307 (352)
T cd06174         256 LLLLALAP----------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPE------ARGTASGLFN  307 (352)
T ss_pred             HHHHHHhc----------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHH------HHHHHHHHHH
Confidence            87777654                      4566777888899999999999999999999976      6999999999


Q ss_pred             HHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHH
Q 023063          183 FVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFL  224 (288)
Q Consensus       183 ~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~  224 (288)
                      ...++|..+++.+.+.+.+..+|+..|.+.+++.+++.+...
T Consensus       308 ~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         308 TFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL  349 (352)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence            999999999999999999888999999888887766665443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.55  E-value=1.1e-13  Score=125.82  Aligned_cols=168  Identities=14%  Similarity=0.038  Sum_probs=126.6

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i  101 (288)
                      +.++......++....++....+++.|+++++|.+..+.+.......+...++.+++|+++||+ |||+.+..+..+..+
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~  297 (394)
T TIGR00883       219 KPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVLAAL  297 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHH
Confidence            3456666667777788888888999999888999999999999899999999999999999998 999987765544443


Q ss_pred             HHH-HHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 023063          102 GMI-CLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (288)
Q Consensus       102 ~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (288)
                      ..+ ......                   ...+.+.+.+..++.+++.+...+...+++.|.+|++      +|++..+.
T Consensus       298 ~~~~~~~~~~-------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~------~~~~~~~~  352 (394)
T TIGR00883       298 LAVPLLMALL-------------------DSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTE------VRYTGASL  352 (394)
T ss_pred             HHHHHHHHHh-------------------cCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCcc------ceeeEeee
Confidence            332 221111                   0113455556667778888888888999999999987      58888886


Q ss_pred             -HHHHHHHHHHHHHHhHhheeeccc-hhhhhhHhHHH
Q 023063          181 -YYFVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFA  215 (288)
Q Consensus       181 -~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~~~~~~  215 (288)
                       ++.+..+|..++|.+.+++.++.| |+..++...+.
T Consensus       353 ~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~  389 (394)
T TIGR00883       353 AYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAAL  389 (394)
T ss_pred             hhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHH
Confidence             456667899999999999988888 77655554443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.55  E-value=2.5e-14  Score=127.71  Aligned_cols=165  Identities=15%  Similarity=0.089  Sum_probs=142.0

Q ss_pred             hcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccc
Q 023063           52 QLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANK  131 (288)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  131 (288)
                      .++-++.+.|++.....+...+..++.|.+.||+ |+|-.+++|+.++...++++++..                     
T Consensus       100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg~---------------------  157 (464)
T KOG3764|consen  100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFGN---------------------  157 (464)
T ss_pred             CccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHcc---------------------
Confidence            3556788999999999999999999999999998 999999999999999999999877                     


Q ss_pred             chHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhheeeccchhhhhhH
Q 023063          132 GQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGI  211 (288)
Q Consensus       132 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~  211 (288)
                       ++++++++|.++|+|.++......++++|.||++.     +|++++|+......+|-.+||.++|.+.+..|++.+|.+
T Consensus       158 -sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~-----er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlV  231 (464)
T KOG3764|consen  158 -SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDN-----ERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLV  231 (464)
T ss_pred             -hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccch-----hhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHH
Confidence             67889999999999999999999999999999986     899999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhccce--ee-cCCCCChhhHHH
Q 023063          212 PTFAMFLSIIAFLIGYPLY--RN-LDPAGSPFTRLL  244 (288)
Q Consensus       212 ~~~~~~~~~i~~~~~~~~~--~~-~~~~~~~~~~~~  244 (288)
                      .+++.++...+-++..+..  ++ +.+++.+..++.
T Consensus       232 L~~v~Lld~~L~l~vi~p~~~~~~~~~~~~~~~~Ll  267 (464)
T KOG3764|consen  232 LAIVLLLDGALQLLVIEPTEMDPDSTEQGTPMWSLL  267 (464)
T ss_pred             HHHHHHHHHHHHHheeCccccCccccccCccHHHHH
Confidence            9988877666555444322  22 233444554443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.54  E-value=8.6e-13  Score=121.52  Aligned_cols=177  Identities=11%  Similarity=-0.000  Sum_probs=134.4

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i  101 (288)
                      +..+.+.+..++...+++++..++|.|+.+ +|++..+++...+.+.++..++.++.|+++||+ |||+.+..+..+..+
T Consensus       205 ~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~  282 (393)
T PRK09705        205 PRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLV  282 (393)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHH
Confidence            445555556666778888888999999976 799999999999999999999999999999998 999999888877777


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 023063          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (288)
Q Consensus       102 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (288)
                      +.+.+....                   .  +....  ..++.+++.+...+.......|.+++++     ++++.++..
T Consensus       283 ~~~~~~~~~-------------------~--~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~-----~~g~~~g~~  334 (393)
T PRK09705        283 GFCGFIWLP-------------------L--QLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPA-----IAGKLVAFM  334 (393)
T ss_pred             HHHHHHHcc-------------------c--hHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHH-----HHHHHHHHH
Confidence            665443222                   0  11111  1235577777777777767777775432     689999999


Q ss_pred             HHHHHHHHHHHHHhHhheeeccc-hhhhhhHhHHHHHHHHHHHHHhcc
Q 023063          182 YFVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLSIIAFLIGYP  228 (288)
Q Consensus       182 ~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~i~~~~~~~  228 (288)
                      +...++++.++|.+.|++.+..| |...|.+.++..+...+......+
T Consensus       335 ~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  382 (393)
T PRK09705        335 QGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAP  382 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999876 777787777666666555554443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.54  E-value=3.1e-13  Score=122.02  Aligned_cols=170  Identities=12%  Similarity=0.069  Sum_probs=130.9

Q ss_pred             hHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 023063           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (288)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~  102 (288)
                      ..+.+....++..........+.+.|. +++|.++.+.+.+.....+...++.++.|+++||+ |||+.+.++..+..++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~  283 (377)
T TIGR00890       206 QFWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAVG  283 (377)
T ss_pred             cHHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHH
Confidence            344444444555555555555666675 46889999999999999999999999999999998 9999999888888877


Q ss_pred             HHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHH
Q 023063          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (288)
Q Consensus       103 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (288)
                      .++.....                    ......+....++.+++.+...+..++++.|.+|++      +|++..+.++
T Consensus       284 ~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~------~~~~~~g~~~  337 (377)
T TIGR00890       284 MAAMLFIP--------------------MLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPA------NSAANYGFLY  337 (377)
T ss_pred             HHHHHHcc--------------------cchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhh------hhhhHhHHHH
Confidence            76655433                    002223334456677788877777888999999987      6999999999


Q ss_pred             HHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHH
Q 023063          183 FVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSI  220 (288)
Q Consensus       183 ~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~  220 (288)
                      ...++|..++|.+.+.+.+..||+..|.+.+++.++++
T Consensus       338 ~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       338 TAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence            99999999999999999998999998888776655543

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.54  E-value=3.6e-13  Score=126.11  Aligned_cols=157  Identities=15%  Similarity=0.193  Sum_probs=140.1

Q ss_pred             hcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccc
Q 023063           52 QLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANK  131 (288)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  131 (288)
                      +++++..+.+++.+.+..+..+++..+|+++||+ |-|+++..+.++..+++++..++...                   
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~~-------------------  126 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAASI-------------------  126 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence            5789999999999999999999999999999998 99999999999999999999988721                   


Q ss_pred             chHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhheeec-cchhhhhh
Q 023063          132 GQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN-IGWGWGLG  210 (288)
Q Consensus       132 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~-~g~~~~f~  210 (288)
                       ..+.+++.|+++|++.|...+.+..+.+.+.|++      +|+++.+..+.+..+|.+++-.++|++.+. .||+.+|+
T Consensus       127 -~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~------Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY  199 (466)
T KOG2532|consen  127 -GFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPN------ERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFY  199 (466)
T ss_pred             -cchhhHHHHHHhHHHHhHHHhhhhceeeeECCHH------HHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHH
Confidence             3346788899999999999999999999999998      699999999999999999999999999988 99999999


Q ss_pred             HhHHHHHHHHHHHHHhccceeecCC
Q 023063          211 IPTFAMFLSIIAFLIGYPLYRNLDP  235 (288)
Q Consensus       211 ~~~~~~~~~~i~~~~~~~~~~~~~~  235 (288)
                      +.+++.++..++++....+.+.+++
T Consensus       200 ~~g~~g~i~~~~w~~~~~d~P~~h~  224 (466)
T KOG2532|consen  200 VFGIVGLIWFILWFLFYSDSPSKHP  224 (466)
T ss_pred             HHHHHHHHHHHHHHHHhcCCcccCC
Confidence            9999888877777776655444443

>TIGR00896 CynX cyanate transporter

Probab=99.54  E-value=1.4e-13  Score=124.64  Aligned_cols=145  Identities=12%  Similarity=0.168  Sum_probs=118.4

Q ss_pred             hhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 023063           43 TNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEG  122 (288)
Q Consensus        43 ~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~  122 (288)
                      ..+...+.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+.. ...            
T Consensus        20 ~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~~------------   85 (355)
T TIGR00896        20 GPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SAP------------   85 (355)
T ss_pred             cccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hhc------------
Confidence            3344456678999999999999999999999999999999998 99999999988877776655 333            


Q ss_pred             cccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhheeec
Q 023063          123 EQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN  202 (288)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~  202 (288)
                                +.+.+++.+++.|+|.+...+..+.++.|.+++       +|++..+.++.+.++|..+++.+.+.+.+.
T Consensus        86 ----------~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~  148 (355)
T TIGR00896        86 ----------GTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-------RVGLMTGLYSMALMGGAALAAAATVPLAQH  148 (355)
T ss_pred             ----------cHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                      456777889999999988777788888888864       589999999999999999999988887665


Q ss_pred             c--chhhhhhHhHHHHHH
Q 023063          203 I--GWGWGLGIPTFAMFL  218 (288)
Q Consensus       203 ~--g~~~~f~~~~~~~~~  218 (288)
                      .  +|+..|.+.++..++
T Consensus       149 ~~~~w~~~f~~~~~~~~~  166 (355)
T TIGR00896       149 SGGHWQQALAWWALPALL  166 (355)
T ss_pred             hhhhHHHHHHHHHHHHHH
Confidence            4  388887766554433

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.54  E-value=5.8e-13  Score=120.62  Aligned_cols=153  Identities=13%  Similarity=0.122  Sum_probs=113.5

Q ss_pred             HHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhc----cchhHHH-HHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 023063           45 MISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAY----AGRFWTI-TIASIIYQIGMICLTISAILPQLRPPP  119 (288)
Q Consensus        45 l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~----~Grr~~i-~~~~~l~~i~~~~~~~~~~~p~~~~~~  119 (288)
                      +|.++ +++|++.++.++.... .+...+ .++.|+++||+    +||||.+ +.+.++..+.+..+.+..         
T Consensus        11 ~~~~~-~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~---------   78 (356)
T TIGR00901        11 LPYWL-RSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV---------   78 (356)
T ss_pred             HHHHH-HHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC---------
Confidence            44454 5789999999988655 333333 88999999997    4899975 555666656555554432         


Q ss_pred             CCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhhe
Q 023063          120 CEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYI  199 (288)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l  199 (288)
                                +..+.+.+....++.+++.+...+...++++|.+|++      +|+++.++...+.++|..+++.+++.+
T Consensus        79 ----------~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~------~r~~~~~~~~~~~~~G~~~~~~l~~~l  142 (356)
T TIGR00901        79 ----------PSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDE------ELGYGSTIYIVGYRAGMLLSGSLALVL  142 (356)
T ss_pred             ----------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHh------hhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      1124445555555667777888888899999999877      699999999999999999999999988


Q ss_pred             eeccc--------hhhhhhHhHHHHHHHHHHHHH
Q 023063          200 QDNIG--------WGWGLGIPTFAMFLSIIAFLI  225 (288)
Q Consensus       200 ~~~~g--------~~~~f~~~~~~~~~~~i~~~~  225 (288)
                      .+..|        |+..|++.++..++..+..+.
T Consensus       143 ~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~  176 (356)
T TIGR00901       143 ASPEFANTGLITLWGYIFFWTALLILPGLLVTLF  176 (356)
T ss_pred             hhhcccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence            88778        999998888766665544443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.53  E-value=7.1e-13  Score=121.53  Aligned_cols=157  Identities=11%  Similarity=-0.110  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHH-HHHHHH-
Q 023063           27 IFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASII-YQIGMI-  104 (288)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l-~~i~~~-  104 (288)
                      +....++...++-...+++|.|++ ++|++..+.+++.+.+.+...+++++.|.++||+ ||++.......+ ..+..+ 
T Consensus         9 l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~~~~   86 (382)
T TIGR00902         9 LALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIFAAA   86 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHH
Confidence            344455555555556678888885 6899999999999999999999999999999998 985433221111 111111 


Q ss_pred             HHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHH
Q 023063          105 CLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV  184 (288)
Q Consensus       105 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (288)
                      ....+.                      +.+.+++.+++.+.+.+...+...++..|. . +      +|++.++.....
T Consensus        87 ~~~~~~----------------------~~~~l~~~~~l~~~~~~~~~p~~~al~~~~-~-~------~~~~~~g~~~~~  136 (382)
T TIGR00902        87 FSAGAH----------------------NAWLLFIAIGLFALFFSAGMPIGDALANTW-Q-K------QFGLDYGKVRLI  136 (382)
T ss_pred             HHHhhh----------------------hHHHHHHHHHHHHHHHccchhHHHHHHHHH-H-H------HcCCCccHHHHH
Confidence            111222                      577788888888888888778877776543 2 2      588889999999


Q ss_pred             HHHHHHHHHHhHhheeeccchhhhhhHhHHH
Q 023063          185 MGAAILVAVTVLVYIQDNIGWGWGLGIPTFA  215 (288)
Q Consensus       185 ~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~  215 (288)
                      .++|..++|.+++++.+.+||+..|.+..+.
T Consensus       137 ~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~  167 (382)
T TIGR00902       137 GSAAFIIGSALFGGLIGMFDEQNILAILTAG  167 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence            9999999999999999999999988776554

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.53  E-value=6.7e-13  Score=137.46  Aligned_cols=155  Identities=12%  Similarity=0.053  Sum_probs=121.0

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCH--HHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPL--TKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIY   99 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~   99 (288)
                      +.+...++..++.++...+....+..++...++.+.  ...+++.+++.+...++.+++|+++||+ |||++++++.++.
T Consensus         9 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~~   87 (1146)
T PRK08633          9 IGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLFE   87 (1146)
T ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHHH
Confidence            344444455555555554455555566666666543  4468888899999999999999999998 9999999988777


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHH
Q 023063          100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (288)
Q Consensus       100 ~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (288)
                      .++.++..+...                   ..+.+.+++.+++.|++.+...+...++++|.+|++      +|+++++
T Consensus        88 ~~~~~~~~~~~~-------------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~  142 (1146)
T PRK08633         88 VGLTLLIVLAYY-------------------LGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKE------NLSRANG  142 (1146)
T ss_pred             HHHHHHHHHHHH-------------------HccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcc------cchhhhh
Confidence            666665554331                   115678888999999999999999999999999987      6999999


Q ss_pred             HHHHHHHHHHHHHHHhHhheeec
Q 023063          180 WYYFVMGAAILVAVTVLVYIQDN  202 (288)
Q Consensus       180 ~~~~~~~~g~~i~~~~~~~l~~~  202 (288)
                      +...+.++|.++++.+++++.+.
T Consensus       143 ~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        143 LLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999988765

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.53  E-value=1.5e-12  Score=120.07  Aligned_cols=167  Identities=13%  Similarity=0.095  Sum_probs=127.4

Q ss_pred             HHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhc----cchhH-HHHHHHHHHHHH
Q 023063           28 FSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAY----AGRFW-TITIASIIYQIG  102 (288)
Q Consensus        28 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~----~Grr~-~i~~~~~l~~i~  102 (288)
                      +.+.+.+...+.-...-+|.|+++ .|++..+.+++......  .+..++.|+++||+    +|||| .++++.++..++
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~   81 (402)
T PRK11902          5 LLLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS   81 (402)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence            455566666666667789999986 59999999998666654  58899999999997    26765 677777777766


Q ss_pred             HHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHH
Q 023063          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (288)
Q Consensus       103 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (288)
                      ...+.+..                   ...+.+.+++..++.++..+...+...+++.|.+|++      +|+++.++..
T Consensus        82 ~~~l~~~~-------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~------~r~~~~~~~~  136 (402)
T PRK11902         82 IAAMAFCP-------------------PHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPE------ERGAGAAVKV  136 (402)
T ss_pred             HHHHHhcC-------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh------hhhHHHHHHH
Confidence            66665432                   1124555555555667778888889999999999887      6999999999


Q ss_pred             HHHHHHHHHHHHhHhheeec-cchhhhhhHhHHHHHHHHHH
Q 023063          183 FVMGAAILVAVTVLVYIQDN-IGWGWGLGIPTFAMFLSIIA  222 (288)
Q Consensus       183 ~~~~~g~~i~~~~~~~l~~~-~g~~~~f~~~~~~~~~~~i~  222 (288)
                      .+.++|..+++.+.+++.+. .||+..|++.++..++..+.
T Consensus       137 ~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~  177 (402)
T PRK11902        137 LGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT  177 (402)
T ss_pred             HHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence            99999999999988888775 59999998877766554443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.53  E-value=7.3e-13  Score=125.22  Aligned_cols=149  Identities=19%  Similarity=0.177  Sum_probs=112.8

Q ss_pred             hhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 023063           40 GFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPP  119 (288)
Q Consensus        40 ~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~  119 (288)
                      ....++|.|+++++|++..+++.+.+...++..++.+++|+++||+ |||+.+..+..+..++.++.....         
T Consensus       293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~---------  362 (496)
T PRK03893        293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAIG---------  362 (496)
T ss_pred             hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhcc---------
Confidence            3557889999889999999999999999999999999999999998 999998887766555544332221         


Q ss_pred             CCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhhe
Q 023063          120 CEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYI  199 (288)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l  199 (288)
                                 +.+.+...+..++.+.......+..++++.|.+|++      +|++.+++++...++|+.++|.+.|++
T Consensus       363 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~g~~lgp~l~g~l  425 (496)
T PRK03893        363 -----------GANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTE------QRAAGLGFTYNVGALGGALAPILGALI  425 (496)
T ss_pred             -----------ccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHH------HhhcccchhhhhhhHHHHHHHHHHHHH
Confidence                       113333333333333333334566778889999887      699999999999999999999999999


Q ss_pred             eeccchhhhhhHhHHH
Q 023063          200 QDNIGWGWGLGIPTFA  215 (288)
Q Consensus       200 ~~~~g~~~~f~~~~~~  215 (288)
                      .+..||+..+.+.+..
T Consensus       426 ~~~~g~~~~~~~~~~~  441 (496)
T PRK03893        426 AQRLDLGTALASLSFS  441 (496)
T ss_pred             hccCChHHHHHHHHHH
Confidence            9999988776554443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.52  E-value=9.8e-13  Score=119.13  Aligned_cols=180  Identities=13%  Similarity=0.042  Sum_probs=127.7

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHH-HHHHHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWT-ITIASIIYQ  100 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~-i~~~~~l~~  100 (288)
                      +.++...+..++.....+.+..+++.|+++.+|.+..+.+++.....+...++.+++|+++||+ |||+. +........
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~  293 (399)
T TIGR00893       215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAI  293 (399)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHH
Confidence            4566666777777888888888999999999999999999999999999999999999999998 98862 111111111


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 023063          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (288)
Q Consensus       101 i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (288)
                      ++.+..........               .....+.......+.+.+.+ ..+...+++.|.+|++      .|++..++
T Consensus       294 ~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~g~~~~~  351 (399)
T TIGR00893       294 IAGLVLSLLMFATN---------------YVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGN------IAGLTGGL  351 (399)
T ss_pred             HHHHHHHHHHHHhc---------------cchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChh------HHHHHHHH
Confidence            22111111110000               00122223232333344444 6788899999999987      69999999


Q ss_pred             HHHHHHHHHHHHHHhHhheeeccc-hhhhhhHhHHHHHHHHHHHH
Q 023063          181 YYFVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLSIIAFL  224 (288)
Q Consensus       181 ~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~i~~~  224 (288)
                      .+...++|..++|.+.+++.+..| |+..|.+.+++.+++.+..+
T Consensus       352 ~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       352 INSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             HHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999888 98888877776666655443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.52  E-value=9.6e-13  Score=123.41  Aligned_cols=178  Identities=15%  Similarity=0.120  Sum_probs=121.8

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhcc-chhHHH-HHHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYA-GRFWTI-TIASIIY   99 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~-Grr~~i-~~~~~l~   99 (288)
                      +.+|...+..++.....++...++|.|+++++|++..+++.....+.++..++.+++|+++||+. |||+.. .....+.
T Consensus       253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~  332 (452)
T PRK11273        253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV  332 (452)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHH
Confidence            45666667777777778888899999999889999999998888888888899999999999971 233322 2222333


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHH
Q 023063          100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (288)
Q Consensus       100 ~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (288)
                      .++.+.+....                    ..+.+...+...+.+.+..........+..|.+|++      .+++..+
T Consensus       333 ~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~------~~g~~~g  386 (452)
T PRK11273        333 TIATIVYWLNP--------------------AGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKK------AAGTAAG  386 (452)
T ss_pred             HHHHHHHHHhc--------------------ccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChh------hhhhHHH
Confidence            33333222211                    012233333334444433222233345667899887      6999999


Q ss_pred             HHHHHHHHHHHH-HHHhHhheeeccchhhhhhHhHHHHHHHHHHHHH
Q 023063          180 WYYFVMGAAILV-AVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (288)
Q Consensus       180 ~~~~~~~~g~~i-~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~  225 (288)
                      +.+...++|+.+ +|.+.|++.+.+||+..|.+..+..+++++....
T Consensus       387 ~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~  433 (452)
T PRK11273        387 FTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  433 (452)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            998888888765 7999999999999999998877766666554443

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.51  E-value=3.2e-12  Score=121.22  Aligned_cols=178  Identities=13%  Similarity=0.103  Sum_probs=135.8

Q ss_pred             CcchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhc----cchhHH-HHH
Q 023063           20 GMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAY----AGRFWT-ITI   94 (288)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~----~Grr~~-i~~   94 (288)
                      .+|+.+.++.+.+......+.....++.|+.+ .|.+..+.+....+...  .++.++.|+++||+    +||||. ++.
T Consensus        10 ~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~gpl~Dr~~~~~~Grrr~~ll~   86 (491)
T PRK11010         10 QQPNSAILLILGFASGLPLALTSGTLQAWMTV-ENIDLKTIGFFSLVGQA--YVFKFLWSPLMDRYTPPFLGRRRGWLLA   86 (491)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCCchHHHHH
Confidence            45567777778888888888888888989865 59999998886322222  36889999999995    288886 556


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhh
Q 023063           95 ASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKT  174 (288)
Q Consensus        95 ~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~  174 (288)
                      +.+...++...++...                   ...+.+.+.+.+++.+++.+...+...++..|.+|++      +|
T Consensus        87 ~~i~~~~~~~~~a~~~-------------------~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~------~r  141 (491)
T PRK11010         87 TQLLLLVAIAAMGFLE-------------------PGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE------ER  141 (491)
T ss_pred             HHHHHHHHHHHHHHcC-------------------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh------hh
Confidence            6666666666655432                   1125667777788889988888899999999999977      69


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhHhheee-ccchhhhhhHhHHHHHHHHHHHHH
Q 023063          175 WKYFNWYYFVMGAAILVAVTVLVYIQD-NIGWGWGLGIPTFAMFLSIIAFLI  225 (288)
Q Consensus       175 ~~~~~~~~~~~~~g~~i~~~~~~~l~~-~~g~~~~f~~~~~~~~~~~i~~~~  225 (288)
                      ++..++...+..+|..+++.+.+++.+ ..||+..|++.+++.++..+..+.
T Consensus       142 g~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~  193 (491)
T PRK11010        142 GAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLL  193 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999988887 469999999887766555444333

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.51  E-value=8e-13  Score=130.00  Aligned_cols=133  Identities=11%  Similarity=0.012  Sum_probs=103.0

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHH
Q 023063           63 TLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLL  142 (288)
Q Consensus        63 ~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (288)
                      ...+..++..++.+++|+++||+ |||+++++++++..++.+++.+..                      +...+++.++
T Consensus       600 ~~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~~----------------------s~~~ll~~~~  656 (742)
T TIGR01299       600 VNFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFGN----------------------SESAMIALLC  656 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHc----------------------cHHHHHHHHH
Confidence            34555678889999999999998 999999999988888887776554                      3344555556


Q ss_pred             HHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHH
Q 023063          143 LAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIA  222 (288)
Q Consensus       143 l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~  222 (288)
                      +.+++.++..+...++++|.+|++      .|++++++.+....+|++++|.+++.+.+. +...+|++.+++.+++.++
T Consensus       657 l~g~~~~~~~~~~~a~~aEl~Pt~------~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll  729 (742)
T TIGR01299       657 LFGGLSIAAWNALDVLTVELYPSD------KRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLL  729 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHH
Confidence            667766777788899999999998      799999999999999999999999877553 3455666666655555444


Q ss_pred             HHH
Q 023063          223 FLI  225 (288)
Q Consensus       223 ~~~  225 (288)
                      ..+
T Consensus       730 ~~~  732 (742)
T TIGR01299       730 ALK  732 (742)
T ss_pred             HHh
Confidence            443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.51  E-value=1.5e-12  Score=135.09  Aligned_cols=137  Identities=13%  Similarity=0.020  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHH--HHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHH
Q 023063           58 TKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASI--IYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVA  135 (288)
Q Consensus        58 ~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~--l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  135 (288)
                      ...++..+++.+...++++++|+++||+ |||+++.....  +...+........                     .+++
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~~---------------------~s~~  109 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFHL---------------------NSVP  109 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHHH---------------------hhHH
Confidence            4467777888899999999999999998 99997643222  2222222222111                     1678


Q ss_pred             HHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHH
Q 023063          136 ILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFA  215 (288)
Q Consensus       136 ~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~  215 (288)
                      .+++.++++|++.+...+...+++.|.++++      +++++.++.+.+.++|.+++|.++|++....||+..|.+.+++
T Consensus       110 ~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~------~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~  183 (1140)
T PRK06814        110 LLFAALFLMGIHSALFGPIKYSILPDHLNKD------ELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGI  183 (1140)
T ss_pred             HHHHHHHHHHHHHHhhchHHHHhhHhhcCcc------ccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            8899999999999999999999999999987      6999999999999999999999999999888999888444444


Q ss_pred             HHHHHHH
Q 023063          216 MFLSIIA  222 (288)
Q Consensus       216 ~~~~~i~  222 (288)
                      .+++++.
T Consensus       184 ~~~~~~~  190 (1140)
T PRK06814        184 AVLGWLA  190 (1140)
T ss_pred             HHHHHHH
Confidence            4443333

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.50  E-value=5.2e-13  Score=124.09  Aligned_cols=174  Identities=14%  Similarity=0.145  Sum_probs=125.6

Q ss_pred             HHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhc---cchhH-HHHHHHHHHHHHHHHHH
Q 023063           32 VCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAY---AGRFW-TITIASIIYQIGMICLT  107 (288)
Q Consensus        32 ~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~---~Grr~-~i~~~~~l~~i~~~~~~  107 (288)
                      +..+..+..+.++++.|+++++|+++.+++++.++..+...+..|+.|+++||.   +|||| .++.+.....++.+++.
T Consensus         9 ~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~   88 (437)
T TIGR00792         9 FGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF   88 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH
Confidence            444555666678899999999999999999999999999999999999999983   38755 56677777777766665


Q ss_pred             HHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHH
Q 023063          108 ISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGA  187 (288)
Q Consensus       108 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (288)
                      ...   ...             .......+.+..++.+++.+.......++.+|..++.+     +|++..++.+.+.++
T Consensus        89 ~~~---~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-----~R~~~~~~~~~~~~~  147 (437)
T TIGR00792        89 TTP---DFS-------------ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPR-----ERESLSTFRRFGATL  147 (437)
T ss_pred             hCC---CCC-------------cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHH-----HHHHHHHHHHHHHHH
Confidence            432   110             11134455566677788888887788888888875433     789999988888888


Q ss_pred             HHHHHHHhHhhee-------eccchhhhhhHhHHHHHHHHHHHHHh
Q 023063          188 AILVAVTVLVYIQ-------DNIGWGWGLGIPTFAMFLSIIAFLIG  226 (288)
Q Consensus       188 g~~i~~~~~~~l~-------~~~g~~~~f~~~~~~~~~~~i~~~~~  226 (288)
                      |+.+++.+.+.+.       +..||+..+.+.+++.++..+.....
T Consensus       148 g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~  193 (437)
T TIGR00792       148 GGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFG  193 (437)
T ss_pred             HHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcC
Confidence            8877766554332       24578888877776665554444333

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.50  E-value=1.7e-12  Score=123.68  Aligned_cols=154  Identities=16%  Similarity=0.235  Sum_probs=125.3

Q ss_pred             hhhhhHHHHhHHhc-----CCCH--HHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhc
Q 023063           40 GFNTNMISYLTTQL-----HMPL--TKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAIL  112 (288)
Q Consensus        40 ~~~~~l~~yl~~~~-----~~~~--~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~  112 (288)
                      +..+....++++..     ..+.  .+.+++.+...++..++.++.|.++|++ |||++++++.+++.+|.+++..+.  
T Consensus        64 g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a~--  140 (513)
T KOG0254|consen   64 GGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALAP--  140 (513)
T ss_pred             ccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHhh--
Confidence            45555555555422     1222  3458999999999999999999999998 999999999999999999999988  


Q ss_pred             CCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHH
Q 023063          113 PQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVA  192 (288)
Q Consensus       113 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~  192 (288)
                                          +...+.++|++.|+|.|+.....+.|++|..|++      .||...+..++...+|..++
T Consensus       141 --------------------~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~------~RG~l~~~~~l~~~~Gi~~~  194 (513)
T KOG0254|consen  141 --------------------SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAH------IRGTLVSLYQLFITIGILLG  194 (513)
T ss_pred             --------------------hHHHHHHHHHHhccchhhhhhcchhhHhhcCChh------hhHHHHHHHHHHHHHHHHHH
Confidence                                7899999999999999999999999999999998      69999999999999999999


Q ss_pred             HHhHhheeec-cchhhhhhHhHHHHHHHHHH
Q 023063          193 VTVLVYIQDN-IGWGWGLGIPTFAMFLSIIA  222 (288)
Q Consensus       193 ~~~~~~l~~~-~g~~~~f~~~~~~~~~~~i~  222 (288)
                      ..++....+. .+||..+.+..+..++..+.
T Consensus       195 ~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~  225 (513)
T KOG0254|consen  195 YCINYGTSKVYAGWRIPLGLALIPAVILALG  225 (513)
T ss_pred             HHHhhhhccCCccHHHHHHHHHHHHHHHHHH
Confidence            6555444332 48997776665555444444

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.50  E-value=2.2e-12  Score=118.87  Aligned_cols=165  Identities=10%  Similarity=-0.045  Sum_probs=124.0

Q ss_pred             HHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH
Q 023063           29 SNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTI  108 (288)
Q Consensus        29 ~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~  108 (288)
                      ...++....++....++|.|+.+ .|++..+.+.+.....++..++.++.|+++||+ |||+.+..+.+...++.+....
T Consensus       227 ~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~  304 (406)
T PRK11551        227 ISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLAALAA  304 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHh
Confidence            34444455666777788988875 799999999999999999999999999999998 9999988766655555444433


Q ss_pred             HhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHH
Q 023063          109 SAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAA  188 (288)
Q Consensus       109 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  188 (288)
                      ..                      +.+.+.+..++.+++.+...+...++..|.+|++      +|++..++.+....+|
T Consensus       305 ~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~g  356 (406)
T PRK11551        305 AP----------------------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQ------VRGTGVGAAVAVGRLG  356 (406)
T ss_pred             cC----------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchh------hhhhhhhHHHHhhhHH
Confidence            22                      3344455556677777777788888999999987      6999999999999999


Q ss_pred             HHHHHHhHhheeeccc-hhhhhhHhHHHHHHHHHHH
Q 023063          189 ILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLSIIAF  223 (288)
Q Consensus       189 ~~i~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~i~~  223 (288)
                      ..++|.+.|++.++.+ |...+++...+.+++.+..
T Consensus       357 ~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  392 (406)
T PRK11551        357 SMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAA  392 (406)
T ss_pred             HHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHH
Confidence            9999999999887654 4445555544444444333

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=99.50  E-value=6.2e-14  Score=128.31  Aligned_cols=153  Identities=44%  Similarity=0.828  Sum_probs=115.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCCh
Q 023063           89 FWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDP  168 (288)
Q Consensus        89 r~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~  168 (288)
                      +|+++++.+++.+|.+++.++. .|...            +++...+.+++++.+.++|.|+..+++.++++||+++++ 
T Consensus         1 yktI~~g~~~~~~G~~ll~l~~-~~~~~------------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~-   66 (372)
T PF00854_consen    1 YKTILLGSIVYLLGHVLLTLSA-IPPSL------------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDD-   66 (372)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHH-TSSSC------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTT-
T ss_pred             CHhhhHHHHHHHHHHHHhHHHH-hcchh------------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccc-
Confidence            4899999999999999988887 33322            123356789999999999999999999999999999874 


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHHhccceeec-CCCCChhhH-HHHH
Q 023063          169 KQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNL-DPAGSPFTR-LLQV  246 (288)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~-~~~~  246 (288)
                        +++|.++++++|++.|+|+.+++.+.+++++++||...|.++.+..+++++.++..+++++.+ ++.+++..+ ...+
T Consensus        67 --~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~  144 (372)
T PF00854_consen   67 --DSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLV  144 (372)
T ss_dssp             --TTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHH
T ss_pred             --hhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHH
Confidence              237999999999999999999999999999999999999999999999999999998888776 666666665 4444


Q ss_pred             HHHHHHhCccc
Q 023063          247 CVAAFRKRKLT  257 (288)
Q Consensus       247 ~~~~~~~~~~~  257 (288)
                      +....+++...
T Consensus       145 ~~~~~~~~~~~  155 (372)
T PF00854_consen  145 LVAAFKKRKLA  155 (372)
T ss_dssp             HHHHHHHHCCC
T ss_pred             HHHHHHHhhcc
Confidence            44555554443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.50  E-value=4.3e-12  Score=116.54  Aligned_cols=174  Identities=10%  Similarity=0.011  Sum_probs=129.7

Q ss_pred             HHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHH
Q 023063           24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGM  103 (288)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~  103 (288)
                      ++......++.....++...+++.|+.+..|++..+++++.....++..++.++.|+++||+ |||+.+ .+..+..++.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~-~~~~~~~~~~  284 (390)
T PRK03545        207 LVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFLL-IAIALLLVCL  284 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHH-HHHHHHHHHH
Confidence            33344445555556666667788898888899999999999999999999999999999998 987654 4444444443


Q ss_pred             HHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHH
Q 023063          104 ICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF  183 (288)
Q Consensus       104 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (288)
                      .......                     .+.+.+.+..++.|++.+...+...+.+.|..|+       .++++++.++.
T Consensus       285 ~~l~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~g~~~~  336 (390)
T PRK03545        285 LLLLPAA---------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD-------ATDVAMALFSG  336 (390)
T ss_pred             HHHHHHh---------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCC-------cHHHHHHHHHH
Confidence            3322211                     1445566666777888777666677777777664       48889999988


Q ss_pred             HHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHHhc
Q 023063          184 VMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGY  227 (288)
Q Consensus       184 ~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~~  227 (288)
                      ..++|..+||.++|++.+++|++..|.+.+++.+++++......
T Consensus       337 ~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        337 IFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             HHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence            89999999999999999999999999888888877776655544

>TIGR00889 2A0110 nucleoside transporter

Probab=99.49  E-value=1.2e-12  Score=121.63  Aligned_cols=177  Identities=9%  Similarity=0.015  Sum_probs=131.9

Q ss_pred             HHHHHHHHHHHhHHhhhhhHHHHhHHhcCCC--------HHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHH
Q 023063           26 FIFSNEVCEKLAVVGFNTNMISYLTTQLHMP--------LTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASI   97 (288)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~--------~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~   97 (288)
                      ..++..++..........+++.|+.+ .|.+        ..+.+...++..+...++.++.|+++||+ |||+++.++.+
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~~~  289 (418)
T TIGR00889       212 IFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLSLV  289 (418)
T ss_pred             eHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence            34444444444444445667788764 4433        46678888888888999999999999998 99999999998


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhH
Q 023063           98 IYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  177 (288)
Q Consensus        98 l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (288)
                      +..++..+......                  +....+.+++..++.+++.+...+....+++|.+|++      .|++.
T Consensus       290 ~~~v~~~l~~~~~~------------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~------~~g~~  345 (418)
T TIGR00889       290 AWALRFGFFAYGDP------------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVH------IRASA  345 (418)
T ss_pred             HHHHHHHHHHHcCc------------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHH
Confidence            88877666554220                  0112345666778888888888888889999999987      69999


Q ss_pred             HHHHH-HHHHHHHHHHHHhHhheeec------cchhhhhhHhHHHHHHHHHHHHHhcc
Q 023063          178 FNWYY-FVMGAAILVAVTVLVYIQDN------IGWGWGLGIPTFAMFLSIIAFLIGYP  228 (288)
Q Consensus       178 ~~~~~-~~~~~g~~i~~~~~~~l~~~------~g~~~~f~~~~~~~~~~~i~~~~~~~  228 (288)
                      +++.+ ....+|..++|.++|++.++      +||+..|.+.+++.+++.+.+....+
T Consensus       346 ~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~  403 (418)
T TIGR00889       346 QGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK  403 (418)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99997 56789999999999998876      46898998887777666665555443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PTZ00207 hypothetical protein; Provisional

Probab=99.49  E-value=4.7e-12  Score=121.32  Aligned_cols=160  Identities=13%  Similarity=0.039  Sum_probs=120.1

Q ss_pred             HHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 023063           38 VVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRP  117 (288)
Q Consensus        38 ~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~  117 (288)
                      .|++.. ....+++++|++..+.+++.+.... ..++.+++|+++||+ |+|++++++.++..+++++++++.. . .  
T Consensus        43 ~y~fsv-~s~~L~~~lgls~~~l~~i~svg~~-~g~~~lp~G~L~Dr~-G~R~vllig~ll~~iG~ll~ala~~-~-~--  115 (591)
T PTZ00207         43 MYAFNL-ISGAMQARYNLTQRDLSTITTVGIA-VGYFLLPYSFIYDYL-GPRPIFVLSMTVFCLGTLLFALTFQ-E-V--  115 (591)
T ss_pred             HHHHHH-HHHHHHHHhCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHhc-c-c--
Confidence            344433 4456788999999999988876443 345677789999998 9999999999999999999988630 0 0  


Q ss_pred             CCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHH-HHHhH
Q 023063          118 PPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILV-AVTVL  196 (288)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i-~~~~~  196 (288)
                                  -..+.+.+++.+++.|+|.+...+.....+.++||+       +||.+.++...+.++|+.+ +++..
T Consensus       116 ------------i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~-------~RG~a~Gi~~~~~gLGsaI~~~l~~  176 (591)
T PTZ00207        116 ------------IEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPS-------NRGAVVAIMKTFTGLGSAILGSIQL  176 (591)
T ss_pred             ------------ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-------hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        012678888999999999998888888889999985       5999999999999999986 55545


Q ss_pred             hheeeccchhhhhhHhHHHHHHHHHHHHH
Q 023063          197 VYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (288)
Q Consensus       197 ~~l~~~~g~~~~f~~~~~~~~~~~i~~~~  225 (288)
                      +++.  .+|+..|++.+++.++..+..+.
T Consensus       177 ~l~~--~~~~~~fl~l~vl~~vv~ll~~~  203 (591)
T PTZ00207        177 AFFS--DNTSAYFFFLMSFALVVGILAIV  203 (591)
T ss_pred             HHHH--HhHHHHHHHHHHHHHHHHHHHHh
Confidence            5544  35666666666655554444333

>PRK12382 putative transporter; Provisional

Probab=99.48  E-value=1.4e-12  Score=119.66  Aligned_cols=161  Identities=16%  Similarity=0.178  Sum_probs=125.9

Q ss_pred             HHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhc
Q 023063           33 CEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAIL  112 (288)
Q Consensus        33 ~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~  112 (288)
                      +....+..+..+.+.|+++ .|++.  .+.....+.++..++.++.|++.||+ |+|+.+..+..+..++.++.....  
T Consensus       227 l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~--  300 (392)
T PRK12382        227 LQGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLAP--  300 (392)
T ss_pred             HHHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHcc--
Confidence            3445555666777888864 46654  44555566677788899999999998 999999988888887776655433  


Q ss_pred             CCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHH
Q 023063          113 PQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVA  192 (288)
Q Consensus       113 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~  192 (288)
                                          +.+.+.+..++.+++.+...+...+.+.|.+|++      +|++..++++....+|..++
T Consensus       301 --------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~g~~ig  354 (392)
T PRK12382        301 --------------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQ------VRGTALGGYAAFQDIAYGVS  354 (392)
T ss_pred             --------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHH
Confidence                                3455566777888888887787788888888876      69999999999999999999


Q ss_pred             HHhHhheeeccchhhhhhHhHHHHHHHHHHHHH
Q 023063          193 VTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (288)
Q Consensus       193 ~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~  225 (288)
                      |.+.+++.+++||+..|.+.+++.+++.+..+.
T Consensus       355 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        355 GPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999998888777776665543

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.48  E-value=3e-12  Score=117.71  Aligned_cols=163  Identities=11%  Similarity=0.018  Sum_probs=123.3

Q ss_pred             HHHhHHhhhhhHHHHhHHhcCCCHH---HHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHh
Q 023063           34 EKLAVVGFNTNMISYLTTQLHMPLT---KAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISA  110 (288)
Q Consensus        34 ~~~~~~~~~~~l~~yl~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~  110 (288)
                      .......+.+.++.|+.+..+....   ..+.+..+..++..++.++.|+++||+ |||+.+..+..+..++.+......
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~  309 (408)
T PRK09874        231 IQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPMSFVQ  309 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHHhc
Confidence            3344444556677888765443221   234455566677778889999999998 999999988877766665554433


Q ss_pred             hcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHH
Q 023063          111 ILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAIL  190 (288)
Q Consensus       111 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  190 (288)
                                            +.+.+.+..++.|++.+...+...+++.+..+++      ++++.++.++...++|..
T Consensus       310 ----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~g~~  361 (408)
T PRK09874        310 ----------------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQ------IAGRIFSYNQSFRDIGNV  361 (408)
T ss_pred             ----------------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcc------cceeeehHHHHHHHHHHH
Confidence                                  4555667777889999988888888888887776      689999999999999999


Q ss_pred             HHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHH
Q 023063          191 VAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (288)
Q Consensus       191 i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~  225 (288)
                      ++|.++|.+.+..||+..|.+.+++.+++.+....
T Consensus       362 ~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        362 TGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             hhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999888877776655544

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.47  E-value=2.8e-12  Score=117.54  Aligned_cols=156  Identities=12%  Similarity=-0.030  Sum_probs=115.0

Q ss_pred             HHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchh----HHHHHHHHHHHHHHHHH
Q 023063           31 EVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRF----WTITIASIIYQIGMICL  106 (288)
Q Consensus        31 ~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr----~~i~~~~~l~~i~~~~~  106 (288)
                      .++...++..+.+++|.|++ ++|.+..+++++.+.+.+...++.+++|.++||+ ||+    +.+.+...+.   .+..
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~---~~~~   87 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLF---AVAF   87 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHH---HHHH
Confidence            34444555566778889995 5799999999999999999999999999999998 984    2222222111   1111


Q ss_pred             HHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHH
Q 023063          107 TISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMG  186 (288)
Q Consensus       107 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (288)
                      ...                     ..+.+.+++.+.+.+++.+...+...++..+. .+       +|++.++......+
T Consensus        88 ~~~---------------------~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~-~~-------~~~~a~~~~~~~~~  138 (382)
T PRK11128         88 WFG---------------------AHSFWLLFVAIGLFNLFFSPLVPLTDALANTW-QK-------QIGLDYGKVRLWGS  138 (382)
T ss_pred             HHh---------------------cccHHHHHHHHHHHHHHHcccccHHHHHHHHH-Hh-------hccCCcchHHHHHH
Confidence            111                     11577777888888998888888877777765 22       46777777778889


Q ss_pred             HHHHHHHHhHhheeeccchhhhhhHhHHHHHHHH
Q 023063          187 AAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSI  220 (288)
Q Consensus       187 ~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~  220 (288)
                      +|..++|.+++++.+++||+..|++.++..++..
T Consensus       139 lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~  172 (382)
T PRK11128        139 IAFVIGSALTGKLVSWFGEQAILWILTAGVASML  172 (382)
T ss_pred             HHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence            9999999999999999999999887765544443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.47  E-value=4.7e-12  Score=115.98  Aligned_cols=155  Identities=12%  Similarity=0.157  Sum_probs=117.8

Q ss_pred             HhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 023063           36 LAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQL  115 (288)
Q Consensus        36 ~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~  115 (288)
                      ..+.....++|.|+++ .|.++.+.+...+...++..++.++.|+++||+ |+|+.+..+..+..++.+...  .     
T Consensus       214 ~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~--~-----  284 (381)
T PRK03633        214 IVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML--S-----  284 (381)
T ss_pred             HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh--h-----
Confidence            3344445678888875 699999999988888899999999999999998 999999888877777655432  1     


Q ss_pred             CCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHh
Q 023063          116 RPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTV  195 (288)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~  195 (288)
                                       .. .......+.+++.+...+...+.+.|..|++      +++...+.++...++|..++|.+
T Consensus       285 -----------------~~-~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~------~~~~~~~~~~~~~~lG~~igp~~  340 (381)
T PRK03633        285 -----------------QA-AMAPALFILGAAGFTLYPVAMAWACEKVEHH------ELVAMNQALLLSYTVGSLLGPSF  340 (381)
T ss_pred             -----------------hH-HHHHHHHHHHHHHHhHHHHHHHHHHccCCHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence                             11 1223445556666666788888888888775      46677777788899999999999


Q ss_pred             HhheeeccchhhhhhHhHHHHHHHHHHH
Q 023063          196 LVYIQDNIGWGWGLGIPTFAMFLSIIAF  223 (288)
Q Consensus       196 ~~~l~~~~g~~~~f~~~~~~~~~~~i~~  223 (288)
                      .|++.+++|++..|.+.+.+.++..+..
T Consensus       341 ~G~l~~~~g~~~~f~~~~~~~l~~~~~~  368 (381)
T PRK03633        341 TAMLMQNYSDNLLFIMIASVSFIYLLML  368 (381)
T ss_pred             HHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence            9999999999988888777665554433

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.47  E-value=7.7e-13  Score=122.71  Aligned_cols=163  Identities=12%  Similarity=0.048  Sum_probs=124.6

Q ss_pred             HHHhHHhhhhhHHHHhHHhc---CCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHh
Q 023063           34 EKLAVVGFNTNMISYLTTQL---HMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISA  110 (288)
Q Consensus        34 ~~~~~~~~~~~l~~yl~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~  110 (288)
                      ....+......++.|+.+.+   +.+..+.+.+.++..+...++.+++|+++||+ |||+.+..+.++..++.++..+..
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~~~~  313 (420)
T PRK09528        235 VACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSGFAT  313 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHHhcc
Confidence            33344444456777776543   56667788888888888889999999999998 999999988888888777766544


Q ss_pred             hcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH-HHHHHHHHH
Q 023063          111 ILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW-YYFVMGAAI  189 (288)
Q Consensus       111 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~  189 (288)
                                            +++.+++..++.+++.+...+....++.|.+|++      .++...+. ++....+|.
T Consensus       314 ----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~a~~~~~~~~~~~~lg~  365 (420)
T PRK09528        314 ----------------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVR------LSATIYLVGFQFAKQLGA  365 (420)
T ss_pred             ----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc------ceeeeeeehHHHHHHHHH
Confidence                                  4566667777888887777777778889999876      46666554 667788999


Q ss_pred             HHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHH
Q 023063          190 LVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (288)
Q Consensus       190 ~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~  225 (288)
                      .+++.+.|++.+..||+..|.+.+++.++..++...
T Consensus       366 ~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~  401 (420)
T PRK09528        366 VFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVF  401 (420)
T ss_pred             HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998877766555544433

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.47  E-value=2.1e-12  Score=122.00  Aligned_cols=176  Identities=7%  Similarity=0.025  Sum_probs=113.5

Q ss_pred             hHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhH-----HHHHHHH
Q 023063           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFW-----TITIASI   97 (288)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~-----~i~~~~~   97 (288)
                      ..|.+.+..++.....+.+..++|.|+.+++|++..+++.......++..++.+++|+++||+ |||+     .......
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~  331 (476)
T PLN00028        253 RTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIV  331 (476)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHH
Confidence            344444444444455566677889999888999999999999999999999999999999998 8762     2221111


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhH
Q 023063           98 IYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  177 (288)
Q Consensus        98 l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (288)
                      ....+.....+..                    ..+.+...+..++.+++.+...+...++..+..|+       .++..
T Consensus       332 ~~l~~i~~~~~~~--------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~g~~  384 (476)
T PLN00028        332 QTLGGVFCIWLGR--------------------ANSLGAAIVVMILFSIFVQAACGATFGIVPFVSRR-------SLGVI  384 (476)
T ss_pred             HHHHHHHHHHhcc--------------------cchHHHHHHHHHHHHHHHHHhhhhhcccCcccChh-------hchhh
Confidence            1111111111111                    01233334444455555544445555556665443       58889


Q ss_pred             HHHHHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHHhc
Q 023063          178 FNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGY  227 (288)
Q Consensus       178 ~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~~  227 (288)
                      .++.+.+.++|+.+++.+.+ ..+..+|+..|++.+++.+++.+..++.+
T Consensus       385 ~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        385 SGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             hhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence            99888888888888887654 22344688999888887777776666654

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.47  E-value=1.4e-12  Score=119.20  Aligned_cols=155  Identities=15%  Similarity=0.114  Sum_probs=119.4

Q ss_pred             HHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH
Q 023063           29 SNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTI  108 (288)
Q Consensus        29 ~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~  108 (288)
                      ....+.+...+....+++.|+.+++|++..+.+++.....++..++.++.|+++||+ |||+.+.++..+..+..+....
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~  323 (405)
T TIGR00891       245 VLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAGQLLIIPVFA  323 (405)
T ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHHHHHHHHHHH
Confidence            334444555566677889999989999999999999999999999999999999998 9999988877654333222221


Q ss_pred             HhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHH
Q 023063          109 SAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAA  188 (288)
Q Consensus       109 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  188 (288)
                      ..                     .+.+.+.+...+.++..+...+..++++.|.+|++      +|++.++..+...++|
T Consensus       324 ~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~g~~~~~~~~g  376 (405)
T TIGR00891       324 IG---------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTD------QRAAGLGFTYQLGNLG  376 (405)
T ss_pred             hC---------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcc------hhHHHhhHHHHHHHHH
Confidence            11                     13344555555666666667778888999999987      6999999999999999


Q ss_pred             HHHHHHhHhheeeccc-hhhhhhH
Q 023063          189 ILVAVTVLVYIQDNIG-WGWGLGI  211 (288)
Q Consensus       189 ~~i~~~~~~~l~~~~g-~~~~f~~  211 (288)
                      ..++|.+.|++.+..| |+..+..
T Consensus       377 ~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       377 GALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHHHHHHHHHHHhccccchhHHh
Confidence            9999999999999888 7655543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.47  E-value=2.3e-12  Score=119.35  Aligned_cols=160  Identities=7%  Similarity=-0.060  Sum_probs=127.0

Q ss_pred             HHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 023063           38 VVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRP  117 (288)
Q Consensus        38 ~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~  117 (288)
                      ..++..++|.|+++.+|.++.+.+++.+...++..++.++.|+++||. ++++.+..+.++..++.+++....       
T Consensus       239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~-------  310 (417)
T PRK10489        239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLMP-------  310 (417)
T ss_pred             HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHccc-------
Confidence            345667789999888999999999999999999999999999999997 888888888777777666554433       


Q ss_pred             CCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHh
Q 023063          118 PPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLV  197 (288)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~  197 (288)
                                     +.+...+..++.|++.+...+...+++.|..|++      .|++..++++...++|..++|.+.|
T Consensus       311 ---------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~g~~~g~~l~G  369 (417)
T PRK10489        311 ---------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDE------MLGRINGLWTAQNVTGDAIGAALLG  369 (417)
T ss_pred             ---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH------HHHHHHHHHHHHHhhhHhHHHHHHH
Confidence                           4455556667778877776677778889999876      6999999999999999999999999


Q ss_pred             heeeccchhhhhhHhHHHHHHHHHHHHHh
Q 023063          198 YIQDNIGWGWGLGIPTFAMFLSIIAFLIG  226 (288)
Q Consensus       198 ~l~~~~g~~~~f~~~~~~~~~~~i~~~~~  226 (288)
                      ++.+.+|++..+...++..++..++....
T Consensus       370 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  398 (417)
T PRK10489        370 GLGAMMTPVASASASGFGLLIIGVLLLLV  398 (417)
T ss_pred             HHHHHhchhhHHHHHHHHHHHHHHHHHHh
Confidence            99998898877776666555544444443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.47  E-value=1.1e-12  Score=118.39  Aligned_cols=186  Identities=13%  Similarity=0.055  Sum_probs=148.5

Q ss_pred             cchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHH
Q 023063           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ  100 (288)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~  100 (288)
                      .+.+|.+.+..+..--++.++..+++.|++++++.++.+++.+...+...+.+..+++|+|+||+ |.+|+++.....+.
T Consensus       217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~  295 (417)
T COG2223         217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMA  295 (417)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHH
Confidence            46778888888888888888999999999999999999999999999999999999999999998 88888888887777


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 023063          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (288)
Q Consensus       101 i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (288)
                      ++.....+..  +...             ...+....+...+..++..|.-+..+..++...+++       +.|...++
T Consensus       296 ~~~~~l~~~~--~~~~-------------~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-------~~G~v~G~  353 (417)
T COG2223         296 LAAALLSLFL--TGFG-------------HGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-------ETGAVTGI  353 (417)
T ss_pred             HHHHHHHccc--cccc-------------cCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-------hhhHHHHH
Confidence            7776666533  1100             012445555556666777777777788888888887       48888999


Q ss_pred             HHHHHHHHHHHHHHhHhheeeccc-hhhhhhHhHHHHHHHHHHHHHhccc
Q 023063          181 YYFVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLSIIAFLIGYPL  229 (288)
Q Consensus       181 ~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~i~~~~~~~~  229 (288)
                      .....++|++.-|...+...+.+| ++..|++...+.+++.+..+....+
T Consensus       354 vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r  403 (417)
T COG2223         354 VGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYAR  403 (417)
T ss_pred             HHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999998888888 7888888888887777766665443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.46  E-value=4.3e-12  Score=118.41  Aligned_cols=178  Identities=11%  Similarity=-0.027  Sum_probs=119.7

Q ss_pred             hHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccch--hHHHHHHHHHHH
Q 023063           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGR--FWTITIASIIYQ  100 (288)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr--r~~i~~~~~l~~  100 (288)
                      .++.+.+..++....++++..++|.|+.+++|++..+++...+.+.++..++.+++|+++||+.++  ++......+...
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~  323 (434)
T PRK11663        244 YIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGIL  323 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHH
Confidence            455555556666666777788999999888999999999999999999999999999999997322  232222111111


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 023063          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (288)
Q Consensus       101 i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (288)
                      +....+....   .                . +.....+..+..|++............+|.+|++      +|++..++
T Consensus       324 ~~~~~~~~~~---~----------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~  377 (434)
T PRK11663        324 LSVGSLWLMP---F----------------A-SYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKE------AAGAATGF  377 (434)
T ss_pred             HHHHHHHHcc---c----------------c-cHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHh------hHHhHHHH
Confidence            1111111111   0                0 1222222223333332222223345678888776      69999999


Q ss_pred             HHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHHh
Q 023063          181 YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIG  226 (288)
Q Consensus       181 ~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~  226 (288)
                      .+...++|+.++|.+.+++.+.+||+..|.+.+++.+++.+..+..
T Consensus       378 ~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  423 (434)
T PRK11663        378 VGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPF  423 (434)
T ss_pred             HHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988877776665544443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.46  E-value=3.1e-12  Score=119.30  Aligned_cols=152  Identities=11%  Similarity=0.018  Sum_probs=106.6

Q ss_pred             HHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHH-HH
Q 023063           29 SNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMIC-LT  107 (288)
Q Consensus        29 ~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~-~~  107 (288)
                      ...++....++.+..+.|.|+++.+|++..++++......++..++.+++|+++||+ |||+.+..+..+..+..++ ..
T Consensus       245 ~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~  323 (434)
T PRK15075        245 LMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAILTAYPALS  323 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHH
Confidence            334445667778888999999988999999998888888888899999999999998 9999887765443322221 11


Q ss_pred             HHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHH-HHH
Q 023063          108 ISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF-VMG  186 (288)
Q Consensus       108 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  186 (288)
                      ...                   .........+..++.+++.+...+...++..|.+|++      .|+..+++.+. +..
T Consensus       324 ~~~-------------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~------~rg~~~g~~~~~~~~  378 (434)
T PRK15075        324 WLV-------------------AAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAE------VRTAGFSLAYSLATA  378 (434)
T ss_pred             HHH-------------------cCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCC------ccchheeHHHHHHHH
Confidence            111                   0012222223334445556666666678889999988      68888887544 444


Q ss_pred             HHHHHHHHhHhheeeccchh
Q 023063          187 AAILVAVTVLVYIQDNIGWG  206 (288)
Q Consensus       187 ~g~~i~~~~~~~l~~~~g~~  206 (288)
                      +++.++|.+.+++.+..|+.
T Consensus       379 ~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        379 IFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             HHhhhHHHHHHHHHHhcCCc
Confidence            56788999999998887753

>TIGR00897 2A0118 polyol permease family

Probab=99.46  E-value=7.4e-12  Score=115.59  Aligned_cols=177  Identities=13%  Similarity=0.050  Sum_probs=127.8

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHH-HHHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTIT-IASIIYQ  100 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~-~~~~l~~  100 (288)
                      +.++...+..++....+++...+.|.|++ ++|++..+.+.+.....++..++.++.|+++||+ |||+.+. .+.+...
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~  299 (402)
T TIGR00897       222 PNVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCG  299 (402)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHH
Confidence            44566666677778888888899999986 4899999999888888899999999999999998 9888764 2333333


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 023063          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (288)
Q Consensus       101 i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (288)
                      ++.+.+....   ..              ...+.+...+..++.|++.+...+ ..+.+.|..|+       +|++.+++
T Consensus       300 ~~~~~l~~~~---~~--------------~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~~-------~~g~~~g~  354 (402)
T TIGR00897       300 IFTLALYYIP---QH--------------FGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLAPK-------HKGAAMSV  354 (402)
T ss_pred             HHHHHHHHHH---Hc--------------cCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCcc-------hhHHHHHH
Confidence            3332222211   00              011344455556667777666544 34556665443       59999999


Q ss_pred             HHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHH
Q 023063          181 YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (288)
Q Consensus       181 ~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~  225 (288)
                      .+...++|+.++|.+.+.+.+..|+...|++.+++.+++.+...+
T Consensus       355 ~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       355 LNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF  399 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999899998888887777666555444

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.45  E-value=1.5e-12  Score=124.31  Aligned_cols=140  Identities=14%  Similarity=0.066  Sum_probs=124.2

Q ss_pred             HhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccc
Q 023063           51 TQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEAN  130 (288)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  130 (288)
                      +..+.+.....+..+++.++..++++++|.++||+ |||++++.+.++..++.++.+++.                    
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-GRk~~~~~~~~~~~i~~~~~a~a~--------------------  169 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-GRKPVLLVSLLLFIIFGILTAFAP--------------------  169 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-ccHHHHHHHHHHHHHHHHHHHHhC--------------------
Confidence            45667888888999999999999999999999996 999999999999999999888877                    


Q ss_pred             cchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhheeeccchhhhhh
Q 023063          131 KGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLG  210 (288)
Q Consensus       131 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~  210 (288)
                        +++.+.+.|++.|++.++...+...+++|.++++      .|+.+... ......++.+++.+++++.+  +||+.++
T Consensus       170 --~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~------~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~  238 (521)
T KOG0255|consen  170 --NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPK------QRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFW  238 (521)
T ss_pred             --cHHHHHHHHHHHHhhccchhHHhHhhheeecCcc------hhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHH
Confidence              8899999999999999999999999999999998      69888888 77778888889988888877  8999888


Q ss_pred             HhHHHHHHHHHH
Q 023063          211 IPTFAMFLSIIA  222 (288)
Q Consensus       211 ~~~~~~~~~~i~  222 (288)
                      +..+..++.++.
T Consensus       239 ~~~~~~~~~~~~  250 (521)
T KOG0255|consen  239 IISIPSGLFLLL  250 (521)
T ss_pred             HHHHHHHHHHHH
Confidence            877766655544

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.45  E-value=4.8e-12  Score=117.95  Aligned_cols=169  Identities=15%  Similarity=0.020  Sum_probs=108.3

Q ss_pred             HHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHh
Q 023063           31 EVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISA  110 (288)
Q Consensus        31 ~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~  110 (288)
                      .++....+|++..++|.|+.+.+|++..+.+...++..+...++.++.|+++||+ |||+.+.++.++..+..+......
T Consensus       252 ~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~  330 (432)
T PRK10406        252 TAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALFTVPILSAL  330 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHH
Confidence            3344677888899999999988999999988888888888888899999999998 999988776654433332222111


Q ss_pred             hcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHH-HHH
Q 023063          111 ILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMG-AAI  189 (288)
Q Consensus       111 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~  189 (288)
                        +                ...+.........+..++.+...+...++.+|.+|++      .|+.+.++.+...+ +++
T Consensus       331 --~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~------~r~t~~g~~~~~g~~~~g  386 (432)
T PRK10406        331 --Q----------------NVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQ------VRALGVGLSYAVANALFG  386 (432)
T ss_pred             --H----------------cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------ccchhhhHHHHHHHHHHH
Confidence              0                0001221111112222233333445678889999998      69999998776544 334


Q ss_pred             HHHHHhHhheeeccc-hhhhhhHhHHHHHHHHHHHHH
Q 023063          190 LVAVTVLVYIQDNIG-WGWGLGIPTFAMFLSIIAFLI  225 (288)
Q Consensus       190 ~i~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~i~~~~  225 (288)
                      ...|.+.+.+. ..| |...+++.++..+++++..++
T Consensus       387 ~~~p~~~~~l~-~~g~~~~~~~~~~~~~~i~~~~~~~  422 (432)
T PRK10406        387 GSAEYVALSLK-SIGMETAFFWYVTLMAVVAFLVSLM  422 (432)
T ss_pred             hHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHHHH
Confidence            45777777654 345 555555555555555444443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.45  E-value=7e-12  Score=117.78  Aligned_cols=174  Identities=10%  Similarity=0.024  Sum_probs=132.6

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhc-cchhHHHHHHHHHH-
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAY-AGRFWTITIASIIY-   99 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~-~Grr~~i~~~~~l~-   99 (288)
                      +.++..+...++..++++....+++.|+++ +|++..+++++.+...++..++.+++|+++||. +++|+..+++..+. 
T Consensus       241 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  319 (455)
T TIGR00892       241 RGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLF  319 (455)
T ss_pred             chHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHH
Confidence            345555566667777778888889999865 799999999999999999999999999999984 24444444333222 


Q ss_pred             -HHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHH
Q 023063          100 -QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  178 (288)
Q Consensus       100 -~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (288)
                       .++.++.....                      +.+.+++..++.|++.+...+...+++.|.+|++      ++++.+
T Consensus       320 ~~l~~ll~~~~~----------------------~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~------~~g~~~  371 (455)
T TIGR00892       320 NGLTHLLCALAG----------------------DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQ------RFSSAV  371 (455)
T ss_pred             HHHHHHHHHHhc----------------------hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHH------HHhhHH
Confidence             23233332222                      4566677788889999998899999999999876      699999


Q ss_pred             HHHHHHHHHHHHHHHHhHhheeecc-chhhhhhHhHHHHHHHHHHHH
Q 023063          179 NWYYFVMGAAILVAVTVLVYIQDNI-GWGWGLGIPTFAMFLSIIAFL  224 (288)
Q Consensus       179 ~~~~~~~~~g~~i~~~~~~~l~~~~-g~~~~f~~~~~~~~~~~i~~~  224 (288)
                      +.++...++|..++|.+.|.+.+.. +|+..|++.+++.+++.+...
T Consensus       372 g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~~~  418 (455)
T TIGR00892       372 GLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLFLA  418 (455)
T ss_pred             hHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHHHH
Confidence            9999999999999999999998877 498889888877666554433

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.45  E-value=1e-11  Score=113.83  Aligned_cols=169  Identities=8%  Similarity=-0.042  Sum_probs=140.1

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i  101 (288)
                      +.++..+...++...+.....++.+.|+++ .|.++.+.+.......+...+..++.|++.||+ |+|+.+.++.+...+
T Consensus       205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~  282 (382)
T TIGR00902       205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVG  282 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHH
Confidence            456666667777777788888899999975 899999999998888888889999999999998 999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 023063          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (288)
Q Consensus       102 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (288)
                      ..+......                      +.+.+++..++.++..+...+....++.+. |++      .++...+.+
T Consensus       283 ~~~~~~~~~----------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~------~~~~~q~~~  333 (382)
T TIGR00902       283 RWAIIGAIE----------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGS------EIAKLQALY  333 (382)
T ss_pred             HHHHHHhHh----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHh------hHHHHHHHH
Confidence            888777655                      667777788899999999999999999987 765      578888887


Q ss_pred             H-HHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHH
Q 023063          182 Y-FVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIA  222 (288)
Q Consensus       182 ~-~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~  222 (288)
                      + ....+|..+++.++|++.+++|+ ..|++.+++.+++++.
T Consensus       334 ~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       334 NALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            6 46789999999999999999886 5677666666555443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.44  E-value=7.2e-12  Score=117.60  Aligned_cols=196  Identities=13%  Similarity=0.098  Sum_probs=131.7

Q ss_pred             hHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHh----ccchhHHHHHH-HH
Q 023063           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADA----YAGRFWTITIA-SI   97 (288)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr----~~Grr~~i~~~-~~   97 (288)
                      ++..+....+...+++-...++++.|+ +++|.+....+++..+..+...+.+|+.|+++||    + ||||.++++ ..
T Consensus         5 ~li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-GRRrp~il~g~~   82 (477)
T TIGR01301         5 KLLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-GRRRPFIAAGAA   82 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-CChHHHHHHHHH
Confidence            344455566666777777777788887 4699999999999999999999999999999995    6 999988875 55


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhH
Q 023063           98 IYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  177 (288)
Q Consensus        98 l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (288)
                      ...++.+++..+..+......     ..-........+...++..+..++.....+...++++|.+|++++    +++.+
T Consensus        83 ~~~~~l~ll~~~~~~~~~~~~-----~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~----~~~~a  153 (477)
T TIGR01301        83 LVAFAVILIGFAADIGHLFGD-----NLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDAR----RTRIA  153 (477)
T ss_pred             HHHHHHHHHHhCchhhhhccc-----cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhH----HHHHH
Confidence            555555555543311100000     000000000113344445556677777888889999999998741    23678


Q ss_pred             HHHHHHHHHHHHHHHHHhHhhe--eecc-------------chhhhhhHhHHHHHHHHHHHHHhccc
Q 023063          178 FNWYYFVMGAAILVAVTVLVYI--QDNI-------------GWGWGLGIPTFAMFLSIIAFLIGYPL  229 (288)
Q Consensus       178 ~~~~~~~~~~g~~i~~~~~~~l--~~~~-------------g~~~~f~~~~~~~~~~~i~~~~~~~~  229 (288)
                      .++.+...++|+.+++.++++.  ...+             +.+..|++.+++.++..++..+..++
T Consensus       154 ~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E  220 (477)
T TIGR01301       154 NAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKE  220 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeec
Confidence            8899999999999999988754  1111             45677888777776666555554444

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.44  E-value=6.7e-13  Score=102.76  Aligned_cols=131  Identities=11%  Similarity=0.178  Sum_probs=109.0

Q ss_pred             HHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHH
Q 023063           66 NFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAA  145 (288)
Q Consensus        66 ~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  145 (288)
                      ...++..++.++.|+++||+ |||+.+..+..+..++.+......                      +.+.+.+.+++.+
T Consensus         6 ~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~g   62 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALSS----------------------NITVLIIARFLQG   62 (141)
T ss_pred             eehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHhc----------------------cHHHHHHHHHHHH
Confidence            34567778899999999998 999999999888888877666544                      5666777788899


Q ss_pred             HhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHH
Q 023063          146 LGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (288)
Q Consensus       146 ~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~  225 (288)
                      ++.+...+...++..|.+|++      +|++..+..+....+|..+++.+.+.+.+..+|+..|.+..+..++..+....
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (141)
T TIGR00880        63 FGAAFALVAGAALIADIYPPE------ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAF  136 (141)
T ss_pred             HHHHHHHHhHHHHHHHHCChh------hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhh
Confidence            999888889999999999987      69999999999999999999999999988889988888777666555554444

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.41  E-value=2.4e-11  Score=115.25  Aligned_cols=180  Identities=12%  Similarity=0.035  Sum_probs=127.4

Q ss_pred             HHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHH-HHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 023063           24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLT-NFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (288)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~  102 (288)
                      .+.++...++...+.+....+.+.|+.+++|++..+.+.+.. ...++..++.+++|+++||+ |+|+.+.++.++..++
T Consensus       224 ~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~  302 (491)
T PRK11010        224 AWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVS  302 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHH
Confidence            344444445555565566677888988889999999999874 55678899999999999998 9998877766555554


Q ss_pred             HHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHH
Q 023063          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (288)
Q Consensus       103 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (288)
                      .+.......                  .+.+.+.+.+..++..+..|...+...++..+..+++      ..++.++..+
T Consensus       303 ~l~~~~l~~------------------~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~------~~~t~~gl~~  358 (491)
T PRK11010        303 NAGYWLLSI------------------TDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKS------FSATQFALLS  358 (491)
T ss_pred             HHHHHHHHh------------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------CcHHHHHHHH
Confidence            433332110                  0112333334444444444444456678888888887      4777888888


Q ss_pred             HHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHHhcc
Q 023063          183 FVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYP  228 (288)
Q Consensus       183 ~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~~~  228 (288)
                      ...++|..+++.+.|++.+.+||+..|.+..++.+.+++.....++
T Consensus       359 s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~  404 (491)
T PRK11010        359 ALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ  404 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8889999989889999999999999998888888777766665543

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.41  E-value=8.1e-12  Score=113.46  Aligned_cols=155  Identities=14%  Similarity=0.125  Sum_probs=111.0

Q ss_pred             HHHHhHHhcC--CCHHHHHHHHHHH-----HHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 023063           45 MISYLTTQLH--MPLTKAANTLTNF-----GGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRP  117 (288)
Q Consensus        45 l~~yl~~~~~--~~~~~~~~~~~~~-----~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~  117 (288)
                      ...++.++..  .++++.+.+.+..     .+...++.++.|+++||+ |||+++..+.++..++.+++.+...++..  
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~--   91 (394)
T TIGR00883        15 AAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLLPSYATI--   91 (394)
T ss_pred             HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhCCChhhh--
Confidence            4445554433  3445554443322     223346789999999998 99999999999999998888765411100  


Q ss_pred             CCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHh
Q 023063          118 PPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLV  197 (288)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~  197 (288)
                                  .......+++.|+++|++.+...+...++++|.++++      +|+...+..+.+..+|..+++.+..
T Consensus        92 ------------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~G~~i~~~~~~  153 (394)
T TIGR00883        92 ------------GIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPG------KRGFYGSFQQVGAPVGLLLAALTVL  153 (394)
T ss_pred             ------------HHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcc------cchHHHHHHHHHHHHHHHHHHHHHH
Confidence                        0001235778899999999999999999999999887      6999999999999999999988765


Q ss_pred             hee--------eccchhhhhhHhHHHHHHHH
Q 023063          198 YIQ--------DNIGWGWGLGIPTFAMFLSI  220 (288)
Q Consensus       198 ~l~--------~~~g~~~~f~~~~~~~~~~~  220 (288)
                      .+.        +..+|+..|.+.++..++..
T Consensus       154 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  184 (394)
T TIGR00883       154 LLSYLLGDDALLEWGWRIPFLVSAVLVLIGL  184 (394)
T ss_pred             HHHHhcCHHHhhccchHHHHHHHHHHHHHHH
Confidence            542        35689988887666554443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.41  E-value=2.1e-11  Score=114.79  Aligned_cols=185  Identities=15%  Similarity=0.123  Sum_probs=150.0

Q ss_pred             cchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchh--HHHHHHHHH
Q 023063           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRF--WTITIASII   98 (288)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr--~~i~~~~~l   98 (288)
                      .|.+..-++..++.+-+...+......|.++++|++..+...+..+..+.+.++..++|++.||+ |.|  ++++++.++
T Consensus       280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~~  358 (477)
T PF11700_consen  280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLIL  358 (477)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHH
Confidence            35666667788888888889999999999999999999999999999999999999999999998 988  888887766


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHH
Q 023063           99 YQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  178 (288)
Q Consensus        99 ~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (288)
                      +.+..+.-.+.. .+...             ...+.+.+++.-++.|+..|...+..-++.+|..|++      +.+.++
T Consensus       359 ~~~i~~~g~~G~-~~~~~-------------g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g------~e~efF  418 (477)
T PF11700_consen  359 WIIIPLYGLFGF-WPSFF-------------GLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPG------REAEFF  418 (477)
T ss_pred             HHHHHHHHHHHh-hhccc-------------CcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCc------hhhHHH
Confidence            644333322211 11100             0115566777778899999999999999999999998      689999


Q ss_pred             HHHHHHHHHHHHHHHHhHhheeeccc-hhhhhhHhHHHHHHHHHHHHHh
Q 023063          179 NWYYFVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLSIIAFLIG  226 (288)
Q Consensus       179 ~~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~i~~~~~  226 (288)
                      +.+.+.....+.+||.+.+.+.+.+| .|.++....++.+++++++...
T Consensus       419 gly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v  467 (477)
T PF11700_consen  419 GLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFV  467 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999988887 7888888888777777776554

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK10504 putative transporter; Provisional

Probab=99.40  E-value=1.6e-11  Score=115.53  Aligned_cols=157  Identities=10%  Similarity=0.044  Sum_probs=120.2

Q ss_pred             hHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 023063           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (288)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~  102 (288)
                      .+...+...++...++.......|.|++..+|.++.+.++......+...++.++.|+++||+ |||+++..+..+..++
T Consensus       262 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~  340 (471)
T PRK10504        262 TFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLALV  340 (471)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHH
Confidence            444555566666666655566788888888999999999988888888888889999999998 9999999888877777


Q ss_pred             HHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHH
Q 023063          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (288)
Q Consensus       103 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (288)
                      .+++....                   .....+.+.+..++.|++.+...+....+..+..|++      .++..+++.+
T Consensus       341 ~~~~~~~~-------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~  395 (471)
T PRK10504        341 SLLFMLVA-------------------LLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDN------LASSGNSLLS  395 (471)
T ss_pred             HHHHHhcc-------------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH------hccchHHHHH
Confidence            66555422                   0112333344556677888877788888888888876      6999999999


Q ss_pred             HHHHHHHHHHHHhHhheeeccch
Q 023063          183 FVMGAAILVAVTVLVYIQDNIGW  205 (288)
Q Consensus       183 ~~~~~g~~i~~~~~~~l~~~~g~  205 (288)
                      ....+|..+++.+.+.+.+..|+
T Consensus       396 ~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        396 MIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999998877665554

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.40  E-value=1.4e-11  Score=114.67  Aligned_cols=166  Identities=13%  Similarity=0.022  Sum_probs=115.2

Q ss_pred             hhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 023063           41 FNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPC  120 (288)
Q Consensus        41 ~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~  120 (288)
                      +..+.+.+ .+++|++..+.+.......++..++.+++|+++||+ |||+.+.++.++..++.+++..........    
T Consensus       303 ~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  376 (481)
T TIGR00879       303 IMYYSPTI-FENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICLFVLGILGASFVTG----  376 (481)
T ss_pred             hHHHHHHH-HHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHhhcccCC----
Confidence            33444444 456899998888888888899999999999999998 999999988887777776665322100000    


Q ss_pred             CCcccccccccchHHHHHHHH-HHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhhe
Q 023063          121 EGEQVCQEANKGQVAILYVSL-LLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYI  199 (288)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~-~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l  199 (288)
                             .........+.... +..+.+. ...+....++.|.+|++      .|+...+..+...++|+.++|.+.+.+
T Consensus       377 -------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~------~~~~~~~~~~~~~~lg~~i~~~~~~~~  442 (481)
T TIGR00879       377 -------SSKSSGNVAIVFILLFIAFFAM-GWGPVPWVIVSEIFPLS------LRPKGISIAVAANWLANFIVGFLFPTM  442 (481)
T ss_pred             -------cccchhHHHHHHHHHHHHHHHc-cccCeehhhhhccCChH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   00000112222222 2222232 23456667789999987      699999999999999999999999998


Q ss_pred             eeccchhhhhhHhHHHHHHHHHHHHHh
Q 023063          200 QDNIGWGWGLGIPTFAMFLSIIAFLIG  226 (288)
Q Consensus       200 ~~~~g~~~~f~~~~~~~~~~~i~~~~~  226 (288)
                      .++.+|+..|++.+++.+++.+...+.
T Consensus       443 ~~~~~~~~~f~~~~~~~~~~~i~~~~~  469 (481)
T TIGR00879       443 LESIGVGGVFIFFGGLNVLGLIFVYFF  469 (481)
T ss_pred             HHhcCccceehhHHHHHHHHHHHHhee
Confidence            888899988888877766665554443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.39  E-value=3.8e-11  Score=107.93  Aligned_cols=135  Identities=14%  Similarity=0.109  Sum_probs=117.3

Q ss_pred             hhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 023063           41 FNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPC  120 (288)
Q Consensus        41 ~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~  120 (288)
                      ....+...+++.++.+..+++++...+..++.++.+..|++.+|+ |+|+.+++|+.++.+|..+++-++          
T Consensus        31 l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~lF~pAa----------   99 (422)
T COG0738          31 LNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAALFWPAA----------   99 (422)
T ss_pred             cchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhhhh----------
Confidence            345677888999999999999999999999999999999999998 999999999999999999887554          


Q ss_pred             CCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhhee
Q 023063          121 EGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQ  200 (288)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~  200 (288)
                               ....+..++.+.++.+.|.+...+..+++++...+++      .-..-.+..+....+|+.++|.+++++.
T Consensus       100 ---------~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~------~a~~rlnl~q~fn~lGa~~gp~~g~~li  164 (422)
T COG0738         100 ---------SSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPE------SAAFRLNLAQAFNGLGAILGPLLGSSLI  164 (422)
T ss_pred             ---------hhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCch------hHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence                     2236778888899999999999999999999999886      3445567777888999999999998765


Q ss_pred             e
Q 023063          201 D  201 (288)
Q Consensus       201 ~  201 (288)
                      .
T Consensus       165 l  165 (422)
T COG0738         165 L  165 (422)
T ss_pred             H
Confidence            5

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.39  E-value=1.5e-11  Score=117.45  Aligned_cols=154  Identities=11%  Similarity=0.152  Sum_probs=118.2

Q ss_pred             hhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 023063           43 TNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEG  122 (288)
Q Consensus        43 ~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~  122 (288)
                      .....+...++|-+ .+..|+.+...+...++.++.|.|+|.+ |||+.++.+.++..+|.+..+-+.            
T Consensus        64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA~------------  129 (599)
T PF06609_consen   64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATAQ------------  129 (599)
T ss_pred             HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcCC------------
Confidence            34456777788775 4556778888899999999999999998 999999999999999999998776            


Q ss_pred             cccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhheeec
Q 023063          123 EQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN  202 (288)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~  202 (288)
                                +...+.++..+.|+|.|... .....++|..|.+      .|.....+.....-+...+++.++..+..+
T Consensus       130 ----------~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k------~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~  192 (599)
T PF06609_consen  130 ----------NMNTFIAGMVLYGVGAGVQE-LAALAISELVPNK------WRGLGLAIASIPFIITTWISPLIAQLFAAH  192 (599)
T ss_pred             ----------cHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccc------hhhhHhHHHHHHHHhhhcccHHHHHHhccC
Confidence                      67778889999999977655 4455689999876      566665555554444444566666555556


Q ss_pred             cchhhhhhHhHHHHHHHHHHHHHhc
Q 023063          203 IGWGWGLGIPTFAMFLSIIAFLIGY  227 (288)
Q Consensus       203 ~g~~~~f~~~~~~~~~~~i~~~~~~  227 (288)
                      .+||+.|++..+...++++...++.
T Consensus       193 ~~WRw~~~~~~i~~~i~~vl~~~fY  217 (599)
T PF06609_consen  193 SGWRWIFYIFIIWSGIALVLIFFFY  217 (599)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHh
Confidence            6899999998887777666544443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.39  E-value=1.3e-11  Score=115.28  Aligned_cols=182  Identities=13%  Similarity=0.095  Sum_probs=120.1

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i  101 (288)
                      +.++.+.+..++.....+++..++|.|+++..|+++.++++......+...++.+++|+++||+ |+++....+..+..+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~  329 (438)
T TIGR00712       251 KLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTL  329 (438)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHH
Confidence            3455555666666677788889999999988899999999998889899999999999999998 754433333322222


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 023063          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (288)
Q Consensus       102 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (288)
                      ..+........+                 ..+.+......++.+++.............|.+|++      .|+++.++.
T Consensus       330 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~  386 (438)
T TIGR00712       330 VTIAVIVYWMNP-----------------AGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKK------AAGTAAGFT  386 (438)
T ss_pred             HHHHHHHHHhcC-----------------CCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChh------heeeehhhh
Confidence            111111100000                 012222233333444433222222234567888877      699999999


Q ss_pred             HHHHHHHH-HHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHHhc
Q 023063          182 YFVMGAAI-LVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGY  227 (288)
Q Consensus       182 ~~~~~~g~-~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~~  227 (288)
                      +...++|+ .++|.+.|.+.++.||...|.+..++.+++.+..+...
T Consensus       387 ~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  433 (438)
T TIGR00712       387 GLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM  433 (438)
T ss_pred             chHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence            88878775 68999999999988999988877776666665544443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.38  E-value=6e-11  Score=107.79  Aligned_cols=179  Identities=13%  Similarity=0.103  Sum_probs=142.2

Q ss_pred             CcchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHH
Q 023063           20 GMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIY   99 (288)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~   99 (288)
                      +.+.++..+...++...+.|...+|+-.++++..|++....+++...+.++..++..++|+++||  +.|+++.....+.
T Consensus       209 ~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~  286 (394)
T COG2814         209 RRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLL  286 (394)
T ss_pred             cCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHH
Confidence            34567777788888888999999999999999999999999999999999999999999999999  7888888887777


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHH
Q 023063          100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (288)
Q Consensus       100 ~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (288)
                      .+..+.+.+..                     .+.+...+..++.++...........-.++..|+       .+....+
T Consensus       287 a~~~l~l~~~~---------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~-------~~~~a~s  338 (394)
T COG2814         287 ALALLALTFTG---------------------ASPALALALLFLWGFAFSPALQGLQTRLARLAPD-------AADLAGS  338 (394)
T ss_pred             HHHHHHHHHhc---------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCC-------chHHHHH
Confidence            77776666544                     1344555555556666655444444445553334       4788888


Q ss_pred             HHHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHHhcc
Q 023063          180 WYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYP  228 (288)
Q Consensus       180 ~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~~~  228 (288)
                      ......|+|..+|..++|.+.+++|+....++.+++.+++++......+
T Consensus       339 l~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~  387 (394)
T COG2814         339 LNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR  387 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8889999999999999999999999999999999888888776666544

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.38  E-value=4.4e-11  Score=112.42  Aligned_cols=178  Identities=16%  Similarity=-0.004  Sum_probs=121.2

Q ss_pred             cchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHH--------H
Q 023063           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWT--------I   92 (288)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~--------i   92 (288)
                      ++.+|.+.+..++....++.+..++|.|+.+.+|++..+.++......++..++.+++|+++||+ ++|+.        +
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~~  338 (465)
T TIGR00894       260 SLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARKI  338 (465)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHH
Confidence            35677788888888899999999999999999999999999999999999999999999999997 64421        1


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhh
Q 023063           93 TIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQAT  172 (288)
Q Consensus        93 ~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~  172 (288)
                      ..+......+..+..... .                  ..+.....+...+.+.+.+...+.......|..|.       
T Consensus       339 ~~~~~~~~~~~~~~~~~~-~------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------  392 (465)
T TIGR00894       339 FNGIGGLGPGIFAYALPY-L------------------SAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-------  392 (465)
T ss_pred             HHHHHHHHHHHHHHHHHH-c------------------CCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-------
Confidence            111111111111111111 0                  00223333334444455554444444455565554       


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhHhheeecc---chhhhhhHhHHHHHHHHHHHHH
Q 023063          173 KTWKYFNWYYFVMGAAILVAVTVLVYIQDNI---GWGWGLGIPTFAMFLSIIAFLI  225 (288)
Q Consensus       173 ~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~---g~~~~f~~~~~~~~~~~i~~~~  225 (288)
                      .+|...++.+...++|+.++|.+.+++.+..   +|+..|.+.++..+++.+....
T Consensus       393 ~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~  448 (465)
T TIGR00894       393 FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI  448 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence            5899999999999999999999999887653   3777888777766666555443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.37  E-value=5.2e-11  Score=113.37  Aligned_cols=177  Identities=15%  Similarity=0.097  Sum_probs=138.0

Q ss_pred             HHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Q 023063           27 IFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICL  106 (288)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~  106 (288)
                      +.......+++.+....-++-++. +..-|+...+++.....+-..+..+++|.++||+ .|||.++.+-++..+..+.+
T Consensus        15 lw~a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~~~~~L   92 (524)
T PF05977_consen   15 LWIAQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRALVALLL   92 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHHHHH
Confidence            335555666666555555554544 4567899999999999999999999999999998 99999999988777666655


Q ss_pred             HHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHH
Q 023063          107 TISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMG  186 (288)
Q Consensus       107 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (288)
                      .+....                 ...+++.+++..++.|++.+...|...+++.|..|++      +...+.+......|
T Consensus        93 ~~l~~~-----------------~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~------~L~~A~al~s~~~n  149 (524)
T PF05977_consen   93 AVLAFF-----------------GLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKE------DLPAANALNSISFN  149 (524)
T ss_pred             HHHHHh-----------------CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh------hHHHHHHHHHHHHH
Confidence            544311                 1226777888888999999999999999999999987      68899999999999


Q ss_pred             HHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHHhcc
Q 023063          187 AAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYP  228 (288)
Q Consensus       187 ~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~~~  228 (288)
                      +...+||.++|.+....|-...|.+-++..++.++.+...++
T Consensus       150 iar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~  191 (524)
T PF05977_consen  150 IARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKP  191 (524)
T ss_pred             HHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            999999999999888888888888877766655544444433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.36  E-value=2.3e-11  Score=112.86  Aligned_cols=164  Identities=9%  Similarity=-0.019  Sum_probs=114.0

Q ss_pred             hHHHHHHHHHHHHHhHHhhhhhHHHHhHH-hcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHH-HHHHHHHHH
Q 023063           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTT-QLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWT-ITIASIIYQ  100 (288)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~-i~~~~~l~~  100 (288)
                      .+|......++....++++..++|.|+++ ..|.+..+++.......++..++.+++|+++||+ |||+. +.....+..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~~  321 (412)
T TIGR02332       243 AIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFAA  321 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHHH
Confidence            45566677777888889999999999976 3477888889888999999999999999999998 87764 333333333


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 023063          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (288)
Q Consensus       101 i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (288)
                      ++.+ +....                   .  +......+..+.++|.....+.......|.+|++      +|+.++++
T Consensus       322 ~~~~-~~~~~-------------------~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~~~~a~g~  373 (412)
T TIGR02332       322 AGWL-LASAT-------------------D--HNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQ------ARAIAIAV  373 (412)
T ss_pred             HHHH-HHHhc-------------------C--CHHHHHHHHHHHHHHhhhhhhHHHhhcccccchH------HHHHHHHH
Confidence            3322 11111                   0  1111222222333343333333444556677766      69999999


Q ss_pred             HHHHHHHHHHHHHHhHhheeeccc-hhhhhhHhHHH
Q 023063          181 YYFVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFA  215 (288)
Q Consensus       181 ~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~~~~~~  215 (288)
                      .+...++|+.++|.+.+.+.+..| |+..|++.+++
T Consensus       374 ~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       374 INATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             HHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence            999999999999999999988875 88888766553

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.36  E-value=4e-11  Score=107.13  Aligned_cols=162  Identities=12%  Similarity=0.066  Sum_probs=121.0

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHh--cCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQ--LHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIY   99 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~   99 (288)
                      +..+...+..++...+-.++..|++.|+.+.  +|+++.+++...+.+..+..++..+++++.||+ |+||.+.++..+.
T Consensus       140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l~  218 (310)
T TIGR01272       140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFLA  218 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHH
Confidence            3444444455554445556778899999854  799999999999999999999999999999998 9999988888777


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHH
Q 023063          100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (288)
Q Consensus       100 ~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (288)
                      .++.++.....                      ... ...+..+.|++.+.++|...+...+.++++       .+.+.+
T Consensus       219 ~~~~~l~~~~~----------------------~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~-------~~~asa  268 (310)
T TIGR01272       219 VLLSIGAALTH----------------------GYV-AMWFVLALGLFNSIMFPTIFSLALNALGRH-------TSQGSG  268 (310)
T ss_pred             HHHHHHHHHcC----------------------CHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-------hhhhHH
Confidence            77664444322                      111 123455788999999999999988888875       233333


Q ss_pred             HHHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHH
Q 023063          180 WYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFA  215 (288)
Q Consensus       180 ~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~  215 (288)
                      .. ....+|+.+.|.+.|.+.+..|.+.+|++..++
T Consensus       269 i~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~  303 (310)
T TIGR01272       269 IL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC  303 (310)
T ss_pred             HH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence            43 456799999999999999988888887755443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK09669 putative symporter YagG; Provisional

Probab=99.35  E-value=2.1e-11  Score=114.11  Aligned_cols=171  Identities=11%  Similarity=0.111  Sum_probs=117.8

Q ss_pred             HHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhc---cchh-HHHHHHHHHHHHHHH
Q 023063           29 SNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAY---AGRF-WTITIASIIYQIGMI  104 (288)
Q Consensus        29 ~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~---~Grr-~~i~~~~~l~~i~~~  104 (288)
                      +..+..+..+..+..+++.|+++++|+++.+++.+..+..+...+..|+.|+++||.   +||| +.++.+.+...++.+
T Consensus        16 ~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~   95 (444)
T PRK09669         16 LGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCL   95 (444)
T ss_pred             chhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHH
Confidence            344555556666678899999999999999999999999999999999999999993   3875 455566666666655


Q ss_pred             HHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHH
Q 023063          105 CLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV  184 (288)
Q Consensus       105 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (288)
                      ++...   |.+.             .....+.+++..++.+.+..+......++.+|+.++.+     +|++..++....
T Consensus        96 l~f~~---p~~~-------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~-----eR~~l~~~r~~~  154 (444)
T PRK09669         96 LTFYT---PDFG-------------ATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPR-----ERHSLQSWRFAL  154 (444)
T ss_pred             HHHhC---CCCC-------------cchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHH-----HHHHHHHHHHHH
Confidence            44432   2211             12234455555566677777777788899999886543     688888888888


Q ss_pred             HHHHHHHHHHhHhheee-------ccchhhhhhHhHHHHHHHH
Q 023063          185 MGAAILVAVTVLVYIQD-------NIGWGWGLGIPTFAMFLSI  220 (288)
Q Consensus       185 ~~~g~~i~~~~~~~l~~-------~~g~~~~f~~~~~~~~~~~  220 (288)
                      .++|+.+++.+...+..       ..||+..+.+.+++..+..
T Consensus       155 ~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~  197 (444)
T PRK09669        155 SFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLF  197 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence            88888777654433221       2356665555555444433

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.34  E-value=4.4e-11  Score=107.62  Aligned_cols=155  Identities=13%  Similarity=0.096  Sum_probs=124.1

Q ss_pred             chHHHHHHHHHHHHHhHHhhh-hhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFN-TNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ  100 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~-~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~  100 (288)
                      +.++......++....++... .+.|.|+++.+|.+..+.+.+.....++..++.++.|++.||+ |||+.+..+..+..
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~  288 (365)
T TIGR00900       210 PLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIG  288 (365)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHH
Confidence            345555555555666665555 6778888877999999999999999999999999999999998 99999888776666


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 023063          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (288)
Q Consensus       101 i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (288)
                      ++.+......                    + +.+.+.+..++.|++.+...+...+++.|.+|++      +|++..+.
T Consensus       289 ~~~~~~~~~~--------------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~  341 (365)
T TIGR00900       289 LAILVVGLTP--------------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAE------LLGRVFGA  341 (365)
T ss_pred             HHHHHHHhhc--------------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH------HHHHHHHH
Confidence            6655554433                    1 2566667778889999988888999999999987      69999999


Q ss_pred             HHHHHHHHHHHHHHhHhheeeccc
Q 023063          181 YYFVMGAAILVAVTVLVYIQDNIG  204 (288)
Q Consensus       181 ~~~~~~~g~~i~~~~~~~l~~~~g  204 (288)
                      ++...++|..++|.+.|++.+++|
T Consensus       342 ~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       342 QFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999998877543

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.34  E-value=8.8e-11  Score=109.72  Aligned_cols=187  Identities=13%  Similarity=0.092  Sum_probs=131.7

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i  101 (288)
                      +.+|.+.+..++..-+|.++..++|.|+++.+  +.........+..+...+..|++|+++||+ |++|++.++.+...+
T Consensus       252 ~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i  328 (462)
T PRK15034        252 LHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAI  328 (462)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHH
Confidence            45677777777776677777778999998755  333333334455678889999999999998 999999998887777


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCC--------------
Q 023063          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETD--------------  167 (288)
Q Consensus       102 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~--------------  167 (288)
                      +.....+..  |.-              ...+.+.+.+..+...++.|.-++.+..++.+.+|++.              
T Consensus       329 ~~~~~~l~l--p~~--------------~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~  392 (462)
T PRK15034        329 FSALLFLTL--PGT--------------GSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQA  392 (462)
T ss_pred             HHHHHHHHh--ccc--------------cccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHH
Confidence            665443322  210              11255666666666677778888888888888887410              


Q ss_pred             -hhhhhhhhhHHHHHHHHHHHHHHHHHHhHhheeeccc-hhhhhhHhHHHHHHHHHHHHHhc
Q 023063          168 -PKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLSIIAFLIGY  227 (288)
Q Consensus       168 -~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~i~~~~~~  227 (288)
                       ...+++.|...++......+|+++-|.+.+...+.+| +...|++..++.+++.++-+...
T Consensus       393 ~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y  454 (462)
T PRK15034        393 QREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVY  454 (462)
T ss_pred             hhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence             0112356788888889999999999988777666554 77788888777777776666554

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.34  E-value=2.6e-10  Score=105.18  Aligned_cols=169  Identities=10%  Similarity=-0.112  Sum_probs=122.2

Q ss_pred             hHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 023063           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (288)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~  102 (288)
                      .++...+..++.....+......|.|+.+++|+++.+.+.......++..++.++.|+++||+ |+|+.+.++.++..++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g  294 (406)
T PRK15402        216 RFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAG  294 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence            445444444455555556666678888888999999998887777778888999999999998 9999999988877777


Q ss_pred             HHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHH
Q 023063          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (288)
Q Consensus       103 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (288)
                      .++.......                 .+.+.+.+.++.++.++|.+...+..........+ +      ++++..+.++
T Consensus       295 ~~~~~~~~~~-----------------~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~-~------~~g~~~~~~~  350 (406)
T PRK15402        295 LLLAALATVI-----------------SSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFSSD-V------SKGTVSAAMG  350 (406)
T ss_pred             HHHHHHHHHc-----------------ccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcc-c------cccHHHHHHH
Confidence            7766653310                 11134556677778888888766665554433323 3      5999999999


Q ss_pred             HHHHHHHHHHHHhHhheeeccchhhhhhHhHHHH
Q 023063          183 FVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAM  216 (288)
Q Consensus       183 ~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~  216 (288)
                      +...+|..+++.+.+.+.+..++....+...+..
T Consensus       351 ~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~  384 (406)
T PRK15402        351 MLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANG  384 (406)
T ss_pred             HHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHH
Confidence            9999999999999999888777655444433333

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.33  E-value=1.2e-10  Score=107.93  Aligned_cols=144  Identities=15%  Similarity=0.043  Sum_probs=105.2

Q ss_pred             hHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 023063           37 AVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLR  116 (288)
Q Consensus        37 ~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~  116 (288)
                      ..+.+..++|.|+++ .|.++.+.+.......++..++.+++|+++||+ |||+.+..+.++..+..++.....      
T Consensus       246 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~------  317 (426)
T PRK12307        246 ANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRIP------  317 (426)
T ss_pred             HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHc------
Confidence            334456778888875 699999999888888899999999999999998 999998888776665544433222      


Q ss_pred             CCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhH
Q 023063          117 PPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVL  196 (288)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~  196 (288)
                                   .+ ....+....+..+++..+..+..+.++.|.+|++      .|++..+..+....+|+.++|.+.
T Consensus       318 -------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~~~~~gp~~~  377 (426)
T PRK12307        318 -------------QD-NYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLE------VRGLGTGLIYNLAATSGTFNSMAA  377 (426)
T ss_pred             -------------cc-cHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHH------HHhhhhhHHHHHHhHHHHHHHHHH
Confidence                         00 1121212222222233334456678889999987      699999999999999999999999


Q ss_pred             hheeeccchhhh
Q 023063          197 VYIQDNIGWGWG  208 (288)
Q Consensus       197 ~~l~~~~g~~~~  208 (288)
                      +++.+..|+...
T Consensus       378 g~l~~~~g~~~~  389 (426)
T PRK12307        378 TWLGITMGLGAA  389 (426)
T ss_pred             HHHHHcccHHHH
Confidence            999888886543

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.32  E-value=5.4e-11  Score=112.94  Aligned_cols=154  Identities=8%  Similarity=-0.031  Sum_probs=124.1

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i  101 (288)
                      +.........++...++++...++|.|+++.+|+++.+++.......+...++.++.|++.||+ |+|+.+..+.++..+
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~  337 (495)
T PRK14995        259 RIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSAL  337 (495)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence            3444455566666777778888899999999999999999999999999999999999999998 999999888888877


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 023063          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (288)
Q Consensus       102 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (288)
                      +.+++....                   ...+.+......++.|+|.|...+.......+..|++      +++...+.+
T Consensus       338 ~~~~l~~~~-------------------~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~------~~g~~~~~~  392 (495)
T PRK14995        338 SFYGLAMTD-------------------FSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPE------KAAAAGAIE  392 (495)
T ss_pred             HHHHHHHhc-------------------CCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHH------hcchHHHHH
Confidence            776655432                   1113344455677889999988887888888888877      699999999


Q ss_pred             HHHHHHHHHHHHHhHhheee
Q 023063          182 YFVMGAAILVAVTVLVYIQD  201 (288)
Q Consensus       182 ~~~~~~g~~i~~~~~~~l~~  201 (288)
                      +...++|+.+|+.+.+.+.+
T Consensus       393 ~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        393 TMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999887644

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.32  E-value=4e-11  Score=112.85  Aligned_cols=156  Identities=13%  Similarity=0.084  Sum_probs=124.5

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i  101 (288)
                      +.++...+..++..+.+++...++|.|+++.+|+++.++++......++..++.++.|++.||+ |||+.+.++..+..+
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~  333 (485)
T TIGR00711       255 RNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAV  333 (485)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHH
Confidence            3444455666677778888888899999999999999999999999999999999999999998 999999988888877


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 023063          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (288)
Q Consensus       102 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (288)
                      +..++.... .                 .+.+.+.+....++.|+|.+...+.......+..|++      +++.+.+..
T Consensus       334 ~~~~~~~~~-~-----------------~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~------~~g~~~~~~  389 (485)
T TIGR00711       334 GFYWRAFTF-T-----------------PDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPH------KIARGSSLS  389 (485)
T ss_pred             HHHHHhccC-C-----------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH------HHhHHHHHH
Confidence            776665221 0                 1113445555677888998887777777777878776      699999999


Q ss_pred             HHHHHHHHHHHHHhHhheeec
Q 023063          182 YFVMGAAILVAVTVLVYIQDN  202 (288)
Q Consensus       182 ~~~~~~g~~i~~~~~~~l~~~  202 (288)
                      +...++|+.+++.+.+.+.++
T Consensus       390 ~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       390 NFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998877554

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.32  E-value=1.5e-10  Score=106.13  Aligned_cols=170  Identities=8%  Similarity=0.028  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHH
Q 023063           24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGM  103 (288)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~  103 (288)
                      .+......++...+.+....+++.|+.+.+|+++.+.+.......++..++.++.|+++||+ |+|+.+..+..+..++.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~  279 (382)
T PRK10091        201 PWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLAL  279 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHH
Confidence            44444444444455555566778888888899999999999999999999999999999998 99999988887777776


Q ss_pred             HHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhh-hhcccCCCChhhhhhhhhHHHHHH
Q 023063          104 ICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAF-GADQFDETDPKQATKTWKYFNWYY  182 (288)
Q Consensus       104 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  182 (288)
                      ++.....                    + +.+...+..++.++|.+...+..... ..+..+.+      .++...  .+
T Consensus       280 ~~~~~~~--------------------~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~--~~  330 (382)
T PRK10091        280 LMLFFFG--------------------G-MKTASLIFAFICCAGLFALSAPLQILLLQNAKGGE------LLGAAG--GQ  330 (382)
T ss_pred             HHHHHHH--------------------h-hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcch------HHHHHH--HH
Confidence            5554322                    0 22333334444555544444333333 33333332      344432  35


Q ss_pred             HHHHHHHHHHHHhHhheeec-cchhhhhhHhHHHHHHHHHHH
Q 023063          183 FVMGAAILVAVTVLVYIQDN-IGWGWGLGIPTFAMFLSIIAF  223 (288)
Q Consensus       183 ~~~~~g~~i~~~~~~~l~~~-~g~~~~f~~~~~~~~~~~i~~  223 (288)
                      ...++|..++|.+.|++.+. .+|+..+.+.+++.++.....
T Consensus       331 ~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~  372 (382)
T PRK10091        331 IAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSL  372 (382)
T ss_pred             HHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHH
Confidence            56789999999999988875 579888888776665554433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.31  E-value=2.3e-10  Score=104.84  Aligned_cols=167  Identities=8%  Similarity=-0.004  Sum_probs=125.7

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i  101 (288)
                      +.++..++..++....+.....+++.|+. +.|.+..+.+.+.+...+...+..++.|++.||+ |+|+.+..+.++..+
T Consensus       205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~  282 (382)
T PRK11128        205 PTVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVV  282 (382)
T ss_pred             hhHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHH
Confidence            44555555566666666666777888986 5899999999988888888888889999999998 999999988888777


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 023063          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (288)
Q Consensus       102 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (288)
                      +.++.....                      +.+.+++..++.|++.+...+....+..+. +++      ++++..+.+
T Consensus       283 ~~~~~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~  333 (382)
T PRK11128        283 RWGLMGSTT----------------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGS------EVIRLQALY  333 (382)
T ss_pred             HHHHHHhhh----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHh------hhHHHHHHH
Confidence            766655444                      566677778888888888777777777775 333      467777776


Q ss_pred             H-HHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHH
Q 023063          182 Y-FVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSI  220 (288)
Q Consensus       182 ~-~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~  220 (288)
                      + ....+|..++|.++|.+.+.+|+. .|+..+++.++++
T Consensus       334 ~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~~  372 (382)
T PRK11128        334 SALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPAL  372 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHH
Confidence            5 556778899999999999988874 5555555444443

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.31  E-value=2.2e-11  Score=115.43  Aligned_cols=174  Identities=16%  Similarity=0.132  Sum_probs=143.1

Q ss_pred             HHHHHHHHHHHHhHHhhh---hhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 023063           25 PFIFSNEVCEKLAVVGFN---TNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (288)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~---~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i  101 (288)
                      |.+.+..|+.+...+++.   ..+-..++++++.+..+++++.++...+..+..|+.+.+.||+ |.|.+++.|.+++.+
T Consensus        45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~~  123 (509)
T KOG2504|consen   45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAAL  123 (509)
T ss_pred             eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHHH
Confidence            334445555555555544   2344566788999999999999999999999999999999998 999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHH-HHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 023063          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSL-LLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (288)
Q Consensus       102 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (288)
                      |.++..++.                      +.+.+++.. ++.|+|.++........++..|++       +|+.+.++
T Consensus       124 g~~lssF~~----------------------~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~k-------kR~lA~Gi  174 (509)
T KOG2504|consen  124 GLLLSSFAT----------------------SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEK-------KRALATGI  174 (509)
T ss_pred             HHHHHHHHh----------------------hHHHHHHHHHHHhhccchhhhcchhhhhhhHhHH-------HHHHHHhh
Confidence            999999887                      677677665 677999999998888999988887       59999999


Q ss_pred             HHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHHhcc
Q 023063          181 YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYP  228 (288)
Q Consensus       181 ~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~~~  228 (288)
                      -..+..+|.++-|.+..++.+.+|||..+++...+.+-.++.....++
T Consensus       175 a~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp  222 (509)
T KOG2504|consen  175 AVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP  222 (509)
T ss_pred             hhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999888877766555555555554

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.31  E-value=1.3e-10  Score=108.58  Aligned_cols=140  Identities=13%  Similarity=0.154  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHH
Q 023063           61 ANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVS  140 (288)
Q Consensus        61 ~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (288)
                      +.+++++.+++.++..+.|+++||+ |||++++++.++..++.+++..+...                   ....++.++
T Consensus        63 S~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~-------------------~~~e~li~G  122 (485)
T KOG0569|consen   63 SLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSA-------------------PSFEMLILG  122 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHh-------------------hhHHHHHHH
Confidence            4467788899999999999999999 99999999999988888888776622                   256788999


Q ss_pred             HHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHh-h-eeeccchhhhhhHhHHHHHH
Q 023063          141 LLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLV-Y-IQDNIGWGWGLGIPTFAMFL  218 (288)
Q Consensus       141 ~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~-~-l~~~~g~~~~f~~~~~~~~~  218 (288)
                      |++.|+..|......+-|+.|..|++      .||........+..+|..++..++. . +.....|...+.+..+..++
T Consensus       123 R~i~Gl~~gl~~~~~pmyl~E~sP~~------~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~  196 (485)
T KOG0569|consen  123 RLIVGLACGLSTGLVPMYLTEISPKN------LRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALL  196 (485)
T ss_pred             HHHHHHHhHHHHHHHHHHHhhcChhh------hccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHH
Confidence            99999999999999999999999998      7999999999999999999966653 3 33445688888777776666


Q ss_pred             HHHHHHHh
Q 023063          219 SIIAFLIG  226 (288)
Q Consensus       219 ~~i~~~~~  226 (288)
                      .++...++
T Consensus       197 ~l~~l~~~  204 (485)
T KOG0569|consen  197 QLALLPFL  204 (485)
T ss_pred             HHHHHhcC
Confidence            55544443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.30  E-value=4.7e-11  Score=107.88  Aligned_cols=162  Identities=13%  Similarity=0.103  Sum_probs=115.4

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHH--HHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIAS--IIY   99 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~--~l~   99 (288)
                      +.++.+.+..++.....+.+..+++.|+.+.+|++..+.+.......+...++.++.|+++||..+||+......  ...
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~  295 (379)
T TIGR00881       216 KVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALI  295 (379)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            345556666666777777788889999999999999999999999999999999999999998624443332211  111


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHH
Q 023063          100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (288)
Q Consensus       100 ~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (288)
                      .++........                    ..+.....+..++.|+......+....+..|.+|++      .|++..+
T Consensus       296 ~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~g  349 (379)
T TIGR00881       296 IVSLLVYWLNP--------------------AANPLMDLICLFALGFLVYGPQMLIGVIASELAPKK------AAGTAAG  349 (379)
T ss_pred             HHHHHHHhcCc--------------------chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcc------hhHHHHH
Confidence            11111111100                    112333344445556555555566677889999887      6999999


Q ss_pred             HHHHHHHHHHHHHHHhHhheeeccchhhhh
Q 023063          180 WYYFVMGAAILVAVTVLVYIQDNIGWGWGL  209 (288)
Q Consensus       180 ~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f  209 (288)
                      +++...++|+.++|.+.|.+.+++||+..|
T Consensus       350 ~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       350 FVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             HHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            999999999999999999999999988654

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.30  E-value=1.5e-10  Score=99.73  Aligned_cols=156  Identities=14%  Similarity=0.092  Sum_probs=128.2

Q ss_pred             cCCcchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHH-H
Q 023063           18 KGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIA-S   96 (288)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~-~   96 (288)
                      +.....+|.+.+..++...+.+-+...-+.++++.+|+|+..++.+.+...+...+..++.|.++||+ |++-....+ .
T Consensus       260 ~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv~~a~  338 (459)
T KOG4686|consen  260 NTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWVASAC  338 (459)
T ss_pred             cccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhHHHHH
Confidence            34567889888888888888888888889999999999999999999999999999999999999999 998665555 4


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhh
Q 023063           97 IIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWK  176 (288)
Q Consensus        97 ~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (288)
                      +....+..++.++..                        --+.+..+.|+......-..++.++-..|++      +.|+
T Consensus       339 ~~tl~~H~~l~Ft~l------------------------sPy~~m~~lGLsysllAcslWP~va~~vpE~------qLGT  388 (459)
T KOG4686|consen  339 ILTLLGHSGLFFTFL------------------------SPYTSMTFLGLSYSLLACSLWPCVASLVPEE------QLGT  388 (459)
T ss_pred             HHHHHHhhhHHhhhc------------------------cHHHHHHHHhhhHHHHHHHHhhhhhhhCCHH------Hhcc
Confidence            555556666665441                        1245556777777776666788888888888      6999


Q ss_pred             HHHHHHHHHHHHHHHHHHhHhheeeccc
Q 023063          177 YFNWYYFVMGAAILVAVTVLVYIQDNIG  204 (288)
Q Consensus       177 ~~~~~~~~~~~g~~i~~~~~~~l~~~~g  204 (288)
                      +++..+...|+|-.+.|++.|.+.++-|
T Consensus       389 aygf~qsIqNLgla~i~Iiag~i~d~~g  416 (459)
T KOG4686|consen  389 AYGFIQSIQNLGLAFIPIIAGFIADGDG  416 (459)
T ss_pred             hHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence            9999999999999999999999988766

>TIGR00889 2A0110 nucleoside transporter

Probab=99.30  E-value=3.2e-10  Score=105.41  Aligned_cols=164  Identities=10%  Similarity=0.036  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccch-hHHHHHHHHHHHHHHHH
Q 023063           27 IFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGR-FWTITIASIIYQIGMIC  105 (288)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr-r~~i~~~~~l~~i~~~~  105 (288)
                      +-+..++...++-...++++.|+++++|++..+.+++.+...++..+++++.|.++||+ || |+++.++.++..++..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g~~r~~~~~~~~~~~~~~~~   85 (418)
T TIGR00889         7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-LSAQKVYAVCHFAGALLLFF   85 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHH
Confidence            33455555555555668899999999999999999999999999999999999999998 65 77777777766666666


Q ss_pred             HHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCC--hhhhhhhhhHHHHHHH
Q 023063          106 LTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETD--PKQATKTWKYFNWYYF  183 (288)
Q Consensus       106 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  183 (288)
                      ..+..                      +.+.+++.+++.+++.+...+...+...+...+..  ......|.+.++    
T Consensus        86 ~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G----  139 (418)
T TIGR00889        86 AAQVT----------------------TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG----  139 (418)
T ss_pred             HHHhc----------------------CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh----
Confidence            55443                      45666677777787766665555444322211000  000002334433    


Q ss_pred             HHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHH
Q 023063          184 VMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSI  220 (288)
Q Consensus       184 ~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~  220 (288)
                        .+|..++|.+++.+.....|. .|++.+++.++..
T Consensus       140 --~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~  173 (418)
T TIGR00889       140 --TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLG  173 (418)
T ss_pred             --hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHH
Confidence              367788888888764332343 4555554444433

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.29  E-value=1.1e-10  Score=110.30  Aligned_cols=147  Identities=10%  Similarity=0.053  Sum_probs=107.7

Q ss_pred             HHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHH----hccch-hHHHHHHHHHHHHHH
Q 023063           29 SNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVAD----AYAGR-FWTITIASIIYQIGM  103 (288)
Q Consensus        29 ~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD----r~~Gr-r~~i~~~~~l~~i~~  103 (288)
                      +..+..++.+..+..+++.|+++.+|+++..++.+..+.-+...+..|+.|+++|    |+ || |+-++.+.+.+.++.
T Consensus        13 ~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~-Grrrp~il~g~i~~~i~~   91 (473)
T PRK10429         13 FGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRW-GKFKPWILIGTLANSVVL   91 (473)
T ss_pred             cchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCC-CCcchhHhhhhHHHHHHH
Confidence            3445566667777788999999999999999999999999999999999999999    65 88 556666777766666


Q ss_pred             HHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHH
Q 023063          104 ICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF  183 (288)
Q Consensus       104 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (288)
                      +++....   ..             ++....+.+++..++..++.........++.+|+.++.+     +|.+..++...
T Consensus        92 ~llf~~p---~~-------------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~-----eR~~l~~~~~~  150 (473)
T PRK10429         92 FLLFSAH---LF-------------EGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKR-----EREQLVPYPRF  150 (473)
T ss_pred             HHHHcCC---CC-------------CccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHH-----HHHHHHHHHHH
Confidence            5554321   11             011123444455566778888888888999999886543     78888888777


Q ss_pred             HHHHHHHHHHHhHh
Q 023063          184 VMGAAILVAVTVLV  197 (288)
Q Consensus       184 ~~~~g~~i~~~~~~  197 (288)
                      ..++|+.+.+.+..
T Consensus       151 ~~~ig~~~~~~~~~  164 (473)
T PRK10429        151 FASLAGFVTAGFTL  164 (473)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777666655443

>TIGR00896 CynX cyanate transporter

Probab=99.29  E-value=1.9e-10  Score=104.16  Aligned_cols=154  Identities=10%  Similarity=-0.005  Sum_probs=115.3

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i  101 (288)
                      +..+.+.+..++....+++...++|.|+++ .|++..+.+.+.+...++..++.++.|+++||+-+||+.+..+.++..+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~  275 (355)
T TIGR00896       197 PLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLV  275 (355)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Confidence            344555555556677778888899999975 7999999999999999999999999999999982356667777777777


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 023063          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (288)
Q Consensus       102 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (288)
                      +.+.+....                      +.... ...++.|++.+...+...+.+.+..++++     +++...+..
T Consensus       276 ~~~~~~~~~----------------------~~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~-----~~g~~~~~~  327 (355)
T TIGR00896       276 GLCGLLFAP----------------------MHGLW-AWALVLGLGQGGAFPLALTLIGLRSRQAA-----QAAALSAMA  327 (355)
T ss_pred             HHHHHHHhh----------------------hhHHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHH-----HHHHHHHHH
Confidence            766555433                      11111 13456789998888877777666555432     578888888


Q ss_pred             HHHHHHHHHHHHHhHhheeeccc
Q 023063          182 YFVMGAAILVAVTVLVYIQDNIG  204 (288)
Q Consensus       182 ~~~~~~g~~i~~~~~~~l~~~~g  204 (288)
                      +...++|..++|.+.|++.+++|
T Consensus       328 ~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       328 QSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Confidence            88888999999999999988776

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.29  E-value=1.3e-10  Score=107.00  Aligned_cols=170  Identities=13%  Similarity=0.094  Sum_probs=122.2

Q ss_pred             hHHHHHHHHHHHHHhHHhhhhhHHHHhHHhc---CCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHH
Q 023063           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQL---HMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIY   99 (288)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~   99 (288)
                      .++......++....+.....+.+.|+.+.+   +.+....+.+.+...+...++.+..|++.||+ |||+.+.++.++.
T Consensus       216 ~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l~  294 (396)
T TIGR00882       216 KFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTIM  294 (396)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHH
Confidence            3444444444444444445556788887655   45666778888888888888999999999998 9999999988888


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHH
Q 023063          100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (288)
Q Consensus       100 ~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (288)
                      .++..+.....                      +.+.+++..++.+++..........+..+..+++      .++...+
T Consensus       295 ~l~~~~~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~at~~~  346 (396)
T TIGR00882       295 SVRIIGSSFAT----------------------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVR------LSATIYL  346 (396)
T ss_pred             HHHHHHHHhcC----------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc------eEEEeeh
Confidence            87776655433                      4555566677777776555455555666666665      4555555


Q ss_pred             H-HHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHH
Q 023063          180 W-YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSII  221 (288)
Q Consensus       180 ~-~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i  221 (288)
                      . ++....+|+.+++.+.|++.+..||+..|.+.+++.++..+
T Consensus       347 ~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~  389 (396)
T TIGR00882       347 IGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTL  389 (396)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            4 66788999999999999999989999999887776655544

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.28  E-value=3.4e-10  Score=103.92  Aligned_cols=175  Identities=15%  Similarity=0.043  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHH-HHhhhHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 023063           24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGG-TGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (288)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~  102 (288)
                      ++..+...++...+......+.+.|+.+ .|+++.+.+++...... ...++.+++|++.||+ |+|+.+..+..+..+.
T Consensus       210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~  287 (390)
T TIGR02718       210 AWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGSL  287 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence            4444455555656666666778888875 79999999998877654 5567788999999998 9999998877665333


Q ss_pred             HHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHH
Q 023063          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (288)
Q Consensus       103 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (288)
                      .+........+.                .......+...++.+++.+...+...+...+..++++     .+++.++..+
T Consensus       288 ~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~  346 (390)
T TIGR02718       288 ALLWFAQAAFWL----------------APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGD-----QAGTDVTAVQ  346 (390)
T ss_pred             HHHHHHHHHccc----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-----chHHHHHHHH
Confidence            332221110000                0122233333344556666666677777767666522     6899999999


Q ss_pred             HHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHH
Q 023063          183 FVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSII  221 (288)
Q Consensus       183 ~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i  221 (288)
                      ...++|..++|.++|++.+..|++..|.+.+++.+++.+
T Consensus       347 ~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       347 STRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            999999999999999999988998888877766555443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.28  E-value=7e-11  Score=109.78  Aligned_cols=162  Identities=16%  Similarity=0.097  Sum_probs=120.5

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i  101 (288)
                      |.++.+++..++...+++......+.|++..++ +..+.+.+..+..+...++.++.|+++||+ |||+++.++..+..+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~  299 (437)
T TIGR00792       222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVL  299 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            455556666666666666655555666665555 456667777777888899999999999998 999999999888877


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCCh-hhhhhhhhHHHH
Q 023063          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDP-KQATKTWKYFNW  180 (288)
Q Consensus       102 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  180 (288)
                      +.+...+..                     .+.+.+.+..++.+++.+...+...++++|..+.++- .+.+++|..++.
T Consensus       300 ~~~~~~~~~---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  358 (437)
T TIGR00792       300 GYLIFFFAG---------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSV  358 (437)
T ss_pred             HHHHHHHcc---------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHH
Confidence            776655422                     1345555666778899988888899999998764321 122357899999


Q ss_pred             HHHHHHHHHHHHHHhHhheeeccchh
Q 023063          181 YYFVMGAAILVAVTVLVYIQDNIGWG  206 (288)
Q Consensus       181 ~~~~~~~g~~i~~~~~~~l~~~~g~~  206 (288)
                      +++...+|..+++.+.+++.+..||.
T Consensus       359 ~~~~~~~g~~lg~~i~g~ll~~~G~~  384 (437)
T TIGR00792       359 RTFVRKLGQALAGFLVGLILGIIGYV  384 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999887766663

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.27  E-value=1.9e-11  Score=113.86  Aligned_cols=203  Identities=13%  Similarity=0.107  Sum_probs=136.5

Q ss_pred             HHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHH----hccchhH-HHHHHHHHHHHHHHHH
Q 023063           32 VCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVAD----AYAGRFW-TITIASIIYQIGMICL  106 (288)
Q Consensus        32 ~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD----r~~Grr~-~i~~~~~l~~i~~~~~  106 (288)
                      +..++.+.....+++.|+++.+|+++..++.+..+..+...+..|+.|.++|    |+ |||| .++++.++..++.+++
T Consensus        11 ~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~ll   89 (428)
T PF13347_consen   11 LGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFLL   89 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHHh
Confidence            4555566666678899999999999999999999999999999999999999    66 8766 4556777777777776


Q ss_pred             HHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHH
Q 023063          107 TISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMG  186 (288)
Q Consensus       107 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (288)
                      ....  |.            ..+.......+.+..++..++.........++.+|..++.+     +|.+..++......
T Consensus        90 f~~~--p~------------~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~-----~R~~l~~~~~~~~~  150 (428)
T PF13347_consen   90 FSPP--PA------------GLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD-----ERTRLSSWRMIFSM  150 (428)
T ss_pred             hccc--cc------------hhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHh-----hhhhHHHHHHHHHH
Confidence            6431  10            00111133344566666789999999999999999998765     79999999888888


Q ss_pred             HHHHHHHHhHhheeecc-------chhhhhhHhHHHHHHHHHHHHHhccceeecCCCCChhhHHHHHHHHHHHhC
Q 023063          187 AAILVAVTVLVYIQDNI-------GWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKR  254 (288)
Q Consensus       187 ~g~~i~~~~~~~l~~~~-------g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (288)
                      +|..+...+.+.+.+..       +|+....+.+++.++..++.....++.+++.+++++..+..+.++..+|||
T Consensus       151 ~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~~~~~~~~~~~~~nr  225 (428)
T PF13347_consen  151 IGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKKISLRDSLRSLFRNR  225 (428)
T ss_pred             HHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeeccccccccccccccccchhhhcccc
Confidence            88876666655443322       566666666555555444444443442222223333334444444445554

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.27  E-value=7.4e-10  Score=100.77  Aligned_cols=162  Identities=11%  Similarity=0.072  Sum_probs=114.4

Q ss_pred             hHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 023063           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (288)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~  102 (288)
                      ..+...+...+....++....+.|.|+++++|+++.+.+.+.....++..++.++.|++.||+ |||+.+..+..+..++
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~  285 (385)
T TIGR00710       207 MFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVS  285 (385)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence            344444444455556666777788899889999999999999999999999999999999998 9999998888777777


Q ss_pred             HHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHH
Q 023063          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (288)
Q Consensus       103 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (288)
                      .+++......                 .......+.....+.+++.+...+.......|..|+       ++++..+.++
T Consensus       286 ~~~~~~~~~~-----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~  341 (385)
T TIGR00710       286 AVLLEITAIL-----------------GLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFPH-------VAGTASALFG  341 (385)
T ss_pred             HHHHHHHHHh-----------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-------cchHHHHHHH
Confidence            6666543310                 001233444555677888888888888888888764       4888888877


Q ss_pred             HHHHHHHHHHHHhHhheeeccchhhhh
Q 023063          183 FVMGAAILVAVTVLVYIQDNIGWGWGL  209 (288)
Q Consensus       183 ~~~~~g~~i~~~~~~~l~~~~g~~~~f  209 (288)
                      .....++.+.+.+.+.+.+..++...+
T Consensus       342 ~~~~~~g~i~~~~~~~~~~~~~~~~~~  368 (385)
T TIGR00710       342 TLRLVLGAIVGYLVSLIHGNTAWPMSL  368 (385)
T ss_pred             HHHHHHHHHHHHHHHhccccChHHHHH
Confidence            766554444444455555554554433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00788 fbt folate/biopterin transporter

Probab=99.26  E-value=4.5e-10  Score=105.97  Aligned_cols=176  Identities=10%  Similarity=0.098  Sum_probs=126.7

Q ss_pred             hHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccc-----hhHHHHHHHH
Q 023063           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAG-----RFWTITIASI   97 (288)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~G-----rr~~i~~~~~   97 (288)
                      .+..+....+.+... +.....++.++++++|+++++.+...+...+...+- +++|.++||+ +     ||+.++++.+
T Consensus        27 ~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K-~l~g~l~D~~-~i~G~rRr~~l~~~~~  103 (468)
T TIGR00788        27 VLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALK-PFAGVMSDTF-PLFGYTKRWYLVLSGL  103 (468)
T ss_pred             HHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHhc-CCCCccchHHHHHHHH
Confidence            334444577778887 777778889999999999999988888888877775 5599999998 7     7777777765


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhH
Q 023063           98 IYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  177 (288)
Q Consensus        98 l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (288)
                      +.. ......+..                   .+.......+.+++.+++.+.......++..|..+ +++   +.++..
T Consensus       104 l~~-~~~~~~l~~-------------------~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~---~~~~~~  159 (468)
T TIGR00788       104 LGS-AILYGLLPG-------------------KVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESP---SAGPSL  159 (468)
T ss_pred             HHH-HHHHHhccc-------------------ccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCC---CcCCCe
Confidence            542 111122211                   01123333345678889999988999999999998 432   134556


Q ss_pred             HHHHHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHH
Q 023063          178 FNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (288)
Q Consensus       178 ~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~  225 (288)
                      .++.+...++|..+++.++|.+.+.++|+..|++.+++.++..+...+
T Consensus       160 ~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~  207 (468)
T TIGR00788       160 VSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNL  207 (468)
T ss_pred             eeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHh
Confidence            667777778999999999999999899999998887777666433333

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00895 2A0115 benzoate transport

Probab=99.26  E-value=2.1e-10  Score=104.34  Aligned_cols=147  Identities=14%  Similarity=0.058  Sum_probs=111.0

Q ss_pred             hHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 023063           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (288)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~  102 (288)
                      ..+.+....++....++....++| ++.+++|++..+.+.......++..++.++.|+++||+ |||+.+...... .+.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~-~~~  327 (398)
T TIGR00895       251 ITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLG-AVF  327 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHH-HHH
Confidence            334444555566667777777777 55667899999999999999999999999999999998 998554443333 333


Q ss_pred             HHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHH
Q 023063          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (288)
Q Consensus       103 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (288)
                      ..++....                     .+.+..++..++.+++.+...+...+++.|.+|++      .|++..++.+
T Consensus       328 ~~~~~~~~---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~  380 (398)
T TIGR00895       328 AVLVGSTL---------------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTA------IRATGVGWAI  380 (398)
T ss_pred             HHHHHHHh---------------------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHH------HHHHHHHHHH
Confidence            32222211                     03445556667888888888889999999999987      6999999999


Q ss_pred             HHHHHHHHHHHHhHhhe
Q 023063          183 FVMGAAILVAVTVLVYI  199 (288)
Q Consensus       183 ~~~~~g~~i~~~~~~~l  199 (288)
                      ....+|..++|.+.|++
T Consensus       381 ~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       381 GIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHhHHhc
Confidence            99999999999998865

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.26  E-value=2.7e-10  Score=107.33  Aligned_cols=153  Identities=13%  Similarity=0.097  Sum_probs=125.1

Q ss_pred             HhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccc
Q 023063           51 TQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEAN  130 (288)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  130 (288)
                      ++.++...+-+.+.+++.++..++.+.+|.|.||+ .-.+.+....++..+-.++.....                    
T Consensus        74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~~--------------------  132 (495)
T KOG2533|consen   74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAVH--------------------  132 (495)
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHh--------------------
Confidence            66778888999999999999999999999999998 866666666555555444444433                    


Q ss_pred             cchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhhe------eeccc
Q 023063          131 KGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYI------QDNIG  204 (288)
Q Consensus       131 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l------~~~~g  204 (288)
                        +.+.+.+.|++.|+..++.+|....+++.++.++      +|+..+++++...++|+.+|..+...+      ....|
T Consensus       133 --s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~------e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~g  204 (495)
T KOG2533|consen  133 --SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKS------ERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAG  204 (495)
T ss_pred             --hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChh------hhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCC
Confidence              6788899999999999999999999999999998      699999999999999999999888764      23568


Q ss_pred             hhhhhhHhHHHHHHHHHHHHHhccceee
Q 023063          205 WGWGLGIPTFAMFLSIIAFLIGYPLYRN  232 (288)
Q Consensus       205 ~~~~f~~~~~~~~~~~i~~~~~~~~~~~  232 (288)
                      ||+.|++.+++.+...++.++..|..+.
T Consensus       205 W~~~FiI~G~i~~~~gi~~f~~lp~~P~  232 (495)
T KOG2533|consen  205 WRWLFIIEGVITLVLGIVVFFFLPDNPS  232 (495)
T ss_pred             ceeehhHHHHHHHHHHheEEEEecCChh
Confidence            9999999998777766665555554443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.25  E-value=1.2e-09  Score=100.84  Aligned_cols=165  Identities=11%  Similarity=0.013  Sum_probs=115.5

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i  101 (288)
                      +.++..+...++.....++...+++.++.+++|++..+.+.......++..++.++.|++.||. +|+..+. +..+..+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~~l~~-~~~~~~~  293 (394)
T PRK10213        216 PGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKLALAG-APLVLAV  293 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHH-HHHHHHH
Confidence            3445444444555555556556664444467899999999988888889999999999999996 5544344 3333333


Q ss_pred             H-HHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 023063          102 G-MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (288)
Q Consensus       102 ~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (288)
                      . .++.....                      +.+.+.+..++.|++.+...+...+++.+..|++       .++..+.
T Consensus       294 ~~~~l~~~~~----------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~  344 (394)
T PRK10213        294 SALVLTLWGS----------------------DKIVATGVAIIWGLTFALVPVGWSTWITRSLADQ-------AEKAGSI  344 (394)
T ss_pred             HHHHHHHHhh----------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCccc-------HHHHHHH
Confidence            3 33322222                      3455666777889999988888888888888743       5555666


Q ss_pred             HHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHH
Q 023063          181 YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMF  217 (288)
Q Consensus       181 ~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~  217 (288)
                      .....++|..+|+.++|++.+..|++..+...+++.+
T Consensus       345 ~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~  381 (394)
T PRK10213        345 QVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLML  381 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHH
Confidence            6677789999999999999998888877777665443

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.24  E-value=8.7e-11  Score=104.78  Aligned_cols=117  Identities=14%  Similarity=0.124  Sum_probs=103.2

Q ss_pred             CCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchH
Q 023063           55 MPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQV  134 (288)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  134 (288)
                      .+..-+|.+-+.+.+...+++++.|.++||+ |||+++++|.+...+...+.+.+.                      +.
T Consensus        65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S~----------------------~F  121 (451)
T KOG2615|consen   65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALSR----------------------NF  121 (451)
T ss_pred             ccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHHH----------------------HH
Confidence            3455678889999999999999999999999 999999999999888777777766                      67


Q ss_pred             HHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhheee
Q 023063          135 AILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQD  201 (288)
Q Consensus       135 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~  201 (288)
                      ..+.++|++.|+..|-. +.+.++++|..+++      .|+..++.+..+..+|..+||.+++++.+
T Consensus       122 ~afv~aR~l~Gi~kgnl-~v~rAiisdV~sek------~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  122 AAFVLARFLGGIFKGNL-SVIRAIISDVVSEK------YRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHHHHHHHhhhhccCch-HHHHHHHHhhcChh------hccceeeeeehhhhcchhhcchhhhHHHh
Confidence            77788899999887754 56789999999987      69999999999999999999999999887

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.24  E-value=1.5e-09  Score=102.12  Aligned_cols=157  Identities=13%  Similarity=0.036  Sum_probs=107.8

Q ss_pred             hHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCc
Q 023063           44 NMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGE  123 (288)
Q Consensus        44 ~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~  123 (288)
                      +.|.++ ++.|++.....+......+...++.+++|+++||+ |||+.++.+.++..++.+.+..... +          
T Consensus       293 ~~p~i~-~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~-~----------  359 (479)
T PRK10077        293 YAPEIF-KTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFY-T----------  359 (479)
T ss_pred             HHHHHH-HHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHh-c----------
Confidence            334443 56788877777777777778889999999999998 9999999999988888877764330 0          


Q ss_pred             ccccccccchHHHHHHHHHHHHHhccC-cchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHh-----
Q 023063          124 QVCQEANKGQVAILYVSLLLAALGSGG-IRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLV-----  197 (288)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~l~g~g~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~-----  197 (288)
                             +..........++.+++.+. ..+...++++|.+|++      .|+.++++.+....+|..+++.+.+     
T Consensus       360 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~------~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~  426 (479)
T PRK10077        360 -------QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNA------IRGKALAIAVAAQWIANYFVSWTFPMMDKN  426 (479)
T ss_pred             -------CcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChh------HHHHHHHHHHHHHHHHHHHHHHHhHHHHhc
Confidence                   00111222333344444433 2366788999999987      6999999998888888888765554     


Q ss_pred             -heeeccchhhhhhHhHHHHHHHHHHHHHh
Q 023063          198 -YIQDNIGWGWGLGIPTFAMFLSIIAFLIG  226 (288)
Q Consensus       198 -~l~~~~g~~~~f~~~~~~~~~~~i~~~~~  226 (288)
                       ++.+.++|+..|++.++..+++.+..+..
T Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  456 (479)
T PRK10077        427 SWLVAHFHNGFSYWIYGCMGVLAALFMWKF  456 (479)
T ss_pred             cchhhhccCccHHHHHHHHHHHHHHHHHhc
Confidence             44456788877877666555555444433

>PRK10133 L-fucose transporter; Provisional

Probab=99.24  E-value=4.3e-10  Score=105.23  Aligned_cols=165  Identities=13%  Similarity=0.088  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHHHHhHHhhhhhHHHHh-HHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 023063           24 MPFIFSNEVCEKLAVVGFNTNMISYL-TTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (288)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~l~~yl-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~  102 (288)
                      ++...+..++.....++...+++.|+ ++.+|+++.+++.....+.++..++.+++|++.||+ |||+++..+..+..++
T Consensus       260 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~  338 (438)
T PRK10133        260 WRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMAL  338 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHH
Confidence            33344444555566666667888886 567899999999999999999999999999999998 9999998887766655


Q ss_pred             HHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHH
Q 023063          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (288)
Q Consensus       103 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (288)
                      .++..+..                      +. .......+.|++.+.+.|+..+...|.++++       .+.+.+...
T Consensus       339 ~~~~~~~~----------------------~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-------~~~as~l~~  388 (438)
T PRK10133        339 CLISAFAG----------------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSFIV  388 (438)
T ss_pred             HHHHHHcC----------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcccchh-------hccchhHHh
Confidence            54443322                      11 1234567789999999999999999988764       333333333


Q ss_pred             HHHHHHHHHHHHhHhheeeccc-hhhhhhHhHHHHHHHH
Q 023063          183 FVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLSI  220 (288)
Q Consensus       183 ~~~~~g~~i~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~  220 (288)
                       ...+|+.++|.+.|.+.+..| -+..|.++.++.+...
T Consensus       389 -~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~  426 (438)
T PRK10133        389 -MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF  426 (438)
T ss_pred             -HHhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence             234678888889999888887 6777776655544433

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.24  E-value=6.9e-10  Score=101.91  Aligned_cols=179  Identities=11%  Similarity=-0.055  Sum_probs=119.9

Q ss_pred             HHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHH--HHHHHHHHhhhHHHH-HHHHHhccchhHHHHHHHHHHH
Q 023063           24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANT--LTNFGGTGSLTPLIG-AFVADAYAGRFWTITIASIIYQ  100 (288)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~-G~laDr~~Grr~~i~~~~~l~~  100 (288)
                      ...+....+.+...+....+.+|.|+++ .|.+..+.+..  .........+..|+. ++.+||+ ||||..++.+.+..
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~-~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~   80 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLRE-DGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLV   80 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHH
Confidence            4455667777888877777889999875 69999999996  355677777777776 6679997 99998766653322


Q ss_pred             H-HHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHH
Q 023063          101 I-GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (288)
Q Consensus       101 i-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (288)
                      . ....+....  +.                ......+.....+.++..+...+...++..|..+++      +++...+
T Consensus        81 ~~~~~~~~~~~--~~----------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~------~~~~~~~  136 (390)
T TIGR02718        81 SACLASLALVG--PD----------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNGR------TLAKGNA  136 (390)
T ss_pred             HHHHHHHHcCC--cc----------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHh------hhhHHHH
Confidence            2 222222111  10                011222233334445555566666666777766655      4677777


Q ss_pred             HHHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHHhcc
Q 023063          180 WYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYP  228 (288)
Q Consensus       180 ~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~~~  228 (288)
                      ...++..+|..+++...+++.+.+||+..|++.+++.++..+..+...+
T Consensus       137 ~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~  185 (390)
T TIGR02718       137 VQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKD  185 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            7778888999999988888889999999999888877665555444433

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK11462 putative transporter; Provisional

Probab=99.22  E-value=6.2e-10  Score=104.80  Aligned_cols=149  Identities=11%  Similarity=0.174  Sum_probs=112.4

Q ss_pred             HHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhc---cchhHH-HHHHHHHHHHHHH
Q 023063           29 SNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAY---AGRFWT-ITIASIIYQIGMI  104 (288)
Q Consensus        29 ~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~---~Grr~~-i~~~~~l~~i~~~  104 (288)
                      ...+..+..+..+..++..|+++..|+++..++.+..+.-+.-.+.-|+.|+++||.   +||||. ++++.+.+.++.+
T Consensus        16 ~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~   95 (460)
T PRK11462         16 MGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCV   95 (460)
T ss_pred             cchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHH
Confidence            344555666666678899999999999999999999999999999999999999973   488754 4556677777766


Q ss_pred             HHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHH
Q 023063          105 CLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV  184 (288)
Q Consensus       105 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (288)
                      +++..   |...             .+.....+.+..++..++..+......++.+|+.++.+     +|++..++...+
T Consensus        96 llf~~---p~~s-------------~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~-----eRt~l~s~r~~~  154 (460)
T PRK11462         96 LAYST---PDLS-------------MNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPT-----QRISLQSWRFVL  154 (460)
T ss_pred             HHHhC---CCCC-------------cchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHH-----HHHHHHHHHHHH
Confidence            65532   2110             12223444555566788888888889999999987654     899999999999


Q ss_pred             HHHHHHHHHHhHhh
Q 023063          185 MGAAILVAVTVLVY  198 (288)
Q Consensus       185 ~~~g~~i~~~~~~~  198 (288)
                      .++|+.+++.+...
T Consensus       155 ~~iG~~~~~~~~~p  168 (460)
T PRK11462        155 ATAGGMLSTVLMMP  168 (460)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99988887766543

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.22  E-value=1.5e-09  Score=100.21  Aligned_cols=155  Identities=10%  Similarity=0.171  Sum_probs=103.0

Q ss_pred             hhHHHHhHHhcCCCHHHHHHHHHHHH-HHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 023063           43 TNMISYLTTQLHMPLTKAANTLTNFG-GTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCE  121 (288)
Q Consensus        43 ~~l~~yl~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~  121 (288)
                      .+.+.|+.+++|+++.+.+++..... +...++.+++|++.||+ |||+.+..+..+..+..+........+        
T Consensus       230 ~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~~l~~~~~~~~~--------  300 (402)
T PRK11902        230 SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVSNLGYWVLAVTP--------  300 (402)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhcC--------
Confidence            34455777788999999998876554 45788899999999998 999988777766555544433222111        


Q ss_pred             CcccccccccchHHHHHHHH----HHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHh
Q 023063          122 GEQVCQEANKGQVAILYVSL----LLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLV  197 (288)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~----~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~  197 (288)
                                .+.+.+.+..    +..+++.+...+....++.+.+|.+      .+    +.+....++|..+++.++|
T Consensus       301 ----------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~l~~~~~~~~~G  360 (402)
T PRK11902        301 ----------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSAT------QY----ALLSALASVGRVYVGPTSG  360 (402)
T ss_pred             ----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH------HH----HHHHHHHHHHHHHHHHHHH
Confidence                      1333344333    2345556666666677777777654      23    3344445667766667889


Q ss_pred             heeeccchhhhhhHhHHHHHHHHHHHHHh
Q 023063          198 YIQDNIGWGWGLGIPTFAMFLSIIAFLIG  226 (288)
Q Consensus       198 ~l~~~~g~~~~f~~~~~~~~~~~i~~~~~  226 (288)
                      .+.+..||+..|.+.+++.+++.+..+..
T Consensus       361 ~l~~~~G~~~~f~~~~~~~~~~~~~~~~~  389 (402)
T PRK11902        361 YLVEAYGWPGFYLMTVVIALPGLALLWLM  389 (402)
T ss_pred             HHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998888887776766555443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.22  E-value=3.6e-10  Score=107.44  Aligned_cols=166  Identities=17%  Similarity=0.110  Sum_probs=105.9

Q ss_pred             HHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHH------------HHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHH
Q 023063           30 NEVCEKLAVVGFNTNMISYLTTQLHMPLTKAAN------------TLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASI   97 (288)
Q Consensus        30 ~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~------------~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~   97 (288)
                      ..++..+.+|+...+.|.+++ +.|++..+++.            ...+..++..++.++.++++||+ |||+.++++..
T Consensus       296 ~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l~~~~~  373 (502)
T TIGR00887       296 SWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQLMGFF  373 (502)
T ss_pred             HHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHHH
Confidence            344456678888888888885 56775432211            12233345556778899999998 99999988887


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhH
Q 023063           98 IYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  177 (288)
Q Consensus        98 l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (288)
                      +..++.+++..... +                .+ ....+....+...++..+..+....+.+|.+|++      .|+++
T Consensus       374 ~~~~~~~~l~~~~~-~----------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~------~R~~~  429 (502)
T TIGR00887       374 ILTVLFFVLGFAYN-H----------------LS-THGFLAIYVLAQFFANFGPNATTFIVPGEVFPTR------YRSTA  429 (502)
T ss_pred             HHHHHHHHHHHHHH-h----------------cc-hhHHHHHHHHHHHHHhcCCCchhhhhhhccCchh------HHHHH
Confidence            77776655554320 0                00 1111111111122222233456677889999998      69999


Q ss_pred             HHHHHHHHHHHHHHHHHhHhheeec----------cchhhhhhHhHHHHHHHHH
Q 023063          178 FNWYYFVMGAAILVAVTVLVYIQDN----------IGWGWGLGIPTFAMFLSII  221 (288)
Q Consensus       178 ~~~~~~~~~~g~~i~~~~~~~l~~~----------~g~~~~f~~~~~~~~~~~i  221 (288)
                      .++.+....+|++++|.+.+++.+.          .++...|++.++..+++.+
T Consensus       430 ~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i  483 (502)
T TIGR00887       430 HGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGIL  483 (502)
T ss_pred             HHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHH
Confidence            9999999999999999999988763          3344456655555544443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK09848 glucuronide transporter; Provisional

Probab=99.21  E-value=8e-10  Score=103.47  Aligned_cols=150  Identities=12%  Similarity=0.059  Sum_probs=99.1

Q ss_pred             HHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhc---cchhHHH-HHHHHHHHHHHH
Q 023063           29 SNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAY---AGRFWTI-TIASIIYQIGMI  104 (288)
Q Consensus        29 ~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~---~Grr~~i-~~~~~l~~i~~~  104 (288)
                      ...+..+..+....++++.|+++.+|+++.+++.+..+..+...+..++.|+++||.   +||||.. ..+.+...+..+
T Consensus        15 ~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~   94 (448)
T PRK09848         15 LGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSV   94 (448)
T ss_pred             cchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHH
Confidence            345556666666677888999999999999999999999999999999999999985   3667644 555554444444


Q ss_pred             HHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHH
Q 023063          105 CLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV  184 (288)
Q Consensus       105 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (288)
                      ++...   |...            +.....+..++...+.+++.+...+...++..++..+.+     +|.+..++..++
T Consensus        95 ~~~~~---~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-----~r~~~~~~r~~~  154 (448)
T PRK09848         95 LVFWV---PTDW------------SHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQ-----SRARLGAARGIA  154 (448)
T ss_pred             HHHhC---cCCC------------CcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHH-----HHHHHHHHHHHH
Confidence            33211   1000            011123334445566788888888777787777766543     577766655443


Q ss_pred             -----HHHHHHHHHHhHhh
Q 023063          185 -----MGAAILVAVTVLVY  198 (288)
Q Consensus       185 -----~~~g~~i~~~~~~~  198 (288)
                           ..++..++|.+.+.
T Consensus       155 ~~~~~~~~~~~~~p~i~~~  173 (448)
T PRK09848        155 ASLTFVCLAFLIGPSIKNS  173 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence                 33555566666554

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.21  E-value=2.6e-10  Score=103.23  Aligned_cols=175  Identities=14%  Similarity=0.145  Sum_probs=142.9

Q ss_pred             hHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 023063           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (288)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~  102 (288)
                      .+..-+++.++.+=+..++.+....|...++|++..+..++....++.+.++++++|+|.||+ |.|+++..+++++.+.
T Consensus       253 ~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~~  331 (438)
T COG2270         253 NLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSIA  331 (438)
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHHH
Confidence            555555677777777777788888999999999999999999999999999999999999998 9999999999888877


Q ss_pred             HHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHH
Q 023063          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (288)
Q Consensus       103 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (288)
                      .+......                      ....+++.-++.|...|...+..-++.++..|++      +-+++++.|+
T Consensus       332 ~~~~~~~~----------------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~------k~~~fFglya  383 (438)
T COG2270         332 ALYLIFLE----------------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPKG------KEGRFFGLYA  383 (438)
T ss_pred             HHHHHHcc----------------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCc------cccceeehhh
Confidence            76665544                      2334555556889999999999999999999998      6899999999


Q ss_pred             HHHHHHHHHHHHhHhheeeccc-hhhhhhHhHHHHHHHHHHHHHh
Q 023063          183 FVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLSIIAFLIG  226 (288)
Q Consensus       183 ~~~~~g~~i~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~i~~~~~  226 (288)
                      +.....+.++|...+.+.+.+| -|..+....++..+++++++..
T Consensus       384 ltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v  428 (438)
T COG2270         384 LTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRV  428 (438)
T ss_pred             hhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEee
Confidence            9999999999999998877666 4666666655555555554443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.21  E-value=1.8e-13  Score=127.90  Aligned_cols=138  Identities=18%  Similarity=0.230  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHH
Q 023063           58 TKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAIL  137 (288)
Q Consensus        58 ~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  137 (288)
                      .+.++..+...++..++.+++|+++||+ |||++++++..+..++.++..++.                   ...+.+.+
T Consensus        46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~-------------------~~~~~~~~  105 (451)
T PF00083_consen   46 LLSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAP-------------------SYNNFWML  105 (451)
T ss_pred             HHHHHHHHHHHhhhcccccccccccccc-cccccccccccccccccccccccc-------------------cccccccc
Confidence            3567888999999999999999999998 999999999999999998888755                   11256778


Q ss_pred             HHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhheeec---cchhhhhhHhHH
Q 023063          138 YVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN---IGWGWGLGIPTF  214 (288)
Q Consensus       138 ~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~---~g~~~~f~~~~~  214 (288)
                      .++|++.|++.|+..+..+.++.|..|++      .|+......+....+|..++..+...+.+.   .+||..+.+..+
T Consensus       106 ~~~R~~~G~~~g~~~~~~~~~~~E~~~~~------~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~  179 (451)
T PF00083_consen  106 LIGRFLIGFGIGGAYVVSPIYISEIAPPK------HRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAI  179 (451)
T ss_pred             ccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccccccccc
Confidence            89999999999999999999999999988      689999999998889988888766544332   359988877766


Q ss_pred             HHHHHHH
Q 023063          215 AMFLSII  221 (288)
Q Consensus       215 ~~~~~~i  221 (288)
                      ..++.++
T Consensus       180 ~~l~~~~  186 (451)
T PF00083_consen  180 PSLLVLL  186 (451)
T ss_pred             ccccccc
Confidence            6544433

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK09848 glucuronide transporter; Provisional

Probab=99.20  E-value=6e-10  Score=104.35  Aligned_cols=163  Identities=12%  Similarity=0.120  Sum_probs=120.8

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i  101 (288)
                      |.+....+..++...+++......+.|+++.+|.++...++......+...++.++.++++||+ |+|+++.++.++..+
T Consensus       228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i  306 (448)
T PRK09848        228 RPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTC  306 (448)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            4455555566666666666666677788888888776665554444566778899999999998 999999999988888


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCCh-hhhhhhhhHHHH
Q 023063          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDP-KQATKTWKYFNW  180 (288)
Q Consensus       102 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  180 (288)
                      +.+.+.+..                    ..+.+.+.+..++.++|.+...+...++.+|..+.++- .+.++.|..++.
T Consensus       307 ~~~~~~~~~--------------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~  366 (448)
T PRK09848        307 GYLLFFWVS--------------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSL  366 (448)
T ss_pred             HHHHHHHcC--------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHH
Confidence            877665422                    11455566667788999999999999999998876532 123356888899


Q ss_pred             HHHHHHHHHHHHHHhHhheeeccch
Q 023063          181 YYFVMGAAILVAVTVLVYIQDNIGW  205 (288)
Q Consensus       181 ~~~~~~~g~~i~~~~~~~l~~~~g~  205 (288)
                      +++...+|..+++.+.+.+.+..||
T Consensus       367 ~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        367 FSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999988876555454

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.20  E-value=1.5e-09  Score=103.35  Aligned_cols=169  Identities=15%  Similarity=0.135  Sum_probs=136.9

Q ss_pred             HHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Q 023063           27 IFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICL  106 (288)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~  106 (288)
                      ++...++.++....+...+|.+.++.+|.++...|++.+...++..++.++.+++.+|+ ++++.+..+.+++.++.+.+
T Consensus       223 ~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~~~~l  301 (524)
T PF05977_consen  223 VLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALALLLL  301 (524)
T ss_pred             HHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHHHHHH
Confidence            33334444444444556688888899999999999999999999999999999999997 99999888888888877777


Q ss_pred             HHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHH
Q 023063          107 TISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMG  186 (288)
Q Consensus       107 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (288)
                      .+..                      +.+...+..++.|++.........+.+-+..|++      .||+.++.+.....
T Consensus       302 al~~----------------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~------~~GRv~si~~~~~~  353 (524)
T PF05977_consen  302 ALSP----------------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDW------VRGRVFSIYQMVFF  353 (524)
T ss_pred             hcch----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH------HHhHHHHHHHHHHH
Confidence            7655                      6677777778888888888778888888888887      79999999999999


Q ss_pred             HHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHH
Q 023063          187 AAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFL  224 (288)
Q Consensus       187 ~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~  224 (288)
                      .+..+|..+.|.+.+.+|-+..+.+.++..+++.++..
T Consensus       354 g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  354 GGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988888777766555554433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.20  E-value=6.4e-10  Score=115.42  Aligned_cols=163  Identities=10%  Similarity=0.027  Sum_probs=124.8

Q ss_pred             hHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHH-HHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 023063           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLT-KAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (288)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i  101 (288)
                      .++..++..++.....+.+..+++.|+.+.+|++.. +.+++.+...++..++.+++|+++||+ ++++.+.++.++..+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~  311 (1146)
T PRK08633        233 VLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLAL  311 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHHH
Confidence            344444444555555566677889999999999998 999999999999999999999999998 999988888777777


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 023063          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (288)
Q Consensus       102 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (288)
                      +.+++....                      +.+.+++..++.|++.++..+...+++.+..|++      .|++++++.
T Consensus       312 ~~~~~~~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~------~rg~~~~~~  363 (1146)
T PRK08633        312 SLFLLPTAP----------------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEK------ELGKVLAAN  363 (1146)
T ss_pred             HHHHHHHhh----------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCcc------chhhhhHHH
Confidence            766665543                      4556667777888998888888889999999887      699999999


Q ss_pred             HHHHHHHHHHHHHhHhheee-ccchhhhhhHhHH
Q 023063          182 YFVMGAAILVAVTVLVYIQD-NIGWGWGLGIPTF  214 (288)
Q Consensus       182 ~~~~~~g~~i~~~~~~~l~~-~~g~~~~f~~~~~  214 (288)
                      ++..++|..+++.+++.+.. .+++...|.+.+.
T Consensus       364 ~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~  397 (1146)
T PRK08633        364 NFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIAL  397 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            99999999888777665533 2334444444333

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.19  E-value=6.3e-10  Score=105.06  Aligned_cols=165  Identities=14%  Similarity=0.075  Sum_probs=117.0

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i  101 (288)
                      |.+..+++..++...+.+......+.|.+...+ +....+.+.....+...++.++.++++||+ |+|+++.++..+..+
T Consensus       231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~  308 (473)
T PRK10429        231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVL  308 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence            556666666676777666666666655554444 455566666666678888899999999998 999999988877776


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCC-hhhhhhhhhHHHH
Q 023063          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETD-PKQATKTWKYFNW  180 (288)
Q Consensus       102 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  180 (288)
                      +.+........                 .+.+.+.+.+..++.+++.+...+...++++|..+.++ +.++++.|..++.
T Consensus       309 ~~~~~~~~~~~-----------------~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~  371 (473)
T PRK10429        309 SCGVLLLMGLA-----------------APHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSV  371 (473)
T ss_pred             HHHHHHHHhcc-----------------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHH
Confidence            66555432100                 11245556666677888999888899999999977542 2233356778899


Q ss_pred             HHHHHHHHHHHHHHhHhheeeccch
Q 023063          181 YYFVMGAAILVAVTVLVYIQDNIGW  205 (288)
Q Consensus       181 ~~~~~~~g~~i~~~~~~~l~~~~g~  205 (288)
                      ..+...+|..+++.+.|++.+..||
T Consensus       372 ~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        372 QTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999998887665555

>PRK10054 putative transporter; Provisional

Probab=99.18  E-value=6e-10  Score=102.78  Aligned_cols=169  Identities=11%  Similarity=-0.010  Sum_probs=120.6

Q ss_pred             hHHHHHHHHHHHHHhHHhhhhhHHHHhHH--hcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHH
Q 023063           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTT--QLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ  100 (288)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~  100 (288)
                      ..+......++..+.+.....+.+.|+..  +.+.+....+.+.....+......++.|++.||+ |+|+.+..+..+..
T Consensus       207 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~~  285 (395)
T PRK10054        207 ALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCFV  285 (395)
T ss_pred             eehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHHH
Confidence            34444445555555555555666777753  3445566667777777666677778889999998 99999998888887


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 023063          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (288)
Q Consensus       101 i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (288)
                      ++.+......                     .+.+.+.+..++.++|.+...+...+++.+..|++      .++++++.
T Consensus       286 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~------~~~~~~~~  338 (395)
T PRK10054        286 IGLVGFIFSG---------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPG------MKASYFSA  338 (395)
T ss_pred             HHHHHHHHcc---------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcc------cceehHhH
Confidence            7776665432                     14455566677888888877778888888988876      57888776


Q ss_pred             HHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHH
Q 023063          181 YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSI  220 (288)
Q Consensus       181 ~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~  220 (288)
                      .+ ...+|..++|.++|.+.++.|.+..|.+.++...++.
T Consensus       339 ~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~  377 (395)
T PRK10054        339 QS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAW  377 (395)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHH
Confidence            54 5668999999999999999988877766555444443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.18  E-value=9.4e-10  Score=102.45  Aligned_cols=162  Identities=16%  Similarity=0.149  Sum_probs=131.6

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i  101 (288)
                      |.+..+++..++...++.......+.|.+..+|.+ ...+.+..+..+...++.++.++++||+ |+|+++..+.++..+
T Consensus       225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~  302 (428)
T PF13347_consen  225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAAL  302 (428)
T ss_pred             chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHH
Confidence            55666667777777777777778888888888877 4566677788889999999999999998 999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCCh-hhhhhhhhHHHH
Q 023063          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDP-KQATKTWKYFNW  180 (288)
Q Consensus       102 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  180 (288)
                      +.++..+..                    ..+.+.+++..++.|++.+.......++++|..+.++- .++++.|..++.
T Consensus       303 ~~~~~~~~~--------------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~  362 (428)
T PF13347_consen  303 GFLLLFFLG--------------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSV  362 (428)
T ss_pred             HHHHHHHHH--------------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHh
Confidence            988877654                    12677788888999999999999999999999986542 233457888899


Q ss_pred             HHHHHHHHHHHHHHhHhheeeccch
Q 023063          181 YYFVMGAAILVAVTVLVYIQDNIGW  205 (288)
Q Consensus       181 ~~~~~~~g~~i~~~~~~~l~~~~g~  205 (288)
                      +.....+|..+++.+.+.+.+..|+
T Consensus       363 ~~~~~k~~~~la~~i~g~~l~~~Gy  387 (428)
T PF13347_consen  363 NSFFIKIGQGLAGAIVGLLLALVGY  387 (428)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHhCc
Confidence            9999999999999988877555554

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.16  E-value=1.5e-09  Score=100.26  Aligned_cols=152  Identities=8%  Similarity=-0.060  Sum_probs=105.0

Q ss_pred             hhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 023063           40 GFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPP  119 (288)
Q Consensus        40 ~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~  119 (288)
                      ....++|.|+++..+ ++.+.+++.....+.........+++.||.++.++.+..+.++..++.+++....         
T Consensus       226 ~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~---------  295 (400)
T PRK11646        226 QVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS---------  295 (400)
T ss_pred             HHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh---------
Confidence            344567888876655 6677777776666655544444455555543767777777777777766655443         


Q ss_pred             CCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhhe
Q 023063          120 CEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYI  199 (288)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l  199 (288)
                                   +.+.+.+...+.++|.+...+...+++.|..|++      ++++.++.++...++|..++|.+.|++
T Consensus       296 -------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~------~~g~~~g~~~~~~~~g~~ig~~l~G~l  356 (400)
T PRK11646        296 -------------NLQQLFTLICLFYIGSIIAEPARETLSASLADAR------ARGSYMGFSRLGLALGGAIGYIGGGWL  356 (400)
T ss_pred             -------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcc------cchhhhhHHHHHHHHHHHhcccchHHH
Confidence                         3444555556677777777788888999999987      699999999999999999999999998


Q ss_pred             eeccc----hhhhhhHhHHHHHHHH
Q 023063          200 QDNIG----WGWGLGIPTFAMFLSI  220 (288)
Q Consensus       200 ~~~~g----~~~~f~~~~~~~~~~~  220 (288)
                      .++.+    ....|.+..++.++..
T Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~  381 (400)
T PRK11646        357 FDLGKALNQPELPWMMLGIIGLITL  381 (400)
T ss_pred             HHHHhhcCCcchHHHHHHHHHHHHH
Confidence            77642    2344444444443443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.16  E-value=8.6e-10  Score=114.58  Aligned_cols=182  Identities=9%  Similarity=-0.025  Sum_probs=127.6

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i  101 (288)
                      +.++..++..++..+.++.+.+++|.|+++.+|.++.+.+++.+...++..++.++.|+++|++ ++++.+..+.++..+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~  303 (1140)
T PRK06814        225 KRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGL  303 (1140)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHH
Confidence            4555666666666677777788999999999999999999999999999999999999999987 666665555555544


Q ss_pred             HHHHHHHHh-h-cCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHH
Q 023063          102 GMICLTISA-I-LPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (288)
Q Consensus       102 ~~~~~~~~~-~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (288)
                      +.+.+.+.. . .+..... +  ...+.. ...+.+.++++.++.|++.+...+...+++.+.+|++      .+|++++
T Consensus       304 ~~~~l~~~~~~~~~~~~~~-~--~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~------~~G~v~g  373 (1140)
T PRK06814        304 FGLDLAFASSSVPAEPAQL-K--SILVFL-SKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPA------HRARVIA  373 (1140)
T ss_pred             HHHHHHhcccccccccccc-c--chhhhh-cccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcc------cceeeeH
Confidence            444333320 0 0000000 0  000000 0013455667777889999998888999999999988      6999999


Q ss_pred             HHHHHHHHHHHHHHHhHhheee-ccchhhhhhHhHH
Q 023063          180 WYYFVMGAAILVAVTVLVYIQD-NIGWGWGLGIPTF  214 (288)
Q Consensus       180 ~~~~~~~~g~~i~~~~~~~l~~-~~g~~~~f~~~~~  214 (288)
                      ..+....+|..+++++.+.+.. ..++...+.+.++
T Consensus       374 ~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~  409 (1140)
T PRK06814        374 ANNVLNAAFMVAGTIILALLQALGFSIPWIILFIAL  409 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            9999999999999999887753 3455555544443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.15  E-value=2.8e-09  Score=97.50  Aligned_cols=166  Identities=10%  Similarity=-0.059  Sum_probs=109.6

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchh---HHHHH-HHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRF---WTITI-ASI   97 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr---~~i~~-~~~   97 (288)
                      +.+|.+....++....+|++..|+|.|+++ .|++.. .+....+..+.+.++   .++++||. .||   +.... ...
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~-~r~~~r~~~~~~~~~  265 (368)
T TIGR00903       192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGLIG---VAVIPDRV-ARAGLRSIYIRAAAL  265 (368)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHHHH---HHHhhHHh-hhhhhHHHHHHHHHH
Confidence            567777788888999999999999999965 678764 555555554444444   57888886 543   33222 232


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhH
Q 023063           98 IYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  177 (288)
Q Consensus        98 l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (288)
                      +..+.........                      +.....+...+.+++.....+...++.+|.+|++      .|+++
T Consensus       266 ~~a~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~------~rgt~  317 (368)
T TIGR00903       266 LIAAFFLALAFEL----------------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKE------LHGKA  317 (368)
T ss_pred             HHHHHHHHHHHcc----------------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchh------hcCcc
Confidence            2222222222211                      1222233344556666666677889999999998      69999


Q ss_pred             HHHHHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHH
Q 023063          178 FNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAF  223 (288)
Q Consensus       178 ~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~  223 (288)
                      .++.+...++|+.++|.+.+.+..  |....|.+.++..+++.+..
T Consensus       318 ~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~  361 (368)
T TIGR00903       318 AGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA  361 (368)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988886653  55566666665555555443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.14  E-value=4.9e-09  Score=96.65  Aligned_cols=159  Identities=11%  Similarity=0.028  Sum_probs=114.5

Q ss_pred             HhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 023063           36 LAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQL  115 (288)
Q Consensus        36 ~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~  115 (288)
                      .........++.|+++.+|.++.+.+.+.....++..++.++.+++.||+ ++++.+..+..+ .+..+.+....     
T Consensus       219 ~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~~-~~~~~~~~~~~-----  291 (393)
T PRK11195        219 GAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGILM-GLVVLLMALQH-----  291 (393)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHHH-HHHHHHHHHHh-----
Confidence            33444445567788888999999999999999999999999999999998 988888777533 33322222222     


Q ss_pred             CCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHh
Q 023063          116 RPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTV  195 (288)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~  195 (288)
                                       +.+...+..++.|++.+...+...+.+.+..|++.     .+|+.++..+...++|..++..+
T Consensus       292 -----------------~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-----~~g~~~a~~~~~~~~~~~~~~~~  349 (393)
T PRK11195        292 -----------------SLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-----GAGHSIAVQNFNENLAMLLMLGL  349 (393)
T ss_pred             -----------------HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-----cchhHHHHHhHHHHHHHHHHHHH
Confidence                             34445556667888888888777777777644431     27999999999999999999988


Q ss_pred             HhheeeccchhhhhhHhHHHHHHHHHHHH
Q 023063          196 LVYIQDNIGWGWGLGIPTFAMFLSIIAFL  224 (288)
Q Consensus       196 ~~~l~~~~g~~~~f~~~~~~~~~~~i~~~  224 (288)
                      .+.+ +.+|-+..+.+..+..++.+...+
T Consensus       350 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  377 (393)
T PRK11195        350 YSLL-VKLGVPVVAVIVGFGLLVALAMAL  377 (393)
T ss_pred             HHHH-HHcCCCHHHHHHHHHHHHHHHHHH
Confidence            8855 566767666666555555444333

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.13  E-value=2.3e-10  Score=104.32  Aligned_cols=121  Identities=18%  Similarity=0.132  Sum_probs=95.4

Q ss_pred             CCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchH
Q 023063           55 MPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQV  134 (288)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  134 (288)
                      +++...+.+..+..++..++++++||++|++ |||+++...+++++++++.+.++.               |..+..+-+
T Consensus        81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~vYG~~liImIi~t~~~~~s~---------------~~~~~~~~m  144 (538)
T KOG0252|consen   81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKKVYGKELIIMIICSALSGLSV---------------GTTSPLGVM  144 (538)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHHHHhccCC---------------CCCCCcchh
Confidence            6777888888999999999999999999998 999999999999999998665543               223333467


Q ss_pred             HHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHH----HHHHHHHHHHHHhHh
Q 023063          135 AILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY----FVMGAAILVAVTVLV  197 (288)
Q Consensus       135 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~g~~i~~~~~~  197 (288)
                      +.+++.|+++|+|.|+=+|...+..+|....+      +||...+...    ++.-.|+.++-++..
T Consensus       145 ~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~------~RGa~iaavFa~Qg~GilaG~ivt~Iv~~  205 (538)
T KOG0252|consen  145 MTLCFFRFLLGIGIGGDYPLSATIMSESANKK------TRGAFIAAVFAMQGFGILAGGIVALIVSA  205 (538)
T ss_pred             hHHHHHHHHhhccccCCCcchHHHhhhhhhhc------cccceeEEEEEecchhHhhccHHHHHHHH
Confidence            88889999999999999999999999988877      5776665544    444444444444433

>TIGR00901 2A0125 AmpG-related permease

Probab=99.13  E-value=1.9e-09  Score=97.63  Aligned_cols=145  Identities=13%  Similarity=0.058  Sum_probs=107.9

Q ss_pred             hHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHH-HHHhhhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 023063           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFG-GTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (288)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i  101 (288)
                      .++.+++..++.+.+++...++++.|+++ +|+++.+.+.+..... +...++.+++|+++||+ |||+.+..+.++..+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~  287 (356)
T TIGR00901       210 QALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQAL  287 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHH
Confidence            35666666777788888888999999987 8999999988877665 56778899999999998 999998888877776


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 023063          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (288)
Q Consensus       102 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (288)
                      +..............        .   .+..+.+.+....++.+++.+...+...+++.|.+|++      +|++.++.+
T Consensus       288 ~~~~~~~~~~~~~~~--------~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~  350 (356)
T TIGR00901       288 TNAGFVWLASNGHHD--------G---ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPK------FGATQMALL  350 (356)
T ss_pred             HHHHHHHHHhcCccc--------c---cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCC------ccHHHHHHH
Confidence            655444321000000        0   00013455666677789999999999999999999998      699999987


Q ss_pred             HHHHH
Q 023063          182 YFVMG  186 (288)
Q Consensus       182 ~~~~~  186 (288)
                      +...+
T Consensus       351 ~~~~~  355 (356)
T TIGR00901       351 SSLSA  355 (356)
T ss_pred             HHHHh
Confidence            76554

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.12  E-value=7.1e-09  Score=92.27  Aligned_cols=171  Identities=16%  Similarity=0.111  Sum_probs=135.3

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i  101 (288)
                      +..|.+.+-.-+++..+|.+..|+|.++.+ .|+|..+++...+...+......+..-++++|.-.+|+.......++.+
T Consensus       208 ~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~-~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~  286 (395)
T COG2807         208 PLAWQVTLFMGLQSLLYYIVIGWLPAILID-RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLV  286 (395)
T ss_pred             chhHHHHHHHHhhHHHHHHHHHHHHHHHHH-cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            356666666677899999999999999975 6999999999999999999999999999999876788888888899999


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 023063          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (288)
Q Consensus       102 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (288)
                      |.+.+.+...                     +...+.  .+++|+|.|+.++..-.++.+..++.+     +.++..+..
T Consensus       287 G~~G~~~~P~---------------------~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~-----~Aa~LSgma  338 (395)
T COG2807         287 GLVGLLLAPG---------------------QLPILW--ALLLGLGQGGAFPLALTLILLRSSDAA-----IAAALSGMA  338 (395)
T ss_pred             HHHHHHHhhh---------------------hHHHHH--HHHHhCccchHHHHHHHHHHhhcCChH-----HHHHHHHHh
Confidence            9988876541                     222222  478899999999999999888776653     566677777


Q ss_pred             HHHHHHHHHHHHHhHhheeeccc-hhhhhhHhHHHHHHHHH
Q 023063          182 YFVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLSII  221 (288)
Q Consensus       182 ~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~i  221 (288)
                      +....+=...+|.+.|++.|..| |+..+...+...++..+
T Consensus       339 Qg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i  379 (395)
T COG2807         339 QGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLI  379 (395)
T ss_pred             hhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHH
Confidence            77777777789999999988776 77666655554444433

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.12  E-value=4.5e-09  Score=93.52  Aligned_cols=160  Identities=17%  Similarity=0.237  Sum_probs=136.0

Q ss_pred             HHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCC
Q 023063           35 KLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQ  114 (288)
Q Consensus        35 ~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~  114 (288)
                      +-..-++ ..+..-+.+++|+|.+.+++++++..++..+..++..+++.|+ |.++.+..++++..+|.++-...     
T Consensus        25 R~~itsv-gPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~~G~~iR~~~-----   97 (395)
T COG2807          25 RPAITSV-GPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIAAGILIRSLG-----   97 (395)
T ss_pred             chhhhhh-hhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHHHHHHHHhcc-----
Confidence            4443333 4455667789999999999999999999999999999999998 99999999999999998877643     


Q ss_pred             CCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 023063          115 LRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVT  194 (288)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~  194 (288)
                                        +...++.+-.+.|.|.+..+...|.++-+.||++       .+..++.|..+..+|+.+++.
T Consensus        98 ------------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl~~~aaLaa~  152 (395)
T COG2807          98 ------------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSLGAGAALAAA  152 (395)
T ss_pred             ------------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHHHHHHHHHhh
Confidence                              3456778888999999999999999999999985       889999999999999999999


Q ss_pred             hHhheeecc-chhhhhhHhHHHHHHHHHHHHHh
Q 023063          195 VLVYIQDNI-GWGWGLGIPTFAMFLSIIAFLIG  226 (288)
Q Consensus       195 ~~~~l~~~~-g~~~~f~~~~~~~~~~~i~~~~~  226 (288)
                      +...+.++. ||+....+-+...+++++..+.-
T Consensus       153 lavpla~~~~gW~~aL~~WAl~allAl~~WlPq  185 (395)
T COG2807         153 LAVPLAQHSGGWRGALGFWALLALLALLIWLPQ  185 (395)
T ss_pred             hhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhh
Confidence            988887776 79988877777777777766665

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.11  E-value=1.9e-09  Score=102.38  Aligned_cols=176  Identities=16%  Similarity=0.142  Sum_probs=143.1

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchh--HHHHHHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRF--WTITIASIIY   99 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr--~~i~~~~~l~   99 (288)
                      +.++.+.....+..++++....+++.|.. ..+++..+++.+.++..+...++.++.|+++|+. ..+  ....++.++.
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~  375 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA  375 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence            45555666677778888888888999987 7899999999999999999999999999999998 633  3444444454


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHH
Q 023063          100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (288)
Q Consensus       100 ~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (288)
                      .++.+.+.+..                      +++.+...-++.|+..|......+..+.|..+.+      +...+++
T Consensus       376 gl~~~~~p~~~----------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~------~l~~a~G  427 (509)
T KOG2504|consen  376 GLARLFLPFAT----------------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLE------KLSNAYG  427 (509)
T ss_pred             HHHHHHHHHhc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh------hcchHHH
Confidence            45444444443                      5667777778899999998888888999999988      6999999


Q ss_pred             HHHHHHHHHHHHHHHhHhheeeccc-hhhhhhHhHHHHHHHHHHHHHhc
Q 023063          180 WYYFVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLSIIAFLIGY  227 (288)
Q Consensus       180 ~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~i~~~~~~  227 (288)
                      +......++..++|.+.|++.+.+| |...|+..++..+++.+..++..
T Consensus       428 l~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  428 LLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            9999999999999999999998887 88999999888888776665554

>PRK11043 putative transporter; Provisional

Probab=99.09  E-value=2.4e-08  Score=91.91  Aligned_cols=148  Identities=13%  Similarity=0.064  Sum_probs=104.0

Q ss_pred             HHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhc
Q 023063           33 CEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAIL  112 (288)
Q Consensus        33 ~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~  112 (288)
                      +....++....+.|.|++ +.|+++.+.+.......++..++..+.+++.||+ |+|+.+........++.+.+......
T Consensus       214 ~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (401)
T PRK11043        214 ACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWLASLL  291 (401)
T ss_pred             HHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334455556677788876 4799999999887777778888899999999998 99987766665555554443332210


Q ss_pred             CCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHH
Q 023063          113 PQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVA  192 (288)
Q Consensus       113 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~  192 (288)
                      +                 ..+.+.+.+...+.+++.+...+...+...|..|+       +++++.++++.....++..+
T Consensus       292 ~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~g~~~~~~~~~~~~~  347 (401)
T PRK11043        292 S-----------------HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ-------ATGKAAALQNTLQLGLCFLA  347 (401)
T ss_pred             c-----------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-------cChHHHHHHHHHHHHHHHHH
Confidence            0                 01334444555667888888888877777777764       48999999988888888888


Q ss_pred             HHhHhheeeccchh
Q 023063          193 VTVLVYIQDNIGWG  206 (288)
Q Consensus       193 ~~~~~~l~~~~g~~  206 (288)
                      +.+.+.+.+.....
T Consensus       348 ~~~~g~l~~~~~~~  361 (401)
T PRK11043        348 SLLVSALISTPLLT  361 (401)
T ss_pred             HHHHHHccCCChhH
Confidence            88888776643333

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.09  E-value=1.4e-09  Score=97.40  Aligned_cols=141  Identities=17%  Similarity=0.248  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHhHHhhhhhHHHHhHHhcCCC-HHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Q 023063           27 IFSNEVCEKLAVVGFNTNMISYLTTQLHMP-LTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMIC  105 (288)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~  105 (288)
                      ++...++..+.++....+++.|+.+.+|++ ..+.+.......+...++.++.|+++||+ |+|+.+........++.+.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~  289 (352)
T PF07690_consen  211 LLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILGALG  289 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHH
Confidence            444455555677778888999989999999 89999999999999999999999999998 9888887777766666665


Q ss_pred             HHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHH
Q 023063          106 LTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVM  185 (288)
Q Consensus       106 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (288)
                      +.....                   ..+.....+..++.|++.+...+...+++.|..|++      ++++..+..+...
T Consensus       290 ~~~~~~-------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~  344 (352)
T PF07690_consen  290 LLLLPF-------------------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPE------YRGTAFGLFNSIG  344 (352)
T ss_dssp             HCCSHH-------------------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTC------HHHHHHHHHHHHH
T ss_pred             HHHHHH-------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHH
Confidence            554331                   113455556677788999999999999999999887      7999999999999


Q ss_pred             HHHHHHHH
Q 023063          186 GAAILVAV  193 (288)
Q Consensus       186 ~~g~~i~~  193 (288)
                      ++|+.++|
T Consensus       345 ~~~~~igP  352 (352)
T PF07690_consen  345 SLGGIIGP  352 (352)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHCC
Confidence            99999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00898 2A0119 cation transport protein

Probab=99.07  E-value=2.5e-09  Score=101.45  Aligned_cols=142  Identities=13%  Similarity=0.040  Sum_probs=98.0

Q ss_pred             hcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccc
Q 023063           52 QLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANK  131 (288)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  131 (288)
                      .++.+....   .....+...++.+++++++||+ |||+.+.++.++..++.+++....                   +.
T Consensus       352 ~~~~~~~~~---~~~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~-------------------~~  408 (505)
T TIGR00898       352 NLGGNIYLD---LFISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVP-------------------VD  408 (505)
T ss_pred             ccCCChHHH---HHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcC-------------------CC
Confidence            345543332   2344556677888899999998 999999998888777776665433                   01


Q ss_pred             chHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhheeeccchhhhhhH
Q 023063          132 GQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGI  211 (288)
Q Consensus       132 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~  211 (288)
                       ..+...+..++.+++.+...+...++.+|.+|++      .|+.+.++.+....+|+.++|.+.+ + ...++...+.+
T Consensus       409 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~------~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~  479 (505)
T TIGR00898       409 -LYFLRTALAVLGKFGITSAFQMVYLYTAELYPTV------VRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVL  479 (505)
T ss_pred             -chHHHHHHHHHHHHHHHHHHHHHHHHhcccccHH------HHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHH
Confidence             1233334444555666666778889999999987      6999999999999999999999888 3 33455566666


Q ss_pred             hHHHHHHHHHHHHH
Q 023063          212 PTFAMFLSIIAFLI  225 (288)
Q Consensus       212 ~~~~~~~~~i~~~~  225 (288)
                      .+++.+++.+...+
T Consensus       480 ~~~~~~~~~~~~~~  493 (505)
T TIGR00898       480 FGGLALLAGILTLF  493 (505)
T ss_pred             HHHHHHHHHHHHHc
Confidence            66555555444433

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.06  E-value=3.3e-08  Score=89.96  Aligned_cols=148  Identities=12%  Similarity=-0.071  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHH
Q 023063           24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGM  103 (288)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~  103 (288)
                      .+...+..++...+.+....+.+.++.+.+|+++.+.+.......+...++.++.|++.||+ |||+.+..+..+..+..
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~  274 (377)
T PRK11102        196 VLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIMG  274 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHH
Confidence            34344444455555566666677788888999999999999999999999999999999998 99999988876654443


Q ss_pred             HHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHH
Q 023063          104 ICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF  183 (288)
Q Consensus       104 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (288)
                      +.+.....                  .+...+.+.++..+.+.+.+........++.|..|+       .+++..+..+.
T Consensus       275 ~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~  329 (377)
T PRK11102        275 IWLVVSAL------------------LDLGFWALVVGVAAFVGCVSMISSNAMAVILDEFPH-------MAGTASSLAGT  329 (377)
T ss_pred             HHHHHHHH------------------HhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhccccc-------cchHHHHHHHH
Confidence            33322210                  011233333444444444444555555667777663       47777776554


Q ss_pred             H-HHHHHHHHHHhHh
Q 023063          184 V-MGAAILVAVTVLV  197 (288)
Q Consensus       184 ~-~~~g~~i~~~~~~  197 (288)
                      . ..+|..+++.+.+
T Consensus       330 ~~~~~g~~~g~~~~~  344 (377)
T PRK11102        330 LRFGIGAIVGALLSL  344 (377)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            3 4567777776544

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.04  E-value=1.1e-08  Score=94.96  Aligned_cols=206  Identities=14%  Similarity=0.140  Sum_probs=138.9

Q ss_pred             HHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhc---cchhH-HHHHHHHHHHHHHH
Q 023063           29 SNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAY---AGRFW-TITIASIIYQIGMI  104 (288)
Q Consensus        29 ~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~---~Grr~-~i~~~~~l~~i~~~  104 (288)
                      ...+..++.+-.+..++..|.++.+|+++..+|.+..+.-+.-.+.-|+.|.+.||.   +||+| -++.+.+...+.+.
T Consensus        19 ~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~   98 (467)
T COG2211          19 LGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAV   98 (467)
T ss_pred             chhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHH
Confidence            445555666666778899999999999999999999999999999999999999975   47654 56666677777777


Q ss_pred             HHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHH
Q 023063          105 CLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV  184 (288)
Q Consensus       105 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (288)
                      +++.+.. .+               .++.....++...+.++++..++....++.+|+.++.+     +|.+..++....
T Consensus        99 l~F~~p~-~~---------------~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~-----ER~~l~s~R~~~  157 (467)
T COG2211          99 LLFITPD-FS---------------MTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQ-----ERASLTSWRMVF  157 (467)
T ss_pred             HHHcCCC-cc---------------cCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHH-----HHHHHHHHHHHH
Confidence            7766441 00               12344445566678899999999999999999987664     899999999999


Q ss_pred             HHHHHHHHHHhHhheeec-------cchhhhhhHhHHHHHHHHHHHHHhcc-ceeecCCCCC-hhhHHHHHHHHHHHhCc
Q 023063          185 MGAAILVAVTVLVYIQDN-------IGWGWGLGIPTFAMFLSIIAFLIGYP-LYRNLDPAGS-PFTRLLQVCVAAFRKRK  255 (288)
Q Consensus       185 ~~~g~~i~~~~~~~l~~~-------~g~~~~f~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~  255 (288)
                      .++|.++...+.+.+...       .||+..-.+.+++..+..+..+...+ +..+..+.++ ...+..+.+...+|||.
T Consensus       158 ~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~~~~~~~~~~~~Nrp  237 (467)
T COG2211         158 ASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKLKLKDSFLLIFKNRP  237 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccccccHHHHHHHHHccch
Confidence            999988877666554332       24554433333333333332222222 2222222222 34444555555666653

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.03  E-value=1.1e-08  Score=96.00  Aligned_cols=180  Identities=13%  Similarity=0.047  Sum_probs=119.8

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccch------hHHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGR------FWTITIA   95 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr------r~~i~~~   95 (288)
                      +.+|.+....++.+.+++.+..++|.|+.+.+|++..+.|+..++..+.+.+..+++|.++||...|      ++-+.-.
T Consensus       258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~  337 (466)
T KOG2532|consen  258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNT  337 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHh
Confidence            5788999999999999999999999999999999999999999999999999999999999998221      1111111


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhh
Q 023063           96 SIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTW  175 (288)
Q Consensus        96 ~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (288)
                      ......+..+..+.. .+            |+. .......+.++..+.|+..++..    .-..|..|.       .-+
T Consensus       338 i~~~~~ai~l~~l~~-~~------------~~~-~~~a~~~l~~~~~~~g~~~~Gf~----~~~~~~apq-------~a~  392 (466)
T KOG2532|consen  338 IAFGGPAVFLLVLAF-TS------------DEH-RLLAVILLTIAIGLSGFNISGFY----KNHQDIAPQ-------HAG  392 (466)
T ss_pred             HHHHHHHHHHHeeee-cC------------CCc-chHHHHHHHHHHHHcccchhhhH----hhhhhccch-------HHH
Confidence            122222222222211 11            000 00011122222222222222211    111222333       478


Q ss_pred             hHHHHHHHHHHHHHHHHHHhHhheeec---cchhhhhhHhHHHHHHHHHHHHHh
Q 023063          176 KYFNWYYFVMGAAILVAVTVLVYIQDN---IGWGWGLGIPTFAMFLSIIAFLIG  226 (288)
Q Consensus       176 ~~~~~~~~~~~~g~~i~~~~~~~l~~~---~g~~~~f~~~~~~~~~~~i~~~~~  226 (288)
                      ..++..+....+.++++|.+.+.+..+   ..|+..|.+.+++.+++.+.+.+.
T Consensus       393 ~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  393 FVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence            889999999999999999999988843   369999999988888877666554

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.00  E-value=7e-08  Score=88.56  Aligned_cols=70  Identities=13%  Similarity=0.134  Sum_probs=58.7

Q ss_pred             hhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHh
Q 023063           40 GFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISA  110 (288)
Q Consensus        40 ~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~  110 (288)
                      ....+.+.|+++++|+++.+.+.......+...++.++.|++.||+ |||+.+.++..+..++.+.+....
T Consensus       221 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~  290 (392)
T PRK10473        221 TFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALSP  290 (392)
T ss_pred             HHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445567788888999999999888888889999999999999998 999999999888888777766544

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.00  E-value=6.3e-08  Score=86.57  Aligned_cols=159  Identities=13%  Similarity=0.131  Sum_probs=107.0

Q ss_pred             HHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcc
Q 023063           45 MISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQ  124 (288)
Q Consensus        45 l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~  124 (288)
                      ....+-+++|++..|++.+.........+..++.|.++||+ |||+.-++..+++.++.+.-- ..              
T Consensus        56 Y~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~-~~--------------  119 (354)
T PF05631_consen   56 YLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKH-SS--------------  119 (354)
T ss_pred             hhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHh-cc--------------
Confidence            33344467999999999999999999999999999999998 999999988888888775332 22              


Q ss_pred             cccccccchHHHHHHHHHHHHHhccCcchhhhhhh-hcccCCCChhhhhhhhhHHHHHH-HHHHHHHHHHHHhHhheeec
Q 023063          125 VCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFG-ADQFDETDPKQATKTWKYFNWYY-FVMGAAILVAVTVLVYIQDN  202 (288)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~i~~~~~~~l~~~  202 (288)
                              +...++++|++.|++.....+.--+.+ .|. .+++- +++..+..++... +...+-.+.+..++-++.+.
T Consensus       120 --------~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh-~~~g~-~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~  189 (354)
T PF05631_consen  120 --------NYPVLLLGRVLGGIATSLLFSAFESWMVHEH-NKRGF-PQEWLSDTFSLATFFGNGVVAIGAGVVANVLADW  189 (354)
T ss_pred             --------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCC-ChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHH
Confidence                    578899999999999988877766643 443 22210 1113344444333 22223333444444455555


Q ss_pred             cch--hhhhhHhHHHHHHHHHHHHHhccc
Q 023063          203 IGW--GWGLGIPTFAMFLSIIAFLIGYPL  229 (288)
Q Consensus       203 ~g~--~~~f~~~~~~~~~~~i~~~~~~~~  229 (288)
                      .+.  ..+|....++.+++.+.+...+++
T Consensus       190 ~~~g~vaPF~~a~~~l~~~~~~I~~~W~E  218 (354)
T PF05631_consen  190 FGFGPVAPFDAAIVLLAVAAVLILKTWPE  218 (354)
T ss_pred             hCCCCcchHHHHHHHHHHHHHHHHhcccc
Confidence            554  577888877777776665554443

>PRK09669 putative symporter YagG; Provisional

Probab=99.00  E-value=1.3e-08  Score=95.24  Aligned_cols=161  Identities=14%  Similarity=0.090  Sum_probs=105.7

Q ss_pred             hHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 023063           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (288)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~  102 (288)
                      .++.++...++...+........+.|.+..++. +...+.+.....+...++.+++++++||+ |||+.+..+.++..++
T Consensus       230 ~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~~  307 (444)
T PRK09669        230 QWRIMFIFNVVLLTAVVTRGGATLYYVNYVLLR-PDLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVIL  307 (444)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhheeeeeecCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHH
Confidence            344444444444344333333333343333332 33334445555677778888999999998 9999998887665544


Q ss_pred             HHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCCh-hhhhhhhhHHHHH
Q 023063          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDP-KQATKTWKYFNWY  181 (288)
Q Consensus       103 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  181 (288)
                      .+...+..                    ..+.+.+++..++.+++.+...+...++++|..+.++. .++++.|..++.+
T Consensus       308 ~~~~~~~~--------------------~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~  367 (444)
T PRK09669        308 SALIFFIP--------------------PSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTN  367 (444)
T ss_pred             HHHHHHhC--------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHH
Confidence            43332211                    12455666777788999999999999999999875432 2334567788889


Q ss_pred             HHHHHHHHHHHHHhHhheeeccch
Q 023063          182 YFVMGAAILVAVTVLVYIQDNIGW  205 (288)
Q Consensus       182 ~~~~~~g~~i~~~~~~~l~~~~g~  205 (288)
                      .+...+|..+++.+.+.+.+..|+
T Consensus       368 ~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        368 LFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999887666665

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.99  E-value=2.3e-08  Score=89.19  Aligned_cols=199  Identities=14%  Similarity=0.093  Sum_probs=131.5

Q ss_pred             HHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH
Q 023063           29 SNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTI  108 (288)
Q Consensus        29 ~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~  108 (288)
                      ..............+.+..-+....+.+..+..++......++.++....|.++|++ ||||...+......+...+-..
T Consensus        84 g~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is~~  162 (528)
T KOG0253|consen   84 GMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVISGA  162 (528)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhhcC
Confidence            333444444555556566666777788889999999999999999999999999998 9999888776655554444443


Q ss_pred             HhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHH
Q 023063          109 SAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAA  188 (288)
Q Consensus       109 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  188 (288)
                      +.                      ++..+++.+.+.++|.|+ .|...++-.|..|..+      |....-.. ....+|
T Consensus       163 sp----------------------nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig  212 (528)
T KOG0253|consen  163 SP----------------------NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIG  212 (528)
T ss_pred             CC----------------------CeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHH
Confidence            33                      677788889999999999 7888888899888874      54444333 445667


Q ss_pred             HHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHHhc--cceeecCCCCChhhHHHHHHHHHHHhCccccCCC
Q 023063          189 ILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGY--PLYRNLDPAGSPFTRLLQVCVAAFRKRKLTMVTD  261 (288)
Q Consensus       189 ~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (288)
                      ..+...+.-....++|||+-.+...+-..+.+....+..  +++.-.  .+++ .+..+.+.+..|-++.+.|..
T Consensus       213 ~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~--~G~~-~kAletL~kiArmNg~qlplg  284 (528)
T KOG0253|consen  213 QVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLA--KGDD-YKALETLHKIARMNGKQLPLG  284 (528)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhh--cCCh-HHHHHHHHHHHHhcCCCCCcc
Confidence            777776666667778999876666543333333333322  232221  2222 233455566666555555543

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.97  E-value=7.4e-09  Score=93.69  Aligned_cols=140  Identities=13%  Similarity=0.081  Sum_probs=101.9

Q ss_pred             hHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 023063           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (288)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~  102 (288)
                      ..+.+....++.....+.+..+++.|+++.+|+++.+++.+.....+...++.+++|+++||+ |||+.+..+..+..++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~  304 (366)
T TIGR00886       226 HTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMG  304 (366)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHH
Confidence            344444455555556667778899999999999999999888888899999999999999998 9998888777666666


Q ss_pred             HHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHH
Q 023063          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (288)
Q Consensus       103 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (288)
                      ..++.+...                  ++.+.+...+...+.+++.|...+...++++|.+|+       +++...+..+
T Consensus       305 ~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-------~~g~~~g~~~  359 (366)
T TIGR00886       305 AFLVVLGLV------------------SPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRR-------ATGAVSGLVG  359 (366)
T ss_pred             HHHHHhcCC------------------CcchHHHHHHHHHHHHHHhccccchhhhcchhhchh-------hcccHHHHHH
Confidence            555544320                  001344444555556666777777777888888874       4888888877


Q ss_pred             HHHHHH
Q 023063          183 FVMGAA  188 (288)
Q Consensus       183 ~~~~~g  188 (288)
                      ...++|
T Consensus       360 ~~~~~g  365 (366)
T TIGR00886       360 AIGNLG  365 (366)
T ss_pred             HhccCC
Confidence            766655

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.94  E-value=2.2e-07  Score=85.95  Aligned_cols=111  Identities=15%  Similarity=0.131  Sum_probs=79.2

Q ss_pred             HHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhh
Q 023063           32 VCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAI  111 (288)
Q Consensus        32 ~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~  111 (288)
                      ++.-+.+-...++++.|+++ .|++..|.|.+.+...+...+++++.|+++||+..+||.+.+..++..+......... 
T Consensus        12 f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~-   89 (400)
T PF03825_consen   12 FLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSS-   89 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhc-
Confidence            33334444455788999975 6899999999999999999999999999999984467777666655555444443332 


Q ss_pred             cCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCC
Q 023063          112 LPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDE  165 (288)
Q Consensus       112 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~  165 (288)
                                           +.+.+++..++..+......+...++.-+...+
T Consensus        90 ---------------------~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~  122 (400)
T PF03825_consen   90 ---------------------SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD  122 (400)
T ss_pred             ---------------------cHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc
Confidence                                 445555556667777777777777777666654

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.94  E-value=1.7e-08  Score=93.95  Aligned_cols=189  Identities=14%  Similarity=0.115  Sum_probs=139.7

Q ss_pred             ccccCCcchHHHHHHHHHHHHHhHHhhhhhHHHHhHH-hcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccch-hHHH
Q 023063           15 KRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTT-QLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGR-FWTI   92 (288)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr-r~~i   92 (288)
                      +..+.+||.+++..+..++...-++.+.+..-.|+++ +.+.+.+-.|++++...++..++.+++|+-..|. |. |+-+
T Consensus        27 ~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k~Pl  105 (488)
T KOG2325|consen   27 DERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVKKPL  105 (488)
T ss_pred             cccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCcccCH
Confidence            3456789999999999999888887777777788875 4677888899999999999999999999999998 75 7778


Q ss_pred             HHHHHHHHHHHHHH-HHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhh
Q 023063           93 TIASIIYQIGMICL-TISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQA  171 (288)
Q Consensus        93 ~~~~~l~~i~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~  171 (288)
                      +.+.++..+|.++- .+.. .|+                + ..+++.++|++.|+|.|.. +..-+|+++....+     
T Consensus       106 i~s~ii~~~g~llY~~l~~-~~~----------------~-~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~-----  161 (488)
T KOG2325|consen  106 IVSFLIAIIGNLLYLALAY-VPN----------------G-VKYLMLVARILTGVGVGNF-AVLRAYIADASTVE-----  161 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHh-ccc----------------c-hHHHHHHHHHHcCcCcccH-HHHHHHHHhccCcc-----
Confidence            88888899988887 4433 222                2 6788999999999997754 45678888877666     


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhHh----heeecc---------chhhhhhHhHHHHHHHHHHHHHhccc
Q 023063          172 TKTWKYFNWYYFVMGAAILVAVTVLV----YIQDNI---------GWGWGLGIPTFAMFLSIIAFLIGYPL  229 (288)
Q Consensus       172 ~~~~~~~~~~~~~~~~g~~i~~~~~~----~l~~~~---------g~~~~f~~~~~~~~~~~i~~~~~~~~  229 (288)
                       .|.++++....+..+|..+||.+..    .....+         -|..+-++.+++.++.++.+.+..++
T Consensus       162 -dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E  231 (488)
T KOG2325|consen  162 -DRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKE  231 (488)
T ss_pred             -chHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheee
Confidence             3777777776666666666665543    222211         13445566777666766666655543

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.93  E-value=4.4e-08  Score=90.90  Aligned_cols=163  Identities=11%  Similarity=-0.068  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHHHHhHHhhhhhHHHHhHHh-cCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 023063           24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQ-LHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (288)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~  102 (288)
                      .+...+..++......+..++++.|+.+. .+.+...++.....+.....++.+++|+++||+ ++|+.+.++..+..+.
T Consensus       234 ~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~~  312 (410)
T TIGR00885       234 YREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMAL  312 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHH
Confidence            33334445555455556668889998653 245555556566667788889999999999998 9999988887777776


Q ss_pred             HHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHH
Q 023063          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (288)
Q Consensus       103 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (288)
                      .++.....                      ... .....++.++..+.++|.+.+...+..+++       .....+...
T Consensus       313 ~ll~~~~~----------------------~~~-~~~~l~~~glf~s~~fp~i~sl~~~~~g~~-------~~~~s~~l~  362 (410)
T TIGR00885       313 CLGSIFAG----------------------GHV-GLYCLTLCSAFMSLMFPTIYGIALKGLGQD-------TKYGAAGLV  362 (410)
T ss_pred             HHHHHHcC----------------------ChH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-------hhhhHHHHH
Confidence            66665533                      111 234455677778888899999999998875       222222233


Q ss_pred             HHHHHHHHHHHHhHhheeecc------chhhhhhHhHHHHHH
Q 023063          183 FVMGAAILVAVTVLVYIQDNI------GWGWGLGIPTFAMFL  218 (288)
Q Consensus       183 ~~~~~g~~i~~~~~~~l~~~~------g~~~~f~~~~~~~~~  218 (288)
                      ++ .+|+.+.|.+.|++.|..      +.+..|.++.++.+.
T Consensus       363 ~~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~  403 (410)
T TIGR00885       363 MA-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAV  403 (410)
T ss_pred             HH-HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHH
Confidence            33 399999999999999854      477778776655433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.92  E-value=7e-08  Score=89.69  Aligned_cols=162  Identities=19%  Similarity=0.192  Sum_probs=124.5

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i  101 (288)
                      |.+..+++..++...++....+....|.+..+|.++.+..+..........++.++...+.+|+ |+|+++.++.++.++
T Consensus       236 rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i  314 (467)
T COG2211         236 RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAV  314 (467)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHH
Confidence            3444445555555556555566677888888888888888888888888888899999999998 999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCCh-hhhhhhhhHHHH
Q 023063          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDP-KQATKTWKYFNW  180 (288)
Q Consensus       102 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  180 (288)
                      +.+++.+..                    ..+.+++++..++.++|.+...+..+++++|..+-.+- .+.++-|..++.
T Consensus       315 ~~~~~~f~~--------------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~  374 (467)
T COG2211         315 GYLLLYFTP--------------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSG  374 (467)
T ss_pred             HHHHHHhhc--------------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHH
Confidence            999888755                    12567777888899999999999999999998875432 234455777788


Q ss_pred             HHHHHHHHHHHHHHhHhheeeccc
Q 023063          181 YYFVMGAAILVAVTVLVYIQDNIG  204 (288)
Q Consensus       181 ~~~~~~~g~~i~~~~~~~l~~~~g  204 (288)
                      +....-+|..++..+.|++....|
T Consensus       375 ~tF~~K~g~ala~~~~g~~L~~~G  398 (467)
T COG2211         375 MTFFRKLGLALAGFIPGWILGAIG  398 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcC
Confidence            888777787777777666544444

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.91  E-value=1.4e-07  Score=87.26  Aligned_cols=180  Identities=12%  Similarity=0.038  Sum_probs=127.0

Q ss_pred             hHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 023063           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (288)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~  102 (288)
                      .+...++..++...+.-....+.+.|+++.-|.+....+...++..+.=.+...+.+++..|+ |.++++.++.+.+++=
T Consensus       208 ~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~vR  286 (400)
T PF03825_consen  208 RFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAVR  286 (400)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence            344444455555555555567788899865447777777777777777778888899999998 9999999999888877


Q ss_pred             HHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHH
Q 023063          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (288)
Q Consensus       103 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (288)
                      ..+...... |                ..........+..+.|+..+........|+.+..|++      .|+++.++++
T Consensus       287 ~~l~a~~~~-~----------------~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~------~~at~Q~l~~  343 (400)
T PF03825_consen  287 WLLYAYFSD-P----------------WPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPE------LRATAQGLYS  343 (400)
T ss_pred             HHHHHHhcC-C----------------cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcc------chHHHHHHHH
Confidence            777766520 0                0001122233345689989999999999999999998      6899999877


Q ss_pred             H-HHHHHHHHHHHhHhheeeccchhh------hhhHhHHHHHHHHHHHHHh
Q 023063          183 F-VMGAAILVAVTVLVYIQDNIGWGW------GLGIPTFAMFLSIIAFLIG  226 (288)
Q Consensus       183 ~-~~~~g~~i~~~~~~~l~~~~g~~~------~f~~~~~~~~~~~i~~~~~  226 (288)
                      . ...+|..++..++|++.+++|-+.      .+.+.+++.++..+.+...
T Consensus       344 ~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~  394 (400)
T PF03825_consen  344 ALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVIL  394 (400)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            6 468999999999999999877543      3444554444444444443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.91  E-value=2.6e-07  Score=84.77  Aligned_cols=138  Identities=9%  Similarity=-0.036  Sum_probs=95.1

Q ss_pred             hhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 023063           41 FNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPC  120 (288)
Q Consensus        41 ~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~  120 (288)
                      +....+.|+++.+|+++.+.++......++..++.++.+++.||+ |++...  ......++.+...... ..       
T Consensus       226 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~--~~~~~~~~~~~~~~~~-~~-------  294 (394)
T PRK11652        226 FEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQ--SVICCLLAGLLMWIPG-WF-------  294 (394)
T ss_pred             HHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHH-Hh-------
Confidence            344566788888999999999888777778888888888888887 743322  2222222222222111 00       


Q ss_pred             CCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhhee
Q 023063          121 EGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQ  200 (288)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~  200 (288)
                               ...+.+.+....++.++|.+...+...++..|.+|+       +++...+..+...++|+.+++.+.+.+.
T Consensus       295 ---------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~~~lg~~~~~~~~~~~~  358 (394)
T PRK11652        295 ---------GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY-------LAGTAGALLGGLQNIGSGLAALLSAMLP  358 (394)
T ss_pred             ---------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------cchHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence                     011344556667788888888888888888888875       4788888888889999999999988876


Q ss_pred             eccch
Q 023063          201 DNIGW  205 (288)
Q Consensus       201 ~~~g~  205 (288)
                      ....+
T Consensus       359 ~~~~~  363 (394)
T PRK11652        359 QTGQF  363 (394)
T ss_pred             CCchH
Confidence            55333

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.90  E-value=1e-07  Score=87.61  Aligned_cols=179  Identities=13%  Similarity=0.102  Sum_probs=138.3

Q ss_pred             CcchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcC---CCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHH
Q 023063           20 GMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLH---MPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIAS   96 (288)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~   96 (288)
                      ..|++|.+.+........|+.+-...+.|.+..++   .++...|.+.+...+.-.+...+..++-+|+ |.|+.++++.
T Consensus       218 k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag  296 (412)
T PF01306_consen  218 KMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAG  296 (412)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHH
Confidence            44677777766666666666666667888875443   3455677888888888899999999999998 9999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhh
Q 023063           97 IIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWK  176 (288)
Q Consensus        97 ~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (288)
                      .++.+=.++++++.                      +++.+.+...+-++-.+.......-|+++.+|++      ..++
T Consensus       297 ~i~~iRi~~~~~~~----------------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~r------lsAt  348 (412)
T PF01306_consen  297 VIMAIRIIGSGFAT----------------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKR------LSAT  348 (412)
T ss_dssp             HHHHHHHHHHHT------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GG------GHHH
T ss_pred             HHHHHHHHHHhhhc----------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHh------HHHH
Confidence            98888888887766                      6777888888889888888888899999999986      4556


Q ss_pred             HHHH-HHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHHhc
Q 023063          177 YFNW-YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGY  227 (288)
Q Consensus       177 ~~~~-~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~~  227 (288)
                      .... ++.+.++|..+.+.+.|++.++.|++..|++.+.+++...++-.+..
T Consensus       349 ~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l  400 (412)
T PF01306_consen  349 LYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTL  400 (412)
T ss_dssp             HHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeee
Confidence            6655 46788999999999999999999999999888777665555444433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.89  E-value=1.2e-08  Score=93.75  Aligned_cols=75  Identities=11%  Similarity=-0.104  Sum_probs=58.1

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASI   97 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~   97 (288)
                      +..+......++..+++-...++++.+|++..|++..+.|.+.+...+...+.+|+.|.++||. |.||.++....
T Consensus         7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~   81 (412)
T PF01306_consen    7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIA   81 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHH
Confidence            3455555556666666666778999999988999999999999999999999999999999998 97776655443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.87  E-value=4.3e-08  Score=87.55  Aligned_cols=145  Identities=10%  Similarity=0.053  Sum_probs=100.2

Q ss_pred             hHHHHHHHHHHHHHhHHhhhhhHHHHhHHhc-------------------CCCHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 023063           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQL-------------------HMPLTKAANTLTNFGGTGSLTPLIGAFVAD   83 (288)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~-------------------~~~~~~~~~~~~~~~~~~~i~~~~~G~laD   83 (288)
                      ..+.+...-|...+.||+..-......+...                   ..+...-..=..+....-+.+.++.+++.|
T Consensus       327 ttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~ive  406 (528)
T KOG0253|consen  327 TTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVE  406 (528)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHH
Confidence            3444455666778888887543333332110                   111111122234556777889999999999


Q ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhccc
Q 023063           84 AYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQF  163 (288)
Q Consensus        84 r~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~  163 (288)
                      |+ |||++|-.+.+++.+..+++....                 . .+....+++.+|+++..    .+.+.+.|..|.+
T Consensus       407 rl-GRKkTMal~l~~f~iflfll~~c~-----------------~-rn~~tvllf~arafisg----~fqvaYvYtPEVy  463 (528)
T KOG0253|consen  407 RL-GRKKTMALSLILFGIFLFLLTTCK-----------------T-RNAYTVLLFTARAFISG----AFQVAYVYTPEVY  463 (528)
T ss_pred             Hh-cchhHHHHHHHHHHHHHHHHHHhc-----------------C-cchhHHHHHHHHHHHhc----hheEEEEecCccc
Confidence            97 999999999999988888777644                 1 12234455566665543    3456788999999


Q ss_pred             CCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhH
Q 023063          164 DETDPKQATKTWKYFNWYYFVMGAAILVAVTVL  196 (288)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~  196 (288)
                      |+.      .|+...|.-..+..+|+++.|.++
T Consensus       464 PTa------vRatgvGtcSsmaRIggI~~p~iA  490 (528)
T KOG0253|consen  464 PTA------VRATGVGTCSSMARIGGIFSPVIA  490 (528)
T ss_pred             chh------hhhcchhhhhhHHhhhhhhhhHHH
Confidence            998      699999998999999999999888

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.83  E-value=2.8e-07  Score=86.41  Aligned_cols=161  Identities=12%  Similarity=0.064  Sum_probs=106.8

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i  101 (288)
                      +..+..+...+++.+.-.....+....+-++-|++..++.++.........++.+.+.++-||+ |||+.++.+..++.+
T Consensus       269 ~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~~~~  347 (485)
T KOG0569|consen  269 RPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSLMAV  347 (485)
T ss_pred             HHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHH
Confidence            3444444555555444333333333334456799999999999999999999999999999998 999999999998888


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCcccccccccchHHH---HHHHHHHHHHhccCc-chhhhhhhhcccCCCChhhhhhhhhH
Q 023063          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAI---LYVSLLLAALGSGGI-RPCVVAFGADQFDETDPKQATKTWKY  177 (288)
Q Consensus       102 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~g~g~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (288)
                      ..+++.....+...                ...|.   .+++.++..+..+.- .|..+-+.+|.+|.+      .|..+
T Consensus       348 ~~~~~~~~~~l~~~----------------~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~------~R~aa  405 (485)
T KOG0569|consen  348 ALLLMSIALFLSNS----------------FGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQS------ARSAA  405 (485)
T ss_pred             HHHHHHHHHHHHHH----------------hhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCcc------chHHH
Confidence            88877765422111                00111   223333333333332 356677889999998      48888


Q ss_pred             HHHHHHHHHHHHHHHHHhHhheeeccch
Q 023063          178 FNWYYFVMGAAILVAVTVLVYIQDNIGW  205 (288)
Q Consensus       178 ~~~~~~~~~~g~~i~~~~~~~l~~~~g~  205 (288)
                      +++-.....+..++-......+.+..|-
T Consensus       406 ~s~~~~~~w~~~fiv~~~fp~l~~~~g~  433 (485)
T KOG0569|consen  406 QSVATAVNWLSNFIVGFAFPPLQNVIGP  433 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            8877777767776666666666665553

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.78  E-value=1.3e-06  Score=75.31  Aligned_cols=138  Identities=11%  Similarity=0.093  Sum_probs=103.1

Q ss_pred             hHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 023063           37 AVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLR  116 (288)
Q Consensus        37 ~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~  116 (288)
                      ..|.+.. ....+++.+|++..|.+.+.....++..++ ++.|.+.|++ |.+.++.+|.+...+|+.++++...-    
T Consensus        17 t~Y~Fs~-yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-gp~~~l~iG~~~~~~GY~~~~l~~~~----   89 (250)
T PF06813_consen   17 TTYTFSA-YSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-GPWVVLLIGAVLGFVGYGLLWLAVSG----   89 (250)
T ss_pred             cccchhh-hhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhC----
Confidence            4444433 455778899999999999999999998875 8889999998 99999999999999999999876510    


Q ss_pred             CCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhH
Q 023063          117 PPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVL  196 (288)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~  196 (288)
                                 .......|.+.+...+.+.|....+........+.||.+       ||.+.++.-....+++.+-..+.
T Consensus        90 -----------~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~-------RG~vvgilk~~~GLSaai~t~i~  151 (250)
T PF06813_consen   90 -----------RIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRS-------RGTVVGILKGFFGLSAAIFTQIY  151 (250)
T ss_pred             -----------ccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCccc-------cCceehhhhHHHHhHHHHHHHHH
Confidence                       001125566666666666666666555556667899874       99999988887778877765554


Q ss_pred             hhe
Q 023063          197 VYI  199 (288)
Q Consensus       197 ~~l  199 (288)
                      ..+
T Consensus       152 ~~~  154 (250)
T PF06813_consen  152 SAF  154 (250)
T ss_pred             HHH
Confidence            433

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.75  E-value=2.8e-07  Score=87.22  Aligned_cols=183  Identities=9%  Similarity=0.024  Sum_probs=121.6

Q ss_pred             HHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHH----HHHHHHHHHHHHhhhHHHHH----HHHHhccchhHH--HHHHHH
Q 023063           28 FSNEVCEKLAVVGFNTNMISYLTTQLHMPLTK----AANTLTNFGGTGSLTPLIGA----FVADAYAGRFWT--ITIASI   97 (288)
Q Consensus        28 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~G----~laDr~~Grr~~--i~~~~~   97 (288)
                      ++..++....+.-..+.++.|..+..+.+...    .+++.++..+...+.+++..    ++.||..+.+..  +.+|++
T Consensus       278 ~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~  357 (475)
T TIGR00924       278 FLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGML  357 (475)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Confidence            33344444555555566777776654433211    44555555555555555544    455542133333  367788


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhH
Q 023063           98 IYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  177 (288)
Q Consensus        98 l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (288)
                      +..++.+.+.+......             .....+++++....++.++|.....+...++.++..|++      .||++
T Consensus       358 l~~~~~~~~~~~~~~~~-------------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~------~~g~~  418 (475)
T TIGR00924       358 FCGASFLTFAASIWFAD-------------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQR------LMGQM  418 (475)
T ss_pred             HHHHHHHHHHHHHhhcC-------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHH------HHHHH
Confidence            88888777665421100             001236788888999999999999999999999999987      79999


Q ss_pred             HHHHHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHHhccc
Q 023063          178 FNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPL  229 (288)
Q Consensus       178 ~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~~~~  229 (288)
                      ++.+.....+|..+++.+........+|...|...+++.++..++++...+.
T Consensus       419 ~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (475)
T TIGR00924       419 LGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVPW  470 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999888876666677777777776666655555554443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK11462 putative transporter; Provisional

Probab=98.75  E-value=7.3e-07  Score=84.05  Aligned_cols=160  Identities=13%  Similarity=0.077  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHH
Q 023063           24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGM  103 (288)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~  103 (288)
                      +..++...++...+..........|.+..+|.. ...+.+...+.+...++.+++++++||+ |+|+.+..+..+..+..
T Consensus       230 ~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~-~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~~  307 (460)
T PRK11462        230 WRIVGLLTIFNILAVCVRGGAMMYYVTWILGTP-EVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVIS  307 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHH
Confidence            333333444444444444444445555444443 3344566677778888999999999998 99988765554443333


Q ss_pred             HHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCCh-hhhhhhhhHHHHHH
Q 023063          104 ICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDP-KQATKTWKYFNWYY  182 (288)
Q Consensus       104 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  182 (288)
                      ++..+..                    ..+...+++..++.+++.+...+...++++|..+.++- .++++-|..++...
T Consensus       308 ~~~~~~~--------------------~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~  367 (460)
T PRK11462        308 LAMFFVP--------------------MQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTL  367 (460)
T ss_pred             HHHHHhc--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHH
Confidence            3332221                    11222334444556777777677777888887764321 12223455567777


Q ss_pred             HHHHHHHHHHHHhHhheeeccch
Q 023063          183 FVMGAAILVAVTVLVYIQDNIGW  205 (288)
Q Consensus       183 ~~~~~g~~i~~~~~~~l~~~~g~  205 (288)
                      +...+|..+++.+.+.+.+..||
T Consensus       368 f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        368 FVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCC
Confidence            78888888888877766544444

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.72  E-value=1.1e-06  Score=81.49  Aligned_cols=170  Identities=15%  Similarity=-0.002  Sum_probs=104.6

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i  101 (288)
                      +.++...+..++....++.+....|.|+++.+|.++.+.++.......+..++..+.+.+.++. ++++.+.....+..+
T Consensus       218 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~i  296 (413)
T PRK15403        218 RLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLV  296 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHH
Confidence            4555555556666677777777789999998999999999987777777777777777766554 444444333444444


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 023063          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (288)
Q Consensus       102 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (288)
                      +.+++......                 ...+++..+++.++.++|.+...++.....-  .+.+.     .+|+..+.+
T Consensus       297 g~~l~~~~~~~-----------------~~~~~~~~~~~~~l~~~G~~~~~p~~~~~al--~~~~~-----~~G~a~a~~  352 (413)
T PRK15403        297 GLALLIVGNLL-----------------WPHVWLWSVLGTSLYAFGIGLIFPTLFRFTL--FSNNL-----PKGTVSASL  352 (413)
T ss_pred             HHHHHHHHHHH-----------------ccccHHHHHHHHHHHHHHHHHHhHHHHHHHh--ccCCC-----CCcHHHHHH
Confidence            44444332100                 0012333456677788888887777764332  22222     256666777


Q ss_pred             HHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHH
Q 023063          182 YFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMF  217 (288)
Q Consensus       182 ~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~  217 (288)
                      +.....+..+++...+++.++ +-...|....++..
T Consensus       353 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~  387 (413)
T PRK15403        353 NMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAG  387 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHH
Confidence            777777777777777776554 44455555444433

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.70  E-value=2e-09  Score=102.92  Aligned_cols=191  Identities=13%  Similarity=0.207  Sum_probs=2.9

Q ss_pred             HhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 023063           36 LAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQL  115 (288)
Q Consensus        36 ~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~  115 (288)
                      ....++.....+-+.++|+++.+++|++.+.+.++..+..++..++++|. .|-|.+-.|.+++.+|.+++++..++-..
T Consensus        16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~~lPhf~~~~   94 (539)
T PF03137_consen   16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLFALPHFLSGP   94 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHHhccHhhcCC
Confidence            55566666666777889999999999999999999999999999999997 77788888999999999988865433221


Q ss_pred             CCCC------CC---Ccccc-------------------cccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCC
Q 023063          116 RPPP------CE---GEQVC-------------------QEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETD  167 (288)
Q Consensus       116 ~~~~------~~---~~~~~-------------------~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~  167 (288)
                      +...      +.   +...|                   .......+.+++++-++.|+|....++...+|+=|..+++ 
T Consensus        95 y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~-  173 (539)
T PF03137_consen   95 YSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKK-  173 (539)
T ss_dssp             ---------------------------------------------------------SSS--------------------
T ss_pred             CccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccc-
Confidence            1000      00   01222                   1112223567778889999999999999999999998887 


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHHhHhheeec---------------------cc-hhhhhhHhHHHHHHHHHHHHH
Q 023063          168 PKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN---------------------IG-WGWGLGIPTFAMFLSIIAFLI  225 (288)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~---------------------~g-~~~~f~~~~~~~~~~~i~~~~  225 (288)
                           .-+.+.++++....+|..+|.++++.+.+.                     .| |+.+|.+.+++.++..+.++.
T Consensus       174 -----~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~  248 (539)
T PF03137_consen  174 -----NSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFF  248 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -----cCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                 578888999999999999999888764321                     23 888888888877777776666


Q ss_pred             hccceeec
Q 023063          226 GYPLYRNL  233 (288)
Q Consensus       226 ~~~~~~~~  233 (288)
                      +.++.++.
T Consensus       249 FPk~lp~~  256 (539)
T PF03137_consen  249 FPKKLPGT  256 (539)
T ss_dssp             --------
T ss_pred             CCccCCCc
Confidence            65555444

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.65  E-value=4.2e-07  Score=85.91  Aligned_cols=166  Identities=15%  Similarity=0.085  Sum_probs=106.6

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhc---cchhHHHHHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAY---AGRFWTITIASII   98 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~---~Grr~~i~~~~~l   98 (288)
                      ..+|...+..++.....|++..++|.|+++..|++..+++.+...+.+++.++.+++|+++||.   +.+|......+.+
T Consensus       273 p~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~  352 (495)
T KOG2533|consen  273 PGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCL  352 (495)
T ss_pred             hhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            4677788899999999999999999999986779999999999999999999999999999993   2677666666544


Q ss_pred             HHHHH-HHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhH
Q 023063           99 YQIGM-ICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  177 (288)
Q Consensus        99 ~~i~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (288)
                      +.+.. +.+....                      .......+.+....+.....++...-..+....+.     ++-..
T Consensus       353 ~~~~g~~~l~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~-----k~~~~  405 (495)
T KOG2533|consen  353 YAIIGAISLLAAA----------------------VLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNT-----KALTT  405 (495)
T ss_pred             HHHHHHHHHHhhc----------------------cchHHhHHHHhcchhhHHHHHHHHhhccccccchH-----HhHHH
Confidence            44333 3333222                      11222222222233333333444444555554442     44445


Q ss_pred             HHHHHHHHHHHHHHHH-HhHhheeeccchhhhhhHhHH
Q 023063          178 FNWYYFVMGAAILVAV-TVLVYIQDNIGWGWGLGIPTF  214 (288)
Q Consensus       178 ~~~~~~~~~~g~~i~~-~~~~~l~~~~g~~~~f~~~~~  214 (288)
                      .+....+.+.++.++| +..+.....++|...|....+
T Consensus       406 ~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~~  443 (495)
T KOG2533|consen  406 VSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLVA  443 (495)
T ss_pred             HhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHHHH
Confidence            5555555555555544 444555666788888744433

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.63  E-value=3.2e-07  Score=89.08  Aligned_cols=199  Identities=12%  Similarity=0.178  Sum_probs=147.1

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i  101 (288)
                      +.+..++....+....+.+......+-+.+.|+++.++.|++...+.++..+...+..+.+-|. -|-+.+-+|.+++.+
T Consensus        96 k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~l  174 (735)
T KOG3626|consen   96 KMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMGL  174 (735)
T ss_pred             chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHHH
Confidence            4444444444443333346666677778889999999999999999999999999999999997 788888999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCCC------------------------------Cc-cccc--ccccchHH-HHHHHHHHHHHh
Q 023063          102 GMICLTISAILPQLRPPPCE------------------------------GE-QVCQ--EANKGQVA-ILYVSLLLAALG  147 (288)
Q Consensus       102 ~~~~~~~~~~~p~~~~~~~~------------------------------~~-~~~~--~~~~~~~~-~~~~~~~l~g~g  147 (288)
                      +.+++++..    +...++.                              ++ ..|.  ..++..++ +++++-++.|+|
T Consensus       175 gsll~alPH----f~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG  250 (735)
T KOG3626|consen  175 GSLLFALPH----FFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIG  250 (735)
T ss_pred             HHHHHhChH----HhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcC
Confidence            999888653    2222221                              00 1121  22333344 666778899999


Q ss_pred             ccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhheeec------------------cc-hhhh
Q 023063          148 SGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN------------------IG-WGWG  208 (288)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~------------------~g-~~~~  208 (288)
                      ....++...+|+=|...++      +-...+++++....+|.++|.++++++.+.                  .| ||.+
T Consensus       251 ~Tpi~tlGisYiDDnvk~~------~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlG  324 (735)
T KOG3626|consen  251 ATPIFTLGISYIDDNVKKK------NSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLG  324 (735)
T ss_pred             CCCCccCCCcccccccccc------CCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHH
Confidence            9999999999998877766      588889999999999999999988875321                  23 8889


Q ss_pred             hhHhHHHHHHHHHHHHHhcccee
Q 023063          209 LGIPTFAMFLSIIAFLIGYPLYR  231 (288)
Q Consensus       209 f~~~~~~~~~~~i~~~~~~~~~~  231 (288)
                      |++.+.+.++..+.++++.+..+
T Consensus       325 FLi~g~~~~~~a~p~f~fPk~lp  347 (735)
T KOG3626|consen  325 FLICGALLLFSAVPLFFFPKELP  347 (735)
T ss_pred             HHHHHHHHHHHHHHHHhCcccCc
Confidence            99999888888887777765544

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.62  E-value=2.9e-06  Score=77.75  Aligned_cols=189  Identities=13%  Similarity=0.064  Sum_probs=118.4

Q ss_pred             hhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 023063           43 TNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEG  122 (288)
Q Consensus        43 ~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~  122 (288)
                      +.+.+|..+-+| +...+-+...++++......+.+-|+.|++ |-|.+.+++..+..+|..+-.++. .|+.-+     
T Consensus        65 a~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~llgt~ln~iGa~Ir~iss-~p~v~~-----  136 (480)
T KOG2563|consen   65 APINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLLGTVLNGIGAWIRLISS-LPFVPP-----  136 (480)
T ss_pred             hhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHHHHHHHHHHHHHhhhcc-Cccccc-----
Confidence            345667777778 777778889999999999999999999998 999999999999999999888766 342211     


Q ss_pred             cccccccccchHH--HHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhhee
Q 023063          123 EQVCQEANKGQVA--ILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQ  200 (288)
Q Consensus       123 ~~~~~~~~~~~~~--~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~  200 (288)
                                ..+  +...+-.+.+...-.+...-+-+.+-+|+++      +|..+...-.++..+|..++.++.+.+.
T Consensus       137 ----------~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~------qra~A~~~~v~~n~LGvavg~llppilV  200 (480)
T KOG2563|consen  137 ----------LFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPD------QRAIATVLGVMGNPLGVAVGFLLPPILV  200 (480)
T ss_pred             ----------cchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcc------hhhhhhhHHHhcchHHHHHHhhccceec
Confidence                      222  3444444555444444433344556677777      5888877766676777777776666655


Q ss_pred             ecc------chhh--hhhHhHHHHHHHHHHHHHhccceeecCCCCC---hh-hHHHHHHHHHHHhCc
Q 023063          201 DNI------GWGW--GLGIPTFAMFLSIIAFLIGYPLYRNLDPAGS---PF-TRLLQVCVAAFRKRK  255 (288)
Q Consensus       201 ~~~------g~~~--~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~  255 (288)
                      .+.      .|..  .|+...++..+.++...+.+++.++-||...   +. .+..+.+++.++|+.
T Consensus       201 ~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~~~~f~~si~~~~~n~~  267 (480)
T KOG2563|consen  201 PSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQDASFPKSIKSCFKNRQ  267 (480)
T ss_pred             CCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhhcCcHHHHHHHHHcCcc
Confidence            443      3443  2333333333333444444444344333221   11 124555566666653

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.61  E-value=3.3e-06  Score=76.82  Aligned_cols=169  Identities=12%  Similarity=0.154  Sum_probs=129.8

Q ss_pred             HHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Q 023063           30 NEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTIS  109 (288)
Q Consensus        30 ~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~  109 (288)
                      ..+...++++.--..+-+|--+.||++..+...++.....+..++..+.|++..|..+++++..+++....++..+..++
T Consensus       216 fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a  295 (403)
T PF03209_consen  216 FLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILA  295 (403)
T ss_pred             HHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555556677888899999999999999999999999999999998866699999999999888888877766


Q ss_pred             hhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHH
Q 023063          110 AILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAI  189 (288)
Q Consensus       110 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  189 (288)
                      ..                   ..+.+.+..+.+++|+|.|.+.....+.+-|...++      +.|..++.+..++.+..
T Consensus       296 ~~-------------------~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~------~aG~~mG~WGaaQA~A~  350 (403)
T PF03209_consen  296 GP-------------------LGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAG------RAGLFMGAWGAAQAIAR  350 (403)
T ss_pred             Hh-------------------cccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCc------chhHHHHHHHHHHHHHH
Confidence            51                   225678889999999999999888888888888776      57888888888888877


Q ss_pred             HHHHHhHhheee----------ccchhhhhhHhHHHHHHHHHHH
Q 023063          190 LVAVTVLVYIQD----------NIGWGWGLGIPTFAMFLSIIAF  223 (288)
Q Consensus       190 ~i~~~~~~~l~~----------~~g~~~~f~~~~~~~~~~~i~~  223 (288)
                      .++..++|.+.|          ..+|...|.+-++..++++++.
T Consensus       351 Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll  394 (403)
T PF03209_consen  351 GLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL  394 (403)
T ss_pred             HHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            777777776533          1245555665555555554443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.60  E-value=2e-06  Score=80.41  Aligned_cols=162  Identities=15%  Similarity=0.090  Sum_probs=117.9

Q ss_pred             hHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhc--cc--hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 023063           44 NMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAY--AG--RFWTITIASIIYQIGMICLTISAILPQLRPPP  119 (288)
Q Consensus        44 ~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~--~G--rr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~  119 (288)
                      ....|+++++|+++++......+..+-. ..-++.|.++|.+  +|  ||+-++++.++..++.+.+....   ..    
T Consensus        11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~---~~----   82 (433)
T PF03092_consen   11 AIYPFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLP---AS----   82 (433)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcc---cc----
Confidence            3556888999999999887766665544 4568889999987  34  55566667766655555554432   21    


Q ss_pred             CCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhhe
Q 023063          120 CEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYI  199 (288)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l  199 (288)
                                 ..+.....+..++..+|........-+++.|...+++.    .++...++.+....+|+.++..+.|.+
T Consensus        83 -----------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~----~~g~lqS~~~~~~~~G~lv~~~l~G~l  147 (433)
T PF03092_consen   83 -----------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPE----SRGDLQSFVWGVRSVGSLVGSLLSGPL  147 (433)
T ss_pred             -----------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc----hhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence                       11334445556677888888888999999999876642    478888899999999999999999999


Q ss_pred             eeccchhhhhhHhHHHHHHHHHHHHHhcc
Q 023063          200 QDNIGWGWGLGIPTFAMFLSIIAFLIGYP  228 (288)
Q Consensus       200 ~~~~g~~~~f~~~~~~~~~~~i~~~~~~~  228 (288)
                      .+..+++..|.+.+++..+..+......+
T Consensus       148 ~~~~~~~~~f~i~~~~~~l~~~~~~~~~~  176 (433)
T PF03092_consen  148 LDSFGPQGVFLISAALPLLMLIVALFLLE  176 (433)
T ss_pred             hhcCCCeEEehHHHHHHHHHHHHHHHhhh
Confidence            99999999998887777666554444443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.60  E-value=1.2e-07  Score=85.42  Aligned_cols=180  Identities=11%  Similarity=0.057  Sum_probs=121.1

Q ss_pred             hHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccc--hhHHHHHHHHHHH
Q 023063           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAG--RFWTITIASIIYQ  100 (288)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~G--rr~~i~~~~~l~~  100 (288)
                      .++...+...+.+.+.-..-+.++.++.+.+..+.-+.+.......+...++..+.|.++||+ +  |......++++..
T Consensus       271 ~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~-~~~~wl~~~~gl~~~G  349 (464)
T KOG3764|consen  271 YILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKY-PHLRWLLSLGGLATVG  349 (464)
T ss_pred             hHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhc-CchhHHHHHHHHHHHH
Confidence            444444444445555555567788888888874444888888888899999999999999999 8  5333344444433


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 023063          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (288)
Q Consensus       101 i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (288)
                      .......++.                      ++..+++-....+++.+...+..........+.+...+-...|...++
T Consensus       350 ~~~~~iP~~~----------------------~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaI  407 (464)
T KOG3764|consen  350 VSSGPIPFAT----------------------SIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAI  407 (464)
T ss_pred             HHhchhHhhh----------------------hHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHH
Confidence            3333333333                      445555556666677777666666666666655433222258899999


Q ss_pred             HHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHH
Q 023063          181 YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (288)
Q Consensus       181 ~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~  225 (288)
                      ...+..+|..+||.++|.+.+..|++|.-.+.++.-++-..++..
T Consensus       408 ad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~l  452 (464)
T KOG3764|consen  408 ADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLL  452 (464)
T ss_pred             HHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999887666555554444333333

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.52  E-value=4.6e-06  Score=75.58  Aligned_cols=150  Identities=15%  Similarity=0.073  Sum_probs=111.4

Q ss_pred             HHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH
Q 023063           29 SNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTI  108 (288)
Q Consensus        29 ~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~  108 (288)
                      +..|+.--.=..+.+++++|+.+..|.+..+++...+.+..+..++..++.++-.|+ -..|.+.+..++..+..+...+
T Consensus       243 l~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~ill~~~~~l  321 (422)
T COG0738         243 LAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAILLLLAVAL  321 (422)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHH
Confidence            344444333334557899999888999999999999999999999999999999987 8888887766554444444444


Q ss_pred             HhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHH
Q 023063          109 SAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAA  188 (288)
Q Consensus       109 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  188 (288)
                      ..                      +.+ -..+..+.|+..+.++|++.+...+..+.+.     +.++..-   ...-+|
T Consensus       322 ~~----------------------g~v-~~~~l~~ig~F~simfPTIfslal~~l~~~t-----s~~s~~l---~maivG  370 (422)
T COG0738         322 IG----------------------GVV-ALYALFLIGLFNSIMFPTIFSLALKNLGEHT-----SVGSGLL---VMAIVG  370 (422)
T ss_pred             hc----------------------ChH-HHHHHHHHHHHhHHHHHHHHHHHHhccCccc-----cccceee---eeheec
Confidence            33                      222 2334567788899999999999999999553     3444332   245679


Q ss_pred             HHHHHHhHhheeeccchhhhhh
Q 023063          189 ILVAVTVLVYIQDNIGWGWGLG  210 (288)
Q Consensus       189 ~~i~~~~~~~l~~~~g~~~~f~  210 (288)
                      +.+.|.+.|++.|.+|....+.
T Consensus       371 GAiiP~l~G~i~d~~g~~~~~~  392 (422)
T COG0738         371 GAIIPPLQGVIADMFGIQLTFL  392 (422)
T ss_pred             chHHHHHHHHHHHhhhhHHHHH
Confidence            9999999999999998877665

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.51  E-value=8.8e-06  Score=69.88  Aligned_cols=146  Identities=19%  Similarity=0.265  Sum_probs=104.2

Q ss_pred             hhHHHHhHHhcCCCH--HHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 023063           43 TNMISYLTTQLHMPL--TKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPC  120 (288)
Q Consensus        43 ~~l~~yl~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~  120 (288)
                      ...+.+.. +.+.+.  ...++......+...++.++.|.++||+ |||+.+..+.....++.+...+..          
T Consensus        23 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~----------   90 (338)
T COG0477          23 PALPLLLS-TLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAP----------   90 (338)
T ss_pred             HHHHHHHH-HcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCc----------
Confidence            33444443 444444  4778888888888888889999999999 999888888766555544444433          


Q ss_pred             CCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCC-CChhhhhhhhhHHHHHHH-HHHHHHHHHHHhHhh
Q 023063          121 EGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDE-TDPKQATKTWKYFNWYYF-VMGAAILVAVTVLVY  198 (288)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~g~~i~~~~~~~  198 (288)
                               + ...+.+.+.+.+.|++.+...+...++++|.++. .      +|+...+.... ...+|..+++.+++.
T Consensus        91 ---------~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (338)
T COG0477          91 ---------N-VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEAT------ERGLAVGLVTLGAGALGLALGPLLAGL  154 (338)
T ss_pred             ---------c-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchh------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     1 1466777778888999998889999999999987 3      58888887777 577788888766665


Q ss_pred             eee--ccchhhhhhHhHHHH
Q 023063          199 IQD--NIGWGWGLGIPTFAM  216 (288)
Q Consensus       199 l~~--~~g~~~~f~~~~~~~  216 (288)
                      +..  ..+|+..|.+.....
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~  174 (338)
T COG0477         155 LLGALLWGWRAAFLLAALLG  174 (338)
T ss_pred             HHHHHhcchHHHHHHHHHHH
Confidence            443  356777555444433

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.48  E-value=3.6e-06  Score=79.00  Aligned_cols=168  Identities=18%  Similarity=0.140  Sum_probs=114.5

Q ss_pred             HHHHHHHHhHHhhh---hhHHHHhHHhcCCCHHH-HHHHHHHH----HHHHhhhHHHHHHHHHhccchhHHHHHHHHHHH
Q 023063           29 SNEVCEKLAVVGFN---TNMISYLTTQLHMPLTK-AANTLTNF----GGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ  100 (288)
Q Consensus        29 ~~~~~~~~~~~~~~---~~l~~yl~~~~~~~~~~-~~~~~~~~----~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~  100 (288)
                      ...+...++++...   .+...+....++.+... .+......    .+...+..++.|.++||+ |||..+.+......
T Consensus        25 ~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~~~  103 (463)
T KOG2816|consen   25 PLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLPLFGTI  103 (463)
T ss_pred             HHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHHHHHHH
Confidence            33444444444333   55555665544443222 22222222    467778899999999999 99999998887777


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 023063          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (288)
Q Consensus       101 i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (288)
                      +..+...+..                        +++++ ..-..-+.+...+...++++|....+      .|...++.
T Consensus       104 l~~~~~~~~~------------------------~~~~~-~~~l~g~~~~~~s~~~a~vadis~~~------~R~~~~gl  152 (463)
T KOG2816|consen  104 LPALCLLFQG------------------------YWFFL-LLGLSGGFSAIFSVGFAYVADISSEE------ERSSSIGL  152 (463)
T ss_pred             HhHHHHHHHH------------------------HHHhh-hcccccchhhhhhhhhhheeeccchh------HHHHHHHH
Confidence            7666555422                        22222 11112233445677788999998887      69999999


Q ss_pred             HHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHHhcc
Q 023063          181 YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYP  228 (288)
Q Consensus       181 ~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~~~  228 (288)
                      .+.....+..++|.+++.+....|.-..|.+..+..++..+......+
T Consensus       153 l~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~  200 (463)
T KOG2816|consen  153 LSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLP  200 (463)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccc
Confidence            999999999999999999988889988999988888777765555544

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.47  E-value=9e-06  Score=74.06  Aligned_cols=141  Identities=16%  Similarity=0.089  Sum_probs=97.2

Q ss_pred             HHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccc-----hhH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCc
Q 023063           50 TTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAG-----RFW-TITIASIIYQIGMICLTISAILPQLRPPPCEGE  123 (288)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~G-----rr~-~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~  123 (288)
                      ..+++++..-.+..+........ ..+..|+.||++ +     ||- -+..|..+...+..+...+...-.-     ..+
T Consensus         7 IvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~-----~~~   79 (403)
T PF03209_consen    7 IVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAE-----SGQ   79 (403)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcc-----ccc
Confidence            35788888888888877776664 689999999998 7     554 4455566666665555543311000     000


Q ss_pred             ccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhheeecc
Q 023063          124 QVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNI  203 (288)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~  203 (288)
                      +. ..+.........+++.+.|+|.+...+...++++|..|++      +|++..++.+...-+|..++..+.+.+.+.+
T Consensus        80 ~~-~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~------~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~  152 (403)
T PF03209_consen   80 QS-SGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEE------RRPRVVAIVWVMLIVGIIVSAIVFGRLLDPF  152 (403)
T ss_pred             cc-ccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHh------hhhhhHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            00 0111112233445566778888888889999999999988      7999999999999999999999998776665


Q ss_pred             c
Q 023063          204 G  204 (288)
Q Consensus       204 g  204 (288)
                      .
T Consensus       153 s  153 (403)
T PF03209_consen  153 S  153 (403)
T ss_pred             C
Confidence            4

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.45  E-value=7.7e-06  Score=77.96  Aligned_cols=178  Identities=14%  Similarity=0.036  Sum_probs=111.2

Q ss_pred             HHHHHHhHHhhhhhHHHHhHH--hcCCCH------HHHHHHHHHHHHHHhhhHHHH----HHHHHhccchhHHHHHHHHH
Q 023063           31 EVCEKLAVVGFNTNMISYLTT--QLHMPL------TKAANTLTNFGGTGSLTPLIG----AFVADAYAGRFWTITIASII   98 (288)
Q Consensus        31 ~~~~~~~~~~~~~~l~~yl~~--~~~~~~------~~~~~~~~~~~~~~~i~~~~~----G~laDr~~Grr~~i~~~~~l   98 (288)
                      .+.....+|.+...++.++..  ..+.+.      ...+++.+...+...+..++.    +++.||. +..+.+.+|+++
T Consensus       281 ~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~~l  359 (500)
T PRK09584        281 LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGMVL  359 (500)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHHHH
Confidence            334455666666666666542  111111      113334444444444555555    5556665 667888899999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHH
Q 023063           99 YQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  178 (288)
Q Consensus        99 ~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (288)
                      ..++.+.+......+.             .....+.+++....++.++|..+..|...+++.+..|++      .||+.+
T Consensus       360 ~~l~f~~l~~~~~~~~-------------~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~------~rg~~~  420 (500)
T PRK09584        360 CSGAFLVLPLGAKFAN-------------DAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQR------LMGFIM  420 (500)
T ss_pred             HHHHHHHHHHHHHhcC-------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHH------HHHHHH
Confidence            9999888776652211             001224567778889999999999999999999999998      799999


Q ss_pred             HHHHHHHHHHHHHHHHhHhhee----------eccchhhhhhHhHHHHHHHHHHHHHhcc
Q 023063          179 NWYYFVMGAAILVAVTVLVYIQ----------DNIGWGWGLGIPTFAMFLSIIAFLIGYP  228 (288)
Q Consensus       179 ~~~~~~~~~g~~i~~~~~~~l~----------~~~g~~~~f~~~~~~~~~~~i~~~~~~~  228 (288)
                      +.+..+..+|+.++..+.....          ...++...|...++..++..++++...+
T Consensus       421 g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~  480 (500)
T PRK09584        421 GSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAP  480 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998888888887766664221          0113556666665554444444444333

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.45  E-value=2.6e-05  Score=73.83  Aligned_cols=173  Identities=14%  Similarity=0.027  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHH-HHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHH
Q 023063           60 AANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIA-SIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILY  138 (288)
Q Consensus        60 ~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~-~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  138 (288)
                      .+...++..+...+..|+-|.++|+. |+||.++.. ..+..++++++.+..                    +++++...
T Consensus        72 ~~~~~sis~l~~all~P~lGa~aD~~-~~Rk~~l~~~~~~~~~~~~~l~~v~--------------------~~~~~~~~  130 (477)
T PF11700_consen   72 WLYANSISGLLQALLAPFLGAIADYG-GRRKRFLLIFTLLGVLATALLWFVS--------------------PGQWWLAL  130 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccc-ccchHHHHHHHHHHHHHHHHHHHhC--------------------cchHHHHH
Confidence            35667788888889999999999998 766655544 455555666555533                    22444444


Q ss_pred             HHHHHHHHhccCcchhhhhhhhcccCCCChhhh--------------------hhhhhHHHHHHHHHHHHHHHHHHhHhh
Q 023063          139 VSLLLAALGSGGIRPCVVAFGADQFDETDPKQA--------------------TKTWKYFNWYYFVMGAAILVAVTVLVY  198 (288)
Q Consensus       139 ~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~g~~i~~~~~~~  198 (288)
                      +..++..++.+.......+++.|..++++....                    ..|++..+.-+..+++|+.+...+.-.
T Consensus       131 ~l~iia~v~~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~  210 (477)
T PF11700_consen  131 VLFIIANVGYEASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLL  210 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHH
Confidence            444555677777778889999999887742000                    012777777777778888877766543


Q ss_pred             eeec--------cchhhhhhHhHHHHHHHHHHHHHhccceee---cCCCCChhhHHHHHHHHHHHh
Q 023063          199 IQDN--------IGWGWGLGIPTFAMFLSIIAFLIGYPLYRN---LDPAGSPFTRLLQVCVAAFRK  253 (288)
Q Consensus       199 l~~~--------~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  253 (288)
                      +...        .+.|..+.+.++..++..+..++..++.+.   .++..+..+.-.+-+++.+|+
T Consensus       211 ~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~  276 (477)
T PF11700_consen  211 LVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKE  276 (477)
T ss_pred             HHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHH
Confidence            3211        123555655555544433333333333222   222223334444555555554

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.44  E-value=4.8e-06  Score=79.14  Aligned_cols=146  Identities=12%  Similarity=0.071  Sum_probs=97.8

Q ss_pred             HHHhHHhhhhhHHHHhHHhcCCCHH----HHHHHHHHHHHHHhhhHHHHHHHHHhccchhH-------HHHHHHHHHHHH
Q 023063           34 EKLAVVGFNTNMISYLTTQLHMPLT----KAANTLTNFGGTGSLTPLIGAFVADAYAGRFW-------TITIASIIYQIG  102 (288)
Q Consensus        34 ~~~~~~~~~~~l~~yl~~~~~~~~~----~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~-------~i~~~~~l~~i~  102 (288)
                      ....+......++.|.++..+.+..    ...++.+...+...+..|+.|++.||. |+|+       -+.+|+++..++
T Consensus       281 f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~~r~~~~~~~~k~~~G~~l~~~~  359 (489)
T PRK10207        281 FYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-GSKGKDLSMPMKFTLGMFLCSLG  359 (489)
T ss_pred             HHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-hhCCCCCCcHHHHHHHHHHHHHH
Confidence            3344444446677777643222110    123333444455667778889999998 9886       367777777777


Q ss_pred             HHHHHHHhh-cCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 023063          103 MICLTISAI-LPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (288)
Q Consensus       103 ~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (288)
                      .+....... ...             .....+.+++....++.++|.++..+...+++.+..|++      .++.+++.+
T Consensus       360 ~~~~~~~~~~~~~-------------~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~------~~g~~~g~~  420 (489)
T PRK10207        360 FLTAAAAGMWFAD-------------AQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQH------LMGFILGMW  420 (489)
T ss_pred             HHHHHHHHHhhcC-------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHH------HHHHHHHHH
Confidence            654432110 000             001224566677788999999999999999999999987      699999999


Q ss_pred             HHHHHHHHHHHHHhHhhe
Q 023063          182 YFVMGAAILVAVTVLVYI  199 (288)
Q Consensus       182 ~~~~~~g~~i~~~~~~~l  199 (288)
                      +...++|+.++..++...
T Consensus       421 ~l~~~ig~~lg~~l~~~~  438 (489)
T PRK10207        421 FLTQAAAFLLGGYVATFT  438 (489)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999988777544

>TIGR00788 fbt folate/biopterin transporter

Probab=98.41  E-value=8.8e-07  Score=83.70  Aligned_cols=148  Identities=8%  Similarity=-0.149  Sum_probs=108.6

Q ss_pred             HHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccc
Q 023063           50 TTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEA  129 (288)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~  129 (288)
                      ++.+|+++.+.|.+..+..++..++..+.+++.+|+ +.|+++.++.++..++.+...+...-+....            
T Consensus       280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~------------  346 (468)
T TIGR00788       280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWNLAF------------  346 (468)
T ss_pred             cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeecccccc------------
Confidence            457899999999999999999999999999999987 9999999999888887755432110000000            


Q ss_pred             ccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhheeeccc-----
Q 023063          130 NKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIG-----  204 (288)
Q Consensus       130 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g-----  204 (288)
                      .....+.+....++.+++.+........++.+..|++      ..++.++......++|..+++.+++.+.+..|     
T Consensus       347 gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~------~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~  420 (468)
T TIGR00788       347 GISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSG------CESSVFALLASILHLGSSVSGFLGVLLMETIGITCDN  420 (468)
T ss_pred             CCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCC------ceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence            0001222333445667777777777889999999988      68999999999999999999999998888777     


Q ss_pred             hhhhhhHhHHHH
Q 023063          205 WGWGLGIPTFAM  216 (288)
Q Consensus       205 ~~~~f~~~~~~~  216 (288)
                      ++.-+.+..+..
T Consensus       421 ~~~~~~~i~i~~  432 (468)
T TIGR00788       421 SNNLWLLILGHS  432 (468)
T ss_pred             ccchHHHHHHHH
Confidence            555444443333

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.36  E-value=5.4e-06  Score=58.19  Aligned_cols=67  Identities=18%  Similarity=0.109  Sum_probs=55.8

Q ss_pred             HHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHH
Q 023063           30 NEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASII   98 (288)
Q Consensus        30 ~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l   98 (288)
                      ..++...+.-.+.++++.|+++ .|+++.+.+.+.++..+...+++++.|+++||+ ||++.++....+
T Consensus         8 ~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~   74 (77)
T PF12832_consen    8 FYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHH
Confidence            3444445555667889999974 899999999999999999999999999999998 998888776544

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.17  E-value=8e-05  Score=70.34  Aligned_cols=205  Identities=10%  Similarity=-0.031  Sum_probs=133.6

Q ss_pred             CCcchHHHHHHHHHHHHHhHHhhhhhHHHHhHH-hcCCCHH------H----HHHHHHHHHHHHhhhHHHHHHHHHhccc
Q 023063           19 GGMITMPFIFSNEVCEKLAVVGFNTNMISYLTT-QLHMPLT------K----AANTLTNFGGTGSLTPLIGAFVADAYAG   87 (288)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~~~~------~----~~~~~~~~~~~~~i~~~~~G~laDr~~G   87 (288)
                      +-++.++.+..+.++.=++++.+..+...|..+ .++-++.      +    ..+....+.+...+..++--++.+++ |
T Consensus       255 ~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~-g  333 (477)
T TIGR01301       255 YLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGW-G  333 (477)
T ss_pred             HCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c
Confidence            345788888889999888888888888888764 4443221      1    12333344444456666677788887 8


Q ss_pred             h-hHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCC
Q 023063           88 R-FWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDET  166 (288)
Q Consensus        88 r-r~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~  166 (288)
                      + |++..++.++..++.+...+....++-.. ..+..+.--.++.+..+..++...+.|+..+.....-.+++++..+++
T Consensus       334 ~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~  412 (477)
T TIGR01301       334 AGKRLWGIVNIILAICLAATVLVTYVAKNSR-YYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNL  412 (477)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHhhhhccc-cccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHcccc
Confidence            5 66668887888888777765442111000 000000000112222455666677889999999999999999999854


Q ss_pred             ChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhheeeccc--hhhhhhHhHHHHHHHHHHHHHhccc
Q 023063          167 DPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIG--WGWGLGIPTFAMFLSIIAFLIGYPL  229 (288)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g--~~~~f~~~~~~~~~~~i~~~~~~~~  229 (288)
                      +.    +.|..++++|.+..+...+..+..|.+.+.+|  -...+.+.++..+++.+..+...|+
T Consensus       413 ~~----~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~  473 (477)
T TIGR01301       413 GA----GQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR  473 (477)
T ss_pred             CC----CCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence            21    57999999999999999998887777555444  3456777777777777666665554

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.14  E-value=8.7e-05  Score=70.93  Aligned_cols=150  Identities=13%  Similarity=0.026  Sum_probs=83.1

Q ss_pred             CcchHHHHHHHHHHH-HHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHH
Q 023063           20 GMITMPFIFSNEVCE-KLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASII   98 (288)
Q Consensus        20 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l   98 (288)
                      .++..........++ ..++..+..+.+..+ +.-|.+... .+...+..+...++..++.++.||+ |||+.++.+...
T Consensus       292 ~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if-~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~~  368 (513)
T KOG0254|consen  292 VRKRLIIGLLLQLFQQLTGINYVFYYSTTIF-KSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAAG  368 (513)
T ss_pred             hHHHHHHHHHHHHHHHHhCCceEEeehHHHH-HhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHHH
Confidence            334444334444444 344444444455554 445665433 4455556667777778889999998 999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHH-HHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhH
Q 023063           99 YQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSL-LLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  177 (288)
Q Consensus        99 ~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (288)
                      +.++.++++..........       .+   .....++..+.. +.......+..++.+.+.+|.+|.+      .|+..
T Consensus       369 m~~~~~~~~~~~~~~~~~~-------~~---~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~------~r~~~  432 (513)
T KOG0254|consen  369 MSICLVILAVVGVFALYYP-------NS---SKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLR------LRSKG  432 (513)
T ss_pred             HHHHHHHHHHHHHHhccCC-------Cc---ccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHh------HHhhh
Confidence            9999988886542111000       00   001112222222 2222222233345556889999998      57776


Q ss_pred             HHHHHHHHHHH
Q 023063          178 FNWYYFVMGAA  188 (288)
Q Consensus       178 ~~~~~~~~~~g  188 (288)
                      .+.-.....+.
T Consensus       433 ~s~~~~~n~~~  443 (513)
T KOG0254|consen  433 ASLAVAVNWLW  443 (513)
T ss_pred             HHHHHHHHHHH
Confidence            66544433333

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.11  E-value=1e-08  Score=95.73  Aligned_cols=184  Identities=15%  Similarity=0.080  Sum_probs=104.9

Q ss_pred             hHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 023063           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (288)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~  102 (288)
                      .....+....+..+..+....+...++.+..+.+..  ........+...++.+++.++.||+ |||+.++.+..+..++
T Consensus       253 ~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~~  329 (451)
T PF00083_consen  253 RLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAIC  329 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-cccccccccccccccc
Confidence            333333444444343333333444444455666655  2223344455666777788999998 9999999998887777


Q ss_pred             HHHHH-HHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhcc-CcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 023063          103 MICLT-ISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSG-GIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (288)
Q Consensus       103 ~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (288)
                      .+.+. .....+.-             +...+.. ..+...+..++.+ +..+....+.+|.+|++      .|++..+.
T Consensus       330 ~~~~~~~~~~~~~~-------------~~~~~~~-~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~------~R~~~~~~  389 (451)
T PF00083_consen  330 SLILGIIFFLGVSS-------------SSWWSIL-SIVFLALFFAFFSLGWGPLPWIYTAELFPTK------VRSTGIGL  389 (451)
T ss_pred             cccccccccccccc-------------ccccccc-cceeeeecccccccccccccccccccccccc------cccccccc
Confidence            76664 11100000             0000111 1111222222222 33455568889999998      59999999


Q ss_pred             HHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHHhccc
Q 023063          181 YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPL  229 (288)
Q Consensus       181 ~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~~~~  229 (288)
                      .+....+++.+++.+...+.+..+-...+.+.+++.++..+..+...|+
T Consensus       390 ~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpE  438 (451)
T PF00083_consen  390 SYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPE  438 (451)
T ss_pred             ccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEee
Confidence            8888889999999888887776663344555444444444444333333

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.00  E-value=3.2e-05  Score=72.55  Aligned_cols=170  Identities=9%  Similarity=-0.040  Sum_probs=123.0

Q ss_pred             HHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHH
Q 023063           28 FSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLT  107 (288)
Q Consensus        28 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~  107 (288)
                      ++..++..++.-.+.+++--+++ +.+-.+..-|........+-.+.-++.+++-.++ |+-+++.+++....+=.+...
T Consensus       377 f~~av~mG~g~~lv~tFLfWHle-d~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~~S  454 (618)
T KOG3762|consen  377 FFVAVVMGAGVGLVFTFLFWHLE-DLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLYYS  454 (618)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHh-hcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHHHH
Confidence            34444455555555555655554 4454444444444444455566777889999998 999999999988887777777


Q ss_pred             HHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHH-HHH
Q 023063          108 ISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF-VMG  186 (288)
Q Consensus       108 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  186 (288)
                      ...                      ++|..+..-+++|+-.+.++.++.+|+++..|++      -+..+.++... ...
T Consensus       455 ~L~----------------------n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~------l~at~Q~l~~g~f~G  506 (618)
T KOG3762|consen  455 YLQ----------------------NPWMVLPIEILQGITHALIWAAIISYASHVAPPG------LRATAQGLLQGIFHG  506 (618)
T ss_pred             Hhc----------------------CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCc------chHHHHHHHHHHhcc
Confidence            666                      6777777778999999999999999999999998      46666665443 356


Q ss_pred             HHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHHhc
Q 023063          187 AAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGY  227 (288)
Q Consensus       187 ~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~~  227 (288)
                      +|-.+|.+++|.+...+|-+..|.+.++..++.++.+....
T Consensus       507 lG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq  547 (618)
T KOG3762|consen  507 LGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQ  547 (618)
T ss_pred             cCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhh
Confidence            77778888888888888888888887777766666555543

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.97  E-value=0.00064  Score=65.68  Aligned_cols=152  Identities=8%  Similarity=0.025  Sum_probs=98.3

Q ss_pred             CCcchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHH---HHHHHHHHHHHHHhhhHHHHHHHHHhccchh-HHHHH
Q 023063           19 GGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLT---KAANTLTNFGGTGSLTPLIGAFVADAYAGRF-WTITI   94 (288)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr-~~i~~   94 (288)
                      ++.|.+...+++.+...+.||+...+.|......++-+..   ..++......++..++..+.|.+.-+. +|- +.+++
T Consensus       307 ~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~i-r~~Kw~li~  385 (599)
T PF06609_consen  307 KDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKI-RHIKWQLIF  385 (599)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHc-cchhHHHHH
Confidence            3446677777788888888888888888887777766553   566777777777888888889998776 664 45556


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhh
Q 023063           95 ASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKT  174 (288)
Q Consensus        95 ~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~  174 (288)
                      +.+++.++.-.+....                  +++.+  ..+...++.++|.|...........-..|++      ..
T Consensus       386 ~~~~~ta~~Gama~~~------------------~~n~~--~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~------~i  439 (599)
T PF06609_consen  386 GSVLMTAFCGAMAAVR------------------PDNKN--AAIAFLVLAGFGIGGILVPAIVIAQLIVPDE------DI  439 (599)
T ss_pred             HHHHHHHHHHHHHHcc------------------CCCcc--hHHHHHHHHHHhHHHHHHHHHHeeEeeeCch------HH
Confidence            6666555444333222                  12222  2334456777777776555444443344544      57


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhHh
Q 023063          175 WKYFNWYYFVMGAAILVAVTVLV  197 (288)
Q Consensus       175 ~~~~~~~~~~~~~g~~i~~~~~~  197 (288)
                      +.+.+.......+|+.++..+..
T Consensus       440 g~a~gL~~s~R~~GGsIg~aIy~  462 (599)
T PF06609_consen  440 GTATGLTGSIRSIGGSIGYAIYN  462 (599)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHH
Confidence            88887777777777777776643

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.96  E-value=0.00031  Score=56.20  Aligned_cols=110  Identities=13%  Similarity=0.198  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHH
Q 023063           57 LTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAI  136 (288)
Q Consensus        57 ~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  136 (288)
                      +........+......+++++...+.+++ |.|++++++.+.+.+-.......                       +.+.
T Consensus        36 ~~~G~~slai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~~~~~-----------------------~~~~   91 (156)
T PF05978_consen   36 AGLGYYSLAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIASFFYP-----------------------NSYT   91 (156)
T ss_pred             ccccHHHHHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHhh-----------------------hHHH
Confidence            33334445566677778888888899997 99999999998777655443321                       4567


Q ss_pred             HHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhH
Q 023063          137 LYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVL  196 (288)
Q Consensus       137 ~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~  196 (288)
                      ++.+-++.|+|.+..+.....++.+..+++      .+++-.+++....+.+..+|.++.
T Consensus        92 l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~------~~~~~~~ifw~i~~~s~i~G~~~~  145 (156)
T PF05978_consen   92 LYPASALLGFGAALLWTAQGTYLTSYSTEE------TIGRNTGIFWAIFQSSLIFGNLFL  145 (156)
T ss_pred             HHHHHHHHhhhhHHhhHhhhHHHHHcCCHH------HHhhHHHHHHHHHHHHHHHHHHHH
Confidence            788888999999999999999999877665      577777776666666666555443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.95  E-value=0.00099  Score=62.80  Aligned_cols=167  Identities=8%  Similarity=0.008  Sum_probs=95.1

Q ss_pred             cchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCC-----CHHHHHHHHHHHHHHHhhh-HHHHHHHHHhccchhHHHHH
Q 023063           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHM-----PLTKAANTLTNFGGTGSLT-PLIGAFVADAYAGRFWTITI   94 (288)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~-----~~~~~~~~~~~~~~~~~i~-~~~~G~laDr~~Grr~~i~~   94 (288)
                      +++++.+.+..||..+.|+...+     +++.+.+     +.....++-+...+.+.+. .++.+++++|+ +|++.+.+
T Consensus         6 ~~k~~~~~l~fF~il~~Y~iLR~-----lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~~   79 (472)
T TIGR00769         6 LKKFLPLFLMFFCILFNYTILRD-----TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFYT   79 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-----hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHHH
Confidence            45566566666666666654433     3444444     3345555655554544444 78899999998 99998888


Q ss_pred             HHHHHHHHHHHHHHHhhcCC--CCCCCCCCcccc-cccccc-------hHHHHHHHHHHHHHhccCcch-hhhhhhhccc
Q 023063           95 ASIIYQIGMICLTISAILPQ--LRPPPCEGEQVC-QEANKG-------QVAILYVSLLLAALGSGGIRP-CVVAFGADQF  163 (288)
Q Consensus        95 ~~~l~~i~~~~~~~~~~~p~--~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~l~g~g~g~~~~-~~~~~~~~~~  163 (288)
                      ....+..-.+++.+.. +|.  ..++.-.-+... ..+.+.       +.|...+..+...+-.....+ .-++++.|.+
T Consensus        80 ~~~~F~~~f~lF~~vl-~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~  158 (472)
T TIGR00769        80 VISPFLGFFALFAFVI-YPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQIT  158 (472)
T ss_pred             HHHHHHHHHHHHHHHH-hcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            7776666666655543 222  111000000000 000000       011111111111111112222 5688999999


Q ss_pred             CCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhhee
Q 023063          164 DETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQ  200 (288)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~  200 (288)
                      ..+      +-.|.++.+..+.|+|..+++.+..++.
T Consensus       159 t~~------qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       159 TID------EAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             CHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887      6899999999999999999998887765

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.93  E-value=1.5e-05  Score=73.40  Aligned_cols=179  Identities=16%  Similarity=0.071  Sum_probs=119.1

Q ss_pred             hHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHH--------HHHHHHHHHHh-hhHHHHHHHHHhccchhHHHH
Q 023063           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAA--------NTLTNFGGTGS-LTPLIGAFVADAYAGRFWTIT   93 (288)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~--------~~~~~~~~~~~-i~~~~~G~laDr~~Grr~~i~   93 (288)
                      .++.....-|+..+++|+...+...-++ ..|+.+++..        ....+...+.. .+-.++..+.|++ |||+..+
T Consensus       305 ~Llgt~~~WFllDiafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-GRk~iq~  382 (538)
T KOG0252|consen  305 HLLGTAGTWFLLDIAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-GRKYIQL  382 (538)
T ss_pred             HHHHHHHHHHhhhhhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-hhHHHHH
Confidence            3444445556667777777665555444 3454333222        22223333333 3666778889998 9999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhh
Q 023063           94 IASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATK  173 (288)
Q Consensus        94 ~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  173 (288)
                      .+..++.+..+.+....+-  .            . +  ....+....+.+.++.-+.+.....+.+|.||++      .
T Consensus       383 ~GF~~~~i~~~~~~~~y~~--~------------~-~--~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPar------v  439 (538)
T KOG0252|consen  383 MGFFIMTIFFFVIAGPYNQ--L------------E-N--TIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPAR------V  439 (538)
T ss_pred             hhHHHHHHHHHHHcCCccc--c------------c-c--cCceeehHHHHHHHHhcCCCceeEEeehhhchHH------H
Confidence            9999888877666654310  0            0 1  1222222233445666667777788889999998      6


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhHhheee-----ccchhhhhhHhHHHHHHHHHHHHHh
Q 023063          174 TWKYFNWYYFVMGAAILVAVTVLVYIQD-----NIGWGWGLGIPTFAMFLSIIAFLIG  226 (288)
Q Consensus       174 ~~~~~~~~~~~~~~g~~i~~~~~~~l~~-----~~g~~~~f~~~~~~~~~~~i~~~~~  226 (288)
                      |+...++.....-+|+.++.....++.+     ..|.+..+++.+.+..++.+..++.
T Consensus       440 R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~  497 (538)
T KOG0252|consen  440 RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLI  497 (538)
T ss_pred             hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEe
Confidence            9999999999999999999999999888     6778888888887776666554443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.91  E-value=0.00038  Score=63.77  Aligned_cols=128  Identities=13%  Similarity=-0.049  Sum_probs=87.2

Q ss_pred             hhhHHHHhHHhcCC---CHH----HHHHHHHHHHHHHhhhHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHHHhhcC
Q 023063           42 NTNMISYLTTQLHM---PLT----KAANTLTNFGGTGSLTPLIGAFVADAYAGR-FWTITIASIIYQIGMICLTISAILP  113 (288)
Q Consensus        42 ~~~l~~yl~~~~~~---~~~----~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr-r~~i~~~~~l~~i~~~~~~~~~~~p  113 (288)
                      +.++|.|+++..+.   ++.    -.+...++..+...+..|+-|-++|.. |+ |+.+-+..++.++.++.++...   
T Consensus        35 t~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L~~i~---  110 (438)
T COG2270          35 TFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLLWFIP---  110 (438)
T ss_pred             eehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHhC---
Confidence            45678888876543   332    335566777778888889999999998 75 5566666677777777776655   


Q ss_pred             CCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHH
Q 023063          114 QLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAV  193 (288)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~  193 (288)
                                      +...++...+..++..++....+....+++.+..+++      +.++..+.-+-...+|+.+.-
T Consensus       111 ----------------~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~------~~~riS~lg~~~gylgs~i~l  168 (438)
T COG2270         111 ----------------PGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKD------NMGRISGLGWALGYLGSVILL  168 (438)
T ss_pred             ----------------CCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCcc------ccCcccccccccccccchHHH
Confidence                            2235555566667788999888889999999998886      355555444444556665544


Q ss_pred             Hh
Q 023063          194 TV  195 (288)
Q Consensus       194 ~~  195 (288)
                      ++
T Consensus       169 i~  170 (438)
T COG2270         169 IF  170 (438)
T ss_pred             HH
Confidence            44

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=97.90  E-value=2.7e-05  Score=71.68  Aligned_cols=167  Identities=13%  Similarity=0.110  Sum_probs=118.2

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhc---cchhHHHHH-HHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAY---AGRFWTITI-ASI   97 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~---~Grr~~i~~-~~~   97 (288)
                      +.+..+..+.+...+++..=.++++.|++ ..|.+.+-.+.+....-+.+.+.+|+.|..+||.   +||||-.+. +..
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~  110 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL  110 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence            55666666677777887777889999997 5799999888888888889999999999999965   588775544 455


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhH
Q 023063           98 IYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  177 (288)
Q Consensus        98 l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (288)
                      ...++.++...+..+-...   |++...|  ...-...++.++..+.=+.........-++.+|....++     +..++
T Consensus       111 ~i~~~l~Lig~aaDig~~l---gd~~~~~--~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~-----~~~~A  180 (498)
T KOG0637|consen  111 LIAVSLFLIGYAADIGLLL---GDNERKP--VKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDA-----KKTRA  180 (498)
T ss_pred             HHHHHHhhhhhHhhhhHHh---cCCcccc--cchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChh-----hhhcc
Confidence            6666666655544221110   1111111  111245667777778888888888899999999987764     23337


Q ss_pred             HHHHHHHHHHHHHHHHHhHhhe
Q 023063          178 FNWYYFVMGAAILVAVTVLVYI  199 (288)
Q Consensus       178 ~~~~~~~~~~g~~i~~~~~~~l  199 (288)
                      .+++.....+|+.+++..++++
T Consensus       181 ns~f~~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  181 NSVFSFFMAVGNVLGYALGSYL  202 (498)
T ss_pred             chhHHHHHHhcceeeeeccccc
Confidence            8888888999999988877654

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.86  E-value=0.00032  Score=68.86  Aligned_cols=83  Identities=18%  Similarity=0.209  Sum_probs=68.5

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHH-HHhhhHHHHHHHHHhccc--hhHHHHHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGG-TGSLTPLIGAFVADAYAG--RFWTITIASII   98 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~G~laDr~~G--rr~~i~~~~~l   98 (288)
                      +.++...+..++....++++..++|.|+++++|+++.+++++.....+ +..++.+++|++.||+ +  .|+.+.+++++
T Consensus       330 ~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~-~~~~~~~~~~~~~~  408 (633)
T TIGR00805       330 PIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKF-KLNVKKAAYFAICL  408 (633)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeee-cccHHHHHHHHHHH
Confidence            456667778888899999999999999999999999999999887665 5678999999999998 7  55777777766


Q ss_pred             HHHHHHH
Q 023063           99 YQIGMIC  105 (288)
Q Consensus        99 ~~i~~~~  105 (288)
                      .+++.++
T Consensus       409 ~~~~~~~  415 (633)
T TIGR00805       409 STLSYLL  415 (633)
T ss_pred             HHHHHHH
Confidence            6666544

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PTZ00207 hypothetical protein; Provisional

Probab=97.86  E-value=0.00023  Score=68.84  Aligned_cols=174  Identities=13%  Similarity=0.043  Sum_probs=114.9

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhc-CC-CHHHHHH-HHHHHHHHHhhhHHHHHHHHHhccchhH--------
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQL-HM-PLTKAAN-TLTNFGGTGSLTPLIGAFVADAYAGRFW--------   90 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~-~~-~~~~~~~-~~~~~~~~~~i~~~~~G~laDr~~Grr~--------   90 (288)
                      ..+|+++...+|..-+-..+..|+ .++-+.+ |. ...+... .++...+..++|.+.+|.++... -||+        
T Consensus       353 ~d~Wll~~~~~cg~g~gl~~~~N~-~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~-~~~~~~~r~prt  430 (591)
T PTZ00207        353 ARLWCLLWSIFCCVGAHFVIIFNA-RFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWS-QKRRAEDRVPIT  430 (591)
T ss_pred             hhHHHHHHHHHHhhCchheeeecH-HHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHH-Hhhccccccchh
Confidence            578888877777655444443333 4555666 66 2232222 78889999999999999987322 3332        


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhh
Q 023063           91 TITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQ  170 (288)
Q Consensus        91 ~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~  170 (288)
                      ..+....++.++.+++++..                      ....++++.++.|++.|..++...+..+|.|. +    
T Consensus       431 ~~l~~~~~~~~~~lll~~~~----------------------p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k----  483 (591)
T PTZ00207        431 IALFIPSVCIITMLTLFLTL----------------------PKAALPLPYFIAAFANGFMAATIALVTRTIFA-K----  483 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHC----------------------CccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-c----
Confidence            22222233555555555543                      12467888999999999999999999999999 5    


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHH-HHhHhheeecc----------c---hhhhhhHhHHHHHHHHHHHHHh
Q 023063          171 ATKTWKYFNWYYFVMGAAILVA-VTVLVYIQDNI----------G---WGWGLGIPTFAMFLSIIAFLIG  226 (288)
Q Consensus       171 ~~~~~~~~~~~~~~~~~g~~i~-~~~~~~l~~~~----------g---~~~~f~~~~~~~~~~~i~~~~~  226 (288)
                        ..|+-++....+..+|+.+- ..+.|.+.+.-          |   ++.+|.+.+++..++.+.-...
T Consensus       484 --~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l  551 (591)
T PTZ00207        484 --DPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYV  551 (591)
T ss_pred             --chHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhhe
Confidence              38888888888888888775 34455543321          2   6677877777666666554443

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.85  E-value=8.7e-07  Score=76.79  Aligned_cols=134  Identities=12%  Similarity=0.139  Sum_probs=108.7

Q ss_pred             HHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcc
Q 023063           45 MISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQ  124 (288)
Q Consensus        45 l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~  124 (288)
                      +-++.+.+.+.+.++..++.++++.-..+.+.++|++.||.+|-|+..++-+.+..+|-+.++.-..             
T Consensus        66 lq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi-------------  132 (459)
T KOG4686|consen   66 LQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGI-------------  132 (459)
T ss_pred             hhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchH-------------
Confidence            4456666667777788888899999999999999999999999998777777777788877764331             


Q ss_pred             cccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhheeecc
Q 023063          125 VCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNI  203 (288)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~  203 (288)
                            ....|.+.++|++.|+|.-......+.|..-+|..+      +.+.+++.......+|+.+-..+.+++.+..
T Consensus       133 ------~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGK------ELn~vfGlqlSvAR~GstvNf~lm~~ly~~~  199 (459)
T KOG4686|consen  133 ------SHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGK------ELNFVFGLQLSVARLGSTVNFLLMPFLYDTM  199 (459)
T ss_pred             ------HHHHHHHHhhheeeccCchhhhhhhcceeEEEecCc------cccchhhHHHHHHHhhceeeeeecHHHHHHH
Confidence                  116788999999999999988888899999999887      6999999988888888887776777665543

>TIGR01272 gluP glucose/galactose transporter

Probab=97.64  E-value=0.00015  Score=64.82  Aligned_cols=87  Identities=9%  Similarity=-0.136  Sum_probs=70.3

Q ss_pred             hHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhheeec----------
Q 023063          133 QVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN----------  202 (288)
Q Consensus       133 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~----------  202 (288)
                      ++..+.++.++.|.|.+...+..++++++..+++      ++++..++.+....+|..++|.+++.+...          
T Consensus         9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~------~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~   82 (310)
T TIGR01272         9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIE------TAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVA   82 (310)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcc------hHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhh
Confidence            6788899999999999999999999999999887      588889999999999999999999866522          


Q ss_pred             ------cchhhhhhHhHHHHHHHHHHHHH
Q 023063          203 ------IGWGWGLGIPTFAMFLSIIAFLI  225 (288)
Q Consensus       203 ------~g~~~~f~~~~~~~~~~~i~~~~  225 (288)
                            ..|+.+|++.+++.++..+.+..
T Consensus        83 ~~~~~~~~~~~~yl~ia~~~~~~~i~~~~  111 (310)
T TIGR01272        83 TANAEAAKVHTPYLLLAGALAVLAIIFAF  111 (310)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  35788887665555444444333

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.57  E-value=0.00049  Score=63.49  Aligned_cols=157  Identities=14%  Similarity=0.054  Sum_probs=94.8

Q ss_pred             hcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccc
Q 023063           52 QLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANK  131 (288)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  131 (288)
                      .-|++...+|.+.....+.+.++..+.|.++||.-.-|.++++......++.+.+......+.                 
T Consensus       295 ~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~-----------------  357 (480)
T KOG2563|consen  295 PSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLG-----------------  357 (480)
T ss_pred             cccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCC-----------------
Confidence            457888899999999999999999999999999833345555555555555433222221111                 


Q ss_pred             chHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhheeeccc----hhh
Q 023063          132 GQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIG----WGW  207 (288)
Q Consensus       132 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g----~~~  207 (288)
                       ..+.++....+.|+...+..|+-.-+..|..-+..      -+...|..+...++-+.+-..+.+...+..+    +..
T Consensus       358 -~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~------E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~  430 (480)
T KOG2563|consen  358 -DSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVA------EGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFP  430 (480)
T ss_pred             -ceEehhhhHHHHHHhhcCCCCcceeeeeeeccccC------CcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCcc
Confidence             23344555566677777777777777777664432      2333444445555555555556666555555    333


Q ss_pred             hhhHhHHHHHHHHHHHHHhccceee
Q 023063          208 GLGIPTFAMFLSIIAFLIGYPLYRN  232 (288)
Q Consensus       208 ~f~~~~~~~~~~~i~~~~~~~~~~~  232 (288)
                      .-+.......+.+++..+.++.+++
T Consensus       431 ~~i~~~~~~~l~~~lva~~r~~y~R  455 (480)
T KOG2563|consen  431 ANIFLTVSALLGAILVAFFRPDYRR  455 (480)
T ss_pred             chhHhHHHHHHHHHHHhhhhhhHHh
Confidence            3444445555555666666655433

>PRK03612 spermidine synthase; Provisional

Probab=97.56  E-value=0.012  Score=56.37  Aligned_cols=156  Identities=10%  Similarity=-0.015  Sum_probs=84.2

Q ss_pred             HHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHH-HHHHHHHHHHHHH-HH
Q 023063           29 SNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWT-ITIASIIYQIGMI-CL  106 (288)
Q Consensus        29 ~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~-i~~~~~l~~i~~~-~~  106 (288)
                      .+.++..++.-..-....-.+...+|.+....+.+++++..+..+|..++|+++++. -|+.. +.++..+....+. ++
T Consensus        21 ~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~~~~e~~i~l~~~~~~~ll   99 (521)
T PRK03612         21 AAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGFVAVELLLALLGGLSALIL   99 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455444555555666667889999999999999999999999988887544 22221 1111111111111 11


Q ss_pred             HHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHH
Q 023063          107 TISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMG  186 (288)
Q Consensus       107 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (288)
                      .....+                 .......++...++.++..|+..|....+..+....       +.++..+-.|....
T Consensus       100 ~~~~~~-----------------~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~~-------~~g~~~g~ly~~nt  155 (521)
T PRK03612        100 YAAFAF-----------------QGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRDQ-------HLGHNVATVLAADY  155 (521)
T ss_pred             HHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------chhhhhhhhHhHHh
Confidence            111100                 000111222333445666676666655544432221       24555667777788


Q ss_pred             HHHHHHHHhHhhe-eeccchhhhh
Q 023063          187 AAILVAVTVLVYI-QDNIGWGWGL  209 (288)
Q Consensus       187 ~g~~i~~~~~~~l-~~~~g~~~~f  209 (288)
                      +|+.+|.++.+++ ....|-....
T Consensus       156 lGa~~G~l~~~~vLlp~lG~~~t~  179 (521)
T PRK03612        156 LGALVGGLAFPFLLLPRLGLIRTA  179 (521)
T ss_pred             HHHHHHHHHHHHHHHHhcchHHHH
Confidence            8888888877743 4456644333

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.51  E-value=0.0074  Score=57.67  Aligned_cols=121  Identities=8%  Similarity=0.011  Sum_probs=82.1

Q ss_pred             HhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccc
Q 023063           51 TQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEAN  130 (288)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  130 (288)
                      ..+|.+......+...   .........+.+.|+. |||.....+..+..++.+......                   .
T Consensus       346 ~~lg~~~~~~~~~~~~---~~~p~~~~~~~~~~~~-gR~~~~~~~~~~~~~~~~~~~~~~-------------------~  402 (521)
T KOG0255|consen  346 SGLGGNIYLNFTLSGL---VELPAYFRNGLLLPEF-GRRPPLFLSLFLAGIGLLLFGWLP-------------------D  402 (521)
T ss_pred             hhcCchHHHHHHHHHH---HHhhHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHhh-------------------c
Confidence            3455544443333322   4444555568899998 999999999999999888887755                   1


Q ss_pred             cchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhhee
Q 023063          131 KGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQ  200 (288)
Q Consensus       131 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~  200 (288)
                      ....++..+...+...+.+........+.+|.+|+.      .|..+.+.......+|++++|.+.....
T Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~------~r~~~~~~~~~~~~~~~i~ap~~~~~~~  466 (521)
T KOG0255|consen  403 DLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTV------VRNTAVGAISAAARLGSILAPLFPLLLR  466 (521)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            111112233333334444455556688999999998      6999999999999999999998765443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.47  E-value=0.0074  Score=55.72  Aligned_cols=155  Identities=11%  Similarity=0.035  Sum_probs=101.5

Q ss_pred             hhhHHHHhHHh-cCCCHHHHHH-HHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 023063           42 NTNMISYLTTQ-LHMPLTKAAN-TLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPP  119 (288)
Q Consensus        42 ~~~l~~yl~~~-~~~~~~~~~~-~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~  119 (288)
                      -+++..|+.+. .|++..+... +.-+..-......++...+.|.. |-|++++++.+...+...++....         
T Consensus        23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~~---------   92 (412)
T PF01770_consen   23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFGT---------   92 (412)
T ss_pred             CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHC---------
Confidence            37788999887 8999998764 33344445556667788999998 999999999888777777766655         


Q ss_pred             CCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhhe
Q 023063          120 CEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYI  199 (288)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l  199 (288)
                                   +...+-+.-++.|++.+. .....+|+--..|++      +.-++.+....+.-+|..++.+++-.+
T Consensus        93 -------------sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~------~yq~vts~~raa~l~g~~~s~~lgQll  152 (412)
T PF01770_consen   93 -------------SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKE------HYQKVTSYTRAATLVGRFISSLLGQLL  152 (412)
T ss_pred             -------------cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         556666666666666553 233344444444443      566677766666666666666665544


Q ss_pred             ee--ccchhhhhhHhHHHHHHHHHHHHHh
Q 023063          200 QD--NIGWGWGLGIPTFAMFLSIIAFLIG  226 (288)
Q Consensus       200 ~~--~~g~~~~f~~~~~~~~~~~i~~~~~  226 (288)
                      ..  ...+.....+......++++..++.
T Consensus       153 vs~~~~sy~~L~~isl~~~~~a~~~~~fL  181 (412)
T PF01770_consen  153 VSFGGVSYFQLNYISLASVSLALLIALFL  181 (412)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence            33  3345666667766666666554443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=97.45  E-value=0.0023  Score=45.51  Aligned_cols=73  Identities=4%  Similarity=0.024  Sum_probs=61.3

Q ss_pred             HhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHh
Q 023063           36 LAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISA  110 (288)
Q Consensus        36 ~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~  110 (288)
                      ++-+.+++.+ +.++++.++|..+++++.+...+++.++.+...++.++. .+++.+..+.++..+.++.+.+..
T Consensus         6 igRFayTplL-P~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~~   78 (85)
T PF06779_consen    6 IGRFAYTPLL-PLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALTH   78 (85)
T ss_pred             hHHHHHHhHh-HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444455544 566778899999999999999999999999999999987 888999999999888888888765

Note that many members are hypothetical proteins.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.44  E-value=0.002  Score=60.78  Aligned_cols=128  Identities=13%  Similarity=0.158  Sum_probs=104.7

Q ss_pred             hHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCc
Q 023063           44 NMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGE  123 (288)
Q Consensus        44 ~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~  123 (288)
                      .++.|+...++|+..+.+...+.......++..+...+--+.+|-|+.+.+|+..-.+.....++..             
T Consensus       263 ~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~-------------  329 (463)
T KOG2816|consen  263 VLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFAT-------------  329 (463)
T ss_pred             EEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhc-------------
Confidence            4467888899999999999999999999999998874444445999999999999999999998877             


Q ss_pred             ccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhhee
Q 023063          124 QVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQ  200 (288)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~  200 (288)
                               +.|.++.+.++.+ ..+...+...++.+.+..++      ++|+.+++......+.+.++|.+-+.+.
T Consensus       330 ---------~~w~~~~~~v~~~-~~~~~~pa~~s~~s~~v~~~------e~g~v~~~is~i~~l~~~~~~~~~~~i~  390 (463)
T KOG2816|consen  330 ---------ETWMMFAAGVVVA-LAGIVFPAIRAFASILVSPE------EQGKVFGIISGIEGLSGVVSPALYGNIF  390 (463)
T ss_pred             ---------cchhhhHHHHHHH-hhcchhHHHHhHHHhhcccc------cccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence                     5666666665544 44566788888888888887      6999999999999999999998877553

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.44  E-value=0.0086  Score=56.94  Aligned_cols=120  Identities=13%  Similarity=0.002  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHhccchh-H------HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccc
Q 023063           60 AANTLTNFGGTGSLTPLIGAFVADAYAGRF-W------TITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKG  132 (288)
Q Consensus        60 ~~~~~~~~~~~~~i~~~~~G~laDr~~Grr-~------~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  132 (288)
                      .++..+...+...+..|+.+++=.|. +|| |      =+-+|+++..++.+.+.+......-             ....
T Consensus       310 ~~~~qslNp~~ii~l~P~~a~lw~~l-~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~-------------~~~~  375 (493)
T PRK15462        310 TAMFQSINAFAVMLCGVFLAWVVKES-VAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAM-------------YGHS  375 (493)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHH-hcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCC-------------CCCc
Confidence            44555556666666677777775554 332 1      2566777888887777665421110             0113


Q ss_pred             hHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHH-HHHHHHHHHHhHhhe
Q 023063          133 QVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV-MGAAILVAVTVLVYI  199 (288)
Q Consensus       133 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~i~~~~~~~l  199 (288)
                      +.+++++..++.++|.-+..|...+++++..|++      -++..++.++.. ..+|..++..+.+..
T Consensus       376 s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~------~~g~~mg~w~l~~~~~~~~~~g~~~~~~  437 (493)
T PRK15462        376 SLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPG------VTGVLTGIYMLLSGAIANYLAGVIADQT  437 (493)
T ss_pred             CHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5666778888899999999999999999999988      699999988774 367777777666654

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.40  E-value=0.0029  Score=57.40  Aligned_cols=151  Identities=12%  Similarity=0.112  Sum_probs=107.7

Q ss_pred             hHHHHHHHHHHHHHhHHhhhhhHHHHh-HHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccch-hHHHHHHHHHHH
Q 023063           23 TMPFIFSNEVCEKLAVVGFNTNMISYL-TTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGR-FWTITIASIIYQ  100 (288)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Gr-r~~i~~~~~l~~  100 (288)
                      .++..+....+.....|....+.+.++ .+.+|+++.|.|-......+.+.+.+..-....||..|. +-.+..++.++.
T Consensus       261 ~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~v  340 (451)
T KOG2615|consen  261 SVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIV  340 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHH
Confidence            455555554444444444445555555 457899999999888888888888888778888887433 334444444444


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 023063          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (288)
Q Consensus       101 i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (288)
                      -..++.....                      ....++++..+..+..+...+++..++....|.+      +||...|+
T Consensus       341 P~~llls~~~----------------------~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~------qrG~~~Gi  392 (451)
T KOG2615|consen  341 PAFLLLSLAR----------------------TPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQS------QRGTLNGI  392 (451)
T ss_pred             HHHHHHhccc----------------------cchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcc------cchHHHHH
Confidence            4444443333                      3456778888888888888899999999988887      69999999


Q ss_pred             HHHHHHHHHHHHHHhHhheee
Q 023063          181 YYFVMGAAILVAVTVLVYIQD  201 (288)
Q Consensus       181 ~~~~~~~g~~i~~~~~~~l~~  201 (288)
                      ......++=++||.+.|.+..
T Consensus       393 ~~Sl~alaRaiGPlv~g~i~~  413 (451)
T KOG2615|consen  393 FRSLGALARAIGPLVSGVIFS  413 (451)
T ss_pred             HHHHHHHHHHhhhhhhheeEE
Confidence            999999999999999987654

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.18  E-value=0.00038  Score=60.26  Aligned_cols=100  Identities=19%  Similarity=0.173  Sum_probs=70.0

Q ss_pred             hhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 023063           42 NTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCE  121 (288)
Q Consensus        42 ~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~  121 (288)
                      +.....|+-+.+++...+.+.+.........+...+.|-|+|+. |||+.-.    .+.+.+++..+..+.|+       
T Consensus        56 QgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracv----tycitYiLsCiTKhSpq-------  123 (454)
T KOG4332|consen   56 QGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACV----TYCITYILSCITKHSPQ-------  123 (454)
T ss_pred             cCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-cccccee----eehHHHHHHHHhhcCCc-------
Confidence            34455677788899999988876666666667778889999998 9999654    44455566666654443       


Q ss_pred             CcccccccccchHHHHHHHHHHHHHhccCcchhhhh-hhhcccCC
Q 023063          122 GEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVA-FGADQFDE  165 (288)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~-~~~~~~~~  165 (288)
                                  +-++.++|++-|+..+...+.--+ +++|.-++
T Consensus       124 ------------YkVLmVGR~LGGiaTsLLFSaFEsWliaEHnek  156 (454)
T KOG4332|consen  124 ------------YKVLMVGRVLGGIATSLLFSAFESWLIAEHNEK  156 (454)
T ss_pred             ------------eEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhc
Confidence                        445778999999888776655544 45565433

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.84  E-value=0.025  Score=53.04  Aligned_cols=104  Identities=11%  Similarity=0.158  Sum_probs=80.0

Q ss_pred             HHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHH
Q 023063           64 LTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLL  143 (288)
Q Consensus        64 ~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  143 (288)
                      ..+......+++++++.+.|+. |.|+.+.++...+.+-.+.+...                       |.+..+++-.+
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~~-----------------------N~y~~yfssal  111 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLFP-----------------------NSYYLYFSSAL  111 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHhc-----------------------chHHHHHHHHH
Confidence            5666777788899999999998 99999999998877766655542                       35667888889


Q ss_pred             HHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHh
Q 023063          144 AALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLV  197 (288)
Q Consensus       144 ~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~  197 (288)
                      .|+|.+..+.....+++|..+++      ...+-.+........+.++|..+..
T Consensus       112 lG~Gaallw~GqG~ylt~~st~~------tie~Nisi~Wai~~~~li~Ggi~l~  159 (461)
T KOG3098|consen  112 LGFGAALLWTGQGGYLTSNSTRE------TIERNISIFWAIGQSSLIIGGIILF  159 (461)
T ss_pred             hhhhHHheecccceehhhcCChh------hHHHHHHHHHHHHHHHHHhhhHhhe
Confidence            99999999999999999988876      4666666655555566655554433

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=96.80  E-value=0.0026  Score=59.79  Aligned_cols=201  Identities=9%  Similarity=0.005  Sum_probs=119.5

Q ss_pred             cCCcchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHH----HHHHhhhHHHHHHHH-HhccchhHHH
Q 023063           18 KGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNF----GGTGSLTPLIGAFVA-DAYAGRFWTI   92 (288)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~G~la-Dr~~Grr~~i   92 (288)
                      +..|+..+.++.+.+..++.+..+.+-.+.+....++++..++-...+..    .+......+..+... -++ .+|+.+
T Consensus       258 ~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i-~~r~~~  336 (488)
T KOG2325|consen  258 KLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKI-DKRRII  336 (488)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhh-ccceee
Confidence            34677888888888888888877666666666667787766654433332    222222222222222 122 345555


Q ss_pred             HHHHHHHHHHHHHHHHHh-----hcCCCC--CCCC--CCcccccccccchHHHHHHHH-HHHHHhccCcchhhhhhhhcc
Q 023063           93 TIASIIYQIGMICLTISA-----ILPQLR--PPPC--EGEQVCQEANKGQVAILYVSL-LLAALGSGGIRPCVVAFGADQ  162 (288)
Q Consensus        93 ~~~~~l~~i~~~~~~~~~-----~~p~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~-~l~g~g~g~~~~~~~~~~~~~  162 (288)
                      +.+.++...........-     .++.+.  ...|  +++.-|+.....+.+.+++.. ++.|.+.-.+.....++-+|+
T Consensus       337 ~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySki  416 (488)
T KOG2325|consen  337 LLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKI  416 (488)
T ss_pred             eehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHHH
Confidence            555433333333222110     000011  1223  245667766666777666664 445666666677788889999


Q ss_pred             cCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHH
Q 023063          163 FDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (288)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~  225 (288)
                      ..+.      ..+...+.+.....++..++|++........|.++.+.+..+..++.......
T Consensus       417 Lgp~------~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~~~  473 (488)
T KOG2325|consen  417 LGPR------DQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALWIV  473 (488)
T ss_pred             hCCc------cccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHHHH
Confidence            9887      47777888888889999999998888777788887666665555544443333

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=96.64  E-value=0.053  Score=51.00  Aligned_cols=147  Identities=16%  Similarity=0.033  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHhccchh-------HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccch
Q 023063           61 ANTLTNFGGTGSLTPLIGAFVADAYAGRF-------WTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQ  133 (288)
Q Consensus        61 ~~~~~~~~~~~~i~~~~~G~laDr~~Grr-------~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  133 (288)
                      .+..+...+...+..|+..++--+. +++       .-+-+++.++..+.+.+......-.            ..++..+
T Consensus       327 ~~fQslNp~~Iii~~pI~a~l~~~l-~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~------------~~~~~~s  393 (498)
T COG3104         327 AWFQSLNPFFIILFSPILAALWTKL-GRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFG------------GPSGLVS  393 (498)
T ss_pred             HHHHhhCHHHHHHHHHHHHHHHhHh-hcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhc------------CCCCCcC
Confidence            3444555555566667777776664 433       2345556666666666655420000            0023457


Q ss_pred             HHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhh------eeeccchhh
Q 023063          134 VAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVY------IQDNIGWGW  207 (288)
Q Consensus       134 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~------l~~~~g~~~  207 (288)
                      .++++.+.+++++|.=+..++..++++...|+.      -.+..++.+......|..++..+.+.      ..+......
T Consensus       394 ~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~------~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~  467 (498)
T COG3104         394 VWWLVLSYVLQSFGELFISPVGLSMVTKLAPPA------LKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGR  467 (498)
T ss_pred             HHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHH------HHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhh
Confidence            888889999999999999999999999999986      57888888888888888877766653      112223445


Q ss_pred             hhhHhHHHHHHHHHHHHHh
Q 023063          208 GLGIPTFAMFLSIIAFLIG  226 (288)
Q Consensus       208 ~f~~~~~~~~~~~i~~~~~  226 (288)
                      .|+..+...++..+.....
T Consensus       468 ~F~~~g~v~i~~~~~~~~~  486 (498)
T COG3104         468 VFGTIGVVAIVIGILLLLL  486 (498)
T ss_pred             hHHHHHHHHHHHHHHHHHh
Confidence            5666655554444443333

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.63  E-value=0.16  Score=47.59  Aligned_cols=136  Identities=12%  Similarity=0.018  Sum_probs=103.3

Q ss_pred             hhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 023063           41 FNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPC  120 (288)
Q Consensus        41 ~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~  120 (288)
                      +-..+..|+..+ |+++...+..-+...+.+..+..+..++.+|+ |.-|+=+++...-.+...+...+...|.-     
T Consensus       277 f~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L~~~v~~~~~~~~-----  349 (432)
T PF06963_consen  277 FGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCLALCVVSFWAPGS-----  349 (432)
T ss_pred             CcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHHHHhcCCC-----
Confidence            345578899876 99999999999999999999999999999998 99998888887766666555554432221     


Q ss_pred             CCccccccc-ccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHh
Q 023063          121 EGEQVCQEA-NKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLV  197 (288)
Q Consensus       121 ~~~~~~~~~-~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~  197 (288)
                              + ...+...++.+.++.=+|.=++-.+...++-|..|++      +||...+..+...++..++...+.-
T Consensus       350 --------~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~------~Rg~v~gvq~sl~~lf~ll~~~~~i  413 (432)
T PF06963_consen  350 --------PFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPES------ERGAVSGVQNSLQSLFELLSFVLTI  413 (432)
T ss_pred             --------CchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHH------HhhHHHHHHHHHHHHHHHHHHHHHh
Confidence                    0 1224555666666666777677778888888888876      7999999998888888888776644

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=96.36  E-value=0.15  Score=46.66  Aligned_cols=162  Identities=14%  Similarity=0.093  Sum_probs=93.7

Q ss_pred             ccCCcchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHH-----hccchhHH
Q 023063           17 QKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVAD-----AYAGRFWT   91 (288)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laD-----r~~Grr~~   91 (288)
                      .++..+.+..++++...+..- ++....+|..++ ..|.|-++.+.....+.=  +-.-+++..+.|     |+ ||||.
T Consensus        26 ~~~d~~~illLl~LYllQGiP-~GL~~~iP~lL~-ak~vSyt~~a~fS~ay~P--~sLKllWaPiVDs~y~k~~-Grrks  100 (510)
T KOG3574|consen   26 LKGDRSSILLLLFLYLLQGIP-LGLIGAIPLLLQ-AKGVSYTSQAIFSFAYWP--FSLKLLWAPIVDSVYSKRF-GRRKS  100 (510)
T ss_pred             hhhhhhhHHHHHHHHHHcCCc-hhHhhhhHHHhc-CCCcchhhhhhhhhhhhH--HHHHHHHHhhhHHHHHHhh-ccccc
Confidence            345667787777777777654 456666676665 568887776654333221  112346777888     76 99997


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhh
Q 023063           92 ITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQA  171 (288)
Q Consensus        92 i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~  171 (288)
                      -++-+ -+.+|.++..++.         |+++--.......+.......+++.-++.+..-..+-...-.+..++     
T Consensus       101 Wvvp~-q~llG~~mllLs~---------~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e-----  165 (510)
T KOG3574|consen  101 WVVPC-QYLLGLFMLLLSY---------LVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRE-----  165 (510)
T ss_pred             eeeeh-HHHHHHHHHHHhh---------CCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHh-----
Confidence            66543 4455666665555         22221111111112233333444555555555555555555556555     


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhHhhe
Q 023063          172 TKTWKYFNWYYFVMGAAILVAVTVLVYI  199 (288)
Q Consensus       172 ~~~~~~~~~~~~~~~~g~~i~~~~~~~l  199 (288)
                       +.|=+......+.+.|.+++..+.-.+
T Consensus       166 -~lgyaST~q~Vg~~~GyfL~~~ifLaL  192 (510)
T KOG3574|consen  166 -NLGYASTCQSVGQTAGYFLGNVVFLAL  192 (510)
T ss_pred             -hcCchhHHHHHHHhhhHHhhcceeeEe
Confidence             577777777778888888887664433

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.24  E-value=0.2  Score=49.58  Aligned_cols=81  Identities=16%  Similarity=0.257  Sum_probs=61.4

Q ss_pred             hHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHH-HHhhhHHHHHHHHHhc-cchhHHHHHHHHHHH
Q 023063           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGG-TGSLTPLIGAFVADAY-AGRFWTITIASIIYQ  100 (288)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~G~laDr~-~Grr~~i~~~~~l~~  100 (288)
                      ......+...++...+-+..+++|-|+.+++|.+.+.+..++....+ +..++..++|++.-|+ +..|.+..+.++...
T Consensus       393 if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~  472 (735)
T KOG3626|consen  393 IFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSV  472 (735)
T ss_pred             hHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHH
Confidence            34455678888999999999999999999999999999998866654 6678888999998887 344555544444433


Q ss_pred             HHH
Q 023063          101 IGM  103 (288)
Q Consensus       101 i~~  103 (288)
                      +..
T Consensus       473 l~l  475 (735)
T KOG3626|consen  473 LSL  475 (735)
T ss_pred             HHH
Confidence            333

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=96.08  E-value=0.014  Score=55.20  Aligned_cols=68  Identities=15%  Similarity=0.160  Sum_probs=52.4

Q ss_pred             HHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHH-HHHHHHHHHH
Q 023063           38 VVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASI-IYQIGMICLT  107 (288)
Q Consensus        38 ~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~-l~~i~~~~~~  107 (288)
                      +-.+.+.++.|.. ++|+++++.+.++...-+...++.|++|.+|||+ -+||-++++.. .....++++.
T Consensus        27 ~g~l~pll~vy~k-QLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~-r~~r~lllgsl~~~v~a~fll~   95 (618)
T KOG3762|consen   27 FGSLFPLLAVYFK-QLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRY-RKRRPLLLGSLLLSVTATFLLV   95 (618)
T ss_pred             ccccchHHHHHHH-HcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHH-HhcCchhHHHHHHHHHHHHhee
Confidence            3345677888886 6999999999999999999999999999999999 66665555554 4444444444

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.02  E-value=0.8  Score=42.92  Aligned_cols=187  Identities=9%  Similarity=-0.083  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHH
Q 023063           24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGM  103 (288)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~  103 (288)
                      .+.+....++.+..-=+...-.+.|+.+.+.-+.--.+.....-.+...++.+..|...||. -|.+++..+.+.--++.
T Consensus         4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn~sv   82 (432)
T PF06963_consen    4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVVQNLSV   82 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHHHHHHH
Confidence            34445555555555444555567788877665666666666666777778888888999998 89888777765333322


Q ss_pred             HH----HHHHhhcCCCCCCCCCCcccccccccchHHHHHHHH-HHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHH
Q 023063          104 IC----LTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSL-LLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  178 (288)
Q Consensus       104 ~~----~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (288)
                      ..    +......+...           ..++.....+++.. ++..+..=+......+.=-|+...-..+.+..+.+.-
T Consensus        83 ~~s~~~~~~l~~~~~~~-----------~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~N  151 (432)
T PF06963_consen   83 AASCALFLLLLSYPSSS-----------SQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMN  151 (432)
T ss_pred             HHHHHHHHHHHhCCccc-----------cccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHH
Confidence            22    22111011100           00011122222222 2222221111122222223333211111122456665


Q ss_pred             HHHHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHH
Q 023063          179 NWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIA  222 (288)
Q Consensus       179 ~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~  222 (288)
                      +...=.=.+.-.++|++.|.+....+......+.++.-+++..+
T Consensus       152 A~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~v  195 (432)
T PF06963_consen  152 ATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFV  195 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence            56555566778899999998888778776666666655555543

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=95.70  E-value=0.0028  Score=61.01  Aligned_cols=174  Identities=12%  Similarity=0.142  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHH-HHhhhHHHHHHHHHhc-cchhHHHHHHHHHHHH
Q 023063           24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGG-TGSLTPLIGAFVADAY-AGRFWTITIASIIYQI  101 (288)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~G~laDr~-~Grr~~i~~~~~l~~i  101 (288)
                      ...+.+...++.+...++.+++|-|++.+|+.++++++++.....+ +..++.+++|++..|+ ++.|+.+.+..+...+
T Consensus       307 f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v  386 (539)
T PF03137_consen  307 FMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIV  386 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHH
Confidence            3345567777888888999999999999999999999998877665 6678899999999987 3345555555444444


Q ss_pred             HHHHHH---HH--hhcC------CC-----CCCCCCCcc----------------cccccccchHHHHHHHHHHHHHhcc
Q 023063          102 GMICLT---IS--AILP------QL-----RPPPCEGEQ----------------VCQEANKGQVAILYVSLLLAALGSG  149 (288)
Q Consensus       102 ~~~~~~---~~--~~~p------~~-----~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~l~g~g~g  149 (288)
                      +.+...   +.  ...|      .+     ....|....                .|...-......+.+..++..+..+
T Consensus       387 ~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~  466 (539)
T PF03137_consen  387 SVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTF  466 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHH
Confidence            433311   11  0000      00     000011011                2322201123444444444444444


Q ss_pred             CcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHH-HHHHHHHHHHhHhheeecc
Q 023063          150 GIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV-MGAAILVAVTVLVYIQDNI  203 (288)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~i~~~~~~~l~~~~  203 (288)
                      ..........-...+++      +|+-+.++.... .-+|..-+|++.|.+.+..
T Consensus       467 ~~~~p~~~i~LR~V~~~------~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t  515 (539)
T PF03137_consen  467 MSQVPSTLITLRCVPPE------QRSFALGVQWLIIRLLGFIPGPIIFGAIIDST  515 (539)
T ss_dssp             -------------------------------------------------------
T ss_pred             hcccchheeeeccCChh------hcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence            44444444555677776      588888886654 5678888999999887753

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.43  E-value=0.99  Score=42.55  Aligned_cols=117  Identities=17%  Similarity=0.109  Sum_probs=71.5

Q ss_pred             HHhhhHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHh
Q 023063           70 TGSLTPLIGAFVADAY--AGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALG  147 (288)
Q Consensus        70 ~~~i~~~~~G~laDr~--~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g  147 (288)
                      +..++..+.+.+++|.  +||++++.++..+..++.++.-+..  |.-.+.+.-++.+-.-..  +..+..+.-++.|++
T Consensus       291 g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~--p~dap~~~t~~~~~~~~~--~~~~~~ii~~l~G~~  366 (461)
T KOG3098|consen  291 GEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSF--PNDAPLRPTDSPPLLFTP--SYYLALIIGFLLGFG  366 (461)
T ss_pred             HHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccc--cccCCCCCCccccccccc--chhHHHHHHHHHhhH
Confidence            3344455555665443  4899999999988888877766543  322211111111111111  233334445678999


Q ss_pred             ccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHh
Q 023063          148 SGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLV  197 (288)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~  197 (288)
                      -+..+.....++++..|.+       |..+++++-....++..++.....
T Consensus       367 D~~~~t~~~~ii~~~~~~~-------~~~~fsi~kfyq~~~s~v~~f~~~  409 (461)
T KOG3098|consen  367 DACFNTQRYVIIALLYPDD-------RAQAFSLFKFYQSVASCVAFFFSP  409 (461)
T ss_pred             HHHHHHHHHHHHHHHhcCc-------hHHHHHHHHHHHHHHHHHHhhhhh
Confidence            9999999999999999653       777777777766666665544433

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=94.72  E-value=0.44  Score=44.61  Aligned_cols=131  Identities=11%  Similarity=0.090  Sum_probs=68.1

Q ss_pred             hcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchh----HHHHHHHHHHHHHH---HHHHHHhhcCCCCCCCCCCcc
Q 023063           52 QLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRF----WTITIASIIYQIGM---ICLTISAILPQLRPPPCEGEQ  124 (288)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr----~~i~~~~~l~~i~~---~~~~~~~~~p~~~~~~~~~~~  124 (288)
                      -.|.+..+..+...+...++.++.++||.++|++ -|+    .+....-+....+.   +.+-+.  .|..         
T Consensus       277 ~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~-~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~--~~~~---------  344 (493)
T KOG1330|consen  277 LIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKL-SRIFPNSGTLRASQLSAALGAPLSIPFLFL--FPAF---------  344 (493)
T ss_pred             HhCCccccchhhhhHHHhhchhhheehHHHHHHH-HHhcccccchhHHHHHHhhhhhHHHHHHHH--HHhh---------
Confidence            3455555666677788889999999999999994 221    12222222222211   111110  0100         


Q ss_pred             cccccccchHHHHHHHHHHHHHhccCc-chhhhhhhhcccCCCChhhhhhhhhHHHHHHHHH-HHHHHHHHHhHhheeec
Q 023063          125 VCQEANKGQVAILYVSLLLAALGSGGI-RPCVVAFGADQFDETDPKQATKTWKYFNWYYFVM-GAAILVAVTVLVYIQDN  202 (288)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~l~g~g~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~i~~~~~~~l~~~  202 (288)
                           ...+.+ +...+++.|.-.... .+....+..|..|++      +|..++++..... .+|..-+|.+.|.+.++
T Consensus       345 -----~~~s~~-~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~------~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~  412 (493)
T KOG1330|consen  345 -----TSSSMI-FGLILFLVGETISWFNWATNNPIFLEVVPPS------RRTTAYALDTVFEHIFGDAASPYIVGILSDK  412 (493)
T ss_pred             -----hhHHHH-HHHHHHHHHHHHHhcccccccceeeEecCcc------cccHHHHHHHHHHHHhccCCCcceehhHHHH
Confidence                 011222 222223333322222 233445567888887      6888888876654 44555555577777665


Q ss_pred             c-chh
Q 023063          203 I-GWG  206 (288)
Q Consensus       203 ~-g~~  206 (288)
                      . ||+
T Consensus       413 l~g~~  417 (493)
T KOG1330|consen  413 LRGYK  417 (493)
T ss_pred             hhCCC
Confidence            3 555

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=94.29  E-value=0.64  Score=41.70  Aligned_cols=148  Identities=11%  Similarity=0.097  Sum_probs=79.1

Q ss_pred             cCCcchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHH
Q 023063           18 KGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASI   97 (288)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~   97 (288)
                      +...|.++.+-...++...+|-+ .-++-.....++|.  ...    .........++++.+.+..++ |-|+++.++..
T Consensus        25 ~~~~knv~i~s~~fl~~f~a~~g-l~nlq~~vn~~lg~--~sl----~~~y~~l~~s~m~~~~~Ir~~-g~K~tm~lav~   96 (390)
T KOG3097|consen   25 LGILKNVLILSIAFLLTFTAYLG-LQNLQTSVNYDLGT--VSL----GALYLSLIDSSMFMPLLIRFL-GTKWTMVLAVF   96 (390)
T ss_pred             cchhhhhhHHHHHHHHHHHHHHH-HHHHHHHHhcCccc--chh----hhhhHHHHHHHHHHHHHHHHH-hhHHHHHHHHH
Confidence            34556676655444444444333 34444443332222  111    122233344555555666665 99999998776


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChh--------
Q 023063           98 IYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPK--------  169 (288)
Q Consensus        98 l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~--------  169 (288)
                      .+.....    .+..|                   .+.-++.+-+..|+|.+..+..-.+|++++-......        
T Consensus        97 ~Y~lyiA----~Nl~p-------------------r~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~~~~q~~~~  153 (390)
T KOG3097|consen   97 PYALYIA----ANLEP-------------------RYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQRGEQAGDG  153 (390)
T ss_pred             HHHHHHH----hhcch-------------------hHHhhccHHHhhccccccccccCcceecHHHHHHHHhhhhhccCc
Confidence            5544322    22112                   3344556667788899988888777776655433211        


Q ss_pred             -hhhhhhhHHHHHHHHHHHHHHHHHHhH
Q 023063          170 -QATKTWKYFNWYYFVMGAAILVAVTVL  196 (288)
Q Consensus       170 -~~~~~~~~~~~~~~~~~~g~~i~~~~~  196 (288)
                       ..+.-+-.+-+++.+...|..++..+.
T Consensus       154 ~~~~ffg~Ffii~~~~qv~gn~issli~  181 (390)
T KOG3097|consen  154 MKVRFFGEFFIIFQCAQVWGNLISSLIM  181 (390)
T ss_pred             eeeeehhHHHHHHHHHHHHHHHHHHHHH
Confidence             011234555566666667766665553

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=94.15  E-value=1.2  Score=41.23  Aligned_cols=127  Identities=17%  Similarity=0.166  Sum_probs=72.3

Q ss_pred             HHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHh
Q 023063           68 GGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALG  147 (288)
Q Consensus        68 ~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g  147 (288)
                      .+-..+.-++.-+..+|+ .-+.-+.++.++..+|.++.+++.                      +.++-.++.++.+++
T Consensus        69 i~P~l~~Kl~aP~fi~~v-~y~~Ri~~~~~l~~~g~l~va~~~----------------------~v~~~l~Gv~las~s  125 (402)
T PF02487_consen   69 ILPSLLVKLIAPFFIHRV-PYWIRILICVALSAAGMLLVAFSP----------------------SVWVRLLGVVLASLS  125 (402)
T ss_pred             HHHHHHHHHHhHhhhhhc-cchHHHHHHHHHHHHHHhheeecc----------------------chhHHHHHHHHHhhh
Confidence            334444455566677776 433334444556666766666544                      566677888888988


Q ss_pred             ccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhheee-ccchhhhhhHhHHHHHHHHHHHHHh
Q 023063          148 SGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQD-NIGWGWGLGIPTFAMFLSIIAFLIG  226 (288)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~-~~g~~~~f~~~~~~~~~~~i~~~~~  226 (288)
                      .|......-++.+ .+++.          ..+.+..+...++.+|+..-..+.. ..+-+..+.+..++.++-++.+++.
T Consensus       126 sg~GE~tfL~lt~-~y~~~----------~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~  194 (402)
T PF02487_consen  126 SGLGEVTFLSLTH-FYGKS----------SLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFL  194 (402)
T ss_pred             hhhhHHHHHHHHH-hcCcc----------ccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence            8887776666543 45543          1344455555566666544333333 2233556666666555555555544


Q ss_pred             cc
Q 023063          227 YP  228 (288)
Q Consensus       227 ~~  228 (288)
                      .+
T Consensus       195 L~  196 (402)
T PF02487_consen  195 LP  196 (402)
T ss_pred             hc
Confidence            43

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=94.02  E-value=5.7  Score=37.69  Aligned_cols=169  Identities=9%  Similarity=-0.031  Sum_probs=94.7

Q ss_pred             CcchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCC---HHHHHHHHHHHHH-HHhhhHHHHHHHHHhccchhHHHHHH
Q 023063           20 GMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMP---LTKAANTLTNFGG-TGSLTPLIGAFVADAYAGRFWTITIA   95 (288)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~---~~~~~~~~~~~~~-~~~i~~~~~G~laDr~~Grr~~i~~~   95 (288)
                      .++.+.-+.+..+|..+.++..     --+++.+.++   +.....+-+.... ++.+..++-+++.+++ .|.++..+-
T Consensus        25 E~~kflpl~Ll~f~I~~ny~~l-----R~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-t~~~vF~~~   98 (509)
T COG3202          25 ELKKFLPLALLFFCILFNYNLL-----RSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-TREKVFYII   98 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----HHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-CHHHHHHHH
Confidence            3456665666655555544322     2234444433   4444555555555 6677888899999998 999998888


Q ss_pred             HHHHHHHHHHHHHHhhcCCC--CCCCCC--Ccccccccccc-------hHHHHHHHHHHHH-HhccCcchhhhhhhhccc
Q 023063           96 SIIYQIGMICLTISAILPQL--RPPPCE--GEQVCQEANKG-------QVAILYVSLLLAA-LGSGGIRPCVVAFGADQF  163 (288)
Q Consensus        96 ~~l~~i~~~~~~~~~~~p~~--~~~~~~--~~~~~~~~~~~-------~~~~~~~~~~l~g-~g~g~~~~~~~~~~~~~~  163 (288)
                      +..+....+++++.. +|.-  .++...  ++..-..|.+-       +.|...+..+..- -|.-...-.-+.+..|++
T Consensus        99 ~~~F~~fF~LFa~Vi-~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeit  177 (509)
T COG3202          99 LGFFLGFFALFAFVI-YPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEIT  177 (509)
T ss_pred             HHHHHHHHHHHHHHH-hccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            877777777777655 4331  111100  00000011000       0011111111111 111111123456778887


Q ss_pred             CCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhheee
Q 023063          164 DETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQD  201 (288)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~  201 (288)
                      ..+      +-.|++..++.+.|++..++..+..++..
T Consensus       178 t~~------eakRFy~lf~l~~ni~lllsg~~~~~~~k  209 (509)
T COG3202         178 TIE------EAKRFYPLFGLGANISLLLSGEVTSWLSK  209 (509)
T ss_pred             hHH------HhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            776      68999999999999999999988887755

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=93.63  E-value=6  Score=36.66  Aligned_cols=127  Identities=9%  Similarity=0.086  Sum_probs=62.7

Q ss_pred             hHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 023063           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (288)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~  102 (288)
                      ..+..++..+..-..+..+.+..+.|-.+..+.++  +......+.....+..++.-.+=-+. .-|....++..+..+.
T Consensus        19 v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~--~~~F~~~~~~~a~i~~ll~~~~n~~~-~~~~~~~~~~~l~~~~   95 (406)
T KOG1479|consen   19 VYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN--SKNFTSSYTLAAQIPLLLFNLLNAFL-NTRLRTRVGYLLSLIA   95 (406)
T ss_pred             HHHHHHHHhcccccchHhhhccHHHHHhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            34444445555555555665555544443334444  55556666666666666665554443 3333222222222222


Q ss_pred             HHHH---HHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCC
Q 023063          103 MICL---TISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDET  166 (288)
Q Consensus       103 ~~~~---~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~  166 (288)
                      .+..   .++..  ..           +...........+..++.+.+.|...+......++ +|.+
T Consensus        96 il~i~~l~~~~v--~~-----------~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~  148 (406)
T KOG1479|consen   96 ILFIVTLDLALV--KT-----------DTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSE  148 (406)
T ss_pred             HHHHHHHHHHhh--cc-----------CCccchhHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHH
Confidence            2221   11110  00           11123345555666677788888888777777666 5554

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=93.25  E-value=3.6  Score=39.29  Aligned_cols=168  Identities=7%  Similarity=-0.058  Sum_probs=89.8

Q ss_pred             CCcchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhc---CCCHHHHHHHHHHHHH-HHhhhHHHHHHHHHhccchhHHHHH
Q 023063           19 GGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQL---HMPLTKAANTLTNFGG-TGSLTPLIGAFVADAYAGRFWTITI   94 (288)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~---~~~~~~~~~~~~~~~~-~~~i~~~~~G~laDr~~Grr~~i~~   94 (288)
                      ..++.++.+.+..|+..+.|....     -+++.+   ..++.....+-....+ +..+...+-.+++|++ +|.+...+
T Consensus        21 ~E~~k~~~l~~m~f~i~f~y~~lR-----~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~-s~~~lFy~   94 (491)
T PF03219_consen   21 SELKKFLPLALMFFFILFNYTILR-----DLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRL-SREKLFYI   94 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----HhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence            345666666666665555433221     122222   1233344444443333 4455567789999998 99998887


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCCCccccc-----ccccch-------HHHHHHHHHHHH-HhccCcchhhhhhhhc
Q 023063           95 ASIIYQIGMICLTISAILPQLRPPPCEGEQVCQ-----EANKGQ-------VAILYVSLLLAA-LGSGGIRPCVVAFGAD  161 (288)
Q Consensus        95 ~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~-----~~~~~~-------~~~~~~~~~l~g-~g~g~~~~~~~~~~~~  161 (288)
                      ....+.....++++.. +|.-.....  +..+.     .+.+-.       -|...+..+..- .|.-...-.-+++..|
T Consensus        95 ~~~~F~~fF~~f~~vl-yP~~~~lhp--~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~  171 (491)
T PF03219_consen   95 IIIPFLGFFALFAFVL-YPNRDILHP--DAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANE  171 (491)
T ss_pred             HHHHHHHHHHHHHHHH-hhchhhcCC--CHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7766666666666543 443211000  00110     000000       011111111111 1111111234778889


Q ss_pred             ccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhheee
Q 023063          162 QFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQD  201 (288)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~  201 (288)
                      .++.+      +-.+.++.+..+.|+|..++..+..++.+
T Consensus       172 itt~~------eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  172 ITTVE------EAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             cCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88877      68899999999999999999888777665

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=92.85  E-value=8.9  Score=36.44  Aligned_cols=73  Identities=10%  Similarity=0.095  Sum_probs=55.6

Q ss_pred             HHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHH
Q 023063          141 LLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFL  218 (288)
Q Consensus       141 ~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~  218 (288)
                      .++.++.........-..+.+.+|+..     +|+..++-++...++...+...+.+.+.+..||...-.+..++.++
T Consensus       273 vi~y~~~~nlve~~~k~~v~~~~p~~~-----~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li  345 (472)
T TIGR00769       273 VIAYGISINLVEVTWKSKLKAQYPSPN-----EYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL  345 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            344566667777777888899998664     7899999998888888877777778889999998766655554444

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=92.18  E-value=3  Score=38.70  Aligned_cols=61  Identities=11%  Similarity=0.005  Sum_probs=48.2

Q ss_pred             hHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhhe
Q 023063          133 QVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYI  199 (288)
Q Consensus       133 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l  199 (288)
                      +.+..++..+..|+..|+.+.+....+.|..+++      +|...++...++-++|..++..++-++
T Consensus       334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~------~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPE------DREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHH------HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            4566666677789999999999999898887765      688888888888888888877765543

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=91.89  E-value=3.3  Score=36.48  Aligned_cols=139  Identities=10%  Similarity=0.066  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHhccchh--HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHH
Q 023063           61 ANTLTNFGGTGSLTPLIGAFVADAYAGRF--WTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILY  138 (288)
Q Consensus        61 ~~~~~~~~~~~~i~~~~~G~laDr~~Grr--~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  138 (288)
                      |.+...++....+++-+...+..|- ..|  ..+.+..++..+...+..+..               ..+|+..++..-.
T Consensus       285 GfiFatFMlASmLGSSla~Rl~s~s-~~~ve~ymqivf~vs~a~l~Lpilt~---------------~vsP~kes~~~s~  348 (454)
T KOG4332|consen  285 GFIFATFMLASMLGSSLASRLLSRS-SPKVESYMQIVFLVSIAALLLPILTS---------------SVSPSKESPSESL  348 (454)
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHhcC-CcccchHHHHHHHHHHHHHHHHHHHh---------------ccCCCcCCchHHH
Confidence            5566666666666655555554443 211  345554444444333333322               1122334555567


Q ss_pred             HHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHH
Q 023063          139 VSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFL  218 (288)
Q Consensus       139 ~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~  218 (288)
                      ++..++-.+.|..+|.+.-+=++..|++      .|++.++++-.-.++-..++-...-.-....+-+..|.++.+...+
T Consensus       349 i~F~~~E~cvGlfwPSimkmRsqyIPEe------arstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~  422 (454)
T KOG4332|consen  349 IGFCLFEACVGLFWPSIMKMRSQYIPEE------ARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFV  422 (454)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHhhCCHH------HHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHH
Confidence            7888888899999999988888888877      6888888877665544433221100001123445677777666555


Q ss_pred             HHH
Q 023063          219 SII  221 (288)
Q Consensus       219 ~~i  221 (288)
                      +.+
T Consensus       423 a~i  425 (454)
T KOG4332|consen  423 ASI  425 (454)
T ss_pred             HHH
Confidence            543

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=91.43  E-value=0.51  Score=44.25  Aligned_cols=130  Identities=5%  Similarity=-0.106  Sum_probs=67.9

Q ss_pred             CCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchH
Q 023063           55 MPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQV  134 (288)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  134 (288)
                      +++...+.+..+..++..++..+....--++ .-|+++....++..+..+.-.+..  .......+.+       +  . 
T Consensus       252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~-~~R~~~~~t~~~~~~~~l~~~~lv--~~~n~~~Gi~-------d--~-  318 (433)
T PF03092_consen  252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNW-SWRRIFVVTTLVSVLASLFDLLLV--TRWNLDLGIP-------D--Q-  318 (433)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHhcccEEEE--EEEeeeeCcC-------C--e-
Confidence            7887777777666666666666654443343 556666555544443333211110  0000000000       0  0 


Q ss_pred             HHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhheeecc
Q 023063          135 AILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNI  203 (288)
Q Consensus       135 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~  203 (288)
                      +.....-++..+..+........+.+|..|+.      .-|..++......|+|..++..++..+.+..
T Consensus       319 ~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G------~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~  381 (433)
T PF03092_consen  319 WFALGDTILEEVIGMIAFMPSLVLAARLCPKG------SEGTVYALLASFSNLGSSVSSTLGAFLMELF  381 (433)
T ss_pred             EEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCC------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            11111122333333444445567789999987      4677777777777777777777766655443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=91.38  E-value=5.6  Score=39.45  Aligned_cols=184  Identities=11%  Similarity=-0.069  Sum_probs=112.7

Q ss_pred             CCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchH
Q 023063           55 MPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQV  134 (288)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  134 (288)
                      ...........++.....+..+.....+|-.-|+-.........++++.+...+.. ++.             .+.....
T Consensus        17 ~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~lla-i~a-------------~~~~~~~   82 (654)
T TIGR00926        17 FLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLS-FGA-------------IPSSGHP   82 (654)
T ss_pred             HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-hcc-------------Ccccccc
Confidence            33345566777778888888888888898885555566666666666666665544 211             0111113


Q ss_pred             HHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhheeeccc-hhh------
Q 023063          135 AILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIG-WGW------  207 (288)
Q Consensus       135 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g-~~~------  207 (288)
                      ....+..+.+.++.++..++-+.+.+++....+   .+++.+..+++++....+.+ |.+++..+..... +..      
T Consensus        83 ~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~---~~~~~~~~s~F~~fY~~iNi-GSlis~~i~~~l~~~~~~fg~~~  158 (654)
T TIGR00926        83 LHDLLDLLGLALIALGTGGIKPCVSAFGGDQFE---ERQLSLRSRFFSFFYFAINA-GSLISTIITPILRGDVGCFGCQD  158 (654)
T ss_pred             hHHHHHHHHHHHHHhhccccccCchhhhHhhcC---ccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcccccCc
Confidence            334456667788888888888888888887653   33355788899998887774 4555555544332 221      


Q ss_pred             hhh-HhHHHHHHHHHHHHHhccceeecCCCCChhhHHHHHHHHHHHhCcc
Q 023063          208 GLG-IPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKRKL  256 (288)
Q Consensus       208 ~f~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (288)
                      .|. ..++..++.++.+..+....+.-++.+.+...+.+++...+...+.
T Consensus       159 ~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~  208 (654)
T TIGR00926       159 CYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRK  208 (654)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHH
Confidence            132 3334444445555566556666666665555567777666666543

>TIGR00806 rfc RFC reduced folate carrier

Probab=87.85  E-value=11  Score=35.90  Aligned_cols=97  Identities=16%  Similarity=0.114  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHH
Q 023063           60 AANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYV  139 (288)
Q Consensus        60 ~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (288)
                      .|..-.+..+.+.+..+..|++-.++ .+.--+.++.....-+.+++. +.                   ...++|+.++
T Consensus       300 NG~veA~~tllga~~a~~ag~~~~~w-~~~~~l~l~v~s~~~~gll~~-m~-------------------~t~~Iw~~Y~  358 (511)
T TIGR00806       300 NGAVDAASTLLGAITSFIAGFVNIRW-ARWSKLLIAVVSAIQAGLVFW-MS-------------------QSHDIWVLYV  358 (511)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhcCCc-hhhHHHHHHHHHHHHHHHhhh-hh-------------------cccchHHHHH
Confidence            34455666777888888999987665 544344444332223322222 22                   2338899999


Q ss_pred             HHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHH
Q 023063          140 SLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF  183 (288)
Q Consensus       140 ~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (288)
                      +.++....+....++...-++.....+      ..+-.||+-.+
T Consensus       359 ~yvlf~~~y~flitia~~~iA~~L~~~------~~aLvFGiNtf  396 (511)
T TIGR00806       359 TYVLFRGIYQFLVPIATFQIASSLSKE------LCALVFGINTF  396 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccc------ceEEEEecHHH
Confidence            999999888888888888888887776      46777776443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=87.49  E-value=1.2  Score=41.68  Aligned_cols=88  Identities=7%  Similarity=-0.102  Sum_probs=53.5

Q ss_pred             CCcchHHHHHHHHHHHHHhHHhhhhhHHHHhHHh-cC-----CC-----------HHHHHHHHHHHHHHHhhhHHHHHHH
Q 023063           19 GGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQ-LH-----MP-----------LTKAANTLTNFGGTGSLTPLIGAFV   81 (288)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-~~-----~~-----------~~~~~~~~~~~~~~~~i~~~~~G~l   81 (288)
                      ..+|.++.+.+...+.-++++.+.-+...++-++ ++     -+           ...-.+-+.++.+...+.+....++
T Consensus       276 ~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lgi~S~~~~~l  355 (498)
T KOG0637|consen  276 VMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLGIYSLLVEKL  355 (498)
T ss_pred             hCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH
Confidence            3557888888888888777776665555555321 11     11           1112334556777788888999999


Q ss_pred             HHhccchhHHHHHHHHHHHHHHHHHH
Q 023063           82 ADAYAGRFWTITIASIIYQIGMICLT  107 (288)
Q Consensus        82 aDr~~Grr~~i~~~~~l~~i~~~~~~  107 (288)
                      .||+ |-|+.+..+...+.+++.+..
T Consensus       356 ~~~~-g~r~~y~~~~~~f~~~~~~~g  380 (498)
T KOG0637|consen  356 SRKF-GTRKRYWGGVNAFGLATGLAG  380 (498)
T ss_pred             HHhc-CcceEEeehhHHHHHHHHHHh
Confidence            9998 855555444443444444444

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=87.16  E-value=29  Score=33.24  Aligned_cols=73  Identities=7%  Similarity=0.133  Sum_probs=52.5

Q ss_pred             HHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHH
Q 023063          141 LLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFL  218 (288)
Q Consensus       141 ~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~  218 (288)
                      .+..++.........-..+.+.+|+..     .+...+|-++...++-..+-..+++.+.++.||..+-.+.-++.++
T Consensus       289 vi~Ygi~inLvE~~wK~~lk~~~~~~~-----~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~AlitPiv~li  361 (491)
T PF03219_consen  289 VIAYGISINLVEVVWKSQLKQLYPDPN-----DYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALITPIVILI  361 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHH
Confidence            344566666777777788888888764     6888888777777777776667778888999998766654444433

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=82.71  E-value=17  Score=26.72  Aligned_cols=44  Identities=14%  Similarity=0.083  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHH
Q 023063           59 KAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGM  103 (288)
Q Consensus        59 ~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~  103 (288)
                      ..+.......++..++..+.|++.|.. |.+....+...+..++.
T Consensus        88 ~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  131 (141)
T TIGR00880        88 ALGLMSAGIALGPLLGPPLGGVLAQFL-GWRAPFLFLAILALAAF  131 (141)
T ss_pred             HHHHHHHhHHHHHHHhHHhHHHHhccc-chHHHHHHHHHHHHHHH
Confidence            344555666778888888999999987 87776666554444443

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=80.50  E-value=9.3  Score=35.92  Aligned_cols=57  Identities=11%  Similarity=0.103  Sum_probs=36.7

Q ss_pred             hHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHh
Q 023063          133 QVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTV  195 (288)
Q Consensus       133 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~  195 (288)
                      +.+..++..++.|+..|-..+....+..+..+++      +|..+-.+...+..+|-.+|..+
T Consensus       371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~------e~e~aG~~~~~~l~~Gl~~Gs~l  427 (437)
T TIGR00939       371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPH------EREVAGALMVIFLLVGLALGAVL  427 (437)
T ss_pred             ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455556677888888888777777777776654      45555555555556666555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	288
2xut_A	524	Crystal Structure Of A Proton Dependent Oligopeptid		2e-11

>pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 92/218 (42%), Gaps = 30/218 (13%)
Query: 24  MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTK------AANTLTNFGGTGSLTPLI 77
           +P+I ++E CE+ +  G    +  +L T L + + +      A +   +F       PL+
Sbjct: 14  IPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLL 73
Query: 78  GAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAIL 137
           G ++AD + G++ TI   S+IY +G   L I                  + + +G     
Sbjct: 74  GGWIADRFFGKYNTILWLSLIYCVGHAFLAI-----------------FEHSVQG----F 112
Query: 138 YVXXXXXXXXXXXIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLV 197
           Y            I+P V +F  DQFD+++   A K    F+ +YF +      A   + 
Sbjct: 113 YTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKA---FDMFYFTINFGSFFASLSMP 169
Query: 198 YIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDP 235
            +  N G     GIP   MF++ + F +G   Y ++ P
Sbjct: 170 LLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPP 207

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	288
2xut_A	524	Proton/peptide symporter family protein; transport	6e-74
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	2e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score =  234 bits (599), Expect = 6e-74
 Identities = 66/271 (24%), Positives = 108/271 (39%), Gaps = 31/271 (11%)

Query: 24  MPFIFSNEVCEKLAVVGFNTNMISYLTTQLH------MPLTKAANTLTNFGGTGSLTPLI 77
           +P+I ++E CE+ +  G    +  +L T L       +    A +   +F       PL+
Sbjct: 14  IPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLL 73

Query: 78  GAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAIL 137
           G ++AD + G++ TI   S+IY +G   L I                         V   
Sbjct: 74  GGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE---------------------HSVQGF 112

Query: 138 YVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLV 197
           Y  L L ALGSGGI+P V +F  DQFD+++   A    K F+ +YF +      A   + 
Sbjct: 113 YTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLA---QKAFDMFYFTINFGSFFASLSMP 169

Query: 198 YIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKRKLT 257
            +  N G     GIP   MF++ + F +G   Y ++ P        L V  +A    K+ 
Sbjct: 170 LLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLT-KVE 228

Query: 258 MVTDPKLLYENEELDAAISLGGKLLHTKHMK 288
              +  L+       +A      +     + 
Sbjct: 229 GKGNIGLVLALIGGVSAAYALVNIPTLGIVA 259

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 77.8 bits (192), Expect = 2e-16
 Identities = 44/238 (18%), Positives = 89/238 (37%), Gaps = 33/238 (13%)

Query: 27  IFSNEVCEKLAVVGFNTNMISYLTTQ-----LHMPLTKAANTLTNFGGTGSLTPLIGAFV 81
           +F  E+ E+ +  G    ++ Y+        LH+    AA+ +  +     L+  IG FV
Sbjct: 18  LFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFV 77

Query: 82  ADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSL 141
           AD   G    +    ++  +G I L +                          + L+ S+
Sbjct: 78  ADRIIGARPAVFWGGVLIMLGHIVLALP----------------------FGASALFGSI 115

Query: 142 LLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQD 201
           +L  +G+G ++P V       +DE D ++       F+ + F +     +A  ++   Q+
Sbjct: 116 ILIIIGTGFLKPNVSTLVGTLYDEHDRRRDA----GFSIFVFGINLGAFIAPLIVGAAQE 171

Query: 202 NIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKRKLTMV 259
             G+     +    MF+ ++ +  G    + LDP     T  L          K+++ 
Sbjct: 172 AAGYHVAFSLAAIGMFIGLLVYYFGGK--KTLDPHYLRPTDPLAPEEVKPLLVKVSLA 227

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 8e-04
 Identities = 30/256 (11%), Positives = 59/256 (23%), Gaps = 77/256 (30%)

Query: 68  GGTG--SLTPLIGAFVADAYA-------GRFWTITIA------SIIYQIGMICLTISAIL 112
            G+G   +       V  +Y          FW + +       +++  +  +   I    
Sbjct: 159 LGSGKTWVA----LDVCLSYKVQCKMDFKIFW-LNLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 113 PQLRPPPCEGEQVCQEANKGQVAIL----YVSLLLAALGSGGIRPCVVAFGADQFDETDP 168
                     +            +L    Y + LL           V+       +  + 
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-----------VL----L--NVQNA 256

Query: 169 KQATKTWKYFNWYYFVMGAAILV------------AVTVLVYIQDNIGWGW----GLGIP 212
           K     W  FN     +   IL+            A T      D+            + 
Sbjct: 257 K----AWNAFN-----LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL- 306

Query: 213 TFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKRKLTMVTDPKLLYENEELD 272
               +L      +            +P    L +   + R    T   D       ++L 
Sbjct: 307 -LLKYLDCRPQDL-----PREVLTTNPR--RLSIIAESIRDGLAT--WDNWKHVNCDKLT 356

Query: 273 AAISLGGKLLHTKHMK 288
             I     +L     +
Sbjct: 357 TIIESSLNVLEPAEYR 372

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	288
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.85
2xut_A	524	Proton/peptide symporter family protein; transport	99.82
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.82
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.77
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.72
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.6
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.6
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.58
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.49
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.37
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.36
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.36
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.09
2xut_A	524	Proton/peptide symporter family protein; transport	98.44

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.85  E-value=3e-20  Score=173.16  Aligned_cols=184  Identities=21%  Similarity=0.397  Sum_probs=162.1

Q ss_pred             cCCcchHHHHHHHHHHHHHhHHhhhhhHHHHhHHh-----cCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHh-ccchhHH
Q 023063           18 KGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQ-----LHMPLTKAANTLTNFGGTGSLTPLIGAFVADA-YAGRFWT   91 (288)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr-~~Grr~~   91 (288)
                      +++++.++.+.+..++.++++|++..+++.|++++     +|++..+.+++.+.+.++..++.+++|+++|| + |||++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~   87 (491)
T 4aps_A            9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA   87 (491)
T ss_dssp             --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence            44567888888999999999999999999999988     99999999999999999999999999999999 7 99999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhh
Q 023063           92 ITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQA  171 (288)
Q Consensus        92 i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~  171 (288)
                      +..+.++..++.+++.++.                      +.+.+++++++.|+|.+...+...++++|.+|++++   
T Consensus        88 ~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~---  142 (491)
T 4aps_A           88 VFWGGVLIMLGHIVLALPF----------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR---  142 (491)
T ss_dssp             HHHHHHHHHHHHHHHHSCC----------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT---
T ss_pred             HHHHHHHHHHHHHHHHHhh----------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc---
Confidence            9999999999988887654                      567788899999999999999999999999998732   


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHHhcc
Q 023063          172 TKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYP  228 (288)
Q Consensus       172 ~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~~~  228 (288)
                       +|+..+++++.+.++|..++|.+++++.+..||+..|++.++..+++++.+....+
T Consensus       143 -~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  198 (491)
T 4aps_A          143 -RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGK  198 (491)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence             47888999999999999999999999999899999999987777666665554443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.82  E-value=1.8e-19  Score=169.46  Aligned_cols=187  Identities=31%  Similarity=0.548  Sum_probs=155.0

Q ss_pred             CcchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcC------CCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHH
Q 023063           20 GMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLH------MPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTIT   93 (288)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~   93 (288)
                      +++.++.+.+..++.++++|++..+++.|+++++|      ++..+.+++.+.+.++..++.+++|+++||++|||+++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~   89 (524)
T 2xut_A           10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL   89 (524)
T ss_dssp             ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence            34556667788999999999999999999999999      999999999999999999999999999999659999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhh
Q 023063           94 IASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATK  173 (288)
Q Consensus        94 ~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  173 (288)
                      ++.++..++.+++.++.                     .+.+.+++++++.|++.+...+...++++|.+|++++.   +
T Consensus        90 ~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~---~  145 (524)
T 2xut_A           90 WLSLIYCVGHAFLAIFE---------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKS---L  145 (524)
T ss_dssp             HHHHHHHHHHHHHHHTS---------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTT---H
T ss_pred             HHHHHHHHHHHHHHHhc---------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchH---H
Confidence            99999988888776543                     14667888899999999999999999999999987310   1


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHHhccce
Q 023063          174 TWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLY  230 (288)
Q Consensus       174 ~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~~~~~  230 (288)
                      +...+++++.+.++|..++|.+++++.+..||+..|++.+++.+++.+.+....++.
T Consensus       146 ~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~  202 (524)
T 2xut_A          146 AQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRY  202 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            244556689999999999999999998888999999988877666665555444443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.82  E-value=1.4e-18  Score=159.16  Aligned_cols=180  Identities=13%  Similarity=0.044  Sum_probs=144.6

Q ss_pred             CCcchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHH
Q 023063           19 GGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASII   98 (288)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l   98 (288)
                      ++++.+..+....+...+........+ .++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||++++++.++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~  100 (438)
T 3o7q_A           23 SYIIPFALLCSLFFLWAVANNLNDILL-PQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFL  100 (438)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHH
Confidence            344455555555555666555544444 456778999999999999999999999999999999998 999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHH
Q 023063           99 YQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  178 (288)
Q Consensus        99 ~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (288)
                      ..++.+++.....                   ..+.+.+++++++.|++.+...+...++++|.+|++      +|++..
T Consensus       101 ~~~~~~~~~~~~~-------------------~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~  155 (438)
T 3o7q_A          101 YALGAALFWPAAE-------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES------SGHFRL  155 (438)
T ss_dssp             HHHHHHHHHHHHH-------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCST------THHHHH
T ss_pred             HHHHHHHHHhccc-------------------cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCch------hHHHHH
Confidence            9999988843220                   116788899999999999999999999999999988      699999


Q ss_pred             HHHHHHHHHHHHHHHHhHhhee-eccc-------------------------hhhhhhHhHHHHHHHHHHHHH
Q 023063          179 NWYYFVMGAAILVAVTVLVYIQ-DNIG-------------------------WGWGLGIPTFAMFLSIIAFLI  225 (288)
Q Consensus       179 ~~~~~~~~~g~~i~~~~~~~l~-~~~g-------------------------~~~~f~~~~~~~~~~~i~~~~  225 (288)
                      ++.+.+.++|..++|.+++++. +..+                         |++.|++.++...+..+.++.
T Consensus       156 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  228 (438)
T 3o7q_A          156 NLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML  228 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999887 5544                         888887766655554444433

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.77  E-value=2.6e-18  Score=157.74  Aligned_cols=177  Identities=13%  Similarity=0.066  Sum_probs=147.7

Q ss_pred             cchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHH
Q 023063           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ  100 (288)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~  100 (288)
                      ++.++.+.+..++..+..+.+...++.+ .+++ .+..+.+++.+.+.++..++.+++|+++||+ |||++++++.++..
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~  103 (451)
T 1pw4_A           27 WQIFLGIFFGYAAYYLVRKNFALAMPYL-VEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA  103 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHT-TSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence            4445555556666666655555555544 4567 9999999999999999999999999999998 99999999999999


Q ss_pred             HHHHHHHH----HhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhh
Q 023063          101 IGMICLTI----SAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWK  176 (288)
Q Consensus       101 i~~~~~~~----~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (288)
                      ++.+++.+    +.                      +.+.+++++++.|++.+...+...++++|.+|++      +|++
T Consensus       104 ~~~~~~~~~~~~~~----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~  155 (451)
T 1pw4_A          104 AVMLFMGFVPWATS----------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGG  155 (451)
T ss_dssp             HHHHHHHHCHHHHS----------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT------HHHH
T ss_pred             HHHHHHHhhhhccc----------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCch------hhhH
Confidence            99998887    54                      5667888899999999999999999999999987      7999


Q ss_pred             HHHHHHHHHHHHHHHHHHhHhheeeccc-hhhhhhHhHHHHHHHHHHHHHhcc
Q 023063          177 YFNWYYFVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLSIIAFLIGYP  228 (288)
Q Consensus       177 ~~~~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~i~~~~~~~  228 (288)
                      .+++.+.+.++|..++|.+++++.+..| |+..|++.+++.++..+..+...+
T Consensus       156 ~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~  208 (451)
T 1pw4_A          156 IVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMR  208 (451)
T ss_dssp             HHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999999998888888 999999888777665555444433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.72  E-value=2.9e-17  Score=147.76  Aligned_cols=166  Identities=10%  Similarity=0.079  Sum_probs=143.0

Q ss_pred             HHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Q 023063           26 FIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMIC  105 (288)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~  105 (288)
                      .+....++..+......+.++.+ .+++|.++.+.+++.+...+...++.++.|+++||+ |||+++..+..+..++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~   81 (375)
T 2gfp_A            4 MLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATLV   81 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHH
Confidence            34445555666666555656554 567999999999999999999999999999999998 9999999999999999988


Q ss_pred             HHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHH
Q 023063          106 LTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVM  185 (288)
Q Consensus       106 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (288)
                      .....                      +.+.+++.+++.|++.+...+...+++.|.+|++      +|++.++..+...
T Consensus        82 ~~~~~----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~  133 (375)
T 2gfp_A           82 AVTTS----------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT------QLRHANSLLNMGI  133 (375)
T ss_dssp             HHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS------SCCSHHHHHHHHH
T ss_pred             HHHhc----------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH------HHHHHHHHHHHHH
Confidence            88776                      7788889999999999999999999999999987      6999999999999


Q ss_pred             HHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHH
Q 023063          186 GAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSII  221 (288)
Q Consensus       186 ~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i  221 (288)
                      ++|..++|.+++++.+..||+..|++.++..++..+
T Consensus       134 ~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  169 (375)
T 2gfp_A          134 LVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF  169 (375)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            999999999999999888999998877766555444

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.60  E-value=2e-14  Score=131.71  Aligned_cols=179  Identities=14%  Similarity=0.122  Sum_probs=145.9

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhcc-chhHHHHHHHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYA-GRFWTITIASIIYQ  100 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~-Grr~~i~~~~~l~~  100 (288)
                      +.++.+.+..++....++++..+++.|+++.+|++..+++.+.....++..++.++.|+++||+. |||+.+..+..+..
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~  331 (451)
T 1pw4_A          252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV  331 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence            56777777888888888999999999999889999999999999999999999999999999942 78888877766555


Q ss_pred             -HHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHH
Q 023063          101 -IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (288)
Q Consensus       101 -i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (288)
                       ++.+++....                    +.+.+...+..++.|++.+...+...+++.|.+|++      .|++..+
T Consensus       332 ~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~~  385 (451)
T 1pw4_A          332 TIATIVYWMNP--------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKK------AAGTAAG  385 (451)
T ss_dssp             HHHHHHTTSCC--------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTT------HHHHHHH
T ss_pred             HHHHHHHHHhc--------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchh------hhhhHHH
Confidence             4443333211                    114555666677888888888888889999999987      6999999


Q ss_pred             HHHHHHHH-HHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHHh
Q 023063          180 WYYFVMGA-AILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIG  226 (288)
Q Consensus       180 ~~~~~~~~-g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~  226 (288)
                      ..+...++ |..++|.+.+++.+..||+..|++.+++.+++.+.....
T Consensus       386 ~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          386 FTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999 999999999999999999999988887777766655543

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.60  E-value=5e-15  Score=137.67  Aligned_cols=133  Identities=13%  Similarity=0.088  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHH
Q 023063           57 LTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAI  136 (288)
Q Consensus        57 ~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  136 (288)
                      ..+.+++.+.+.++..++++++|+++||+ |||++++++.+++.++.++++.+...........  ...  ..-..+.+.
T Consensus        54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~--~~~--~~~a~~~~~  128 (491)
T 4gc0_A           54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDN--TVP--VYLAGYVPE  128 (491)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSS--SCC--GGGGGCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchh--HHH--HHHhhhHHH
Confidence            34567888889999999999999999998 9999999999999999998885331100000000  000  000126788


Q ss_pred             HHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhhee
Q 023063          137 LYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQ  200 (288)
Q Consensus       137 ~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~  200 (288)
                      ++++|++.|+|.|+..+..+++++|..|++      +|++..+..+.+..+|..+++.++..+.
T Consensus       129 l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~------~rg~~~~~~~~~~~~g~~~~~~~~~~~~  186 (491)
T 4gc0_A          129 FVIYRIIGGIGVGLASMLSPMYIAELAPAH------IRGKLVSFNQFAIIFGQLLVYCVNYFIA  186 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSCGG------GHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCHH------hhhhhHHhhhhhhhhhhhhhhhcchhhc
Confidence            999999999999999999999999999988      7999999999999999999888776544

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.58  E-value=7.2e-14  Score=127.68  Aligned_cols=167  Identities=13%  Similarity=0.084  Sum_probs=133.6

Q ss_pred             cchHHHHHHHHHHHHHhHHhhhhhHHHH-hHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHH
Q 023063           21 MITMPFIFSNEVCEKLAVVGFNTNMISY-LTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIY   99 (288)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~   99 (288)
                      .+.++...+..++.....+.+..+++.| +++.+|++..+++.......++..++.+++|+++||+ |||+.+..+.++.
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~  335 (438)
T 3o7q_A          257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIA  335 (438)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHH
Confidence            3566666677777777888888999999 8888899999999999999999999999999999998 9999999998888


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHH
Q 023063          100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (288)
Q Consensus       100 ~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (288)
                      .++.++.....                      +.+. .+..++.+++.+...+...++..|.+|++       ++...+
T Consensus       336 ~~~~~~~~~~~----------------------~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~  385 (438)
T 3o7q_A          336 MALCLISAFAG----------------------GHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSS  385 (438)
T ss_dssp             HHHHHHHHHCC----------------------HHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHH
T ss_pred             HHHHHHHHHcC----------------------CcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhh
Confidence            87776666543                      3332 33446778888888999999989998864       555555


Q ss_pred             HHHHHHHHHHHHHHHhHhheeeccc-hhhhhhHhHHHHHHH
Q 023063          180 WYYFVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLS  219 (288)
Q Consensus       180 ~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~~~~~~~~~~  219 (288)
                      +.. ...+|+.++|.+.|++.+..| ++..|.+.+++.++.
T Consensus       386 ~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  425 (438)
T 3o7q_A          386 FIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI  425 (438)
T ss_dssp             HHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            544 566999999999999999888 998888765544433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.49  E-value=1.7e-13  Score=125.40  Aligned_cols=174  Identities=9%  Similarity=0.049  Sum_probs=122.8

Q ss_pred             hHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCC---CHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHH
Q 023063           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHM---PLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIY   99 (288)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~   99 (288)
                      ..+......++....++....+++.|+.+.++.   +....+....+..++..++.++.|+++||+ |||+.+..+..+.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~  299 (417)
T 2cfq_A          221 KLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIM  299 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHH
Confidence            344444343444445555556788888766553   234456666666677788899999999998 9999998888777


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHH
Q 023063          100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (288)
Q Consensus       100 ~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (288)
                      .++.++..+..                      +.+.+.+...+.+++.+...+...++++|.+|++      .|++..+
T Consensus       300 ~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~------~~g~~~g  351 (417)
T 2cfq_A          300 SVRIIGSSFAT----------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVR------FSATIYL  351 (417)
T ss_dssp             HHHHHHHTTCC----------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHH------HHHHHHH
T ss_pred             HHHHHHHHHhc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHH
Confidence            66654443322                      3344445555566666555566678999999987      6888888


Q ss_pred             H-HHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHH
Q 023063          180 W-YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (288)
Q Consensus       180 ~-~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~  225 (288)
                      . ++....+|+.++|.+.|++.+..|++..|.+.+++.+++.+..+.
T Consensus       352 ~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  398 (417)
T 2cfq_A          352 VCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF  398 (417)
T ss_dssp             HHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence            8 577888999999999999988888888888877776666655443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.37  E-value=3.3e-12  Score=118.61  Aligned_cols=185  Identities=9%  Similarity=-0.026  Sum_probs=133.1

Q ss_pred             hHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHH-----HHHH
Q 023063           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTIT-----IASI   97 (288)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~-----~~~~   97 (288)
                      ..+.+.+..++....+.....+++.|+.+.++.+..+.+.......+...++.++.|++.||+ |||+...     .+..
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~  362 (491)
T 4aps_A          284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLM  362 (491)
T ss_dssp             THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHH
Confidence            344455555566666677778889999988888766777777788888888899999999998 9886544     6666


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhH
Q 023063           98 IYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  177 (288)
Q Consensus        98 l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (288)
                      +..++.+++........             .+.+.+.+.+.+..++.+++.+...+...+++.|.+|++      .|+.+
T Consensus       363 ~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~------~~g~~  423 (491)
T 4aps_A          363 FAGLSFLLMAIPGALYG-------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKA------FNSQM  423 (491)
T ss_dssp             HHHHHHTTTHHHHHHCC-------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT------CSSSS
T ss_pred             HHHHHHHHHHHHHHhcC-------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHH------HHHHH
Confidence            66666655544321000             001124556667778889999998999999999999998      59999


Q ss_pred             HHHHHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHHhcc
Q 023063          178 FNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYP  228 (288)
Q Consensus       178 ~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~~~  228 (288)
                      .+..+...++|..+++.+.+++.+. ++...|.+.+++.+++.+..+...+
T Consensus       424 ~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  473 (491)
T 4aps_A          424 MSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSK  473 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998887654 5666777777666666655555443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.36  E-value=2.5e-11  Score=112.64  Aligned_cols=183  Identities=14%  Similarity=0.066  Sum_probs=119.6

Q ss_pred             hHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 023063           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (288)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~  102 (288)
                      .........++..+..+....+...++.+..+.+..+.........+...++.++++++.||+ |||+.++.+.....++
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~  355 (491)
T 4gc0_A          277 VIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIG  355 (491)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHH
Confidence            333333344444333333333444455567788888887777788888899999999999998 9999999998888887


Q ss_pred             HHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHH
Q 023063          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (288)
Q Consensus       103 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (288)
                      .+.+.......                .+.............+++. ...+....+.+|.+|++      .|+.+.++.+
T Consensus       356 ~~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~------~R~~~~g~~~  412 (491)
T 4gc0_A          356 MFSLGTAFYTQ----------------APGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNA------IRGKALAIAV  412 (491)
T ss_dssp             HHHHHHHHHTT----------------CCHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTT------THHHHHHHHH
T ss_pred             HHHHHHHHhcc----------------cchHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHh------HHHHHHHHHH
Confidence            77665543110                1111112222222222332 23466778999999998      6999999999


Q ss_pred             HHHHHHHHHHHHhHhheeec------cchhhhhhHhHHHHHHHHHHHHHhccc
Q 023063          183 FVMGAAILVAVTVLVYIQDN------IGWGWGLGIPTFAMFLSIIAFLIGYPL  229 (288)
Q Consensus       183 ~~~~~g~~i~~~~~~~l~~~------~g~~~~f~~~~~~~~~~~i~~~~~~~~  229 (288)
                      ....+|+.+++.+.+.+.+.      .++...|++.+++.+++.+..++..|+
T Consensus       413 ~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PE  465 (491)
T 4gc0_A          413 AAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE  465 (491)
T ss_dssp             HHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecC
Confidence            99999999988887765442      334456666666666666665555554

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.36  E-value=3.4e-14  Score=130.13  Aligned_cols=170  Identities=6%  Similarity=-0.082  Sum_probs=110.3

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i  101 (288)
                      |..+.+....++...++..+.++++.|+++++|+++.+.+++.+...++..++++++|+++||+ |||++++++..++.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~   85 (417)
T 2cfq_A            7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence            4455555555666666677778999999988999999999999999999999999999999998 999999988876654


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCcccccccccchH-HHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 023063          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQV-AILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (288)
Q Consensus       102 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (288)
                      +..........+                   .. ..+..++++.+++.+...+...+...+..++.    .++++..++.
T Consensus        86 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~~g~  142 (417)
T 2cfq_A           86 MFAPFFIFIFGP-------------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV----SRRSNFEFGR  142 (417)
T ss_dssp             CHHHHHHHTHHH-------------------HHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH----HHHHTCCHHH
T ss_pred             HHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh----hhhcccchHH
Confidence            332221101000                   00 00112223333333332222233333333221    1145666666


Q ss_pred             HHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHH
Q 023063          181 YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAM  216 (288)
Q Consensus       181 ~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~  216 (288)
                      .+...++|..++|.+++++.+ .+|+..|++.++..
T Consensus       143 ~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~  177 (417)
T 2cfq_A          143 ARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCA  177 (417)
T ss_dssp             HSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHH
Confidence            666778899999999888765 57888887765543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.09  E-value=1.9e-11  Score=109.47  Aligned_cols=164  Identities=9%  Similarity=-0.030  Sum_probs=122.8

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHH-HH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASII-YQ  100 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l-~~  100 (288)
                      +.++...+..++.....+.+..+++.|+++.+|.++.+.+.+.....++..++.++.|+++||+ |++  +..+..+ ..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~  275 (375)
T 2gfp_A          199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL  275 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence            4566666677777788888888889999888999999999999999999999999999999998 772  2333322 22


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 023063          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (288)
Q Consensus       101 i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (288)
                      ++.........                  .+.+.+.+.+..++.+++.+...+...++..|.+| +      +|++..+.
T Consensus       276 ~~~~~~~~~~~------------------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~------~~g~~~g~  330 (375)
T 2gfp_A          276 AGLLMWIPDWF------------------GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-F------LAGTAGAL  330 (375)
T ss_dssp             TSSSSSHHHHH------------------HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-H------HHHHHHHH
T ss_pred             HHHHHHHHhhh------------------ccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-c------ccchHHHH
Confidence            22221111100                  01144556667778889999999999999999988 4      69999999


Q ss_pred             HHHHHHHHHHHHHHhHhheeeccchhhhhhHhH
Q 023063          181 YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPT  213 (288)
Q Consensus       181 ~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~  213 (288)
                      .+...++|..++|.+.+.+.+..++...+.+..
T Consensus       331 ~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~  363 (375)
T 2gfp_A          331 VGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL  363 (375)
T ss_dssp             HHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            999999999999999998877777776665543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.44  E-value=5.1e-08  Score=91.09  Aligned_cols=64  Identities=9%  Similarity=0.093  Sum_probs=55.7

Q ss_pred             hHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhheeec
Q 023063          133 QVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN  202 (288)
Q Consensus       133 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~  202 (288)
                      +.+.+.+..++.+++.+...+...++..|..|++      .|++..++.+...++|+.++|.+.+.+.+.
T Consensus       404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~  467 (524)
T 2xut_A          404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKA------MKGTIMSFWTLSVTVGNLWVLLANVSVKSP  467 (524)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTT------CCTTTHHHHGGGHHHHHHHHHHHHHHTTSC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH------HHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            4455666778889999998999999999999987      699999999999999999999999988763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	288
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.74
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.54
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.53
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.44

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=7e-18  Score=151.87  Aligned_cols=160  Identities=12%  Similarity=0.082  Sum_probs=133.0

Q ss_pred             hhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 023063           43 TNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEG  122 (288)
Q Consensus        43 ~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~  122 (288)
                      +....+++ ++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.+++......+         
T Consensus        45 ~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~---------  113 (447)
T d1pw4a_          45 ALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWAT---------  113 (447)
T ss_dssp             HHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHH---------
T ss_pred             HHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHhhccccchhh---------
Confidence            44556776 5899999999999999999999999999999998 999999999999999988877653111         


Q ss_pred             cccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhheeec
Q 023063          123 EQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN  202 (288)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~  202 (288)
                               .+.+.+++.+++.|++.+...+...++++|.+|++      +|++.+++++.+.++|..+++.+.+.+...
T Consensus       114 ---------~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~  178 (447)
T d1pw4a_         114 ---------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGIPPLLFLLGMAW  178 (447)
T ss_dssp             ---------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT------HHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred             ---------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhh------cccccccccccccchhhhhhhhhhhhHhhh
Confidence                     14567888899999999999999999999999987      799999999999999999999888866554


Q ss_pred             -cchhhhhhHhHHHHHHHHHHHHHhcc
Q 023063          203 -IGWGWGLGIPTFAMFLSIIAFLIGYP  228 (288)
Q Consensus       203 -~g~~~~f~~~~~~~~~~~i~~~~~~~  228 (288)
                       .+|+..|++.+++.++..+..+...+
T Consensus       179 ~~~w~~~~~~~~~~~~~~~~~~~~~~~  205 (447)
T d1pw4a_         179 FNDWHAALYMPAFCAILVALFAFAMMR  205 (447)
T ss_dssp             TCCSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred             hhcccccchhhhhhHHHHHHHHHHhcc
Confidence             47898888877776665555544443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=2.1e-14  Score=125.92  Aligned_cols=180  Identities=6%  Similarity=-0.083  Sum_probs=117.0

Q ss_pred             chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 023063           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (288)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i  101 (288)
                      |..|.+.+..++..+.+....+.++.|+++++|+++.+.+++.+++.+...++.++.|+++||+ ||||+++++..+..+
T Consensus         7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~   85 (417)
T d1pv7a_           7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence            5677777777777777777778899999999999999999999999999999999999999998 999999999888888


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 023063          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (288)
Q Consensus       102 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (288)
                      +.+........+.                  ......+.+.+.+.+.+...........+..+++    .+++....+..
T Consensus        86 ~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  143 (417)
T d1pv7a_          86 MFAPFFIFIFGPL------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV----SRRSNFEFGRA  143 (417)
T ss_dssp             THHHHHHHTHHHH------------------HHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHH----HHHHSCCHHHH
T ss_pred             HHHHHHHhhhhhh------------------HHHHHHHHHHHhhhcccccccchhhcccccccch----hhhhHHHHHHH
Confidence            8777776541000                  1111122222222222222222222222222221    11345556666


Q ss_pred             HHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHH
Q 023063          182 YFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (288)
Q Consensus       182 ~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~  225 (288)
                      ......+..+++.+++.+.+. +|+..+........+..+....
T Consensus       144 ~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~  186 (417)
T d1pv7a_         144 RMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFF  186 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHS
T ss_pred             hhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHH
Confidence            677788888888888877654 4444444444444333333333

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=1e-13  Score=124.09  Aligned_cols=181  Identities=13%  Similarity=0.090  Sum_probs=137.2

Q ss_pred             cchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHH
Q 023063           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ  100 (288)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~  100 (288)
                      .+.++.+....++.....++...+.+.|+.+.++++..+.+.......+...++.+++|+++||+ +|++..........
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~  326 (447)
T d1pw4a_         248 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMT  326 (447)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHHH
T ss_pred             CchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhHH
Confidence            35666777778888888888999999999999999999999999999999999999999999998 87654444333333


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 023063          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (288)
Q Consensus       101 i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (288)
                      +..+........                 ...+.+...+..++.|++.++..+....+..|.+|++      .|+++.++
T Consensus       327 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~  383 (447)
T d1pw4a_         327 LVTIATIVYWMN-----------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKK------AAGTAAGF  383 (447)
T ss_dssp             HHHHHHHHTTSC-----------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTT------HHHHHHHH
T ss_pred             HHHHHHHHHHhc-----------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH------HHHHHHHH
Confidence            222222221100                 1124556666677778888888888899999999987      69999999


Q ss_pred             HHHHHHHH-HHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHH
Q 023063          181 YYFVMGAA-ILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (288)
Q Consensus       181 ~~~~~~~g-~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~  225 (288)
                      .+...+++ ..++|.+.+++.+.+||+..|.+..++.+++.+....
T Consensus       384 ~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  429 (447)
T d1pw4a_         384 TGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  429 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            88877774 5668899999999999998888777666655544433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=8.8e-14  Score=121.90  Aligned_cols=145  Identities=8%  Similarity=0.015  Sum_probs=119.3

Q ss_pred             CCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccch
Q 023063           54 HMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQ  133 (288)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  133 (288)
                      +.+....+.......++..++..+.+++.||+ |+|+.+.++..+..++.+......                      +
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~----------------------~  311 (417)
T d1pv7a_         255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFAT----------------------S  311 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTCC----------------------C
T ss_pred             ccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhcccccc----------------------c
Confidence            34555666677777888889999999999998 999999999988888877776544                      5


Q ss_pred             HHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH-HHHHHHHHHHHHHhHhheeeccchhhhhhHh
Q 023063          134 VAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY-YFVMGAAILVAVTVLVYIQDNIGWGWGLGIP  212 (288)
Q Consensus       134 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~  212 (288)
                      .+.+.+..++.+++.+...+...+++.|.+|++      .|++..+.. +....+|..++|.+.|++.+.+|++..|++.
T Consensus       312 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~  385 (417)
T d1pv7a_         312 ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVR------FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVL  385 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGG------GHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
Confidence            667777778889999999999999999999987      699999875 5667899999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHhc
Q 023063          213 TFAMFLSIIAFLIGY  227 (288)
Q Consensus       213 ~~~~~~~~i~~~~~~  227 (288)
                      +++.++..++..+..
T Consensus       386 ~~~~~~~~~~~~~~l  400 (417)
T d1pv7a_         386 GLVALGFTLISVFTL  400 (417)
T ss_dssp             HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhh
Confidence            777766665554443