Citrus Sinensis ID: 023068

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------
MSGLYNPNFSPARAASPQIRSTPDINIDSQYLSELLAEHQKLGPFTQVLPICSRLLTQEIFRVSGMMPNQGFGDFDRLRHRSPSPMASSNLMSNVAGTGLGGWNGLPQERLGGPPGMTMDWQSAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNFREDSPGPSGSVSPFNSSGMKRAKTGR
cccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccEEEccccccccHHHHHHHHHccEEEEEcccccccccccccccccccccccccccccccEEEEEEcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccc
ccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHcccHHHHcccHHHHccccccccccccccEEEEEEEEEcccccccccEEEEEEcccccHHHHHHHHcccEEEEEEcccccccccccHHHHHccccccccHcccccEEEEEEcccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccc
msglynpnfsparaaspqirstpdinidSQYLSELLAEHqklgpftqvlpICSRLLTQEIFRvsgmmpnqgfgdfdrlrhrspspmassnlmsnvagtglggwnglpqerlggppgmtmdwqsapaspssytvKRILRleipvdtypnfnfvgrllgprgnslkRVEATTgcrvyirgkgsikdpdkvstpedklrgrpgyehlndplhilieadlpanIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSnfredspgpsgsvspfnssgmkraktgr
msglynpnfsparaaspqirstpDINIDSQYLSELLAEHQKLGPFTQVLPICSRLLTQEIFRVSGMMPNQGFGDFDRLRHRSPSPMASSNLMSNVAGTGLGGWNGLPQERLGGPPGMTMDWQSAPASPSSYTVKRILRLEIPVDTYPNFNfvgrllgprgnslkrveattgcrvyirgkgsikdpdkvstpedklrgrpgyehlNDPLHILIEADLPANIVDIRLRQAQEIIEEllkpvdesqDYIKRQQLRELAMLNSnfredspgpsgsvspfnssgmkraktgr
MSGLYNPNFSPARAASPQIRSTPDINIDSQYLSELLAEHQKLGPFTQVLPICSRLLTQEIFRVSGMMPNQGFGDFDRLRHRSPSPMASSNLMSNVAGTGLGGWNGLPQERLGGPPGMTMDWQSAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNFREDSPGPSGSVSPFNSSGMKRAKTGR
**************************IDSQYLSELLAEHQKLGPFTQVLPICSRLLTQEIFRVSGMMPN*********************************W***************************YTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRG**********************YEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPV************************************************
**********************************LLAEHQKLGPFTQVLPICSRLLTQEIFRV*****************************************************************SSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIR***************************NDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELA********************************
MSGLYNPNFSPARAASPQIRSTPDINIDSQYLSELLAEHQKLGPFTQVLPICSRLLTQEIFRVSGMMPNQGFGDFDRLRHRSPSPMASSNLMSNVAGTGLGGWNGLPQERLGGPPGMTMDWQSAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNFR*************************
************************INIDSQYLSELLAEHQKLGPFTQVLPICSRLLTQEIFRVSGMMPNQGFGDF******SPSPMASSNLMSNVAGTGLGGWNGLPQERLGGPPGMTMDWQSAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS**************RGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNFR*************************
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MSGLYNPNFSPARAASPQIRSTPDINIDSQYLSELLAEHQKLGPFTQVLPICSRLLTQEIFRVSGMMPNQGFGDFDRLRHRSPSPMASSNLMSNVAGTGLGGWNGLPQERLGGPPGMTMDWQSAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNFREDSPGPSGSVSPFNSSGMKRAKTGR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query287 2.2.26 [Sep-21-2011]
Q9ZVI3286 KH domain-containing prot yes no 0.975 0.979 0.859 1e-136
Q8GYR4283 KH domain-containing prot no no 0.982 0.996 0.836 1e-131
Q75GR5281 KH domain-containing prot yes no 0.979 1.0 0.752 1e-116
Q0WLR1308 KH domain-containing prot no no 0.916 0.853 0.537 3e-74
Q9FKT4315 KH domain-containing prot no no 0.902 0.822 0.553 3e-73
Q8GWR3298 KH domain-containing prot no no 0.829 0.798 0.509 7e-63
Q6P104319 Protein quaking-B OS=Dani yes no 0.425 0.382 0.476 4e-30
Q6IRN2 342 Protein quaking-B OS=Xeno N/A no 0.425 0.356 0.476 4e-30
Q5W9D5 341 Protein quaking OS=Sus sc yes no 0.425 0.357 0.476 5e-30
Q9QYS9 341 Protein quaking OS=Mus mu yes no 0.425 0.357 0.476 5e-30
>sp|Q9ZVI3|QKIL3_ARATH KH domain-containing protein At2g38610 OS=Arabidopsis thaliana GN=At2g38610 PE=1 SV=1 Back     alignment and function desciption
 Score =  486 bits (1250), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 250/291 (85%), Positives = 264/291 (90%), Gaps = 11/291 (3%)

Query: 1   MSGLYNPN--FSPARAASPQIRSTPDINIDSQYLSELLAEHQKLGPFTQVLPICSRLLTQ 58
           MSGLYN +  FSPARAASPQIRSTP+I+  SQYL+ELLAEHQKL PF QVLPICSRLL Q
Sbjct: 1   MSGLYNNSSYFSPARAASPQIRSTPEID-SSQYLTELLAEHQKLTPFMQVLPICSRLLNQ 59

Query: 59  EIFRVSGMMPNQGFGDFDRLRHRSPSPMASSNLMSNVAGTGLGGWNGLPQERLGGPPGMT 118
           E+FRVSGMM NQGFGDFDRLRHRSPSPMASSNLMSNV+ TGLGGWNGL QERL G PGMT
Sbjct: 60  EMFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVSNTGLGGWNGLSQERLSGTPGMT 119

Query: 119 MDWQSAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRG 178
           MDWQ AP SPSSYTVKRILRLEIPVD YPNFNFVGRLLGPRGNSLKRVEATTGCRV+IRG
Sbjct: 120 MDWQGAPGSPSSYTVKRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRG 179

Query: 179 KGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKP 238
           KGSIKDP+K    EDKLRGRPGYEHLN+ LHILIEADLPA+IV+IRLRQAQEIIEELLKP
Sbjct: 180 KGSIKDPEK----EDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELLKP 235

Query: 239 VDESQDYIKRQQLRELAMLNS-NFREDSPGPS--GSVSPFNSSGMKRAKTG 286
           VDESQD+IKRQQLRELA+LNS N RE+SPGPS  GSVSPFNSSG KR KTG
Sbjct: 236 VDESQDFIKRQQLRELALLNSNNLREESPGPSGGGSVSPFNSSG-KRPKTG 285

Arabidopsis thaliana (taxid: 3702)
>sp|Q8GYR4|QKIL4_ARATH KH domain-containing protein At3g08620 OS=Arabidopsis thaliana GN=At3g08620 PE=2 SV=1 Back     alignment and function description
>sp|Q75GR5|SPIN1_ORYSJ KH domain-containing protein SPIN1 OS=Oryza sativa subsp. japonica GN=SPIN1 PE=1 SV=1 Back     alignment and function description
>sp|Q0WLR1|QKIL1_ARATH KH domain-containing protein At4g26480 OS=Arabidopsis thaliana GN=At4g26480 PE=2 SV=1 Back     alignment and function description
>sp|Q9FKT4|QKIL2_ARATH KH domain-containing protein At5g56140 OS=Arabidopsis thaliana GN=At5g56140 PE=2 SV=1 Back     alignment and function description
>sp|Q8GWR3|QKIL5_ARATH KH domain-containing protein At1g09660 OS=Arabidopsis thaliana GN=At1g09660 PE=2 SV=1 Back     alignment and function description
>sp|Q6P104|QKIB_DANRE Protein quaking-B OS=Danio rerio GN=qkib PE=2 SV=1 Back     alignment and function description
>sp|Q6IRN2|QKIB_XENLA Protein quaking-B OS=Xenopus laevis GN=qki-b PE=1 SV=1 Back     alignment and function description
>sp|Q5W9D5|QKI_PIG Protein quaking OS=Sus scrofa GN=QKI PE=2 SV=1 Back     alignment and function description
>sp|Q9QYS9|QKI_MOUSE Protein quaking OS=Mus musculus GN=Qki PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query287
255582022 680 conserved hypothetical protein [Ricinus 0.972 0.410 0.933 1e-152
224069102281 predicted protein [Populus trichocarpa] 0.979 1.0 0.926 1e-151
356568258281 PREDICTED: KH domain-containing protein 0.979 1.0 0.916 1e-149
356532119281 PREDICTED: KH domain-containing protein 0.979 1.0 0.912 1e-149
225439096281 PREDICTED: KH domain-containing protein 0.979 1.0 0.912 1e-148
255647494281 unknown [Glycine max] 0.979 1.0 0.905 1e-147
224140633281 predicted protein [Populus trichocarpa] 0.979 1.0 0.923 1e-144
356560101281 PREDICTED: KH domain-containing protein 0.979 1.0 0.874 1e-143
356506347281 PREDICTED: KH domain-containing protein 0.979 1.0 0.878 1e-143
255637373281 unknown [Glycine max] 0.979 1.0 0.874 1e-143
>gi|255582022|ref|XP_002531808.1| conserved hypothetical protein [Ricinus communis] gi|223528542|gb|EEF30565.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  543 bits (1398), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 266/285 (93%), Positives = 273/285 (95%), Gaps = 6/285 (2%)

Query: 1   MSGLYNPNFSPARAASPQIRSTPDINIDSQYLSELLAEHQKLGPFTQVLPICSRLLTQEI 60
           MSGLYNPNFSPARAASPQIRSTPD+  DSQYLSELLAEHQKLGPF QVLPICSRLL QEI
Sbjct: 1   MSGLYNPNFSPARAASPQIRSTPDV--DSQYLSELLAEHQKLGPFMQVLPICSRLLNQEI 58

Query: 61  FRVSGMMPNQGFGDFDRLRHRSPSPMASSNLMSNVAGTGLGGWNGLPQERLGGPPGMTMD 120
           FRVSGMM NQGFGDFDRLRHRSPSPMASSNLMSNV+GTGLG WNGLPQERL GPPGMTMD
Sbjct: 59  FRVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVSGTGLGSWNGLPQERLSGPPGMTMD 118

Query: 121 WQSAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKG 180
           WQSAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKG
Sbjct: 119 WQSAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKG 178

Query: 181 SIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVD 240
           SIKDPDK    E+KLRGRPGYEHLNDPLHILIEADLPANIV++RLRQAQEII ELLKPVD
Sbjct: 179 SIKDPDK----EEKLRGRPGYEHLNDPLHILIEADLPANIVEMRLRQAQEIIGELLKPVD 234

Query: 241 ESQDYIKRQQLRELAMLNSNFREDSPGPSGSVSPFNSSGMKRAKT 285
           ESQD+IKRQQLRELAMLNSNFREDSPGPSGSVSPFN+SGMKRAKT
Sbjct: 235 ESQDFIKRQQLRELAMLNSNFREDSPGPSGSVSPFNTSGMKRAKT 279

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224069102|ref|XP_002326275.1| predicted protein [Populus trichocarpa] gi|222833468|gb|EEE71945.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356568258|ref|XP_003552330.1| PREDICTED: KH domain-containing protein At2g38610-like [Glycine max] Back     alignment and taxonomy information
>gi|356532119|ref|XP_003534621.1| PREDICTED: KH domain-containing protein At2g38610-like [Glycine max] Back     alignment and taxonomy information
>gi|225439096|ref|XP_002268790.1| PREDICTED: KH domain-containing protein At2g38610 [Vitis vinifera] gi|296085835|emb|CBI31159.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255647494|gb|ACU24211.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|224140633|ref|XP_002323686.1| predicted protein [Populus trichocarpa] gi|222868316|gb|EEF05447.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356560101|ref|XP_003548334.1| PREDICTED: KH domain-containing protein At2g38610-like [Glycine max] Back     alignment and taxonomy information
>gi|356506347|ref|XP_003521946.1| PREDICTED: KH domain-containing protein At2g38610-like [Glycine max] Back     alignment and taxonomy information
>gi|255637373|gb|ACU19015.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query287
TAIR|locus:2077818283 AT3G08620 "AT3G08620" [Arabido 0.982 0.996 0.836 4.6e-128
TAIR|locus:2064097286 AT2G38610 "AT2G38610" [Arabido 0.975 0.979 0.859 1.4e-126
UNIPROTKB|Q75GR5281 SPIN1 "KH domain-containing pr 0.979 1.0 0.752 4.1e-113
TAIR|locus:2161845315 AT5G56140 "AT5G56140" [Arabido 0.947 0.863 0.534 1.6e-70
TAIR|locus:2024326298 AT1G09660 "AT1G09660" [Arabido 0.885 0.852 0.5 3.9e-60
FB|FBgn0264491 405 how "held out wings" [Drosophi 0.459 0.325 0.426 3.4e-32
ZFIN|ZDB-GENE-081028-54 345 qkib "QKI, KH domain containin 0.505 0.420 0.44 1.6e-29
ZFIN|ZDB-GENE-040426-1462319 qki2 "QKI, KH domain containin 0.505 0.454 0.433 1.6e-29
UNIPROTKB|G5EFF1 445 asd-2 "Protein ASD-2, isoform 0.411 0.265 0.426 1.7e-29
UNIPROTKB|F1N7N1 315 QKI "Protein quaking" [Bos tau 0.425 0.387 0.476 2.7e-29
TAIR|locus:2077818 AT3G08620 "AT3G08620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1257 (447.5 bits), Expect = 4.6e-128, P = 4.6e-128
 Identities = 241/288 (83%), Positives = 264/288 (91%)

Query:     1 MSGLYN-PNFSPARAASPQIRSTPDINIDSQYLSELLAEHQKLGPFTQVLPICSRLLTQE 59
             MSGLYN  NFSP+RAASPQIR TP  ++DSQY+S+LLAEHQKLGPF QVLPICSRLL QE
Sbjct:     1 MSGLYNYNNFSPSRAASPQIR-TPSSDVDSQYISQLLAEHQKLGPFMQVLPICSRLLNQE 59

Query:    60 IFRVSGMMPNQGFGDFDRLRHRSPSPMASSNLMSNVAGTGLGGWNGLPQERLGGPPGMTM 119
             IFR++GMMPNQGF DFDRLRHRSPSPMAS NLMSNV+G GLGGWNGLP ER+GGP GM M
Sbjct:    60 IFRITGMMPNQGFTDFDRLRHRSPSPMASPNLMSNVSGGGLGGWNGLPPERIGGPHGMAM 119

Query:   120 DWQSAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 179
             +WQ APASPSSY VKRILRL++PVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGK
Sbjct:   120 EWQGAPASPSSYPVKRILRLDLPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 179

Query:   180 GSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPV 239
             GSIKDP+K    E+KL+G+PGYEHLN+ LHILIEADLP +IVDI+LRQAQEIIEEL+KPV
Sbjct:   180 GSIKDPEK----EEKLKGKPGYEHLNEQLHILIEADLPIDIVDIKLRQAQEIIEELVKPV 235

Query:   240 DESQDYIKRQQLRELAMLNSNFREDSPGPSGSVSPFNSSGMKRAKTGR 287
             DESQDYIKRQQLRELA+LNSN RE+SPGPSGSVSPFNS+ MKR KTGR
Sbjct:   236 DESQDYIKRQQLRELALLNSNLRENSPGPSGSVSPFNSNAMKRPKTGR 283
GO:0003676 "nucleic acid binding" evidence=ISS
GO:0003723 "RNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0010048 "vernalization response" evidence=RCA
TAIR|locus:2064097 AT2G38610 "AT2G38610" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q75GR5 SPIN1 "KH domain-containing protein SPIN1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2161845 AT5G56140 "AT5G56140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024326 AT1G09660 "AT1G09660" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0264491 how "held out wings" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-081028-54 qkib "QKI, KH domain containing, RNA binding b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1462 qki2 "QKI, KH domain containing, RNA binding 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|G5EFF1 asd-2 "Protein ASD-2, isoform c" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|F1N7N1 QKI "Protein quaking" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q75GR5SPIN1_ORYSJNo assigned EC number0.75260.97901.0yesno
Q8GYR4QKIL4_ARATHNo assigned EC number0.83680.98250.9964nono
Q9ZVI3QKIL3_ARATHNo assigned EC number0.85910.97560.9790yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_280159
hypothetical protein (281 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query287
cd02395120 cd02395, SF1_like-KH, Splicing factor 1 (SF1) K ho 5e-49
COG5176269 COG5176, MSL5, Splicing factor (branch point bindi 4e-22
smart0032268 smart00322, KH, K homology RNA-binding domain 6e-06
cd0010564 cd00105, KH-I, K homology RNA-binding domain, type 9e-06
pfam0001359 pfam00013, KH_1, KH domain 0.003
>gnl|CDD|239088 cd02395, SF1_like-KH, Splicing factor 1 (SF1) K homology RNA-binding domain (KH) Back     alignment and domain information 
 Score =  158 bits (401), Expect = 5e-49
 Identities = 67/126 (53%), Positives = 90/126 (71%), Gaps = 9/126 (7%)

Query: 138 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRG 197
           ++ IPV  YP +NFVG +LGPRGN+LK++E  TG ++ IRGKGS+KD  K    E++LRG
Sbjct: 3   KVYIPVKQYPKYNFVGLILGPRGNTLKQLEKETGAKISIRGKGSMKDGKK----EEELRG 58

Query: 198 RPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKP-VDESQDYIKRQQLRELAM 256
            P Y HLN+PLH+LI A+ P    +  L +A E IEELLKP ++   D +KR+QLRELA+
Sbjct: 59  -PKYAHLNEPLHVLITAETPP---EEALAKAVEAIEELLKPAIEGGNDELKREQLRELAL 114

Query: 257 LNSNFR 262
           LN  +R
Sbjct: 115 LNGTYR 120

Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 defines an enlarged KH (hnRNP K) fold which is necessary and sufficient for BPS binding. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. Length = 120
>gnl|CDD|227503 COG5176, MSL5, Splicing factor (branch point binding protein) [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|197652 smart00322, KH, K homology RNA-binding domain Back     alignment and domain information
>gnl|CDD|238053 cd00105, KH-I, K homology RNA-binding domain, type I Back     alignment and domain information
>gnl|CDD|215657 pfam00013, KH_1, KH domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 287
KOG1588259 consensus RNA-binding protein Sam68 and related KH 100.0
cd02395120 SF1_like-KH Splicing factor 1 (SF1) K homology RNA 100.0
KOG0119 554 consensus Splicing factor 1/branch point binding p 100.0
COG5176269 MSL5 Splicing factor (branch point binding protein 99.98
cd0239361 PNPase_KH Polynucleotide phosphorylase (PNPase) K 98.64
PF0001360 KH_1: KH domain syndrome, contains KH motifs.; Int 98.5
cd0010564 KH-I K homology RNA-binding domain, type I. KH bin 98.4
smart0032269 KH K homology RNA-binding domain. 98.28
KOG1960 531 consensus Predicted RNA-binding protein, contains 98.22
cd0239462 vigilin_like_KH K homology RNA-binding domain_vigi 98.22
cd0239665 PCBP_like_KH K homology RNA-binding domain, PCBP_l 98.21
PF1301443 KH_3: KH domain 98.16
TIGR03665172 arCOG04150 arCOG04150 universal archaeal KH domain 97.83
PRK13763180 putative RNA-processing protein; Provisional 97.75
TIGR02696719 pppGpp_PNP guanosine pentaphosphate synthetase I/p 97.74
PRK13763180 putative RNA-processing protein; Provisional 97.69
TIGR03665172 arCOG04150 arCOG04150 universal archaeal KH domain 97.52
TIGR03591684 polynuc_phos polyribonucleotide nucleotidyltransfe 97.47
COG1094194 Predicted RNA-binding protein (contains KH domains 97.36
PLN00207891 polyribonucleotide nucleotidyltransferase; Provisi 97.07
KOG1676 600 consensus K-homology type RNA binding proteins [RN 96.43
PRK11824693 polynucleotide phosphorylase/polyadenylase; Provis 96.41
PRK04163235 exosome complex RNA-binding protein Rrp4; Provisio 96.32
KOG2193 584 consensus IGF-II mRNA-binding protein IMP, contain 96.19
KOG1676 600 consensus K-homology type RNA binding proteins [RN 96.16
KOG2874356 consensus rRNA processing protein [Translation, ri 95.77
KOG2814 345 consensus Transcription coactivator complex, P50 c 95.21
KOG2190 485 consensus PolyC-binding proteins alphaCP-1 and rel 94.54
KOG2193 584 consensus IGF-II mRNA-binding protein IMP, contain 94.19
KOG2191 402 consensus RNA-binding protein NOVA1/PASILLA and re 94.07
PRK12704 520 phosphodiesterase; Provisional 92.82
COG1185692 Pnp Polyribonucleotide nucleotidyltransferase (pol 92.77
TIGR03319 514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 92.75
KOG2191 402 consensus RNA-binding protein NOVA1/PASILLA and re 92.36
PRK00106 535 hypothetical protein; Provisional 91.38
cd0213461 NusA_KH NusA_K homology RNA-binding domain (KH). N 89.98
KOG2190485 consensus PolyC-binding proteins alphaCP-1 and rel 86.67
KOG1960 531 consensus Predicted RNA-binding protein, contains 84.68
KOG0336 629 consensus ATP-dependent RNA helicase [RNA processi 83.59
PF1318469 KH_5: NusA-like KH domain; PDB: 1HH2_P 1L2F_A 2ATW 83.19
>KOG1588 consensus RNA-binding protein Sam68 and related KH domain proteins [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=9.8e-66  Score=471.85  Aligned_cols=234  Identities=50%  Similarity=0.766  Sum_probs=197.5

Q ss_pred             CCCCCCCC-CCCCCCCCCCcCCCCCcchHHHHHHHHHHHHhhcCCCccchhHHHHhhhhhhhhhhccCCCCCCCCccccc
Q 023068            1 MSGLYNPN-FSPARAASPQIRSTPDINIDSQYLSELLAEHQKLGPFTQVLPICSRLLTQEIFRVSGMMPNQGFGDFDRLR   79 (287)
Q Consensus         1 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~YL~eLl~Ek~~L~~~~~~~~~~~rLl~~EI~RV~~~~~~~~~~d~d~~~   79 (287)
                      +.+.|++. ++|+...+++..+. .....++||.+|++||++|++|+. |+||.|||++||.||+..+++.+    + . 
T Consensus         3 ~~~~~~~~~~s~~~~~~~~~~~~-~~~~~~~yl~el~~e~~~l~~~~~-~~~~~rLL~~Ei~rv~~~~~~~~----~-~-   74 (259)
T KOG1588|consen    3 TGGGYTQEPGSPAGGGGPRYQPQ-LNEKASKYLSELLAERKSLSPFFP-FPHAERLLDEEIERVQTSGRQHG----S-K-   74 (259)
T ss_pred             CCCCCCCCCCCCcccCCCccccc-hhhHHHHHHHHHHhhHHhcCcccc-hHHHHHHHHHHHHHHHhhhhhcc----C-C-
Confidence            34566655 44444444444332 225579999999999999999998 99999999999999999865542    0 0 


Q ss_pred             cCCCCCCCccccccCcCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCcceeeEEEEecCCCCCCCCCcccceeCCC
Q 023068           80 HRSPSPMASSNLMSNVAGTGLGGWNGLPQERLGGPPGMTMDWQSAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPR  159 (287)
Q Consensus        80 ~~SP~p~~~~g~~~N~~~~~~~~~~~l~~Er~~~~~~~~~d~~~~p~~~~~~~vkk~~kv~IPv~~~P~~NfvGrIlGPr  159 (287)
                        .|                         ++..           ....++.+++|.++||+|||++||+|||||||||||
T Consensus        75 --~~-------------------------~~~~-----------~~~~~~~~~vk~~~Kv~vPv~~yP~fNFVGRILGPr  116 (259)
T KOG1588|consen   75 --EP-------------------------EELP-----------YADVYSGKPVKLTEKVLVPVKEYPKFNFVGRILGPR  116 (259)
T ss_pred             --Cc-------------------------hhcc-----------cccCccCCceeEEEEEEeccCCCCCCccccccccCC
Confidence              01                         1110           002345679999999999999999999999999999


Q ss_pred             chhHHHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEEEEecCchhHHHHHHHHHHHHHHHccCCC
Q 023068          160 GNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPV  239 (287)
Q Consensus       160 G~TlK~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVlIsa~~~~~~~~~rl~~A~e~Ie~LL~p~  239 (287)
                      |||+||||++|||||+||||||+||..|    ||++|++|+|+||++||||+|++++++++|++||++|+++|++||+|.
T Consensus       117 GnSlkrLe~eTgCki~IrGrgSmrD~~K----EE~lR~~p~yeHL~epLHVlIe~~~p~~ea~~rl~~AleeI~klL~P~  192 (259)
T KOG1588|consen  117 GNSLKRLEEETGCKIMIRGRGSMRDKAK----EEELRGDPGYEHLNEPLHVLIETEAPPAEAYARLAYALEEIKKLLVPD  192 (259)
T ss_pred             cchHHHHHHHHCCeEEEecCCcccchHH----HHHhhcCcchHHhCCCcEEEEEEeCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999999    999999999999999999999999999999999999999999999999


Q ss_pred             CcchHHHHHHHHHHHHHHcCc-cCCCCCCCCC---CCCCCCcccccccccC
Q 023068          240 DESQDYIKRQQLRELAMLNSN-FREDSPGPSG---SVSPFNSSGMKRAKTG  286 (287)
Q Consensus       240 ~e~~D~lK~~QL~ELA~lNGt-~r~~~~~~~~---~~spf~~~~~~~~~~~  286 (287)
                      +++.|  |++||+|||++||| +++.+..++|   +++||++.|+||+|++
T Consensus       193 ~e~~d--k~~QL~ELa~lngt~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~  241 (259)
T KOG1588|consen  193 HEDED--KREQLRELAILNGTYLRSESRKPSGGNGRGVPGNSAGGKRGKTG  241 (259)
T ss_pred             CCCch--HHHHHHHHhhcCCccccccccccCCCCCcCCCCCCCCcccccCC
Confidence            98877  99999999999999 5666655666   8999999999999985

>cd02395 SF1_like-KH Splicing factor 1 (SF1) K homology RNA-binding domain (KH) Back     alignment and domain information
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification] Back     alignment and domain information
>COG5176 MSL5 Splicing factor (branch point binding protein) [RNA processing and modification] Back     alignment and domain information
>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH) Back     alignment and domain information
>PF00013 KH_1: KH domain syndrome, contains KH motifs Back     alignment and domain information
>cd00105 KH-I K homology RNA-binding domain, type I Back     alignment and domain information
>smart00322 KH K homology RNA-binding domain Back     alignment and domain information
>KOG1960 consensus Predicted RNA-binding protein, contains KH domains [RNA processing and modification] Back     alignment and domain information
>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like Back     alignment and domain information
>cd02396 PCBP_like_KH K homology RNA-binding domain, PCBP_like Back     alignment and domain information
>PF13014 KH_3: KH domain Back     alignment and domain information
>TIGR03665 arCOG04150 arCOG04150 universal archaeal KH domain protein Back     alignment and domain information
>PRK13763 putative RNA-processing protein; Provisional Back     alignment and domain information
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase Back     alignment and domain information
>PRK13763 putative RNA-processing protein; Provisional Back     alignment and domain information
>TIGR03665 arCOG04150 arCOG04150 universal archaeal KH domain protein Back     alignment and domain information
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase Back     alignment and domain information
>COG1094 Predicted RNA-binding protein (contains KH domains) [General function prediction only] Back     alignment and domain information
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional Back     alignment and domain information
>KOG1676 consensus K-homology type RNA binding proteins [RNA processing and modification] Back     alignment and domain information
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional Back     alignment and domain information
>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional Back     alignment and domain information
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only] Back     alignment and domain information
>KOG1676 consensus K-homology type RNA binding proteins [RNA processing and modification] Back     alignment and domain information
>KOG2874 consensus rRNA processing protein [Translation, ribosomal structure and biogenesis; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2814 consensus Transcription coactivator complex, P50 component (LigT RNA ligase/phosphodiesterase family) [Transcription] Back     alignment and domain information
>KOG2190 consensus PolyC-binding proteins alphaCP-1 and related KH domain proteins [RNA processing and modification; General function prediction only] Back     alignment and domain information
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only] Back     alignment and domain information
>KOG2191 consensus RNA-binding protein NOVA1/PASILLA and related KH domain proteins [RNA processing and modification; General function prediction only] Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>KOG2191 consensus RNA-binding protein NOVA1/PASILLA and related KH domain proteins [RNA processing and modification; General function prediction only] Back     alignment and domain information
>PRK00106 hypothetical protein; Provisional Back     alignment and domain information
>cd02134 NusA_KH NusA_K homology RNA-binding domain (KH) Back     alignment and domain information
>KOG2190 consensus PolyC-binding proteins alphaCP-1 and related KH domain proteins [RNA processing and modification; General function prediction only] Back     alignment and domain information
>KOG1960 consensus Predicted RNA-binding protein, contains KH domains [RNA processing and modification] Back     alignment and domain information
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF13184 KH_5: NusA-like KH domain; PDB: 1HH2_P 1L2F_A 2ATW_A 1K0R_B 2ASB_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query287
2bl5_A140 Solution Structure Of The Kh-Qua2 Region Of The Xen 3e-30
1k1g_A131 Structural Basis For Recognition Of The Intron Bran 1e-17
>pdb|2BL5|A Chain A, Solution Structure Of The Kh-Qua2 Region Of The Xenopus Star-Gsg Quaking Protein Length = 140 Back     alignment and structure 
Iteration: 1

 Score =  128 bits (322), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 58/126 (46%), Positives = 92/126 (73%), Gaps = 4/126 (3%)
Query: 138 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRG 197
           +L +PV  YP+FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D  K    E++ RG
Sbjct: 5   KLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKK----EEQNRG 60
Query: 198 RPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAML 257
           +P +EHLN+ LH+LI  +   N  +++L++A E +++LL P  E +D +K+ +L ELA+L
Sbjct: 61  KPNWEHLNEDLHVLITVEDAQNRAELKLKRAVEEVKKLLVPAAEGEDSLKKMKLMELAIL 120
Query: 258 NSNFRE 263
           N  +R+
Sbjct: 121 NGTYRD 126
>pdb|1K1G|A Chain A, Structural Basis For Recognition Of The Intron Branch Site Rna By Splicing Factor 1 Length = 131 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query287
2bl5_A140 MGC83862 protein, quaking protein; STAR proteins, 8e-56
1k1g_A131 SF1-BO isoform; splicing, branch point sequence, p 9e-48
2yqr_A119 KIAA0907 protein; structure genomics, KH domain, s 4e-28
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 131 Back     alignment and structure
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query287
2bl5_A140 MGC83862 protein, quaking protein; STAR proteins, 100.0
1k1g_A131 SF1-BO isoform; splicing, branch point sequence, p 100.0
2yqr_A119 KIAA0907 protein; structure genomics, KH domain, s 99.96
3k6t_A60 Female germline-specific tumor suppressor GLD-1; Q 99.12
4dnn_A56 Protein quaking, MQKI, QKI; helix-turn-helix, hydr 99.05
2xa6_A41 KH domain-containing\,RNA-binding\,signal transduc 98.96
2opv_A85 KHSRP protein; KH domain, RNA binding protein, KSR 98.94
1dtj_A76 RNA-binding neurooncological ventral antigen 2; KH 98.89
1x4m_A94 FAR upstream element binding protein 1; KH domain, 98.75
2hh2_A107 KH-type splicing regulatory protein; KH-RNA bindin 98.68
1ec6_A87 RNA-binding protein NOVA-2; KH domain, alpha-beta 98.66
1zzk_A82 Heterogeneous nuclear ribonucleoprotein K; KH domi 98.65
1x4n_A92 FAR upstream element binding protein 1; KH domain, 98.65
1we8_A104 Tudor and KH domain containing protein; structural 98.63
2p2r_A76 Poly(RC)-binding protein 2; protein-DNA complex, R 98.62
2dgr_A83 Ring finger and KH domain-containing protein 1; st 98.62
1vig_A71 Vigilin; RNA-binding protein, ribonucleoprotein; N 98.6
1wvn_A82 Poly(RC)-binding protein 1; KH domain, RNA binding 98.58
2ctk_A104 Vigilin; K homology type I domain, RNA-binding, ce 98.57
2axy_A73 Poly(RC)-binding protein 2; protein-DNA complex, D 98.57
2cte_A94 Vigilin; K homology type I domain, RNA-binding, ce 98.56
2hh3_A106 KH-type splicing regulatory protein; KH-RNA bindin 98.55
2ctl_A97 Vigilin; K homology type I domain, RNA-binding, ce 98.52
1j5k_A89 Heterogeneous nuclear ribonucleoprotein K; single- 98.51
2ctm_A95 Vigilin; K homology type I domain, RNA-binding, ce 98.42
3krm_A163 Insulin-like growth factor 2 mRNA-binding protein 98.27
1j4w_A174 FUSE binding protein; single-stranded DNA binding 98.22
2jvz_A164 KH type-splicing, FAR upstream element-binding pro 98.17
2jzx_A160 Poly(RC)-binding protein 2; PCBP2, KH domains, RNA 98.13
2jvz_A164 KH type-splicing, FAR upstream element-binding pro 98.07
2ctj_A95 Vigilin; K homology type I domain, RNA-binding, ce 98.05
2jzx_A160 Poly(RC)-binding protein 2; PCBP2, KH domains, RNA 98.02
1j4w_A174 FUSE binding protein; single-stranded DNA binding 97.96
3krm_A163 Insulin-like growth factor 2 mRNA-binding protein 97.94
2anr_A178 Neuro-oncological ventral antigen 1; protein-RNA c 97.93
2cpq_A91 FragIle X mental retardation syndrome related prot 97.9
2anr_A178 Neuro-oncological ventral antigen 1; protein-RNA c 97.89
1tua_A191 Hypothetical protein APE0754; structural genomics, 97.77
3u1k_A630 Polyribonucleotide nucleotidyltransferase 1, MITO; 97.76
2e3u_A219 PH-DIM2P, hypothetical protein PH1566; PRE-ribosom 97.62
2e3u_A219 PH-DIM2P, hypothetical protein PH1566; PRE-ribosom 97.14
2qnd_A144 FMR1 protein; KH domain, eukaryotic KH domains, ta 96.78
4aid_A726 Polyribonucleotide nucleotidyltransferase; transfe 96.73
2ctf_A102 Vigilin; K homology type I domain, RNA-binding, ce 96.16
3n89_A 376 Defective in GERM LINE development protein 3, ISO; 95.64
3cdi_A723 Polynucleotide phosphorylase; mRNA turnover, RNAse 94.17
2qnd_A144 FMR1 protein; KH domain, eukaryotic KH domains, ta 93.65
1e3p_A757 Guanosine pentaphosphate synthetase; polyribonucle 92.05
3v69_A140 Protein filia; RNA-binding, embryogenesis, KH doma 90.56
1tua_A191 Hypothetical protein APE0754; structural genomics, 90.2
3n89_A376 Defective in GERM LINE development protein 3, ISO; 86.43
4fxw_B124 Splicing factor 1; UHM, protein binding, phosphory 84.45
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1 Back     alignment and structure
Probab=100.00  E-value=3.7e-50  Score=340.63  Aligned_cols=130  Identities=45%  Similarity=0.845  Sum_probs=125.3

Q ss_pred             eEEEEecCCCCCCCCCcccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEEEEe
Q 023068          135 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIEA  214 (287)
Q Consensus       135 k~~kv~IPv~~~P~~NfvGrIlGPrG~TlK~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVlIsa  214 (287)
                      .++|||||+++||+|||||+||||||+|+|+||++|||||.||||||+||+++    |+.++|+|+|+|++|||||+|+|
T Consensus         2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~----e~~~~g~~~~~~~~epLHV~Isa   77 (140)
T 2bl5_A            2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKK----EEQNRGKPNWEHLNEDLHVLITV   77 (140)
T ss_dssp             EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHH----HHTSTTSHHHHTTTSCCEEEEEE
T ss_pred             ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccc----cccccCCCCccccCCCcEEEEEe
Confidence            47899999999999999999999999999999999999999999999999888    88899999999999999999999


Q ss_pred             cCchhHHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHcCccCCCCCCC
Q 023068          215 DLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNFREDSPGP  268 (287)
Q Consensus       215 ~~~~~~~~~rl~~A~e~Ie~LL~p~~e~~D~lK~~QL~ELA~lNGt~r~~~~~~  268 (287)
                      ++++++|+++|++|+++|++||.|++|++|++|++||+|||+||||||++....
T Consensus        78 ~~~~~~~~~~l~~A~~~I~~lL~p~~e~~de~K~~QL~eLA~lNGt~r~~~~~~  131 (140)
T 2bl5_A           78 EDAQNRAELKLKRAVEEVKKLLVPAAEGEDSLKKMKLMELAILNGTYRDANLKS  131 (140)
T ss_dssp             CSCCHHHHHHHHHHHHHHHHHSSCCSSSSSHHHHHHHTGGGSSSTTTSGGGGSC
T ss_pred             cCchhhHHHHHHHHHHHHHHHCCCCCcchhHHHHHHHHHHHHhcCCcCCCcccc
Confidence            999999999999999999999999999999999999999999999999987543
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3k6t_A Female germline-specific tumor suppressor GLD-1; QUA1 homodimerization domain, helix-turn-helix motif, hydrophobic homodimer interface; 2.04A {Caenorhabditis elegans} PDB: 3kbl_A Back     alignment and structure
>4dnn_A Protein quaking, MQKI, QKI; helix-turn-helix, hydrophobic homodimer interface, perpendic stacking of protomers, developmental protein, RNA-binding; HET: MSE; 2.10A {Mus musculus} Back     alignment and structure
>2xa6_A KH domain-containing\,RNA-binding\,signal transduction-associated protein 1; transcription, STAR proteins, CD44, cell cycle; NMR {Homo sapiens} Back     alignment and structure
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens} Back     alignment and structure
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A Back     alignment and structure
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 Back     alignment and structure
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A Back     alignment and structure
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A Back     alignment and structure
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1 Back     alignment and structure
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens} Back     alignment and structure
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A Back     alignment and structure
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A* Back     alignment and structure
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A Back     alignment and structure
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens} Back     alignment and structure
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1 Back     alignment and structure
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens} Back     alignment and structure
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens} Back     alignment and structure
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1 Back     alignment and structure
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens} Back     alignment and structure
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A* Back     alignment and structure
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A* Back     alignment and structure
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1 Back     alignment and structure
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens} Back     alignment and structure
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B Back     alignment and structure
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B Back     alignment and structure
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A Back     alignment and structure
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A Back     alignment and structure
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans} Back     alignment and structure
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A Back     alignment and structure
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A Back     alignment and structure
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A Back     alignment and structure
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus} Back     alignment and structure
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1 Back     alignment and structure
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans} Back     alignment and structure
>4fxw_B Splicing factor 1; UHM, protein binding, phosphorylat; HET: SEP; 2.29A {Homo sapiens} PDB: 4fxx_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 287
d2bl5a1134 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {Afric 1e-56
d1k1ga_122 d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo s 6e-46
d1dtja_74 d.51.1.1 (A:) Neuro-oncological ventral antigen 2, 2e-04
d2ctka191 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [T 3e-04
d1e3ha454 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/ 4e-04
d2je6i369 d.51.1.1 (I:153-221) Exosome complex RNA-binding p 0.001
d2ctea181 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [T 0.001
d2z0sa287 d.51.1.1 (A:148-234) Exosome complex RNA-binding p 0.003
d1viga_71 d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId 0.004
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 134 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Quaking protein A (Xqua)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score =  176 bits (448), Expect = 1e-56
 Identities = 59/133 (44%), Positives = 95/133 (71%), Gaps = 5/133 (3%)

Query: 138 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRG 197
           +L +PV  YP+FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D  K    E++ RG
Sbjct: 5   KLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKK----EEQNRG 60

Query: 198 RPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAML 257
           +P +EHLN+ LH+LI  +   N  +++L++A E +++LL P  E +D +K+ +L ELA+L
Sbjct: 61  KPNWEHLNEDLHVLITVEDAQNRAELKLKRAVEEVKKLLVPAAEGEDSLKKMKLMELAIL 120

Query: 258 NSNFREDS-PGPS 269
           N  +R+ +   P+
Sbjct: 121 NGTYRDANLKSPA 133
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]} Length = 74 Back     information, alignment and structure
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 91 Back     information, alignment and structure
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6 {Streptomyces antibioticus [TaxId: 1890]} Length = 54 Back     information, alignment and structure
>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]} Length = 69 Back     information, alignment and structure
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 81 Back     information, alignment and structure
>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]} Length = 87 Back     information, alignment and structure
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 71 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query287
d2bl5a1134 Quaking protein A (Xqua) {African clawed frog (Xen 100.0
d1k1ga_122 RNA splicing factor 1 {Human (Homo sapiens) [TaxId 100.0
d1dtja_74 Neuro-oncological ventral antigen 2, nova-2, KH3 { 98.85
d1j4wa271 Far upstream binding element, FBP {Human (Homo sap 98.74
d1x4ma181 Far upstream binding element, FBP {Mouse (Mus musc 98.66
d1we8a_104 Tudor and KH domain containing protein, Tdrkh {Mou 98.66
d1zzka175 HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} 98.59
d1j4wa174 Far upstream binding element, FBP {Human (Homo sap 98.59
d1wvna170 Poly(RC)-binding protein 1 {Human (Homo sapiens) [ 98.54
d1x4na179 Far upstream binding element, FBP {Mouse (Mus musc 98.54
d2cpqa178 Fragile X mental retardation syndrome related prot 98.53
d1tuaa2104 Hypothetical protein APE0754 {Aeropyrum pernix [Ta 98.52
d2ctka191 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 98.5
d2ctma181 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 98.43
d2z0sa287 Exosome complex RNA-binding protein 1, ECR1 {Aerop 98.41
d2axya171 Poly(RC)-binding protein 2 {Human (Homo sapiens) [ 98.38
d1viga_71 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 98.37
d2ba0a384 Exosome complex RNA-binding protein 1, ECR1 {Archa 98.35
d2je6i369 Exosome complex RNA-binding protein 1, ECR1 {Sulfo 98.34
d2ctea181 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 98.31
d2ctla184 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 98.28
d1tuaa184 Hypothetical protein APE0754 {Aeropyrum pernix [Ta 98.25
d2ctja182 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 98.04
d1e3ha454 Polynucleotide phosphorylase/guanosine pentaphosph 97.99
d2ctfa190 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 97.78
d2ja9a285 Ribosomal RNA-processing protein 40, RRP40 {Saccha 89.38
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Quaking protein A (Xqua)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=100.00  E-value=1.5e-51  Score=344.85  Aligned_cols=130  Identities=45%  Similarity=0.848  Sum_probs=125.1

Q ss_pred             eeEEEEecCCCCCCCCCcccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEEEE
Q 023068          134 KRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIE  213 (287)
Q Consensus       134 kk~~kv~IPv~~~P~~NfvGrIlGPrG~TlK~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVlIs  213 (287)
                      |.++|||||+++||+|||||+||||||+|+|+||++|||||+||||||+||+++    ++.++++++|+|++|||||+|+
T Consensus         1 kl~eKv~IP~~~~P~~NfvG~IiGPrG~t~K~le~eTg~kI~IrGrGS~k~~~~----~~~~~~~~~~~~~~epLHv~I~   76 (134)
T d2bl5a1           1 QLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKK----EEQNRGKPNWEHLNEDLHVLIT   76 (134)
T ss_dssp             CEEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHH----HHTSTTSHHHHTTTSCCEEEEE
T ss_pred             CcceEEeCCCCCCCCCCeeEEEECCCCchHHHHHHHHCCEEEEEecCCCcCccc----cccccCCCCCcCCCCCCEEEEE
Confidence            568899999999999999999999999999999999999999999999999888    8888999999999999999999


Q ss_pred             ecCchhHHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHcCccCCCCCC
Q 023068          214 ADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNFREDSPG  267 (287)
Q Consensus       214 a~~~~~~~~~rl~~A~e~Ie~LL~p~~e~~D~lK~~QL~ELA~lNGt~r~~~~~  267 (287)
                      |++++.+|+++|++|+++|++||.|+++++|++|++||+|||+||||||+++..
T Consensus        77 a~~~~~~a~~kl~~A~~~I~~lL~p~~e~~de~k~~QL~eLa~lNGt~r~~~~~  130 (134)
T d2bl5a1          77 VEDAQNRAELKLKRAVEEVKKLLVPAAEGEDSLKKMKLMELAILNGTYRDANLK  130 (134)
T ss_dssp             ECSCCHHHHHHHHHHHHHHHHHSSCCSSSSSHHHHHHHTGGGSSSTTTSGGGGS
T ss_pred             ecCcHHHHHHHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHhcCccccccCC
Confidence            999999999999999999999999999999999999999999999999998743
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome related protein 1, FXR1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6 {Streptomyces antibioticus [TaxId: 1890]} Back     information, alignment and structure
>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ja9a2 d.51.1.1 (A:152-236) Ribosomal RNA-processing protein 40, RRP40 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure