Citrus Sinensis ID: 023075

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------
Protein Sequence
MADTQEIEETPSEAHSGDASQKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI
Secondary Structure (PSIPRED)
cccHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcccccccHHHHHHHHHHHcccEEEEEcccccEEEccccccccccccccEEEEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHcccEEEEEcccccEEEccEccccccccccccEEEEEEHHcccccccccccccc
Coil and Loop (DISEMBL)
madtqeieetpseahsgdasqkKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASlgysssngneksnLDNLVKAVAGVTVisqhdqakpskgtkRREKRAQQEAAREQRIQEEQSNivsdrtvedeklekklgplgltvndikpdghclYRAVEDQlahlsggeesAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHImiysgsfpdvemgkeysnggsdssgsSIILSYHRhafglgehynsvipi
Flexible Loop (DISEMBL)
madtqeieetpseahsgdasqkkqETRDEMLSRHRkeisqlqnkETELKKaaakgskaeqkakkkqVEEEISRLSAKLREKHAKELAslgysssngneKSNLDNLVKAVAGVTVisqhdqakpskgtkrrEKRAQQEAAreqriqeeqsnivsdrtvedeklekklgplgltvndikPDGHCLYRAVEDQLAHLSGGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFglgehynsvipi
Low Complexity Region (SEG)
MADTQEIEETPSEAHSGDASQKKQETRDEMLSRHRKEISQLQNKETelkkaaakgskaeqkakkkqveeeISRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKrrekraqqeaareqriqeeqSNIVSDRTVEDeklekklgplglTVNDIKPDGHCLYRAVEDQLAHLSGGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYsnggsdssgssIILSYHRHAFGLGEHYNSVIPI
Disordered region (IsUnstruct)
********************************************************************************************************LVKAVAGVTVI****************************************************PLGLTVNDIKPDGHCLYRAVEDQLAH*************RFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPD******************IILSYHRHAFGLGEHYN*****
Disordered Region (DISOPRED)
*************************************************************************************************************************************************************EDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEY******SSGSSIILSYHRHAFGLGEHYNSVIPI
Disordered Region (DISEMBL)
***********************************************************************SRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVIS****************************QEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAH*************RFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKE*********GSSIILSYHRHAFGLGEHYNSVIPI
Disordered Region (DISPRO)
***************************DEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLG*****************************************************IQ****NIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADTQEIEETPSEAHSGDASQKKQETRDEMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	287	2.2.26 [Sep-21-2011]
Q7ZV00	293	OTU domain-containing pro	yes	no	0.850	0.832	0.361	7e-35
Q5ZIP6	302	OTU domain-containing pro	yes	no	0.843	0.801	0.354	7e-35
Q6GM06	294	OTU domain-containing pro	N/A	no	0.836	0.816	0.344	4e-34
Q8N6M0	293	OTU domain-containing pro	yes	no	0.818	0.802	0.355	5e-34
Q5M8L0	294	OTU domain-containing pro	yes	no	0.829	0.809	0.335	8e-34
Q8K2H2	294	OTU domain-containing pro	yes	no	0.839	0.819	0.328	6e-31
Q6IE21	290	OTU domain-containing pro	no	no	0.832	0.824	0.308	4e-30
Q7L8S5	288	OTU domain-containing pro	no	no	0.818	0.815	0.309	4e-27
Q9UUK3	324	Ubiquitin thioesterase ot	yes	no	0.888	0.787	0.246	2e-20
P38747	307	OTU domain-containing pro	yes	no	0.888	0.830	0.255	1e-14

>sp|Q7ZV00|OTU6B_DANRE OTU domain-containing protein 6B OS=Danio rerio GN=otud6b PE=2 SV=1

 Score =  147 bits (372), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 108/299 (36%), Positives = 150/299 (50%), Gaps = 55/299 (18%)

Query: 25  ETRDEMLSR-HRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHA 83
           ET +E L++ HRKE   LQ K   +K A  K  K     ++KQ+ E+I++L A+L +KH 
Sbjct: 5   ETAEEQLAKQHRKEKKDLQAKIQSMKNAVPKNDKK----RRKQLTEDIAKLEAELSQKHE 60

Query: 84  KELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSK------GTKRREKRAQQE 137
            EL     SS        ++ +  A+  ++V +  +Q+ PSK        KRR+K+A  E
Sbjct: 61  NELKLQNTSS--------VEEVSDALDSMSVANHEEQSDPSKQSRTSKAQKRRDKKAALE 112

Query: 138 AAREQRIQE-EQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAH--L 194
             RE RI E E  N+   R  E  KL +KL    L + +I  DGHC+YRAVE QL    L
Sbjct: 113 KEREMRIAEAEVENLSGSRHQEGLKLREKLVERHLQIKEISSDGHCMYRAVEHQLTERGL 172

Query: 195 SGGEESAQSQV--------------------------ERFENYCKEVESTAAWGGELELR 228
           + G +  + Q                           E FE YC +V  TAAWGG+LEL+
Sbjct: 173 ALGLKELRDQTAQYMRSHADDFMPFLTNPNTGDMYTAEEFEKYCSDVADTAAWGGQLELK 232

Query: 229 ALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI 287
           AL+  L+  I +     P + +G+EY           I L Y RHA+GLGEHYNSV P+
Sbjct: 233 ALSQVLQLPIEVIQADSPCITIGEEYDK-------PKITLIYMRHAYGLGEHYNSVEPL 284

Danio rerio (taxid: 7955)

>sp|Q5ZIP6|OTU6B_CHICK OTU domain-containing protein 6B OS=Gallus gallus GN=OTUD6B PE=2 SV=1

 Score =  147 bits (372), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 102/288 (35%), Positives = 149/288 (51%), Gaps = 46/288 (15%)

Query: 29  EMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELAS 88
           +++ R R+E  +LQ K   +K A  K  K     ++KQ+ EE+++L A+L +KH +EL  
Sbjct: 17  QLVKRQRREKRELQAKIQGMKNAVPKNDKK----RRKQLAEEVAKLEAELEQKHKEELKQ 72

Query: 89  LGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQ---AKPSKGTKRREKRAQQE-AAREQRI 144
           L  +     E++ +D++   VA   +  +  Q    + SK  KRREK+A  E    E+  
Sbjct: 73  LKEAMP---EQNKIDSIADGVANFELEGREQQIQHPRISKAQKRREKKAALEKEREERIA 129

Query: 145 QEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLA--HLSGGEESAQ 202
           + E  N+   R +E +KL   L    L +  I  DGHC+YRA+EDQL   H S    + +
Sbjct: 130 EAEIENLTGARHLESQKLASLLAARHLEIKQIPSDGHCMYRAIEDQLKDHHNSWTVATLR 189

Query: 203 SQV--------------------------ERFENYCKEVESTAAWGGELELRALTHCLRK 236
           +Q                           E FE YC ++ +TAAWGG+LELRAL+H L+ 
Sbjct: 190 NQTAKYIHSHFDDFLPFLTNPNTGDMYSKEEFEKYCDDIANTAAWGGQLELRALSHILQT 249

Query: 237 HIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSV 284
            I +     P + +G+EY       SG  IIL Y RHA+GLGEHYNSV
Sbjct: 250 PIEVVQMDSPSIIVGEEY-------SGKPIILVYMRHAYGLGEHYNSV 290

Gallus gallus (taxid: 9031)

>sp|Q6GM06|OTU6B_XENLA OTU domain-containing protein 6B OS=Xenopus laevis GN=otud6b PE=2 SV=1

 Score =  145 bits (365), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 99/287 (34%), Positives = 148/287 (51%), Gaps = 47/287 (16%)

Query: 30  MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL 89
           ++ + RKE  ++Q K   +K +  K  K     ++KQ+ E+I++L A++  +H +EL +L
Sbjct: 13  LIKQQRKEKKEVQAKIQCMKNSVPKNDKK----RRKQMTEDIAKLEAEVEARHKEELEAL 68

Query: 90  GYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKP--SKGTKRREKRAQQEAAREQRIQE- 146
               +   + S++ N    V  + + S+    +P  SK  KRREK+A QE  R+ RI E 
Sbjct: 69  AQKPTEPTQVSSITN---GVTSLDLGSEEPVQQPRVSKAQKRREKKAAQEKERDDRIAEA 125

Query: 147 EQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVE------------------ 188
           E +N+   R +E +KL + L    L +  I  DGHC+YRA+E                  
Sbjct: 126 EIANLSGARHLESQKLAQILAERELQIRQIPSDGHCMYRAIEHQLNEQGNSLTVANLRSQ 185

Query: 189 ----------DQLAHLSGGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHI 238
                     D L  L+          E F+ YC ++ +T AWGG+LELRAL+H L+  I
Sbjct: 186 TADYMQKRAEDFLPFLTNSSTGDMYTQEEFQKYCTDIVNTPAWGGQLELRALSHILKTPI 245

Query: 239 -MIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSV 284
            +I + S P V +G+EYSN         I L Y RHA+GLGEHYNSV
Sbjct: 246 EVIQAESLPIV-IGEEYSN-------KPITLVYMRHAYGLGEHYNSV 284

Xenopus laevis (taxid: 8355)

>sp|Q8N6M0|OTU6B_HUMAN OTU domain-containing protein 6B OS=Homo sapiens GN=OTUD6B PE=1 SV=1

 Score =  145 bits (365), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 100/281 (35%), Positives = 149/281 (53%), Gaps = 46/281 (16%)

Query: 33  RHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLGYS 92
           RHRKE  +LQ K   +K A  K  K     ++KQ+ E++++L  ++ +KH +EL  L  +
Sbjct: 18  RHRKEKKELQAKIQGMKNAVPKNDKK----RRKQLTEDVAKLEKEMEQKHREELEQLKLT 73

Query: 93  SSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQE-AAREQRIQEEQSNI 151
           +    +++ +D++  AV    ++ ++   + SK  KRREK+A  E    E+  + E  N+
Sbjct: 74  T----KENKIDSV--AVNISNLVLENQPPRISKAQKRREKKAALEKEREERIAEAEIENL 127

Query: 152 VSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQL----------AHLSGGEESA 201
              R +E EKL + L    L +  I  DGHC+Y+A+EDQL          A  S   E  
Sbjct: 128 TGARHMESEKLAQILAARQLEIKQIPSDGHCMYKAIEDQLKEKDCALTVVALRSQTAEYM 187

Query: 202 QSQVE------------------RFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSG 243
           QS VE                   F+ YC+++ +TAAWGG+LELRAL+H L+  I I   
Sbjct: 188 QSHVEDFLPFLTNPNTGDMYTPEEFQKYCEDIVNTAAWGGQLELRALSHILQTPIEIIQA 247

Query: 244 SFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSV 284
             P + +G+EYS          +IL Y RHA+GLGEHYNSV
Sbjct: 248 DSPPIIVGEEYSK-------KPLILVYMRHAYGLGEHYNSV 281

Homo sapiens (taxid: 9606)

>sp|Q5M8L0|OTU6B_XENTR OTU domain-containing protein 6B OS=Xenopus tropicalis GN=otud6b PE=2 SV=1

 Score =  144 bits (363), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 97/289 (33%), Positives = 142/289 (49%), Gaps = 51/289 (17%)

Query: 30  MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL 89
           ++ +HRKE   LQ K   +K +  K  K     ++KQ+ E+I++L A L  +H +EL + 
Sbjct: 13  LIKQHRKEKRDLQAKIQSMKNSVPKNDKK----RRKQLTEDIAKLEADLDVRHKEELEAF 68

Query: 90  GYSSSNGNEKSNLDNLVKAVAGVTVISQHDQA-----KPSKGTKRREKRAQQEAAREQRI 144
                   + S + N      GVT +   ++A     + SK  KRREK+A QE  R++RI
Sbjct: 69  AQKQPEPTQVSGITN------GVTSLDLGNEAPVQQPRQSKAQKRREKKAAQEKERDERI 122

Query: 145 QE-EQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVE--------------- 188
            E E +N+   R +E +KL + L    L +  I  DGHC+YRA+E               
Sbjct: 123 AEAEIANLSGARHLESQKLARILAERELQIRQIPSDGHCMYRAIEHQLRERGNDLTVANL 182

Query: 189 -------------DQLAHLSGGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLR 235
                        D L  L+          E F  YC ++ +T AWGG+LELRAL+H L+
Sbjct: 183 RSQTADYMQNHAEDFLPFLTNSSTGDMYTQEEFLKYCTDIVNTPAWGGQLELRALSHILK 242

Query: 236 KHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSV 284
             I +       + +G+EYS+        +I L Y RHA+GLGEHYNSV
Sbjct: 243 TAIEVIQAESSPIVIGEEYSS-------KAITLVYMRHAYGLGEHYNSV 284

Xenopus tropicalis (taxid: 8364)

>sp|Q8K2H2|OTU6B_MOUSE OTU domain-containing protein 6B OS=Mus musculus GN=Otud6b PE=2 SV=1

 Score =  134 bits (338), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 94/286 (32%), Positives = 143/286 (50%), Gaps = 45/286 (15%)

Query: 28  DEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELA 87
           ++++ RHRKE  +LQ K   +K A  K  K     ++KQ+ E++++L  ++ +KH +EL 
Sbjct: 13  EQLVRRHRKEKKELQAKIQGMKNAVPKNDKK----RRKQLTEDVAKLEREMEQKHREELE 68

Query: 88  SLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQE-AAREQRIQE 146
            L   +      S +D++  AV    ++ ++   + SK  KRREK+A  E    E+  + 
Sbjct: 69  QLKQLTFKD---SKIDSV--AVNISNLVLENQPPRISKAQKRREKKAALEKEREERIAEA 123

Query: 147 EQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQL--------------- 191
           E  N+   R +E EKL + L    L +  I  DGHC+Y A+EDQL               
Sbjct: 124 EIENLSGARHLESEKLAQILAARELEIKQIPSDGHCMYGALEDQLREQDCALTVASLRRQ 183

Query: 192 -------------AHLSGGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHI 238
                          L+          E F  YC ++ +TAAWGG+LELRAL+H L+  I
Sbjct: 184 TAEYMQTHSDDFLPFLTNPSTGDMYTPEEFGKYCDDIVNTAAWGGQLELRALSHILQTPI 243

Query: 239 MIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSV 284
            I     P + +G+EY         + ++L Y RHA+GLGEHYNSV
Sbjct: 244 EILQADAPPIIVGEEYPR-------NPLVLVYMRHAYGLGEHYNSV 282

Mus musculus (taxid: 10090)

>sp|Q6IE21|OTU6A_MOUSE OTU domain-containing protein 6A OS=Mus musculus GN=Otud6a PE=2 SV=1

 Score =  132 bits (331), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 88/285 (30%), Positives = 143/285 (50%), Gaps = 46/285 (16%)

Query: 30  MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL 89
           ++ RH +E  +LQ     LK +  K  K     ++KQ+  +ISRL A++ ++H +EL   
Sbjct: 11  VIRRHYREKRELQAHIQTLKASVPKNDKG----RRKQMLADISRLEAEMEQRHKQELEKF 66

Query: 90  GYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAAREQRIQEEQS 149
           G      N  S++D++   +  + +  ++   +P K  KRR++RA QE   ++R+   Q+
Sbjct: 67  G-----ENPDSSVDSVTADLEKMNL--ENMPPRPPKAQKRRDRRAHQERRHQERMPAAQA 119

Query: 150 -NIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGEESAQSQV--- 205
             + ++R  E+EK+   LG   L +  I  DGHC+YRA++DQL   S   ES + +    
Sbjct: 120 EQLAANRREEEEKVAAILGAKNLEMKTIPADGHCMYRAIQDQLV-FSVTIESLRYRTAYY 178

Query: 206 -----------------------ERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYS 242
                                  E F  YC ++   A+WGG+LELRAL+H L+  I +  
Sbjct: 179 MRKHIDDFLPFFTEPEAGNFYTREDFLRYCDDIVHNASWGGQLELRALSHVLQTPIEVVQ 238

Query: 243 GSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI 287
            + P + +G+EY+          + L Y  +A   GEHYNSV PI
Sbjct: 239 ANSPTIVIGEEYTR-------KPVTLVYLHYACDFGEHYNSVKPI 276

Mus musculus (taxid: 10090)

>sp|Q7L8S5|OTU6A_HUMAN OTU domain-containing protein 6A OS=Homo sapiens GN=OTUD6A PE=2 SV=1

 Score =  122 bits (305), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 89/288 (30%), Positives = 143/288 (49%), Gaps = 53/288 (18%)

Query: 30  MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL 89
           +L RH++E  +LQ +   LK +  K  K     K+KQ+ ++++R+ A++ +KH +EL   
Sbjct: 11  ILRRHQRERQELQAQIRSLKNSVPKTDKT----KRKQLLQDVARMEAEMAQKHRQELEKF 66

Query: 90  GYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAAREQR----IQ 145
                   + S+++++V+ +A + +     + +P + +K   KR + E+   +R     Q
Sbjct: 67  -------QDDSSIESVVEDLAKMNL-----ENRPPRSSKAHRKRERMESEERERQESIFQ 114

Query: 146 EEQS-NIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAH----------- 193
            E S ++   +  E+EKL   LG  GL +  I  DGHC+YRA++DQL             
Sbjct: 115 AEMSEHLAGFKREEEEKLAAILGARGLEMKAIPADGHCMYRAIQDQLVFSVSVEMLRCRT 174

Query: 194 --------------LSGGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIM 239
                          S  E S     + F  YC  +  T AWGG+LELRAL+H L+  I 
Sbjct: 175 ASYMKKHVDEFLPFFSNPETSDSFGYDDFMIYCDNIVRTTAWGGQLELRALSHVLKTPIE 234

Query: 240 IYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI 287
           +     P + +G+EY           IIL Y R+A+ LGEHYNSV P+
Sbjct: 235 VIQADSPTLIIGEEYVK-------KPIILVYLRYAYSLGEHYNSVTPL 275

Homo sapiens (taxid: 9606)

>sp|Q9UUK3|OTU2_SCHPO Ubiquitin thioesterase otu2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=otu2 PE=4 SV=1

 Score =  100 bits (248), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 151/312 (48%), Gaps = 57/312 (18%)

Query: 21  QKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLRE 80
           ++K +  +E+LS+ R+E  +LQ+K T L+K   +G+K +++A    ++++IS++ A L +
Sbjct: 19  KRKSKKMEELLSKQREECKELQSKITNLRKQLKEGNKKQKRA----LQQKISQMEADLSQ 74

Query: 81  KHAKELASLGYSSSNGNEKSN---LDNLVKAVAGVTVIS-------------QHDQAKPS 124
           KHA E   L       NE      L+ L++ +    + +             ++   +P 
Sbjct: 75  KHATERQKLDKGDEETNETQQEDLLNTLLQQMEDTKITTAEKSSVQSSLNTKENTPQQPK 134

Query: 125 KGTKRREKRAQQEAAREQRIQEEQSNIVSDRTV-----EDEKLEKKLGPLGLTVNDIKPD 179
           K   R+++R ++  A E +   EQ+ + S++       E +K  K L   GL   DI  D
Sbjct: 135 KSRNRQKERLERRKA-EMKKMSEQAELESEKMADLKNEEKKKFSKILEEAGLVAVDIPAD 193

Query: 180 GHCLYRAVEDQLAHLSGGEESAQS-----------QVERFE---------------NYCK 213
           G+CL+ ++  QL +    + ++Q+             E+FE               +YC 
Sbjct: 194 GNCLFASISHQLNYHHNVKLNSQALRNKSADYVLKHCEQFEGFLLDEESGEVLPVSDYCN 253

Query: 214 EVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRH 273
           E+ + + WG ++E++AL + L   + +Y+   P ++      N  +      + ++Y++H
Sbjct: 254 EIRNNSKWGSDIEIQALANSLEVPVHVYNTEGPVLKF-----NPSTVKFEKPLCIAYYQH 308

Query: 274 AFGLGEHYNSVI 285
            FGLG HYNS++
Sbjct: 309 LFGLGAHYNSLL 320

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P38747|OTU2_YEAST OTU domain-containing protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=OTU2 PE=1 SV=1

 Score = 80.9 bits (198), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 140/317 (44%), Gaps = 62/317 (19%)

Query: 16  SGDASQKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLS 75
           +G  S +  E  +++L+RHRKE   LQNK T +KK A        K+K+K+V  +   L 
Sbjct: 2   TGMESGENLENMEDILARHRKENKDLQNKITGMKKQAT-------KSKRKEVNSKCLDLQ 54

Query: 76  AKLREKHAKELASLGYSSSNGNEKSNLDNLV--KAVAGVTV-------ISQHDQAKPSKG 126
            KL+ K   E+     +++   +    D +   K +  +++        +   Q +    
Sbjct: 55  DKLKTKQENEIRDWKIANNEVFDAEQEDEVTPEKLLEQLSISRDEKEQQNVPVQQQQQGQ 114

Query: 127 TKRREKRAQQEAAREQ----RIQEEQSNIVSD----RTVEDEKLEKKLGPLGLTVNDIKP 178
           TK+R  R ++  A+      +++EE +   S     + +E E +++      L   DI+P
Sbjct: 115 TKKRRNRQKERLAKRDAAIAKMKEEAALEASKQPDLKKMEQESIDQLCELKKLKQFDIQP 174

Query: 179 DGHCLYRAVEDQLAHLSGGEESAQS-------------------------------QVER 207
           DGHCL+ ++ DQL      ++  Q                                +++ 
Sbjct: 175 DGHCLFASILDQLKLRHDPKKLDQDMDVMKLRWLSCNYVQEHRDDFIPYLFDEETMKMKD 234

Query: 208 FENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSII 267
            + Y KE+E TA WGGE+E+ AL+H     I I     P     + Y+  G       + 
Sbjct: 235 IDEYTKEMEHTAQWGGEIEILALSHVFDCPISILMSGRP----IQVYNECG---KNPELK 287

Query: 268 LSYHRHAFGLGEHYNSV 284
           L Y++H++ LGEHYNS+
Sbjct: 288 LVYYKHSYALGEHYNSL 304

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	287
224131236	326	predicted protein [Populus trichocarpa]	0.996	0.877	0.686	1e-114
255571935	325	OTU domain-containing protein 6B, putati	0.989	0.873	0.696	1e-113
449436806	319	PREDICTED: OTU domain-containing protein	0.989	0.890	0.661	1e-112
449520871	325	PREDICTED: LOW QUALITY PROTEIN: OTU doma	0.926	0.818	0.680	1e-110
388521917	326	unknown [Medicago truncatula]	0.926	0.815	0.672	1e-109
357511169	335	OTU domain-containing protein 6B [Medica	0.926	0.794	0.668	1e-108
356505520	324	PREDICTED: LOW QUALITY PROTEIN: OTU doma	0.996	0.882	0.668	1e-107
363807892	324	uncharacterized protein LOC100780620 [Gl	0.996	0.882	0.653	1e-105
225436773	325	PREDICTED: OTU domain-containing protein	0.996	0.88	0.685	1e-104
89953403	327	Fgenesh protein 81 [Beta vulgaris]	0.996	0.874	0.661	1e-101

>gi|224131236|ref|XP_002321034.1| predicted protein [Populus trichocarpa] gi|222861807|gb|EEE99349.1| predicted protein [Populus trichocarpa]

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/322 (68%), Positives = 255/322 (79%), Gaps = 36/322 (11%)

Query: 1   MADTQEIEETPSEAHSGDASQKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQ 60
           M+D QEI++ P+EA   + SQK++E+RDEMLSRHRKEI QLQNKE E+KKAAAKGSKAEQ
Sbjct: 1   MSDAQEIQDQPTEAIPANVSQKEEESRDEMLSRHRKEIRQLQNKEIEMKKAAAKGSKAEQ 60

Query: 61  KAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQ 120
           KAKKK VEEE+S+LSAKL+EKHA+ELASLGY+S+NGNE SNLDNLVKAVAGV+V +Q + 
Sbjct: 61  KAKKKLVEEEVSQLSAKLKEKHAEELASLGYNSTNGNESSNLDNLVKAVAGVSVTNQPEH 120

Query: 121 AKPSKGTKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDG 180
           +KPSK  KRR KRAQQEA REQRIQEEQSN+ SDR +EDEKLE+KL PLGLT+N+IKPDG
Sbjct: 121 SKPSKSAKRRGKRAQQEAEREQRIQEEQSNLESDRMIEDEKLERKLEPLGLTINEIKPDG 180

Query: 181 HCLYRAVEDQLAHLSGG-----------------------------------EESAQSQV 205
           HCLYRAVEDQLA LSGG                                   E S  S  
Sbjct: 181 HCLYRAVEDQLALLSGGSAPYDYQELRKLVAAYMRENSPDFLPFFLSDTITEEHSDHSLS 240

Query: 206 ERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEY-SNGGSDSSGS 264
           +RFENYCKEVEST AWGG+LEL ALTHCLR+HI I+SGSFPDVEMGKEY S+GG+ SS +
Sbjct: 241 DRFENYCKEVESTTAWGGQLELGALTHCLRRHIKIFSGSFPDVEMGKEYKSDGGAGSSNA 300

Query: 265 SIILSYHRHAFGLGEHYNSVIP 286
           SI+LSYH+HAFGLGEHYNSV+P
Sbjct: 301 SIMLSYHKHAFGLGEHYNSVVP 322

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571935|ref|XP_002526909.1| OTU domain-containing protein 6B, putative [Ricinus communis] gi|223533728|gb|EEF35462.1| OTU domain-containing protein 6B, putative [Ricinus communis]

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/320 (69%), Positives = 252/320 (78%), Gaps = 36/320 (11%)

Query: 3   DTQEIEETPSEAHSGDASQKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKA 62
           DTQ IEETP EA   +ASQK+QE RDEMLSRHRKEI+QLQNKE ELKKAAAKGSKAEQK+
Sbjct: 2   DTQVIEETPFEAIQTNASQKQQEARDEMLSRHRKEIAQLQNKEIELKKAAAKGSKAEQKS 61

Query: 63  KKKQVEEEISRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAK 122
           KKKQVEE+IS+LSAKL+EKHA+ELASLGY+S  GNEKSNLDNLVKA+AGV+V +Q + AK
Sbjct: 62  KKKQVEEQISQLSAKLKEKHAEELASLGYNSITGNEKSNLDNLVKAIAGVSVTNQPELAK 121

Query: 123 PSKGTKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHC 182
            SKG KRR KRAQQEA REQRIQEEQSN+VSDR +E+EKL+ KL PLGLTVNDIKPDGHC
Sbjct: 122 VSKGAKRRGKRAQQEAEREQRIQEEQSNLVSDRLIENEKLKGKLEPLGLTVNDIKPDGHC 181

Query: 183 LYRAVEDQLAHLSGGE-----------------------------------ESAQSQVER 207
           LYRA+EDQL+ LSGG                                    +S  S  +R
Sbjct: 182 LYRAIEDQLSVLSGGSSPYTYQDLRKMVAAYMREHASDFLPFFLSDNTIEGDSDDSLADR 241

Query: 208 FENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSN-GGSDSSGSSI 266
           FENYCKEVEST+AWGG+LEL ALTHCL KHI I+SGSFPDVEMGKEY N  G+ SS +SI
Sbjct: 242 FENYCKEVESTSAWGGQLELGALTHCLTKHIKIFSGSFPDVEMGKEYKNDDGAGSSNTSI 301

Query: 267 ILSYHRHAFGLGEHYNSVIP 286
           +LSYH+HAFGLGEHYNSV+P
Sbjct: 302 LLSYHKHAFGLGEHYNSVVP 321

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436806|ref|XP_004136183.1| PREDICTED: OTU domain-containing protein 6B-like [Cucumis sativus]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/322 (66%), Positives = 246/322 (76%), Gaps = 38/322 (11%)

Query: 1   MADTQEIEETPSEAHSGDASQKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQ 60
           M DTQ+ E+T S      ASQ+  E+RDEMLS  RKEISQLQNKE ELKKAAA+GSKAEQ
Sbjct: 1   MEDTQQTEDTSSGTVPDKASQENHESRDEMLSLCRKEISQLQNKEIELKKAAARGSKAEQ 60

Query: 61  KAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQ 120
           K KKKQVEEEIS+LS KL++K A+ELASLG+S+SNGNEK N+DNLVKA+AGV++ +Q D 
Sbjct: 61  KVKKKQVEEEISQLSVKLKKKQAEELASLGFSNSNGNEK-NIDNLVKAIAGVSMAAQSDH 119

Query: 121 AKPSKGTKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDG 180
           +KPSK T+R+EKRAQQEA R++RI+EEQSNIVSDR +E+E LEKKL PLGLTVN+IKPDG
Sbjct: 120 SKPSKSTRRKEKRAQQEAERDRRIEEEQSNIVSDRMIENEHLEKKLEPLGLTVNEIKPDG 179

Query: 181 HCLYRAVEDQLAHLSGGE-----------------------------------ESAQSQV 205
           HCLYRAVE+QLA+LSGG                                     S  S  
Sbjct: 180 HCLYRAVENQLAYLSGGSSPYNYQQLREMVAAYMRDHSTDYMPFFLSDNGVEGNSNSSLA 239

Query: 206 ERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSS 265
           ERFENYCKEVESTAAWGG+LEL ALTHCLRKHIMI+SGSFPDVEMGKEY + G     SS
Sbjct: 240 ERFENYCKEVESTAAWGGQLELGALTHCLRKHIMIFSGSFPDVEMGKEYKSEG--VINSS 297

Query: 266 IILSYHRHAFGLGEHYNSVIPI 287
           I LSYH+HAFGLGEHYNSV+P+
Sbjct: 298 IRLSYHKHAFGLGEHYNSVVPV 319

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520871|ref|XP_004167456.1| PREDICTED: LOW QUALITY PROTEIN: OTU domain-containing protein 6B-like [Cucumis sativus]

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/304 (68%), Positives = 239/304 (78%), Gaps = 38/304 (12%)

Query: 19  ASQKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKL 78
           ASQ+  E+RDEMLSRHRKEISQLQNKE ELKKAAA+GSKAEQK K KQVEEEIS+LS KL
Sbjct: 25  ASQENHESRDEMLSRHRKEISQLQNKEIELKKAAARGSKAEQKVKXKQVEEEISQLSVKL 84

Query: 79  REKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEA 138
           ++K A+ELASLG+S+SNGNEK N+DNLVKA+AGV++ +Q D +KPSK T+R+EKRAQQEA
Sbjct: 85  KKKQAEELASLGFSNSNGNEK-NIDNLVKAIAGVSMAAQSDHSKPSKSTRRKEKRAQQEA 143

Query: 139 AREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGE 198
            R++RI+EEQSNIVSDR +E+E LEKKL PLGLTVN+IKPDGHCLYRAVE+QLA+LSGG 
Sbjct: 144 ERDRRIEEEQSNIVSDRMIENEHLEKKLEPLGLTVNEIKPDGHCLYRAVENQLAYLSGGS 203

Query: 199 -----------------------------------ESAQSQVERFENYCKEVESTAAWGG 223
                                               S  S  ERFENYCKEVESTAAWGG
Sbjct: 204 SPYNYQQLREMVAAYMRDHSTDYMPFFLSDNGVEGNSNSSLAERFENYCKEVESTAAWGG 263

Query: 224 ELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNS 283
           +LEL ALTHCLRKHIMI+SGSFPDVEMGKEY + G  +  SSI LSYH+HAFGLGEHYNS
Sbjct: 264 QLELGALTHCLRKHIMIFSGSFPDVEMGKEYKSEGVIN--SSIRLSYHKHAFGLGEHYNS 321

Query: 284 VIPI 287
           V+P+
Sbjct: 322 VVPV 325

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521917|gb|AFK49020.1| unknown [Medicago truncatula]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/302 (67%), Positives = 238/302 (78%), Gaps = 36/302 (11%)

Query: 22  KKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREK 81
           K++ETRDE+L+RHRKEISQLQ KE E+KK AA+GSKAEQKAKK+QVEEE+S+LSAKL+EK
Sbjct: 23  KEEETRDEILARHRKEISQLQKKEVEMKKQAARGSKAEQKAKKRQVEEEVSQLSAKLKEK 82

Query: 82  HAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAARE 141
            AKEL++LGYSS  GNEKSN+DNLVKA+AGV+V SQ +  K SK  +RR+KRAQQEA RE
Sbjct: 83  QAKELSALGYSSGIGNEKSNMDNLVKAIAGVSVSSQPENTKVSKAKQRRDKRAQQEAERE 142

Query: 142 QRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGE--- 198
           QRIQ EQ++I+SDRTVE+EKLE+KL PLGLTV +IKPDGHCLYRAVE+QLAHL GG+   
Sbjct: 143 QRIQAEQNDIISDRTVENEKLERKLKPLGLTVCEIKPDGHCLYRAVENQLAHLFGGKSPY 202

Query: 199 --------------------------------ESAQSQVERFENYCKEVESTAAWGGELE 226
                                           +S +S  ++FENYCKEVESTA WGG+LE
Sbjct: 203 TFQQLREMAAAYMMKHTSDFLPFCLSENLIEGDSDESIAQKFENYCKEVESTAIWGGQLE 262

Query: 227 LRALTHCLRKHIMIYSGSFPDVEMGKEY-SNGGSDSSGSSIILSYHRHAFGLGEHYNSVI 285
           L ALTHCL+KHIMI+SGSFPDVEMGKEY S  G  SSGSSI+LSYH HAFGLGEHYNSV+
Sbjct: 263 LGALTHCLKKHIMIFSGSFPDVEMGKEYKSADGIGSSGSSIMLSYHMHAFGLGEHYNSVV 322

Query: 286 PI 287
           PI
Sbjct: 323 PI 324

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511169|ref|XP_003625873.1| OTU domain-containing protein 6B [Medicago truncatula] gi|355500888|gb|AES82091.1| OTU domain-containing protein 6B [Medicago truncatula]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/302 (66%), Positives = 237/302 (78%), Gaps = 36/302 (11%)

Query: 22  KKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREK 81
           K++ETRDE+L+RHRKEISQLQ KE E+KK AA+GSKAEQKAKK+QVEEE+S+LSAKL+EK
Sbjct: 32  KEEETRDEILARHRKEISQLQKKEVEMKKQAARGSKAEQKAKKRQVEEEVSQLSAKLKEK 91

Query: 82  HAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAARE 141
            AKEL++LGYSS  GNEKSN+DNLVKA+AGV+V SQ +  K SK  +RR+KRAQQEA RE
Sbjct: 92  QAKELSALGYSSGIGNEKSNMDNLVKAIAGVSVSSQPENTKVSKAKQRRDKRAQQEAERE 151

Query: 142 QRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGE--- 198
           QRIQ EQ++ +SDRTVE+EKLE+KL PLGLTV +IKPDGHCLYRAVE+QLAHL GG+   
Sbjct: 152 QRIQAEQNDNISDRTVENEKLERKLKPLGLTVCEIKPDGHCLYRAVENQLAHLFGGKSPY 211

Query: 199 --------------------------------ESAQSQVERFENYCKEVESTAAWGGELE 226
                                           +S +S  ++FENYCKEVESTA WGG+LE
Sbjct: 212 TFQQLREMAAAYMRKHTSDFLPFCLSENLIEGDSDESIAQKFENYCKEVESTAIWGGQLE 271

Query: 227 LRALTHCLRKHIMIYSGSFPDVEMGKEY-SNGGSDSSGSSIILSYHRHAFGLGEHYNSVI 285
           L ALTHCL+KHIMI+SGSFPDVEMGKEY S  G  SSGSSI+LSYH HAFGLGEHYNSV+
Sbjct: 272 LGALTHCLKKHIMIFSGSFPDVEMGKEYKSADGIGSSGSSIMLSYHMHAFGLGEHYNSVV 331

Query: 286 PI 287
           PI
Sbjct: 332 PI 333

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505520|ref|XP_003521538.1| PREDICTED: LOW QUALITY PROTEIN: OTU domain-containing protein 6B-like [Glycine max]

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/323 (66%), Positives = 247/323 (76%), Gaps = 37/323 (11%)

Query: 1   MADTQEIEETPSEAHSGDASQKKQ-ETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAE 59
           M DTQEIEE   E    D + KKQ ET DE LSRHRKEI QLQ KE E+KKAAA+GSKAE
Sbjct: 1   MEDTQEIEEQGHEEVISDKTFKKQQETLDEXLSRHRKEILQLQKKEVEMKKAAARGSKAE 60

Query: 60  QKAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHD 119
           QKAKKKQVEEE+S+LSAKL+E  AKELA+LGY+SSNGNEKSNLD+LVKA+AGV+V SQ +
Sbjct: 61  QKAKKKQVEEEVSQLSAKLKENQAKELAALGYNSSNGNEKSNLDSLVKAIAGVSVASQPE 120

Query: 120 QAKPSKGTKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPD 179
             K SK  +RREKRAQQEA REQRIQ EQS+I+SDR +E+EKLEKKL PLGLTV +IKPD
Sbjct: 121 HTKVSKAKQRREKRAQQEAEREQRIQSEQSDIISDRMIENEKLEKKLKPLGLTVCEIKPD 180

Query: 180 GHCLYRAVEDQLAHLSGG-----------------------------------EESAQSQ 204
           GHCLYRAVEDQLA LSGG                                   ++S +S 
Sbjct: 181 GHCLYRAVEDQLALLSGGRSPYTYQDLREMVAAYMRNHTSDFLPFFLSENLIEDDSDESP 240

Query: 205 VERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEY-SNGGSDSSG 263
            ++FENYCKEVESTA WGG+LEL ALTHCL+KHIMI+SGSFPDVEMGKEY S+GG+  S 
Sbjct: 241 AQKFENYCKEVESTATWGGQLELGALTHCLKKHIMIFSGSFPDVEMGKEYKSDGGAGMSN 300

Query: 264 SSIILSYHRHAFGLGEHYNSVIP 286
            SI+LSYH+HAFGLGEHYNSV+P
Sbjct: 301 LSIMLSYHKHAFGLGEHYNSVVP 323

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807892|ref|NP_001242191.1| uncharacterized protein LOC100780620 [Glycine max] gi|255641250|gb|ACU20902.1| unknown [Glycine max]

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/323 (65%), Positives = 245/323 (75%), Gaps = 37/323 (11%)

Query: 1   MADTQEIEETP-SEAHSGDASQKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAE 59
           M DTQEIEE    E  S   S+K+QET DE+LSRHRKEI QLQ KE E+KKA A+GSKAE
Sbjct: 1   MEDTQEIEEQAHKEVISDKTSEKQQETLDEILSRHRKEILQLQKKEVEMKKATARGSKAE 60

Query: 60  QKAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHD 119
           QKAKKKQVEEE+ +LSAKL+E HAKEL +LGY S NGNEKSNLD+LVKA+AGV+V SQ +
Sbjct: 61  QKAKKKQVEEEVCQLSAKLKENHAKELTALGYISGNGNEKSNLDSLVKAIAGVSVTSQPE 120

Query: 120 QAKPSKGTKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPD 179
             K SK  +RR+KRAQQEA REQRIQ EQS+I+SDR +E+EKLEKKL PLGLTV +IKPD
Sbjct: 121 HTKVSKAKQRRDKRAQQEAEREQRIQAEQSDIISDRVIENEKLEKKLKPLGLTVCEIKPD 180

Query: 180 GHCLYRAVEDQLAHLSGG-----------------------------------EESAQSQ 204
           GHCLYRA+EDQLA LSGG                                   ++S +S 
Sbjct: 181 GHCLYRAIEDQLAILSGGRSPYTYQELREMVAAYMRNHTSDFLPFFLSENLIEDDSNESF 240

Query: 205 VERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEY-SNGGSDSSG 263
            ++F NYCKEVESTA WGG+LEL ALTHCL+KHIMI+SGSFPDVEMGKEY S+GG+  S 
Sbjct: 241 AQKFGNYCKEVESTATWGGQLELGALTHCLKKHIMIFSGSFPDVEMGKEYKSDGGTGLSN 300

Query: 264 SSIILSYHRHAFGLGEHYNSVIP 286
           SSI+LSYH+HAFGLGEHYNSV+P
Sbjct: 301 SSIMLSYHKHAFGLGEHYNSVVP 323

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436773|ref|XP_002267732.1| PREDICTED: OTU domain-containing protein 6B isoform 2 [Vitis vinifera]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 220/321 (68%), Positives = 247/321 (76%), Gaps = 35/321 (10%)

Query: 1   MADTQEIEETPSEAHSGDASQKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQ 60
           M DTQE +  P E    D  +KK+ET DEMLSRHRKEISQLQNKE  +KKAAAKGSKAEQ
Sbjct: 1   MEDTQEKDGKPPEEFPEDTHEKKRETLDEMLSRHRKEISQLQNKEAAMKKAAAKGSKAEQ 60

Query: 61  KAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQ 120
           KAKKKQVE+EIS+LS+ L+EK A ELAS+GYSS +G EKSNLDNLVKA+AGV+V SQ + 
Sbjct: 61  KAKKKQVEDEISQLSSDLKEKQAAELASIGYSSGSGKEKSNLDNLVKAIAGVSVTSQAEH 120

Query: 121 AKPSKGTKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDG 180
           ++PSK  KRREKRAQQEAAREQRIQEEQSNIVSDR +E+E LEKKL PLGL VNDIKPDG
Sbjct: 121 SRPSKSAKRREKRAQQEAAREQRIQEEQSNIVSDRMIENEILEKKLEPLGLAVNDIKPDG 180

Query: 181 HCLYRAVEDQLAHLSGGE---------------------------------ESAQSQVER 207
           HCLYRAVEDQLA LSGG                                  +S  S  ER
Sbjct: 181 HCLYRAVEDQLALLSGGSSPYTYQELREMVAAYMRKHASDFLPFFLSETEGDSDISLAER 240

Query: 208 FENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSN--GGSDSSGSS 265
           FENYCKE+ESTAAWGG+LEL ALTHCL+KHIMI+SGSFPDVEMGKEY +  G +D+S  S
Sbjct: 241 FENYCKEIESTAAWGGQLELGALTHCLKKHIMIFSGSFPDVEMGKEYKSDVGRTDTSNQS 300

Query: 266 IILSYHRHAFGLGEHYNSVIP 286
           I+LSYH+HAFGLGEHYNSVIP
Sbjct: 301 IMLSYHKHAFGLGEHYNSVIP 321

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|89953403|gb|ABD83295.1| Fgenesh protein 81 [Beta vulgaris]

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 215/325 (66%), Positives = 245/325 (75%), Gaps = 39/325 (12%)

Query: 1   MADTQEIEETPSEAHSGDASQKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQ 60
           M  + EIE   ++ +  DAS KKQETRDEMLSRHRKEI QLQNKE E+KKAAAKGSKAEQ
Sbjct: 1   MEHSSEIEVLVAQENFSDASVKKQETRDEMLSRHRKEIGQLQNKEIEMKKAAAKGSKAEQ 60

Query: 61  KAKKKQVEEEISRLSAKLREKHAKELASLGYSSS---NGNEKSNLDNLVKAVAGVTVIS- 116
           KAKKKQVEEEI++LSAKL+EKHA+EL+SLGY SS   +GN++ NLD LVKA+AGV+V S 
Sbjct: 61  KAKKKQVEEEIAKLSAKLKEKHAQELSSLGYISSSKVDGNDRGNLDTLVKAIAGVSVASA 120

Query: 117 QHDQAKPSKGTKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDI 176
            ++  KPSK  KRREKRAQ+EAAREQRI+EEQS+IVSDRTVE+E LEKKLGPLGLT+ ++
Sbjct: 121 ANNNHKPSKSVKRREKRAQEEAAREQRIKEEQSSIVSDRTVENELLEKKLGPLGLTIYEV 180

Query: 177 KPDGHCLYRAVEDQLAHLSGGE-----------------------------------ESA 201
           KPDGHCLYRAVEDQL HLS G                                    ES 
Sbjct: 181 KPDGHCLYRAVEDQLVHLSRGSSPYNFQQLREMVASYMRDHAFDFLPFFTSENAVEGESD 240

Query: 202 QSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDS 261
            S  +RFE+YCKEVESTAAWGG+LEL ALTHCL+KHIMI+SGSFPDVEMGKEY      S
Sbjct: 241 DSLSQRFESYCKEVESTAAWGGQLELGALTHCLKKHIMIFSGSFPDVEMGKEYKIDDDAS 300

Query: 262 SGSSIILSYHRHAFGLGEHYNSVIP 286
             S I LSYHRHAFGLGEHYNSV+P
Sbjct: 301 LSSCIKLSYHRHAFGLGEHYNSVVP 325

Source: Beta vulgaris

Species: Beta vulgaris

Genus: Beta

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	287
TAIR|locus:2099172	332	AT3G62940 [Arabidopsis thalian	0.745	0.644	0.402	6.1e-66
ZFIN|ZDB-GENE-040426-974	293	otud6b "OTU domain containing	0.324	0.317	0.41	1.7e-24
MGI|MGI:1919451	294	Otud6b "OTU domain containing	0.313	0.306	0.422	7.4e-23
DICTYBASE|DDB_G0279375	340	DDB_G0279375 "OTU domain conta	0.285	0.241	0.406	2.1e-20
MGI|MGI:3644685	290	Otud6a "OTU domain containing	0.261	0.258	0.402	5.7e-17
UNIPROTKB|G4NEZ8	304	MGG_11505 "Uncharacterized pro	0.264	0.25	0.341	3.8e-14
SGD|S000001005	307	OTU2 "Protein of unknown funct	0.257	0.241	0.345	8.4e-13
CGD|CAL0002605	323	orf19.1959 [Candida albicans (	0.257	0.229	0.296	9.3e-11
ASPGD|ASPL0000026973	340	AN5638 [Emericella nidulans (t	0.383	0.323	0.333	1.1e-10
POMBASE|SPAC1952.03	324	otu2 "ubiquitin specific cyste	0.282	0.25	0.284	1.7e-09

TAIR|locus:2099172 AT3G62940 [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 6.1e-66, Sum P(2) = 6.1e-66
 Identities = 91/226 (40%), Positives = 122/226 (53%)

Query:     1 MADTQEIEETPSEAHSGDASQKKQ-ETRDEMLSRHRKEISQLQNKETXXXXXXXXXXXXX 59
             MAD +  E   SE    DASQ++Q ET +EML+RHR+EI QLQNKET             
Sbjct:     1 MADNKTSEGIVSEETPMDASQEQQHETVEEMLARHRQEIKQLQNKETEMKKAAAKGSKAE 60

Query:    60 XXXXXXXXXXXISRLSAKLREKHAKELASLGYSSSNGN---------EKSNLDNLVKAVA 110
                        IS+LS KL++K  KELAS G+SSS+ N         +K ++D LV+A+A
Sbjct:    61 QKAKKKQVEDDISKLSTKLKDKQLKELASQGFSSSSSNNIAKDETTEKKGDIDTLVRAIA 120

Query:   111 GVTVISQHDQAKPSKGTKXXXXXXXXXXXXXXXXXXXXSNIVSDRTVEDXXXXXXXXXXX 170
             GV+V +Q + +KPSK  K                    S++ SDR VE+           
Sbjct:   121 GVSVTAQQEHSKPSKSVKRREKRAKEEADREQRIKEEQSHVKSDRMVENAKLEKKLKPLG 180

Query:   171 XTVNDIKPDGHCLYRAVEDQLAHLSGGEE--SAQSQVERFENYCKE 214
              TV++IKPDGHCLYRAVE+QLA+ SGG    + Q+  E   +Y +E
Sbjct:   181 LTVSEIKPDGHCLYRAVENQLANRSGGASPYTYQNLREMAASYMRE 226

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0006606 "protein import into nucleus" evidence=RCA

ZFIN|ZDB-GENE-040426-974 otud6b "OTU domain containing 6B" [Danio rerio (taxid:7955)]

 Score = 189 (71.6 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
 Identities = 41/100 (41%), Positives = 55/100 (55%)

Query:   188 EDQLAHLSGGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPD 247
             +D +  L+          E FE YC +V  TAAWGG+LEL+AL+  L+  I +     P 
Sbjct:   192 DDFMPFLTNPNTGDMYTAEEFEKYCSDVADTAAWGGQLELKALSQVLQLPIEVIQADSPC 251

Query:   248 VEMGKEYXXXXXXXXXXXIILSYHRHAFGLGEHYNSVIPI 287
             + +G+EY           I L Y RHA+GLGEHYNSV P+
Sbjct:   252 ITIGEEYDKPK-------ITLIYMRHAYGLGEHYNSVEPL 284

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:1919451 Otud6b "OTU domain containing 6B" [Mus musculus (taxid:10090)]

 Score = 188 (71.2 bits), Expect = 7.4e-23, Sum P(2) = 7.4e-23
 Identities = 41/97 (42%), Positives = 55/97 (56%)

Query:   188 EDQLAHLSGGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPD 247
             +D L  L+          E F  YC ++ +TAAWGG+LELRAL+H L+  I I     P 
Sbjct:   193 DDFLPFLTNPSTGDMYTPEEFGKYCDDIVNTAAWGGQLELRALSHILQTPIEILQADAPP 252

Query:   248 VEMGKEYXXXXXXXXXXXIILSYHRHAFGLGEHYNSV 284
             + +G+EY           ++L Y RHA+GLGEHYNSV
Sbjct:   253 IIVGEEYPRNP-------LVLVYMRHAYGLGEHYNSV 282

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0279375 DDB_G0279375 "OTU domain containin protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 170 (64.9 bits), Expect = 2.1e-20, Sum P(2) = 2.1e-20
 Identities = 37/91 (40%), Positives = 54/91 (59%)

Query:   198 EESAQSQVERFENYCKE-VESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYXX 256
             E+   +  +  + YC+E V +   WGG +EL+AL+  L+K I I++    D+ +G+E+  
Sbjct:   256 EDEYSTAEDPIQEYCQEQVLTIGKWGGHIELKALSQSLKKVITIFNAYSNDIIIGEEFTN 315

Query:   257 XXXXXXXXXIILSYHRHAFGLGEHYNSVIPI 287
                      I L+YHRHAF LGEHYNS IPI
Sbjct:   316 P--------IYLTYHRHAFTLGEHYNSAIPI 338

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:3644685 Otud6a "OTU domain containing 6A" [Mus musculus (taxid:10090)]

 Score = 153 (58.9 bits), Expect = 5.7e-17, Sum P(2) = 5.7e-17
 Identities = 33/82 (40%), Positives = 46/82 (56%)

Query:   206 ERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYXXXXXXXXXXX 265
             E F  YC ++   A+WGG+LELRAL+H L+  I +   + P + +G+EY           
Sbjct:   202 EDFLRYCDDIVHNASWGGQLELRALSHVLQTPIEVVQANSPTIVIGEEYTRKP------- 254

Query:   266 IILSYHRHAFGLGEHYNSVIPI 287
             + L Y  +A   GEHYNSV PI
Sbjct:   255 VTLVYLHYACDFGEHYNSVKPI 276

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|G4NEZ8 MGG_11505 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 124 (48.7 bits), Expect = 3.8e-14, Sum P(3) = 3.8e-14
 Identities = 27/79 (34%), Positives = 40/79 (50%)

Query:   206 ERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYXXXXXXXXXXX 265
             E  ++Y +++  TA WGG +EL AL       + + +     V   KE            
Sbjct:   225 EPLDDYVRKMRDTAEWGGHMELLALASTYNVEVRVIADGRTAVVQPKE---PKEDEPARQ 281

Query:   266 IILSYHRHAFGLGEHYNSV 284
             + L+Y+RH FGLGEHYNS+
Sbjct:   282 VWLAYYRHGFGLGEHYNSL 300

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0043581 "mycelium development" evidence=IEP

SGD|S000001005 OTU2 "Protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 122 (48.0 bits), Expect = 8.4e-13, Sum P(3) = 8.4e-13
 Identities = 28/81 (34%), Positives = 45/81 (55%)

Query:   204 QVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYXXXXXXXXX 263
             +++  + Y KE+E TA WGGE+E+ AL+H     I I     P +++  E          
Sbjct:   231 KMKDIDEYTKEMEHTAQWGGEIEILALSHVFDCPISILMSGRP-IQVYNECGKNPE---- 285

Query:   264 XXIILSYHRHAFGLGEHYNSV 284
               + L Y++H++ LGEHYNS+
Sbjct:   286 --LKLVYYKHSYALGEHYNSL 304

GO:0008150 "biological_process" evidence=ND

GO:0005840 "ribosome" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

CGD|CAL0002605 orf19.1959 [Candida albicans (taxid:5476)]

 Score = 112 (44.5 bits), Expect = 9.3e-11, Sum P(3) = 9.3e-11
 Identities = 24/81 (29%), Positives = 42/81 (51%)

Query:   204 QVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYXXXXXXXXX 263
             ++   ++Y  E+ +TA WG ++E+ AL+      I IY      + + +           
Sbjct:   247 ELRDLDDYINELTTTAMWGSDMEILALSKVFNCPISIYMAGASTLTINEH-------GQL 299

Query:   264 XXIILSYHRHAFGLGEHYNSV 284
               + L Y++H+FGLGEHYNS+
Sbjct:   300 PELKLGYYKHSFGLGEHYNSL 320

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0016579 "protein deubiquitination" evidence=IEA

ASPGD|ASPL0000026973 AN5638 [Emericella nidulans (taxid:162425)]

 Score = 142 (55.0 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
 Identities = 38/114 (33%), Positives = 57/114 (50%)

Query:   172 TVNDIKPDGHCLYRAVE-DQLAHLSGGEESAQSQVERFENYCKEVESTAAWGGELELRAL 230
             TV   K DG+   RAV  D +A     +E      E  E+Y ++++ TA WGG+LEL+A+
Sbjct:   226 TVASPKHDGYRAVRAVTADFIAEHK--DEFEPFMEEPLESYTRKIKLTAEWGGQLELQAI 283

Query:   231 THCLRKHIMIYSGSFPDVEMGKEYXXXXXXXXXXXIILSYHRHAFGLGEHYNSV 284
                    I +  G    +E  +             I L+Y+RH +GLGEHYN++
Sbjct:   284 ARAYGVDINVVQGD-GRIEKIEAGDVEEEERAKRVIWLAYYRHTYGLGEHYNAL 336

GO:0005840 "ribosome" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0016579 "protein deubiquitination" evidence=IEA

POMBASE|SPAC1952.03 otu2 "ubiquitin specific cysteine protease, OTU family, Otu2" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 124 (48.7 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
 Identities = 25/88 (28%), Positives = 47/88 (53%)

Query:   198 EESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYXXX 257
             EES +  V    +YC E+ + + WG ++E++AL + L   + +Y+   P ++        
Sbjct:   240 EESGE--VLPVSDYCNEIRNNSKWGSDIEIQALANSLEVPVHVYNTEGPVLKFNPS---- 293

Query:   258 XXXXXXXXIILSYHRHAFGLGEHYNSVI 285
                     + ++Y++H FGLG HYNS++
Sbjct:   294 -TVKFEKPLCIAYYQHLFGLGAHYNSLL 320

GO:0004843 "ubiquitin-specific protease activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006508 "proteolysis" evidence=IEA

GO:0016579 "protein deubiquitination" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8N6M0	OTU6B_HUMAN	No assigned EC number	0.3558	0.8188	0.8020	yes	no
Q8K2H2	OTU6B_MOUSE	No assigned EC number	0.3286	0.8397	0.8197	yes	no
Q7ZV00	OTU6B_DANRE	No assigned EC number	0.3612	0.8501	0.8327	yes	no
Q5ZIP6	OTU6B_CHICK	No assigned EC number	0.3541	0.8432	0.8013	yes	no
Q5M8L0	OTU6B_XENTR	No assigned EC number	0.3356	0.8292	0.8095	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_XIV0731	hypothetical protein (327 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_Genewise1_v1.C_LG_VII2715	hypothetical protein (380 aa)				•					0.448

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	287
pfam02338	123	pfam02338, OTU, OTU-like cysteine protease	2e-19
COG5539	306	COG5539, COG5539, Predicted cysteine protease (OTU	1e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002

>gnl|CDD|216981 pfam02338, OTU, OTU-like cysteine protease

 Score = 81.4 bits (201), Expect = 2e-19
 Identities = 36/125 (28%), Positives = 50/125 (40%), Gaps = 22/125 (17%)

Query: 177 KPDGHCLYRAVEDQLAHLSGGEESA-----------QSQVERFENYC--------KEVES 217
             DG+CL+ AV DQL   +G +E             +   E FE +         K +  
Sbjct: 1   PGDGNCLFHAVSDQLG-DAGRQELHDELREAVVEYLRENREDFEKFLEEDENEYYKWISK 59

Query: 218 TAAWGGELELRALTHCLRKHIMIYSGSFPDVEMG-KEYSNGGSDSSGSSIILSYHRHAFG 276
             AWGG +E+ AL H LR  I++Y      + +  K Y      +    I LSY      
Sbjct: 60  DGAWGGNIEIFALAHILRVPIIVYKLQGGRITVYIKIYGTYLPLNKKPVIRLSYLGLE-Y 118

Query: 277 LGEHY 281
            G HY
Sbjct: 119 TGNHY 123

This family is comprised of a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila. Members include proteins from eukaryotes, viruses and pathogenic bacterium. The conserved cysteine and histidine, and possibly the aspartate, represent the catalytic residues in this putative group of proteases. Length = 123

>gnl|CDD|227826 COG5539, COG5539, Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

 Score = 58.0 bits (140), Expect = 1e-09
 Identities = 50/310 (16%), Positives = 101/310 (32%), Gaps = 61/310 (19%)

Query: 21  QKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLRE 80
              +   + +  + R E+  LQ K T + K    G         +++  +   LS  L +
Sbjct: 8   AAAETAMESLTEKQRFELKDLQTKITRIMKQLTFGR------PPQRLNGKCLDLSYALSQ 61

Query: 81  KHAKEL--ASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHD----------QAKPSKGTK 128
           K   E+  A    + +N  ++ +    ++ +  + + S             +  P +   
Sbjct: 62  KDEVEIEKAPKLRAETNEADQEDSLTPLQNIPELGISSFEKSVSQQSINVLEDMPGQDDN 121

Query: 129 RREKRAQQEAAREQRI---QEEQSNIVSDRTVE--DEKLEK--KLGPLGLTVNDIKPDGH 181
            R  +A++ + R+  +   +E  S  V           LE         +   D + DG 
Sbjct: 122 SRLFQAERYSLRDASVAKLREVVSLEVLSNPDLYNPAILEIDVIAYATWIVKPDSQGDGC 181

Query: 182 CLYRAVEDQLAHLSGGEESAQSQVERFEN----------------------------YCK 213
                + DQL       +  +   +R+ +                            Y  
Sbjct: 182 IEIAIISDQLPVRIHVVDVDKDSEDRYNSHPYVQRISILFTGIHFDEETLAMVLWDTYVN 241

Query: 214 EVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRH 273
           EV   A+ G  +E++ L   L+      + + P +    + +  G+   G      Y+ H
Sbjct: 242 EVLFDASDGITIEIQQLASLLKNPHYYTNTASPSI----KCNICGTGFVGE---KDYYAH 294

Query: 274 AFGLGEHYNS 283
           A   G HYN 
Sbjct: 295 ALATG-HYNF 303

Length = 306

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 33/213 (15%), Positives = 77/213 (36%), Gaps = 16/213 (7%)

Query: 13  EAHSGDASQKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKK--QVEEE 70
           E    +  ++ +E          KEI +L+++  EL++   +  +   + K++  ++E E
Sbjct: 252 EEELEELQEELEEAE--------KEIEELKSELEELREELEELQEELLELKEEIEELEGE 303

Query: 71  ISRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKP---SKGT 127
           IS L  +L E   +             +   L   ++     T++ + +Q          
Sbjct: 304 ISLLRERLEELENELEELEERLEELKEKIEALKEELEERE--TLLEELEQLLAELEEAKE 361

Query: 128 KRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAV 187
           +  EK +      E+  +  +  + ++   E  ++  +L  L   +  ++     L   +
Sbjct: 362 ELEEKLSALLEELEELFEALREEL-AELEAELAEIRNELEELKREIESLEERLERLSERL 420

Query: 188 EDQLAHLSGGEESAQSQVERFENYCKEVESTAA 220
           ED    L   E   +      E   +E+E    
Sbjct: 421 EDLKEELKELEAELEELQTELEELNEELEELEE 453

Length = 1163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	287
KOG2606	302	consensus OTU (ovarian tumor)-like cysteine protea	100.0
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	99.97
PF02338	121	OTU: OTU-like cysteine protease; InterPro: IPR0033	99.84
KOG3288	307	consensus OTU-like cysteine protease [Signal trans	99.54
PF10275	244	Peptidase_C65: Peptidase C65 Otubain; InterPro: IP	99.29
KOG2605	371	consensus OTU (ovarian tumor)-like cysteine protea	99.11
KOG3991	256	consensus Uncharacterized conserved protein [Funct	99.06
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	97.71
PF05415	104	Peptidase_C36: Beet necrotic yellow vein furovirus	91.43
PF14282	106	FlxA: FlxA-like protein	83.96

>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3e-65  Score=468.65  Aligned_cols=256  Identities=43%  Similarity=0.729  Sum_probs=214.9

Q ss_pred             cccccHHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-CC-CC
Q 023075           22 KKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLGYSSSN-GN-EK   99 (287)
Q Consensus        22 ~~~~~~e~l~~RHrkE~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el~~rh~~EL~~l~~~~~~-~~-~~   99 (287)
                      ...+++++|++|||+|+|+||++||+|||+++||+|    ++||+++.+|++||.+|.+||.+||..+...... .. .+
T Consensus         9 ~~~~~~e~iLaRHr~E~keLq~ki~~mKk~a~k~~k----~~rK~~~~~~~~le~el~qkH~kEL~~~~~~~~~e~~~~e   84 (302)
T KOG2606|consen    9 QDEESNEEILARHRRERKELQAKITSMKKAAPKGNK----KKRKELTEDIAKLEKELSQKHKKELEKLKLINESEVTPKE   84 (302)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccH----HHHHHHHHHHHHHHhHHHHHHHHHHHhhcccCccccCccc
Confidence            344556999999999999999999999999999996    8999999999999999999999999999753211 11 12


Q ss_pred             CcchhhhhhhcccccccccCCCCCchhhhhHHHHHHHHHHHH-HHHHHHH--hcccCCchhHHHHHHHHhccCCceEEee
Q 023075          100 SNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAARE-QRIQEEQ--SNIVSDRTVEDEKLEKKLGPLGLTVNDI  176 (287)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~sKa~~Rr~kr~a~~~~r~-~~i~~e~--~~~~~~r~~E~~~l~~~L~~~gL~i~~I  176 (287)
                      ...++++..++.+.....++.|+.||++|||.+++..++.++ ++|.+++  .+.++.+.+|.+.|.+.|...||.+++|
T Consensus        85 ~~~~s~l~~~a~~~~~~~ee~P~~sKa~k~r~k~r~e~r~~e~~~~~e~~~~~~~~~~k~~E~~k~~~il~~~~l~~~~I  164 (302)
T KOG2606|consen   85 NLIESVLSPIANMSLENKEETPRQSKARKRREKKRKEERKREAEKIAEEESLSNQADAKSMEKEKLAQILEERGLKMFDI  164 (302)
T ss_pred             cchhhhhcccccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHhccCccccC
Confidence            224455555566666655555667888888877766666665 7787643  4889999999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHhcCCCC-C------------------Ccchhh----------hHhHHHHHHHhhcCCccCcHHHH
Q 023075          177 KPDGHCLYRAVEDQLAHLSGG-E------------------ESAQSQ----------VERFENYCKEVESTAAWGGELEL  227 (287)
Q Consensus       177 ~~DGnCLFrAIa~QL~~~~~~-~------------------~fd~~~----------~~~f~eY~~~m~~~~~WGG~lEL  227 (287)
                      |+||||||+||+|||..++.. .                  +|-+|+          .++|+.||+.|++|+.|||+|||
T Consensus       165 p~DG~ClY~aI~hQL~~~~~~~~~v~kLR~~~a~Ymr~H~~df~pf~~~eet~d~~~~~~f~~Yc~eI~~t~~WGgelEL  244 (302)
T KOG2606|consen  165 PADGHCLYAAISHQLKLRSGKLLSVQKLREETADYMREHVEDFLPFLLDEETGDSLGPEDFDKYCREIRNTAAWGGELEL  244 (302)
T ss_pred             CCCchhhHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHhhhHhcCccccccCCHHHHHHHHHHhhhhccccchHHH
Confidence            999999999999999987654 1                  144442          35799999999999999999999


Q ss_pred             HHHHHhhcccEEEEeCCCCceEecCCcCCCCCCCCCCeEEEEeccCCCCCCCcccccccC
Q 023075          228 RALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI  287 (287)
Q Consensus       228 ~ALS~~l~~~I~V~~~~~~~~~ig~e~~~~~~~~~~~~i~L~Y~~h~y~LGeHYnSl~p~  287 (287)
                      .|||++|.+||.||+.++|++.||++|..      .+||.|+||+|+||||+|||||.|.
T Consensus       245 ~AlShvL~~PI~Vy~~~~p~~~~geey~k------d~pL~lvY~rH~y~LGeHYNS~~~~  298 (302)
T KOG2606|consen  245 KALSHVLQVPIEVYQADGPILEYGEEYGK------DKPLILVYHRHAYGLGEHYNSVTPL  298 (302)
T ss_pred             HHHHHhhccCeEEeecCCCceeechhhCC------CCCeeeehHHhHHHHHhhhcccccc
Confidence            99999999999999999999999999963      5899999999999999999999883

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=8.6e-31  Score=240.56  Aligned_cols=251  Identities=19%  Similarity=0.158  Sum_probs=194.3

Q ss_pred             cccccc-HHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 023075           21 QKKQET-RDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNGNEK   99 (287)
Q Consensus        21 ~~~~~~-~e~l~~RHrkE~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el~~rh~~EL~~l~~~~~~~~~~   99 (287)
                      +..-+| |+.|+.+||.|.++||.+||.|+|+++.|.+    +.|  |+..|..|+..|.++|+-|+..+.....+.++.
T Consensus         7 ~~~~~t~~e~lt~kq~~e~~dlq~kI~~~~kql~~g~~----~qr--l~~k~~~ls~~ls~~~e~~i~k~~~~~~et~ea   80 (306)
T COG5539           7 QAAAETAMESLTEKQRFELKDLQTKITRIMKQLTFGRP----PQR--LNGKCLDLSYALSQKDEVEIEKAPKLRAETNEA   80 (306)
T ss_pred             ccccchHHHHHHhhhhcccHHHHHHHHHHHHHHHccCc----hhh--hccccchHHHHhhhhHHHHhhhhhhhcchhhcc
Confidence            334455 8999999999999999999999999998875    322  999999999999999999999886433222221


Q ss_pred             Ccchhhhh--hhc------------cccccccc-CCCCCchhhhhHHHHHHHHHHHHHHHHHHHhcc----cCCchhHHH
Q 023075          100 SNLDNLVK--AVA------------GVTVISQH-DQAKPSKGTKRREKRAQQEAAREQRIQEEQSNI----VSDRTVEDE  160 (287)
Q Consensus       100 ~~~~~~~~--~~~------------~~~~~~~~-~~~~~sKa~~Rr~kr~a~~~~r~~~i~~e~~~~----~~~r~~E~~  160 (287)
                      .+.+++++  ..+            +....... .+....+.++||+.|...+.+....+++.++++    ++-...++.
T Consensus        81 ~q~~~l~~~q~~~~~~iss~e~s~~qq~~nv~ed~p~~~d~srl~q~~~~~l~~asv~~lrE~vs~Ev~snPDl~n~~i~  160 (306)
T COG5539          81 DQEDSLTPLQNIPELGISSFEKSVSQQSINVLEDMPGQDDNSRLFQAERYSLRDASVAKLREVVSLEVLSNPDLYNPAIL  160 (306)
T ss_pred             CCCccCCCcccCCccccccCcccccccccchhccCCCCCchHHHHHHHHhhhhhhhHHHHHHHHHHHHhhCccccchhhc
Confidence            12222111  111            11111111 233456999999999999998887777654444    555778888


Q ss_pred             HHHHHhccCCceEEeeCCCCchHHHHHHHHHhcCCCCC-------------C-------------cchhh--hHhHHHHH
Q 023075          161 KLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGE-------------E-------------SAQSQ--VERFENYC  212 (287)
Q Consensus       161 ~l~~~L~~~gL~i~~I~~DGnCLFrAIa~QL~~~~~~~-------------~-------------fd~~~--~~~f~eY~  212 (287)
                      .+...+..-+|.-.+++|||+|+|.+|++||..+....             .             ||+.+  ...|++||
T Consensus       161 ~~~~i~y~~~i~k~d~~~dG~ieia~iS~~l~v~i~~Vdv~~~~~dr~~~~~~~q~~~i~f~g~hfD~~t~~m~~~dt~~  240 (306)
T COG5539         161 EIDVIAYATWIVKPDSQGDGCIEIAIISDQLPVRIHVVDVDKDSEDRYNSHPYVQRISILFTGIHFDEETLAMVLWDTYV  240 (306)
T ss_pred             CcchHHHHHhhhccccCCCceEEEeEeccccceeeeeeecchhHHhhccCChhhhhhhhhhcccccchhhhhcchHHHHH
Confidence            88999999999999999999999999999998754311             0             55544  46899999


Q ss_pred             HHhhcCCccCcHHHHHHHHHhhcccEEEEeCCCCceEecCCcCCCCCCCCCCeEEEEeccCCCCCCCcccccc
Q 023075          213 KEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVI  285 (287)
Q Consensus       213 ~~m~~~~~WGG~lEL~ALS~~l~~~I~V~~~~~~~~~ig~e~~~~~~~~~~~~i~L~Y~~h~y~LGeHYnSl~  285 (287)
                      +.|..++.||+.+|++|||+.|++|+.++...+|.+.+++-       +.+..+-+.|++|+|++| ||||+.
T Consensus       241 ne~~~~a~~g~~~ei~qLas~lk~~~~~~nT~~~~ik~n~c-------~~~~~~e~~~~~Ha~a~G-H~n~~~  305 (306)
T COG5539         241 NEVLFDASDGITIEIQQLASLLKNPHYYTNTASPSIKCNIC-------GTGFVGEKDYYAHALATG-HYNFGE  305 (306)
T ss_pred             hhhcccccccchHHHHHHHHHhcCceEEeecCCceEEeecc-------ccccchhhHHHHHHHhhc-CccccC
Confidence            99999999999999999999999999999999999887642       235568899999999999 999974

>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae

Probab=99.84  E-value=1.5e-21  Score=158.45  Aligned_cols=102  Identities=35%  Similarity=0.652  Sum_probs=74.0

Q ss_pred             CCCCchHHHHHHHHHh----cCCCCCC--------cch-hhhHhHHHHHH--HhhcCCccCcHHHHHHHHHhhcccEEEE
Q 023075          177 KPDGHCLYRAVEDQLA----HLSGGEE--------SAQ-SQVERFENYCK--EVESTAAWGGELELRALTHCLRKHIMIY  241 (287)
Q Consensus       177 ~~DGnCLFrAIa~QL~----~~~~~~~--------fd~-~~~~~f~eY~~--~m~~~~~WGG~lEL~ALS~~l~~~I~V~  241 (287)
                      |||||||||||++||+    +....+.        +-. .-...|..|+.  +|+++++|||++||.|||++|+++|.||
T Consensus         1 pgDGnClF~Avs~~l~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Wg~~~el~a~a~~~~~~I~v~   80 (121)
T PF02338_consen    1 PGDGNCLFRAVSDQLYGDGGGSEDNHQELRKAVVDYLRDKNRDKFEEFLEGDKMSKPGTWGGEIELQALANVLNRPIIVY   80 (121)
T ss_dssp             -SSTTHHHHHHHHHHCTT-SSSTTTHHHHHHHHHHHHHTHTTTHHHHHHHHHHHTSTTSHEEHHHHHHHHHHHTSEEEEE
T ss_pred             CCCccHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhccccccCcHHHHHHHHHHhCCeEEEE
Confidence            7999999999999999    4333221        111 11234555554  5899999999999999999999999999


Q ss_pred             eCCCCceE----ecCCcCCCCCCCCCCeEEEEeccCCCCCCCcc
Q 023075          242 SGSFPDVE----MGKEYSNGGSDSSGSSIILSYHRHAFGLGEHY  281 (287)
Q Consensus       242 ~~~~~~~~----ig~e~~~~~~~~~~~~i~L~Y~~h~y~LGeHY  281 (287)
                      +...+...    +...+.   .....++|+|+|+.|.|..|.||
T Consensus        81 ~~~~~~~~~~~~~~~~~~---~~~~~~~i~l~~~~~l~~~~~Hy  121 (121)
T PF02338_consen   81 SSSDGDNVVFIKFTGKYP---PLESPPPICLCYHGHLYYTGNHY  121 (121)
T ss_dssp             CETTTBEEEEEEESCEES---TTTTTTSEEEEEETEEEEETTEE
T ss_pred             EcCCCCccceeeecCccc---cCCCCCeEEEEEcCCccCCCCCC
Confidence            87654422    222111   23457899999999999999999

In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....

>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=4.2e-15  Score=135.23  Aligned_cols=103  Identities=19%  Similarity=0.394  Sum_probs=82.7

Q ss_pred             ceEEeeCCCCchHHHHHHHHHhcCCCCCC-----------------cch-hhhHhHHHHHHHhhcCCccCcHHHHHHHHH
Q 023075          171 LTVNDIKPDGHCLYRAVEDQLAHLSGGEE-----------------SAQ-SQVERFENYCKEVESTAAWGGELELRALTH  232 (287)
Q Consensus       171 L~i~~I~~DGnCLFrAIa~QL~~~~~~~~-----------------fd~-~~~~~f~eY~~~m~~~~~WGG~lEL~ALS~  232 (287)
                      |..+.||.|++|||+||+.-++..-....                 |.+ +++..-.+||.+|.+...|||.|||..||+
T Consensus       110 l~~~vvp~DNSCLF~ai~yv~~k~~~~~~~elR~iiA~~Vasnp~~yn~AiLgK~n~eYc~WI~k~dsWGGaIElsILS~  189 (307)
T KOG3288|consen  110 LSRRVVPDDNSCLFTAIAYVIFKQVSNRPYELREIIAQEVASNPDKYNDAILGKPNKEYCAWILKMDSWGGAIELSILSD  189 (307)
T ss_pred             eEEEeccCCcchhhhhhhhhhcCccCCCcHHHHHHHHHHHhcChhhhhHHHhCCCcHHHHHHHccccccCceEEeeeehh
Confidence            67789999999999999999987543321                 333 245677999999999999999999999999


Q ss_pred             hhcccEEEEeCCCCce-EecCCcCCCCCCCCCCeEEEEeccCCCCCCCcccccc
Q 023075          233 CLRKHIMIYSGSFPDV-EMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVI  285 (287)
Q Consensus       233 ~l~~~I~V~~~~~~~~-~ig~e~~~~~~~~~~~~i~L~Y~~h~y~LGeHYnSl~  285 (287)
                      +|+|.|.|++.....+ .||+.-      .....+.|.|.      |.|||+|.
T Consensus       190 ~ygveI~vvDiqt~rid~fged~------~~~~rv~llyd------GIHYD~l~  231 (307)
T KOG3288|consen  190 YYGVEICVVDIQTVRIDRFGEDK------NFDNRVLLLYD------GIHYDPLA  231 (307)
T ss_pred             hhceeEEEEecceeeehhcCCCC------CCCceEEEEec------ccccChhh
Confidence            9999999999876544 466531      23568999998      89999874

>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.29  E-value=3.5e-12  Score=116.40  Aligned_cols=80  Identities=23%  Similarity=0.314  Sum_probs=51.6

Q ss_pred             cchhhh----HhHHHHHH-HhhcCCccCcHHHHHHHHHhhcccEEEEeCCCC--ceEec-CCcCCCCCCCCCCeEEEEec
Q 023075          200 SAQSQV----ERFENYCK-EVESTAAWGGELELRALTHCLRKHIMIYSGSFP--DVEMG-KEYSNGGSDSSGSSIILSYH  271 (287)
Q Consensus       200 fd~~~~----~~f~eY~~-~m~~~~~WGG~lEL~ALS~~l~~~I~V~~~~~~--~~~ig-~e~~~~~~~~~~~~i~L~Y~  271 (287)
                      |.+|+.    .+|++||. .|...+.=.+++.|.|||.+|+++|.|+..++.  ...++ ..|..+ .....+.|+|.|.
T Consensus       157 y~~fi~~~~~~tve~~C~~~Vep~~~Ead~v~i~ALa~aL~v~i~v~yld~~~~~~~~~~~~~~~~-~~~~~~~i~LLyr  235 (244)
T PF10275_consen  157 YEPFIDGLEYLTVEEFCSQEVEPMGKEADHVQIIALAQALGVPIRVEYLDRSVEGDEVNRHEFPPD-NESQEPQITLLYR  235 (244)
T ss_dssp             HGGGSSTT--S-HHHHHHHHTSSTT--B-HHHHHHHHHHHT--EEEEESSSSGCSTTSEEEEES-S-STTSS-SEEEEEE
T ss_pred             HhhhhcccccCCHHHHHHhhcccccccchhHHHHHHHHHhCCeEEEEEecCCCCCCccccccCCCc-cCCCCCEEEEEEc
Confidence            445553    67999997 488888999999999999999999999987754  11111 012100 1234788999998


Q ss_pred             cCCCCCCCccccccc
Q 023075          272 RHAFGLGEHYNSVIP  286 (287)
Q Consensus       272 ~h~y~LGeHYnSl~p  286 (287)
                      .      .|||-++|
T Consensus       236 p------gHYdIly~  244 (244)
T PF10275_consen  236 P------GHYDILYP  244 (244)
T ss_dssp             T------BEEEEEEE
T ss_pred             C------CccccccC
Confidence            5      59999987

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.

>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=2.4e-11  Score=117.35  Aligned_cols=118  Identities=22%  Similarity=0.253  Sum_probs=85.7

Q ss_pred             HHHHHHHhccCCceEEeeCCCCchHHHHHHHHHhcCCCCCC----------------cchhhhHhHHHHHHHhhcCCccC
Q 023075          159 DEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGEE----------------SAQSQVERFENYCKEVESTAAWG  222 (287)
Q Consensus       159 ~~~l~~~L~~~gL~i~~I~~DGnCLFrAIa~QL~~~~~~~~----------------fd~~~~~~f~eY~~~m~~~~~WG  222 (287)
                      ...+...+...|+.++.|..||+|+|||++|||++....+.                |..|+.++|..|+..++..+.||
T Consensus       206 ~~~~~~~~~~~g~e~~Kv~edGsC~fra~aDQvy~d~e~~~~~~~~~~dq~~~e~~~~~~~vt~~~~~y~k~kr~~~~~g  285 (371)
T KOG2605|consen  206 HERSAKRKKHFGFEYKKVVEDGSCLFRALADQVYGDDEQHDHNRRECVDQLKKERDFYEDYVTEDFTSYIKRKRADGEPG  285 (371)
T ss_pred             HHHHHHHHHHhhhhhhhcccCCchhhhccHHHhhcCHHHHHHHHHHHHHHHhhcccccccccccchhhcccccccCCCCc
Confidence            34445555788999999999999999999999999654431                67788899999999999999999


Q ss_pred             cHHHHHHHHH---hhcccEEEEeCCCCceE-ecCCcCCCCCCCCCCeEEEEeccCCCCCCCccccccc
Q 023075          223 GELELRALTH---CLRKHIMIYSGSFPDVE-MGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP  286 (287)
Q Consensus       223 G~lEL~ALS~---~l~~~I~V~~~~~~~~~-ig~e~~~~~~~~~~~~i~L~Y~~h~y~LGeHYnSl~p  286 (287)
                      .++|++|+|.   ....++.+.+...+.++ +.+.+.     .....+++.     |..-.||+.+++
T Consensus       286 nhie~Qa~a~~~~~~~~~~~~~~~~~t~~~~~~~~~~-----~~~~~~~~n-----~~~~~h~~~~~~  343 (371)
T KOG2605|consen  286 NHIEQQAAADIYEEIEKPLNITSFKDTCYIQTPPAIE-----ESVKMEKYN-----FWVEVHYNTARH  343 (371)
T ss_pred             chHHHhhhhhhhhhccccceeecccccceeccCcccc-----cchhhhhhc-----ccchhhhhhccc
Confidence            9999999996   44456666655555553 222221     112223333     344689998875

>KOG3991 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.06  E-value=1.7e-10  Score=104.03  Aligned_cols=78  Identities=17%  Similarity=0.248  Sum_probs=58.5

Q ss_pred             cchhhh--HhHHHHHHH-hhcCCccCcHHHHHHHHHhhcccEEEEeCCCCce-EecC-CcCCCCCCCCCCeEEEEeccCC
Q 023075          200 SAQSQV--ERFENYCKE-VESTAAWGGELELRALTHCLRKHIMIYSGSFPDV-EMGK-EYSNGGSDSSGSSIILSYHRHA  274 (287)
Q Consensus       200 fd~~~~--~~f~eY~~~-m~~~~~WGG~lEL~ALS~~l~~~I~V~~~~~~~~-~ig~-e~~~~~~~~~~~~i~L~Y~~h~  274 (287)
                      |.+|++  .+...||.. |.-.+.-.|||+|.|||+++++.|.|.-.+...- .++. .|.    ....|.|.|.|..  
T Consensus       174 y~pFI~e~~tV~~fC~~eVEPm~kesdhi~I~ALs~Al~i~irVey~dr~~~~~~~hH~fp----e~s~P~I~LLYrp--  247 (256)
T KOG3991|consen  174 YQPFIDEGMTVKAFCTQEVEPMYKESDHIHITALSQALGIRIRVEYVDRGSGDTVNHHDFP----EASAPEIYLLYRP--  247 (256)
T ss_pred             hhccCCCCCcHHHHHHhhcchhhhccCceeHHHHHhhhCceEEEEEecCCCCCCCCCCcCc----cccCceEEEEecC--
Confidence            455553  588999995 7777788999999999999999999987664322 2332 332    3457889999974  


Q ss_pred             CCCCCcccccccC
Q 023075          275 FGLGEHYNSVIPI  287 (287)
Q Consensus       275 y~LGeHYnSl~p~  287 (287)
                          .|||-|+|.
T Consensus       248 ----GHYdilY~~  256 (256)
T KOG3991|consen  248 ----GHYDILYKK  256 (256)
T ss_pred             ----CccccccCC
Confidence                699999983

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=97.71  E-value=6.6e-06  Score=76.84  Aligned_cols=97  Identities=14%  Similarity=0.138  Sum_probs=70.5

Q ss_pred             eCCCCchHHHHHHHHHhcCCCC--------------CCcchhh-hHhHHHHHHHhhcCCccC-cHHHHHHHHHhhcccEE
Q 023075          176 IKPDGHCLYRAVEDQLAHLSGG--------------EESAQSQ-VERFENYCKEVESTAAWG-GELELRALTHCLRKHIM  239 (287)
Q Consensus       176 I~~DGnCLFrAIa~QL~~~~~~--------------~~fd~~~-~~~f~eY~~~m~~~~~WG-G~lEL~ALS~~l~~~I~  239 (287)
                      ..+|..|+|++++..|+.-...              ..|.+.. ..+--.||.++.....|| |.+||.+||+.|++.|+
T Consensus       117 ~~~d~srl~q~~~~~l~~asv~~lrE~vs~Ev~snPDl~n~~i~~~~~i~y~~~i~k~d~~~dG~ieia~iS~~l~v~i~  196 (306)
T COG5539         117 GQDDNSRLFQAERYSLRDASVAKLREVVSLEVLSNPDLYNPAILEIDVIAYATWIVKPDSQGDGCIEIAIISDQLPVRIH  196 (306)
T ss_pred             CCCchHHHHHHHHhhhhhhhHHHHHHHHHHHHhhCccccchhhcCcchHHHHHhhhccccCCCceEEEeEeccccceeee
Confidence            3468899999999988763211              1154443 457789999999999999 99999999999999999


Q ss_pred             EEeCCCCc-eEecCCcCCCCCCCCCCeEEEEeccCCCCCCCcccccc
Q 023075          240 IYSGSFPD-VEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVI  285 (287)
Q Consensus       240 V~~~~~~~-~~ig~e~~~~~~~~~~~~i~L~Y~~h~y~LGeHYnSl~  285 (287)
                      |+..+... ..+++.       .....+.+.|.      |.|||+..
T Consensus       197 ~Vdv~~~~~dr~~~~-------~~~q~~~i~f~------g~hfD~~t  230 (306)
T COG5539         197 VVDVDKDSEDRYNSH-------PYVQRISILFT------GIHFDEET  230 (306)
T ss_pred             eeecchhHHhhccCC-------hhhhhhhhhhc------ccccchhh
Confidence            99987432 234421       11234666776      78999753

>PF05415 Peptidase_C36: Beet necrotic yellow vein furovirus-type papain-like endopeptidase; InterPro: IPR008746 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=91.43  E-value=0.36  Score=38.27  Aligned_cols=59  Identities=15%  Similarity=0.309  Sum_probs=45.3

Q ss_pred             eCCCCchHHHHHHHHHhcCCCCCCcchh---h---hHhHHHHHHHhh--cCCccCcHHHHHHHHHhhcccEEEEe
Q 023075          176 IKPDGHCLYRAVEDQLAHLSGGEESAQS---Q---VERFENYCKEVE--STAAWGGELELRALTHCLRKHIMIYS  242 (287)
Q Consensus       176 I~~DGnCLFrAIa~QL~~~~~~~~fd~~---~---~~~f~eY~~~m~--~~~~WGG~lEL~ALS~~l~~~I~V~~  242 (287)
                      |..|+|||.-||+..|..+     |+..   +   ..++..||.+++  .+.+|-+   -+.+|..|++.|.|--
T Consensus         3 ~sR~NNCLVVAis~~L~~T-----~e~l~~~M~An~~~i~~y~~W~r~~~~STW~D---C~mFA~~LkVsm~vkV   69 (104)
T PF05415_consen    3 ASRPNNCLVVAISECLGVT-----LEKLDNLMQANVSTIKKYHTWLRKKRPSTWDD---CRMFADALKVSMQVKV   69 (104)
T ss_pred             ccCCCCeEeehHHHHhcch-----HHHHHHHHHhhHHHHHHHHHHHhcCCCCcHHH---HHHHHHhheeEEEEEE
Confidence            5679999999999999653     4432   1   257899999876  4779965   5689999999988743

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases correspond to MEROPS peptidase family C36 (clan CA). The type example is beet necrotic yellow vein furovirus-type papain-like endopeptidase (beet necrotic yellow vein virus), which is involved in processing the viral polyprotein.

>PF14282 FlxA: FlxA-like protein

Probab=83.96  E-value=13  Score=29.98  Aligned_cols=61  Identities=18%  Similarity=0.348  Sum_probs=47.1

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023075           28 DEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL   89 (287)
Q Consensus        28 e~l~~RHrkE~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el~~rh~~EL~~l   89 (287)
                      +..+.+=.+.++.|+.+|..+.....-.++ .++.+++.|..+|..|++.|.+.+.+.-..-
T Consensus        18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e-~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~   78 (106)
T PF14282_consen   18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAE-QKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQ   78 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            778888899999999999998864221222 3356779999999999999998877766554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	287
3pfy_A	185	OTU domain-containing protein 5; structural genomi	1e-29
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	5e-21
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	3e-18
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	2e-17
1tff_A	234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	5e-04
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	5e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-04

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A* Length = 185

 Score =  110 bits (275), Expect = 1e-29
 Identities = 36/190 (18%), Positives = 58/190 (30%), Gaps = 28/190 (14%)

Query: 117 QHDQAKPSKGTKRREKRAQQEAAREQRIQ---EEQSNIVSDRTVEDEKLEKKLGPLGLTV 173
            H     S       + A   +  E        E  +  +    E    +      G  +
Sbjct: 2   HHHHHHSSGRENLYFQGAGYNSEDEYEAAAARIEAMDPATVEQQEHWFEKALRDKKGFII 61

Query: 174 NDIKPDGHCLYRAVEDQLAHLSGGEESAQSQV----------------ERFENYCKEVES 217
             +K DG CL+RAV DQ+       E  +                   E F  Y      
Sbjct: 62  KQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINRKRK 121

Query: 218 TAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGL 277
               G  +E++A+     + + +Y  S   +            +    I +SYHR+    
Sbjct: 122 NNCHGNHIEMQAMAEMYNRPVEVYQYSTEPINTFHGIHQ----NEDEPIRVSYHRN---- 173

Query: 278 GEHYNSVIPI 287
             HYNSV+  
Sbjct: 174 -IHYNSVVNP 182

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A Length = 185

 Score = 87.0 bits (215), Expect = 5e-21
 Identities = 20/137 (14%), Positives = 42/137 (30%), Gaps = 27/137 (19%)

Query: 171 LTVNDIKPDGHCLYRAVEDQLAHLSGGE--------------------ESAQSQVERFEN 210
             +     DG+C Y ++ +                               A+      E+
Sbjct: 31  FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEARLVGLSLED 90

Query: 211 YCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSY 270
           Y K + S   WG  LE   L   +   I+I++ +  D          G     +++ L +
Sbjct: 91  YLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGI--KFGDGDVFTAVNLLH 148

Query: 271 HRHAFGLGEHYNSVIPI 287
                    H++++  +
Sbjct: 149 SG-----QTHFDALRIL 160

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200} Length = 219

 Score = 80.2 bits (197), Expect = 3e-18
 Identities = 19/137 (13%), Positives = 42/137 (30%), Gaps = 27/137 (19%)

Query: 171 LTVNDIKPDGHCLYRAVEDQLAHLSGGEESAQSQVER--------------------FEN 210
             +     DG+C Y ++ +              +                        E+
Sbjct: 31  FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEARLVGLSLED 90

Query: 211 YCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSY 270
           Y K + S   WG  LE   L   +   I+I++ +  D    +     G     +++ L +
Sbjct: 91  YLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEV--EAGIKFGDGDVFTAVNLLH 148

Query: 271 HRHAFGLGEHYNSVIPI 287
                    H++++  +
Sbjct: 149 SG-----QTHFDALRIL 160

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A Length = 212

 Score = 77.7 bits (191), Expect = 2e-17
 Identities = 25/149 (16%), Positives = 54/149 (36%), Gaps = 36/149 (24%)

Query: 158 EDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGEESAQ---SQV--------- 205
             E      G   L+V+ +  D  CL+ A+   +      ++S +     V         
Sbjct: 7   STEMSIGGSGENVLSVHPVLDDNSCLFHAIAYGI----FKQDSVRDLREMVSKEVLNNPV 62

Query: 206 --------ERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNG 257
                   +  ++Y + +    +WGG +E+  ++  L   I +      D++  K     
Sbjct: 63  KFNDAILDKPNKDYAQWILKMESWGGAIEIGIISDALAVAIYVV-----DIDAVK-IEKF 116

Query: 258 GSDSSGSSIILSYHRHAFGLGEHYNSVIP 286
             D   + I++ ++      G HY+S+  
Sbjct: 117 NEDKFDNYILILFN------GIHYDSLTM 139

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11 Length = 234

 Score = 39.6 bits (92), Expect = 5e-04
 Identities = 26/172 (15%), Positives = 56/172 (32%), Gaps = 29/172 (16%)

Query: 135 QQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDG--HCLYRAVEDQL- 191
            +E  + +    +  N +     E+ K           V  ++ DG    L +   DQ  
Sbjct: 68  SREIFKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVELVEKDGSVSSLLKVFNDQSA 127

Query: 192 -------------AHLSGGEESAQSQVER---FENYC-KEVESTAAWGGELELRALTHCL 234
                        A +    +  +  ++     +++C  EVE  A     +++ AL+  L
Sbjct: 128 SDHIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQAL 187

Query: 235 RKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP 286
              + +    + D        +   +++  S+ L Y         HYN +  
Sbjct: 188 SIALQVE---YVDEMDTALNHHVFPEAATPSVYLLYK------TSHYNILYA 230

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A Length = 234

 Score = 39.7 bits (92), Expect = 5e-04
 Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 9/76 (11%)

Query: 208 FENYC-KEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSI 266
            + +C +EVE        + + AL   L   I +        E G    +   + S   +
Sbjct: 163 VKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVE--YMDRGEGGTTNPHIFPEGSEPKV 220

Query: 267 ILSYHRHAFGLGEHYN 282
            L Y         HY+
Sbjct: 221 YLLYR------PGHYD 230

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 33/202 (16%), Positives = 77/202 (38%), Gaps = 16/202 (7%)

Query: 21   QKKQETRDEMLSRHRKEISQLQNKETEL--KKAAAKGSKAEQKAKKKQVEEEISRLSAKL 78
             +     +EM  R   +  +L+    E+  +    +    + +A+KK++++++  L  +L
Sbjct: 905  TELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQL 964

Query: 79   REKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQ-- 136
             E+       L        EK   D  +K +    +I +    K +K  K  E+R     
Sbjct: 965  EEE-EAARQKL------QLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLT 1017

Query: 137  -EAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLS 195
               A E+   +  + + +       +LE +L     +  +++     + R +E + + L 
Sbjct: 1018 TNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEK----IKRKLEGESSDLH 1073

Query: 196  GGEESAQSQVERFENYCKEVES 217
                  Q+Q+   +    + E 
Sbjct: 1074 EQIAELQAQIAELKAQLAKKEE 1095

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	287
3pfy_A	185	OTU domain-containing protein 5; structural genomi	100.0
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	99.96
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.94
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.94
1tff_A	234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	99.84
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	99.82
4dhi_B	284	Ubiquitin thioesterase otubain-like; ubiquitin E2	99.7
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	99.67
3dkb_A	390	Tumor necrosis factor, alpha-induced protein 3; OT	98.38
3zrh_A	454	Ubiquitin thioesterase zranb1; hydrolase, deubiqui	98.14

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*

Probab=100.00  E-value=1.8e-35  Score=259.23  Aligned_cols=129  Identities=25%  Similarity=0.371  Sum_probs=93.4

Q ss_pred             HHhcccCCchhHHHHHHHHhccCCceEEeeCCCCchHHHHHHHHHhcCCCCC----------------CcchhhhHhHHH
Q 023075          147 EQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGE----------------ESAQSQVERFEN  210 (287)
Q Consensus       147 e~~~~~~~r~~E~~~l~~~L~~~gL~i~~I~~DGnCLFrAIa~QL~~~~~~~----------------~fd~~~~~~f~e  210 (287)
                      |+...++.|..|..-++..|+.+||.++.||+|||||||||++||++.+..+                .|.+|+.++|++
T Consensus        35 ~~~~~~~~~~~e~~~~~~l~~~~gL~~~~I~~DGnCLFrAia~qL~g~~~~h~~LR~~vv~yi~~n~d~f~~Fv~~~~e~  114 (185)
T 3pfy_A           35 EAMDPATVEQQEHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTT  114 (185)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHCCEEECCCCSTTHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHTHHHHTTCC------
T ss_pred             HhccCCCHHHHHHHHHHHHHHHCCcEEEeeCCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            4555566799999999999999999999999999999999999999876543                188888899999


Q ss_pred             HHHHhhcCCccCcHHHHHHHHHhhcccEEEEeCCCCceEe--cCCcCCCCCCCCCCeEEEEeccCCCCCCCccccccc
Q 023075          211 YCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEM--GKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP  286 (287)
Q Consensus       211 Y~~~m~~~~~WGG~lEL~ALS~~l~~~I~V~~~~~~~~~i--g~e~~~~~~~~~~~~i~L~Y~~h~y~LGeHYnSl~p  286 (287)
                      ||.+|+++++|||+|||+|||++|+++|+||+.+++++.+  |.+.      ...++|+|+||+     |+|||||++
T Consensus       115 Y~~~m~~~~~WGg~iEL~AlS~~~~v~I~V~~~~~~~i~i~~g~~~------~~~~~I~L~Y~~-----~~HYnSv~~  181 (185)
T 3pfy_A          115 YINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEPINTFHGIHQ------NEDEPIRVSYHR-----NIHYNSVVN  181 (185)
T ss_dssp             -----------CCHHHHHHHHHHHTSCEEEESSCSSCSEEECTTSC------CTTSCEEEEEET-----TTEEEEEEC
T ss_pred             HHHHhhCCCccchHHHHHHHHHhhCCcEEEEECCCCCeEEecCccC------CCCCEEEEEECC-----CCCcccccC
Confidence            9999999999999999999999999999999988765543  3322      236899999998     699999985

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A

Probab=99.96  E-value=1.1e-30  Score=233.35  Aligned_cols=106  Identities=18%  Similarity=0.334  Sum_probs=91.0

Q ss_pred             ccCCceEEeeCCCCchHHHHHHHHHhcCCCCC----------------Ccc-hhhhHhHHHHHHHhhcCCccCcHHHHHH
Q 023075          167 GPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGE----------------ESA-QSQVERFENYCKEVESTAAWGGELELRA  229 (287)
Q Consensus       167 ~~~gL~i~~I~~DGnCLFrAIa~QL~~~~~~~----------------~fd-~~~~~~f~eY~~~m~~~~~WGG~lEL~A  229 (287)
                      ...||.+++||+|||||||||++|| +.+..+                .|. .+++.+|++||.+|+++++|||+|||+|
T Consensus        16 ~~~~l~~~~i~~DGnCLFrAva~qL-~~~~~~~~lR~~vv~yi~~n~d~f~e~~~~~~~e~Y~~~m~~~~~WGg~iEL~A   94 (212)
T 3by4_A           16 GENVLSVHPVLDDNSCLFHAIAYGI-FKQDSVRDLREMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMESWGGAIEIGI   94 (212)
T ss_dssp             CCSEEEEECCCCSTTHHHHHHHHHH-HSSCCSHHHHHHHHHHHHHCTTTTCHHHHTSCHHHHHHHTTSTTSCCCHHHHHH
T ss_pred             CCCCeEEEEeCCCCchHHHHHHHHh-CCchHHHHHHHHHHHHHHHCHHHHhhhhcCCCHHHHHHHhcCCCEEccHHHHHH
Confidence            4457999999999999999999999 655443                175 4457899999999999999999999999


Q ss_pred             HHHhhcccEEEEeCCC-CceEecCCcCCCCCCCCCCeEEEEeccCCCCCCCccccccc
Q 023075          230 LTHCLRKHIMIYSGSF-PDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP  286 (287)
Q Consensus       230 LS~~l~~~I~V~~~~~-~~~~ig~e~~~~~~~~~~~~i~L~Y~~h~y~LGeHYnSl~p  286 (287)
                      ||++|+++|.||+.++ +.+.||+++       ..++|+|+|+      |+|||||++
T Consensus        95 ls~~~~~~I~V~~~~~~~~~~~~~~~-------~~~~I~L~Y~------g~HYdsl~~  139 (212)
T 3by4_A           95 ISDALAVAIYVVDIDAVKIEKFNEDK-------FDNYILILFN------GIHYDSLTM  139 (212)
T ss_dssp             HHHHHTCEEEEEETTTTEEEEESTTT-------CSEEEEEEEC------SSCEEEEEE
T ss_pred             HHHHHCCCEEEEECCCCCeEEeCCCC-------CCCeEEEEEc------CCcceEEec
Confidence            9999999999999874 566788754       2679999997      899999985

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A

Probab=99.94  E-value=9.7e-28  Score=210.20  Aligned_cols=105  Identities=19%  Similarity=0.347  Sum_probs=84.2

Q ss_pred             ceEEeeCCCCchHHHHHHHHHhcC-CCC-----CC--------------cchhhhHhHHHHHHHhhcCCccCcHHHHHHH
Q 023075          171 LTVNDIKPDGHCLYRAVEDQLAHL-SGG-----EE--------------SAQSQVERFENYCKEVESTAAWGGELELRAL  230 (287)
Q Consensus       171 L~i~~I~~DGnCLFrAIa~QL~~~-~~~-----~~--------------fd~~~~~~f~eY~~~m~~~~~WGG~lEL~AL  230 (287)
                      +.+..||+|||||||||++||+++ +..     +.              -+-+++++|++||.+|+++++|||++||+||
T Consensus        31 ~~v~rv~gDGnCLFrAva~qL~~~~~~~~~~~~~~~LR~~~~~yi~~~~~~~~~~~~~~~Y~~~m~~~~~WGg~iEL~Al  110 (185)
T 3phx_A           31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEARLVGLSLEDYLKRMLSDNEWGSTLEASML  110 (185)
T ss_dssp             EEEECCCSSTTHHHHHHHHHHSTTCCTTTHHHHHHHHHHHHHHHGGGCTTHHHHCCCHHHHHHHHTSTTCCCBHHHHHHH
T ss_pred             eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChHhhhcCCCHHHHHHHhhCCCccCcHHHHHHH
Confidence            778889999999999999999986 332     21              1112357899999999999999999999999


Q ss_pred             HHhhcccEEEEeCCCCc-----eEecCCcCCCCCCCCCCeEEEEeccCCCCCCCcccccccC
Q 023075          231 THCLRKHIMIYSGSFPD-----VEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI  287 (287)
Q Consensus       231 S~~l~~~I~V~~~~~~~-----~~ig~e~~~~~~~~~~~~i~L~Y~~h~y~LGeHYnSl~p~  287 (287)
                      |++|+++|.||+.+++.     +.+|++.       ..++|+|+|+.     |+|||||+|+
T Consensus       111 s~~~~v~I~V~~~d~~~~~~~i~~f~~~~-------~~~~I~L~Y~g-----~~HYdsl~~~  160 (185)
T 3phx_A          111 AKEMGITIIIWTVAASDEVEAGIKFGDGD-------VFTAVNLLHSG-----QTHFDALRIL  160 (185)
T ss_dssp             HHHHCCCEEEEEC--CCBCCEEEEESSCC-------TTTSEEEEEET-----TTEEEEEEEC
T ss_pred             HHHHCCcEEEEEecCCCCceEEEEcCCCC-------CCCEEEEEECC-----CcCchhceEC
Confidence            99999999999977654     4566543       26799999983     5999999874

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}

Probab=99.94  E-value=1.1e-27  Score=214.73  Aligned_cols=105  Identities=18%  Similarity=0.321  Sum_probs=85.7

Q ss_pred             ceEEeeCCCCchHHHHHHHHHhcCC-CC-----CC--------c------chhhhHhHHHHHHHhhcCCccCcHHHHHHH
Q 023075          171 LTVNDIKPDGHCLYRAVEDQLAHLS-GG-----EE--------S------AQSQVERFENYCKEVESTAAWGGELELRAL  230 (287)
Q Consensus       171 L~i~~I~~DGnCLFrAIa~QL~~~~-~~-----~~--------f------d~~~~~~f~eY~~~m~~~~~WGG~lEL~AL  230 (287)
                      +.+..||+|||||||||++||+++. ..     +.        |      +.+++++|++||.+|+++++|||++||+||
T Consensus        31 ~~V~rvpgDGnCLFrAVs~qL~~~~~~~~~~~~h~~LR~~va~yi~~n~d~~~~~~~feeY~~~m~~~g~WGG~iEL~Al  110 (219)
T 3phu_A           31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEARLVGLSLEDYLKRMLSDNEWGSTLEASML  110 (219)
T ss_dssp             EEEECCCCSSCHHHHHHHHHHCTTCCTTTHHHHHHHHHHHHHHHGGGCHHHHHHCCCHHHHHHHHHSTTCCCCHHHHHHH
T ss_pred             eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChhhhhcCCCHHHHHHHhcCCCccCCHHHHHHH
Confidence            7788999999999999999998863 22     11        1      112356899999999999999999999999


Q ss_pred             HHhhcccEEEEeCCCC-----ceEecCCcCCCCCCCCCCeEEEEeccCCCCCCCcccccccC
Q 023075          231 THCLRKHIMIYSGSFP-----DVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI  287 (287)
Q Consensus       231 S~~l~~~I~V~~~~~~-----~~~ig~e~~~~~~~~~~~~i~L~Y~~h~y~LGeHYnSl~p~  287 (287)
                      |++|+++|+||+.+++     .+.||++.       ..++|+|+|+.     |+|||||+|+
T Consensus       111 S~~~~v~I~V~~~d~~g~~~~i~~fge~~-------~~~~I~L~Y~g-----~~HYdSL~~~  160 (219)
T 3phu_A          111 AKEMGITIIIWTVAASDEVEAGIKFGDGD-------VFTAVNLLHSG-----QTHFDALRIL  160 (219)
T ss_dssp             HHHTTCCEEEEEESSSSBEEEEEEESSCC-------TTTSEEEEEET-----TTEEEEEEEC
T ss_pred             HHHhCCCEEEEEecCCCCceeEEEecCCC-------CCCeEEEEECC-----CcCchhheEC
Confidence            9999999999998766     34566543       26799999984     5999999974

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11

Probab=99.84  E-value=1.6e-21  Score=176.31  Aligned_cols=78  Identities=21%  Similarity=0.318  Sum_probs=60.1

Q ss_pred             cchhhhH--hHHHHHH-HhhcCCccCcHHHHHHHHHhhcccEEEEeCCCCceEe-cCCcCCCCCCCCCCeEEEEeccCCC
Q 023075          200 SAQSQVE--RFENYCK-EVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEM-GKEYSNGGSDSSGSSIILSYHRHAF  275 (287)
Q Consensus       200 fd~~~~~--~f~eY~~-~m~~~~~WGG~lEL~ALS~~l~~~I~V~~~~~~~~~i-g~e~~~~~~~~~~~~i~L~Y~~h~y  275 (287)
                      |.+|+.+  +|++||. .|+.+++|||||||+|||++|++||.|++.+++...+ ...|..    +..+.|+|.|+    
T Consensus       150 f~pFi~~~~~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~~~~~~~~~~~~~----~~~~~I~LlY~----  221 (234)
T 1tff_A          150 FRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPE----AATPSVYLLYK----  221 (234)
T ss_dssp             HGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCCC----CSSCSEEEEEE----
T ss_pred             HhhhhcCCCCHHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcCCCCCccccccCCC----CCCCeEEEEEC----
Confidence            5666644  8999999 7999999999999999999999999999988865222 223432    34678999998    


Q ss_pred             CCCCcccccccC
Q 023075          276 GLGEHYNSVIPI  287 (287)
Q Consensus       276 ~LGeHYnSl~p~  287 (287)
                        ++|||+|+|.
T Consensus       222 --pgHYdily~~  231 (234)
T 1tff_A          222 --TSHYNILYAA  231 (234)
T ss_dssp             --TTEEEEEEEC
T ss_pred             --CCCceecccC
Confidence              4699999984

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A

Probab=99.82  E-value=1.1e-20  Score=170.74  Aligned_cols=77  Identities=17%  Similarity=0.235  Sum_probs=60.6

Q ss_pred             cchhhhH--hHHHHHH-HhhcCCccCcHHHHHHHHHhhcccEEEEeCCCCce--EecCCcCCCCCCCCCCeEEEEeccCC
Q 023075          200 SAQSQVE--RFENYCK-EVESTAAWGGELELRALTHCLRKHIMIYSGSFPDV--EMGKEYSNGGSDSSGSSIILSYHRHA  274 (287)
Q Consensus       200 fd~~~~~--~f~eY~~-~m~~~~~WGG~lEL~ALS~~l~~~I~V~~~~~~~~--~ig~e~~~~~~~~~~~~i~L~Y~~h~  274 (287)
                      |.+|+.+  +|++||. .|+.+++|||||||+|||++|++||.|++.+++..  ..+..|..    +..++|+|+|+.  
T Consensus       153 f~pFi~~~~~~e~yc~~~ve~~~~~~~~i~i~ALa~al~v~I~V~~~d~~~~~~v~~~~f~~----~~~p~I~LlY~p--  226 (234)
T 2zfy_A          153 FEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPE----GSEPKVYLLYRP--  226 (234)
T ss_dssp             HGGGCCSSCCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-CCSSCCEEEEEST----TCCCSEEEEEET--
T ss_pred             HhcccCCCCCHHHHHHHHhhhHhhcCCHHHHHHHHHHhCCCEEEEEcCCCCCCcccceeCCC----CCCCeEEEEECC--
Confidence            5566543  8999998 69999999999999999999999999999876541  12234432    246789999985  


Q ss_pred             CCCCCccccccc
Q 023075          275 FGLGEHYNSVIP  286 (287)
Q Consensus       275 y~LGeHYnSl~p  286 (287)
                          +|||+|+|
T Consensus       227 ----gHYdiLy~  234 (234)
T 2zfy_A          227 ----GHYDILYK  234 (234)
T ss_dssp             ----TEEEEEEC
T ss_pred             ----CCcccCCC
Confidence                59999998

>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A

Probab=99.70  E-value=1.1e-17  Score=154.90  Aligned_cols=81  Identities=17%  Similarity=0.179  Sum_probs=60.3

Q ss_pred             cchhhh--HhHHHHHH-HhhcCCccCcHHHHHHHHHhhcccEEEEeCCCCc-eEecC-C-cCCCCCCCCCCeEEEEeccC
Q 023075          200 SAQSQV--ERFENYCK-EVESTAAWGGELELRALTHCLRKHIMIYSGSFPD-VEMGK-E-YSNGGSDSSGSSIILSYHRH  273 (287)
Q Consensus       200 fd~~~~--~~f~eY~~-~m~~~~~WGG~lEL~ALS~~l~~~I~V~~~~~~~-~~ig~-e-~~~~~~~~~~~~i~L~Y~~h  273 (287)
                      |.+|+.  .++++||. .|+.++.|||||+|+|||++|++||.|+..++.. ..+.. . |.. +.....+.|+|.|.  
T Consensus       188 f~pFi~~~~~v~~yC~~eVe~~~~e~d~leI~ALa~aL~v~I~V~ylDrs~g~~v~~h~~fp~-~~~~~~p~I~LLYr--  264 (284)
T 4dhi_B          188 YAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYDIPS-DDQQIAPEITLLYR--  264 (284)
T ss_dssp             HGGGSCTTCCHHHHHHHHTSSTTCCCCHHHHHHHHHHTTCCEEEEESSGGGCTTSSSEEEESC-CCSCCCCSEEEEEE--
T ss_pred             HHhhcCCCCCHHHHHHHhceehhhcccHHHHHHHHHHhCCcEEEEEecCCCCCCCcccccCCC-CCCCCCCEEEEeec--
Confidence            667764  37999999 8999999999999999999999999999876521 11111 1 311 11123478999998  


Q ss_pred             CCCCCCcccccccC
Q 023075          274 AFGLGEHYNSVIPI  287 (287)
Q Consensus       274 ~y~LGeHYnSl~p~  287 (287)
                          +.|||-|+|.
T Consensus       265 ----pgHYDILY~~  274 (284)
T 4dhi_B          265 ----PGHYDVIYKK  274 (284)
T ss_dssp             ----TTEEEEEEEC
T ss_pred             ----CCCccccccC
Confidence                5799999973

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=99.67  E-value=5.6e-17  Score=156.59  Aligned_cols=77  Identities=17%  Similarity=0.242  Sum_probs=59.1

Q ss_pred             cchhhhH--hHHHHHH-HhhcCCccCcHHHHHHHHHhhcccEEEEeCCCC-ceEecC-CcCCCCCCCCCCeEEEEeccCC
Q 023075          200 SAQSQVE--RFENYCK-EVESTAAWGGELELRALTHCLRKHIMIYSGSFP-DVEMGK-EYSNGGSDSSGSSIILSYHRHA  274 (287)
Q Consensus       200 fd~~~~~--~f~eY~~-~m~~~~~WGG~lEL~ALS~~l~~~I~V~~~~~~-~~~ig~-e~~~~~~~~~~~~i~L~Y~~h~  274 (287)
                      |.+|+.+  ++++||. .|..+++|||||+|+|||++|+++|.|+..++. ...+.. .|.    .+..+.|+|.|..  
T Consensus       318 f~pFi~~~~~v~~yc~~~ve~~~~e~d~l~I~ALa~al~v~I~V~yld~~~~~~v~~~~~~----~~~~~~I~LLYrP--  391 (399)
T 4ddg_A          318 FEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFP----EGSEPKVYLLYRP--  391 (399)
T ss_dssp             HGGGSSSSCCHHHHHHHHTSSTTCCBCHHHHHHHHHHHTCCCEEEECSCCSSSCCCEEETT----TTCCCCCEEEEET--
T ss_pred             HhcccCCCCCHHHHHHHhceeHHhhCcHHHHHHHHHHcCCcEEEEEcCCCCCCccceeeCC----CCCCCEEEEEEcC--
Confidence            4555543  7999999 899999999999999999999999999976652 211221 121    1246789999986  


Q ss_pred             CCCCCccccccc
Q 023075          275 FGLGEHYNSVIP  286 (287)
Q Consensus       275 y~LGeHYnSl~p  286 (287)
                          .|||.|+|
T Consensus       392 ----gHYDiLY~  399 (399)
T 4ddg_A          392 ----GHYDILYK  399 (399)
T ss_dssp             ----BEEEEEEC
T ss_pred             ----CccccCCC
Confidence                49999987

>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A

Probab=98.38  E-value=5.9e-07  Score=85.10  Aligned_cols=113  Identities=18%  Similarity=0.321  Sum_probs=70.9

Q ss_pred             CCceEEeeCCCCchHHHHHHHHHhcCCCCCC-----------------c-----------chh-------h----hHhHH
Q 023075          169 LGLTVNDIKPDGHCLYRAVEDQLAHLSGGEE-----------------S-----------AQS-------Q----VERFE  209 (287)
Q Consensus       169 ~gL~i~~I~~DGnCLFrAIa~QL~~~~~~~~-----------------f-----------d~~-------~----~~~f~  209 (287)
                      ..|......||||||.+|++..+++.++...                 |           ..|       +    ..+|+
T Consensus       110 ~rL~pL~t~GDGnCLLHAvSqamWGv~DrdlvLRkaL~~~L~~~~~~~fr~RW~~e~~~~q~~~~~gL~y~e~ew~~EW~  189 (390)
T 3dkb_A          110 RKLVALKTNGDGNCLMHATSQYMWGVQDTDLVLRKALFSTLKETDTRNFKFRWQLESLKSQEFVETGLCYDTRNWNDEWD  189 (390)
T ss_dssp             CCEEEBCCCCSSCHHHHHHHHHHHSSCSTTCHHHHHHHHHHHHSCCHHHHHHHHHHHHCCCSSCC----CCSSCSSHHHH
T ss_pred             cceEEEEecCCCchHHHHHhHHhcCCCCHhHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhhhHhhcccccHHHHHHHHH
Confidence            3477788999999999999999999776531                 0           001       1    13444


Q ss_pred             HHHHHhhcCCc-------c--CcHHHHHHHHHhhcccEEEEeCC-------CC---ceEecCCcCC---CCCCCCCCeEE
Q 023075          210 NYCKEVESTAA-------W--GGELELRALTHCLRKHIMIYSGS-------FP---DVEMGKEYSN---GGSDSSGSSII  267 (287)
Q Consensus       210 eY~~~m~~~~~-------W--GG~lEL~ALS~~l~~~I~V~~~~-------~~---~~~ig~e~~~---~~~~~~~~~i~  267 (287)
                      .-+...+.+..       +  =-++-+.+||++|++||+||...       |.   ++.||.=|..   ++......||.
T Consensus       190 ~Iv~~Asp~~~~~~~~~~y~sLEeiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~rsPI~  269 (390)
T 3dkb_A          190 NLIKMASTDTPMARSGLQYNSLEEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYRYPIV  269 (390)
T ss_dssp             HHHHHTSSCCCSSSSSCSSCCCCHHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTSSCSSCEE
T ss_pred             HHHHHhCCCCCCCCCcchhhhHHHHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHHccCCceE
Confidence            43433332211       1  12678999999999999999532       11   1223321221   12345567999


Q ss_pred             EEeccCCCCCCCcccccccC
Q 023075          268 LSYHRHAFGLGEHYNSVIPI  287 (287)
Q Consensus       268 L~Y~~h~y~LGeHYnSl~p~  287 (287)
                      |+|.+      .||.+|+++
T Consensus       270 LgY~s------~HFsaLV~m  283 (390)
T 3dkb_A          270 LGYDS------HHFVPLVTL  283 (390)
T ss_dssp             EEECS------SCEEEEEEB
T ss_pred             EEecc------Cceeeeeec
Confidence            99996      699999863

>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}

Probab=98.14  E-value=6.2e-06  Score=79.39  Aligned_cols=111  Identities=19%  Similarity=0.205  Sum_probs=74.2

Q ss_pred             CceEEeeCCCCchHHHHHHHHHhcCCCCCC-------------------------------c-chhh--h----HhHHHH
Q 023075          170 GLTVNDIKPDGHCLYRAVEDQLAHLSGGEE-------------------------------S-AQSQ--V----ERFENY  211 (287)
Q Consensus       170 gL~i~~I~~DGnCLFrAIa~QL~~~~~~~~-------------------------------f-d~~~--~----~~f~eY  211 (287)
                      .|......||||||-+|++-.+++.+....                               | -.|+  +    .+|+.-
T Consensus       188 rL~pL~t~GDGNCLLHAvSqamWGV~DrdlvLRkaL~~~L~~~~~~f~~RW~~~e~~q~q~~gL~y~lde~ewq~EW~~i  267 (454)
T 3zrh_A          188 RLYALWNRTAGDCLLDSVLQATWGIYDKDSVLRKALHDSLHDCSHWFYTRWKDWESWYSQSFGLHFSLREEQWQEDWAFI  267 (454)
T ss_dssp             CEEEBCCCCSSCHHHHHHHHTTTSSCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHH
T ss_pred             ceeEeeecCCCccHHHHHHHHhhcccCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHH
Confidence            367778999999999999999999776421                               1 0111  2    345555


Q ss_pred             HHHhhcCCccCcHHHHHHHHHhhcccEEEEeCCC---------CceEecCCcC---CCCCCCCCCeEEEEeccCCCCCCC
Q 023075          212 CKEVESTAAWGGELELRALTHCLRKHIMIYSGSF---------PDVEMGKEYS---NGGSDSSGSSIILSYHRHAFGLGE  279 (287)
Q Consensus       212 ~~~m~~~~~WGG~lEL~ALS~~l~~~I~V~~~~~---------~~~~ig~e~~---~~~~~~~~~~i~L~Y~~h~y~LGe  279 (287)
                      +...+.++.==-+|-+.+||++|++||+||....         +++.||.=|.   -++......||.|+|.+      .
T Consensus       268 v~~As~Pg~sLEeiHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~rsPIvLgY~~------g  341 (454)
T 3zrh_A          268 LSLASQPGASLEQTHIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWKSPIALGYTR------G  341 (454)
T ss_dssp             HHHTTSTTCCCCHHHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSCSCCEEEEEET------T
T ss_pred             HHHhcCCcchHHHHHHHHHHHHhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhcCCceEEEecc------c
Confidence            5555566554456779999999999999997532         1122332121   11123456899999997      5


Q ss_pred             ccccccc
Q 023075          280 HYNSVIP  286 (287)
Q Consensus       280 HYnSl~p  286 (287)
                      ||.+|++
T Consensus       342 HFsaLV~  348 (454)
T 3zrh_A          342 HFSALVA  348 (454)
T ss_dssp             EEEEEEE
T ss_pred             ceeeeee
Confidence            9999886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	287
d1tffa_	228	d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB	9e-08

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (118), Expect = 9e-08
 Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 10/82 (12%)

Query: 206 ERFENYCK-EVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGS 264
              +++C  EVE  A     +++ AL+  L   + +    + D        +   +++  
Sbjct: 152 MDIKDFCTHEVEPMATECDHIQITALSQALSIALQVE---YVDEMDTALNHHVFPEAATP 208

Query: 265 SIILSYHRHAFGLGEHYNSVIP 286
           S+ L Y         HYN +  
Sbjct: 209 SVYLLYK------TSHYNILYA 224

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	287
d1tffa_	228	Ubiquitin thiolesterase protein OTUB2 (Otubain-2)	99.78

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=7.2e-20  Score=162.16  Aligned_cols=78  Identities=18%  Similarity=0.296  Sum_probs=57.3

Q ss_pred             cchhhh--HhHHHHHHH-hhcCCccCcHHHHHHHHHhhcccEEEEeCCCCceEecC-CcCCCCCCCCCCeEEEEeccCCC
Q 023075          200 SAQSQV--ERFENYCKE-VESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGK-EYSNGGSDSSGSSIILSYHRHAF  275 (287)
Q Consensus       200 fd~~~~--~~f~eY~~~-m~~~~~WGG~lEL~ALS~~l~~~I~V~~~~~~~~~ig~-e~~~~~~~~~~~~i~L~Y~~h~y  275 (287)
                      |.+|+.  .++++||.+ |..+++|||++||.|||.+|+++|.|+..+++...+.. .|.    ....++|+|.|.    
T Consensus       144 y~~Fi~~~~~~~~yc~~~v~~~~~e~d~ieI~aLa~al~v~I~V~~~d~~~~~~~~~~~~----~~~~~~I~Lly~----  215 (228)
T d1tffa_         144 FRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFP----EAATPSVYLLYK----  215 (228)
T ss_dssp             HGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCC----CCSSCSEEEEEE----
T ss_pred             HHhHhcCCccHHHHHHHHHccccccCCcHHHHHHHHHhCCCEEEEEecCCCCccccccCC----CCCCCEEEEEeC----
Confidence            344442  478999986 99999999999999999999999999988765433321 221    234678999997    


Q ss_pred             CCCCcccccccC
Q 023075          276 GLGEHYNSVIPI  287 (287)
Q Consensus       276 ~LGeHYnSl~p~  287 (287)
                        +.|||.|+|.
T Consensus       216 --pgHYdiLY~~  225 (228)
T d1tffa_         216 --TSHYNILYAA  225 (228)
T ss_dssp             --TTEEEEEEEC
T ss_pred             --CCCcccCccC
Confidence              4699999984