Citrus Sinensis ID: 023077

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------
Protein Sequence
MAVVVGNLALLLDVASPRTLITDRKSRPLALDVLLNLPKRDLHLNYSALANKSLDSEGESWNHRVVTRGKVNSKVNAVDFDAGSSDEENGNGNGEKEEYDWEKEMRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQAPKLKISQEEMVTIPLIGSSYDSSMSVHWNMLGS
Secondary Structure (PSIPRED)
cccccccHHHHcccccccEEEccccccccHHHHHHcccccccccHHHHHHHHccccccccccHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEEEEEcccccEEccccccccccEEEEEEcccccccccccEcccccccccccccccEEEEEEccccccccEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccHHHHcEccccccccccHHcccHHHccc
Coil and Loop (DISEMBL)
MAVVVGNLALLldvasprtlitdrksrpLALDVLlnlpkrdlhlNYSALANKsldsegeswnhrvvtrgkvnskvnavdfdagssdeengngngekeeYDWEKEMRRRVKEIEEMRELEKKAEELQSKaeeddseseakEETEEEKRMRVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGaltiiprptffggEIQIWLAMAYEANNRHADCIALYKQlesnhpskniRRQAADLRYILQapklkisqeemvtipligssydssMSVHWNMLGS
Flexible Loop (DISEMBL)
MAVVVGNLAllldvasprtlitdrksrplALDVLLNLPKRDLHLNYSALANksldsegeswnhrvvtrgkvnskvnavdfdagssdeengngngekeeydwekEMRRRVKEIEEMRELEKKaeelqskaeeddseseakeeteeekrmRVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQApklkisqeemVTIPLigssydssmsVHWNMLGS
Low Complexity Region (SEG)
MAVVVGNLALLLDVASPRTLITDRKSRPLALDVLLNLPKRDLHLNYSALANKSLDSEGESWNHRVVTRGKVNSKVNAVDFDAGSSDeengngngekeeYDWEKEMRRRVkeieemrelekkaeeLQSkaeeddseseakeeteeekrmrvrrelekvAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQAPKLKISQEEMVTIPLIGSSYDSSMSVHWNMLGS
Disordered region (IsUnstruct)
**VVVGNLALLLDVASPRTLITDRKSRPLALDVLLNLPKRDLHLNYSALAN*********WNHRVVT*****************************************************************************************************QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE********RRQAADLRYILQAPKLKISQEEMVTIPLIGSSY*************
Disordered Region (DISOPRED)
*****GNLALLLDVASPRTLITDRKSRPLALDVLLNLPKRDLH*N********LDSEGESWNHR**********************************************************************************************************MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQAPKLKISQEEMVTIPLIG****************
Disordered Region (DISEMBL)
MAVVVGNLALLLDVASPRTLITDRKSRPLALDVLLNLPKRDLHLNYSALANKSLDSEGESWNHRVVTRGKVNSKVNAVDFDAG********************EMRRRVKEIEEMR**********************************RRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQAPKLKISQEEMVTIPLIGSSYDSSMSVHWNMLGS
Disordered Region (DISPRO)
MAVVVGNLALLLDVASPRTLITDRKSRPLALDVLLNLPKRDLHLNYSALANKSLDSEGESWNHRVVTRGKVNS*************************YDWEKEMRRRVKEIEEMRELEKKAEELQSKAEE*************EKRMRVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQAPKLKISQEEMVTIPLIGSSYDSSMSVHWN****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVVVGNLALLLDVASPRTLITDRKSRPLALDVLLNLPKRDLHLNYSALANKSLDSEGESWNHRVVTRGKVNSKVNAVDFDAGSSDEENGNGNGEKEEYDWxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQAPKLKISQEEMVTIPLIGSSYDSSMSVHWNMLGS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	287
449434973	343	PREDICTED: uncharacterized protein LOC10	0.947	0.793	0.745	1e-105
255574017	345	conserved hypothetical protein [Ricinus	0.944	0.785	0.765	1e-104
225470567	346	PREDICTED: uncharacterized protein LOC10	0.940	0.780	0.721	1e-103
297814880	349	binding protein [Arabidopsis lyrata subs	0.961	0.790	0.659	8e-99
15231576	350	uncharacterized protein [Arabidopsis tha	0.961	0.788	0.650	1e-96
312281531	354	unnamed protein product [Thellungiella h	0.961	0.779	0.648	4e-94
357517317	321	hypothetical protein MTR_8g069450 [Medic	0.885	0.791	0.676	5e-88
2253092	339	hypothetical protein [Spinacia oleracea]	0.923	0.781	0.593	3e-85
356563260	328	PREDICTED: uncharacterized protein LOC10	0.843	0.737	0.674	9e-76
388523007	254	unknown [Medicago truncatula]	0.815	0.921	0.639	3e-75

>gi|449434973|ref|XP_004135270.1| PREDICTED: uncharacterized protein LOC101221356 [Cucumis sativus] gi|449521583|ref|XP_004167809.1| PREDICTED: uncharacterized protein LOC101229482 [Cucumis sativus]

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/279 (74%), Positives = 239/279 (85%), Gaps = 7/279 (2%)

Query: 1   MAVVVGNLALLLDVASPRTLITDRKSRPLALDVLLNLPKRDLHLNYSALANKSLDSEGES 60
           MAVV+GN ALLLDV SPR ++ DRK+RPLALDV+L+L KRDL+  Y+A+  KS +++GE+
Sbjct: 1   MAVVLGNWALLLDVTSPRIVLADRKARPLALDVVLSLHKRDLNAYYAAIVGKSFEADGEA 60

Query: 61  WNHRVVTRGKVNSKVNA-VDFDAGSSDEENGNGNG--EKEEYDWEKEMRRRVKEIEEMRE 117
            + R+V RGK NSK N  V+F+  S +EEN   NG  E+E+ DWE+EMR+RVKEIEE RE
Sbjct: 61  RSQRIVARGKANSKKNGGVEFE--SDEEENWESNGLDEEEKLDWEQEMRKRVKEIEERRE 118

Query: 118 LEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLMFELGQK 177
           LEKKAEE+QS+ EE    SE  EETEEEKRMRVR+ELEKVAKEQAERRATA+LMFELGQK
Sbjct: 119 LEKKAEEIQSQVEE--EGSEGIEETEEEKRMRVRKELEKVAKEQAERRATAELMFELGQK 176

Query: 178 AYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237
           AYG+GMY RAIEFLEGALTIIPRPT FGGEIQIWLAMAYEANNRH DCIALY+QLE  HP
Sbjct: 177 AYGRGMYSRAIEFLEGALTIIPRPTLFGGEIQIWLAMAYEANNRHGDCIALYRQLEKTHP 236

Query: 238 SKNIRRQAADLRYILQAPKLKISQEEMVTIPLIGSSYDS 276
           S +IRRQAA+LRYILQAPK+KISQEEMVTIPLIGSSYDS
Sbjct: 237 SVSIRRQAAELRYILQAPKIKISQEEMVTIPLIGSSYDS 275

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574017|ref|XP_002527926.1| conserved hypothetical protein [Ricinus communis] gi|223532701|gb|EEF34483.1| conserved hypothetical protein [Ricinus communis]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 216/282 (76%), Positives = 240/282 (85%), Gaps = 11/282 (3%)

Query: 1   MAVVVGNLALLLDVASPRTLITDRKSRPLALDVLLNLPKRDLH---LNYSALANKSLDSE 57
           MAVV GNLALLLDV SP  ++ +RK RP+++DV+LNLPKRD H    +  +L +KS +S 
Sbjct: 1   MAVVGGNLALLLDVISPWAVVLERKMRPVSVDVVLNLPKRDHHHHTCSSVSLGSKSFESG 60

Query: 58  G-ESWNHRVVTRGKVNSKVNAVDFDAGSSDEENG-NGNGEKEE-YDWEKEMRRRVKEIEE 114
           G ES   RVVTRGK NSK+N VDFD   SDEE+G NG GE+E    WEKEMR+RVKEIEE
Sbjct: 61  GKESRKQRVVTRGKANSKMNGVDFD---SDEESGSNGEGEEEPALGWEKEMRKRVKEIEE 117

Query: 115 MRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLMFEL 174
           MRELEKKAEELQSKAEE  +ESE +EETEEEKRMRVR+ELEKVA+EQAERR TAQLMFEL
Sbjct: 118 MRELEKKAEELQSKAEE--TESEDREETEEEKRMRVRKELEKVAREQAERRETAQLMFEL 175

Query: 175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES 234
           GQKAYGKGMY RAIEFLE ALTIIPR T FGGEIQIWLAMAYEANNRH DCIALY+QLE 
Sbjct: 176 GQKAYGKGMYARAIEFLEAALTIIPRSTLFGGEIQIWLAMAYEANNRHKDCIALYRQLEM 235

Query: 235 NHPSKNIRRQAADLRYILQAPKLKISQEEMVTIPLIGSSYDS 276
           +HPS +IRRQAA+LRYILQAPKLKISQEEMVTIPLIGS+YDS
Sbjct: 236 SHPSISIRRQAANLRYILQAPKLKISQEEMVTIPLIGSAYDS 277

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470567|ref|XP_002272662.1| PREDICTED: uncharacterized protein LOC100264929 [Vitis vinifera]

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 205/284 (72%), Positives = 232/284 (81%), Gaps = 14/284 (4%)

Query: 1   MAVVVGNLALLLDVASPRTLITDRKSRPLALDVLLNLPKRDLHLN---YSALANKSLDSE 57
           MAVV+GN+ALLLDV SP T I DRK+R  + +V+LNL KRD H +   Y++LA KS +S+
Sbjct: 1   MAVVLGNIALLLDVTSPLTGIPDRKARTASHEVVLNLSKRDSHHSTNAYASLATKSFESD 60

Query: 58  GESWNHRVVTRGKVNSKVNAVDFDAGSSDEENGNGNGEKE-----EYDWEKEMRRRVKEI 112
           GE+ NHRVV RGK NSKVN VD DAGSSDEE        +      +DWEK MR+R+KEI
Sbjct: 61  GEARNHRVVARGKANSKVNGVDSDAGSSDEEGNGNGNGNDDEDEETFDWEKAMRKRMKEI 120

Query: 113 EEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLMF 172
           EEM+ELE KAEELQS+       +E +EE+EEEKRMRVR+ELEKVAKEQAERRATAQLMF
Sbjct: 121 EEMKELEMKAEELQSRV------AEGQEESEEEKRMRVRKELEKVAKEQAERRATAQLMF 174

Query: 173 ELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQL 232
           +LGQ+AYGKG Y RAIEF EGALTIIP PT FGGEIQIWLAMAYEANNRHADCIALY+QL
Sbjct: 175 DLGQRAYGKGTYSRAIEFFEGALTIIPPPTLFGGEIQIWLAMAYEANNRHADCIALYQQL 234

Query: 233 ESNHPSKNIRRQAADLRYILQAPKLKISQEEMVTIPLIGSSYDS 276
           E  HPS +IRRQAADLRYILQAPKLKI+QEEMVTIPLIGSSYDS
Sbjct: 235 ERKHPSVSIRRQAADLRYILQAPKLKITQEEMVTIPLIGSSYDS 278

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297814880|ref|XP_002875323.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297321161|gb|EFH51582.1| binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  366 bits (939), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 194/294 (65%), Positives = 231/294 (78%), Gaps = 18/294 (6%)

Query: 1   MAVVVGNLALLLDVASPRTLITDRKSRPLALDVLLNLPKRDLHLN---YSALA-NKSLDS 56
           MA V+GN+ALLLDV S RT++TDR+ R   +DV+LNLPKRD H +   Y+AL+ NK L+S
Sbjct: 1   MAAVIGNVALLLDVNSHRTVVTDRRIRLTVVDVVLNLPKRDSHSHVSHYAALSSNKPLES 60

Query: 57  EGESWNHRVVTRGKVNSKVNAVDFDAGSSDEENGNGNGEKEE-------YDWEKEMRRRV 109
           +GE+   R +TRGK NS+ NAVDFD   S +E  +  G           +D EKE +RR 
Sbjct: 61  DGEARIRRFLTRGKANSRANAVDFDDAGSSDEESSDGGGGGGDEEEEEDFDVEKERKRRA 120

Query: 110 KEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQ 169
           KE ++M+ELE+KAEELQ K +E+  +SE      E+KRMRV+REL+KVA+EQAERR TA+
Sbjct: 121 KEFQDMKELERKAEELQYKIDEEGDDSE------EKKRMRVKRELQKVAQEQAERRKTAE 174

Query: 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALY 229
           LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT FGGEIQIWLAMAYEANNRHADCI LY
Sbjct: 175 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTLFGGEIQIWLAMAYEANNRHADCIDLY 234

Query: 230 KQLESNHPSKNIRRQAADLRYILQAPKLKISQEEMVTIPLIGSSYDSSMSVHWN 283
           +QLE  HPS  IRRQA++LRYILQAPKLKISQEEMVTIP+IGSSYD S +V W+
Sbjct: 235 QQLEKKHPSPGIRRQASELRYILQAPKLKISQEEMVTIPMIGSSYD-SYAVTWS 287

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231576|ref|NP_189290.1| uncharacterized protein [Arabidopsis thaliana] gi|1402877|emb|CAA66827.1| hypothetical protein [Arabidopsis thaliana] gi|1495257|emb|CAA66117.1| orf03 [Arabidopsis thaliana] gi|9293937|dbj|BAB01840.1| unnamed protein product [Arabidopsis thaliana] gi|22655244|gb|AAM98212.1| unknown protein [Arabidopsis thaliana] gi|28059607|gb|AAO30074.1| unknown protein [Arabidopsis thaliana] gi|110742431|dbj|BAE99134.1| hypothetical protein [Arabidopsis thaliana] gi|332643661|gb|AEE77182.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  359 bits (921), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 192/295 (65%), Positives = 228/295 (77%), Gaps = 19/295 (6%)

Query: 1   MAVVVGNLALLLDVASPRTLITDRKSRPLALDVLLNLPKRDLHLN---YSALA-NKSLDS 56
           MA V+GN+ALLLDV S RT++TDR+ R   +DV+LNL KRD H +   Y+AL+ NK L+S
Sbjct: 1   MAAVIGNVALLLDVNSHRTVVTDRRIRLTVVDVVLNLQKRDSHSHVSHYAALSSNKPLES 60

Query: 57  EGESWNHRVVTRGKVNSKVNAVDFDAGSSDEENGNGNGEKEE--------YDWEKEMRRR 108
           +GE+   R +TRGK NS+ NAVDFD   S +E  +  G            +D EKE +RR
Sbjct: 61  DGEARVRRFLTRGKANSRANAVDFDDAGSSDEESSDGGGGGGDEEEEEEYFDVEKERKRR 120

Query: 109 VKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATA 168
            KE  + +ELE+KAEELQ K +E+  +SE      E+KRMRV+REL+KVA+EQAERR TA
Sbjct: 121 AKEFHDTKELERKAEELQYKIDEEGDDSE------EKKRMRVKRELQKVAQEQAERRKTA 174

Query: 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIAL 228
           +LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT FGGEIQIWLAMAYEANNRHADCI L
Sbjct: 175 ELMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTLFGGEIQIWLAMAYEANNRHADCIDL 234

Query: 229 YKQLESNHPSKNIRRQAADLRYILQAPKLKISQEEMVTIPLIGSSYDSSMSVHWN 283
           Y+QLE  HPS  IRRQA++LRYILQAPKLKISQEEMVTIP+IGSSYD S +V W+
Sbjct: 235 YQQLEKKHPSPGIRRQASELRYILQAPKLKISQEEMVTIPMIGSSYD-SYAVTWS 288

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281531|dbj|BAJ33631.1| unnamed protein product [Thellungiella halophila]

 Score =  350 bits (898), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 194/299 (64%), Positives = 230/299 (76%), Gaps = 23/299 (7%)

Query: 1   MAVVVGNLALLLDVASPRTLITDRKSRPLALDVLLNLP--KRDLHLN--YSALA-NKSLD 55
           MA V+GN+ALLLDV S R ++TDR+ R    D++LNL   KRD H +  Y+AL+ NK L+
Sbjct: 1   MAAVIGNVALLLDVNSHRAVVTDRRIRLTVADIVLNLQSQKRDSHSHAYYAALSSNKPLE 60

Query: 56  SEGESWNHRVVTRGKVNSKVNAVDFDAGSSDEENGN-----------GNGEKEEYDWEKE 104
           S+G++   R +TRGK NS+ NAVDFD   S +E               + E++ YD EKE
Sbjct: 61  SDGDARIRRFLTRGKANSRANAVDFDDAGSSDEESGGDGGGGGDGMETDEEEKAYDLEKE 120

Query: 105 MRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAER 164
            +RR KE+++M ELE+KAEELQ K EE+  +SE K      KRMRV+RELEKVA+EQAER
Sbjct: 121 RKRRAKELQDMMELERKAEELQYKVEEEGEDSEEK------KRMRVKRELEKVAQEQAER 174

Query: 165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHAD 224
           RATA+LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT FGGEIQIWLAMAYEANNRHAD
Sbjct: 175 RATAELMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTLFGGEIQIWLAMAYEANNRHAD 234

Query: 225 CIALYKQLESNHPSKNIRRQAADLRYILQAPKLKISQEEMVTIPLIGSSYDSSMSVHWN 283
           CI LY+QLE  HPS  IRRQA++LRYILQAPKLKISQEEMVTIP+IGSSYD S +V W+
Sbjct: 235 CIDLYQQLEKRHPSPGIRRQASELRYILQAPKLKISQEEMVTIPMIGSSYD-SYAVTWS 292

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357517317|ref|XP_003628947.1| hypothetical protein MTR_8g069450 [Medicago truncatula] gi|355522969|gb|AET03423.1| hypothetical protein MTR_8g069450 [Medicago truncatula]

 Score =  330 bits (845), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 188/278 (67%), Positives = 220/278 (79%), Gaps = 24/278 (8%)

Query: 1   MAVVVGNLALLLDVASPRTLITDRKSRPLALDVLLNLP-KRDLHLNYSALANKSLDSEGE 59
           MAV +GNL +LLD++SPRTL  DRK        LL LP KRD     S+  + S   +GE
Sbjct: 1   MAVSLGNLTILLDISSPRTLTLDRKP-------LLTLPLKRD-----SSSCSCSYGCDGE 48

Query: 60  SWNHRVVTRGKVNSKVNAVDFDAGSSDEENGNGNGEKEEYDWEKEMRRRVKEIEEMRELE 119
                VV RGK NS+ N VDFD+  SDEE G G+G+    D+E ++RRRVKE EE RELE
Sbjct: 49  VRGRVVVARGKSNSEQNGVDFDS-ESDEEGGLGDGD----DFETKIRRRVKEFEERRELE 103

Query: 120 KKAEE-LQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLMFELGQKA 178
           KKAEE LQSK      + + +EE+EEEKRMRV++ELEKVAKEQAERRATAQLM++LG+KA
Sbjct: 104 KKAEEYLQSK-----GDDDGEEESEEEKRMRVKKELEKVAKEQAERRATAQLMYDLGKKA 158

Query: 179 YGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238
           YG+G YGRA+EFLEGALTIIPRPT FGGEIQIWLAMAYEANNRH DCIALYKQLE++HPS
Sbjct: 159 YGRGSYGRAVEFLEGALTIIPRPTLFGGEIQIWLAMAYEANNRHKDCIALYKQLENSHPS 218

Query: 239 KNIRRQAADLRYILQAPKLKISQEEMVTIPLIGSSYDS 276
            +I+RQAA+LRYIL+APKLKI+QEEMVTIPLIGSSYDS
Sbjct: 219 ISIKRQAAELRYILEAPKLKITQEEMVTIPLIGSSYDS 256

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2253092|emb|CAA74590.1| hypothetical protein [Spinacia oleracea]

 Score =  320 bits (821), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 171/288 (59%), Positives = 210/288 (72%), Gaps = 23/288 (7%)

Query: 1   MAVVVGNLALLLDVASPRTLITD--RKSRPLALDVLLNL--PKRDLHLNYSALANKSLDS 56
           MA V+G L L +D+  P  +++D  +K R L  DV+L+L  P+RD               
Sbjct: 1   MATVLGTLVLPVDLTLPAKIVSDHRKKLRLLPYDVVLSLGLPRRD--------------K 46

Query: 57  EGESWNHRV-VTRGKVNSKVNAVDFDAGSSDEENGNGNGEKEE----YDWEKEMRRRVKE 111
           E + W   + + R   + K NAV++ +G  +           +    +DWE EMR+RVKE
Sbjct: 47  EFQLWGENLSLGRLSFSRKSNAVEYSSGDENGNGNGEEEGGGDDEPVFDWETEMRKRVKE 106

Query: 112 IEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLM 171
           IEEMRELEKKAEELQ + +++ S+    +ETEEEK+MRVR+ELEKVAKEQAERRATAQLM
Sbjct: 107 IEEMRELEKKAEELQGRIDDEGSDGSGVDETEEEKKMRVRKELEKVAKEQAERRATAQLM 166

Query: 172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQ 231
           FELGQKAYG+GMY R+IEF E ALTIIPRPT FGGEIQIWLAMAYEAN+RHADCIALYK+
Sbjct: 167 FELGQKAYGRGMYKRSIEFFEAALTIIPRPTLFGGEIQIWLAMAYEANSRHADCIALYKK 226

Query: 232 LESNHPSKNIRRQAADLRYILQAPKLKISQEEMVTIPLIGSSYDSSMS 279
           LE  HPS +IRRQAA+LRYIL+APK+KI+QEEMVTIPLIG+SYDS  S
Sbjct: 227 LEKGHPSVSIRRQAAELRYILEAPKIKITQEEMVTIPLIGNSYDSYAS 274

Source: Spinacia oleracea

Species: Spinacia oleracea

Genus: Spinacia

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563260|ref|XP_003549882.1| PREDICTED: uncharacterized protein LOC100789105 [Glycine max]

 Score =  289 bits (740), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 178/264 (67%), Positives = 200/264 (75%), Gaps = 22/264 (8%)

Query: 16  SPRTLITDRKSRPLALDVLLNLP--KRDLHLNYSALANKSLDSEGESWNHRVVTRGKVNS 73
           SPR++I +RK+RP   DV+L  P  KRD                  S ++ VV RGK NS
Sbjct: 16  SPRSVILERKARPAGSDVVLCAPPSKRDYP---------------SSSSYAVVARGKSNS 60

Query: 74  KVNAVDFDAGSSDEENGNGNGEKEEY-DWEKEMRRRVKEIEEMRELEKKAEELQSKAEED 132
           + N VDFD+   +EE   G G    + DWE EMR+RV+E EE RELEKKAEELQS+    
Sbjct: 61  EKNGVDFDSDEEEEEEEEGGGGGGGFVDWETEMRQRVREFEERRELEKKAEELQSRV--- 117

Query: 133 DSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLE 192
             E   +EETEEEKRMRVR+ELEKVAKEQAERRATAQLMF+LGQKAYGKG YGRAIEFLE
Sbjct: 118 -GEEGEEEETEEEKRMRVRKELEKVAKEQAERRATAQLMFDLGQKAYGKGSYGRAIEFLE 176

Query: 193 GALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYIL 252
            ALTIIP PT FGGEIQIWLAMAYEA+NRH DCIALY+QLE  HPS +IRRQAA+LRYIL
Sbjct: 177 AALTIIPGPTLFGGEIQIWLAMAYEAHNRHKDCIALYRQLEKTHPSVSIRRQAAELRYIL 236

Query: 253 QAPKLKISQEEMVTIPLIGSSYDS 276
           QAPKLKISQEEMVTIPLIGS+YDS
Sbjct: 237 QAPKLKISQEEMVTIPLIGSTYDS 260

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388523007|gb|AFK49565.1| unknown [Medicago truncatula]

 Score =  287 bits (735), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 165/258 (63%), Positives = 195/258 (75%), Gaps = 24/258 (9%)

Query: 1   MAVVVGNLALLLDVASPRTLITDRKSRPLALDVLLNLP-KRDLHLNYSALANKSLDSEGE 59
           MAV +GNL +LLD++SPRTL  DRK        LL LP KRD      +        +GE
Sbjct: 1   MAVSLGNLTILLDISSPRTLTLDRKP-------LLTLPLKRDSSSCSCSYG-----CDGE 48

Query: 60  SWNHRVVTRGKVNSKVNAVDFDAGSSDEENGNGNGEKEEYDWEKEMRRRVKEIEEMRELE 119
                VV RGK NS+ N VDFD+  SDEE G G+G+    D+E ++RRRVKE EE RELE
Sbjct: 49  VRGRVVVARGKSNSEQNGVDFDS-ESDEEGGLGDGD----DFETKIRRRVKEFEERRELE 103

Query: 120 KKAEE-LQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLMFELGQKA 178
           KKAEE LQSK      + + +EE+EEEKRMRV++ELEKVAKEQAERRATAQLM++LG+KA
Sbjct: 104 KKAEEYLQSK-----GDDDGEEESEEEKRMRVKKELEKVAKEQAERRATAQLMYDLGKKA 158

Query: 179 YGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238
           YG+G YGRA+EFLEGALTIIPRPT FGGEIQIWLAMAYEANNRH DCIALYKQLE++HPS
Sbjct: 159 YGRGSYGRAVEFLEGALTIIPRPTLFGGEIQIWLAMAYEANNRHKDCIALYKQLENSHPS 218

Query: 239 KNIRRQAADLRYILQAPK 256
            +I+RQAA+LRYIL + K
Sbjct: 219 ISIKRQAAELRYILGSTK 236

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	287
TAIR|locus:2088812	350	AT3G26580 "AT3G26580" [Arabido	0.435	0.357	0.857	4.1e-77

TAIR|locus:2088812 AT3G26580 "AT3G26580" [Arabidopsis thaliana (taxid:3702)]

 Score = 554 (200.1 bits), Expect = 4.1e-77, Sum P(2) = 4.1e-77
 Identities = 108/126 (85%), Positives = 116/126 (92%)

Query:   158 AKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYE 217
             A+EQAERR TA+LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT FGGEIQIWLAMAYE
Sbjct:   164 AQEQAERRKTAELMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTLFGGEIQIWLAMAYE 223

Query:   218 ANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQAPKLKISQEEMVTIPLIGSSYDSS 277
             ANNRHADCI LY+QLE  HPS  IRRQA++LRYILQAPKLKISQEEMVTIP+IGSSYDS 
Sbjct:   224 ANNRHADCIDLYQQLEKKHPSPGIRRQASELRYILQAPKLKISQEEMVTIPMIGSSYDS- 282

Query:   278 MSVHWN 283
              +V W+
Sbjct:   283 YAVTWS 288

GO:0008150 "biological_process" evidence=ND

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh2_kg.5__414__AT3G26580.1	annotation not avaliable (349 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	scaffold_201615.1	annotation not avaliable (610 aa)							•		0.495
	fgenesh2_kg.5__439__AT3G26740.1	annotation not avaliable (139 aa)				•					0.411

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	287
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.003

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 20/76 (26%), Positives = 42/76 (55%)

Query: 91   NGNGEKEEYDWEKEMRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRV 150
                + EE     E +++ +E ++  E +KKAEE + KA+E    +EAK++ +E K+   
Sbjct: 1461 EAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEE 1520

Query: 151  RRELEKVAKEQAERRA 166
             ++ ++  K +  ++A
Sbjct: 1521 AKKADEAKKAEEAKKA 1536

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 38.6 bits (89), Expect = 0.003
 Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 3/83 (3%)

Query: 96   KEEYDWEKEMRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELE 155
            +E        +++ +E ++  E +KKAEE + KA+E    + AK++ +E K+    ++  
Sbjct: 1374 EEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKA 1433

Query: 156  KVAKEQAERRATAQLMFELGQKA 178
              AK++AE    A    E  +KA
Sbjct: 1434 DEAKKKAEEAKKAD---EAKKKA 1453

Length = 2084

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	287
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.73
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.69
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.67
PF13512	142	TPR_18: Tetratricopeptide repeat	98.46
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.41
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.38
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.36
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.32
PRK10803	263	tol-pal system protein YbgF; Provisional	98.3
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.12
PF13371	73	TPR_9: Tetratricopeptide repeat	98.11
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.02
PRK15359	144	type III secretion system chaperone protein SscB;	98.01
PRK10803	263	tol-pal system protein YbgF; Provisional	97.95
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.95
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.86
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.83
PRK15359	144	type III secretion system chaperone protein SscB;	97.68
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.67
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.66
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.61
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.59
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.56
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.55
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.52
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.51
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.49
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.44
PF12688	120	TPR_5: Tetratrico peptide repeat	97.43
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.43
PRK11788	389	tetratricopeptide repeat protein; Provisional	97.4
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.39
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.39
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.36
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.34
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.27
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	97.23
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.21
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.19
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	97.18
PRK10370	198	formate-dependent nitrite reductase complex subuni	97.16
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	97.08
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.07
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	96.97
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	96.96
PRK11189	296	lipoprotein NlpI; Provisional	96.92
PRK11788	389	tetratricopeptide repeat protein; Provisional	96.82
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.77
PF13428	44	TPR_14: Tetratricopeptide repeat	96.73
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	96.7
PRK10370	198	formate-dependent nitrite reductase complex subuni	96.69
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	96.65
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	96.63
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	96.56
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	96.56
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	96.52
PRK12370	553	invasion protein regulator; Provisional	96.47
PF13512	142	TPR_18: Tetratricopeptide repeat	96.46
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	96.44
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	96.42
PRK15331	165	chaperone protein SicA; Provisional	96.41
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.35
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	96.35
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	96.34
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	96.28
PRK11189	296	lipoprotein NlpI; Provisional	96.24
PRK14574	822	hmsH outer membrane protein; Provisional	96.24
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	96.23
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	96.23
PRK12370	553	invasion protein regulator; Provisional	96.17
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	96.14
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.11
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	96.06
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	96.01
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	95.97
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.95
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	95.92
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	95.89
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	95.81
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	95.79
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	95.72
PRK14574	822	hmsH outer membrane protein; Provisional	95.65
KOG0553	304	consensus TPR repeat-containing protein [General f	95.46
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	95.36
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	95.3
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	95.22
PF12688	120	TPR_5: Tetratrico peptide repeat	95.2
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	95.2
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	95.18
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.06
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	94.9
PF03704	146	BTAD: Bacterial transcriptional activator domain;	94.81
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	94.73
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	94.65
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	94.48
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	94.38
PF13428	44	TPR_14: Tetratricopeptide repeat	94.34
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	94.26
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.25
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	94.22
PF13431	34	TPR_17: Tetratricopeptide repeat	93.94
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	93.83
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	93.71
COG4700	251	Uncharacterized protein conserved in bacteria cont	93.61
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	93.35
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	93.31
KOG2076	895	consensus RNA polymerase III transcription factor	93.31
COG3118	304	Thioredoxin domain-containing protein [Posttransla	93.0
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	92.97
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	92.67
KOG2076	895	consensus RNA polymerase III transcription factor	92.57
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	92.54
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	92.06
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	92.05
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	91.78
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	91.7
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	91.57
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	91.44
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	91.15
COG4783	484	Putative Zn-dependent protease, contains TPR repea	90.76
PF07219	108	HemY_N: HemY protein N-terminus; InterPro: IPR0108	90.62
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	90.5
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	90.1
PF02064	121	MAS20: MAS20 protein import receptor; InterPro: IP	89.47
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	89.44
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	89.2
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	89.01
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	88.97
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	88.91
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	88.88
COG4105	254	ComL DNA uptake lipoprotein [General function pred	88.87
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	88.87
COG4700	251	Uncharacterized protein conserved in bacteria cont	88.03
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	88.02
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	87.9
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	87.49
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	87.44
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	87.26
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	87.15
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	86.91
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	86.8
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	86.74
PRK04841	903	transcriptional regulator MalT; Provisional	86.73
KOG0547	606	consensus Translocase of outer mitochondrial membr	86.68
KOG0547	606	consensus Translocase of outer mitochondrial membr	86.57
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	86.07
COG0457	291	NrfG FOG: TPR repeat [General function prediction	85.93
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	85.5
PRK04841	903	transcriptional regulator MalT; Provisional	85.21
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	85.14
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	85.03
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	85.01
KOG4234	271	consensus TPR repeat-containing protein [General f	84.42
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	83.89
KOG3364	149	consensus Membrane protein involved in organellar	83.87
KOG4234	271	consensus TPR repeat-containing protein [General f	83.69
PF13371	73	TPR_9: Tetratricopeptide repeat	83.28
PRK11619	644	lytic murein transglycosylase; Provisional	82.99
COG0457	291	NrfG FOG: TPR repeat [General function prediction	82.86
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	82.74
PRK15490	578	Vi polysaccharide biosynthesis protein TviE; Provi	82.71
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	82.24
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	81.59
KOG2003	840	consensus TPR repeat-containing protein [General f	81.15
PF09797	365	NatB_MDM20: N-acetyltransferase B complex (NatB) n	80.88
KOG1126	638	consensus DNA-binding cell division cycle control	80.51
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	80.23

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.73  E-value=1.1e-07  Score=82.17  Aligned_cols=81  Identities=23%  Similarity=0.341  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHH
Q 023077          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAA  246 (287)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAK  246 (287)
                      +++..|..|..+|++|+|.+||..|+.+....| +|+...+++++++.||...|+.++|+..|+.++..||+..-..+|-
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P-~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~   82 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYP-NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL   82 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-T-TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence            467899999999999999999999999888655 5788899999999999999999999999999999999998877775


Q ss_pred             HH
Q 023077          247 DL  248 (287)
Q Consensus       247 qL  248 (287)
                      .+
T Consensus        83 Y~   84 (203)
T PF13525_consen   83 YM   84 (203)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.69  E-value=5e-08  Score=68.68  Aligned_cols=57  Identities=28%  Similarity=0.378  Sum_probs=52.1

Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          178 AYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       178 ALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      ++++|+|.+|+++|++++...|.+..    +++.|+.+|...|+.++|..+|+++...+|+
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~   57 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPE----ARLLLAQCYLKQGQYDEAEELLERLLKQDPD   57 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHH----HHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            58899999999999999998777554    9999999999999999999999999999998

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.67  E-value=1.6e-07  Score=66.13  Aligned_cols=64  Identities=25%  Similarity=0.354  Sum_probs=56.6

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       172 yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      |..|...+++|+|.+|++.|+.++...|.    ..+++++|+.+|...|+.++|+.+|+.+++..|+.
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~----~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPD----NPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTT----HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            67899999999999999999999996643    66799999999999999999999999998788863

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.46  E-value=1.2e-06  Score=75.47  Aligned_cols=80  Identities=29%  Similarity=0.311  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD  247 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKq  247 (287)
                      +...|+.|+.+|++|+|..||+.||.+.+..| .++..-++|++|+-||..+|+.++|++.++.+++-||...---.|-.
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP-~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y   88 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYP-FGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY   88 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence            56789999999999999999999999777555 44555699999999999999999999999999999998776666554


Q ss_pred             H
Q 023077          248 L  248 (287)
Q Consensus       248 L  248 (287)
                      +
T Consensus        89 ~   89 (142)
T PF13512_consen   89 M   89 (142)
T ss_pred             H
Confidence            4

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.41  E-value=5e-06  Score=62.04  Aligned_cols=75  Identities=17%  Similarity=0.261  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHH
Q 023077          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQA  245 (287)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQA  245 (287)
                      ..|..|...+..|+|..|+.+|+.++...|.+. .-..+.+.++.+|...|+.++|+.+++.+...+|+.....+|
T Consensus        41 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  115 (119)
T TIGR02795        41 AHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP-KAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA  115 (119)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC-cccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence            344455555555555555555555554443322 112345555555555555555555555555555555554444

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.38  E-value=2.4e-06  Score=76.95  Aligned_cols=83  Identities=18%  Similarity=0.149  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHH
Q 023077          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAA  246 (287)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAK  246 (287)
                      .++..|..|..++.+|+|.+||+.|+.++...| .++...++++||+.||...|+.+.|+..++..++.||+..-..+|-
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP-~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            456689999999999999999999999998666 5588889999999999999999999999999999999998777777


Q ss_pred             HHHH
Q 023077          247 DLRY  250 (287)
Q Consensus       247 qLLy  250 (287)
                      .++-
T Consensus       110 Y~~g  113 (243)
T PRK10866        110 YMRG  113 (243)
T ss_pred             HHHH
Confidence            7654

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.36  E-value=1.1e-06  Score=62.19  Aligned_cols=67  Identities=27%  Similarity=0.420  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCC
Q 023077          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN-RHADCIALYKQLESNHP  237 (287)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~G-q~EkAIALCQ~L~~~HP  237 (287)
                      .+...+..|..++..|+|.+||..|++++...|.+.    .+.+.++.+|...| +.++|+..|++.++-.|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~----~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNA----EAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHH----HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            356788999999999999999999999999776554    49999999999999 79999999999885544

...

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.32  E-value=7.5e-06  Score=61.08  Aligned_cols=70  Identities=20%  Similarity=0.381  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      +..|..|...+.+|+|..|+..|+.++...|. ++....+.++++.+|...|+.+.|+.+|+.+...+|+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~   72 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPK-STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS   72 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC
Confidence            56799999999999999999999999987654 34456899999999999999999999999998778884

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.30  E-value=6.8e-06  Score=75.56  Aligned_cols=82  Identities=18%  Similarity=0.229  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 023077          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADL  248 (287)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqL  248 (287)
                      ...|-.|...|.+|+|..|+..|..++...| .++....+.+.++.+|...|+.++|+.+|+++++.||++...+.|++.
T Consensus       181 ~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP-~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~r  259 (263)
T PRK10803        181 NANYWLGQLNYNKGKKDDAAYYFASVVKNYP-KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKR  259 (263)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence            4567778888888888888888888887665 445556788888888888888888888888888888888888888777


Q ss_pred             HHH
Q 023077          249 RYI  251 (287)
Q Consensus       249 LyI  251 (287)
                      |..
T Consensus       260 L~~  262 (263)
T PRK10803        260 LNA  262 (263)
T ss_pred             Hhc
Confidence            643

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.12  E-value=7.7e-05  Score=60.75  Aligned_cols=85  Identities=15%  Similarity=0.093  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023077          162 AERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI  241 (287)
Q Consensus       162 a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV  241 (287)
                      ..+.+.+...|.....++..|++..+.+.++.++. ..++++....++|.||.+|...|+.++|++.++++....|++.+
T Consensus         5 ~~~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~-~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l   83 (145)
T PF09976_consen    5 QQQAEQASALYEQALQALQAGDPAKAEAAAEQLAK-DYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPEL   83 (145)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHH
Confidence            45566788899999999999999999999999887 45566778899999999999999999999999999988899988


Q ss_pred             HHHHHH
Q 023077          242 RRQAAD  247 (287)
Q Consensus       242 RqQAKq  247 (287)
                      +..|+-
T Consensus        84 ~~~a~l   89 (145)
T PF09976_consen   84 KPLARL   89 (145)
T ss_pred             HHHHHH
Confidence            877764

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.11  E-value=2.9e-05  Score=55.31  Aligned_cols=70  Identities=19%  Similarity=0.122  Sum_probs=62.8

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 023077          176 QKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLR  249 (287)
Q Consensus       176 ~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLL  249 (287)
                      ..++.+++|..|++.++.++...|.+..    +.+.++.+|...|+.++|+..|++..+.+|+.....+++.+|
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l   72 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPE----LWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML   72 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccch----hhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence            4678999999999999999997776444    889999999999999999999999999999999888887765

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.02  E-value=5.1e-05  Score=64.69  Aligned_cols=73  Identities=26%  Similarity=0.350  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI  241 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV  241 (287)
                      +...|..|...+..|+|..|+..|+.++...| .++...++.+.++.+|...|+.++|+.+|+.++..+|+...
T Consensus        33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~  105 (235)
T TIGR03302        33 AEELYEEAKEALDSGDYTEAIKYFEALESRYP-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD  105 (235)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence            45679999999999999999999999988665 44556679999999999999999999999999988996554

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.01  E-value=7.1e-05  Score=61.77  Aligned_cols=81  Identities=15%  Similarity=0.041  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH----HHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK----NIRR  243 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~----qVRq  243 (287)
                      ....+..|......|+|.+|+..|..++...|.+.    .+.+.++.+|...|+.++||..|+..+...|+-    .++.
T Consensus        58 ~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~----~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~  133 (144)
T PRK15359         58 WRAHIALAGTWMMLKEYTTAINFYGHALMLDASHP----EPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQ  133 (144)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            44567788889999999999999999998665544    489999999999999999999999988777775    7788


Q ss_pred             HHHHHHHHh
Q 023077          244 QAADLRYIL  252 (287)
Q Consensus       244 QAKqLLyIL  252 (287)
                      +++.+|.-|
T Consensus       134 ~~~~~l~~~  142 (144)
T PRK15359        134 NAQIMVDTL  142 (144)
T ss_pred             HHHHHHHHH
Confidence            888877655

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.95  E-value=7.2e-05  Score=68.88  Aligned_cols=78  Identities=13%  Similarity=0.154  Sum_probs=67.4

Q ss_pred             HHHHHHHHHH-HhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHH
Q 023077          169 QLMFELGQKA-YGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD  247 (287)
Q Consensus       169 e~~yeaG~aA-LerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKq  247 (287)
                      ...|+.+... +.+|+|.+||..|+.++...|. +..-..+++||+.+|...|+.++|+..|+.+++.||+....-.|-.
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~-s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD-STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            6789999986 7789999999999999997765 4455689999999999999999999999999999999766655543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.95  E-value=0.00017  Score=56.13  Aligned_cols=70  Identities=11%  Similarity=-0.038  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI  241 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV  241 (287)
                      ....+..|...+..|+|.+|+..|+.++...|.+    ..+.+.++.+|...|+.++|+..++...+.+|+...
T Consensus        51 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        51 SRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD----PRPYFHAAECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence            3456778899999999999999999988865443    358899999999999999999999999988888776

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.86  E-value=9.6e-05  Score=49.11  Aligned_cols=66  Identities=26%  Similarity=0.401  Sum_probs=51.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (287)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (287)
                      .+..|...+.+|+|..|+.+|+.++...+.+.    .+.+.++.+|...|+.++|+.+|+.....+|...
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~   68 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNA----DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA   68 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence            46678888888889999988888887655443    6788888888888888889988888875565543

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.83  E-value=0.00015  Score=61.79  Aligned_cols=67  Identities=21%  Similarity=0.112  Sum_probs=59.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      .+..|...+.+|+|.+|+..|+.++...|. ++...++++.++.+|...|+.++|+.+++.|..+||+
T Consensus       169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~  235 (235)
T TIGR03302       169 ELYVARFYLKRGAYVAAINRFETVVENYPD-TPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD  235 (235)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHCCC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            457788899999999999999999987664 4666789999999999999999999999999988874

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=97.68  E-value=0.00016  Score=59.61  Aligned_cols=64  Identities=19%  Similarity=0.205  Sum_probs=57.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      .+..|..++.+|+|.+|+..|..++...|.+.    ++.+.|+.++...|+.++|+..|+....-.|+
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~   90 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSW----RAHIALAGTWMMLKEYTTAINFYGHALMLDAS   90 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            66779999999999999999999998666554    59999999999999999999999999976664

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.67  E-value=0.00029  Score=61.11  Aligned_cols=84  Identities=19%  Similarity=0.220  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHhC
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR-----------HADCIALYKQLESNH  236 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq-----------~EkAIALCQ~L~~~H  236 (287)
                      .+..|..|.+.|..|+|..|+..++..+...|.+. .-..|.++++.+|....+           ..+|+..|+.|+.++
T Consensus        42 ~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~-~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y  120 (203)
T PF13525_consen   42 PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP-KADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY  120 (203)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T-THHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc-chhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC
Confidence            34578889999999999999999999999887655 457899999999876543           459999999999999


Q ss_pred             CCHHHHHHHHHHHHHh
Q 023077          237 PSKNIRRQAADLRYIL  252 (287)
Q Consensus       237 Pd~qVRqQAKqLLyIL  252 (287)
                      |++.-...|+..+..|
T Consensus       121 P~S~y~~~A~~~l~~l  136 (203)
T PF13525_consen  121 PNSEYAEEAKKRLAEL  136 (203)
T ss_dssp             TTSTTHHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHHHH
Confidence            9999999999887665

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.66  E-value=0.00036  Score=65.92  Aligned_cols=82  Identities=13%  Similarity=0.084  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIRRQAA  246 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd-~qVRqQAK  246 (287)
                      +...+..|...+..|+|..|+..|+.++...|.+    ..+++.|+.+|...|+.++|+..|+.....+|+ +.+..|-.
T Consensus        36 ~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~----~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~  111 (356)
T PLN03088         36 AELYADRAQANIKLGNFTEAVADANKAIELDPSL----AKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIK  111 (356)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            5577888999999999999999999999976644    458999999999999999999999998877775 88888888


Q ss_pred             HHHHHhc
Q 023077          247 DLRYILQ  253 (287)
Q Consensus       247 qLLyILE  253 (287)
                      .+..-|.
T Consensus       112 ~~~~kl~  118 (356)
T PLN03088        112 ECDEKIA  118 (356)
T ss_pred             HHHHHHH
Confidence            8877773

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.61  E-value=0.00028  Score=51.13  Aligned_cols=67  Identities=19%  Similarity=0.159  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTII---PRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~---~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      ++......|...+.+|+|.+|+.+|+++++..   +...+.-+.+..-|+.+|...|+.++|+.++++-.
T Consensus         4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            46677889999999999999999999999763   22333347788999999999999999999999865

...

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.59  E-value=0.00034  Score=54.48  Aligned_cols=73  Identities=15%  Similarity=0.216  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIRRQ  244 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd-~qVRqQ  244 (287)
                      ....+..|..++..|+|..|+++|+.++...|.+.    .+.+.++.+|...|+.++|+.+|++.+..+|+ +.+.-.
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~   90 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNS----RYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH   90 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence            45578899999999999999999999998766543    59999999999999999999999999867775 344433

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.56  E-value=0.00017  Score=53.49  Aligned_cols=51  Identities=25%  Similarity=0.396  Sum_probs=36.1

Q ss_pred             hcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 023077          180 GKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQL  232 (287)
Q Consensus       180 erGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L  232 (287)
                      ++|+|..||.+++++++..|.++  -..+.++||.+|...|+.++||.+|+++
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~--~~~~~~~la~~~~~~~~y~~A~~~~~~~   51 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNP--NSAYLYNLAQCYFQQGKYEEAIELLQKL   51 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTH--HHHHHHHHHHHHHHTTHHHHHHHHHHCH
T ss_pred             CCccHHHHHHHHHHHHHHCCCCh--hHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            46788888888888887666532  2346666788888888888888888764

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.55  E-value=0.00056  Score=45.39  Aligned_cols=65  Identities=23%  Similarity=0.343  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023077          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (287)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (287)
                      ...+..|...+..|+|..|+.+|+.++...+...    .+...++.+|...|+.++|+.+++.+...+|
T Consensus        35 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          35 DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA----KAYYNLGLAYYKLGKYEEALEAYEKALELDP   99 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch----hHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence            3467778888889999999999999998766554    6889999999999999999999999885555

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.52  E-value=0.0011  Score=59.93  Aligned_cols=82  Identities=11%  Similarity=0.062  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCC------------------hHHHHHHHHH
Q 023077          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR------------------HADCIALYKQ  231 (287)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq------------------~EkAIALCQ~  231 (287)
                      ..|..|...|..|+|..|+..++.++...|.+.. -..|.+.+++++...|+                  ..+|+..++.
T Consensus        71 a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~-~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~  149 (243)
T PRK10866         71 VQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSK  149 (243)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc-hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHH
Confidence            4688999999999999999999999998876644 47899999998766652                  3689999999


Q ss_pred             HHHhCCCHHHHHHHHHHHHHh
Q 023077          232 LESNHPSKNIRRQAADLRYIL  252 (287)
Q Consensus       232 L~~~HPd~qVRqQAKqLLyIL  252 (287)
                      |+++||+++-...|+..|..|
T Consensus       150 li~~yP~S~ya~~A~~rl~~l  170 (243)
T PRK10866        150 LVRGYPNSQYTTDATKRLVFL  170 (243)
T ss_pred             HHHHCcCChhHHHHHHHHHHH
Confidence            999999999999999866554

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.51  E-value=0.00014  Score=44.78  Aligned_cols=33  Identities=18%  Similarity=0.259  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          207 EIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       207 EAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      +++++++.+|...|+.++|+.+++.++++||++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            578999999999999999999999999999974

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.49  E-value=0.00079  Score=63.12  Aligned_cols=80  Identities=24%  Similarity=0.251  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD  247 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKq  247 (287)
                      +...|+.|++.|+.|+|.+||..||.+...+| .++..-++|+-|+.||...|+.+.|+......+..||...=...|-.
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p-~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHP-FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence            67799999999999999999999999876555 56666899999999999999999999999998888888766566555


Q ss_pred             H
Q 023077          248 L  248 (287)
Q Consensus       248 L  248 (287)
                      |
T Consensus       113 l  113 (254)
T COG4105         113 L  113 (254)
T ss_pred             H
Confidence            4

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.44  E-value=0.0023  Score=60.50  Aligned_cols=66  Identities=15%  Similarity=0.146  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      ..++..|..||..|+|..||++|..++...|.+.    .+.+.++.+|...|+.++|+..|+.++...|+
T Consensus         3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~----~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~   68 (356)
T PLN03088          3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNA----ELYADRAQANIKLGNFTEAVADANKAIELDPS   68 (356)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            3467789999999999999999999999777653    58899999999999999999999999877775

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.43  E-value=0.0012  Score=54.84  Aligned_cols=78  Identities=18%  Similarity=0.149  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 023077          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADL  248 (287)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqL  248 (287)
                      ..|+.|-.--..|+..+||.+++.++.. .......-++.|.|+.+|...|+.++|+++.++....||+.+.....+-+
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f   80 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF   80 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence            4688888888899999999999999884 44455556899999999999999999999999999888987776666644

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.43  E-value=0.0012  Score=52.65  Aligned_cols=61  Identities=13%  Similarity=0.090  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      ...+..|...+.+|+|..|++++++++...+.+.    .+.+.++.+|...|+.++|+.+|+...
T Consensus        66 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~~~g~~~~A~~~~~~~~  126 (234)
T TIGR02521        66 LAYLALALYYQQLGELEKAEDSFRRALTLNPNNG----DVLNNYGTFLCQQGKYEQAMQQFEQAI  126 (234)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            3445556666666777777777766666544322    366666666667777777777776666

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=97.40  E-value=0.00068  Score=61.24  Aligned_cols=66  Identities=15%  Similarity=0.187  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      +...|..|..++..|+|..|+..|+.++...|.+    ..+++.|+..|...|+.++|+.+++.+. .+|+
T Consensus        35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l-~~~~  100 (389)
T PRK11788         35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPET----VELHLALGNLFRRRGEVDRAIRIHQNLL-SRPD  100 (389)
T ss_pred             ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHcCcHHHHHHHHHHHh-cCCC
Confidence            4456666777777777777777777777654433    2466667777777777777777777776 4543

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.39  E-value=0.0034  Score=50.50  Aligned_cols=73  Identities=23%  Similarity=0.329  Sum_probs=55.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH-------hCCCHHHHHHH
Q 023077          173 ELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES-------NHPSKNIRRQA  245 (287)
Q Consensus       173 eaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~-------~HPd~qVRqQA  245 (287)
                      ..+...+..|+|..|+.++..++...|.+-.    +...|..+|.+.|+...|+..|+++..       ..|.+.++.-.
T Consensus        67 ~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~----~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~  142 (146)
T PF03704_consen   67 RLAEALLEAGDYEEALRLLQRALALDPYDEE----AYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALY  142 (146)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHHSTT-HH----HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHH
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHH
Confidence            4456788999999999999999998777655    999999999999999999999988752       24777777776


Q ss_pred             HHHH
Q 023077          246 ADLR  249 (287)
Q Consensus       246 KqLL  249 (287)
                      +.+|
T Consensus       143 ~~il  146 (146)
T PF03704_consen  143 REIL  146 (146)
T ss_dssp             HHHH
T ss_pred             HHhC
Confidence            6654

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.39  E-value=0.0027  Score=51.69  Aligned_cols=66  Identities=23%  Similarity=0.240  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      .....|..|..++.+|+|..|++.|+.++... ++..+...+.+.||..|...|+.++|+++++.+.
T Consensus        47 a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~  112 (145)
T PF09976_consen   47 AALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQYDEALATLQQIP  112 (145)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Confidence            35567889999999999999999999999865 4556667899999999999999999999997754

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.36  E-value=0.00099  Score=62.63  Aligned_cols=74  Identities=15%  Similarity=0.192  Sum_probs=34.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 023077          175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLR  249 (287)
Q Consensus       175 G~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLL  249 (287)
                      |+.-|.+|+|..|...|..++...|. ++--.++.+=|+++....|++++|-+.++++++++|+..-.+.|+..+
T Consensus       185 Ge~~y~qg~y~~Aa~~f~~~~k~~P~-s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~  258 (262)
T COG1729         185 GESLYAQGDYEDAAYIFARVVKDYPK-SPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVAL  258 (262)
T ss_pred             HHHHHhcccchHHHHHHHHHHHhCCC-CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            44444444444444444443332221 111234444444444555555555555555555555555555555443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.34  E-value=0.0018  Score=53.63  Aligned_cols=87  Identities=18%  Similarity=0.232  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHH
Q 023077          150 VRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALY  229 (287)
Q Consensus       150 v~~~L~~~a~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALC  229 (287)
                      ++..|.+..+ +..+...+...+..|...+.+|+|..|+.+|..++...+.+ ..-..+..-|+.+|...|+.++|+.+|
T Consensus        18 ~~~~l~~~~~-~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-~~~~~~~~~lg~~~~~~g~~~eA~~~~   95 (168)
T CHL00033         18 VADILLRILP-TTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP-YDRSYILYNIGLIHTSNGEHTKALEYY   95 (168)
T ss_pred             chhhhhHhcc-CCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3444544432 34444567888999999999999999999999999875432 222458899999999999999999999


Q ss_pred             HHHHHhCCC
Q 023077          230 KQLESNHPS  238 (287)
Q Consensus       230 Q~L~~~HPd  238 (287)
                      ++....+|.
T Consensus        96 ~~Al~~~~~  104 (168)
T CHL00033         96 FQALERNPF  104 (168)
T ss_pred             HHHHHhCcC
Confidence            998855554

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.27  E-value=0.0027  Score=52.99  Aligned_cols=74  Identities=24%  Similarity=0.352  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      ...+...|..|...+..|+|.+|+.+|+.++...+... .-..+...|+.+|...|+.++|+.+|++.+..+|+.
T Consensus        32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  105 (172)
T PRK02603         32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN-DRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ  105 (172)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            44566789999999999999999999999998654322 235689999999999999999999999999777764

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=97.23  E-value=0.0015  Score=62.39  Aligned_cols=68  Identities=24%  Similarity=0.166  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      ....+..|..++.+|+|.+|+..|..++...|.    ..++++.|+.+|...|+.++|+..++++...+|+.
T Consensus        22 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~   89 (899)
T TIGR02917        22 PESLIEAAKSYLQKNKYKAAIIQLKNALQKDPN----DAEARFLLGKIYLALGDYAAAEKELRKALSLGYPK   89 (899)
T ss_pred             HHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCh
Confidence            345788888999999999999999998875444    33688999999999999999999999988666654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.21  E-value=0.0025  Score=59.98  Aligned_cols=71  Identities=15%  Similarity=0.325  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (287)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (287)
                      +..|+.+..+|..|+|..|.+.|-..+...|.++ .-..+++||-.+|.+.|+.+.|..+|-...+.||...
T Consensus       142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~-~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~  212 (262)
T COG1729         142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNST-YTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSP  212 (262)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc-ccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCC
Confidence            4499999999999999999999999999777554 3478999999999999999999999999999999764

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.19  E-value=0.0019  Score=56.64  Aligned_cols=75  Identities=19%  Similarity=0.109  Sum_probs=42.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC----CCHHHHHHHHHHHH
Q 023077          175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNH----PSKNIRRQAADLRY  250 (287)
Q Consensus       175 G~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~H----Pd~qVRqQAKqLLy  250 (287)
                      |..-=.+|+|.+||..+..+..+.+ +.+   ++...++.||-+.|+.+.|++.++.-+..+    -+.+++++|+.+|.
T Consensus        76 G~~~Q~~g~~~~AI~aY~~A~~L~~-ddp---~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~  151 (157)
T PRK15363         76 GECCQAQKHWGEAIYAYGRAAQIKI-DAP---QAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQ  151 (157)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhcCC-CCc---hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH
Confidence            3333344455555555555444332 222   355566666666666666666666555455    56677777777777


Q ss_pred             Hhc
Q 023077          251 ILQ  253 (287)
Q Consensus       251 ILE  253 (287)
                      .|.
T Consensus       152 ~l~  154 (157)
T PRK15363        152 QLS  154 (157)
T ss_pred             Hhh
Confidence            664

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.18  E-value=0.0022  Score=60.18  Aligned_cols=72  Identities=22%  Similarity=0.209  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          164 RRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       164 ~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      +.+.++..++.|..-|++|+|.+|-..||+|++..|.+..    ++..+|..|+..|+.+.|-.-|++-.+-+|+.
T Consensus        31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~----a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~  102 (250)
T COG3063          31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYL----AHLVRAHYYQKLGENDLADESYRKALSLAPNN  102 (250)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH----HHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc
Confidence            3455677899999999999999999999999997666665    99999999999999999999999987677753

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=97.16  E-value=0.013  Score=51.31  Aligned_cols=69  Identities=19%  Similarity=0.205  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077          168 AQLMFELGQKA-YGKGM--YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (287)
Q Consensus       168 ae~~yeaG~aA-LerGd--Y~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (287)
                      ....+..|... +..|+  |.+|+++|++++...|.+..    +++.|+++|...|+.++|++.|+++.+..|...
T Consensus       107 ~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~----al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~  178 (198)
T PRK10370        107 AELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVT----ALMLLASDAFMQADYAQAIELWQKVLDLNSPRV  178 (198)
T ss_pred             HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChh----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            44556666654 56677  69999999999997777665    999999999999999999999999875555533

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=97.08  E-value=0.0041  Score=61.70  Aligned_cols=69  Identities=19%  Similarity=0.134  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      .+.+....+.|..+|.+|+|..||..|++++...|.  +   .....++.||...|+.++||..|...+...|+
T Consensus       124 ~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~--~---~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~  192 (615)
T TIGR00990       124 KKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD--P---VYYSNRAACHNALGDWEKVVEDTTAALELDPD  192 (615)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--h---HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC
Confidence            345666778888889999999999999988886663  2   36777888888888888888888888865565

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.07  E-value=0.0097  Score=47.43  Aligned_cols=67  Identities=22%  Similarity=0.239  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      ...+..|...+..|+|..|+.+|+.++...|.+    ..+.+.++.+|...|+.++|+.++++.....|+.
T Consensus       136 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  202 (234)
T TIGR02521       136 RSLENAGLCALKAGDFDKAEKYLTRALQIDPQR----PESLLELAELYYLRGQYKDARAYLERYQQTYNQT  202 (234)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            345667888899999999999999988866543    3578889999999999999999999887554543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=96.97  E-value=0.0063  Score=53.44  Aligned_cols=80  Identities=9%  Similarity=0.026  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CHHHHHH
Q 023077          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP-SKNIRRQ  244 (287)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP-d~qVRqQ  244 (287)
                      ++.+..|.-|-..+++|+|..|+.+|+-+|...|.+..    -.|.|+.+|+..|+.++||..|..-..-.| +|..-..
T Consensus        33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~----y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~  108 (157)
T PRK15363         33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFD----YWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWA  108 (157)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH----HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence            45667999999999999999999999999998887777    899999999999999999999998764444 3455555


Q ss_pred             HHHHH
Q 023077          245 AADLR  249 (287)
Q Consensus       245 AKqLL  249 (287)
                      +-..+
T Consensus       109 ag~c~  113 (157)
T PRK15363        109 AAECY  113 (157)
T ss_pred             HHHHH
Confidence            54443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=96.96  E-value=0.0021  Score=47.72  Aligned_cols=58  Identities=24%  Similarity=0.394  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 023077          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQ  231 (287)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~  231 (287)
                      .-.|..|...|..|+|.+||.+|.. ....+.+    ..+++.++.||...|+.++||..+++
T Consensus        26 ~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~----~~~~~l~a~~~~~l~~y~eAi~~l~~   83 (84)
T PF12895_consen   26 AYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN----PDIHYLLARCLLKLGKYEEAIKALEK   83 (84)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH----HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC----HHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            3567789999999999999999998 4433322    46888999999999999999999875

>PRK11189 lipoprotein NlpI; Provisional

Probab=96.92  E-value=0.0053  Score=56.08  Aligned_cols=69  Identities=16%  Similarity=0.084  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (287)
                      +...+..|...+..|+|..|++.|+.+++..|.+.    .+.+.++.+|...|+.++|+..|+.....+|+.-
T Consensus        98 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~----~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~  166 (296)
T PRK11189         98 ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN----YAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP  166 (296)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            45678889999999999999999999999766654    4899999999999999999999999998888754

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=96.82  E-value=0.0091  Score=54.04  Aligned_cols=70  Identities=24%  Similarity=0.296  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023077          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI  241 (287)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV  241 (287)
                      ...+..|...+.+|+|.+|+++|+.++...|.+.   ..+...|+.+|...|+.++|+.+++.+...+|+..+
T Consensus       215 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~  284 (389)
T PRK11788        215 RASILLGDLALAQGDYAAAIEALERVEEQDPEYL---SEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL  284 (389)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH
Confidence            3455667777777777777777777776544322   245566777777777777777777776656666544

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.77  E-value=0.0098  Score=59.84  Aligned_cols=66  Identities=18%  Similarity=0.150  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES  234 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~  234 (287)
                      +...++.|.+.+..|+|..||+.|+.++++.|.+.. ...+++.|+.+|...|+.++|++.+++-+.
T Consensus        75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~ae-A~~A~yNLAcaya~LGr~dEAla~LrrALe  140 (453)
T PLN03098         75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDE-AQAAYYNKACCHAYREEGKKAADCLRTALR  140 (453)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            445788899999999999999999999997665432 124699999999999999999999999983

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.73  E-value=0.0034  Score=42.35  Aligned_cols=34  Identities=18%  Similarity=0.180  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077          207 EIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (287)
Q Consensus       207 EAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (287)
                      .+++.|+.+|...|+.++|+.+|+++++.+|+.-
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~   35 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDP   35 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            4789999999999999999999999999999864

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=96.70  E-value=0.0046  Score=43.85  Aligned_cols=43  Identities=21%  Similarity=0.171  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 023077          209 QIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYIL  252 (287)
Q Consensus       209 QmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyIL  252 (287)
                      ++-||.||...|+.+.|..+-+.+. .++++..+..|+.||.-|
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl-~~~~~~q~~eA~~LL~~l   44 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVI-EEGDEAQRQEARALLAQL   44 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHH-HcCCHHHHHHHHHHHhcC
Confidence            5679999999999999999999999 899999999999998653

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=96.69  E-value=0.027  Score=49.25  Aligned_cols=68  Identities=15%  Similarity=0.119  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHH-HHHcCC--hHHHHHHHHHHHHhCCCH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMA-YEANNR--HADCIALYKQLESNHPSK  239 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtA-Yqa~Gq--~EkAIALCQ~L~~~HPd~  239 (287)
                      .+.-+..|...+..|+|.+|+..|++++...|.+.    .+...++++ |...|+  .++|+.++++....+|+.
T Consensus        73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~----~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~  143 (198)
T PRK10370         73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENA----ELYAALATVLYYQAGQHMTPQTREMIDKALALDANE  143 (198)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC
Confidence            55678889999999999999999999999777654    489999998 578888  599999999999888864

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=96.65  E-value=0.011  Score=61.67  Aligned_cols=76  Identities=11%  Similarity=-0.064  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD  247 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKq  247 (287)
                      +...+..|...-+.|+|.+|++.|++++...| ...   +++++++.+++..|+.++|.+.|++.+ ..-.+-+++.+..
T Consensus       154 ~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~---~~~~~~a~~l~~~G~~~~A~~~~~~a~-~~~~~~~~~~~~~  228 (694)
T PRK15179        154 AREILLEAKSWDEIGQSEQADACFERLSRQHP-EFE---NGYVGWAQSLTRRGALWRARDVLQAGL-DAIGDGARKLTRR  228 (694)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCC-CcH---HHHHHHHHHHHHcCCHHHHHHHHHHHH-HhhCcchHHHHHH
Confidence            77889999999999999999999999998222 333   699999999999999999999999999 4556666776666


Q ss_pred             H
Q 023077          248 L  248 (287)
Q Consensus       248 L  248 (287)
                      +
T Consensus       229 ~  229 (694)
T PRK15179        229 L  229 (694)
T ss_pred             H
Confidence            5

>TIGR00540 hemY_coli hemY protein

Probab=96.63  E-value=0.022  Score=54.12  Aligned_cols=70  Identities=17%  Similarity=0.064  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (287)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (287)
                      .+...+..|..++..|+|..|.+.+.++....|.+    .-..+..|.++...|+.+.|..+++...+.+|++.
T Consensus        83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~----~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~  152 (409)
T TIGR00540        83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEP----VLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDN  152 (409)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc
Confidence            34455666666666666666666666655533221    23455556666666666666666666555556553

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=96.56  E-value=0.017  Score=58.84  Aligned_cols=66  Identities=15%  Similarity=0.154  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      ..+..|...+.+|+|.+|+..|+.++...|.+.    .+...|+.+|...|+.++|++.|+.+...+|+.
T Consensus       286 a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~----~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~  351 (656)
T PRK15174        286 IVTLYADALIRTGQNEKAIPLLQQSLATHPDLP----YVRAMYARALRQVGQYTAASDEFVQLAREKGVT  351 (656)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            445557777777777777777777776544332    366667777777777777777777766666654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=96.56  E-value=0.0098  Score=59.04  Aligned_cols=68  Identities=16%  Similarity=0.238  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      ....+..|...+..|+|..|+..|++++...|.+.    .+.+.|+.+|...|+.++|+.+|+.....+|+.
T Consensus       399 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~----~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~  466 (615)
T TIGR00990       399 PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI----FSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA  466 (615)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            45667778888888999999999998888665443    477888888889999999999988887677763

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=96.52  E-value=0.014  Score=62.99  Aligned_cols=72  Identities=18%  Similarity=0.146  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077          165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (287)
Q Consensus       165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (287)
                      ..+..-.|..|.....+|+|..|+..|+.|++..|.+    ..+++.|+.+|...|+.++|+..|++..+.+|+..
T Consensus        41 ~~~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n----~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~  112 (987)
T PRK09782         41 HFVIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDN----IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDA  112 (987)
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccH
Confidence            4556678899999999999999999999999977777    35889999999999999999999999997777543

>PRK12370 invasion protein regulator; Provisional

Probab=96.47  E-value=0.013  Score=58.21  Aligned_cols=66  Identities=11%  Similarity=0.050  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      ..+..|...+.+|+|.+|+..|+.++...|.+..    +.+.|+.+|...|+.++|+..|++....+|+.
T Consensus       340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~----a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~  405 (553)
T PRK12370        340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPISAD----IKYYYGWNLFMAGQLEEALQTINECLKLDPTR  405 (553)
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence            3445677778899999999999999987655443    78899999999999999999999988777874

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.46  E-value=0.061  Score=46.65  Aligned_cols=79  Identities=16%  Similarity=0.233  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCC---------------hHHHHHHHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR---------------HADCIALYKQL  232 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq---------------~EkAIALCQ~L  232 (287)
                      .+..|..|-+-|.+|+|..|+..++..+.++|.+-.. .-|.+...++|.....               ..+|...++.|
T Consensus        47 ~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~l  125 (142)
T PF13512_consen   47 EQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQL  125 (142)
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHH
Confidence            4677899999999999999999999999988866543 4588888999999887               89999999999


Q ss_pred             HHhCCCHHHHHHHHH
Q 023077          233 ESNHPSKNIRRQAAD  247 (287)
Q Consensus       233 ~~~HPd~qVRqQAKq  247 (287)
                      +.+||+++-...|+.
T Consensus       126 v~~yP~S~ya~dA~~  140 (142)
T PF13512_consen  126 VRRYPNSEYAADARK  140 (142)
T ss_pred             HHHCcCChhHHHHHh
Confidence            999999999888874

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=96.44  E-value=0.029  Score=50.31  Aligned_cols=69  Identities=14%  Similarity=0.174  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023077          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (287)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (287)
                      ...+..|...+++|+|.+|+++|++++...+.........++.++..|...|+.++|+.+|+++....|
T Consensus       149 ~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         149 WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            345667888999999999999999999877765555556777899999999999999999999763444

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=96.42  E-value=0.021  Score=58.96  Aligned_cols=89  Identities=16%  Similarity=0.116  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD  247 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKq  247 (287)
                      ....+..|.....+|+|.+|++.|++++...|.+..    +.+.+++++.+.|+.++|.++++.++..+|+...-+.-++
T Consensus       393 ~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~----l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~  468 (765)
T PRK10049        393 QGLRIDYASVLQARGWPRAAENELKKAEVLEPRNIN----LEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLAR  468 (765)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH----HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            345677788888999999999999999987765554    8889999999999999999999999999999888888888


Q ss_pred             HHHHhcCCCCCCC
Q 023077          248 LRYILQAPKLKIS  260 (287)
Q Consensus       248 LLyILEAPkLkrp  260 (287)
                      .+.+=.-|+|.+-
T Consensus       469 ~~~~~~~~~l~~~  481 (765)
T PRK10049        469 ARDVHHMAELRIA  481 (765)
T ss_pred             HHHhccCceEEEE
Confidence            8887777777544

>PRK15331 chaperone protein SicA; Provisional

Probab=96.41  E-value=0.024  Score=50.28  Aligned_cols=89  Identities=10%  Similarity=0.063  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCc--hH----------------------------HHHHHHHHH
Q 023077          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF--GG----------------------------EIQIWLAMA  215 (287)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~l--GG----------------------------EAQmwLAtA  215 (287)
                      ++.+..|..|-..|.+|+|..|..+|.-.|-..+.+.+.  |.                            ..-+.++.+
T Consensus        35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC  114 (165)
T PRK15331         35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQC  114 (165)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHH
Confidence            345567777777888888888877777777655555442  00                            123344555


Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Q 023077          216 YEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQA  254 (287)
Q Consensus       216 Yqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILEA  254 (287)
                      |-..|+.++|+..++..+.+.-+..++++|+.+|..|..
T Consensus       115 ~l~l~~~~~A~~~f~~a~~~~~~~~l~~~A~~~L~~l~~  153 (165)
T PRK15331        115 QLLMRKAAKARQCFELVNERTEDESLRAKALVYLEALKT  153 (165)
T ss_pred             HHHhCCHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHc
Confidence            555566666666666666667788999999999998864

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.35  E-value=0.026  Score=58.76  Aligned_cols=69  Identities=25%  Similarity=0.329  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-----CCCC-chH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023077          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP-----RPTF-FGG-----EIQIWLAMAYEANNRHADCIALYKQLESN  235 (287)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~-----~~S~-lGG-----EAQmwLAtAYqa~Gq~EkAIALCQ~L~~~  235 (287)
                      +++..|+.+-.-++.|+|.+||++|+++..++.     ..+. .+.     -++.+||.+|+-.|++++|.++|..++++
T Consensus       174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~  253 (652)
T KOG2376|consen  174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR  253 (652)
T ss_pred             hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence            588999999999999999999999999933222     2222 233     36788999999999999999999999843

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=96.35  E-value=0.039  Score=59.42  Aligned_cols=67  Identities=16%  Similarity=0.255  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (287)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (287)
                      .....|..++.+|+|.+|++.|+.++...|.+.    .+.+.|+.+|...|+.++|+++|+++...+|+.-
T Consensus       463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~----~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~  529 (1157)
T PRK11447        463 RLAQQAEALENQGKWAQAAELQRQRLALDPGSV----WLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDP  529 (1157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence            345678888999999999999999999766543    4899999999999999999999999987788643

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=96.34  E-value=0.026  Score=53.63  Aligned_cols=61  Identities=23%  Similarity=0.218  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      +...+..|..++.+|+|++|.++||++++..|.+     ...++|+.+|.+.|++++|..+|++=.
T Consensus       328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-----~~~~~La~~~~~~g~~~~A~~~~~~~l  388 (398)
T PRK10747        328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-----YDYAWLADALDRLHKPEEAAAMRRDGL  388 (398)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4567788999999999999999999999854332     356789999999999999999998654

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=96.28  E-value=0.018  Score=58.76  Aligned_cols=69  Identities=10%  Similarity=0.104  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023077          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI  241 (287)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV  241 (287)
                      ...+..|..++.+|+|.+|+..|+.++...|.+.    .+.+.++.+|...|+.++|++.|+.+...+|++..
T Consensus       111 ~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~----~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~  179 (656)
T PRK15174        111 EDVLLVASVLLKSKQYATVADLAEQAWLAFSGNS----QIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD  179 (656)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH
Confidence            3456668888888999999999999888655443    47888888888899988898888888667776543

>PRK11189 lipoprotein NlpI; Provisional

Probab=96.24  E-value=0.026  Score=51.58  Aligned_cols=69  Identities=19%  Similarity=0.216  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (287)
                      +...|..|......|++..|+..|.++++..|.+    ..+.+.++.+|...|+.++|+..|++..+..|+..
T Consensus        64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~  132 (296)
T PRK11189         64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDM----ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN  132 (296)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            4558889999999999999999999999976654    35999999999999999999999999987778754

>PRK14574 hmsH outer membrane protein; Provisional

Probab=96.24  E-value=0.024  Score=60.32  Aligned_cols=31  Identities=23%  Similarity=0.290  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          208 IQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       208 AQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      +...+|.+|...|+.++||.+|+++....|+
T Consensus       104 ~llalA~ly~~~gdyd~Aiely~kaL~~dP~  134 (822)
T PRK14574        104 GLASAARAYRNEKRWDQALALWQSSLKKDPT  134 (822)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            3334455666666666666666666655555

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=96.23  E-value=0.033  Score=59.97  Aligned_cols=66  Identities=15%  Similarity=0.108  Sum_probs=57.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (287)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (287)
                      .+..|..++.+|+|.+|++.|++++...|.+.    .+.+.|+.+|...|+.++|+..|++..+.+|+..
T Consensus       354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~----~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~  419 (1157)
T PRK11447        354 LIQQGDAALKANNLAQAERLYQQARQVDNTDS----YAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT  419 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            34568889999999999999999999876543    5899999999999999999999999997888754

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=96.23  E-value=0.031  Score=53.67  Aligned_cols=64  Identities=16%  Similarity=0.179  Sum_probs=36.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      .+..|...+.+|+|.+|+.+|+.++...|.+.    .+.+.++.+|...|+.++|+..|++....+|+
T Consensus       162 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~  225 (899)
T TIGR02917       162 KLGLAQLALAENRFDEARALIDEVLTADPGNV----DALLLKGDLLLSLGNIELALAAYRKAIALRPN  225 (899)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Confidence            44445555566666666666666555443332    35666666666666666666666666544553

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK12370 invasion protein regulator; Provisional

Probab=96.17  E-value=0.053  Score=53.85  Aligned_cols=64  Identities=19%  Similarity=0.209  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 023077          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNH  236 (287)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~H  236 (287)
                      ...+..|...+..|+|.+|+.+|+.++...|.+..    +.++++.+|...|+.++|+++|+++...+
T Consensus       373 ~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~----~~~~~~~~~~~~g~~eeA~~~~~~~l~~~  436 (553)
T PRK12370        373 DIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA----AGITKLWITYYHTGIDDAIRLGDELRSQH  436 (553)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh----hHHHHHHHHHhccCHHHHHHHHHHHHHhc
Confidence            34566788899999999999999999998776543    45566666777899999999999887554

>TIGR00540 hemY_coli hemY protein

Probab=96.14  E-value=0.054  Score=51.49  Aligned_cols=55  Identities=13%  Similarity=0.097  Sum_probs=29.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       175 G~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      +..++.+|+|.+|.+.|+.+.+..|.+.    .+..+++.+|...|+.+.|+.+.+.|.
T Consensus       160 a~l~l~~~~~~~Al~~l~~l~~~~P~~~----~~l~ll~~~~~~~~d~~~a~~~l~~l~  214 (409)
T TIGR00540       160 TRILLAQNELHAARHGVDKLLEMAPRHK----EVLKLAEEAYIRSGAWQALDDIIDNMA  214 (409)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            4445555555555555555555433332    255555555555555555555555555

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.11  E-value=0.018  Score=35.48  Aligned_cols=32  Identities=41%  Similarity=0.645  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 023077          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPR  200 (287)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~  200 (287)
                      +..+..|...+..|+|.+|++.|++++...|.
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            34556666666666666666666666665553

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=96.06  E-value=0.029  Score=49.72  Aligned_cols=78  Identities=21%  Similarity=0.066  Sum_probs=58.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Q 023077          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP-SKNIRRQAADLR  249 (287)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP-d~qVRqQAKqLL  249 (287)
                      ...-+-..++.|++.++.+.|..+....+.+..    ++..++.+|...|+.++|+.+++++.+.+| ||.+.-.=..+|
T Consensus       183 ~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~----~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l  258 (280)
T PF13429_consen  183 RNALAWLLIDMGDYDEAREALKRLLKAAPDDPD----LWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADAL  258 (280)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCC----HCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHH----HHHHHHHHhcccccccccccccccccccccccccccccccccc
Confidence            344466777889999988888888876655554    778899999999999999999999997788 677776655555


Q ss_pred             HHh
Q 023077          250 YIL  252 (287)
Q Consensus       250 yIL  252 (287)
                      ...
T Consensus       259 ~~~  261 (280)
T PF13429_consen  259 EQA  261 (280)
T ss_dssp             T--
T ss_pred             ccc
Confidence            443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=96.01  E-value=0.025  Score=59.15  Aligned_cols=61  Identities=10%  Similarity=0.046  Sum_probs=41.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       174 aG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      -+....+++.|.+|+...+.++...|.    ...+++.++++++..|++++|+++|+++...||+
T Consensus       126 ~a~~L~~~~~~eeA~~~~~~~l~~~p~----~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~  186 (694)
T PRK15179        126 MLRGVKRQQGIEAGRAEIELYFSGGSS----SAREILLEAKSWDEIGQSEQADACFERLSRQHPE  186 (694)
T ss_pred             HHHHHHHhccHHHHHHHHHHHhhcCCC----CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC
Confidence            344444555555555555555542222    2258899999999999999999999999877776

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=95.97  E-value=0.13  Score=48.90  Aligned_cols=61  Identities=13%  Similarity=0.137  Sum_probs=46.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023077          173 ELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (287)
Q Consensus       173 eaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (287)
                      -.+..++.+|+|.+|++.++.+.+..|.+.    .+..+++.+|...|+.++|+.++..|.+..+
T Consensus       158 ~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~----~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~  218 (398)
T PRK10747        158 TRVRIQLARNENHAARHGVDKLLEVAPRHP----EVLRLAEQAYIRTGAWSSLLDILPSMAKAHV  218 (398)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC
Confidence            336777888888888888888777555444    4788888888888888888888888884444

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.95  E-value=0.071  Score=50.67  Aligned_cols=61  Identities=26%  Similarity=0.329  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 023077          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES  234 (287)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~  234 (287)
                      ...+.....+.+|+|+.+++.|+..+...|-+.+    ++..|-.+|..+|+...||..|++|.+
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~----~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEP----AYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchH----HHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            3455666778899999999999999998888877    899999999999999999999999983

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=95.92  E-value=0.033  Score=57.50  Aligned_cols=65  Identities=17%  Similarity=-0.027  Sum_probs=58.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      .+..|.....+|++.+|++.|++++...|.+.    .+++.|+.+|...|+.++|+++|++....+|+.
T Consensus       362 ~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~----~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~  426 (765)
T PRK10049        362 QSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ----GLRIDYASVLQARGWPRAAENELKKAEVLEPRN  426 (765)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Confidence            45678888899999999999999999877774    599999999999999999999999999889985

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=95.89  E-value=0.051  Score=45.36  Aligned_cols=67  Identities=18%  Similarity=0.316  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCC--------------hHHHHHHHHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR--------------HADCIALYKQLE  233 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq--------------~EkAIALCQ~L~  233 (287)
                      +...+..|...+..|+|.+|+.+|++++...|.+    ..+...++.+|...|+              .++|+.+++...
T Consensus        72 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~  147 (172)
T PRK02603         72 SYILYNMGIIYASNGEHDKALEYYHQALELNPKQ----PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAI  147 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHH
Confidence            4567888999999999999999999999976654    3477888999988888              356666666666


Q ss_pred             HhCCC
Q 023077          234 SNHPS  238 (287)
Q Consensus       234 ~~HPd  238 (287)
                      ...|+
T Consensus       148 ~~~p~  152 (172)
T PRK02603        148 RLAPN  152 (172)
T ss_pred             hhCch
Confidence            43433

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=95.81  E-value=0.054  Score=58.70  Aligned_cols=66  Identities=15%  Similarity=0.099  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      ...+..|....+.|+|.+|+..|+.++...|.+.    .+++.|+.+|...|+.++|+++|+.....+|+
T Consensus       610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~----~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~  675 (987)
T PRK09782        610 NAYVARATIYRQRHNVPAAVSDLRAALELEPNNS----NYQAALGYALWDSGDIAQSREMLERAHKGLPD  675 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            3445555555555555555555555555443332    25555555555555555555555555444443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=95.79  E-value=0.031  Score=52.83  Aligned_cols=63  Identities=21%  Similarity=0.276  Sum_probs=55.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          173 ELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       173 eaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      ..|+.++..|+|..||..|-++....|.+..    +.+.|..||+..|+.+.|-.-|.+..+-.|+.
T Consensus       105 ~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~----~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~  167 (257)
T COG5010         105 AQGKNQIRNGNFGEAVSVLRKAARLAPTDWE----AWNLLGAALDQLGRFDEARRAYRQALELAPNE  167 (257)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHhccCCCChh----hhhHHHHHHHHccChhHHHHHHHHHHHhccCC
Confidence            3799999999999999999999996666655    99999999999999999999999988666653

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=95.72  E-value=0.057  Score=48.46  Aligned_cols=63  Identities=22%  Similarity=0.163  Sum_probs=54.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023077          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (287)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (287)
                      ....|...+.+|+|.+|++.++++++..|.+    ..+...|+.+|...|+.++|+.+|++.....|
T Consensus       117 ~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~----~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~  179 (355)
T cd05804         117 LGMLAFGLEEAGQYDRAEEAARRALELNPDD----AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD  179 (355)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence            3456778899999999999999999977666    34888999999999999999999999885554

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=95.65  E-value=0.058  Score=57.43  Aligned_cols=76  Identities=12%  Similarity=0.194  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 023077          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLR  249 (287)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLL  249 (287)
                      ..+..|......|+|+.||++|+++++..|.+.    .+.+.|+++|...|+.++|+..++++....|.  .+.. ..+.
T Consensus       104 ~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~----~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~--~~~~-l~la  176 (822)
T PRK14574        104 GLASAARAYRNEKRWDQALALWQSSLKKDPTNP----DLISGMIMTQADAGRGGVVLKQATELAERDPT--VQNY-MTLS  176 (822)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc--hHHH-HHHH
Confidence            344456677788999999999999999888774    47789999999999999999999999977666  3333 5556


Q ss_pred             HHh
Q 023077          250 YIL  252 (287)
Q Consensus       250 yIL  252 (287)
                      ++.
T Consensus       177 yL~  179 (822)
T PRK14574        177 YLN  179 (822)
T ss_pred             HHH
Confidence            665

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.46  E-value=0.1  Score=50.51  Aligned_cols=98  Identities=20%  Similarity=0.167  Sum_probs=68.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHH----HHHHHH
Q 023077          174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRR----QAADLR  249 (287)
Q Consensus       174 aG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRq----QAKqLL  249 (287)
                      .+.+-.+-|+|..||+-+|.++.+.|..++    ++.-|-+||-+.|+.++||..|++-..-.|+-++-+    +|.+.|
T Consensus       121 RAAAy~~Lg~~~~AVkDce~Al~iDp~ysk----ay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l  196 (304)
T KOG0553|consen  121 RAAAYSKLGEYEDAVKDCESALSIDPHYSK----AYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKL  196 (304)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcChHHHH----HHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh
Confidence            344556789999999999999997777766    777899999999999999999999887788877543    444444


Q ss_pred             HHhcCCCCCCCcccc---ccc-CCCCcccc
Q 023077          250 YILQAPKLKISQEEM---VTI-PLIGSSYD  275 (287)
Q Consensus       250 yILEAPkLkrp~eW~---v~I-PdL~~~~d  275 (287)
                      .....+.-.+....+   +.. |++...+.
T Consensus       197 ~e~~~~~~~~~~~d~~~~ig~~Pd~~s~~~  226 (304)
T KOG0553|consen  197 NEPKSSAQASGSFDMAGLIGAFPDSRSMFN  226 (304)
T ss_pred             cCCCcccccccchhhhhhccCCccchhhhc
Confidence            443322233333322   223 77766664

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=95.36  E-value=0.097  Score=51.79  Aligned_cols=84  Identities=26%  Similarity=0.222  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHH
Q 023077          145 EKRMRVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHAD  224 (287)
Q Consensus       145 ~~~~rv~~~L~~~a~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~Ek  224 (287)
                      +|.--+..+|++--. |..+.+.|+=..+.++.++.+-+.+.|+.+|.+|++..+...+    |-|.|...+.+.|++++
T Consensus       158 ~KAId~A~~L~k~~~-q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvR----Asi~lG~v~~~~g~y~~  232 (389)
T COG2956         158 EKAIDVAERLVKLGG-QTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVR----ASIILGRVELAKGDYQK  232 (389)
T ss_pred             HHHHHHHHHHHHcCC-ccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcccee----hhhhhhHHHHhccchHH
Confidence            333344444443221 3344455555555666666666666666666666654444444    55556666666666666


Q ss_pred             HHHHHHHHH
Q 023077          225 CIALYKQLE  233 (287)
Q Consensus       225 AIALCQ~L~  233 (287)
                      |+..++.+.
T Consensus       233 AV~~~e~v~  241 (389)
T COG2956         233 AVEALERVL  241 (389)
T ss_pred             HHHHHHHHH
Confidence            666666655

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=95.30  E-value=0.19  Score=41.52  Aligned_cols=59  Identities=15%  Similarity=0.174  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHH-------HcCChHHHHHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYE-------ANNRHADCIALYK  230 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYq-------a~Gq~EkAIALCQ  230 (287)
                      +...+..|...+..|+|.+|+..++.++...+..    +.....++.+|.       ..|+.+.|+..|.
T Consensus        72 ~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~----~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~  137 (168)
T CHL00033         72 SYILYNIGLIHTSNGEHTKALEYYFQALERNPFL----PQALNNMAVICHYRGEQAIEQGDSEIAEAWFD  137 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence            3467889999999999999999999999875544    356777777777       8888885555554

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=95.22  E-value=0.14  Score=45.47  Aligned_cols=70  Identities=23%  Similarity=0.253  Sum_probs=44.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHH
Q 023077          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIR  242 (287)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd-~qVR  242 (287)
                      .......++..|+|.++++.|+.+....+..  ....+.+.++..|...|+.++|+.+|++..+.+|+ +.++
T Consensus       113 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~  183 (280)
T PF13429_consen  113 LLSALQLYYRLGDYDEAEELLEKLEELPAAP--DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDAR  183 (280)
T ss_dssp             -----H-HHHTT-HHHHHHHHHHHHH-T-----T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred             hhHHHHHHHHHhHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Confidence            3445566778888988888888877533322  22346667778888889999999999888878886 5554

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=95.20  E-value=0.19  Score=41.70  Aligned_cols=63  Identities=21%  Similarity=0.338  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      ..+..|..-..-|+|.+|+..|+.++...|. ....+.++..+|+++...|+.++|++++-...
T Consensus        40 a~i~lastlr~LG~~deA~~~L~~~~~~~p~-~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   40 ALIQLASTLRNLGRYDEALALLEEALEEFPD-DELNAALRVFLALALYNLGRPKEALEWLLEAL  102 (120)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            4677888889999999999999999987654 33456799999999999999999999998755

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.20  E-value=0.062  Score=33.06  Aligned_cols=32  Identities=19%  Similarity=0.282  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          207 EIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       207 EAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      ++.+.|+.+|...|+.++|+..|++....+|+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            57899999999999999999999999977775

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=95.18  E-value=0.095  Score=52.89  Aligned_cols=75  Identities=17%  Similarity=0.125  Sum_probs=64.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 023077          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRY  250 (287)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLy  250 (287)
                      ....|..++.+|+|.+|+..|++|+..-+  +   ..+.++|+.+|.-.|+.++|+..|++-..-.|.....-|.+++.+
T Consensus       423 ~~ala~~~~~~g~~~~A~~~l~rAl~L~p--s---~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~~~~~~f  497 (517)
T PRK10153        423 YEILAVQALVKGKTDEAYQAINKAIDLEM--S---WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLYWIENLVF  497 (517)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHHHHhccc
Confidence            33468888899999999999999999765  2   369999999999999999999999887768898888888887643

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.06  E-value=0.12  Score=40.15  Aligned_cols=77  Identities=12%  Similarity=0.034  Sum_probs=57.7

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCCCCch-----HHHHHHHHHHHHHcCChHHHHHHHHHHH---HhCCCHHHHHHHHH
Q 023077          176 QKAYGKGMYGRAIEFLEGALTIIPRPTFFG-----GEIQIWLAMAYEANNRHADCIALYKQLE---SNHPSKNIRRQAAD  247 (287)
Q Consensus       176 ~aALerGdY~qAIelLE~Ale~~~~~S~lG-----GEAQmwLAtAYqa~Gq~EkAIALCQ~L~---~~HPd~qVRqQAKq  247 (287)
                      ..++..|+|..|++.|..+..........+     .-+.+.++..+...|+.++|+..++.-+   ....|...=.+|-.
T Consensus         6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~   85 (94)
T PF12862_consen    6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALS   85 (94)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence            578999999999999999987766554433     4678889999999999999999998765   23445555555555


Q ss_pred             HHHHh
Q 023077          248 LRYIL  252 (287)
Q Consensus       248 LLyIL  252 (287)
                      .++.|
T Consensus        86 ~~~~l   90 (94)
T PF12862_consen   86 WLANL   90 (94)
T ss_pred             HHHHH
Confidence            55544

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=94.90  E-value=0.5  Score=47.29  Aligned_cols=66  Identities=17%  Similarity=0.024  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      ..++.+.--+..+.|..||++..++++..+.|..    +.+--.+||.+.|+.+.|+..+++.++-.|+.
T Consensus       259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K----ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N  324 (397)
T KOG0543|consen  259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK----ALYRRGQALLALGEYDLARDDFQKALKLEPSN  324 (397)
T ss_pred             HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh----HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc
Confidence            3667778888999999999999999998888887    99999999999999999999999999788865

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=94.81  E-value=0.5  Score=37.98  Aligned_cols=74  Identities=19%  Similarity=0.126  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCch------------------HHHHHHHHHHHHHcCChHHHHHH
Q 023077          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFG------------------GEIQIWLAMAYEANNRHADCIAL  228 (287)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lG------------------GEAQmwLAtAYqa~Gq~EkAIAL  228 (287)
                      .++.....|..+...|+-..+++.|+.++......--.+                  ..+...|+.+|...|+.++|+.+
T Consensus         5 ~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~   84 (146)
T PF03704_consen    5 RFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRL   84 (146)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence            466678888999999999999999999998887553322                  25667788899999999999999


Q ss_pred             HHHHHHhCCCHH
Q 023077          229 YKQLESNHPSKN  240 (287)
Q Consensus       229 CQ~L~~~HPd~q  240 (287)
                      |+.++..+|..+
T Consensus        85 ~~~~l~~dP~~E   96 (146)
T PF03704_consen   85 LQRALALDPYDE   96 (146)
T ss_dssp             HHHHHHHSTT-H
T ss_pred             HHHHHhcCCCCH
Confidence            999998888755

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.73  E-value=0.074  Score=33.25  Aligned_cols=31  Identities=29%  Similarity=0.597  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 023077          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIP  199 (287)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~  199 (287)
                      +..+..|..-+.+|+|.+||..|+.+++..|
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p   32 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence            4456677777777777777777777776655

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=94.65  E-value=0.55  Score=47.02  Aligned_cols=62  Identities=24%  Similarity=0.269  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      ..-..+..|.-+|.++.|++|-++||.++..-+..     ....||+-+|...|+.++|-..++.-.
T Consensus       327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-----~~~~~la~~~~~~g~~~~A~~~r~e~L  388 (400)
T COG3071         327 DPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA-----SDYAELADALDQLGEPEEAEQVRREAL  388 (400)
T ss_pred             ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-----hhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            35678889999999999999999999998855443     367999999999999999998887643

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=94.48  E-value=0.16  Score=51.63  Aligned_cols=66  Identities=18%  Similarity=0.163  Sum_probs=53.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (287)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (287)
                      .+=...-..+.|+|.+|+++|+.....+.-..    .+.-..|..|...|+.++|..+|+.|++++|+.-
T Consensus         7 lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~----~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~   72 (517)
T PF12569_consen    7 LLYKNSILEEAGDYEEALEHLEKNEKQILDKL----AVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNY   72 (517)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence            34444556788999999999999666444333    3788899999999999999999999999998754

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=94.38  E-value=0.083  Score=32.17  Aligned_cols=31  Identities=26%  Similarity=0.520  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 023077          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPR  200 (287)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~  200 (287)
                      ..|..|...+..|+|.+|++.|+.++...|.
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4789999999999999999999999998875

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=94.34  E-value=0.099  Score=35.18  Aligned_cols=41  Identities=22%  Similarity=0.096  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHH
Q 023077          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAM  214 (287)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAt  214 (287)
                      ..+..|......|++++|++.|+++++..|.+..    +++.|+.
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~----a~~~La~   43 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPE----AWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH----HHHHhhh
Confidence            3567789999999999999999999998886654    6666654

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=94.26  E-value=0.46  Score=49.11  Aligned_cols=70  Identities=20%  Similarity=0.166  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      +.++..-..|..+|..|+|..||.++.+++...|.+-.    ..=-.|-||-..|....|++-|++-++-+|+.
T Consensus       356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~----lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~  425 (539)
T KOG0548|consen  356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR----LYSNRAACYLKLGEYPEALKDAKKCIELDPNF  425 (539)
T ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH----HHHHHHHHHHHHhhHHHHHHHHHHHHhcCchH
Confidence            34666667799999999999999999999997765544    55557889999999999999888888666653

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.25  E-value=0.8  Score=41.88  Aligned_cols=81  Identities=21%  Similarity=0.258  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCC------CCCCch----HHHHHHHHHHHHHcCChH---HHHHHHH
Q 023077          165 RATAQLMFELGQKAYGKG-MYGRAIEFLEGALTIIP------RPTFFG----GEIQIWLAMAYEANNRHA---DCIALYK  230 (287)
Q Consensus       165 ~e~ae~~yeaG~aALerG-dY~qAIelLE~Ale~~~------~~S~lG----GEAQmwLAtAYqa~Gq~E---kAIALCQ  230 (287)
                      ...|...|+.|..++.++ +|..|+.+|+.+.+.++      ..++.+    ..+...||+||-..+..+   +|+.+-+
T Consensus        32 ~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~  111 (278)
T PF08631_consen   32 EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALR  111 (278)
T ss_pred             HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            456889999999999999 99999999999998842      334444    356778999999988754   5667777


Q ss_pred             HHHHhCCC-HHHHHHH
Q 023077          231 QLESNHPS-KNIRRQA  245 (287)
Q Consensus       231 ~L~~~HPd-~qVRqQA  245 (287)
                      .+...||+ +.+.-.+
T Consensus       112 ~l~~e~~~~~~~~~L~  127 (278)
T PF08631_consen  112 LLESEYGNKPEVFLLK  127 (278)
T ss_pred             HHHHhCCCCcHHHHHH
Confidence            78778888 5555333

It is also involved in sporulation [].

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=94.22  E-value=0.22  Score=45.25  Aligned_cols=80  Identities=21%  Similarity=0.302  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCC--CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH-HH
Q 023077          168 AQLMFELGQKAYGK-GMYGRAIEFLEGALTIIP--RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI-RR  243 (287)
Q Consensus       168 ae~~yeaG~aALer-GdY~qAIelLE~Ale~~~--~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV-Rq  243 (287)
                      ++...+.|...-.. |+|..||++++.|+....  .......+....+|..|...|+.++||.+|+++...+-+..+ +-
T Consensus       114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~  193 (282)
T PF14938_consen  114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY  193 (282)
T ss_dssp             HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence            44555556655566 799999999999998765  334556788889999999999999999999999855544332 33


Q ss_pred             HHHH
Q 023077          244 QAAD  247 (287)
Q Consensus       244 QAKq  247 (287)
                      .+++
T Consensus       194 ~~~~  197 (282)
T PF14938_consen  194 SAKE  197 (282)
T ss_dssp             HHHH
T ss_pred             hHHH
Confidence            4554

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=93.94  E-value=0.058  Score=35.40  Aligned_cols=33  Identities=21%  Similarity=0.163  Sum_probs=28.4

Q ss_pred             HHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHH
Q 023077          191 LEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIA  227 (287)
Q Consensus       191 LE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIA  227 (287)
                      |+++++..|.+..    +...|+.+|...|+.++|++
T Consensus         2 y~kAie~~P~n~~----a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    2 YKKAIELNPNNAE----AYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             hHHHHHHCCCCHH----HHHHHHHHHHHCcCHHhhcC
Confidence            6778887777666    99999999999999999974

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=93.83  E-value=0.27  Score=48.57  Aligned_cols=62  Identities=16%  Similarity=0.123  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      +......+...+.+|+|..|++.+.+++...|..-.    .+..||.+|...|+.++|+.....+-
T Consensus       234 ~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~----~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  234 SELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFE----TWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHH----HHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            666777888899999999999999999996665544    99999999999999999997665443

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=93.71  E-value=0.27  Score=48.83  Aligned_cols=71  Identities=21%  Similarity=0.276  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI  241 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV  241 (287)
                      +....-.|.-++.+|+|..||+.||.+++..+..   -+++---|..||...|+.++.+..-+.-...++++.+
T Consensus       214 vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y---l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~  284 (389)
T COG2956         214 VRASIILGRVELAKGDYQKAVEALERVLEQNPEY---LSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA  284 (389)
T ss_pred             eehhhhhhHHHHhccchHHHHHHHHHHHHhChHH---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH
Confidence            4456778999999999999999999999865544   3578999999999999999998877776656666554

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=93.61  E-value=0.75  Score=43.19  Aligned_cols=67  Identities=19%  Similarity=0.209  Sum_probs=41.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCC-CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHH
Q 023077          174 LGQKAYGKGMYGRAIEFLEGALTIIP-RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRR  243 (287)
Q Consensus       174 aG~aALerGdY~qAIelLE~Ale~~~-~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRq  243 (287)
                      .+.+-|.-|+...|...||++.+..| ..|+   --.+.++++|.+.|+..+|-+-++.+++.+|+++-+-
T Consensus       130 lA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p---d~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~  197 (251)
T COG4700         130 LAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP---DGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARI  197 (251)
T ss_pred             HHHHHHhhccHHHHHHHHHHHhhcCCccCCC---CchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHH
Confidence            34444444555555555555554443 2233   2456777888888888888888888887778877654

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=93.35  E-value=0.13  Score=40.60  Aligned_cols=30  Identities=17%  Similarity=0.201  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 023077          169 QLMFELGQKAYGKGMYGRAIEFLEGALTII  198 (287)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Ale~~  198 (287)
                      ...|..+...+..|+|..|++.|-.++...
T Consensus        23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d   52 (90)
T PF14561_consen   23 DARYALADALLAAGDYEEALDQLLELVRRD   52 (90)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            445555555555555555555555555433

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=93.31  E-value=0.17  Score=46.02  Aligned_cols=68  Identities=25%  Similarity=0.227  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CCCCchHHHHHHHHHHHHHc-CChHHHHHHHHHHHHh
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIP--RPTFFGGEIQIWLAMAYEAN-NRHADCIALYKQLESN  235 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~--~~S~lGGEAQmwLAtAYqa~-Gq~EkAIALCQ~L~~~  235 (287)
                      +-..|..+-..|.++++..||..|+.|+...-  ......+++..-++..|... |+.++||.+|++-.+-
T Consensus        74 Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~  144 (282)
T PF14938_consen   74 AAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAEL  144 (282)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            44567778888999999999999999998654  33455678899999999999 9999999999987643

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=93.31  E-value=0.17  Score=54.70  Aligned_cols=58  Identities=28%  Similarity=0.382  Sum_probs=27.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       172 yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      |..|.=-++.|.|.+|++.+++++...|.+.+    +++-|++-|+..|++++|...-.++.
T Consensus       453 ~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D----~Ri~Lasl~~~~g~~EkalEtL~~~~  510 (895)
T KOG2076|consen  453 YKLARCYMELGEYEEAIEFYEKVLILAPDNLD----ARITLASLYQQLGNHEKALETLEQII  510 (895)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhcCCCchh----hhhhHHHHHHhcCCHHHHHHHHhccc
Confidence            33444444444455555555554444444444    44445555555555554444444433

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.00  E-value=0.72  Score=44.75  Aligned_cols=75  Identities=21%  Similarity=0.257  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHH
Q 023077          149 RVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIAL  228 (287)
Q Consensus       149 rv~~~L~~~a~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIAL  228 (287)
                      .||+=|.+..-.      .-+..+..+..+++.|+|..|...|..++...+.+    +.+.+.||.+|-..|+.+.|-++
T Consensus       121 qlr~~ld~~~~~------~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~----~~~~~~la~~~l~~g~~e~A~~i  190 (304)
T COG3118         121 QLRQFLDKVLPA------EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPEN----SEAKLLLAECLLAAGDVEAAQAI  190 (304)
T ss_pred             HHHHHHHHhcCh------HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCccc----chHHHHHHHHHHHcCChHHHHHH
Confidence            355556655552      22336778899999999999999999999977777    45999999999999999999999


Q ss_pred             HHHHH
Q 023077          229 YKQLE  233 (287)
Q Consensus       229 CQ~L~  233 (287)
                      +-+|-
T Consensus       191 L~~lP  195 (304)
T COG3118         191 LAALP  195 (304)
T ss_pred             HHhCc
Confidence            98876

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=92.97  E-value=0.24  Score=30.69  Aligned_cols=31  Identities=32%  Similarity=0.555  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 023077          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIP  199 (287)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~  199 (287)
                      +..+..|..-...|+|..|+..|+++++..|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            4456667777777777777777777776554

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=92.67  E-value=0.26  Score=34.44  Aligned_cols=35  Identities=20%  Similarity=0.149  Sum_probs=28.9

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHH
Q 023077          210 IWLAMAYEANNRHADCIALYKQLESNHPS-KNIRRQ  244 (287)
Q Consensus       210 mwLAtAYqa~Gq~EkAIALCQ~L~~~HPd-~qVRqQ  244 (287)
                      |-++.+|...|+.++|+.+|++++..+|+ +.+.-+
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~   36 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYL   36 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHH
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            46899999999999999999999988885 333333

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=92.57  E-value=0.44  Score=51.71  Aligned_cols=69  Identities=16%  Similarity=0.209  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIR  242 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVR  242 (287)
                      .+.++-.+-.+|.+|++.+|..+|..++.+.|.+.-    +...|++.|+..|++++|.... .|. .|-+|+-.
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~----ay~tL~~IyEqrGd~eK~l~~~-llA-AHL~p~d~  207 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPI----AYYTLGEIYEQRGDIEKALNFW-LLA-AHLNPKDY  207 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchh----hHHHHHHHHHHcccHHHHHHHH-HHH-HhcCCCCh
Confidence            456788888899999999999999999998887765    9999999999999999997643 333 57776543

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=92.54  E-value=1.8  Score=39.23  Aligned_cols=67  Identities=18%  Similarity=0.141  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP--RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~--~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      .....++.|..-|..|+|..|+.+|++++....  .=..+-..+...|..|+...|+.++.+.+|=+|.
T Consensus       177 ~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  177 ASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL  245 (247)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            355678899999999999999999999976443  2256677899999999999999999999999887

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=92.06  E-value=0.43  Score=41.09  Aligned_cols=53  Identities=26%  Similarity=0.243  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHAD  224 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~Ek  224 (287)
                      +...++.++++|..|+|+-|++++.-++...|.+.    +++-++|.||.+.|....
T Consensus        70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~----~ar~l~A~al~~lg~~~~  122 (141)
T PF14863_consen   70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNE----EARQLKADALEQLGYQSE  122 (141)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-H----HHHHHHHHHHHHHHHH-S
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHHHHhcc
Confidence            56789999999999999999999999998666554    499999999998886654

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.05  E-value=0.5  Score=29.40  Aligned_cols=32  Identities=19%  Similarity=0.196  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          207 EIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       207 EAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      ++.+.++.+|...|+.++|+..|++-++-.|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            57889999999999999999999998866664

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=91.78  E-value=0.77  Score=36.86  Aligned_cols=63  Identities=19%  Similarity=0.084  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHH
Q 023077          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALY  229 (287)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALC  229 (287)
                      -+++...+.|+..|.+-...+||....+++...... +.-=.+.=+|++||+--|+..++++.-
T Consensus         4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~-~~rf~~lG~l~qA~~e~Gkyr~~L~fA   66 (80)
T PF10579_consen    4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDR-EDRFRVLGYLIQAHMEWGKYREMLAFA   66 (80)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467888999999999999999999999999866543 223366778999999999999998764

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=91.70  E-value=1.7  Score=41.76  Aligned_cols=131  Identities=19%  Similarity=0.206  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhccCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH---h
Q 023077          106 RRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRA--TAQLMFELGQKAY---G  180 (287)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~~a~~~a~~~e--~ae~~yeaG~aAL---e  180 (287)
                      .-+...+--..+.++.+..||.++..+-.+.++=.==-+-|-..=+-..+..|=..|.|+.  ..+...--|.+.+   +
T Consensus       126 ~~~~a~~~~~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~  205 (287)
T COG4235         126 ADPLAQPPAEQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAG  205 (287)
T ss_pred             hcccccCCCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Confidence            3344444445566666677777776666554443333333433333444444444454442  1222222222222   2


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077          181 KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (287)
Q Consensus       181 rGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (287)
                      +-+=.++..+|.+++...+.+.+    ++++|+++|.-.|+..+|++..+.|.+..|...
T Consensus       206 ~~~ta~a~~ll~~al~~D~~~ir----al~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~  261 (287)
T COG4235         206 QQMTAKARALLRQALALDPANIR----ALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD  261 (287)
T ss_pred             CcccHHHHHHHHHHHhcCCccHH----HHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence            33455677788888886666655    999999999999999999999999997666543

>smart00028 TPR Tetratricopeptide repeats

Probab=91.57  E-value=0.44  Score=26.11  Aligned_cols=30  Identities=17%  Similarity=0.168  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023077          208 IQIWLAMAYEANNRHADCIALYKQLESNHP  237 (287)
Q Consensus       208 AQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (287)
                      +.+.++.+|...|+.++|+..++..++..|
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            455666666677777777766666653333

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=91.44  E-value=0.33  Score=31.59  Aligned_cols=25  Identities=20%  Similarity=0.179  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          209 QIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       209 QmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      ...|+.+|...|+.++||.+|++..
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4678999999999999999999843

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=91.15  E-value=0.84  Score=47.24  Aligned_cols=71  Identities=18%  Similarity=0.214  Sum_probs=58.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchH------------------------------HHHHHHHHHHHHcC
Q 023077          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGG------------------------------EIQIWLAMAYEANN  220 (287)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGG------------------------------EAQmwLAtAYqa~G  220 (287)
                      .-+.|-+||..|||.+||.+|..++.+.|.|.-++.                              .+.--+.-|+.+.|
T Consensus         5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg   84 (539)
T KOG0548|consen    5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG   84 (539)
T ss_pred             HHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence            446799999999999999999999999998765543                              45666788999999


Q ss_pred             ChHHHHHHHHHHHHhCCCHHH
Q 023077          221 RHADCIALYKQLESNHPSKNI  241 (287)
Q Consensus       221 q~EkAIALCQ~L~~~HPd~qV  241 (287)
                      +.++|+.-|..=.+.-|+-.+
T Consensus        85 ~~~eA~~ay~~GL~~d~~n~~  105 (539)
T KOG0548|consen   85 DYEEAILAYSEGLEKDPSNKQ  105 (539)
T ss_pred             cHHHHHHHHHHHhhcCCchHH
Confidence            999999999876656676544

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=90.76  E-value=0.96  Score=46.34  Aligned_cols=55  Identities=24%  Similarity=0.285  Sum_probs=27.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       175 G~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      |...++.+++.+|++.|.+++...|....    .++-++.+|...|+.++||.+-+..+
T Consensus       347 ~~i~~~~nk~~~A~e~~~kal~l~P~~~~----l~~~~a~all~~g~~~eai~~L~~~~  401 (484)
T COG4783         347 GDILLEANKAKEAIERLKKALALDPNSPL----LQLNLAQALLKGGKPQEAIRILNRYL  401 (484)
T ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCCccH----HHHHHHHHHHhcCChHHHHHHHHHHh
Confidence            34445555555555555555554444322    45555555555555555555555544

>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins

Probab=90.62  E-value=1.2  Score=35.72  Aligned_cols=56  Identities=25%  Similarity=0.160  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCC
Q 023077          162 AERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR  221 (287)
Q Consensus       162 a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq  221 (287)
                      ..+...+...+..|..|+.-|||..|-..+.++...    .+.-.-..+.-|+|=+..||
T Consensus        53 ~rr~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~----~~~~~l~~L~AA~AA~~~gd  108 (108)
T PF07219_consen   53 RRRRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKL----SDNPLLNYLLAARAAQAQGD  108 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHcCC
Confidence            445566888999999999999999999999998664    22222355666676666664

These are membrane protein involved in a late step of protoheme IX synthesis [].

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=90.50  E-value=1  Score=46.00  Aligned_cols=67  Identities=21%  Similarity=0.177  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      .++..=+.|-.||.+|.|+.|-+.+..++.+.|.+...-....+-.|+++-..|+..+||+-|..-.
T Consensus       248 ~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al  314 (486)
T KOG0550|consen  248 KLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL  314 (486)
T ss_pred             HHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh
Confidence            3444556799999999999999999999999999988888888888999999999999999988766

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=90.10  E-value=1.8  Score=48.12  Aligned_cols=73  Identities=15%  Similarity=0.144  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCHHHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR-HADCIALYKQLESNHPSKNIRRQ  244 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq-~EkAIALCQ~L~~~HPd~qVRqQ  244 (287)
                      +++.++.++.|+...+|..||++.+++++..|.|+.    +++.|-.||-..|+ .++|-.-|..-.+--||.-+.=|
T Consensus         2 vK~aLK~Ak~al~nk~YeealEqskkvLk~dpdNYn----A~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWk   75 (1238)
T KOG1127|consen    2 VKTALKSAKDALRNKEYEEALEQSKKVLKEDPDNYN----AQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWK   75 (1238)
T ss_pred             hhhHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcch----hhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHH
Confidence            467899999999999999999999999999999998    89999999999999 99999999888867777655433

>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane

Probab=89.47  E-value=0.92  Score=38.47  Aligned_cols=39  Identities=26%  Similarity=0.387  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC
Q 023077          165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF  203 (287)
Q Consensus       165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~  203 (287)
                      ..-+....+.|+..+.+|+|..|+.+|-.|+..++.+..
T Consensus        60 e~~Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~   98 (121)
T PF02064_consen   60 ERFFLQQVQLGEQLLAQGDYEEAAEHFYNALKVCPQPAE   98 (121)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHH
Confidence            344778899999999999999999999999998877655

Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.

>smart00028 TPR Tetratricopeptide repeats

Probab=89.44  E-value=0.76  Score=25.12  Aligned_cols=30  Identities=33%  Similarity=0.604  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 023077          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIP  199 (287)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~  199 (287)
                      ..+..|...+..|+|..|+..|..++...|
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            356789999999999999999999987554

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=89.20  E-value=1.9  Score=43.28  Aligned_cols=78  Identities=19%  Similarity=0.198  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCch-----------HHHHHHHHHHHHHcCChHHHHHHHHH
Q 023077          163 ERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFG-----------GEIQIWLAMAYEANNRHADCIALYKQ  231 (287)
Q Consensus       163 ~~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lG-----------GEAQmwLAtAYqa~Gq~EkAIALCQ~  231 (287)
                      ++++.|...=+.|-.-|++|+|..|+..++.|+...+.....-           .-+.+-||++|-..++..+||..|-+
T Consensus       203 e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~k  282 (397)
T KOG0543|consen  203 ERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNK  282 (397)
T ss_pred             HHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHH
Confidence            4455555556677788888888888888888777665322211           13567789999999999999999998


Q ss_pred             HHHhCCCHHH
Q 023077          232 LESNHPSKNI  241 (287)
Q Consensus       232 L~~~HPd~qV  241 (287)
                      .. .+-...+
T Consensus       283 vL-e~~~~N~  291 (397)
T KOG0543|consen  283 VL-ELDPNNV  291 (397)
T ss_pred             HH-hcCCCch
Confidence            77 5544443

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=89.01  E-value=2.2  Score=31.21  Aligned_cols=43  Identities=16%  Similarity=0.181  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Q 023077          208 IQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQ  253 (287)
Q Consensus       208 AQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILE  253 (287)
                      -.++||.||.+.|+.++|...|..|.+..|+-.   ||+.|...++
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~---Qa~~L~~~i~   45 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR---QAQSLKELIE   45 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H---HHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH---HHHHHHHHHH
Confidence            468899999999999999999999998888864   5666665543

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=88.97  E-value=0.98  Score=27.88  Aligned_cols=31  Identities=16%  Similarity=0.228  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023077          207 EIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (287)
Q Consensus       207 EAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (287)
                      ++.+.++..|...|+.++|+..+++..+-.|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            5788999999999999999999999875444

...

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=88.91  E-value=5.5  Score=35.44  Aligned_cols=85  Identities=14%  Similarity=-0.033  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHH
Q 023077          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQA  245 (287)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQA  245 (287)
                      +..+..+-.|...+.+|+|..|+.+|..+.. ..+.++   -+.-.||.|+...|+..==.--.+-|. ..+|+..+.=.
T Consensus        42 ~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~-~~~~~p---~~kALlA~CL~~~~D~~Wr~~A~evle-~~~d~~a~~Lv  116 (160)
T PF09613_consen   42 EFPELDLFDGWLHIVRGDWDDALRLLRELEE-RAPGFP---YAKALLALCLYALGDPSWRRYADEVLE-SGADPDARALV  116 (160)
T ss_pred             CchHHHHHHHHHHHHhCCHHHHHHHHHHHhc-cCCCCh---HHHHHHHHHHHHcCChHHHHHHHHHHh-cCCChHHHHHH
Confidence            3456677889999999999999999999766 334444   378888999999998765444455565 78899999999


Q ss_pred             HHHHHHhcCC
Q 023077          246 ADLRYILQAP  255 (287)
Q Consensus       246 KqLLyILEAP  255 (287)
                      +.|+.+=+-+
T Consensus       117 ~~Ll~~~~~~  126 (160)
T PF09613_consen  117 RALLARADLE  126 (160)
T ss_pred             HHHHHhcccc
Confidence            9887765443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=88.88  E-value=1.5  Score=44.91  Aligned_cols=59  Identities=22%  Similarity=0.178  Sum_probs=52.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCC----CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 023077          174 LGQKAYGKGMYGRAIEFLEGALTIIP----RPTFFGGEIQIWLAMAYEANNRHADCIALYKQL  232 (287)
Q Consensus       174 aG~aALerGdY~qAIelLE~Ale~~~----~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L  232 (287)
                      -|..-+.++.|.+||-+|++|+++..    ...+.-+-+..-|+.+|.+.|+.++|-.+|+.-
T Consensus       247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A  309 (508)
T KOG1840|consen  247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERA  309 (508)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence            57777889999999999999998766    778888999999999999999999998888753

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=88.87  E-value=7.1  Score=37.15  Aligned_cols=87  Identities=24%  Similarity=0.119  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHH
Q 023077          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQA  245 (287)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQA  245 (287)
                      ..|...+..|.--+++|.|-.||--++.+++. -++++.--++..+|.-||...|=++.|-..-+-|....|+.+   |.
T Consensus       165 ~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~---~~  240 (254)
T COG4105         165 ALAGHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ---WY  240 (254)
T ss_pred             HHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc---ch
Confidence            44667788899999999999999999999987 556667789999999999999999999999999998888887   55


Q ss_pred             HHHHHHhcCCC
Q 023077          246 ADLRYILQAPK  256 (287)
Q Consensus       246 KqLLyILEAPk  256 (287)
                      +.--.++..+.
T Consensus       241 ~~~~~~~~~~~  251 (254)
T COG4105         241 KDAYRLLQRGG  251 (254)
T ss_pred             hhhhhcccccc
Confidence            55444444443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=88.87  E-value=0.92  Score=49.87  Aligned_cols=54  Identities=20%  Similarity=0.187  Sum_probs=25.4

Q ss_pred             HhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          179 YGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       179 LerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      |-+|+|..|..+-+-++... .+...=.+..+||+++|.+.|+.++|...|.+=+
T Consensus       281 yfK~dy~~v~~la~~ai~~t-~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~  334 (1018)
T KOG2002|consen  281 YFKKDYERVWHLAEHAIKNT-ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESL  334 (1018)
T ss_pred             hhcccHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            44555555555555554422 2222223344555555555555555555554444

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=88.03  E-value=5.9  Score=37.42  Aligned_cols=90  Identities=22%  Similarity=0.217  Sum_probs=68.6

Q ss_pred             HHHHHHHHHH--HHHHHHHHH---HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcC
Q 023077          146 KRMRVRRELE--KVAKEQAER---RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN  220 (287)
Q Consensus       146 ~~~rv~~~L~--~~a~~~a~~---~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~G  220 (287)
                      --|+++++|.  .--+|.++.   -.+.+..|..|.++.+-|+|.+|+.+++++++-.=...+   ++.+.||.|.-+.|
T Consensus        62 ~~~a~~q~ldP~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~---a~lLglA~Aqfa~~  138 (251)
T COG4700          62 LLMALQQKLDPERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDA---AMLLGLAQAQFAIQ  138 (251)
T ss_pred             HHHHHHHhcChhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCH---HHHHHHHHHHHhhc
Confidence            3455666653  222333333   356788999999999999999999999999874434444   68889999999999


Q ss_pred             ChHHHHHHHHHHHHhCCC
Q 023077          221 RHADCIALYKQLESNHPS  238 (287)
Q Consensus       221 q~EkAIALCQ~L~~~HPd  238 (287)
                      +...|..+..+|-..||.
T Consensus       139 ~~A~a~~tLe~l~e~~pa  156 (251)
T COG4700         139 EFAAAQQTLEDLMEYNPA  156 (251)
T ss_pred             cHHHHHHHHHHHhhcCCc
Confidence            999999999999866654

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=88.02  E-value=1.3  Score=27.83  Aligned_cols=27  Identities=26%  Similarity=0.262  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          207 EIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       207 EAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      .++..|+.+|...|+.++|+.+|++..
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al   29 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEAL   29 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence            367789999999999999999988876

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=87.90  E-value=0.77  Score=28.27  Aligned_cols=24  Identities=21%  Similarity=0.183  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHH
Q 023077          207 EIQIWLAMAYEANNRHADCIALYK  230 (287)
Q Consensus       207 EAQmwLAtAYqa~Gq~EkAIALCQ  230 (287)
                      .+.+.|+.+|...|+.++|.++++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            467889999999999999988876

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=87.49  E-value=1.7  Score=43.99  Aligned_cols=69  Identities=17%  Similarity=0.182  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      ..++.+..+.+.+.|..|++.-|+++...|.-+..--.+.-.+.++|..-|+.-+||.-|....+--|+
T Consensus       271 K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~  339 (504)
T KOG0624|consen  271 KSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD  339 (504)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch
Confidence            377778888888888888888888887666545544445556677777777777777777777643343

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=87.44  E-value=3.4  Score=37.71  Aligned_cols=70  Identities=23%  Similarity=0.312  Sum_probs=52.5

Q ss_pred             CCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 023077          182 GMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR-----------HADCIALYKQLESNHPSKNIRRQAADLRY  250 (287)
Q Consensus       182 GdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq-----------~EkAIALCQ~L~~~HPd~qVRqQAKqLLy  250 (287)
                      ..|.+||+.|+.|+.+.|....    +.+.|..||...|.           .++|...+++-.+.-|+.++-+.+=++-.
T Consensus        49 ~miedAisK~eeAL~I~P~~hd----Alw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~  124 (186)
T PF06552_consen   49 KMIEDAISKFEEALKINPNKHD----ALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA  124 (186)
T ss_dssp             HHHHHHHHHHHHHHHH-TT-HH----HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCchHH----HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            3678899999999998877665    89999999988776           67888888888888999888887766542


Q ss_pred             HhcCCCC
Q 023077          251 ILQAPKL  257 (287)
Q Consensus       251 ILEAPkL  257 (287)
                        .||.|
T Consensus       125 --kap~l  129 (186)
T PF06552_consen  125 --KAPEL  129 (186)
T ss_dssp             --THHHH
T ss_pred             --hhHHH
Confidence              45544

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=87.26  E-value=6.3  Score=40.11  Aligned_cols=94  Identities=17%  Similarity=0.147  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-----CCCchHHHHHHHHHHHHHcCChHHHHHHHH--------HH
Q 023077          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPR-----PTFFGGEIQIWLAMAYEANNRHADCIALYK--------QL  232 (287)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~-----~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ--------~L  232 (287)
                      -.+...+-.+..++-+|+|..|...++.+......     ....+..+.+.+++-|++.|+.+.|...|+        ..
T Consensus       359 l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~  438 (608)
T PF10345_consen  359 LQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAA  438 (608)
T ss_pred             HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhh
Confidence            44667788899999999999999999988866542     245677899999999999999999999998        55


Q ss_pred             HHhCCCHHHHHHHH-HHHHHhcCCCCCC
Q 023077          233 ESNHPSKNIRRQAA-DLRYILQAPKLKI  259 (287)
Q Consensus       233 ~~~HPd~qVRqQAK-qLLyILEAPkLkr  259 (287)
                      ..+.+..++.--|. .+.-|+..|.=+.
T Consensus       439 ~~~~~~~El~ila~LNl~~I~~~~~~~~  466 (608)
T PF10345_consen  439 NRKSKFRELYILAALNLAIILQYESSRD  466 (608)
T ss_pred             ccCCcchHHHHHHHHHHHHHhHhhcccc
Confidence            55777888887776 4666777664433

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=87.15  E-value=5.7  Score=38.67  Aligned_cols=67  Identities=18%  Similarity=0.228  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHH--cCChHHHHHHHHHHHHhCCC
Q 023077          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA--NNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa--~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      ......+..+|.+++|+.|.++|+.++...+..-.  -+..-.|+.||.+  ..++.+|..+.+.+. .+..
T Consensus       132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~-~~~~  200 (379)
T PF09670_consen  132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLL-KRDK  200 (379)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHH-HHhh
Confidence            44667788999999999999999999875333322  4677778888886  778999999999888 4443

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=86.91  E-value=2.6  Score=39.48  Aligned_cols=75  Identities=23%  Similarity=0.212  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHhCC-CHHHHHH
Q 023077          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRH-ADCIALYKQLESNHP-SKNIRRQ  244 (287)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~-EkAIALCQ~L~~~HP-d~qVRqQ  244 (287)
                      +.....-.+..-+.+|+|.+|.+.|+.++...+.    -..+..-|++++.-.|+. +.+-.+-.+|...|| +|-+...
T Consensus       200 t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~----~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~  275 (290)
T PF04733_consen  200 TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN----DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDL  275 (290)
T ss_dssp             SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC----HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC----CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHH
Confidence            3445556677778888888888888887764433    245777888888888887 666677777777777 4544444


Q ss_pred             H
Q 023077          245 A  245 (287)
Q Consensus       245 A  245 (287)
                      +
T Consensus       276 ~  276 (290)
T PF04733_consen  276 A  276 (290)
T ss_dssp             H
T ss_pred             H
Confidence            3

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=86.80  E-value=5.9  Score=35.25  Aligned_cols=84  Identities=17%  Similarity=0.118  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD  247 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKq  247 (287)
                      .+..+-.|.-.+.+|+|.+|+..|..+.. ...+++.   +.-.+|.|+.+.|+-.==.--.+-|. ..++++...-.+.
T Consensus        44 ~e~d~~dg~l~i~rg~w~eA~rvlr~l~~-~~~~~p~---~kAL~A~CL~al~Dp~Wr~~A~~~le-~~~~~~a~~Lv~a  118 (153)
T TIGR02561        44 KELDMFDGWLLIARGNYDEAARILRELLS-SAGAPPY---GKALLALCLNAKGDAEWHVHADEVLA-RDADADAVALVRA  118 (153)
T ss_pred             cccchhHHHHHHHcCCHHHHHHHHHhhhc-cCCCchH---HHHHHHHHHHhcCChHHHHHHHHHHH-hCCCHhHHHHHHH
Confidence            44566779999999999999999999776 3444443   77788999999999876666666676 8899999999999


Q ss_pred             HHHHhcCCC
Q 023077          248 LRYILQAPK  256 (287)
Q Consensus       248 LLyILEAPk  256 (287)
                      |+.+++.|.
T Consensus       119 l~g~~~~~~  127 (153)
T TIGR02561       119 LLGAQQPPA  127 (153)
T ss_pred             HhccccCCc
Confidence            988887774

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=86.74  E-value=1.9  Score=27.07  Aligned_cols=31  Identities=35%  Similarity=0.459  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTII  198 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~  198 (287)
                      +......|...+.+|+|.+|+.+++.++...
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            4567788999999999999999999998754

>PRK04841 transcriptional regulator MalT; Provisional

Probab=86.73  E-value=2.5  Score=43.39  Aligned_cols=65  Identities=12%  Similarity=-0.004  Sum_probs=51.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC--chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 023077          172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTF--FGGEIQIWLAMAYEANNRHADCIALYKQLESNH  236 (287)
Q Consensus       172 yeaG~aALerGdY~qAIelLE~Ale~~~~~S~--lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~H  236 (287)
                      ...|.....+|+|.+|+.+|+.++........  .-..+.++++.+|...|+.++|+...++-..-.
T Consensus       695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la  761 (903)
T PRK04841        695 RNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA  761 (903)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            46788889999999999999999986543322  224688999999999999999998877665333

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.68  E-value=2.5  Score=44.19  Aligned_cols=61  Identities=20%  Similarity=0.261  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      ...=..|-..|..|.|.+||.++..|++.+|.-.-+    .--.+-||...|+.++-|.-|-+-.
T Consensus       116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiF----YsNraAcY~~lgd~~~Vied~TkAL  176 (606)
T KOG0547|consen  116 AALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIF----YSNRAACYESLGDWEKVIEDCTKAL  176 (606)
T ss_pred             HHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchh----hhhHHHHHHHHhhHHHHHHHHHHHh
Confidence            344567999999999999999999999988874332    2234566666666666666665544

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.57  E-value=1.4  Score=46.00  Aligned_cols=67  Identities=18%  Similarity=0.338  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      ....|..|+--|--++|..||+=|++++.+.|.+--    ++++|+-|...+++.+.+...++.-++++|+
T Consensus       394 ~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~----~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~  460 (606)
T KOG0547|consen  394 PDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAY----AYIQLCCALYRQHKIAESMKTFEEAKKKFPN  460 (606)
T ss_pred             CchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            345788899999999999999999999997776654    8999999999999999999999999999997

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=86.07  E-value=1.7  Score=28.18  Aligned_cols=27  Identities=37%  Similarity=0.592  Sum_probs=21.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 023077          171 MFELGQKAYGKGMYGRAIEFLEGALTI  197 (287)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Ale~  197 (287)
                      ....|.....+|+|++||+++++++..
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            356788899999999999999996643

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=85.93  E-value=10  Score=27.71  Aligned_cols=62  Identities=29%  Similarity=0.419  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHH-HHHHcCChHHHHHHHHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAM-AYEANNRHADCIALYKQLE  233 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAt-AYqa~Gq~EkAIALCQ~L~  233 (287)
                      ....+..|......++|..++..+..+....+.+    .....+... +|...|+.++|+..++...
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  157 (291)
T COG0457          95 AEALLNLGLLLEALGKYEEALELLEKALALDPDP----DLAEALLALGALYELGDYEEALELYEKAL  157 (291)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc----chHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3445566666666677777777777766644443    124444444 6777777777777777655

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=85.50  E-value=2.6  Score=46.56  Aligned_cols=72  Identities=13%  Similarity=0.218  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (287)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (287)
                      ..++..|..|..-..+|+|..|-.++-.++...+.+.-+   ..+.|++-|...|+.+.|+..+.++.++.|+-.
T Consensus       305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l---~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~  376 (1018)
T KOG2002|consen  305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVL---PLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNY  376 (1018)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccc---cccchhHHHHHhchHHHHHHHHHHHHHhCcchH
Confidence            347789999999999999999999999999877777554   777888889999999999999999998898854

>PRK04841 transcriptional regulator MalT; Provisional

Probab=85.21  E-value=7.6  Score=39.95  Aligned_cols=64  Identities=13%  Similarity=0.021  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----CCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRP----TFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~----S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      ..+..|...+.+|+|..|.++++.++......    +.....+...++.+|...|+.++|.++|+...
T Consensus       533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al  600 (903)
T PRK04841        533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGL  600 (903)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhH
Confidence            34456778899999999999999988765432    12233455677888888899999988888764

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=85.14  E-value=11  Score=38.48  Aligned_cols=113  Identities=20%  Similarity=0.177  Sum_probs=75.8

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023077          100 DWEKEMRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLMFELGQKAY  179 (287)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~~a~~~a~~~e~ae~~yeaG~aAL  179 (287)
                      |+-...-+|---.-.|-+||.-+.....-+..+.+.     +            +..-|+++-.-..+-....+..+.|+
T Consensus       104 DF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~-----~------------~~~eaqskl~~~~e~~~l~~ql~s~~  166 (504)
T KOG0624|consen  104 DFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSN-----G------------LVLEAQSKLALIQEHWVLVQQLKSAS  166 (504)
T ss_pred             cHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCc-----c------------hhHHHHHHHHhHHHHHHHHHHHHHHh
Confidence            444444444444455667777666666666666652     2            22223333334444555667788999


Q ss_pred             hcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          180 GKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       180 erGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      ..|||..||+++..+++..+=.-+    .+..=|.||.+.|+..+||.=-+...
T Consensus       167 ~~GD~~~ai~~i~~llEi~~Wda~----l~~~Rakc~i~~~e~k~AI~Dlk~as  216 (504)
T KOG0624|consen  167 GSGDCQNAIEMITHLLEIQPWDAS----LRQARAKCYIAEGEPKKAIHDLKQAS  216 (504)
T ss_pred             cCCchhhHHHHHHHHHhcCcchhH----HHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            999999999999999996654444    77788889999999999987665544

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=85.03  E-value=3.8  Score=42.57  Aligned_cols=85  Identities=22%  Similarity=0.208  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH---HHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK---NIRRQ  244 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~---qVRqQ  244 (287)
                      .++.+++|+..|.+-+..+..-.+=.+.  ....+....-+..-||++....|+.++||..++.|.+-+|.-   .|+.+
T Consensus       223 ~rqAvkAgE~~lg~s~~~~~~g~~~e~~--~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~Iren  300 (539)
T PF04184_consen  223 LRQAVKAGEASLGKSQFLQHHGHFWEAW--HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIREN  300 (539)
T ss_pred             HHHHHHHHHHhhchhhhhhcccchhhhh--hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHH
Confidence            4455566666666543333222221112  223444445566779999999999999999999998567753   35555


Q ss_pred             HHHHHHHhcC
Q 023077          245 AADLRYILQA  254 (287)
Q Consensus       245 AKqLLyILEA  254 (287)
                      --..|-++++
T Consensus       301 Lie~LLelq~  310 (539)
T PF04184_consen  301 LIEALLELQA  310 (539)
T ss_pred             HHHHHHhcCC
Confidence            4444444443

The molecular function of this protein is uncertain.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=85.01  E-value=26  Score=35.49  Aligned_cols=62  Identities=16%  Similarity=0.131  Sum_probs=54.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 023077          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNH  236 (287)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~H  236 (287)
                      .+..+...+.+|+|..|-..+..+....|.+..    +.-..+.+|...|+-+...++-.+|.+.+
T Consensus       156 ~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~----vlrLa~r~y~~~g~~~~ll~~l~~L~ka~  217 (400)
T COG3071         156 ELTRARLLLNRRDYPAARENVDQLLEMTPRHPE----VLRLALRAYIRLGAWQALLAILPKLRKAG  217 (400)
T ss_pred             HHHHHHHHHhCCCchhHHHHHHHHHHhCcCChH----HHHHHHHHHHHhccHHHHHHHHHHHHHcc
Confidence            566678889999999999999999997766665    99999999999999999999999998554

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=84.42  E-value=17  Score=34.86  Aligned_cols=75  Identities=19%  Similarity=0.134  Sum_probs=51.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 023077          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRY  250 (287)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLy  250 (287)
                      ..+.|.+.+..+.+..||.-.-+++++-|.+-    .|..--|-||...-..++|+.=|++|...  +|..+ +|+.-..
T Consensus       137 y~Nraaa~iKl~k~e~aI~dcsKaiel~pty~----kAl~RRAeayek~ek~eealeDyKki~E~--dPs~~-ear~~i~  209 (271)
T KOG4234|consen  137 YSNRAAALIKLRKWESAIEDCSKAIELNPTYE----KALERRAEAYEKMEKYEEALEDYKKILES--DPSRR-EAREAIA  209 (271)
T ss_pred             HhhhHHHHHHhhhHHHHHHHHHhhHhcCchhH----HHHHHHHHHHHhhhhHHHHHHHHHHHHHh--CcchH-HHHHHHH
Confidence            34455566666666666666666666444333    35556688999999999999999999954  45544 6776655


Q ss_pred             Hh
Q 023077          251 IL  252 (287)
Q Consensus       251 IL  252 (287)
                      -|
T Consensus       210 rl  211 (271)
T KOG4234|consen  210 RL  211 (271)
T ss_pred             hc
Confidence            55

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=83.89  E-value=11  Score=29.63  Aligned_cols=49  Identities=22%  Similarity=0.166  Sum_probs=39.8

Q ss_pred             HHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          187 AIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       187 AIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      .|+-|+..++..|.+.    ++++.||.+|...|+.+.|+..+-.+.+++|+.
T Consensus         7 ~~~al~~~~a~~P~D~----~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    7 DIAALEAALAANPDDL----DARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHHHSTT-H----HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             cHHHHHHHHHcCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            5778888898666554    599999999999999999999999999777665

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=83.87  E-value=4  Score=36.25  Aligned_cols=80  Identities=20%  Similarity=0.199  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHhc---CCHHHHHHHHHHHHh-hCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHH
Q 023077          167 TAQLMFELGQKAYGK---GMYGRAIEFLEGALT-IIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIR  242 (287)
Q Consensus       167 ~ae~~yeaG~aALer---GdY~qAIelLE~Ale-~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVR  242 (287)
                      +.+..|+-+-.....   -+-++-|.+||..+. .+|...+   +--++||.+|...|+.++|+.+|..|.++-||..  
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rR---e~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~--  105 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRR---ECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR--  105 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccch---hhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH--
Confidence            345556666555543   456778999999996 5555555   5789999999999999999999999997777764  


Q ss_pred             HHHHHHHHHh
Q 023077          243 RQAADLRYIL  252 (287)
Q Consensus       243 qQAKqLLyIL  252 (287)
                       ||..|-.-+
T Consensus       106 -Qa~~Lk~~i  114 (149)
T KOG3364|consen  106 -QALELKETI  114 (149)
T ss_pred             -HHHHHHHHH
Confidence             555554333

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=83.69  E-value=13  Score=35.57  Aligned_cols=71  Identities=17%  Similarity=0.148  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHH--HHHHHHHcCChHHHHHHHHHHHHhCC
Q 023077          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIW--LAMAYEANNRHADCIALYKQLESNHP  237 (287)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmw--LAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (287)
                      +.+...-..|-..|..|+|-.|...+-.|+..+|..+.. -+..++  =|-|....+..+.||.-|-+-+.-+|
T Consensus        93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e-~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p  165 (271)
T KOG4234|consen   93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTE-ERSILYSNRAAALIKLRKWESAIEDCSKAIELNP  165 (271)
T ss_pred             HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHH-HHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc
Confidence            334445568999999999999999999999999977662 222222  36789999999999999988875666

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=83.28  E-value=2.9  Score=29.43  Aligned_cols=35  Identities=29%  Similarity=0.416  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 023077          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP  201 (287)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~  201 (287)
                      .....+..|...+..|+|..|++.|+.+++..|.+
T Consensus        28 ~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~   62 (73)
T PF13371_consen   28 DPELWLQRARCLFQLGRYEEALEDLERALELSPDD   62 (73)
T ss_pred             cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence            35667889999999999999999999999977733

>PRK11619 lytic murein transglycosylase; Provisional

Probab=82.99  E-value=9.5  Score=39.95  Aligned_cols=68  Identities=21%  Similarity=0.148  Sum_probs=49.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 023077          175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADL  248 (287)
Q Consensus       175 G~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqL  248 (287)
                      -..|+..|++.....++...    +.....-++.++|+++|+.+.|+.++|..+|+.+. + +..=--.-|..-
T Consensus       319 ~r~Al~~~dw~~~~~~i~~L----~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a-~-~~~fYG~LAa~~  386 (644)
T PRK11619        319 VRMALGTGDRRGLNTWLARL----PMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM-Q-QRGFYPMVAAQR  386 (644)
T ss_pred             HHHHHHccCHHHHHHHHHhc----CHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh-c-CCCcHHHHHHHH
Confidence            34688899998877777663    33333346799999999999999999999999997 3 433333334433

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=82.86  E-value=16  Score=26.68  Aligned_cols=58  Identities=24%  Similarity=0.375  Sum_probs=36.0

Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          178 AYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       178 ALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      ....|+|..|+..+..++...+..   ...+...+...|...|+.++|+..+.......|.
T Consensus       177 ~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  234 (291)
T COG0457         177 LEALGRYEEALELLEKALKLNPDD---DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD  234 (291)
T ss_pred             HHHhcCHHHHHHHHHHHHhhCccc---chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence            445566777777777666654443   3346666666777777777777777666644444

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=82.74  E-value=2.7  Score=29.38  Aligned_cols=34  Identities=15%  Similarity=0.183  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077          207 EIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (287)
Q Consensus       207 EAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (287)
                      ++...++..|...|+.++||..|.+.++.+|+..
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~   37 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNA   37 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence            5788899999999999999999999998888753

...

>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=82.71  E-value=6.8  Score=41.06  Aligned_cols=65  Identities=15%  Similarity=0.148  Sum_probs=50.3

Q ss_pred             hcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 023077          180 GKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADL  248 (287)
Q Consensus       180 erGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqL  248 (287)
                      ++.-..+++.+.|..+.    .+.......+.-|.-|.-.|++++|-++|+.|+.+||+.---.||++|
T Consensus        20 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (578)
T PRK15490         20 QEKKLAQAVALIDSELP----TEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNNDEARYEYARRL   84 (578)
T ss_pred             HHhhHHHHHHHHHHhCC----ccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCcchHHHHHHHH
Confidence            33445556666665443    333445578888999999999999999999999999998888999987

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=82.24  E-value=9.6  Score=37.86  Aligned_cols=71  Identities=14%  Similarity=0.026  Sum_probs=57.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHH
Q 023077          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAA  246 (287)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAK  246 (287)
                      .+-.+...+..++..+||+++..++...|.+    ..+....|..|...|+.+.|+.++++.+ ...-.+.+-|+.
T Consensus       203 ~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d----~~LL~~Qa~fLl~k~~~~lAL~iAk~av-~lsP~~f~~W~~  273 (395)
T PF09295_consen  203 AVLLARVYLLMNEEVEAIRLLNEALKENPQD----SELLNLQAEFLLSKKKYELALEIAKKAV-ELSPSEFETWYQ  273 (395)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCchhHHHHHH
Confidence            3445666777889999999999999866655    5577778888999999999999999999 565666777765

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=81.59  E-value=4.4  Score=43.81  Aligned_cols=62  Identities=26%  Similarity=0.278  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      +..+++.|-.-.++|....|+.+++++++..|.-    ..+---|+..|+.+|..++||..|+.-+
T Consensus       354 adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~----aaa~nNLa~i~kqqgnl~~Ai~~Ykeal  415 (966)
T KOG4626|consen  354 ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEF----AAAHNNLASIYKQQGNLDDAIMCYKEAL  415 (966)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhh----hhhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence            6778888888889999999999999998855443    4477888999999999999999998877

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=81.15  E-value=3  Score=43.73  Aligned_cols=56  Identities=21%  Similarity=0.389  Sum_probs=46.2

Q ss_pred             HhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          179 YGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       179 LerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      ++-.=...||.+||++.-+.|..+.    -||..|.++...|..++|..+|+.+-.++|.
T Consensus       637 idtqf~ekai~y~ekaaliqp~~~k----wqlmiasc~rrsgnyqka~d~yk~~hrkfpe  692 (840)
T KOG2003|consen  637 IDTQFSEKAINYFEKAALIQPNQSK----WQLMIASCFRRSGNYQKAFDLYKDIHRKFPE  692 (840)
T ss_pred             HhhHHHHHHHHHHHHHHhcCccHHH----HHHHHHHHHHhcccHHHHHHHHHHHHHhCcc
Confidence            4455567899999997765555454    8999999999999999999999999878885

>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB)

Probab=80.88  E-value=2.8  Score=39.71  Aligned_cols=49  Identities=22%  Similarity=0.306  Sum_probs=41.9

Q ss_pred             cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          181 KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       181 rGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      ....-+||-+||.++...|.+.    ++++||+..|.-.|-...|..+|..|-
T Consensus       196 ~~~l~~Ai~lLE~~l~~s~~n~----~~~LlLvrlY~~LG~~~~A~~~~~~L~  244 (365)
T PF09797_consen  196 SEYLLQAIALLEHALKKSPHNY----QLKLLLVRLYSLLGAGSLALEHYESLD  244 (365)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHhcC
Confidence            4556789999999999555444    599999999999999999999999886

The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=80.51  E-value=2.9  Score=44.26  Aligned_cols=60  Identities=17%  Similarity=0.177  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      ..|=.|...+++++|..|.=+|.+|+.+-|.++-    +.-.+-+.|...|+.++|+.+|.+-.
T Consensus       491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsv----i~~~~g~~~~~~k~~d~AL~~~~~A~  550 (638)
T KOG1126|consen  491 AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSV----ILCHIGRIQHQLKRKDKALQLYEKAI  550 (638)
T ss_pred             HHHhhhhheeccchhhHHHHHHHhhhcCCccchh----HHhhhhHHHHHhhhhhHHHHHHHHHH
Confidence            4455588899999999999999999998777776    78888899999999999999998876

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=80.23  E-value=9.5  Score=34.52  Aligned_cols=72  Identities=13%  Similarity=0.099  Sum_probs=53.3

Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCCCCC--chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH----HHHHHHHHHH
Q 023077          177 KAYGKGMYGRAIEFLEGALTIIPRPTF--FGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK----NIRRQAADLR  249 (287)
Q Consensus       177 aALerGdY~qAIelLE~Ale~~~~~S~--lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~----qVRqQAKqLL  249 (287)
                      ...++.=+..|+++|+.+......+..  -...+.+.++--+...|+.++|+.++..++ .||+.    .+.+.|+.+-
T Consensus       134 ~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi-~~~~~s~~~~l~~~AR~~w  211 (214)
T PF09986_consen  134 EENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVI-GSKKASKEPKLKDMARDQW  211 (214)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-cCCCCCCcHHHHHHHHHHH
Confidence            344445578899999998875554222  224677888999999999999999999999 77753    5577777654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	287
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	2e-06
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	1e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 1e-06
 Identities = 38/250 (15%), Positives = 74/250 (29%), Gaps = 77/250 (30%)

Query: 78  VDFDAGSSDEENG-----NGNGEKEEYDWE--KEMRRRV---KEIEEMRE---------- 117
           +DF+ G    +         +   + +D +  ++M + +   +EI+ +            
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 118 ----LEKKAEE----------------LQSKAEEDDSESEAKEETEEEKRMRVRRELEKV 157
               L  K EE                L S  + +  +         E+R R+  + +  
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 158 AKEQAERRATAQLMFELGQKAYG---------KGMYGR-----AIEFLEGALTIIPRPTF 203
           AK    R    Q   +L Q              G+ G      A++              
Sbjct: 127 AKYNVSRL---QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD----VCLSYKVQCK 179

Query: 204 FGGEIQIWLAMAYEANNRHADCI----ALYKQLESN-----HPSKNIRRQAAD----LRY 250
              +I  WL +     N     +     L  Q++ N       S NI+ +       LR 
Sbjct: 180 MDFKI-FWLNLKNC--NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 251 ILQAPKLKIS 260
           +L++   +  
Sbjct: 237 LLKSKPYENC 246

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 45.9 bits (108), Expect = 2e-06
 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 101 WEKEMRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKE 160
           W +E R+R++E++     +   +E + KA++D  E   ++  + EK     R  +K   +
Sbjct: 90  WREEQRKRLQELDA--ASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQ 147

Query: 161 QAE 163
           Q +
Sbjct: 148 QPD 150

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 44.4 bits (104), Expect = 1e-05
 Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 104 EMRRRVKEIEEMREL-EKKAEELQSK-AEEDDSESEAKEETEEEKRMRVRRELEKVAKEQ 161
           +  R  +E E +R+  E++ + LQ   A     E E +E+ +++     +R+ E+V K +
Sbjct: 76  QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 135

Query: 162 AERRATAQ 169
              R   +
Sbjct: 136 INNRIADK 143

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 16/75 (21%), Positives = 31/75 (41%)

Query: 95  EKEEYDWEKEMRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRREL 154
           ++E    + E R   +  +    LE K  +LQ K +E + E ++  E      +    E 
Sbjct: 903 KRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTET 962

Query: 155 EKVAKEQAERRATAQ 169
           EK+  +    R + +
Sbjct: 963 EKLRSDVERLRMSEE 977

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	287
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.84
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.76
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.59
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.51
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.49
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.47
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.43
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.42
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.42
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.41
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.41
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.4
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.37
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.37
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.32
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.32
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.27
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.26
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.26
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.25
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.24
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.23
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.22
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.21
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.2
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.19
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.18
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.18
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.18
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.17
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.14
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.14
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.13
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.12
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.12
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.12
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.11
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.09
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.08
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	98.08
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.07
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.07
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.05
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.03
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.01
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.99
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.99
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	97.99
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.97
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	97.97
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.95
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.95
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	97.94
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	97.92
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.9
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	97.89
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.88
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.88
2gw1_A	514	Mitochondrial precursor proteins import receptor;	97.87
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.86
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.81
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	97.79
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	97.79
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	97.76
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	97.76
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	97.71
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	97.71
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	97.7
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	97.69
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	97.69
3u4t_A	272	TPR repeat-containing protein; structural genomics	97.68
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	97.68
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.68
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.67
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	97.66
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	97.65
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.65
3u4t_A	272	TPR repeat-containing protein; structural genomics	97.63
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.62
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.62
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	97.62
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	97.62
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	97.6
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	97.6
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	97.59
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	97.59
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	97.57
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.56
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.54
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	97.54
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	97.54
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.52
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	97.51
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	97.51
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	97.5
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.48
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	97.48
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	97.47
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	97.45
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.45
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	97.44
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	97.44
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	97.44
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	97.42
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	97.41
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.41
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.38
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	97.37
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.37
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	97.34
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	97.33
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	97.32
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	97.31
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.31
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	97.29
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	97.28
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.26
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.26
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	97.25
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.22
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	97.21
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	97.2
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.19
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.18
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	97.17
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	97.15
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.15
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	97.13
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.09
2gw1_A	514	Mitochondrial precursor proteins import receptor;	97.07
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	97.06
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	97.06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	97.04
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	97.03
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	97.03
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	97.02
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	97.01
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	96.97
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	96.97
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	96.97
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	96.96
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	96.93
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.92
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	96.9
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	96.88
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	96.87
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	96.86
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	96.86
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	96.85
2l6j_A	111	TPR repeat-containing protein associated with HSP;	96.82
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	96.81
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	96.81
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	96.78
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	96.78
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	96.7
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	96.67
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	96.62
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.61
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	96.51
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	96.5
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	96.5
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	96.48
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	96.47
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	96.46
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	96.45
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	96.36
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	96.35
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	96.32
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	96.29
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	96.22
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.22
2kat_A	115	Uncharacterized protein; NESG, structure, structur	96.22
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	96.21
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.16
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.11
1klx_A	138	Cysteine rich protein B; structural genomics, heli	96.1
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.07
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	95.86
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	95.8
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	95.78
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	95.75
4g1t_A	472	Interferon-induced protein with tetratricopeptide	95.71
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	95.67
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	95.62
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	95.61
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	95.48
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	95.34
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	95.23
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	95.11
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	94.96
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	94.83
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	94.83
4g1t_A	472	Interferon-induced protein with tetratricopeptide	94.59
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	94.41
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	93.68
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	93.24
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	92.98
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	92.95
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	92.4
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	92.14
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	91.99
1klx_A	138	Cysteine rich protein B; structural genomics, heli	90.38
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	90.13
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	88.39
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	87.9
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	87.87
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	87.63
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	87.06
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	86.91
2cfu_A	658	SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1	86.84
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	85.62
2p58_C	116	Putative type III secretion protein YSCG; type III	82.63
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	82.52
2xrh_A	100	Protein HP0721; unknown function; 1.50A {Helicobac	82.35
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	81.23
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	81.22
2ijq_A	161	Hypothetical protein; structural genomics, PSI, pr	80.31

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.84  E-value=3.9e-08  Score=79.32  Aligned_cols=82  Identities=7%  Similarity=0.010  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD  247 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKq  247 (287)
                      +...+..|...+..|+|.+||..|++++...|.+..    +.+.|+.+|...|+.++|+..|++.....|++.+++.|+.
T Consensus        70 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~----~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~~~~~A~~  145 (151)
T 3gyz_A           70 VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYT----PVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQS  145 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            455677899999999999999999999998876654    9999999999999999999999999989999999999999


Q ss_pred             HHHHhc
Q 023077          248 LRYILQ  253 (287)
Q Consensus       248 LLyILE  253 (287)
                      +|..|+
T Consensus       146 ll~~l~  151 (151)
T 3gyz_A          146 YLDAIQ  151 (151)
T ss_dssp             HHHHHC
T ss_pred             HHHhhC
Confidence            999874

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.76  E-value=1.4e-07  Score=68.29  Aligned_cols=85  Identities=12%  Similarity=0.156  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 023077          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADL  248 (287)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqL  248 (287)
                      ...+..|...+..|+|..|+..|+.++...|.+ +....+.++++.+|...|+.++|+..|+.+...+|+......|...
T Consensus        40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~  118 (129)
T 2xev_A           40 NALYWLGESYYATRNFQLAEAQFRDLVSRYPTH-DKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQER  118 (129)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            457888999999999999999999999976644 3346799999999999999999999999999999999999999888


Q ss_pred             HHHhcC
Q 023077          249 RYILQA  254 (287)
Q Consensus       249 LyILEA  254 (287)
                      |..|..
T Consensus       119 l~~l~~  124 (129)
T 2xev_A          119 LQSIRL  124 (129)
T ss_dssp             HHHHC-
T ss_pred             HHHHHh
Confidence            877754

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.59  E-value=1.1e-06  Score=61.72  Aligned_cols=69  Identities=17%  Similarity=0.141  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      .+...+..|...+..|+|.+|++.|++++...|.+    ..+.+.++.+|...|+.++|+..|++....+|+.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN----PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            35567889999999999999999999999987665    4689999999999999999999999999788874

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.51  E-value=7.2e-07  Score=72.82  Aligned_cols=73  Identities=19%  Similarity=0.193  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI  241 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV  241 (287)
                      +...|..|...+.+|+|.+||..|+.++...| .++....++++|+.+|...|+.++||..|+++++.+|+...
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~   76 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN   76 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence            56789999999999999999999999998655 45556789999999999999999999999999989998653

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.49  E-value=1.7e-06  Score=62.63  Aligned_cols=69  Identities=20%  Similarity=0.365  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      ..|..|...+..|+|..|+..|+.++...|. +.....+.++++.+|...|+.++|+..|+.+...+|+.
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~   72 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH   72 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC
Confidence            4688999999999999999999999997664 45556799999999999999999999999999889985

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.47  E-value=7.4e-07  Score=65.02  Aligned_cols=81  Identities=19%  Similarity=0.160  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCHHHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES---NHPSKNIRRQ  244 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~---~HPd~qVRqQ  244 (287)
                      +...+..|...+..|+|.+|+.+|++++...|.+..    +.+.|+.+|...|+.++|+..|++...   .+++......
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~   82 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVG----TYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE   82 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence            345788999999999999999999999998776554    999999999999999999999998763   3566666666


Q ss_pred             HHHHHHHh
Q 023077          245 AADLRYIL  252 (287)
Q Consensus       245 AKqLLyIL  252 (287)
                      ...+|..+
T Consensus        83 l~~~l~~~   90 (100)
T 3ma5_A           83 LQDAKLKA   90 (100)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHc
Confidence            66666554

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.43  E-value=2.2e-06  Score=66.96  Aligned_cols=83  Identities=10%  Similarity=0.051  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----HHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS----KNIRR  243 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd----~qVRq  243 (287)
                      +...+..|...+..|+|.+|+..|+.++...|.+.    .+.+.|+.+|...|+.++|+..|++.....|+    ..++.
T Consensus        55 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  130 (148)
T 2vgx_A           55 SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP----RFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELST  130 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc----hHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHH
Confidence            44567889999999999999999999999877655    48999999999999999999999999877776    67788


Q ss_pred             HHHHHHHHhcC
Q 023077          244 QAADLRYILQA  254 (287)
Q Consensus       244 QAKqLLyILEA  254 (287)
                      .|..+|..|..
T Consensus       131 ~~~~~l~~l~~  141 (148)
T 2vgx_A          131 RVSSMLEAIKL  141 (148)
T ss_dssp             HHHHHHHHC--
T ss_pred             HHHHHHHHHHh
Confidence            88888877654

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.42  E-value=1.5e-06  Score=63.73  Aligned_cols=67  Identities=15%  Similarity=0.078  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      +...+..|...+.+|+|.+|+..|++++...|.+.    .+.+.++.+|...|+.++|+..|++.+..+|+
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~   70 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA----RGYSNRAAALAKLMSFPEAIADCNKAIEKDPN   70 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence            44556666677777777777777777666555432    46666677777777777777777666655554

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.42  E-value=1.3e-06  Score=66.74  Aligned_cols=67  Identities=15%  Similarity=0.050  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      ++...+.|...|.+|+|.+||+.|++++...|.+.    .+.+.++.+|...|+.++||..|++.++-.|+
T Consensus        13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~   79 (126)
T 4gco_A           13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENA----ILYSNRAACLTKLMEFQRALDDCDTCIRLDSK   79 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh
Confidence            33444556666666666666666666666544432    35556666666666666666666665544444

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.41  E-value=2.4e-06  Score=70.14  Aligned_cols=72  Identities=25%  Similarity=0.343  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      .+...|..|...+.+|+|.+||..|++++...| .++....+.++|+.+|...|+.++|+..|+++++.+|+.
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~   85 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID   85 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC
Confidence            367789999999999999999999999999665 445567899999999999999999999999999888854

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.41  E-value=2e-06  Score=65.38  Aligned_cols=82  Identities=10%  Similarity=0.041  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC----CHHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP----SKNIRR  243 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP----d~qVRq  243 (287)
                      ....+..|...+..|+|..|+..|+.++...|.+..    +.+.|+.+|...|+.++|+..|++....+|    ...++.
T Consensus        52 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  127 (142)
T 2xcb_A           52 ARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPR----FPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAA  127 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence            445677899999999999999999999998776544    899999999999999999999999886777    456777


Q ss_pred             HHHHHHHHhc
Q 023077          244 QAADLRYILQ  253 (287)
Q Consensus       244 QAKqLLyILE  253 (287)
                      .+..+|..+.
T Consensus       128 ~~~~~l~~l~  137 (142)
T 2xcb_A          128 RAGAMLEAVT  137 (142)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777777654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.40  E-value=3.4e-06  Score=59.49  Aligned_cols=86  Identities=15%  Similarity=0.214  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCch---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFG---GEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ  244 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lG---GEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQ  244 (287)
                      +...+..|...+..|+|.+|+.+|+.++...+.+....   ..+.+.++.+|...|+.++|+..|+.....+|++.+...
T Consensus        38 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  117 (131)
T 1elr_A           38 MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKK  117 (131)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHH
Confidence            34567889999999999999999999998776432221   678999999999999999999999999988999999888


Q ss_pred             HHHHHHHhc
Q 023077          245 AADLRYILQ  253 (287)
Q Consensus       245 AKqLLyILE  253 (287)
                      ...+...+.
T Consensus       118 l~~~~~~~~  126 (131)
T 1elr_A          118 CQQAEKILK  126 (131)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888776664

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.37  E-value=4.4e-06  Score=62.52  Aligned_cols=79  Identities=23%  Similarity=0.222  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP---TFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ  244 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~---S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQ  244 (287)
                      +..-|..|..+|.+|+|.+||.+|+.|+...+..   ...-..+...|+.+|...|+.++|+.+++.+.+-.|+......
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            4567899999999999999999999999866433   2334588999999999999999999999999878887655433


Q ss_pred             HH
Q 023077          245 AA  246 (287)
Q Consensus       245 AK  246 (287)
                      ..
T Consensus        85 n~   86 (104)
T 2v5f_A           85 NL   86 (104)
T ss_dssp             HH
T ss_pred             hH
Confidence            33

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.37  E-value=3.6e-06  Score=69.07  Aligned_cols=84  Identities=21%  Similarity=0.252  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHc----------CChHHHHHHHHHHHHhCC
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEAN----------NRHADCIALYKQLESNHP  237 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~----------Gq~EkAIALCQ~L~~~HP  237 (287)
                      ++..|..|...+.+|+|..||..|+.++...| +++...++.++|+.+|...          |+.++|+..|++++..+|
T Consensus       148 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p  226 (261)
T 3qky_A          148 ARKQYEAARLYERRELYEAAAVTYEAVFDAYP-DTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP  226 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence            34478999999999999999999999998765 4555678999999999988          888999999999999999


Q ss_pred             CHHHHHHHHHHHHHh
Q 023077          238 SKNIRRQAADLRYIL  252 (287)
Q Consensus       238 d~qVRqQAKqLLyIL  252 (287)
                      +......|..+|..+
T Consensus       227 ~~~~~~~a~~~l~~~  241 (261)
T 3qky_A          227 DSPLLRTAEELYTRA  241 (261)
T ss_dssp             TCTHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHH
Confidence            998888888776654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.32  E-value=6.2e-06  Score=60.68  Aligned_cols=80  Identities=16%  Similarity=0.267  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH-HHHHHH
Q 023077          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK-NIRRQA  245 (287)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~-qVRqQA  245 (287)
                      .+...+..|...+..|+|.+|+..|++++...|.+    ..+.+.|+.+|...|+.++|+..|++....+|+. .+....
T Consensus        26 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  101 (117)
T 3k9i_A           26 LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH----QALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYK  101 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            35567889999999999999999999999987766    4699999999999999999999999988777754 454444


Q ss_pred             HHHHH
Q 023077          246 ADLRY  250 (287)
Q Consensus       246 KqLLy  250 (287)
                      +.+..
T Consensus       102 ~ai~~  106 (117)
T 3k9i_A          102 QAILF  106 (117)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.32  E-value=5.1e-06  Score=63.16  Aligned_cols=79  Identities=8%  Similarity=0.117  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC---chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF---FGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ  244 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~---lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQ  244 (287)
                      +...+..|...+..|+|..||+.|++++...|.+..   .-+.+...|+.+|.+.|+.++||..|++-...+|++++.+.
T Consensus        42 ~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~  121 (127)
T 4gcn_A           42 ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKK  121 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHHH
T ss_pred             HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHHH
Confidence            345667788888888888888888888876654432   23567777888888888888888888876667888887655


Q ss_pred             HH
Q 023077          245 AA  246 (287)
Q Consensus       245 AK  246 (287)
                      -+
T Consensus       122 l~  123 (127)
T 4gcn_A          122 VK  123 (127)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.27  E-value=5.3e-06  Score=58.36  Aligned_cols=66  Identities=15%  Similarity=0.165  Sum_probs=58.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHH-HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGE-IQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (287)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGE-AQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (287)
                      .|+.|...+..|+|.+|+..|+.++...|.+    .. +.+.++.+|...|+.++|+..|++....+|+..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~   69 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVG----KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP   69 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSST----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence            4788999999999999999999999976644    35 899999999999999999999999998888653

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.26  E-value=8.2e-06  Score=55.49  Aligned_cols=68  Identities=28%  Similarity=0.440  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      +...+..|...+..|+|.+|+.+|++++...|.+    ..+.+.|+.+|...|+.++|+..|++....+|+.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~   76 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN   76 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            4567888999999999999999999999976654    4689999999999999999999999998777754

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.26  E-value=5.4e-06  Score=63.80  Aligned_cols=69  Identities=13%  Similarity=-0.009  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (287)
                      +...+..|...+..|+|..|+..|+.++...|.+    ..+.+.|+.+|...|+.++|+..|++....+|+..
T Consensus        45 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  113 (164)
T 3sz7_A           45 PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY----SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGG  113 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSC
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCch
Confidence            4567788999999999999999999999987665    46899999999999999999999999887777653

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.25  E-value=5.2e-06  Score=57.52  Aligned_cols=66  Identities=17%  Similarity=0.123  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      ...+..|...+..|+|..|+.+|+.++...|.+    ..+.+.++.+|...|+.++|+.+|++....+|+
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~   70 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHN----HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD   70 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence            344555555555555555555555555544332    235555555555555555555555555544443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.24  E-value=6.7e-06  Score=62.45  Aligned_cols=68  Identities=10%  Similarity=0.120  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      +...|..|...+.+|+|.+|+.+|+.++...|.+.    .+.+.|+.+|...|+.++|+..|++.+...|+.
T Consensus        18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   85 (142)
T 2xcb_A           18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA----RYFLGLGACRQSLGLYEQALQSYSYGALMDINE   85 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            45678899999999999999999999999777554    489999999999999999999999999777753

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.23  E-value=2.8e-06  Score=64.63  Aligned_cols=67  Identities=18%  Similarity=0.224  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023077          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (287)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (287)
                      .|....+.|...|.+|+|.+||++|+++++..|.+    ..+...++.+|...|+.++||..|++.+.-.|
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~----~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~   73 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN----ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR   73 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCc
Confidence            34455678999999999999999999999987765    35889999999999999999999999874433

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.22  E-value=5.8e-06  Score=63.52  Aligned_cols=80  Identities=19%  Similarity=0.032  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH--HHHHHHH
Q 023077          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK--NIRRQAA  246 (287)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~--qVRqQAK  246 (287)
                      ...+..|...+..|+|..|+..++.++...|.+.    .+.+.++.+|...|+.++|+..|++.....|+.  .++..-.
T Consensus        64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~----~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~  139 (162)
T 3rkv_A           64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNE----KALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMK  139 (162)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcch----HHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            4566778888888999999999999988766553    588899999999999999999999888777764  3454444


Q ss_pred             HHHHHh
Q 023077          247 DLRYIL  252 (287)
Q Consensus       247 qLLyIL  252 (287)
                      .+...+
T Consensus       140 ~~~~~~  145 (162)
T 3rkv_A          140 IVTERR  145 (162)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444333

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.21  E-value=4.6e-06  Score=64.26  Aligned_cols=71  Identities=21%  Similarity=0.265  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (287)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (287)
                      +++...+..|...+.+|+|.+|++.|+++++..|.+.    .+.+.|+.+|...|+.++|+..|+.+...+|+..
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~   73 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNV----ETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSA   73 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhH
Confidence            4566788999999999999999999999999877653    5999999999999999999999999987888754

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.20  E-value=7e-06  Score=66.08  Aligned_cols=68  Identities=15%  Similarity=0.067  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      .+...|..|...+.+|+|.+|+..|++++...|.+..    +.+.|+.+|...|+.++||..|++.+.-.|+
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~----~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~  102 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVD----YIMGLAAIYQIKEQFQQAADLYAVAFALGKN  102 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence            3557899999999999999999999999998776544    8999999999999999999999999988887

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.19  E-value=6.9e-06  Score=62.12  Aligned_cols=64  Identities=16%  Similarity=0.086  Sum_probs=36.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      .|..|...+..|+|.+|+..|+.++...|.+.    .+.+.|+.+|...|+.++|+..|++.+...|+
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~   83 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPERE----EAWRSLGLTQAENEKDGLAIIALNHARMLDPK   83 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            34555555666666666666666665444332    35556666666666666666666555545553

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.18  E-value=5.9e-06  Score=60.02  Aligned_cols=81  Identities=16%  Similarity=0.207  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC---CHHHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP---SKNIRRQ  244 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP---d~qVRqQ  244 (287)
                      +...+..|...+..|+|.+|+..|+.++...|.+    ..+.+.|+.+|...|+.++|+..|++.....|   +......
T Consensus        19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   94 (115)
T 2kat_A           19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY----SVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKE   94 (115)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHH
Confidence            4467888999999999999999999999977654    45899999999999999999999999875554   4444444


Q ss_pred             HHHHHHHh
Q 023077          245 AADLRYIL  252 (287)
Q Consensus       245 AKqLLyIL  252 (287)
                      ...+|..|
T Consensus        95 l~~~l~~l  102 (115)
T 2kat_A           95 LQVFLRRL  102 (115)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            44444443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.18  E-value=9.9e-06  Score=63.04  Aligned_cols=80  Identities=16%  Similarity=0.284  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHH
Q 023077          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIRRQA  245 (287)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd-~qVRqQA  245 (287)
                      .....|..|...+..|+|..|+++|++++...|.+.    .+.+.|+.+|...|+.++|+..|++.++.+|+ +.+.-.-
T Consensus        30 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  105 (150)
T 4ga2_A           30 KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDP----KAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKI  105 (150)
T ss_dssp             HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            344568889999999999999999999999776653    59999999999999999999999998878886 4444444


Q ss_pred             HHHHH
Q 023077          246 ADLRY  250 (287)
Q Consensus       246 KqLLy  250 (287)
                      -.++.
T Consensus       106 a~~~~  110 (150)
T 4ga2_A          106 AELLC  110 (150)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.18  E-value=9.4e-06  Score=63.39  Aligned_cols=69  Identities=14%  Similarity=0.129  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      .+...+..|...+.+|+|.+|+..|+.++...|.+.    .+.+.|+.+|...|+.++|+..|++.+...|+.
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~   88 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDS----RFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE   88 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            355678899999999999999999999999777654    488999999999999999999999998777753

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.17  E-value=1.1e-05  Score=58.78  Aligned_cols=65  Identities=11%  Similarity=-0.059  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023077          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (287)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (287)
                      ...+..|...+..|+|..|+..|+.++...|.+    ..+.+.|+.+|...|+.++|+..|++.....|
T Consensus        44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p  108 (137)
T 3q49_B           44 VYYTNRALCYLKMQQPEQALADCRRALELDGQS----VKAHFFLGQCQLEMESYDEAIANLQRAYSLAK  108 (137)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHCh
Confidence            344445555555555555555555555544332    23555555555555555555555555543333

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.14  E-value=3.5e-05  Score=57.08  Aligned_cols=69  Identities=13%  Similarity=0.014  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (287)
                      +...+..|...+..|+|..|+.+|+.++...|.+    ..+.+.++.+|...|+.++|+.+|++....+|+..
T Consensus        47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~  115 (166)
T 1a17_A           47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY----IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK  115 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Confidence            4556777888899999999999999999876644    35889999999999999999999999887777543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.14  E-value=3.7e-05  Score=55.91  Aligned_cols=67  Identities=15%  Similarity=-0.039  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      ....+..|...+..|+|.+|+..|+.++...|.+    ..+.+.++.+|...|+.++|+.+|++....+|+
T Consensus        65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  131 (148)
T 2dba_A           65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD----VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK  131 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            4556666777777777777777777777765443    357777777777777777777777777666664

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.13  E-value=2e-05  Score=57.70  Aligned_cols=65  Identities=15%  Similarity=-0.038  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNH  236 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~H  236 (287)
                      +...+..|...+..|+|.+|+..|++++...|.+    ..+.+.++.+|...|+.++|+..|++....+
T Consensus        38 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           38 ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF----VRAYIRKATAQIAVKEYASALETLDAARTKD  102 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence            4567888999999999999999999999987765    4599999999999999999999999988677

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.12  E-value=4.9e-06  Score=67.48  Aligned_cols=69  Identities=23%  Similarity=0.439  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHH----------------HHHHHHHcCChHHHHHHHH
Q 023077          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIW----------------LAMAYEANNRHADCIALYK  230 (287)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmw----------------LAtAYqa~Gq~EkAIALCQ  230 (287)
                      .+...+..|..++..|+|.+|+..|++++...|.+    ..+.++                |+.+|...|+.++|+..|+
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~   78 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDR----TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK   78 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH----HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            35668899999999999999999999999976544    458888                9999999999999999999


Q ss_pred             HHHHhCCCH
Q 023077          231 QLESNHPSK  239 (287)
Q Consensus       231 ~L~~~HPd~  239 (287)
                      +.+..+|+.
T Consensus        79 ~al~~~p~~   87 (208)
T 3urz_A           79 ELLQKAPNN   87 (208)
T ss_dssp             HHHHHCTTC
T ss_pred             HHHHHCCCC
Confidence            999888864

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.12  E-value=1.9e-05  Score=55.61  Aligned_cols=68  Identities=21%  Similarity=0.176  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      ++...+..|...+..|+|.+|+.+|+.++...|.+    ..+.+.++.+|...|+.++|+.+|++....+|+
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~   70 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN----MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE   70 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc
Confidence            46678899999999999999999999999976654    468999999999999999999999998866553

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.12  E-value=2.4e-05  Score=59.67  Aligned_cols=68  Identities=15%  Similarity=0.042  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      +...+..|...+..|+|..||+.|++++...|.+.    .+.+.|+.+|...|+.++|+..|++..+-.|+.
T Consensus        47 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~  114 (126)
T 4gco_A           47 AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI----KGYIRKAACLVAMREWSKAQRAYEDALQVDPSN  114 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhh----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCC
Confidence            55678889999999999999999999999877654    599999999999999999999999999888864

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.11  E-value=1.7e-05  Score=54.59  Aligned_cols=68  Identities=12%  Similarity=0.136  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCCH
Q 023077          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEAN-NRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~-Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      ..+..|...+..|+|..|+++|++++...+.  ..-..+.+.|+.+|... |+.++|+..++.+...+|++
T Consensus        42 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           42 YWLMKGKALYNLERYEEAVDCYNYVINVIED--EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC--TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCcc--cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            3567778888888888888888888876554  11246788888888888 88888888888888777653

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.09  E-value=4.9e-05  Score=53.29  Aligned_cols=66  Identities=21%  Similarity=0.255  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      ...+..|...+..|+|.+|+..|+.++...|.+    ..+.+.++.+|...|+.++|+.+++.....+|+
T Consensus        47 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~  112 (131)
T 2vyi_A           47 VYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY----SKAYGRMGLALSSLNKHVEAVAYYKKALELDPD  112 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCcc
Confidence            344555666666777777777777766654433    346666667777777777777777666655553

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.08  E-value=7.6e-05  Score=54.23  Aligned_cols=71  Identities=13%  Similarity=0.040  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      +...+..|...+.+|+|..|+.+|+.++...|.+ ..-..+.+.++.+|...|+.++|+.+|++....+|+.
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~   98 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATP-QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD   98 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc-hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC
Confidence            4567889999999999999999999999876532 2235789999999999999999999999998788853

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=98.08  E-value=6.3e-05  Score=69.43  Aligned_cols=71  Identities=17%  Similarity=0.066  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHhcCCH-HHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHH
Q 023077          168 AQLMFELGQKAYGKGMY-GRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIR  242 (287)
Q Consensus       168 ae~~yeaG~aALerGdY-~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVR  242 (287)
                      +...+..|...+..|+| .+|+++|+++++..|.+    ..+.+.|+.+|...|+.++|+.+|++.....|++.+.
T Consensus       102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  173 (474)
T 4abn_A          102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL----VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSL  173 (474)
T ss_dssp             HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHH
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHH
Confidence            77889999999999999 99999999999987654    4599999999999999999999999999888885443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.07  E-value=2.7e-05  Score=53.62  Aligned_cols=64  Identities=17%  Similarity=0.267  Sum_probs=57.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      .+..|...+.+|+|.+|+..|+.++...+.+    ..+.+.++.+|...|+.++|+.+|++....+|+
T Consensus         9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~   72 (112)
T 2kck_A            9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEE----SKYWLMKGKALYNLERYEEAVDCYNYVINVIED   72 (112)
T ss_dssp             GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence            4567889999999999999999999977654    358999999999999999999999999977776

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.07  E-value=2.7e-05  Score=55.44  Aligned_cols=67  Identities=16%  Similarity=0.026  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      ....+..|...+..|+|.+|+.+|+.++...+.+    ..+.+.++.+|...|+.++|+.+|++....+|+
T Consensus        50 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~  116 (133)
T 2lni_A           50 AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF----IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS  116 (133)
T ss_dssp             HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC
Confidence            3445555666666666666666666666654432    346666666666666666666666666645554

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.05  E-value=4e-05  Score=60.70  Aligned_cols=80  Identities=16%  Similarity=0.010  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHH
Q 023077          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIRRQAAD  247 (287)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd-~qVRqQAKq  247 (287)
                      ...+..|...+..|+|.+|+..|+.++...|    .-..+.+.++.+|...|+.++|+..|++....+|+ +.+...-..
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  164 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK----NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL  164 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc----ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence            4556677788888888888888888888532    23578888888888888888888888887767764 445555444


Q ss_pred             HHHHh
Q 023077          248 LRYIL  252 (287)
Q Consensus       248 LLyIL  252 (287)
                      ++..+
T Consensus       165 ~~~~~  169 (198)
T 2fbn_A          165 CVNKL  169 (198)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44444

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.05  E-value=8.4e-06  Score=61.66  Aligned_cols=67  Identities=18%  Similarity=0.166  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      +...+..|...+..|+|.+|+..|++++...|.+.    .+.+.|+.+|...|+.++|+..|++....+|+
T Consensus        51 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~  117 (121)
T 1hxi_A           51 EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI----AVHAALAVSHTNEHNANAALASLRAWLLSQPQ  117 (121)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            55678899999999999999999999999877654    49999999999999999999999999866665

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.03  E-value=4e-05  Score=58.78  Aligned_cols=47  Identities=15%  Similarity=0.053  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYE  217 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYq  217 (287)
                      +...|..|...+..|+|..|+..|+.++...|.+..   .++..|..+..
T Consensus        97 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~---~~~~~l~~~~~  143 (162)
T 3rkv_A           97 EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAAS---VVAREMKIVTE  143 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHH---HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHH
Confidence            567788899999999999999999999998765542   24444544443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.01  E-value=0.00011  Score=51.46  Aligned_cols=70  Identities=17%  Similarity=0.141  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      ..+...+..|...+..|+|..|+.+|+.++...|.+    ..+.+.++.+|...|+.++|+.+|++....+|+.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~   79 (131)
T 2vyi_A           10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN----AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY   79 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC
Confidence            346678899999999999999999999999976654    4689999999999999999999999998788873

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.99  E-value=5.1e-05  Score=52.75  Aligned_cols=66  Identities=27%  Similarity=0.437  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      ...+..|...+..|+|.+|+.+|+.++...+.+    ..+.+.++.+|...|+.++|+.+|++....+|+
T Consensus        44 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  109 (125)
T 1na0_A           44 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN  109 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence            344556666677777777777777776654433    246666777777777777777777766655554

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.99  E-value=3.8e-05  Score=53.09  Aligned_cols=68  Identities=21%  Similarity=0.095  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      ....+..|...+..|+|..|+..|+.++...|.+    ..+.+.++.+|...|+.++|+..|++....+|+.
T Consensus        38 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~  105 (118)
T 1elw_A           38 HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW----GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN  105 (118)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence            4557788999999999999999999999976643    4689999999999999999999999998677754

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=97.99  E-value=1.9e-05  Score=60.76  Aligned_cols=67  Identities=21%  Similarity=0.276  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      ....+..|...+..|+|.+||+.|+++++..|.+    ..+.+.|+.+|...|+.++|+..|++.++.+|+
T Consensus       107 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  173 (184)
T 3vtx_A          107 ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF----IRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK  173 (184)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred             hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh----hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence            4456778999999999999999999999987655    358999999999999999999999998855553

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.97  E-value=2.9e-05  Score=59.70  Aligned_cols=69  Identities=22%  Similarity=0.246  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      ..+...+..|...+.+|+|.+|+.+|+.++...|.+    ..+.+.++.+|...|+.++|+..|++.+..+|+
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~   77 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN----PIYLSNRAAAYSASGQHEKAAEDAELATVVDPK   77 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            356678999999999999999999999999987765    459999999999999999999999999988887

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=97.97  E-value=3.5e-05  Score=61.48  Aligned_cols=65  Identities=17%  Similarity=0.132  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      ..+..|...+..|+|.+|+..|++++...|.    ...+.+.|+.+|...|+.++|+..|++..+.+|+
T Consensus        44 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~  108 (228)
T 4i17_A           44 TAYNCGVCADNIKKYKEAADYFDIAIKKNYN----LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG  108 (228)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc----hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence            4445566666666666666666666654333    2346666666666666666666666666655555

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.95  E-value=8.6e-05  Score=58.75  Aligned_cols=62  Identities=15%  Similarity=0.106  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHH-HHHHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCI-ALYKQLE  233 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAI-ALCQ~L~  233 (287)
                      ....+..|...+..|+|..|+..|+.++...|.+    ..++..|+.++...|+.+++. ..|+.+-
T Consensus       122 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~f  184 (198)
T 2fbn_A          122 VKALYKLGVANMYFGFLEEAKENLYKAASLNPNN----LDIRNSYELCVNKLKEARKKDKLTFGGMF  184 (198)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHHHHHHC----------
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4567888999999999999999999999987655    359999999999999988887 6666665

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.95  E-value=4.6e-05  Score=55.53  Aligned_cols=68  Identities=18%  Similarity=0.101  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      +...+..|...+..|+|..|+..|..++...|.+    ..+.+.++.+|...|+.++|+..|+..+..+|+.
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~   76 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALADCRRALELDGQS   76 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh
Confidence            5678899999999999999999999999987654    3599999999999999999999999999788873

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=97.94  E-value=3.7e-05  Score=62.29  Aligned_cols=66  Identities=15%  Similarity=0.139  Sum_probs=59.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (287)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (287)
                      .+..|...+..|+|.+|+..|+++++..|.+.    .+.+.|+.+|...|+.++|+..|++.+..+|+..
T Consensus        57 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~  122 (208)
T 3urz_A           57 ATELALAYKKNRNYDKAYLFYKELLQKAPNNV----DCLEACAEMQVCRGQEKDALRMYEKILQLEADNL  122 (208)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence            45589999999999999999999999877654    5999999999999999999999999998899743

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=97.92  E-value=4.6e-05  Score=62.07  Aligned_cols=77  Identities=12%  Similarity=0.097  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHH------------------cCChHHHHHHHH
Q 023077          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA------------------NNRHADCIALYK  230 (287)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa------------------~Gq~EkAIALCQ  230 (287)
                      ...|..|...+..|+|.+||..|+.++...|.+.. ...+.++++.+|..                  .|+.++|+..|+
T Consensus        42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~-~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  120 (225)
T 2yhc_A           42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFS  120 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT-HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc-HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHH
Confidence            45788899999999999999999999998776543 45688999999876                  689999999999


Q ss_pred             HHHHhCCCHHHHHHHH
Q 023077          231 QLESNHPSKNIRRQAA  246 (287)
Q Consensus       231 ~L~~~HPd~qVRqQAK  246 (287)
                      ++++.+|+......|.
T Consensus       121 ~~l~~~P~~~~a~~a~  136 (225)
T 2yhc_A          121 KLVRGYPNSQYTTDAT  136 (225)
T ss_dssp             HHHTTCTTCTTHHHHH
T ss_pred             HHHHHCcCChhHHHHH
Confidence            9999999976555444

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.90  E-value=0.00018  Score=49.98  Aligned_cols=68  Identities=28%  Similarity=0.440  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      +...+..|...+..|+|.+|+++|+.++...+.+    ..+.+.++.+|...|+.++|+.+|+.....+|+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~   76 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN   76 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc
Confidence            4557888999999999999999999999876543    3589999999999999999999999998777753

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=97.89  E-value=4e-05  Score=62.52  Aligned_cols=67  Identities=27%  Similarity=0.320  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      ...+..|...+.+|+|.+|+..|++++...|.+.    .+.+.|+.+|...|+.++|+..|++.+...|+.
T Consensus         6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~   72 (217)
T 2pl2_A            6 QNPLRLGVQLYALGRYDAALTLFERALKENPQDP----EALYWLARTQLKLGLVNPALENGKTLVARTPRY   72 (217)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            4567889999999999999999999999766553    599999999999999999999999999888874

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.88  E-value=0.00011  Score=52.31  Aligned_cols=67  Identities=16%  Similarity=0.209  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      ....+..|...+.+|+|..|+..|++++...+.+    ..+.+.++.+|...|+.++|+.+|++..+.+|+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~   82 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD----AKLYSNRAACYTKLLEFQLALKDCEECIQLEPT   82 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC----HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            4567889999999999999999999999876554    569999999999999999999999999877776

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.88  E-value=7.8e-05  Score=55.20  Aligned_cols=69  Identities=13%  Similarity=0.066  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      ..+...+..|...+.+|+|..|+.+|+.++...|.+    ..+.+.++.+|...|+.++|+.+|++....+|+
T Consensus        11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~   79 (166)
T 1a17_A           11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATRAIELDKK   79 (166)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            345556666666777777777777777766655443    346666677777777777777777666655554

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=97.87  E-value=7.4e-05  Score=64.97  Aligned_cols=70  Identities=14%  Similarity=0.158  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      ...++..+..|..++.+|+|.+|+..|+.++...| +    ..+.+.++.+|...|+.++|+..|++....+|+.
T Consensus         3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~   72 (514)
T 2gw1_A            3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-D----PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDY   72 (514)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCC
T ss_pred             chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-c----HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHH
Confidence            44566677777777777777777777777777654 2    4567777777777777777777777776666654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.86  E-value=4.4e-05  Score=65.38  Aligned_cols=70  Identities=20%  Similarity=0.219  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHH
Q 023077          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIR  242 (287)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVR  242 (287)
                      ...+..|..++.+|+|.+|++.|++++...|.+.    .+++.|+.+|...|+.++|+++|+++...+|++...
T Consensus       118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~  187 (287)
T 3qou_A          118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNG----EIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQ  187 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCH----HHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHH
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcch----hHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHH
Confidence            3468889999999999999999999999877664    599999999999999999999999998788877644

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.81  E-value=0.00031  Score=54.84  Aligned_cols=75  Identities=20%  Similarity=0.196  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC------------CchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT------------FFGGEIQIWLAMAYEANNRHADCIALYKQLESN  235 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S------------~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~  235 (287)
                      +...+..|...+..|+|..|++.|+.++...+.+.            +....+.+.++.+|...|+.++|+..|++....
T Consensus        71 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           71 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            45678889999999999999999999999877654            344589999999999999999999999999978


Q ss_pred             CCCHHHH
Q 023077          236 HPSKNIR  242 (287)
Q Consensus       236 HPd~qVR  242 (287)
                      +|+....
T Consensus       151 ~p~~~~~  157 (213)
T 1hh8_A          151 KSEPRHS  157 (213)
T ss_dssp             CCSGGGG
T ss_pred             Ccccccc
Confidence            8876543

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=97.79  E-value=2.3e-05  Score=61.39  Aligned_cols=68  Identities=6%  Similarity=0.057  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023077          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI  241 (287)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV  241 (287)
                      ..+..|...+..|+|.+|+..|++++...|.+.    .+++.|+.+|...|+.++|+.+|+++....|++.+
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~   75 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRG----DVKLAKADCLLETKQFELAQELLATIPLEYQDNSY   75 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSH----HHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHH
Confidence            467889999999999999999999999776654    49999999999999999999999999877775544

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=97.79  E-value=0.00037  Score=56.99  Aligned_cols=65  Identities=12%  Similarity=0.222  Sum_probs=36.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023077          173 ELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (287)
Q Consensus       173 eaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (287)
                      ..|...+..|+|.+|+..|+.++...|.+...-..+.+.++.+|...|+.++|+.+|++..+.+|
T Consensus       239 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  303 (359)
T 3ieg_A          239 ESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP  303 (359)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence            34555556666666666666666555544433334455555666666666666666666554455

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=97.76  E-value=0.00011  Score=60.17  Aligned_cols=66  Identities=9%  Similarity=0.043  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (287)
                      ....+..|...+..|+|..|+..|+.++...|.+.    .+.+.++.+|...|+.++|+.+|++..+..|
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  102 (359)
T 3ieg_A           37 YIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFT----AARLQRGHLLLKQGKLDEAEDDFKKVLKSNP  102 (359)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcc----hHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence            44566667777777777777777777777544332    4777777777777777777777777775555

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=97.76  E-value=5.7e-05  Score=66.50  Aligned_cols=70  Identities=14%  Similarity=0.203  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      ...+...+..|...+.+|+|..|+..|+.++...|.+.    .+.+.++.+|...|+.++|+.+|++....+|+
T Consensus        22 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~   91 (537)
T 3fp2_A           22 QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEP----VFYSNISACYISTGDLEKVIEFTTKALEIKPD   91 (537)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCc----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence            44566777888888888888888888888887665442    57788888888888888888888887766776

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=97.71  E-value=0.00031  Score=48.82  Aligned_cols=65  Identities=29%  Similarity=0.459  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      ..+..|...+..|+|..|+.+|+.++...+.+    ..+.+.++.+|...|+.++|+.+++......|+
T Consensus        71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           71 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRS----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            34455666666677777777777666654432    346666666777777777777776666544443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=97.71  E-value=0.00012  Score=58.30  Aligned_cols=69  Identities=9%  Similarity=0.031  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      +...+..|...+.+|+|.+|+..|++++...|....   .+.++++.+|...|+.++|+..|++....+|+.
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~   75 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS---VTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL   75 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc---HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch
Confidence            356889999999999999999999999998873333   588999999999999999999999999788874

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=97.70  E-value=0.00038  Score=55.74  Aligned_cols=66  Identities=15%  Similarity=0.045  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      +...+..|...+.+|+|.+|+.+|++++...+.+...-..+.+.|+.+|...|+.++|+.+|++..
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   70 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL   70 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            456778899999999999999999999987666555446788889999999999999999988754

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=97.69  E-value=0.00042  Score=53.17  Aligned_cols=61  Identities=20%  Similarity=0.135  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHc-CChHHHHHHHHHHH
Q 023077          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEAN-NRHADCIALYKQLE  233 (287)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~-Gq~EkAIALCQ~L~  233 (287)
                      ...+..|...+..|+|.+|+.+|+.++...|.+    ..+.+.++.+|... |+.++|+.+|+...
T Consensus        43 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~  104 (225)
T 2vq2_A           43 LAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS----AEINNNYGWFLCGRLNRPAESMAYFDKAL  104 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            344555666666666666666666666654432    23566666666666 66666666666666

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=97.69  E-value=0.00023  Score=56.73  Aligned_cols=69  Identities=14%  Similarity=0.125  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (287)
                      ....+..|...+..|+|..|+.+|+.++...|.+.    .+.+.|+.+|...|+.++|+.+|++....+|+..
T Consensus        77 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  145 (275)
T 1xnf_A           77 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN----YAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP  145 (275)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcccc----HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence            45667789999999999999999999999876654    5899999999999999999999999987888765

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=97.68  E-value=0.00014  Score=58.36  Aligned_cols=69  Identities=10%  Similarity=0.019  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      ..+..|...+..|+|.+|+..|+.++. .+.+...-..+.+.++.+|...|+.++|+..|++..+.+|+.
T Consensus        39 ~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~  107 (272)
T 3u4t_A           39 IYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR  107 (272)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc
Confidence            455666777777777777777777777 444455556667777777777777777777777777666543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=97.68  E-value=0.00018  Score=56.39  Aligned_cols=68  Identities=16%  Similarity=0.038  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      ..++..+..|...+.+|+|.+|+.+|+.++...  ..   ..+.+.++.+|...|+.++|+.+|++....+|+
T Consensus         3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~   70 (258)
T 3uq3_A            3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KD---ITYLNNRAAAEYEKGEYETAISTLNDAVEQGRE   70 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--cc---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence            357788999999999999999999999999977  33   369999999999999999999999999865553

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.68  E-value=0.00012  Score=62.64  Aligned_cols=68  Identities=12%  Similarity=-0.037  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      +...+..|...+..|+|..|+..|++++...|.+    ..+.+.|+.+|...|+.++|+..|++....+|+.
T Consensus        38 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           38 AVYYTNRALCYLKMQQPEQALADCRRALELDGQS----VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            5567778888999999999999999998865544    3588999999999999999999998877566644

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.67  E-value=0.00022  Score=55.64  Aligned_cols=67  Identities=10%  Similarity=-0.026  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      +...+..|...+..|+|..|+.+|+.++...|.+    ..+.+.++.+|...|+.++|+..|++....+|.
T Consensus        37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~  103 (213)
T 1hh8_A           37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL----AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG  103 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Confidence            3467888999999999999999999999976544    468999999999999999999999999866665

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=97.66  E-value=0.0002  Score=49.88  Aligned_cols=67  Identities=30%  Similarity=0.466  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      ....+..|...+..|+|..|+.+|+.++...+..    ..+.+.++.+|...|+.++|+.+++.....+|+
T Consensus        35 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  101 (136)
T 2fo7_A           35 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  101 (136)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc----hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence            4455667888888999999999999988865543    357888899999999999999999888866765

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=97.65  E-value=0.00025  Score=57.74  Aligned_cols=68  Identities=26%  Similarity=0.215  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (287)
                      +...+..|...+..|+|.+|++.|++++...  ..   ..+.+.|+.+|...|+.++|+..|++....+|+..
T Consensus       118 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~  185 (217)
T 2pl2_A          118 APLHLQRGLVYALLGERDKAEASLKQALALE--DT---PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDL  185 (217)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence            4556788999999999999999999999977  33   36999999999999999999999999998888654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.65  E-value=0.00035  Score=63.31  Aligned_cols=83  Identities=14%  Similarity=0.160  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHH
Q 023077          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIRRQ  244 (287)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd-~qVRqQ  244 (287)
                      ..+...+..|...+..|+|.+|+++++.++...|.+    ..+.+.++.+|...|+.++|+..|++..+..|+ +.+...
T Consensus       271 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~  346 (370)
T 1ihg_A          271 VALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN----TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAE  346 (370)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchh----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            346678899999999999999999999999976644    469999999999999999999999998878884 555555


Q ss_pred             HHHHHHHh
Q 023077          245 AADLRYIL  252 (287)
Q Consensus       245 AKqLLyIL  252 (287)
                      -..++..+
T Consensus       347 l~~~~~~~  354 (370)
T 1ihg_A          347 LLKVKQKI  354 (370)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55444433

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=97.63  E-value=0.00034  Score=56.08  Aligned_cols=66  Identities=11%  Similarity=0.008  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      ..+..|...+..|+|.+|+..|+.++...|.+.    .+...++.+|...|+.++|+..|++....+|+.
T Consensus        76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~  141 (272)
T 3u4t_A           76 DFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL----DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD  141 (272)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT----HHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH----HHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc
Confidence            367889999999999999999999999777654    489999999999999999999999988666654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.62  E-value=0.00028  Score=62.20  Aligned_cols=68  Identities=16%  Similarity=0.006  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      +...+..|...+..|+|.+|+..|++++...|.+    ..+.+.++.+|...|+.++|+..|++....+|+.
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~  263 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNN----EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN  263 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence            3667788888999999999999999999977654    3589999999999999999999999988788864

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.62  E-value=0.00063  Score=59.98  Aligned_cols=63  Identities=14%  Similarity=0.139  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHH-HHHHHHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADC-IALYKQLES  234 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkA-IALCQ~L~~  234 (287)
                      +...|..|...+..|+|.+|+..|++++...|.+.    .+...|+.+|...|+.++| ..+|+.+..
T Consensus       230 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~----~a~~~l~~~~~~~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          230 EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK----AAKTQLAVCQQRIRRQLAREKKLYANMFE  293 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678889999999999999999999999877654    5999999999999999999 678888873

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=97.62  E-value=0.00075  Score=52.87  Aligned_cols=68  Identities=15%  Similarity=0.077  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      .+...+..|...+..|+|.+|+..|+.++...|.+    ..+.+.++.+|...|+.++|+..|++....+|+
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~  205 (258)
T 3uq3_A          138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED----ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN  205 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH
Confidence            35567778888899999999999999998876654    358888999999999999999999988877776

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=97.62  E-value=0.00038  Score=55.49  Aligned_cols=67  Identities=21%  Similarity=0.249  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      +...+..|...+..|+|..|+.+|+.++...|.+    ..+.+.|+.+|...|+.++|+.+|++....+|+
T Consensus        43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~  109 (275)
T 1xnf_A           43 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDM----PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT  109 (275)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc
Confidence            4445556666666666666666666666654432    235666666666666666666666666655553

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=97.60  E-value=0.00037  Score=51.48  Aligned_cols=59  Identities=27%  Similarity=0.483  Sum_probs=31.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      .+..|...+..|+|..|+.+|+.++...+.+    ..+.+.++.+|...|+.++|+.+|++..
T Consensus       113 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~  171 (186)
T 3as5_A          113 RFRLGVALDNLGRFDEAIDSFKIALGLRPNE----GKVHRAIAFSYEQMGRHEEALPHFKKAN  171 (186)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHhcCccc----hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3444555555555555555555555543322    2455555555555555555555555554

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=97.60  E-value=0.00069  Score=56.77  Aligned_cols=66  Identities=15%  Similarity=0.045  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      |...+..|...+.+|+|..|+.+|+.++...+.+...-..+.+.|+.+|...|+.++|+.+|++..
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   74 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL   74 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            556678888889999999999999998887666555446788888889999999999988888754

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=97.59  E-value=0.00031  Score=59.43  Aligned_cols=68  Identities=21%  Similarity=0.186  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      +...+..|...+..|+|.+|+..|+.++...|.+    ..+.+.|+.+|...|+.++|+.+|++..+.+|+.
T Consensus        99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  166 (365)
T 4eqf_A           99 AEAWQFLGITQAENENEQAAIVALQRCLELQPNN----LKALMALAVSYTNTSHQQDACEALKNWIKQNPKY  166 (365)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccc
Confidence            5567778888888999999999999988876544    4588888999999999999999998888666543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=97.59  E-value=0.00035  Score=53.72  Aligned_cols=69  Identities=16%  Similarity=0.154  Sum_probs=59.1

Q ss_pred             HHHHHHHHHH-HHhcCCH--HHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077          168 AQLMFELGQK-AYGKGMY--GRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (287)
Q Consensus       168 ae~~yeaG~a-ALerGdY--~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (287)
                      ....+..|.. .+..|+|  ..|+..|+.++...|.+    ..+.+.|+.+|...|+.++|+..|+++...+|+..
T Consensus        78 ~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  149 (177)
T 2e2e_A           78 AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE----ITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI  149 (177)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred             HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence            3456777888 7799999  99999999999977654    35899999999999999999999999987888754

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=97.57  E-value=0.00027  Score=60.37  Aligned_cols=69  Identities=13%  Similarity=0.019  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      ...+...+..|...+.+|+|.+|+.+|+.++...+.+...-..+.+.|+.+|...|+.++|+.+|++..
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  113 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL  113 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            345667788888999999999999999999887666555455788888999999999999999888766

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.56  E-value=0.0029  Score=45.32  Aligned_cols=67  Identities=13%  Similarity=0.048  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--CCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP--TFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~--S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      .+...+..|...+.+|+|..|+.+|+.++...+..  ...-..+.+.++.+|...|+.++|+.+|++..
T Consensus        48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  116 (164)
T 3ro3_A           48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL  116 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            35567778888889999999999999888765532  22235677888888999999999998888765

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.54  E-value=0.00027  Score=59.76  Aligned_cols=71  Identities=17%  Similarity=0.046  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC--------CchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023077          165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT--------FFGGEIQIWLAMAYEANNRHADCIALYKQLESN  235 (287)
Q Consensus       165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S--------~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~  235 (287)
                      .+++...+..|...+..|+|..||+.+.+++...|.+.        +.-..+...++.||...|+.++||..|...+.-
T Consensus         8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l   86 (159)
T 2hr2_A            8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY   86 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            34677889999999999999999999999999888721        112338899999999999999999999999977

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=97.54  E-value=0.00063  Score=52.19  Aligned_cols=65  Identities=18%  Similarity=0.146  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023077          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (287)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (287)
                      ...+..|...+..|+|..|+.+|+.++...|.+    ..+.+.|+.+|...|+.++|+.+|++....+|
T Consensus       114 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  178 (225)
T 2vq2_A          114 IANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF----PPAFKELARTKMLAGQLGDADYYFKKYQSRVE  178 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            445666777777788888888887777765543    35777777778788888888887777776666

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=97.54  E-value=0.0005  Score=50.78  Aligned_cols=68  Identities=18%  Similarity=0.193  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      ....+..|...+..|+|.+|+++|+.++...|.+    ..+.+.++.+|...|+.++|+.+|++....+|+.
T Consensus        76 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~  143 (186)
T 3as5_A           76 VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN----FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE  143 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh----HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc
Confidence            4456677888888999999999999988876543    3588889999999999999999999888677653

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.52  E-value=0.00037  Score=64.32  Aligned_cols=68  Identities=13%  Similarity=0.062  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      +...+..|...+..|+|.+|+..|.+++...|.+    ..+.+.++.||...|+.++|+..|++....+|+.
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~  384 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN----EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN  384 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence            3566678888999999999999999999987765    3589999999999999999999999988666654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=97.51  E-value=0.00034  Score=58.46  Aligned_cols=68  Identities=15%  Similarity=0.135  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      ....+..|...+..|+|.+|+..|+.++...|.+    ..+.+.|+.+|...|+.++|+.+|++....+|+.
T Consensus        98 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  165 (368)
T 1fch_A           98 MEAWQYLGTTQAENEQELLAISALRRCLELKPDN----QTALMALAVSFTNESLQRQACEILRDWLRYTPAY  165 (368)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence            3455666777777777777777777777765443    3477777777777777777777777777556554

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=97.51  E-value=0.00042  Score=53.29  Aligned_cols=68  Identities=18%  Similarity=0.164  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHH-HHHcCCh--HHHHHHHHHHHHhCCCH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMA-YEANNRH--ADCIALYKQLESNHPSK  239 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtA-Yqa~Gq~--EkAIALCQ~L~~~HPd~  239 (287)
                      ....+..|...+..|+|..|+.+|+.++...|.+    ..+.+.++.+ |...|+.  ++|+.+|++....+|+.
T Consensus        44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~  114 (177)
T 2e2e_A           44 SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN----AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE  114 (177)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC----HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc
Confidence            3457788999999999999999999999987765    4589999999 8899998  99999999999788874

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=97.50  E-value=0.00029  Score=55.10  Aligned_cols=66  Identities=14%  Similarity=0.251  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      ...+..|...+..|+|..|+.+|+.++...+.+    ..+.+.++.+|...|+.++|+.+|++....+|+
T Consensus       126 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  191 (243)
T 2q7f_A          126 DLFYMLGTVLVKLEQPKLALPYLQRAVELNEND----TEARFQFGMCLANEGMLDEALSQFAAVTEQDPG  191 (243)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            345556666666666666666666666654432    236666666666666666666666666655554

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.48  E-value=0.00047  Score=51.92  Aligned_cols=66  Identities=15%  Similarity=0.052  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          169 QLMFELGQKAYGKGM---YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       169 e~~yeaG~aALerGd---Y~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      ...+..|...+-.++   ..+|+.+|++++...|.+.+    +.+.|+.+|...|+.++||..++.+....|.
T Consensus         7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~r----A~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEA----ALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            445667777765555   89999999999998777766    9999999999999999999999999977776

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=97.48  E-value=0.00052  Score=55.82  Aligned_cols=55  Identities=4%  Similarity=-0.074  Sum_probs=25.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcC-ChHHHHHHHHHHH
Q 023077          175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN-RHADCIALYKQLE  233 (287)
Q Consensus       175 G~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~G-q~EkAIALCQ~L~  233 (287)
                      +...+..|+|..|+.+|+.++...|.+.    .+.+.++.+|...| +.++|+.+|++..
T Consensus        63 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~A~~~~~~a~  118 (330)
T 3hym_B           63 IGTLVELNKANELFYLSHKLVDLYPSNP----VSWFAVGCYYLMVGHKNEHARRYLSKAT  118 (330)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTST----HHHHHHHHHHHHSCSCHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhCcCCH----HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            3444444444444444444444333222    24445555555555 4555555555544

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=97.47  E-value=0.00034  Score=55.63  Aligned_cols=63  Identities=13%  Similarity=-0.113  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES  234 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~  234 (287)
                      ....+..|...+..|+|.+|+++|+.++...+.+    ..+.+.++.+|...|+.++|+.+|+++..
T Consensus        71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~  133 (252)
T 2ho1_A           71 ADAHAALAVVFQTEMEPKLADEEYRKALASDSRN----ARVLNNYGGFLYEQKRYEEAYQRLLEASQ  133 (252)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc----HHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence            3445566777777777777777777777765433    34677777777777777777777777763

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=97.45  E-value=0.00094  Score=57.56  Aligned_cols=69  Identities=10%  Similarity=0.055  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (287)
                      +...+..|...+..|+|..|+..|++++...|.+    ..+.+.|+.+|...|+.++|+.+|++.....|+..
T Consensus        60 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  128 (450)
T 2y4t_A           60 YIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF----TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEN  128 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Confidence            4556777888899999999999999999876554    46888999999999999999999999987777764

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.45  E-value=0.00028  Score=63.95  Aligned_cols=75  Identities=8%  Similarity=-0.010  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------------CCCchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 023077          164 RRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPR------------PTFFGGEIQIWLAMAYEANNRHADCIALYKQ  231 (287)
Q Consensus       164 ~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~------------~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~  231 (287)
                      ....+...+..|..++.+|+|.+|+..|++++...+.            ..+.-..+.+.|+.+|...|+.++|+..|++
T Consensus       219 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~  298 (370)
T 1ihg_A          219 ILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE  298 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            3445666888999999999999999999999985432            2334457899999999999999999999999


Q ss_pred             HHHhCCC
Q 023077          232 LESNHPS  238 (287)
Q Consensus       232 L~~~HPd  238 (287)
                      ....+|+
T Consensus       299 al~~~p~  305 (370)
T 1ihg_A          299 ALEIDPS  305 (370)
T ss_dssp             HHTTCTT
T ss_pred             HHHhCch
Confidence            9977775

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=97.44  E-value=0.0019  Score=51.27  Aligned_cols=67  Identities=12%  Similarity=0.122  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      +...+..|...+..|+|.+|+++|+.++...+.+    ..+.+.|+.+|...|+.++|+.+|++....+|+
T Consensus       141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  207 (252)
T 2ho1_A          141 SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ----PSVALEMADLLYKEREYVPARQYYDLFAQGGGQ  207 (252)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            3445566777777777777777777777755433    356777777777777777777777777655554

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=97.44  E-value=0.00054  Score=55.64  Aligned_cols=67  Identities=18%  Similarity=0.146  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      +...+..|...+..|+|.+|+..|+.++...|.+    ..+.+.++.+|...|+.++|+.+|+++...+|+
T Consensus        55 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  121 (327)
T 3cv0_A           55 EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD----IAVHAALAVSHTNEHNANAALASLRAWLLSQPQ  121 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence            3455566777777777777777777777754433    346777777777777777777777777655554

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=97.44  E-value=0.00062  Score=58.67  Aligned_cols=64  Identities=14%  Similarity=0.014  Sum_probs=37.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      .+..|...+..|+|.+|+.+|+.++...|.+    ..+.+.|+.+|...|+.++|+..|++..+.+|+
T Consensus       298 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~  361 (450)
T 2y4t_A          298 KERICHCFSKDEKPVEAIRVCSEVLQMEPDN----VNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN  361 (450)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence            3444555566666666666666666544332    246666666666666666666666666655554

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=97.42  E-value=0.0012  Score=55.72  Aligned_cols=67  Identities=22%  Similarity=0.307  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      +...+..|...+..|+|.+|+..|+.++...|.+    ..+.+.|+.+|...|+.++|+..|++....+|+
T Consensus       213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  279 (365)
T 4eqf_A          213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED----YSLWNRLGATLANGDRSEEAVEAYTRALEIQPG  279 (365)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            4456777888899999999999999999976654    458899999999999999999999998878887

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=97.41  E-value=0.00082  Score=52.55  Aligned_cols=67  Identities=16%  Similarity=0.150  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      ....+..|...+..|+|..|+++|++++...+.+    ..+.+.++.+|...|+.++|+.+|++....+|+
T Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~  157 (243)
T 2q7f_A           91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN----GDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN  157 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS----HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence            3456777888999999999999999999977654    458999999999999999999999999877775

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.41  E-value=0.0012  Score=47.25  Aligned_cols=67  Identities=22%  Similarity=0.199  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--CCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP--TFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~--S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      .+...+..|...+..|+|.+|+++|+.++...+..  ...-..+...|+.+|...|+.++|+..|++..
T Consensus        88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  156 (164)
T 3ro3_A           88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL  156 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            35667888999999999999999999999765422  33446788999999999999999999998876

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.38  E-value=0.00032  Score=62.03  Aligned_cols=74  Identities=12%  Similarity=0.108  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC---CchH----------HHHHHHHHHHHHcCChHHHHHHHHH
Q 023077          165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT---FFGG----------EIQIWLAMAYEANNRHADCIALYKQ  231 (287)
Q Consensus       165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S---~lGG----------EAQmwLAtAYqa~Gq~EkAIALCQ~  231 (287)
                      ...+...+..|...+.+|+|..|+..|+.++...+.+.   ..|-          .+.+.|+.+|...|+.++|+..|++
T Consensus       176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~  255 (338)
T 2if4_A          176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI  255 (338)
T ss_dssp             HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            34456677888888889999999998888888766432   1111          3778888888888888888888888


Q ss_pred             HHHhCCC
Q 023077          232 LESNHPS  238 (287)
Q Consensus       232 L~~~HPd  238 (287)
                      ....+|+
T Consensus       256 al~~~p~  262 (338)
T 2if4_A          256 VLTEEEK  262 (338)
T ss_dssp             HHHHCTT
T ss_pred             HHHhCCC
Confidence            8767774

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=97.37  E-value=0.0015  Score=52.95  Aligned_cols=66  Identities=17%  Similarity=0.080  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      ...+..|...+..|+|.+|+..|+.++...|.+    ..+.+.|+.+|...|+.++|+..|++....+|+
T Consensus       207 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  272 (327)
T 3cv0_A          207 QLWNKLGATLANGNRPQEALDAYNRALDINPGY----VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG  272 (327)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence            445667777788888888888888887765543    347778888888888888888888877767776

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.37  E-value=0.0012  Score=60.97  Aligned_cols=65  Identities=12%  Similarity=0.203  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHH-HHHHHHHHhC
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCI-ALYKQLESNH  236 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAI-ALCQ~L~~~H  236 (287)
                      +...|..|...+..|+|.+|+..|+++++..|.+..    ++..|+.+|...|+.++|. .+|+.+..+.
T Consensus       351 ~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~----a~~~l~~~~~~~~~~~~a~~~~~~~~f~k~  416 (457)
T 1kt0_A          351 EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA----ARLQISMCQKKAKEHNERDRRIYANMFKKF  416 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----C----HHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            556888999999999999999999999998776665    8999999999999998876 5677766333

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=97.34  E-value=0.0021  Score=49.22  Aligned_cols=89  Identities=10%  Similarity=-0.052  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCc--hHHHHHHHHHHHHHcCChHHHHHHHHHHH---HhCCCHH
Q 023077          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF--GGEIQIWLAMAYEANNRHADCIALYKQLE---SNHPSKN  240 (287)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~l--GGEAQmwLAtAYqa~Gq~EkAIALCQ~L~---~~HPd~q  240 (287)
                      ..+...+..|...+..|+|.+|+.+|+.++...+.....  -..+...|+.+|...|+.++|+..+++..   ..++++.
T Consensus       105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  184 (203)
T 3gw4_A          105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSE  184 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHH
Confidence            345667888999999999999999999999765533333  24556899999999999999999987644   3566776


Q ss_pred             HHHHHHHHHHHhcC
Q 023077          241 IRRQAADLRYILQA  254 (287)
Q Consensus       241 VRqQAKqLLyILEA  254 (287)
                      ....+...+..+..
T Consensus       185 ~~~~~~~~~~~~~~  198 (203)
T 3gw4_A          185 AVNELMTRLNGLEH  198 (203)
T ss_dssp             HHHHHHHHHHTTCC
T ss_pred             HHHHHHhcccchhh
Confidence            66666666665543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=97.33  E-value=0.00095  Score=55.72  Aligned_cols=68  Identities=19%  Similarity=0.222  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      +...+..|...+..|+|.+|+.+|+.++...|.+    ..+.+.|+.+|...|+.++|+.+|++....+|+.
T Consensus        64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  131 (368)
T 1fch_A           64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH----MEAWQYLGTTQAENEQELLAISALRRCLELKPDN  131 (368)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCC
Confidence            3446788999999999999999999999976544    4699999999999999999999999998788753

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=97.32  E-value=0.0012  Score=53.59  Aligned_cols=72  Identities=13%  Similarity=0.166  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHH
Q 023077          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIRRQ  244 (287)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd-~qVRqQ  244 (287)
                      ...+..|...+..|+|.+|+.+|+.++...|.+.    .+.+.|+.+|...|+.++|+..|++.....|+ +.+..+
T Consensus       237 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  309 (330)
T 3hym_B          237 PLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNA----STYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTM  309 (330)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCS----HHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccch----HHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHH
Confidence            3567788999999999999999999999876543    59999999999999999999999999877774 444333

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=97.31  E-value=0.0012  Score=51.06  Aligned_cols=72  Identities=11%  Similarity=0.085  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHH-HHHHHHhCCCH-HHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIAL-YKQLESNHPSK-NIRR  243 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIAL-CQ~L~~~HPd~-qVRq  243 (287)
                      +...+..|...+..|+|..|+..|+++++..|.+.    .+.+.|+.+|...|+.++|+.. +++.++-+|+. .+..
T Consensus        65 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~  138 (150)
T 4ga2_A           65 PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQK----DLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYK  138 (150)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHH
Confidence            56788889999999999999999999999877654    4999999999999999877765 57666578864 4433

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.31  E-value=0.0002  Score=52.55  Aligned_cols=59  Identities=14%  Similarity=0.064  Sum_probs=46.6

Q ss_pred             hcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          180 GKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       180 erGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      ..|+|.+||.+|+++++.. ...+.-..+.+.|+.+|...|+.++|+..|++.+..+|+.
T Consensus         2 ~~g~~~~A~~~~~~al~~~-~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   60 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASG-LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH   60 (117)
T ss_dssp             -----CCCHHHHHHHHSSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             CCCcHHHHHHHHHHHHHcC-CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            4699999999999999853 2234456799999999999999999999999999888874

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=97.29  E-value=0.00067  Score=67.95  Aligned_cols=68  Identities=13%  Similarity=0.113  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      +...+..|...+.+|+|.+|++.|++|++..|.+    .++.+.|+.+|...|+.++|+..|++.++-+|+.
T Consensus        43 ~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~----~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~  110 (723)
T 4gyw_A           43 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF----ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF  110 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            5566677888888888888888888888765544    3478888888888888888888888877667664

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=97.28  E-value=0.0012  Score=51.48  Aligned_cols=64  Identities=19%  Similarity=0.124  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      ....+..|...+..|+|.+|+..|+.++...|....  ..++..|+.+|...|+.++|+..|+...
T Consensus       108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~a~~~l~~~~~~~g~~~~A~~~y~~al  171 (176)
T 2r5s_A          108 FELACELAVQYNQVGRDEEALELLWNILKVNLGAQD--GEVKKTFMDILSALGQGNAIASKYRRQL  171 (176)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTT--THHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccCh--HHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            456777888888889999999999988887665432  2578888888888999988988888765

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.26  E-value=0.00052  Score=60.72  Aligned_cols=66  Identities=11%  Similarity=0.026  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      ...+..|...+..|+|.+|+.+|+.++...|.+    ..+.+.++.||...|+.++|+..|++.....|+
T Consensus       231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~  296 (338)
T 2if4_A          231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKN----PKALFRRGKAKAELGQMDSARDDFRKAQKYAPD  296 (338)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHTTC----
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            357889999999999999999999999987654    359999999999999999999999998855665

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.26  E-value=0.00099  Score=56.97  Aligned_cols=74  Identities=12%  Similarity=0.109  Sum_probs=51.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH---HHHHHHHHHHHH
Q 023077          175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK---NIRRQAADLRYI  251 (287)
Q Consensus       175 G~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~---qVRqQAKqLLyI  251 (287)
                      +...+.+|++..|++.|+.++...|.+    ..+++.|+.+|...|+.++|+..|+.+...+|+.   .++..--.++..
T Consensus       192 ~~~l~~~~~~~~a~~~l~~al~~~P~~----~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~  267 (287)
T 3qou_A          192 QIELLXQAADTPEIQQLQQQVAENPED----AALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA  267 (287)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH
T ss_pred             HHHHHhhcccCccHHHHHHHHhcCCcc----HHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence            344445555555666666666655443    3599999999999999999999999999888874   455544444444


Q ss_pred             h
Q 023077          252 L  252 (287)
Q Consensus       252 L  252 (287)
                      +
T Consensus       268 ~  268 (287)
T 3qou_A          268 L  268 (287)
T ss_dssp             H
T ss_pred             c
Confidence            3

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=97.25  E-value=0.00072  Score=57.82  Aligned_cols=67  Identities=25%  Similarity=0.242  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      +...+..|...+.+|+|.+|++.|++++...|.+.    .+.+.|+.+|...|+.++|+..|++....+|+
T Consensus        67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  133 (388)
T 1w3b_A           67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFI----DGYINLAAALVAAGDMEGAVQAYVSALQYNPD  133 (388)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            34456666777777777777777777776554432    35566666666666666666666666555554

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.22  E-value=0.00055  Score=58.55  Aligned_cols=68  Identities=18%  Similarity=0.101  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      +...+..|...+.+|+|.+|+..|+.++...|.+    ..+.+.++.+|...|+.++|+..|++....+|+.
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~   71 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALADCRRALELDGQS   71 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence            4567889999999999999999999999987654    3589999999999999999999999998777764

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=97.21  E-value=0.0051  Score=48.41  Aligned_cols=70  Identities=19%  Similarity=0.168  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023077          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTI----IPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN  235 (287)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~----~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~  235 (287)
                      ..+...+..|...+..|+|.+|+.+|++++..    ...+.+.-..+.+.|+.+|...|+.++|+.++++....
T Consensus       125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            34667788899999999999999999999986    23445666789999999999999999999999999843

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=97.20  E-value=0.0095  Score=45.49  Aligned_cols=68  Identities=10%  Similarity=0.013  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---CCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP---TFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~---S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      ..+...+..|...+..|+|.+|+.+|+.++......   ...-+.+.+.|+.+|...|+.++|+.+|++..
T Consensus        64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  134 (203)
T 3gw4_A           64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL  134 (203)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            446678889999999999999999999999874422   22456788999999999999999999998865

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.19  E-value=0.0031  Score=57.44  Aligned_cols=69  Identities=22%  Similarity=0.213  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCc-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF-GGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~l-GGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      ....|..|..+-..|++.+|+.+|++++...  ..+. ...+++++++++...|+.++|+++++++...+|+
T Consensus       171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~--~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          171 GAAGVAHGVAAANLALFTEAERRLTEANDSP--AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE  240 (282)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTST--TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC--CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence            4467889999999999999999999998421  1022 5679999999999999999999999999999998

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.18  E-value=0.0012  Score=57.03  Aligned_cols=66  Identities=9%  Similarity=-0.005  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCch-------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023077          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFG-------------GEIQIWLAMAYEANNRHADCIALYKQLESN  235 (287)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lG-------------GEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~  235 (287)
                      ..++.|..++.+|+|.+|++.|..++...+..+...             .++...|+.+|...|+.++|+.+++++...
T Consensus         6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~   84 (434)
T 4b4t_Q            6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY   84 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            467889999999999999999999999887665432             256788999999999999999999988743

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.17  E-value=0.0016  Score=55.31  Aligned_cols=74  Identities=8%  Similarity=0.001  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCc--h-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF--G-GEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI  241 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~l--G-GEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV  241 (287)
                      +...+..|...+..|+|.+||.+|+.++...+.+...  + ..+.+.++.+|...|+.++|+..|++...-+|+..-
T Consensus       158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  234 (292)
T 1qqe_A          158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD  234 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence            4456778999999999999999999999987765442  1 236778899999999999999999998755665433

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=97.15  E-value=0.0013  Score=60.92  Aligned_cols=68  Identities=21%  Similarity=0.317  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      +...+..|...+..|+|.+|+++|+++++..|.+    ..+.+.|+.+|...|+.++|+..|++..+.+|+.
T Consensus        57 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  124 (568)
T 2vsy_A           57 PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH----PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE  124 (568)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            5567788999999999999999999999977654    4689999999999999999999999998788864

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.15  E-value=0.0012  Score=61.65  Aligned_cols=68  Identities=13%  Similarity=0.010  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      +...+..|...+.+|+|.+|++.|+++++..|.+    ..+.+.|+.+|...|+.++|+..|++..+.+|+.
T Consensus        40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~  107 (477)
T 1wao_1           40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY----IKGYYRRAASNMALGKFRAALRDYETVVKVKPHD  107 (477)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            5667889999999999999999999999976544    4699999999999999999999999988788864

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=97.13  E-value=0.0081  Score=47.27  Aligned_cols=70  Identities=17%  Similarity=0.062  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC----CCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023077          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTII----PRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN  235 (287)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~----~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~  235 (287)
                      ..+...+..|...+.+|+|..|+++|++++...    ...++.-..+.+.|+.+|...|+.++|+.+|++....
T Consensus        83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  156 (283)
T 3edt_B           83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI  156 (283)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            456678889999999999999999999999864    2335666789999999999999999999999999844

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.09  E-value=0.0013  Score=55.57  Aligned_cols=77  Identities=17%  Similarity=0.165  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcC-----------ChHHHH
Q 023077          168 AQLMFELGQKAYGKGM----------YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN-----------RHADCI  226 (287)
Q Consensus       168 ae~~yeaG~aALerGd----------Y~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~G-----------q~EkAI  226 (287)
                      ++..+.-|...++.|+          |.+||..|++|+++.|....    +.+.|..||...|           +.++|+
T Consensus        36 aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~----A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~  111 (158)
T 1zu2_A           36 ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDE----AVWCIGNAYTSFAFLTPDETEAKHNFDLAT  111 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHH----HHHHHHHHHHHhcccCcchhhhhccHHHHH
Confidence            3444445555555444          67999999999998877655    9999999999775           899999


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHH
Q 023077          227 ALYKQLESNHPSKNIRRQAADL  248 (287)
Q Consensus       227 ALCQ~L~~~HPd~qVRqQAKqL  248 (287)
                      ..|++-++-.|+...-..|.++
T Consensus       112 ~~~~kAl~l~P~~~~y~~al~~  133 (158)
T 1zu2_A          112 QFFQQAVDEQPDNTHYLKSLEM  133 (158)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHH
Confidence            9999998899988777666554

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=97.07  E-value=0.0027  Score=55.18  Aligned_cols=75  Identities=17%  Similarity=0.136  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHh---cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHH
Q 023077          170 LMFELGQKAYG---KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAA  246 (287)
Q Consensus       170 ~~yeaG~aALe---rGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAK  246 (287)
                      ..+..|...+.   .|+|..|+..|+.++...|.+    ..+.+.|+.+|...|+.++|+..|++....+|+..-...+.
T Consensus       414 ~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  489 (514)
T 2gw1_A          414 PLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS----EQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI  489 (514)
T ss_dssp             HHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence            56778888899   999999999999999976544    46899999999999999999999999998999876655544


Q ss_pred             HH
Q 023077          247 DL  248 (287)
Q Consensus       247 qL  248 (287)
                      .+
T Consensus       490 ~~  491 (514)
T 2gw1_A          490 TF  491 (514)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=97.06  E-value=0.002  Score=59.64  Aligned_cols=68  Identities=13%  Similarity=-0.011  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHc---CChHHHHHHHHHHHHhCCCH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEAN---NRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~---Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      ....+..|...+..|+|.+|++.|+++++..|.+    ..+...|+.+|...   |+.++|+..|++....+|+.
T Consensus        91 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~  161 (568)
T 2vsy_A           91 PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE----PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA  161 (568)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence            5677888999999999999999999999987654    35899999999999   99999999999999888876

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=97.06  E-value=0.0028  Score=54.25  Aligned_cols=71  Identities=8%  Similarity=-0.026  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCch--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFG--GEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lG--GEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      +...+..|...+..|+|.+||++|+.++...+.+....  ..+.+.++.+|...|+.++|+..|++.. .+|+.
T Consensus       155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~  227 (307)
T 2ifu_A          155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF  227 (307)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence            55677789999999999999999999998776444332  3466777888999999999999999988 77753

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=97.04  E-value=0.0032  Score=55.42  Aligned_cols=67  Identities=18%  Similarity=0.201  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      ....+..|...+..|+|..|+..|+.++...|.+.    .+.+.|+.+|...|+.++|+.+|++....+|+
T Consensus       310 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  376 (537)
T 3fp2_A          310 PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV----YPYIQLACLLYKQGKFTESEAFFNETKLKFPT  376 (537)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            34566677778888888888888888887665543    47788888888888888888888887767765

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=97.03  E-value=0.0018  Score=64.98  Aligned_cols=68  Identities=18%  Similarity=0.147  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      +...+..|...+.+|+|.+|++.|+++++..|.+    ..+.+.|+.+|...|+.++|+..|++..+..|+.
T Consensus        77 ~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~----~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~  144 (723)
T 4gyw_A           77 ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF----ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF  144 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            5677888999999999999999999999976654    4589999999999999999999999988788863

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=97.03  E-value=0.0024  Score=54.60  Aligned_cols=65  Identities=20%  Similarity=0.193  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      ..+..|...+.+|+|.+|++.|+.++...|.+    ..+...|+.+|...|+.++|+.+|++....+|+
T Consensus       239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  303 (388)
T 1w3b_A          239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHF----PDAYCNLANALKEKGSVAEAEDCYNTALRLCPT  303 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC----HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc
Confidence            44556666777777777777777777654433    236667777777777777777777776655554

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.02  E-value=0.0025  Score=54.08  Aligned_cols=72  Identities=19%  Similarity=0.173  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCCCCc--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          168 AQLMFELGQKAYGK-GMYGRAIEFLEGALTIIPRPTFF--GGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       168 ae~~yeaG~aALer-GdY~qAIelLE~Ale~~~~~S~l--GGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      +......|.....+ |+|.+||.+|++++...+.....  -..+...++.+|...|+.++|+..|++....+|+.
T Consensus       117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  191 (292)
T 1qqe_A          117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN  191 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence            45566778877786 99999999999999987744322  24678899999999999999999999999767664

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=97.01  E-value=0.0036  Score=50.37  Aligned_cols=69  Identities=17%  Similarity=0.163  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023077          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPR----PTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN  235 (287)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~----~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~  235 (287)
                      .+...+..|...+.+|+|.+|+.+|+.++.....    +.+.-..+...|+.+|...|+.++|+.+|++....
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   98 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI   98 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            3556788899999999999999999999986432    35556789999999999999999999999998843

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=96.97  E-value=0.0045  Score=49.48  Aligned_cols=68  Identities=13%  Similarity=0.069  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 023077          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP--TFFGGEIQIWLAMAYEANNRHADCIALYKQLES  234 (287)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~--S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~  234 (287)
                      .+...+..|...+..|+|.+|+.+|+.++...+..  ...-..+.+.++.+|...|+.++|+.++++...
T Consensus       222 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  291 (338)
T 3ro2_A          222 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA  291 (338)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            34567888899999999999999999998766533  233356788899999999999999999988763

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=96.97  E-value=0.0047  Score=53.33  Aligned_cols=62  Identities=8%  Similarity=-0.056  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (287)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (287)
                      ..+..|...+..|+|.+|++.|++      +   ...++.+.++.+|...|+.++|+..++.+...+|+.-
T Consensus       103 ~~~~la~~~~~~g~~~~Al~~l~~------~---~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~  164 (291)
T 3mkr_A          103 FLLMAASIYFYDQNPDAALRTLHQ------G---DSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT  164 (291)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTT------C---CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHhC------C---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcH
Confidence            456666666777777777776665      1   2235666677777777777777777777666666643

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=96.97  E-value=0.00039  Score=64.92  Aligned_cols=69  Identities=13%  Similarity=0.057  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      .+...+..|..++.+|+|.+|+++|+++++..|.+    ..+...|+.+|...|+.++|+..|++....+|+.
T Consensus         5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~   73 (477)
T 1wao_1            5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY   73 (477)
T ss_dssp             HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence            34556677888999999999999999999986655    5699999999999999999999999999777763

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=96.96  E-value=0.0048  Score=52.62  Aligned_cols=64  Identities=14%  Similarity=0.062  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC--chHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF--FGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~--lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      ..+..|...+.+|+|.+|+.+|+.++...+....  .-..+...|+.+|...|+.++|+.+|++..
T Consensus       265 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  330 (411)
T 4a1s_A          265 ANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL  330 (411)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4566677777777777777777777765553222  224566667777777777777777776655

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=96.93  E-value=0.0084  Score=50.43  Aligned_cols=85  Identities=11%  Similarity=0.069  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CCCchHHHHHHHHHHHHHcCChHHH-HHHHHH---HHHhCCCHHHH
Q 023077          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPR--PTFFGGEIQIWLAMAYEANNRHADC-IALYKQ---LESNHPSKNIR  242 (287)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~--~S~lGGEAQmwLAtAYqa~Gq~EkA-IALCQ~---L~~~HPd~qVR  242 (287)
                      ...+..|...+.+|+|.+|+.+|++++...+.  ....-+.+.+.++.+|...|+.++| +..|++   +.+...++...
T Consensus       197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~~~~~  276 (293)
T 2qfc_A          197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYK  276 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCcHhhH
Confidence            57788999999999999999999999976542  2233378899999999999999999 555554   44567777776


Q ss_pred             HHHHHHHHHhc
Q 023077          243 RQAADLRYILQ  253 (287)
Q Consensus       243 qQAKqLLyILE  253 (287)
                      +.-..++.-||
T Consensus       277 ~~~~~~~~~~~  287 (293)
T 2qfc_A          277 EALVNKISRLE  287 (293)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHHHh
Confidence            66666666554

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.92  E-value=0.0052  Score=51.94  Aligned_cols=80  Identities=15%  Similarity=0.132  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHH
Q 023077          167 TAQLMFELGQKAYGKG---MYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRR  243 (287)
Q Consensus       167 ~ae~~yeaG~aALerG---dY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRq  243 (287)
                      ..+..|+-|.......   ++.++|.+|+.++....+.  .--...++|+.+|...|+.++|+..|+.+....|+-.-.+
T Consensus        31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~--~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~  108 (152)
T 1pc2_A           31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE--EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK  108 (152)
T ss_dssp             CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH--HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc--chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            3567888888888877   8889999999999966221  1236999999999999999999999999998889765444


Q ss_pred             HHHHH
Q 023077          244 QAADL  248 (287)
Q Consensus       244 QAKqL  248 (287)
                      ..+++
T Consensus       109 ~Lk~~  113 (152)
T 1pc2_A          109 ELERL  113 (152)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44333

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=96.90  E-value=0.009  Score=48.05  Aligned_cols=69  Identities=19%  Similarity=0.122  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC----CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023077          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP----RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN  235 (287)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~----~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~  235 (287)
                      .+...+..|...+..|+|..|+.+|+.++....    .+.+.-..+.+.|+.+|...|+.++|+.+|++..+.
T Consensus        68 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  140 (311)
T 3nf1_A           68 VATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI  140 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            455678889999999999999999999998642    334556789999999999999999999999998844

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.88  E-value=0.014  Score=47.70  Aligned_cols=70  Identities=14%  Similarity=0.089  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCH
Q 023077          168 AQLMFELGQKAYG----KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA----NNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       168 ae~~yeaG~aALe----rGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa----~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      ....+..|...+.    .|+|.+|+.+|++++...      -..+++.|+.+|..    .|+.++|+.+|++.. ...++
T Consensus        38 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~-~~~~~  110 (273)
T 1ouv_A           38 NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKAC-DLKYA  110 (273)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTTCH
T ss_pred             HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHH-HcCCc
Confidence            4556667777777    788888888888877642      24677788888887    888888888888777 44455


Q ss_pred             HHHHH
Q 023077          240 NIRRQ  244 (287)
Q Consensus       240 qVRqQ  244 (287)
                      ...-.
T Consensus       111 ~a~~~  115 (273)
T 1ouv_A          111 EGCAS  115 (273)
T ss_dssp             HHHHH
T ss_pred             cHHHH
Confidence            44433

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=96.87  E-value=0.0017  Score=63.09  Aligned_cols=64  Identities=17%  Similarity=0.211  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      ..+..|...+..|+|.+|++.|+++++..|.+.    .+.+.|+.+|...|+.++ +..|++..+..|+
T Consensus       469 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~----~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~  532 (681)
T 2pzi_A          469 LVWYRAVAELLTGDYDSATKHFTEVLDTFPGEL----APKLALAATAELAGNTDE-HKFYQTVWSTNDG  532 (681)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCS----HHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc
Confidence            444455555555555555555555555444332    245555555555555555 5555555444443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=96.86  E-value=0.012  Score=49.19  Aligned_cols=66  Identities=23%  Similarity=0.203  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--CCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP--TFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~--S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      +...+..|...+..|+|..|+.+|+.++...+..  ...-..+...|+.+|...|+.++|+.+|++..
T Consensus       267 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  334 (406)
T 3sf4_A          267 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL  334 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            5567788999999999999999999999876533  33335788899999999999999999999855

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=96.86  E-value=0.0048  Score=51.96  Aligned_cols=66  Identities=12%  Similarity=0.101  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---CCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTI---IPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~---~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      +...+..|...+.+|+|..|+.+|++++..   .+........+.+.++.+|...|+.++|+.+|++..
T Consensus       155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal  223 (293)
T 2qfc_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI  223 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence            456778899999999999999999999943   443333334799999999999999999999999876

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=96.85  E-value=0.0042  Score=55.77  Aligned_cols=68  Identities=19%  Similarity=0.220  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      +...+..|...+..|+|.+|++.|+.++...|.+    ..+...|+.+|...|+.++|+.+|+++.+.+|+.
T Consensus       516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~  583 (597)
T 2xpi_A          516 AATWANLGHAYRKLKMYDAAIDALNQGLLLSTND----ANVHTAIALVYLHKKIPGLAITHLHESLAISPNE  583 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence            4456777888899999999999999999976544    3699999999999999999999999999888875

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=96.82  E-value=0.00024  Score=49.64  Aligned_cols=66  Identities=15%  Similarity=0.084  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCc--hHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF--GGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~l--GGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      ....+..|...+..|+|.+|++.|+.++...|.+...  ...+.+.++.+|...|+.+.|+..++.+.
T Consensus        38 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  105 (111)
T 2l6j_A           38 PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELP  105 (111)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence            4567889999999999999999999999987765221  26789999999999999998887766554

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=96.81  E-value=0.0076  Score=52.29  Aligned_cols=70  Identities=9%  Similarity=0.020  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023077          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPR-PTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN  235 (287)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~-~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~  235 (287)
                      ..+...+..|...+.+|+|..|+++|++++..... ..+....+.+.|+.+|...|+.++|+.+|++...-
T Consensus       220 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  290 (378)
T 3q15_A          220 FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH  290 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            34667888999999999999999999999985442 34445889999999999999999999999987744

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=96.81  E-value=0.006  Score=51.34  Aligned_cols=68  Identities=13%  Similarity=0.128  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--CCchHHHHHHHHHHHHHcCC-hHHHHHHHHHHH
Q 023077          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP--TFFGGEIQIWLAMAYEANNR-HADCIALYKQLE  233 (287)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~--S~lGGEAQmwLAtAYqa~Gq-~EkAIALCQ~L~  233 (287)
                      ..+...+..|...+.+|+|.+|+.++++++...+..  ...-+.+.+.++.+|...|+ .++|+..|++-.
T Consensus       194 ~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          194 FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            446678999999999999999999999999876533  33347899999999999996 499999998765

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=96.78  E-value=0.004  Score=57.11  Aligned_cols=68  Identities=3%  Similarity=-0.026  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          168 AQLMFELGQKAYGKGM-YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       168 ae~~yeaG~aALerGd-Y~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      +...+..|...+..|+ |.+||..|++++...|.+.    ++...++.+|...|+.++|+..|++.+...|+.
T Consensus       131 ~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~----~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~  199 (382)
T 2h6f_A          131 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY----QVWHHRRVLVEWLRDPSQELEFIADILNQDAKN  199 (382)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC
Confidence            5566777888888896 9999999999998776654    488889999999999999999999888777754

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=96.78  E-value=0.0023  Score=54.08  Aligned_cols=66  Identities=18%  Similarity=0.167  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-------CCCCCCchHHHH----HHHHHHHHHcCChHHHHHHHHHHHHhC
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTI-------IPRPTFFGGEIQ----IWLAMAYEANNRHADCIALYKQLESNH  236 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~-------~~~~S~lGGEAQ----mwLAtAYqa~Gq~EkAIALCQ~L~~~H  236 (287)
                      +...++.|......|+|..||..++.+++.       .|.+    ..+.    +-++.||.+.|+.++|+..|++.+.-.
T Consensus        57 a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~----~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~  132 (159)
T 2hr2_A           57 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE----GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI  132 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCch----HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            336889999999999999999999999998       6643    4466    999999999999999999999988443


Q ss_pred             C
Q 023077          237 P  237 (287)
Q Consensus       237 P  237 (287)
                      |
T Consensus       133 p  133 (159)
T 2hr2_A          133 E  133 (159)
T ss_dssp             H
T ss_pred             C
Confidence            3

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=96.70  E-value=0.014  Score=50.40  Aligned_cols=68  Identities=7%  Similarity=0.072  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-C-CchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP-T-FFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~-S-~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      ..+...+..|...+.+|+|..|+.+|++++...... . +.-..+.+.|+.+|...|+.++|+.+|++..
T Consensus       222 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  291 (383)
T 3ulq_A          222 LMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGM  291 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            345678889999999999999999999999864422 2 5557899999999999999999999998866

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=96.67  E-value=0.017  Score=55.48  Aligned_cols=68  Identities=6%  Similarity=-0.128  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTI----IPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~----~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      .++......|.....+|+|.+|+.+++++++.    .+++.+.-+....-|+.+|..+|+.++|+.+|++-.
T Consensus       349 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al  420 (490)
T 3n71_A          349 YVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY  420 (490)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            46778888899999999999999999999854    568888888999999999999999999999998754

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=96.62  E-value=0.0084  Score=51.73  Aligned_cols=66  Identities=20%  Similarity=0.152  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHH-HHHHHHHHHHhCCCH
Q 023077          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHAD-CIALYKQLESNHPSK  239 (287)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~Ek-AIALCQ~L~~~HPd~  239 (287)
                      ..+..|...+..|+|.+|++.|+.++...|.+.    .+...|+.+|...|+..+ |..+++++...+|+.
T Consensus       202 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~----~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~  268 (291)
T 3mkr_A          202 LLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP----ETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH  268 (291)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCC
Confidence            344556666666666666666666666544332    256666666666666654 345655555556543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.61  E-value=0.022  Score=52.54  Aligned_cols=75  Identities=17%  Similarity=0.219  Sum_probs=63.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-------CCCHHHHHHH
Q 023077          173 ELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN-------HPSKNIRRQA  245 (287)
Q Consensus       173 eaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~-------HPd~qVRqQA  245 (287)
                      ..+...+..|+|.+||..|..++...|.+-.    +...|..||...|+..+|+..|+.+...       -|.++++.--
T Consensus       176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~----~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~  251 (388)
T 2ff4_A          176 AKAEAEIACGRASAVIAELEALTFEHPYREP----LWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN  251 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH----HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            3456678999999999999999998877655    8899999999999999999999998732       4889998888


Q ss_pred             HHHHHH
Q 023077          246 ADLRYI  251 (287)
Q Consensus       246 KqLLyI  251 (287)
                      +++|..
T Consensus       252 ~~il~~  257 (388)
T 2ff4_A          252 ERILRQ  257 (388)
T ss_dssp             HHHHTT
T ss_pred             HHHHcC
Confidence            877653

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=96.51  E-value=0.013  Score=54.10  Aligned_cols=72  Identities=10%  Similarity=0.081  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHhc--------CCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          168 AQLMFELGQKAYGK--------GMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       168 ae~~yeaG~aALer--------GdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      ....+..|...+..        |+|.+|+..|++++...|. .+.-..+.+.|+.+|...|+.++|+..|++.....|+.
T Consensus       213 ~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  291 (474)
T 4abn_A          213 GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK-ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW  291 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG-GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC-cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            44556677778887        9999999999999997652 11335699999999999999999999999988778874


Q ss_pred             H
Q 023077          240 N  240 (287)
Q Consensus       240 q  240 (287)
                      .
T Consensus       292 ~  292 (474)
T 4abn_A          292 P  292 (474)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=96.50  E-value=0.0059  Score=56.03  Aligned_cols=69  Identities=10%  Similarity=-0.044  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (287)
                      +...+..|...+..|+|..||..|++++...|.+..    +.+.++.+|...|+.++|+..|++.+..+|+..
T Consensus       166 ~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~----a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~  234 (382)
T 2h6f_A          166 YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYH----AWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNN  234 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHH----HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH
Confidence            556788899999999999999999999998877654    999999999999999999999999998888643

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=96.50  E-value=0.013  Score=56.27  Aligned_cols=69  Identities=9%  Similarity=0.056  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC----CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP----RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~----~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      +..++..++.+..+..+|+|.+|+.+++.+++...    .+.+.-..+...|+.+|..+|+.++|+.+|++..
T Consensus       306 l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL  378 (490)
T 3n71_A          306 IQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMV  378 (490)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            44455677777788899999999999999996543    5666677899999999999999999999998865

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=96.48  E-value=0.0099  Score=53.38  Aligned_cols=64  Identities=16%  Similarity=0.191  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023077          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (287)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (287)
                      ..+..|...+..|+|.+|+++|+.++...|.+    ..+...|+.+|...|+.++|+.+|++....+|
T Consensus       375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  438 (597)
T 2xpi_A          375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQF----GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ  438 (597)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            34445566666677777777777666644432    23566666666666666666666666554444

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.47  E-value=0.034  Score=45.35  Aligned_cols=71  Identities=11%  Similarity=0.074  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCC
Q 023077          166 ATAQLMFELGQKAYG----KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA----NNRHADCIALYKQLESNHP  237 (287)
Q Consensus       166 e~ae~~yeaG~aALe----rGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa----~Gq~EkAIALCQ~L~~~HP  237 (287)
                      ......+..|...+.    .|+|.+|+.+|++++...      ...+.+.|+.+|..    .|+.++|+.+|++.. ...
T Consensus        72 ~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~-~~~  144 (273)
T 1ouv_A           72 NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC-DLN  144 (273)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH-HTT
T ss_pred             CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHH-hcC
Confidence            346678888999999    999999999999999852      35799999999999    999999999999999 454


Q ss_pred             CHHHHH
Q 023077          238 SKNIRR  243 (287)
Q Consensus       238 d~qVRq  243 (287)
                      ++...-
T Consensus       145 ~~~a~~  150 (273)
T 1ouv_A          145 DGDGCT  150 (273)
T ss_dssp             CHHHHH
T ss_pred             cHHHHH
Confidence            554433

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=96.46  E-value=0.023  Score=48.37  Aligned_cols=69  Identities=14%  Similarity=-0.005  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023077          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP----TFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (287)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~----S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (287)
                      ...+..|...+.+|+|.+|+++++.++...+..    ++....+...|+.+|...|+.++|+.+|++.....|
T Consensus        94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  166 (373)
T 1hz4_A           94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS  166 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence            345667778888888888888888887655421    234456677788888888888888888887664444

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=96.45  E-value=0.008  Score=51.38  Aligned_cols=63  Identities=13%  Similarity=0.052  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC--chHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF--FGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~--lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      ...+.|......|+|.+|+.+|++++........  .-..+...|+.+|.. |+.++|+..|++-.
T Consensus        78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al  142 (307)
T 2ifu_A           78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAA  142 (307)
T ss_dssp             HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Confidence            3334444444445555555555555544322111  112344444555544 55555555554443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=96.36  E-value=0.01  Score=49.99  Aligned_cols=66  Identities=12%  Similarity=0.104  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC---CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIP---RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~---~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      +......|...+..|+|.+|+.+|++++....   .+.+.-..+.+.|+.+|...|+.++|+..|++..
T Consensus       155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al  223 (293)
T 3u3w_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI  223 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            33567789999999999999999999996433   3455556788999999999999999999998766

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=96.35  E-value=0.0074  Score=52.34  Aligned_cols=69  Identities=17%  Similarity=0.223  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 023077          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP--RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES  234 (287)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~--~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~  234 (287)
                      ..+...+..|...+..|+|.+|+++|++++...+  .+...-+.+...|+.+|...|+.++|+..|++...
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~  250 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK  250 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3466777899999999999999999999998655  23344567888999999999999999999999885

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=96.32  E-value=0.0048  Score=59.91  Aligned_cols=63  Identities=13%  Similarity=0.074  Sum_probs=36.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      .+..|...+..|+|.+ ++.|+++++..|.+.    .+.+.|+.+|...|+.++|+..|++.....|+
T Consensus       504 ~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~  566 (681)
T 2pzi_A          504 KLALAATAELAGNTDE-HKFYQTVWSTNDGVI----SAAFGLARARSAEGDRVGAVRTLDEVPPTSRH  566 (681)
T ss_dssp             HHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTT
T ss_pred             HHHHHHHHHHcCChHH-HHHHHHHHHhCCchH----HHHHHHHHHHHHcCCHHHHHHHHHhhcccCcc
Confidence            3445555666666666 666666666544432    25666666666666666666666665544554

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=96.29  E-value=0.021  Score=46.48  Aligned_cols=68  Identities=18%  Similarity=0.104  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcC----ChHHHHHHHHHHHHhCCCHHH
Q 023077          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN----RHADCIALYKQLESNHPSKNI  241 (287)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~G----q~EkAIALCQ~L~~~HPd~qV  241 (287)
                      .-+...+..|...+..|+|.+|+.+|++++..   .   ...+++.|+..|.. |    +.++|+.+|++.. ...++..
T Consensus        16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~-~~g~~~a   87 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ---G---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV-EAGSKSG   87 (212)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT---T---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH-HTTCHHH
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---C---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH-HCCCHHH
Confidence            34566777888888888888888888888763   1   23678888888887 6    7888888888877 4555543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=96.22  E-value=0.067  Score=45.52  Aligned_cols=65  Identities=20%  Similarity=0.127  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCc-hHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF-GGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~l-GGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      +..+-.|..++.+|+|.+|+.+++.++...+...+. -+.+...++.+|...|+.++|+.+|++..
T Consensus        15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   80 (373)
T 1hz4_A           15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE   80 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            345566777777888888888888877766543321 23456677777778888888887777654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.22  E-value=0.017  Score=54.71  Aligned_cols=68  Identities=10%  Similarity=0.033  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTI----IPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~----~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      .++......|.....+|+|.+|+.+++++++.    .+++.+.-+...+-|+.+|..+|+.++|+.+|++-.
T Consensus       338 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al  409 (433)
T 3qww_A          338 YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI  409 (433)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            35677788899999999999999999999854    668888888999999999999999999999998754

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=96.22  E-value=0.01  Score=42.74  Aligned_cols=50  Identities=14%  Similarity=0.121  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          186 RAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       186 qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      .|++.|+.++...|.+    ..+.+.|+.+|...|+.++|+..|++.+..+|+.
T Consensus         3 ~a~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   52 (115)
T 2kat_A            3 AITERLEAMLAQGTDN----MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY   52 (115)
T ss_dssp             CHHHHHHHHHTTTCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHhCCCc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc
Confidence            5889999999866644    3599999999999999999999999999788864

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=96.21  E-value=0.011  Score=50.96  Aligned_cols=67  Identities=12%  Similarity=0.138  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC---CchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT---FFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S---~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      .+...+..|...+..|+|..|+.++++++...+...   +.-+.+...|+.+|...|+.++|+..|++..
T Consensus       142 ~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  211 (383)
T 3ulq_A          142 KAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAY  211 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            456667777777888888888888888877655442   2334677778888888888888888877665

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.16  E-value=0.017  Score=54.14  Aligned_cols=65  Identities=5%  Similarity=-0.028  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          169 QLMFELGQKAYGKGMYGRAIEFLEGALTI----IPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Ale~----~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      +..+.....+..+|+|.+|+++++.+++.    ..++.+.-..+...|+.+|...|+.++|+.+|++..
T Consensus       288 ~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L  356 (429)
T 3qwp_A          288 QESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM  356 (429)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            34556666788999999999999999965    345666678899999999999999999999999876

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.11  E-value=0.031  Score=52.92  Aligned_cols=66  Identities=8%  Similarity=-0.088  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTI----IPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~----~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      +...++.+..+-..|+|.+|+.+++++++.    ..++.+.-..+...|+.+|..+|+.++|+.+|++..
T Consensus       298 ~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL  367 (433)
T 3qww_A          298 ARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKII  367 (433)
T ss_dssp             HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            444566677777889999999999999975    345666667889999999999999999999999876

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.10  E-value=0.045  Score=42.25  Aligned_cols=69  Identities=12%  Similarity=0.043  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCC
Q 023077          166 ATAQLMFELGQKAYG----KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA----NNRHADCIALYKQLESNHP  237 (287)
Q Consensus       166 e~ae~~yeaG~aALe----rGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa----~Gq~EkAIALCQ~L~~~HP  237 (287)
                      .-+...+..|..-+.    .++|.+|+.+|+++++.   .   ...+++.|+..|..    .++.++|+.+|++-. ...
T Consensus        55 g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~---g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~~g  127 (138)
T 1klx_A           55 NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL---N---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC-RLG  127 (138)
T ss_dssp             TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT
T ss_pred             CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC---C---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH-HCC
Confidence            456778888988888    89999999999999984   2   24799999999999    999999999999998 566


Q ss_pred             CHHH
Q 023077          238 SKNI  241 (287)
Q Consensus       238 d~qV  241 (287)
                      ++.-
T Consensus       128 ~~~A  131 (138)
T 1klx_A          128 SEDA  131 (138)
T ss_dssp             CHHH
T ss_pred             CHHH
Confidence            6643

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.07  E-value=0.02  Score=53.71  Aligned_cols=68  Identities=6%  Similarity=-0.029  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTI----IPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~----~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      .++......|.....+|+|.+|+.++++++..    .+++.+.-+...+-|+..|..+|+.++|+.+|++-.
T Consensus       327 ~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al  398 (429)
T 3qwp_A          327 YQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF  398 (429)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            35677788888999999999999999998854    678899889999999999999999999999998654

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=95.86  E-value=0.021  Score=49.46  Aligned_cols=74  Identities=20%  Similarity=0.209  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC---CCCC----c--------------hHHHHHHHHHHHHHcCChHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIP---RPTF----F--------------GGEIQIWLAMAYEANNRHADCI  226 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~---~~S~----l--------------GGEAQmwLAtAYqa~Gq~EkAI  226 (287)
                      ++..+--|..-|.+|+|.+|..+|..|+....   .+..    .              -.++.+.++.||...|+.++||
T Consensus        63 ~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai  142 (167)
T 3ffl_A           63 YQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAI  142 (167)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHH
Confidence            56678889999999999999999999864433   1111    1              1279999999999999999999


Q ss_pred             HHHHHHHHhCCCHHH
Q 023077          227 ALYKQLESNHPSKNI  241 (287)
Q Consensus       227 ALCQ~L~~~HPd~qV  241 (287)
                      ++-+.|-.+...|.|
T Consensus       143 ~~Le~Ip~k~Rt~kv  157 (167)
T 3ffl_A          143 AILDGIPSRQRTPKI  157 (167)
T ss_dssp             HHHHTSCGGGCCHHH
T ss_pred             HHHhcCCchhcCHHH
Confidence            998777545555544

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=95.80  E-value=0.016  Score=52.85  Aligned_cols=66  Identities=9%  Similarity=0.060  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      ..|..|..+++.|+|..|+.+|+++....+  ......+.++|.+||...|+.++|+..|++.. .-|.
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d--~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~-~g~~  202 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPD--KFLAGAAGVAHGVAAANLALFTEAERRLTEAN-DSPA  202 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGCSC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TSTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhccCC--cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHh-cCCC
Confidence            358888999999999999999998766331  11345799999999999999999999999998 5554

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=95.78  E-value=0.067  Score=49.38  Aligned_cols=65  Identities=9%  Similarity=0.019  Sum_probs=57.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023077          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (287)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (287)
                      .+-.|...+..|+|.+|+++|.+++...+  +....+++..+|..|-..|+.+.|.++++.+.+.+|
T Consensus       103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~--~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~  167 (310)
T 3mv2_B          103 LYLLATAQAILGDLDKSLETCVEGIDNDE--AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIE  167 (310)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHTSSC--STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhccCC--CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence            45678888889999999999999887444  345678999999999999999999999999997888

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=95.75  E-value=0.027  Score=37.76  Aligned_cols=49  Identities=31%  Similarity=0.470  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcC
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN  220 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~G  220 (287)
                      ....+..|...+..|+|.+|+.+|+.++...|.+    ..+...|+.+|...|
T Consensus        43 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           43 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAKQNLGNAKQKQG   91 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhcC
Confidence            3456788999999999999999999999977654    358889999988765

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=95.71  E-value=0.091  Score=45.77  Aligned_cols=77  Identities=16%  Similarity=0.135  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCch------------------------------------------
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFG------------------------------------------  205 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lG------------------------------------------  205 (287)
                      ....+..|...+..|+|..|+..|++++...|.+....                                          
T Consensus       247 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  326 (472)
T 4g1t_A          247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKA  326 (472)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            34456678888899999999999999888777653321                                          


Q ss_pred             -------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHH
Q 023077          206 -------GEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ  244 (287)
Q Consensus       206 -------GEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQ  244 (287)
                             ..+.+.|+.+|...|+.++|+..|++..+..|++.....
T Consensus       327 ~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~  372 (472)
T 4g1t_A          327 DEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQL  372 (472)
T ss_dssp             HHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             hhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHH
Confidence                   112356788999999999999999998867888766543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=95.67  E-value=0.057  Score=49.29  Aligned_cols=65  Identities=9%  Similarity=-0.041  Sum_probs=54.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023077          172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI  241 (287)
Q Consensus       172 yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV  241 (287)
                      +..+. ..++|++.+|...|+.+++..|.+.    .+++.++..+...|+.++|+.+|+..+..||+..+
T Consensus        17 ~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~----~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~l   81 (530)
T 2ooe_A           17 SILIR-EAQNQPIDKARKTYERLVAQFPSSG----RFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDL   81 (530)
T ss_dssp             HHHHH-HHHSSCHHHHHHHHHHHHTTCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHH
T ss_pred             HHHHH-HHHhCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHH
Confidence            33344 3678999999999999999776553    58888999999999999999999999988897654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=95.62  E-value=0.11  Score=42.07  Aligned_cols=71  Identities=11%  Similarity=0.135  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHc-C-----ChHHHHHHHHHHHHhCC
Q 023077          168 AQLMFELGQKAYG----KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEAN-N-----RHADCIALYKQLESNHP  237 (287)
Q Consensus       168 ae~~yeaG~aALe----rGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~-G-----q~EkAIALCQ~L~~~HP  237 (287)
                      +...+..|..-+.    .++|.+|+.+|++++.. +.+.    .+++.|+.+|... |     +.++|+.+|++-. ...
T Consensus       125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~----~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~-~~g  198 (212)
T 3rjv_A          125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTG----YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSC-LEG  198 (212)
T ss_dssp             HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTT----HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHH-HHT
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCH----HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH-HcC
Confidence            5567777877777    78888888888888875 2222    3788888888643 4     7888888888887 455


Q ss_pred             CHHHHHH
Q 023077          238 SKNIRRQ  244 (287)
Q Consensus       238 d~qVRqQ  244 (287)
                      ++.-...
T Consensus       199 ~~~A~~~  205 (212)
T 3rjv_A          199 FDTGCEE  205 (212)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHH
Confidence            5554443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.61  E-value=0.046  Score=47.10  Aligned_cols=67  Identities=13%  Similarity=0.141  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPR--PTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~--~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      .+...+..|..-+++|+|.+|+.+|..++.....  ..+.-.++.+.++.+|...|+.++|+.+|++..
T Consensus       134 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al  202 (434)
T 4b4t_Q          134 KHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR  202 (434)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            3566788899999999999999999999866553  344556889999999999999999999998764

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=95.48  E-value=0.066  Score=45.41  Aligned_cols=57  Identities=9%  Similarity=0.000  Sum_probs=27.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       174 aG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      -|......|+|..|++.|+.++...|.+..   .+.+.++..+...|+.++|+.+|++..
T Consensus       105 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~a~  161 (308)
T 2ond_A          105 YADYEESRMKYEKVHSIYNRLLAIEDIDPT---LVYIQYMKFARRAEGIKSGRMIFKKAR  161 (308)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTSSSSCTH---HHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHhccccCcc---HHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            344444455555555555555553332211   145555555555555555555555555

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=95.34  E-value=0.094  Score=44.46  Aligned_cols=62  Identities=15%  Similarity=-0.038  Sum_probs=31.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhC--CCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          175 GQKAYGKGMYGRAIEFLEGALTII--PRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       175 G~aALerGdY~qAIelLE~Ale~~--~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      |..-...|++..|+.+|+.++...  ++...  ..+...++..+...|+.++|+.+++...+.+|+
T Consensus       210 ~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~--~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~  273 (308)
T 2ond_A          210 IDYLSHLNEDNNTRVLFERVLTSGSLPPEKS--GEIWARFLAFESNIGDLASILKVEKRRFTAFRE  273 (308)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHSSSSCGGGC--HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhccCCCHHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence            344445566666666666665532  21111  234444455555556666666666655555553

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=95.23  E-value=0.067  Score=50.93  Aligned_cols=74  Identities=12%  Similarity=0.055  Sum_probs=62.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 023077          172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRY  250 (287)
Q Consensus       172 yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLy  250 (287)
                      ...|..++-+|++..|+.+|++|+...  ++   -.+.+.+..+|.-.|+.++|++.|.+-..-.|...+-.|++.+.+
T Consensus       281 ~alal~~l~~gd~d~A~~~l~rAl~Ln--~s---~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~~~~~l~F  354 (372)
T 3ly7_A          281 QIKAVSALVKGKTDESYQAINTGIDLE--MS---WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIF  354 (372)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHC--CC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHHHHHHSSS
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhcC--CC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHHHHhCcee
Confidence            344666778899999999999999985  23   247789999999999999999999887779999999999988743

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=95.11  E-value=0.36  Score=39.67  Aligned_cols=81  Identities=16%  Similarity=0.161  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHhcCCHHH---HHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGR---AIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ  244 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~q---AIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQ  244 (287)
                      .+..|+-|-......+-..   +|.+|+..+....+.  .--+..++||.+|.+.|+..+|...|..|....|+-   .|
T Consensus        35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~--~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n---~Q  109 (126)
T 1nzn_A           35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE--EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN---NQ  109 (126)
T ss_dssp             HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc--hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC---HH
Confidence            5667777777777776666   999999998854221  223689999999999999999999999999888865   35


Q ss_pred             HHHHHHHhc
Q 023077          245 AADLRYILQ  253 (287)
Q Consensus       245 AKqLLyILE  253 (287)
                      |+.|...++
T Consensus       110 A~~Lk~~i~  118 (126)
T 1nzn_A          110 AKELERLID  118 (126)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666655443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=94.96  E-value=0.18  Score=45.52  Aligned_cols=66  Identities=17%  Similarity=0.112  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCC
Q 023077          167 TAQLMFELGQKAYG----KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA----NNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       167 ~ae~~yeaG~aALe----rGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa----~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      .....+..|..-+.    .++|.+|+.+|+++++..      -..++..|+.+|..    .|+.++|+.+|++.....|+
T Consensus       362 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  435 (490)
T 2xm6_A          362 EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG------LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN  435 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence            35567777888788    899999999999998842      15799999999998    89999999999999877765

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.83  E-value=0.1  Score=38.99  Aligned_cols=48  Identities=10%  Similarity=-0.099  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAY  216 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAY  216 (287)
                      ....+-.|..+|++|+|.+||.+++.++...|. ++--..++-.+..|.
T Consensus        43 ~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~i~~~I~~A~   90 (93)
T 3bee_A           43 EAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVTIIESINKAK   90 (93)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHHHHHHHHHHH
Confidence            556778899999999999999999999998888 665555555555543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=94.83  E-value=0.016  Score=40.30  Aligned_cols=56  Identities=16%  Similarity=0.246  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023077          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (287)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (287)
                      ..+..|...+..|+|.+|++.|+.++...|.+..    +..+        +...+|+..|+++...+|
T Consensus        37 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~--------~~~~~a~~~~~~~~~~~p   92 (99)
T 2kc7_A           37 AYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA----LQAR--------KMVMDILNFYNKDMYNQL   92 (99)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH----HHHH--------HHHHHHHHHHCCTTHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH----HHHH--------HHHHHHHHHHHHHhccCc
Confidence            6788899999999999999999999998876655    3322        666777777776654444

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=94.59  E-value=0.17  Score=44.00  Aligned_cols=75  Identities=7%  Similarity=-0.020  Sum_probs=52.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHH-HHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHH
Q 023077          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLA-MAYEANNRHADCIALYKQLESNHPSKNIRRQAA  246 (287)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLA-tAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAK  246 (287)
                      .+..|...+..|+|.+|++.|++++...+.+... ..+.+.+. .++...|+.++||..|++-.+-.|+..-+..+.
T Consensus       337 ~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~  412 (472)
T 4g1t_A          337 CSILASLHALADQYEEAEYYFQKEFSKELTPVAK-QLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMK  412 (472)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHH-HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred             hhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH
Confidence            3567888999999999999999999865443221 12222232 345578999999999999886777765544433

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=94.41  E-value=0.36  Score=43.55  Aligned_cols=66  Identities=14%  Similarity=0.186  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCH
Q 023077          168 AQLMFELGQKAYG----KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA----NNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       168 ae~~yeaG~aALe----rGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa----~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      +...+..|...+.    .++|.+|+.+|++++..   .   ...+++.|+..|..    .++.++|+.+|++.. ...++
T Consensus        75 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~---~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~-~~~~~  147 (490)
T 2xm6_A           75 TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK---G---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAA-EQGRD  147 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTTCH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-HCCCH
Confidence            4455666666666    66666666666666652   1   12466666666666    666666666666666 33344


Q ss_pred             H
Q 023077          240 N  240 (287)
Q Consensus       240 q  240 (287)
                      .
T Consensus       148 ~  148 (490)
T 2xm6_A          148 S  148 (490)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=93.68  E-value=0.12  Score=43.35  Aligned_cols=80  Identities=10%  Similarity=0.040  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHH
Q 023077          168 AQLMFELGQKAYGKG---MYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ  244 (287)
Q Consensus       168 ae~~yeaG~aALerG---dY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQ  244 (287)
                      .+..|+-+-......   +...+|.+|+..+...+...   -+-.++||.+|.+.|+.++|...|..|....|+-.   |
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~---Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~---Q  113 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR---RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK---Q  113 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH---H
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchh---HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH---H
Confidence            455666666655544   55689999999998654333   37899999999999999999999999997777753   5


Q ss_pred             HHHHHHHhc
Q 023077          245 AADLRYILQ  253 (287)
Q Consensus       245 AKqLLyILE  253 (287)
                      |+.|...++
T Consensus       114 A~~Lk~~Ie  122 (134)
T 3o48_A          114 VGALKSMVE  122 (134)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666655443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=93.24  E-value=0.25  Score=45.03  Aligned_cols=55  Identities=16%  Similarity=0.138  Sum_probs=45.3

Q ss_pred             cCCHH-------HHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          181 KGMYG-------RAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       181 rGdY~-------qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      .|++.       .|+..|+.+++...+.+   ..+.+.++..|...|+.++|+.+|++.....|+
T Consensus       292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~---~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~  353 (530)
T 2ooe_A          292 KGDMNNAKLFSDEAANIYERAISTLLKKN---MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI  353 (530)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTTTCSSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS
T ss_pred             ccchhhhhhhhHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc
Confidence            79987       89999999997333332   468899999999999999999999999965664

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=92.98  E-value=0.32  Score=41.22  Aligned_cols=81  Identities=11%  Similarity=0.049  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHH
Q 023077          167 TAQLMFELGQKAYGKGM---YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRR  243 (287)
Q Consensus       167 ~ae~~yeaG~aALerGd---Y~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRq  243 (287)
                      +.+..|+-+-......+   -..+|.+|+..+...+...+   +-.++||.+|.+.|+..+|..+|..|....|+-   +
T Consensus        38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~R---dcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n---~  111 (144)
T 1y8m_A           38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRR---ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN---K  111 (144)
T ss_dssp             CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHH---HHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC---H
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchh---HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc---H
Confidence            45566777766666554   45799999999986665544   689999999999999999999999999888875   3


Q ss_pred             HHHHHHHHhc
Q 023077          244 QAADLRYILQ  253 (287)
Q Consensus       244 QAKqLLyILE  253 (287)
                      ||+.|...++
T Consensus       112 QA~~Lk~~Ie  121 (144)
T 1y8m_A          112 QVGALKSMVE  121 (144)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5666655554

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=92.95  E-value=0.023  Score=52.00  Aligned_cols=52  Identities=17%  Similarity=0.076  Sum_probs=13.0

Q ss_pred             HHHHHhcCCH---HHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcC-----ChHHHHHHHHHHH
Q 023077          175 GQKAYGKGMY---GRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN-----RHADCIALYKQLE  233 (287)
Q Consensus       175 G~aALerGdY---~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~G-----q~EkAIALCQ~L~  233 (287)
                      |...+..|++   .+|+++|++++..    .   ..+++.|+.+|...|     +.++|+.+|++..
T Consensus        42 g~~y~~~g~~~d~~~A~~~~~~A~~~----~---~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa  101 (452)
T 3e4b_A           42 ADIQVGTRDPAQIKQAEATYRAAADT----S---PRAQARLGRLLAAKPGATEAEHHEAESLLKKAF  101 (452)
T ss_dssp             C-----------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCCCCCHHHHHHHHHHHHhC----C---HHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHH
Confidence            3333444444   4555555555432    1   124555555444444     4455555555554

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=92.40  E-value=0.3  Score=48.69  Aligned_cols=73  Identities=18%  Similarity=0.055  Sum_probs=54.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 023077          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRY  250 (287)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLy  250 (287)
                      ....+ .||..|+|..|..+|.....    ....-.+.++|+++|+.+.|+.++|..+|+.+. ++ ..---.-|.+.|.
T Consensus       289 e~~~r-~Alr~~d~~~a~~~~~~l~~----~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a-~~-~~fYg~lAa~~Lg  361 (618)
T 1qsa_A          289 ERRVR-MALGTGDRRGLNTWLARLPM----EAKEKDEWRYWQADLLLERGREAEAKEILHQLM-QQ-RGFYPMVAAQRIG  361 (618)
T ss_dssp             HHHHH-HHHHHTCHHHHHHHHHHSCT----TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TS-CSHHHHHHHHHTT
T ss_pred             HHHHH-HHHHCCCHHHHHHHHHHccc----cccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh-cC-CChHHHHHHHHcC
Confidence            35555 58899999999999987443    222346799999999999999999999999999 54 4444444555443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=92.14  E-value=1.2  Score=41.07  Aligned_cols=74  Identities=23%  Similarity=0.131  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCch------------------HHHHHHHHHHHHHcCChHHHHHH
Q 023077          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFG------------------GEIQIWLAMAYEANNRHADCIAL  228 (287)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lG------------------GEAQmwLAtAYqa~Gq~EkAIAL  228 (287)
                      .++..+..|..+...|+...|++.|+.|+......--.|                  ..+...++.++.+.|+.++|+..
T Consensus       114 ~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~  193 (388)
T 2ff4_A          114 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE  193 (388)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            456678888889999999999999999998875432111                  14555678899999999999999


Q ss_pred             HHHHHHhCCCHH
Q 023077          229 YKQLESNHPSKN  240 (287)
Q Consensus       229 CQ~L~~~HPd~q  240 (287)
                      |+.+...||-.+
T Consensus       194 l~~~~~~~P~~E  205 (388)
T 2ff4_A          194 LEALTFEHPYRE  205 (388)
T ss_dssp             HHHHHHHSTTCH
T ss_pred             HHHHHHhCCCCH
Confidence            999998999655

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=91.99  E-value=0.4  Score=41.40  Aligned_cols=63  Identities=8%  Similarity=0.019  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC-----chHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 023077          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF-----FGGEIQIWLAMAYEANNRHADCIALYKQL  232 (287)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~-----lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L  232 (287)
                      ..++..+.++++|.|+.|+-+...+++..+.+..     .--++++|+|.||-+.|+.-+|...|++-
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA   89 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA   89 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            4678899999999999999999988876543322     23479999999999999999999999883

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=90.38  E-value=1.9  Score=32.99  Aligned_cols=64  Identities=13%  Similarity=0.083  Sum_probs=52.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCHHHHHH
Q 023077          174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA----NNRHADCIALYKQLESNHPSKNIRRQ  244 (287)
Q Consensus       174 aG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa----~Gq~EkAIALCQ~L~~~HPd~qVRqQ  244 (287)
                      .|..-+..+.+.+|+.+|++++..   .   ...+++.|+..|..    .++.++|+.+|++-. ...++...-+
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~---g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~~g~~~a~~~   98 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL---N---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKAC-GLNDQDGCLI   98 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT---T---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC---C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH-cCCCHHHHHH
Confidence            666667778899999999999985   2   24799999999998    899999999999998 5666654433

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=90.13  E-value=0.47  Score=33.90  Aligned_cols=34  Identities=18%  Similarity=0.214  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          206 GEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       206 GEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      ..+.+.|+.+|...|+.++|+..|++.+...|+.
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   40 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDPDY   40 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            4689999999999999999999999999888863

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=88.39  E-value=1.4  Score=39.70  Aligned_cols=69  Identities=12%  Similarity=0.066  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHhcCCHH-HHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCHH
Q 023077          168 AQLMFELGQKAYGKGMYG-RAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN--RHADCIALYKQLESNHPSKN  240 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~-qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~G--q~EkAIALCQ~L~~~HPd~q  240 (287)
                      +...+..-.+.+.+|.|. +|+...+.++...|.+..    +...-..++...|  +.++|+.+|..++..+|..-
T Consensus        32 y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~t----aWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y  103 (306)
T 3dra_A           32 YKQIMGLLLALMKAEEYSERALHITELGINELASHYT----IWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY  103 (306)
T ss_dssp             HHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHH----HHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH
Confidence            445566666778889995 899999999998888776    8888899999999  99999999999998888753

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=87.90  E-value=2  Score=39.60  Aligned_cols=88  Identities=9%  Similarity=-0.046  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCC----------hHHHHHHHH
Q 023077          162 AERRATAQLMFELGQKAYGKGMYG-RAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR----------HADCIALYK  230 (287)
Q Consensus       162 a~~~e~ae~~yeaG~aALerGdY~-qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq----------~EkAIALCQ  230 (287)
                      +.+...+......-......|.|+ +|+++++.++...|.+..    |...--.+....|+          .++++.+|.
T Consensus        23 ~~ki~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~yt----aWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~   98 (331)
T 3dss_A           23 EQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFAT----LWNCRREVLQHLETEKSPEESAALVKAELGFLE   98 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHH----HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHH----HHHHHHHHHHHhcccccchhhhHHHHHHHHHHH
Confidence            344455666666666777899999 799999999997776655    66666666666665          589999999


Q ss_pred             HHHHhCCC-HHHHHHHHHHHHHhc
Q 023077          231 QLESNHPS-KNIRRQAADLRYILQ  253 (287)
Q Consensus       231 ~L~~~HPd-~qVRqQAKqLLyILE  253 (287)
                      .+...||. +++=..=.-+|..|.
T Consensus        99 ~~L~~~PKny~aW~hR~wlL~~l~  122 (331)
T 3dss_A           99 SCLRVNPKSYGTWHHRCWLLSRLP  122 (331)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHCS
T ss_pred             HHHHhCCCCHHHHHHHHHHHhccC
Confidence            99988884 333222223455444

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=87.87  E-value=1.8  Score=39.78  Aligned_cols=22  Identities=9%  Similarity=-0.070  Sum_probs=10.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHh
Q 023077          175 GQKAYGKGMYGRAIEFLEGALT  196 (287)
Q Consensus       175 G~aALerGdY~qAIelLE~Ale  196 (287)
                      ++..+..|+++.|.+.|+.+.+
T Consensus       143 vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B          143 IEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHh
Confidence            3444455555555555554433

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=87.63  E-value=2.6  Score=38.48  Aligned_cols=65  Identities=11%  Similarity=-0.057  Sum_probs=44.3

Q ss_pred             HHHHHHHHhc----CCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHH-H--HHcCChHHHHHHHHHHHHhCCCHHHHHH
Q 023077          172 FELGQKAYGK----GMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMA-Y--EANNRHADCIALYKQLESNHPSKNIRRQ  244 (287)
Q Consensus       172 yeaG~aALer----GdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtA-Y--qa~Gq~EkAIALCQ~L~~~HPd~qVRqQ  244 (287)
                      +..|......    ++|.+|+.+|++++   + ..   ..+++.|+.. |  ...|+.++|+.+|++.. ...++...-+
T Consensus       217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~-g~---~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa-~~g~~~A~~~  288 (452)
T 3e4b_A          217 DSVARVLGDATLGTPDEKTAQALLEKIA---P-GY---PASWVSLAQLLYDFPELGDVEQMMKYLDNGR-AADQPRAELL  288 (452)
T ss_dssp             HHHHHHHTCGGGSSCCHHHHHHHHHHHG---G-GS---THHHHHHHHHHHHSGGGCCHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHHHHhCCCCCCCCHHHHHHHHHHHc---C-CC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HCCCHHHHHH
Confidence            5555544322    58888888888877   2 22   2588888888 5  57888888888888887 5555554443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=87.06  E-value=0.37  Score=40.55  Aligned_cols=55  Identities=9%  Similarity=0.060  Sum_probs=46.1

Q ss_pred             CCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHhCCCHH
Q 023077          182 GMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRH----------ADCIALYKQLESNHPSKN  240 (287)
Q Consensus       182 GdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~----------EkAIALCQ~L~~~HPd~q  240 (287)
                      ++|.+|++.++.+++..|.+.    ++.+.+..+|...|+.          ++||+.|++-++-.|+.-
T Consensus        16 ~~feeA~~~~~~Ai~l~P~~a----ea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~   80 (158)
T 1zu2_A           16 LLFEQIRQDAENTYKSNPLDA----DNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD   80 (158)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             hHHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcH
Confidence            568999999999999777654    4888888899998875          599999999998888754

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=86.91  E-value=6.3  Score=36.81  Aligned_cols=68  Identities=16%  Similarity=0.026  Sum_probs=54.8

Q ss_pred             CCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCC----H-----HHHHHHHHHHHH
Q 023077          182 GMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEAN-NRHADCIALYKQLESNHPS----K-----NIRRQAADLRYI  251 (287)
Q Consensus       182 GdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~-Gq~EkAIALCQ~L~~~HPd----~-----qVRqQAKqLLyI  251 (287)
                      |+...|.++|++|+++.|....   .+.+..+..|... |+.+.|.+++++-..--|.    .     --|++|+.||..
T Consensus       218 Gd~ekA~~~ferAL~LnP~~~i---d~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~q~eA~~LL~~  294 (301)
T 3u64_A          218 GGMEKAHTAFEHLTRYCSAHDP---DHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVILSQKRARWLKAH  294 (301)
T ss_dssp             CCHHHHHHHHHHHHHHCCTTCS---HHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhCCCCCc---hHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHHHHHHHH
Confidence            9999999999999998876544   4899999999885 9999999999998833333    2     367888888865


Q ss_pred             h
Q 023077          252 L  252 (287)
Q Consensus       252 L  252 (287)
                      +
T Consensus       295 ~  295 (301)
T 3u64_A          295 V  295 (301)
T ss_dssp             H
T ss_pred             h
Confidence            4

>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*

Probab=86.84  E-value=1.2  Score=44.47  Aligned_cols=54  Identities=20%  Similarity=0.267  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADC  225 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkA  225 (287)
                      +...++.|+.||..|+|+-|.+++..++...|.+.    +|+.++|.||...|...+.
T Consensus       449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~----~a~~l~a~~~~~l~~~~~~  502 (658)
T 2cfu_A          449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNR----AARELQADALEQLGYQAEN  502 (658)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHHHHhccC
Confidence            67899999999999999999999999998777665    4999999999998865543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=85.62  E-value=2  Score=48.05  Aligned_cols=75  Identities=17%  Similarity=0.128  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023077          156 KVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN  235 (287)
Q Consensus       156 ~~a~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~  235 (287)
                      +.|.+-+++......-++-|.+-+..|+|.+||..++++      +.   ....+-++.+|+..|+.++||..|+.-.+.
T Consensus      1093 drAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD---~say~eVa~~~~~lGkyEEAIeyL~mArk~ 1163 (1630)
T 1xi4_A         1093 DRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DD---PSSYMEVVQAANTSGNWEELVKYLQMARKK 1163 (1630)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            346666777777788889999999999999999999885      22   246677899999999999999999876544


Q ss_pred             CCCH
Q 023077          236 HPSK  239 (287)
Q Consensus       236 HPd~  239 (287)
                      -|++
T Consensus      1164 ~~e~ 1167 (1630)
T 1xi4_A         1164 ARES 1167 (1630)
T ss_pred             cccc
Confidence            4444

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=82.63  E-value=3.3  Score=34.19  Aligned_cols=68  Identities=15%  Similarity=0.142  Sum_probs=58.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 023077          175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYIL  252 (287)
Q Consensus       175 G~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyIL  252 (287)
                      ....+.||+|..|..++++.|      ++   -+-=|+|.|--..|-..++-..--.|. ...+|+.++.|..+...+
T Consensus        47 ~sSLmNrG~Yq~Al~l~~~~c------~p---dlepw~ALce~rlGl~s~le~rL~~la-~sg~p~~q~Fa~g~req~  114 (116)
T 2p58_C           47 LSSLMNRGDYASALQQGNKLA------YP---DLEPWLALCEYRLGLGSALESRLNRLA-RSQDPRIQTFVNGMREQL  114 (116)
T ss_dssp             HHHHHHTTCHHHHHHHHTTSC------CG---GGHHHHHHHHHHHTCHHHHHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHcchhHHHHHHhcCCCC------Cc---hHHHHHHHHHHhcccHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHh
Confidence            345688999999999999977      33   267799999999999999999998898 899999999998887654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=82.52  E-value=0.95  Score=42.43  Aligned_cols=80  Identities=14%  Similarity=-0.012  Sum_probs=45.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhC--------CCC-CCchHHHHH--------HHHHHHHHcCChHHHHHHHHHHH-
Q 023077          172 FELGQKAYGKGMYGRAIEFLEGALTII--------PRP-TFFGGEIQI--------WLAMAYEANNRHADCIALYKQLE-  233 (287)
Q Consensus       172 yeaG~aALerGdY~qAIelLE~Ale~~--------~~~-S~lGGEAQm--------wLAtAYqa~Gq~EkAIALCQ~L~-  233 (287)
                      -+.|..|+++|++..|+..|..+-...        ..+ ..+.--+.+        .-..+|...|+.++|+.+|+.+- 
T Consensus       685 ~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~~  764 (814)
T 3mkq_A          685 RALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKSQR  764 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence            466888888888888888877641110        000 000000111        12446777888888888887653 


Q ss_pred             --------HhCCCHH------HHHHHHHHHHH
Q 023077          234 --------SNHPSKN------IRRQAADLRYI  251 (287)
Q Consensus       234 --------~~HPd~q------VRqQAKqLLyI  251 (287)
                              ++|..++      +++||+.|...
T Consensus       765 ~~~A~~lA~~~~~~~~~i~~~~~~~~~~L~~~  796 (814)
T 3mkq_A          765 FSEAAFLGSTYGLGDNEVNDIVTKWKENLILN  796 (814)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHhCCChHHHHHHHHHHHHHHHhc
Confidence                    2344344      46777776543

>2xrh_A Protein HP0721; unknown function; 1.50A {Helicobacter pylori}

Probab=82.35  E-value=5.5  Score=32.19  Aligned_cols=76  Identities=18%  Similarity=0.326  Sum_probs=43.5

Q ss_pred             cccccCCCCCCccc--CCCCCCCcccccHHHHHHHHHHHH--HHHHHHHHHHHH-HhhhhhccCcchhhhhhhHHHHHHH
Q 023077           75 VNAVDFDAGSSDEE--NGNGNGEKEEYDWEKEMRRRVKEI--EEMRELEKKAEE-LQSKAEEDDSESEAKEETEEEKRMR  149 (287)
Q Consensus        75 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~r  149 (287)
                      .||.||+.-+.+|=  --|--.|.++.|+..|+.+|++..  ++.+..-++..+ +++-++-=.      -+.=.++|.-
T Consensus         6 ~~a~DFSk~Sd~ELl~mAG~V~p~~~~dY~mEv~KR~~~M~~k~~k~F~~~~~~~~~kN~~kMS------~ke~~~~r~a   79 (100)
T 2xrh_A            6 TMAKDFSKTSDEDLAKMAGVVAPQDIVDYTKELKKRMEKMPEDKRKAFHKQLHEYATKNTDKMT------VADFEARQKA   79 (100)
T ss_dssp             CCCCSSTTSCHHHHHHTTTTSCGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTSC------HHHHHHHHHH
T ss_pred             hcccchhhcCHHHHHHHHCcCChhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhCC------HHHHHHHHHH
Confidence            58999985544443  345556778899999999999864  333333333322 222222222      2222455556


Q ss_pred             HHHHHHH
Q 023077          150 VRRELEK  156 (287)
Q Consensus       150 v~~~L~~  156 (287)
                      |+..|++
T Consensus        80 I~eal~k   86 (100)
T 2xrh_A           80 VKEALKK   86 (100)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666655

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=81.23  E-value=3.2  Score=34.29  Aligned_cols=68  Identities=18%  Similarity=0.148  Sum_probs=58.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 023077          175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYIL  252 (287)
Q Consensus       175 G~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyIL  252 (287)
                      ....+.||+|..|..++++.|      ++   -+-=|+|.|--..|-..++-..--.|. ...+|+.++.|..+...+
T Consensus        46 ~sSLmNrG~Yq~Al~l~~~~c------~p---dlepw~ALce~rlGl~s~le~rL~~la-~sg~p~~q~Fa~g~req~  113 (115)
T 2uwj_G           46 ISSLANQGRYQEALAFAHGNP------WP---ALEPWFALCEWHLGLGAALDRRLAGLG-GSSDPALADFAAGMRAQV  113 (115)
T ss_dssp             HHHHHHTTCHHHHHGGGTTCC------CG---GGHHHHHHHHHHTTCHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHcchhHHHHHHhcCCCC------Cc---hHHHHHHHHHHhcccHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHh
Confidence            345688999999999999976      33   267799999999999999999998998 899999999998887654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=81.22  E-value=2.8  Score=40.52  Aligned_cols=69  Identities=9%  Similarity=-0.038  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHh
Q 023077          167 TAQLMFELGQKAYGKGMYG-RAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR----------HADCIALYKQLESN  235 (287)
Q Consensus       167 ~ae~~yeaG~aALerGdY~-qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq----------~EkAIALCQ~L~~~  235 (287)
                      .+...+....+....|.|. +|++.++.++...|.+..    |..+-..++...|+          .++|+.+|..++..
T Consensus        27 ~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~t----aW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~  102 (567)
T 1dce_A           27 LYQSATQAVFQKRQAGELDESVLELTSQILGANPDFAT----LWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV  102 (567)
T ss_dssp             HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHH----HHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh
Confidence            3444445555566778776 669999999997777665    88888899999999          89999999999988


Q ss_pred             CCCH
Q 023077          236 HPSK  239 (287)
Q Consensus       236 HPd~  239 (287)
                      +|..
T Consensus       103 ~pK~  106 (567)
T 1dce_A          103 NPKS  106 (567)
T ss_dssp             CTTC
T ss_pred             CCCC
Confidence            8864

>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1

Probab=80.31  E-value=6.9  Score=33.34  Aligned_cols=84  Identities=13%  Similarity=0.051  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--CCchHHHHHH-HHHH--HHHcCChHHHHHHHHHHHH---hCCC
Q 023077          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP--TFFGGEIQIW-LAMA--YEANNRHADCIALYKQLES---NHPS  238 (287)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~--S~lGGEAQmw-LAtA--Yqa~Gq~EkAIALCQ~L~~---~HPd  238 (287)
                      +....|..|+..|..|+|-.|=+.||.+....+..  .+.--+..|+ +|.|  ....|+..-|..++++-..   .+|.
T Consensus        31 ~~~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~~~  110 (161)
T 2ijq_A           31 TLRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVPN  110 (161)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSCT
T ss_pred             CccHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC
Confidence            34567999999999999999999999999877655  3333455555 5555  4567999999999986542   3443


Q ss_pred             H-------HHHHHHHHHHH
Q 023077          239 K-------NIRRQAADLRY  250 (287)
Q Consensus       239 ~-------qVRqQAKqLLy  250 (287)
                      .       .++.+++.++.
T Consensus       111 ~~~GIDv~~L~~~~~~~l~  129 (161)
T 2ijq_A          111 DYYGVDLLDVRTTVTNALS  129 (161)
T ss_dssp             TGGGBCHHHHHHHHHHHHH
T ss_pred             ccCCcCHHHHHHHHHHHhh
Confidence            2       45777777754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	287
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.001

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 10/66 (15%), Positives = 17/66 (25%), Gaps = 4/66 (6%)

Query: 172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQ 231
            EL  + Y  G +  A           P  T     + + L+  +    R          
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNT----GVLLLLSSIHFQCRRLDRSAHFSTL 58

Query: 232 LESNHP 237
               +P
Sbjct: 59  AIKQNP 64

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	287
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.75
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.44
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.37
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.29
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.24
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.22
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.19
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.14
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.14
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.07
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.07
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.06
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.06
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.01
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.91
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.89
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.88
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.87
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.82
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	97.79
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.75
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	97.7
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.68
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.63
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.61
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.58
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.57
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	97.51
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.49
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.49
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.46
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	97.19
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.14
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	96.69
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	96.48
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	96.36
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.27
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	96.26
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	96.11
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	96.01
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	95.76
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	95.68
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	95.55
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	94.87
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	94.21
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	93.97
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	93.69
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	92.79
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	92.23
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	90.47
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	88.41
d2ijqa1	145	Hypothetical protein rrnAC1037 {Haloarcula marismo	88.33
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	88.11
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	87.18
d2cfua2	505	Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI	86.53
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	84.73
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	80.56

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=4.2e-08  Score=71.51  Aligned_cols=73  Identities=25%  Similarity=0.262  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP---TFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~---S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (287)
                      +..-|+.|..+|++|+|.+||.+|+.|+...+.+   ...-+++...|+.+|...|+.++||..|++..+-.|+..
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~   80 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ   80 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCH
Confidence            5667999999999999999999999999876543   222357888999999999999999999999887888754

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.44  E-value=2.9e-07  Score=70.36  Aligned_cols=67  Identities=18%  Similarity=0.103  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      ++...+.|-.+|.+|+|..||.+|++++...|.+.    .+...++.+|...|+.++||..|++.+.-.|+
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~----~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~   70 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA----VYYTNRALCYLKMQQPEQALADCRRALELDGQ   70 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC
Confidence            34466777777888888888888877777666543    36777777777777777777777777755554

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=6.8e-07  Score=66.49  Aligned_cols=69  Identities=16%  Similarity=0.107  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      +++...+.|..+|..|+|..||..|..++...|.+.    .+...++.+|...|+.++|+..|...+...|+-
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~   70 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH----VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW   70 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcch----hhhhcccccccccccccccchhhhhHHHhccch
Confidence            345567788888888888888888888888655443    488888888888888888888888887666653

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=2.4e-06  Score=65.42  Aligned_cols=71  Identities=14%  Similarity=0.060  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIR  242 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd-~qVR  242 (287)
                      +...+..|...+..|+|..|++.|+++++..|.+.    ++.+.++.+|...|+.++|+..|++....+|+ +.+.
T Consensus        44 ~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~----~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~  115 (159)
T d1a17a_          44 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI----KGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAK  115 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             hhhhhhhHHHHHhccccchHHHHHHHHHHHcccch----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Confidence            34455667777777777777777777777554433    47888888888888888888888888866765 4433

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.24  E-value=2e-06  Score=63.55  Aligned_cols=66  Identities=15%  Similarity=0.067  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      ..|..|...+.+|+|..|+..|++++...|.+    ..+.++|+.+|...|+.++|+..+++.+.-+|+-
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   83 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPER----EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD   83 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhccccccc----chhhhhhhhhhhhhhhHHHhhccccccccccccc
Confidence            35889999999999999999999999977765    3699999999999999999999999988788874

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.22  E-value=5.3e-06  Score=64.76  Aligned_cols=78  Identities=14%  Similarity=0.117  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchH-----------HHHHHHHHHHHHcCChHHHHHHHH
Q 023077          162 AERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGG-----------EIQIWLAMAYEANNRHADCIALYK  230 (287)
Q Consensus       162 a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGG-----------EAQmwLAtAYqa~Gq~EkAIALCQ  230 (287)
                      .++++.++...+.|..+|..|+|..||..+..|+...+.......           .+.+-++.||...|+.++||..|.
T Consensus         9 ~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~   88 (168)
T d1kt1a1           9 KEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCD   88 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhh
Confidence            456678888999999999999999999999999988876665433           223448999999999999999999


Q ss_pred             HHHHhCCCH
Q 023077          231 QLESNHPSK  239 (287)
Q Consensus       231 ~L~~~HPd~  239 (287)
                      +....+|+.
T Consensus        89 ~al~l~p~~   97 (168)
T d1kt1a1          89 KALGLDSAN   97 (168)
T ss_dssp             HHHHHCTTC
T ss_pred             hhhhcccch
Confidence            999778864

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=1.6e-05  Score=62.44  Aligned_cols=71  Identities=20%  Similarity=0.033  Sum_probs=43.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CHHHHHHHHHH
Q 023077          174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP-SKNIRRQAADL  248 (287)
Q Consensus       174 aG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP-d~qVRqQAKqL  248 (287)
                      .|...+..|+|..|+..++.++...|.+.    .+.+.++.+|...|+.++|+..|++..+-.| |+.++..-..+
T Consensus        68 la~~y~k~~~~~~A~~~~~~al~~~p~~~----~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~  139 (170)
T d1p5qa1          68 LAMCHLKLQAFSAAIESCNKALELDSNNE----KGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC  139 (170)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHhhhhcccccchhhhhhhccccch----hhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            44445666666666666666666555443    3666677777777777777777776665565 45554443333

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.14  E-value=9.8e-06  Score=62.62  Aligned_cols=79  Identities=16%  Similarity=0.032  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHH
Q 023077          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIRRQAADL  248 (287)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd-~qVRqQAKqL  248 (287)
                      ..++.|...+..|+|.+||..+..++...|.+.    ++.+.++.||...|+.++|+..|++..+-+|+ ++++..-..+
T Consensus        69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~----ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~  144 (153)
T d2fbna1          69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNV----KALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC  144 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHhhHHHHHHHhcccchhhhhhhccccccchhh----hhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            467889999999999999999999999877665    59999999999999999999999999988874 6666655554


Q ss_pred             HHHh
Q 023077          249 RYIL  252 (287)
Q Consensus       249 LyIL  252 (287)
                      ...|
T Consensus       145 ~~kl  148 (153)
T d2fbna1         145 VNKL  148 (153)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=5.6e-06  Score=65.03  Aligned_cols=65  Identities=15%  Similarity=0.125  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      ..+..|...+..|+|.+||..|+.++...|.+.    .+.+.|+.+|...|+.++|+..|+..++..|+
T Consensus        73 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  137 (259)
T d1xnfa_          73 VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN----YAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN  137 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhh----hhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc
Confidence            344555555555666666666655555544332    25555555566666666666666555545544

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=3e-06  Score=67.39  Aligned_cols=67  Identities=16%  Similarity=0.198  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      ....+..|...+..|+|.+|+..|+.+++..|.+    ..+.+.|+.+|...|+.++|+..|+......|.
T Consensus        33 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~   99 (388)
T d1w3ba_          33 TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL----AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD   99 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHhhhhccccccccccccccccccc
Confidence            3344555666666666666666666666654433    235566666666666666666666666544443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=5e-06  Score=62.50  Aligned_cols=64  Identities=22%  Similarity=0.224  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 023077          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES  234 (287)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~  234 (287)
                      .|...-+.|...|.+|+|.+||..|..++...|.+.    .+...++.+|...|+.++|+..|++.++
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~   66 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM----TYITNQAAVYFEKGDYNKCRELCEKAIE   66 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH----HHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence            355566899999999999999999999999877653    4899999999999999999999999664

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.06  E-value=1.7e-05  Score=61.17  Aligned_cols=77  Identities=18%  Similarity=0.163  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchH------------HHHHHHHHHHHHcCChHHHHHHHH
Q 023077          163 ERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGG------------EIQIWLAMAYEANNRHADCIALYK  230 (287)
Q Consensus       163 ~~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGG------------EAQmwLAtAYqa~Gq~EkAIALCQ  230 (287)
                      ++++.+....+.|-.+|.+|+|..||..+..++...+.......            .+..-++.+|...|+.++|+..|+
T Consensus        12 e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~   91 (153)
T d2fbna1          12 EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHAS   91 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhh
Confidence            56677888889999999999999999999999987764433211            244559999999999999999999


Q ss_pred             HHHHhCCCH
Q 023077          231 QLESNHPSK  239 (287)
Q Consensus       231 ~L~~~HPd~  239 (287)
                      ..+..+|+.
T Consensus        92 ~al~~~p~~  100 (153)
T d2fbna1          92 KVLKIDKNN  100 (153)
T ss_dssp             HHHHHSTTC
T ss_pred             ccccccchh
Confidence            988788754

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=6e-06  Score=66.97  Aligned_cols=65  Identities=20%  Similarity=0.245  Sum_probs=57.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      .|+.|...+.+|+|..|+..|++++...|.+    ..+...|+.+|...|+.++|+..|++..+.+|+.
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   86 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH----MEAWQYLGTTQAENEQELLAISALRRCLELKPDN   86 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHhhhcccccc
Confidence            5788999999999999999999999866554    3599999999999999999999999988777764

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=2.7e-05  Score=60.99  Aligned_cols=54  Identities=13%  Similarity=0.108  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADC  225 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkA  225 (287)
                      +...+..|...+..|+|.+|+..|+.++...|.+.    .++..|+.++...++..+.
T Consensus        96 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~----~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1          96 EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK----AAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH----HHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHHHHHHH
Confidence            66788899999999999999999999999877543    4777788887776655543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=5.6e-05  Score=57.58  Aligned_cols=73  Identities=12%  Similarity=0.036  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          163 ERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       163 ~~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      .-++.|+...+.|-..|.+|+|..|+..|.+++...|.+    ..+.+.++.+|...|+.++|+..|++.++-.|+.
T Consensus         5 ~~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~   77 (159)
T d1a17a_           5 GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY   77 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhh----hhhhhhhHHHHHhccccchHHHHHHHHHHHcccc
Confidence            345677888899999999999999999999999987654    3599999999999999999999999998667764

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=4.9e-05  Score=56.89  Aligned_cols=85  Identities=15%  Similarity=0.209  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCc---hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF---GGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ  244 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~l---GGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQ  244 (287)
                      +...+..|...+..|+|..||+.++.++...|.+...   -+++.+-|+.+|.+.|+.++|+.+|++-...||++++...
T Consensus        38 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~  117 (128)
T d1elra_          38 MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKK  117 (128)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             HHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHH
Confidence            4567888999999999999999999999987765443   2567888999999999999999999887668999998877


Q ss_pred             HHHHHHHh
Q 023077          245 AADLRYIL  252 (287)
Q Consensus       245 AKqLLyIL  252 (287)
                      ..++-.+|
T Consensus       118 l~~~~k~l  125 (128)
T d1elra_         118 CQQAEKIL  125 (128)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            76665554

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.88  E-value=6.3e-05  Score=58.00  Aligned_cols=73  Identities=18%  Similarity=0.188  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIRRQ  244 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd-~qVRqQ  244 (287)
                      +...++.|..-+..|+|.+||..+..|++..|.+.    .+.+.++.||...|+.++|+..|++..+-.|+ +.+...
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~----~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~  150 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNT----KALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAE  150 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhh----hHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            45567789999999999999999999999776544    59999999999999999999999999977765 344433

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=3.5e-05  Score=56.90  Aligned_cols=68  Identities=19%  Similarity=0.036  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      +...+..|...+.+|+|..||..++.++...|.+..    +.+.++.+|...|+.++|+..|++.++..|+.
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~  104 (117)
T d1elwa_          37 HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK----GYSRKAAALEFLNRFEEAKRTYEEGLKHEANN  104 (117)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred             hhhhhcccccccccccccccchhhhhHHHhccchhh----HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence            556788899999999999999999999998776554    99999999999999999999999999777774

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.82  E-value=1.6e-05  Score=60.37  Aligned_cols=66  Identities=12%  Similarity=-0.030  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (287)
                      +...+..|...+..|+|..||..|++|+++.|.+.    .+.+.|+.+|...|+.++|+..|++...-.|
T Consensus        38 ~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~----~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p  103 (201)
T d2c2la1          38 AVYYTNRALCYLKMQQPEQALADCRRALELDGQSV----KAHFFLGQCQLEMESYDEAIANLQRAYSLAK  103 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence            55677889999999999999999999999766553    5899999999999999999999998764333

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=2.9e-05  Score=61.55  Aligned_cols=67  Identities=18%  Similarity=0.252  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      ....+..|...+..|+|.+|+..|+++++..|.+    ..+.+.|+.+|...|+.++|+..|++..+-+|+
T Consensus       305 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~  371 (388)
T d1w3ba_         305 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF----AAAHSNLASVLQQQGKLQEALMHYKEAIRISPT  371 (388)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTC----HHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred             chhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            3456677888999999999999999999866544    468999999999999999999999998867775

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.75  E-value=0.00016  Score=58.13  Aligned_cols=80  Identities=16%  Similarity=0.166  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH-------hCCCHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES-------NHPSKN  240 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~-------~HPd~q  240 (287)
                      .......+...+..|+|.+||..|+.++...|.+-.    +...|..+|.+.|+..+|+..|+++..       -.|.++
T Consensus        67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~----~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~  142 (179)
T d2ff4a2          67 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREP----LWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT  142 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH----HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred             HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHH----HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence            344667799999999999999999999998876655    999999999999999999999998732       468888


Q ss_pred             HHHHHHHHHHH
Q 023077          241 IRRQAADLRYI  251 (287)
Q Consensus       241 VRqQAKqLLyI  251 (287)
                      ++.-...+|.-
T Consensus       143 l~~l~~~il~~  153 (179)
T d2ff4a2         143 LRALNERILRQ  153 (179)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHhC
Confidence            87777766543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=97.70  E-value=0.0002  Score=55.87  Aligned_cols=69  Identities=20%  Similarity=0.239  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      .+...|..|...+..|+|..|++.|++++...|.+.    .+...|+.+|...|+.++|+..|++.++.+|+.
T Consensus        36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  104 (259)
T d1xnfa_          36 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP----EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY  104 (259)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCH----HHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhh
Confidence            466789999999999999999999999999877653    589999999999999999999999999888864

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.68  E-value=0.00017  Score=55.95  Aligned_cols=69  Identities=13%  Similarity=0.068  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (287)
                      ....++.|..-+..|+|..||..++.++...|.+.    .+.+.++++|...|+.++|+..|++...-+|+..
T Consensus        64 ~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~----~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~  132 (168)
T d1kt1a1          64 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANE----KGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK  132 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH
T ss_pred             HHHHHhHHHHHHHhhhcccchhhhhhhhhcccchH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            44566789999999999999999999999877664    4999999999999999999999999997676543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=4.6e-05  Score=58.07  Aligned_cols=78  Identities=18%  Similarity=0.170  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHH
Q 023077          168 AQLMFELGQKAYG---KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ  244 (287)
Q Consensus       168 ae~~yeaG~aALe---rGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQ  244 (287)
                      .+..|+-|...+.   .++|.+||.+|++++...+.+..  ..+.+.|+.+|...|+.++|+..|++..+-.|+-.   +
T Consensus        33 ~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~--~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~---~  107 (122)
T d1nzna_          33 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQ--RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN---Q  107 (122)
T ss_dssp             HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---H
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchH--HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCH---H
Confidence            3456677777665   45667899999999985543322  35889999999999999999999999998888764   4


Q ss_pred             HHHHHH
Q 023077          245 AADLRY  250 (287)
Q Consensus       245 AKqLLy  250 (287)
                      |..++.
T Consensus       108 A~~l~~  113 (122)
T d1nzna_         108 AKELER  113 (122)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            445444

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.61  E-value=7.5e-05  Score=64.04  Aligned_cols=66  Identities=14%  Similarity=0.065  Sum_probs=58.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHH
Q 023077          175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ  244 (287)
Q Consensus       175 G~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQ  244 (287)
                      ++.||.+|+|.+||+.|+.++...|.+..    ++..|+.+|...|+.++|++.|+.....+|+....-+
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~----ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~   68 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDAS----LRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS   68 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHH----HHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence            67899999999999999999997776655    9999999999999999999999999988887654433

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.58  E-value=0.00029  Score=56.62  Aligned_cols=75  Identities=23%  Similarity=0.126  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCc------------------hHHHHHHHHHHHHHcCChHHHHH
Q 023077          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF------------------GGEIQIWLAMAYEANNRHADCIA  227 (287)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~l------------------GGEAQmwLAtAYqa~Gq~EkAIA  227 (287)
                      ..|+..+..|..++.+|++..|++.|..|+...+..-..                  ..++...++.+|...|+.++|+.
T Consensus         9 ~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~   88 (179)
T d2ff4a2           9 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA   88 (179)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence            467889999999999999999999999999987644221                  12677889999999999999999


Q ss_pred             HHHHHHHhCCCHH
Q 023077          228 LYKQLESNHPSKN  240 (287)
Q Consensus       228 LCQ~L~~~HPd~q  240 (287)
                      +|+.++..+|..+
T Consensus        89 ~~~~al~~~P~~e  101 (179)
T d2ff4a2          89 ELEALTFEHPYRE  101 (179)
T ss_dssp             HHHHHHHHSTTCH
T ss_pred             HHHHHHHhCCccH
Confidence            9999998999755

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.57  E-value=7.7e-05  Score=54.73  Aligned_cols=62  Identities=18%  Similarity=0.137  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      +...+..|...+..|+|.+||..|+++++..|.+.    .+.+.|+.+|...|+.++|+..+++..
T Consensus        50 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          50 EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI----AVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhhhhhhhhhHHHhhcccccccccccccc----cchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            55678889999999999999999999999877754    599999999999999999999998764

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=0.00016  Score=57.75  Aligned_cols=65  Identities=11%  Similarity=0.086  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      +-..|+.|..++++|+|..||+.|+.+   .+++    ..+.+.|+.+|...|+.++|+..|++-++..|+.
T Consensus         5 ~~~l~~~g~~~~~~~d~~~Al~~~~~i---~~~~----~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~   69 (192)
T d1hh8a_           5 AISLWNEGVLAADKKDWKGALDAFSAV---QDPH----SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL   69 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTS---SSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhc---CCCC----HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhh
Confidence            334556666666666666666666542   1221    2456666666666666666666666665555543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=0.00079  Score=52.02  Aligned_cols=63  Identities=21%  Similarity=0.070  Sum_probs=52.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC-chHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF-FGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~-lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      ..-.|..++.+|+|.+|++++++++...|.+.. .-..+...|+.+|...|+.++|+.+|+...
T Consensus        15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~   78 (366)
T d1hz4a_          15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE   78 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            334588999999999999999999997775533 234678889999999999999999999865

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.49  E-value=0.00031  Score=53.63  Aligned_cols=69  Identities=16%  Similarity=0.009  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCc--------hHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF--------GGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~l--------GGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      ...+-..+..|...|..|+|.+||+.+++++++.+.....        -..+..-++.||...|+.++|+..|+.-.
T Consensus         6 ~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al   82 (156)
T d2hr2a1           6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL   82 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence            3446667788999999999999999999999987755432        13466678999999999999999998876

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=0.00025  Score=57.09  Aligned_cols=67  Identities=13%  Similarity=0.084  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      +...+..|...+..|+|.+|++.|+++++..|.+    ..+.+.|+.+|...|+.++||..|++.++-+|+
T Consensus       206 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  272 (323)
T d1fcha_         206 YLLWNKLGATLANGNQSEEAVAAYRRALELQPGY----IRSRYNLGISCINLGAHREAVEHFLEALNMQRK  272 (323)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred             ccchhhhhhcccccccchhHHHHHHHHHHHhhcc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence            5556677778888888888888888888765443    357777888888888888888888777654554

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00078  Score=53.52  Aligned_cols=61  Identities=11%  Similarity=-0.015  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      ...|..|..-+..|+|..|++.|++|++..|..    ..+...++++|...|+.++|+..|++..
T Consensus        37 ~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~----~~a~~~~g~~~~~~g~~~~A~~~~~kAl   97 (192)
T d1hh8a_          37 RICFNIGCMYTILKNMTEAEKAFTRSINRDKHL----AVAYFQRGMLYYQTEKYDLAIKDLKEAL   97 (192)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhh----hhhHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            347899999999999999999999999977655    3499999999999999999999999876

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.14  E-value=0.00052  Score=52.64  Aligned_cols=70  Identities=9%  Similarity=0.023  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------------CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023077          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRP------------TFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (287)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~------------S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (287)
                      .....|...+.+|+|..||..+.+++...+..            .+.-..+.+-|+.+|...|+.++||..|.+.+.-+|
T Consensus        29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p  108 (169)
T d1ihga1          29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP  108 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhh
Confidence            34567888999999999999999988644311            122335667789999999999999999999996677


Q ss_pred             CH
Q 023077          238 SK  239 (287)
Q Consensus       238 d~  239 (287)
                      +.
T Consensus       109 ~~  110 (169)
T d1ihga1         109 SN  110 (169)
T ss_dssp             TC
T ss_pred             hh
Confidence            64

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.69  E-value=0.0015  Score=52.00  Aligned_cols=79  Identities=9%  Similarity=-0.015  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHH
Q 023077          167 TAQLMFELGQKAYGK---GMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRR  243 (287)
Q Consensus       167 ~ae~~yeaG~aALer---GdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRq  243 (287)
                      +.+..|+-|-.....   .+.+.+|.+|+.++...|...   -...+.|+++|...|+.++|...|+.+.+.-|+-....
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~---rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~  110 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR---RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  110 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHH
Confidence            366788888888755   455799999999998654332   26899999999999999999999999998888875544


Q ss_pred             HHHHH
Q 023077          244 QAADL  248 (287)
Q Consensus       244 QAKqL  248 (287)
                      ..+++
T Consensus       111 ~L~~~  115 (124)
T d2pqrb1         111 ALKSM  115 (124)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.48  E-value=0.0031  Score=51.76  Aligned_cols=73  Identities=19%  Similarity=0.176  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCCC--CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077          168 AQLMFELGQKAYG-KGMYGRAIEFLEGALTIIPR--PTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (287)
Q Consensus       168 ae~~yeaG~aALe-rGdY~qAIelLE~Ale~~~~--~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (287)
                      +...+..|...+. .|+|..||+++++++...+.  +....+.+..-++.+|...|+.++|+.+|++++..+|...
T Consensus       117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~  192 (290)
T d1qqea_         117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR  192 (290)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccch
Confidence            4445555655545 49999999999999876553  3444577888999999999999999999999996665543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=96.36  E-value=0.022  Score=44.88  Aligned_cols=67  Identities=16%  Similarity=0.221  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA----NNRHADCIALYKQLESNHPSKNI  241 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa----~Gq~EkAIALCQ~L~~~HPd~qV  241 (287)
                      ++..|..|..++.+|||.+|+++|+++++.   +   -..+++.|+..|..    ..+..+|+.+++... ..-++..
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~---g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~-~~~~~~a   72 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---K---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC-DLNYSNG   72 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTTCHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---C---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccc-cccccch
Confidence            356889999999999999999999999873   1   23689999999987    568888999999887 4435443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.27  E-value=0.0053  Score=46.48  Aligned_cols=66  Identities=18%  Similarity=0.121  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC-------chHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF-------FGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~-------lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      +......|..-+..|+|..|+..++.++...+....       ....+.+-++.+|...|+.++|+..|++-.
T Consensus        55 a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al  127 (156)
T d2hr2a1          55 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV  127 (156)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            344567889999999999999999999986553222       234567889999999999999999999855

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.26  E-value=0.019  Score=51.48  Aligned_cols=80  Identities=15%  Similarity=0.132  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH-HhCCCHHHHHHH
Q 023077          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE-SNHPSKNIRRQA  245 (287)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~-~~HPd~qVRqQA  245 (287)
                      -....+..|..+..+|+|..|+.++.+|+...|.+.    .++..|+..|...|+..+|+..|.+-. -.+|.+..+..-
T Consensus       151 ~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~----~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL  226 (497)
T d1ya0a1         151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG----QPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNL  226 (497)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS----HHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCch----HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            345677889999999999999999999999776554    499999999999999999999887654 357777777776


Q ss_pred             HHHHH
Q 023077          246 ADLRY  250 (287)
Q Consensus       246 KqLLy  250 (287)
                      ..++.
T Consensus       227 ~~~~~  231 (497)
T d1ya0a1         227 QKALS  231 (497)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=96.11  E-value=0.014  Score=44.68  Aligned_cols=60  Identities=15%  Similarity=-0.001  Sum_probs=28.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCC--CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077          174 LGQKAYGKGMYGRAIEFLEGALTIIP--RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (287)
Q Consensus       174 aG~aALerGdY~qAIelLE~Ale~~~--~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (287)
                      .|...+..|+|..|+.+|+.++....  ...+.-..+.+.|+.+|...|+.++|+..+++-.
T Consensus       257 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al  318 (366)
T d1hz4a_         257 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL  318 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            34444555555555555555444332  2222233444445555555555555555555444

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.0041  Score=52.49  Aligned_cols=68  Identities=9%  Similarity=-0.063  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      ++..+..|..-...|+|.+||+.|.+++...|.+..    +...++.+|...|+.++|+..|++.+..+|+-
T Consensus       112 ~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~----a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n  179 (315)
T d2h6fa1         112 YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYH----AWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN  179 (315)
T ss_dssp             HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred             hhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchH----HHHHHHHHHHHHHhhHHHHHHHHHHHHHCCcc
Confidence            667788899999999999999999999998877755    89999999999999999999999999888863

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.76  E-value=0.046  Score=44.51  Aligned_cols=74  Identities=8%  Similarity=-0.005  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCch---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFG---GEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI  241 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lG---GEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV  241 (287)
                      +...+..|...+..|+|.+|+..+++++...+......   ..+...++.+|...|+..+|+..++...+.+|...-
T Consensus       158 ~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~  234 (290)
T d1qqea_         158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD  234 (290)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred             hhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccc
Confidence            45577789999999999999999999998766543221   244566788899999999999999998866665433

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.68  E-value=0.01  Score=45.11  Aligned_cols=60  Identities=22%  Similarity=0.199  Sum_probs=48.8

Q ss_pred             cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHhCCCHHHHHH
Q 023077          181 KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR-----------HADCIALYKQLESNHPSKNIRRQ  244 (287)
Q Consensus       181 rGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq-----------~EkAIALCQ~L~~~HPd~qVRqQ  244 (287)
                      .+.|.+||+.|++|+++.|.+..    +.+.|+.+|...|+           .++|+..|++.++-.|+-.+-..
T Consensus        54 ~~~~~~Ai~~~~kAl~l~P~~~~----a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~  124 (145)
T d1zu2a1          54 KQMIQEAITKFEEALLIDPKKDE----AVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLK  124 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcchhhH----HHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHH
Confidence            35578999999999998776644    89999999987765           58999999999988988765443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.0076  Score=45.32  Aligned_cols=61  Identities=8%  Similarity=-0.036  Sum_probs=49.1

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHhCCCHH
Q 023077          176 QKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRH---ADCIALYKQLESNHPSKN  240 (287)
Q Consensus       176 ~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~---EkAIALCQ~L~~~HPd~q  240 (287)
                      -..+..++|.+|.+.|++++...|.+.    ++++-++++|...++.   ++||.+|+++....|++.
T Consensus         7 n~~~~~~~l~~Ae~~Y~~aL~~~p~~~----~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~   70 (122)
T d1nzna_           7 NELVSVEDLLKFEKKFQSEKAAGSVSK----STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE   70 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCCCH----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHH
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCch
Confidence            355678899999999999999666644    4999999999876655   569999999985566654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.87  E-value=0.048  Score=45.66  Aligned_cols=68  Identities=3%  Similarity=-0.034  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077          168 AQLMFELGQKAYGKG-MYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       168 ae~~yeaG~aALerG-dY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      +..-+..|......| +|..|+.++++++...|.+.    ++...++.+|...|+.++||.+|.+.+..+|+.
T Consensus        77 ~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~----~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n  145 (315)
T d2h6fa1          77 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY----QVWHHRRVLVEWLRDPSQELEFIADILNQDAKN  145 (315)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred             hHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhh----hHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcc
Confidence            445566677766655 69999999999999766554    499999999999999999999999999777764

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.21  E-value=0.016  Score=47.43  Aligned_cols=60  Identities=12%  Similarity=-0.048  Sum_probs=49.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077          175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       175 G~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      |......|+|..|+..|.+++...    +-...+.+.|+.+|...|+.++|+..|++++...|+
T Consensus       249 ~~~~~~~~~~~~a~~~~~~~~~~~----p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~  308 (334)
T d1dcea1         249 VEKSTVLQSELESCKELQELEPEN----KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM  308 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhhC----chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcc
Confidence            445566789999999999988743    344579999999999999999999999999966663

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=93.97  E-value=0.074  Score=44.82  Aligned_cols=71  Identities=15%  Similarity=-0.019  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCc-------------------------------hHHHHHHHHHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF-------------------------------GGEIQIWLAMAY  216 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~l-------------------------------GGEAQmwLAtAY  216 (287)
                      +...+..|+..+..|+|.+|++.|+.+++..|.....                               .-...+.++.++
T Consensus        30 ~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~  109 (264)
T d1zbpa1          30 ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLS  109 (264)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHH
Confidence            4567778888899999999999999988876644321                               114455566667


Q ss_pred             HHcCChHHHHHHHHHHHHhCCC
Q 023077          217 EANNRHADCIALYKQLESNHPS  238 (287)
Q Consensus       217 qa~Gq~EkAIALCQ~L~~~HPd  238 (287)
                      ...|+.++|+++|+++.+..|+
T Consensus       110 ~~~gd~~~A~~~~~~a~e~~p~  131 (264)
T d1zbpa1         110 MVSQDYEQVSELALQIEELRQE  131 (264)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCCC
T ss_pred             HhCCCHHHHHHHHHHHHhcCCC
Confidence            7777777777777777655543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.69  E-value=0.025  Score=42.94  Aligned_cols=55  Identities=9%  Similarity=-0.020  Sum_probs=45.1

Q ss_pred             cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHH----------cCChHHHHHHHHHHHHhCCCH
Q 023077          181 KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA----------NNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       181 rGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa----------~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      .+.|.+|+..|+++++..|.+..    +.+.+..+|..          .++.++||..|++.++-.|+.
T Consensus        10 ~~~fe~A~~~~e~al~~~P~~~~----~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~   74 (145)
T d1zu2a1          10 ILLFEQIRQDAENTYKSNPLDAD----NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK   74 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HccHHHHHHHHHHHHhhCCcchH----HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchh
Confidence            35689999999999998877765    88888888864          455689999999998778864

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=92.79  E-value=0.12  Score=45.20  Aligned_cols=68  Identities=21%  Similarity=0.126  Sum_probs=53.0

Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 023077          177 KAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRY  250 (287)
Q Consensus       177 aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLy  250 (287)
                      .|+..|++..++.++...    +.......+.++|++.|++..|+.+.|..+|+.+. .+++ =--.-|...|.
T Consensus       294 ~al~~~~~~~~~~~~~~l----~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a-~~~~-fYG~LAa~~Lg  361 (450)
T d1qsaa1         294 MALGTGDRRGLNTWLARL----PMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM-QQRG-FYPMVAAQRIG  361 (450)
T ss_dssp             HHHHHTCHHHHHHHHHHS----CTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TSCS-HHHHHHHHHTT
T ss_pred             HHHHcCChHHHHHHHHhc----CcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHh-cCCC-hHHHHHHHHcC
Confidence            478899999999888763    33444457899999999999999999999999999 5653 45555555554

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.23  E-value=0.09  Score=42.79  Aligned_cols=61  Identities=16%  Similarity=0.067  Sum_probs=48.7

Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077          177 KAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (287)
Q Consensus       177 aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (287)
                      ..+.++++..|+..++.++...|.+...   ....+..+|...|..++|+..|+.++..+|+..
T Consensus       118 ~~~~~~~~~~a~~~~~~al~~~~~~~~~---~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~  178 (334)
T d1dcea1         118 SRLPEPNWARELELCARFLEADERNFHC---WDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY  178 (334)
T ss_dssp             HTCSSCCHHHHHHHHHHHHHHCTTCHHH---HHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCH
T ss_pred             HHhccccHHHHHHHHHHHHhhCchhhhh---hhhHHHHHHHhccccHHHHHHHHHHHHcCCCCH
Confidence            3455667999999999999987766552   345667899999999999999999998888643

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.47  E-value=0.24  Score=34.56  Aligned_cols=36  Identities=17%  Similarity=0.218  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF  203 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~  203 (287)
                      +...+..|...+..|+|.+||.+++++++..|.+..
T Consensus        46 ~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~   81 (95)
T d1tjca_          46 VSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR   81 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHH
Confidence            456778899999999999999999999998776643

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.41  E-value=0.63  Score=37.64  Aligned_cols=56  Identities=9%  Similarity=0.008  Sum_probs=24.7

Q ss_pred             HhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023077          179 YGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (287)
Q Consensus       179 LerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (287)
                      ..+|++..|...|+.++...+.+..   .+.+.++..+...|..+.|+.+++...+.+|
T Consensus       110 ~~~~~~~~a~~i~~~~l~~~~~~~~---~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~  165 (308)
T d2onda1         110 ESRMKYEKVHSIYNRLLAIEDIDPT---LVYIQYMKFARRAEGIKSGRMIFKKAREDAR  165 (308)
T ss_dssp             HHTTCHHHHHHHHHHHHTSSSSCTH---HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT
T ss_pred             HhcccHHHHHHHHHHHHHHhcCChH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence            3445555555555554443333222   2344444444444444455444444443333

>d2ijqa1 a.246.2.1 (A:14-158) Hypothetical protein rrnAC1037 {Haloarcula marismortui [TaxId: 2238]}

class: All alpha proteins
fold: Hyaluronidase domain-like
superfamily: TTHA0068-like
family: TTHA0068-like
domain: Hypothetical protein rrnAC1037
species: Haloarcula marismortui [TaxId: 2238]

Probab=88.33  E-value=1.2  Score=35.71  Aligned_cols=89  Identities=13%  Similarity=0.082  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC--chHHHHHHHHHH-H--HHcCChHHHHHHHHHHHH---hCC
Q 023077          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF--FGGEIQIWLAMA-Y--EANNRHADCIALYKQLES---NHP  237 (287)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~--lGGEAQmwLAtA-Y--qa~Gq~EkAIALCQ~L~~---~HP  237 (287)
                      ++....|..|+..|..|+|=.|=+.||.+....+.+++  .--|..|++|.| |  ...|+..-|..++.+-..   .+|
T Consensus        15 ~t~~~a~~~Gi~lfN~g~y~eaHE~lEe~W~~~~~~~~er~~~QGLIQ~Aaa~~hh~~~gN~~GA~~l~~~al~~L~~~~   94 (145)
T d2ijqa1          15 ETLRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVP   94 (145)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSC
T ss_pred             chHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence            35667899999999999999999999999987766553  346777888777 6  488999999999876442   344


Q ss_pred             C-------HHHHHHHHHHHHHhcC
Q 023077          238 S-------KNIRRQAADLRYILQA  254 (287)
Q Consensus       238 d-------~qVRqQAKqLLyILEA  254 (287)
                      .       ..++.++.+++.-++.
T Consensus        95 ~~~~Gidv~~l~~~~~~~~~d~~~  118 (145)
T d2ijqa1          95 NDYYGVDLLDVRTTVTNALSDPSA  118 (145)
T ss_dssp             TTGGGBCHHHHHHHHHHHHHCGGG
T ss_pred             CccCCccHHHHHHHHHHHHhchhh
Confidence            3       4688899888875554

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=88.11  E-value=1.2  Score=34.51  Aligned_cols=75  Identities=16%  Similarity=0.084  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCH
Q 023077          168 AQLMFELGQKAYG----KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA----NNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       168 ae~~yeaG~aALe----rGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa----~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      ....|..|...+.    ..+|..|+.+|.+++..-   .   ..+++.|+..|..    ..+.++|+.++++-. ...+.
T Consensus       178 ~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~---~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa-~~g~~  250 (265)
T d1ouva_         178 SPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---N---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGC-KLGAK  250 (265)
T ss_dssp             HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---C---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHH-HHTCH
T ss_pred             cccccchhhhcccCcccccchhhhhhhHhhhhccc---C---HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH-HCcCH
Confidence            5566778877666    679999999999998852   1   4699999999974    227889999999998 34333


Q ss_pred             HHHHHHHHHHHHhc
Q 023077          240 NIRRQAADLRYILQ  253 (287)
Q Consensus       240 qVRqQAKqLLyILE  253 (287)
                      .    |...|.-|+
T Consensus       251 ~----A~~~l~~l~  260 (265)
T d1ouva_         251 G----ACDILKQLK  260 (265)
T ss_dssp             H----HHHHHHTCC
T ss_pred             H----HHHHHHHHH
Confidence            3    666666554

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=87.18  E-value=2.2  Score=29.59  Aligned_cols=65  Identities=18%  Similarity=-0.001  Sum_probs=49.0

Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 023077          178 AYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRY  250 (287)
Q Consensus       178 ALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLy  250 (287)
                      +|..=....+|..|..++...   ++   .++..-+.|.-..|. +.++.+...+. ++|++.||+.|-..|.
T Consensus        45 ~L~~~~~~~~~~~L~~~l~d~---~~---~VR~~a~~aL~~i~~-~~~~~~L~~ll-~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          45 IIGNFQDERAVEPLIKLLEDD---SG---FVRSGAARSLEQIGG-ERVRAAMEKLA-ETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHGGGCSHHHHHHHHHHHHHC---CT---HHHHHHHHHHHHHCS-HHHHHHHHHHT-TSCCTHHHHHHHHHGG
T ss_pred             HHHhcchhhhHHHHHhhhccc---hh---HHHHHHHHHHHHhCc-cchHHHHHHHH-cCCCHHHHHHHHHHHH
Confidence            344445577899999988632   22   488888888888886 56777777888 7999999999988764

>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Alkylsulfatase-like
domain: Alkylsulfatase SdsA1
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.53  E-value=0.42  Score=44.12  Aligned_cols=54  Identities=20%  Similarity=0.267  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHH
Q 023077          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADC  225 (287)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkA  225 (287)
                      +...++.++.+|.+|+|+-|++++.-++...|.+.    +|+-.+|.||...|...+.
T Consensus       430 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~----~ar~l~a~~~~~l~~~~~~  483 (505)
T d2cfua2         430 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNR----AARELQADALEQLGYQAEN  483 (505)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHHHHhCcC
Confidence            77899999999999999999999999998766554    5999999999998876653

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=84.73  E-value=4.5  Score=28.96  Aligned_cols=66  Identities=12%  Similarity=0.033  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCH
Q 023077          168 AQLMFELGQKAYG----KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA----NNRHADCIALYKQLESNHPSK  239 (287)
Q Consensus       168 ae~~yeaG~aALe----rGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa----~Gq~EkAIALCQ~L~~~HPd~  239 (287)
                      ....|..|..-+.    ..++.+|+.+|+.+++.-   .   ..+++.|+..|..    ..+.++|+.+|++-. ...++
T Consensus        55 ~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~---~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa-~~G~~  127 (133)
T d1klxa_          55 GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---D---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC-RLGSE  127 (133)
T ss_dssp             HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---C---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTTCH
T ss_pred             hhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---c---chHHHHHHHHHHcCCccCCCHHHHHHHHHHHH-HCCCH
Confidence            4456666765554    567999999999998742   1   3588999988876    357889999999877 45444


Q ss_pred             H
Q 023077          240 N  240 (287)
Q Consensus       240 q  240 (287)
                      .
T Consensus       128 ~  128 (133)
T d1klxa_         128 D  128 (133)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.56  E-value=4.3  Score=32.45  Aligned_cols=52  Identities=12%  Similarity=0.011  Sum_probs=24.5

Q ss_pred             cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 023077          181 KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNH  236 (287)
Q Consensus       181 rGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~H  236 (287)
                      .|++..|...|+.++...|.+    ..+.+..+.-+...|+.++|.++|++.+..+
T Consensus       182 ~~~~~~a~~i~e~~l~~~p~~----~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~  233 (308)
T d2onda1         182 SKDKSVAFKIFELGLKKYGDI----PEYVLAYIDYLSHLNEDNNTRVLFERVLTSG  233 (308)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred             ccCHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence            345555555555555433322    1244444444455555555555555544333