Citrus Sinensis ID: 023104

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------
Protein Sequence
MSASGSVSTVSRDDHLVLSSEDSSSPVESELELGLGLSLGGGGFIKAQQQASGGGGGGGQYARILTAKDFSSVVSSSSCLSSSSSSLSRGDYVAAGTKRSSDSVAAANGSSQVVGWPPIRAYRMNSMVNQAKSVASEEYNSMMENKRKNSLVEKTTDVCSKNSASAKGRTSPFVKVNMDGIPIGRKIDLNAHGCYESLVQTLEDMFHQPTTRSSVQEPTRPSKLLDGTSDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGLAPRLQESNGRQRNRPI
Secondary Structure (PSIPRED)
ccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEcccccccHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEcccccEEEcccccHHHHHHHccEEEEEcccHHcccccHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEcccccEEEcccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccEEEccccHHHHHHHHHHHccccccccccccccccccccccEEEEccccccccccccccccEEEEEEccccccEEEEcHHHHccHHHHHHHHHHHHccccccccccccccHHHccccccccEEcEEcccccEEEEccccHHHHHHHHHHHEEEcccHHHcccHHHHHHHcccccccc
Coil and Loop (DISEMBL)
msasgsvstvsrddhlvlssedssspvesELELGLglslggggfikaqqqasgggggggqYARILtakdfssvvssssclsssssslsrgdyvaagtkrssdsvaaangssqvvgwppirAYRMNSMVNQAKSVASEEYNSMMEnkrknslvekttdvcsknsasakgrtspfvkvnmdgipigrkidlnahGCYESLVQTLEDmfhqpttrssvqeptrpsklldgtsdyvltyedkegdwmlvgdvpwgmflgSVKRLRIMRtseatglaprlqesngrqrnrpi
Flexible Loop (DISEMBL)
msasgsvstvsrddhlvlssedssspvESELELGLGLSLGGGGFIKAQQQASGGGGGGGQYARILTAKDFSSVVSSSsclsssssslsRGDYVAAGTKrssdsvaaangssqvvgwpPIRAYRMNSMVNQAKSVASEEYNSMMENKRKNSLVEKTTdvcsknsasakgrtspfvkvnMDGIPIGRKIDLNAHGCYESLVQTLEDMFHQpttrssvqeptrpsklldgtsDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRtseatglaprlqesngrqrnrpi
Low Complexity Region (SEG)
MSASGSVSTVSRDDHlvlssedssspveselelglglslggggFIKAQQQASgggggggQYARILTAKDFssvvssssclsssssslsRGDYVAAGTKRSSDSVAAANGSSQVVGWPPIRAYRMNSMVNQAKSVASEEYNSMMENKRKNSLVEKTTDVCSKNSASAKGRTSPFVKVNMDGIPIGRKIDLNAHGCYESLVQTLEDMFHQPTTRSSVQEPTRPSKLLDGTSDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGLAPRLQESNGRQRNRPI
Disordered region (IsUnstruct)
*****************************************************************************************************************VGWPPIRAY**************************************************FVKVNMDGIPIGRKIDLNAHGCYESLVQTLEDMF********************GTSDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMR***********************
Disordered Region (DISOPRED)
**************************VESELELGL*****************************************************************************************************************************************FVKVNMDGIPIGRKIDLNAHGCYESLVQTLEDMFHQPTTR*****************DYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIM************************
Disordered Region (DISEMBL)
*******************************ELGLGLSLGGGGFIKAQ**********GQYARILTAKDF****************************************SQVVGWPPIRAYRMNSMVNQAKSVASEEYNSMM**************************TSPFVKVNMDGIPIGRKIDLNAHGCYESLVQTLEDMFH*************PSKLLDGTSDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGLA***************
Disordered Region (DISPRO)
*****SVS*****DHLVLSSEDSSSPVESELELGLGL*********************************************************************ANGSSQVVGWPPIRAYRMNSMVNQ********************LVEKT************GRTSPFVKVNMDGIPIGRKIDLNAHGCYESLVQTLEDMFHQPTTRSSVQEPTRPSKLLDGTSDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGLAPRLQESN********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSASGSVSTVSRDDHLVLSSEDSSSPVESELELGLGLSLGGGGFIKAQQQASGGGGGGGQYARILTAKDFSSVVSSSSCLSSSSSSLSRGDYVAAGTKRSSDSVAAANGSSQVVGWPPIRAYRMNSMVNQAKSVASEEYNSMMENKRKNSLVEKTTDVCSKNSASAKGRTSPFVKVNMDGIPIGRKIDLNAHGCYESLVQTLEDMFHQPTTRSSVQEPTRPSKLLDGTSDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGLAPRLQESNGRQRNRPI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	287	2.2.26 [Sep-21-2011]
Q38829	246	Auxin-responsive protein	yes	no	0.783	0.914	0.544	1e-61
Q38831	247	Auxin-responsive protein	no	no	0.682	0.793	0.510	2e-54
Q38830	239	Auxin-responsive protein	no	no	0.710	0.853	0.524	2e-53
Q0DWF2	281	Auxin-responsive protein	yes	no	0.787	0.804	0.454	1e-44
A2XB18	281	Auxin-responsive protein	N/A	no	0.787	0.804	0.454	1e-44
Q38828	261	Auxin-responsive protein	no	no	0.801	0.881	0.446	7e-43
Q6H543	300	Auxin-responsive protein	no	no	0.480	0.46	0.422	5e-31
Q9ZSY8	305	Auxin-responsive protein	no	no	0.595	0.560	0.417	6e-31
Q38832	228	Auxin-responsive protein	no	no	0.512	0.644	0.447	1e-30
O24407	236	Auxin-responsive protein	no	no	0.745	0.906	0.379	2e-30

>sp|Q38829|IAA11_ARATH Auxin-responsive protein IAA11 OS=Arabidopsis thaliana GN=IAA11 PE=1 SV=1

 Score =  236 bits (603), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 146/268 (54%), Positives = 172/268 (64%), Gaps = 43/268 (16%)

Query: 10  VSRDDHLVLSSEDSSSPVESELELGLGLSLGGGGFIKAQQQASGGGGGGGQYARILTAKD 69
           +S D++LV+S EDSSSP+ +ELELGL LSLG  G+   +                + A D
Sbjct: 13  LSNDENLVVSCEDSSSPIGNELELGLTLSLGRKGYRDCR----------------VYADD 56

Query: 70  FSSVVSSSSCLSSSSSSLSRGDYVAAGTKRSSDSVAAANGSSQVVGWPPIRAYRMNSMVN 129
            SS  SSSS   +S         V AG KR++DS+AA +G  QVVGWPPIR YRMNSMVN
Sbjct: 57  SSSSSSSSSLSRAS---------VIAGIKRTADSMAATSG--QVVGWPPIRTYRMNSMVN 105

Query: 130 QAKSVASEEYNSMMENKRKNSLVEKTTDVCSKNSASAKGRTSPFVKVNMDGIPIGRKIDL 189
           QAK+ A+E+ N           +E +  V    S S K R S FVKV MDGIPIGRKIDL
Sbjct: 106 QAKASATEDPN-----------LEISQAVNKNRSDSTKMRNSMFVKVTMDGIPIGRKIDL 154

Query: 190 NAHGCYESLVQTLEDMFHQPTTRSSVQEP----TRPSKLL-DGTSDYVLTYEDKEGDWML 244
           NAH CYESL  TLE+MF +P   S   E       P K+L DG+S  VLTYEDKEGDWML
Sbjct: 155 NAHKCYESLSNTLEEMFLKPKLGSRTLETDGHMETPVKILPDGSSGLVLTYEDKEGDWML 214

Query: 245 VGDVPWGMFLGSVKRLRIMRTSEATGLA 272
           VGDVPWGMF+GSV+RLRIM+TSEATG A
Sbjct: 215 VGDVPWGMFIGSVRRLRIMKTSEATGKA 242

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.
Arabidopsis thaliana (taxid: 3702)

>sp|Q38831|IAA13_ARATH Auxin-responsive protein IAA13 OS=Arabidopsis thaliana GN=IAA13 PE=1 SV=2

 Score =  212 bits (540), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 119/233 (51%), Positives = 148/233 (63%), Gaps = 37/233 (15%)

Query: 63  RILTAKDFSSVVSSSSCLSSSSSSLSRGDYVAAGTKRSSDSVAAA-----NGSSQVVGWP 117
           R+LTAKDF SV                      G+KR++DS + A       SSQVVGWP
Sbjct: 44  RLLTAKDFPSV----------------------GSKRAADSASHAGSSPPRSSSQVVGWP 81

Query: 118 PIRAYRMNSMV-NQAKSVASEEYNSMMENKRKNSLVEKTTDVCSKNSASAKGRTSPFVKV 176
           PI ++RMNS+V NQA   A EE     E  +K    ++  DV  K +   +     F+KV
Sbjct: 82  PIGSHRMNSLVNNQATKSAREEE----EAGKKKVKDDEPKDVTKKVNGKVQ---VGFIKV 134

Query: 177 NMDGIPIGRKIDLNAHGCYESLVQTLEDMFHQ--PTTRSSVQEPTRPSKLLDGTSDYVLT 234
           NMDG+ IGRK+DLNAH  YE+L QTLEDMF +  P T     + T+P +LLDG+S++VLT
Sbjct: 135 NMDGVAIGRKVDLNAHSSYENLAQTLEDMFFRTNPGTVGLTSQFTKPLRLLDGSSEFVLT 194

Query: 235 YEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGLAPRLQESNGRQRNRPI 287
           YEDKEGDWMLVGDVPW MF+ SVKRLR+M+TSEA GLA R QE N RQR +P+
Sbjct: 195 YEDKEGDWMLVGDVPWRMFINSVKRLRVMKTSEANGLAARNQEPNERQRKQPV 247

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38830|IAA12_ARATH Auxin-responsive protein IAA12 OS=Arabidopsis thaliana GN=IAA12 PE=1 SV=1

 Score =  209 bits (532), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 120/229 (52%), Positives = 144/229 (62%), Gaps = 25/229 (10%)

Query: 60  QYARILTAKDFSSVVSSSSCLSSSSSSLSRGDYVAAGTKRSSDSVAAANGSSQVVGWPPI 119
           +  RILTAKDF SV S  S  SSS                     A+   SSQVVGWPPI
Sbjct: 35  ERGRILTAKDFPSVGSKRSAESSSHQG------------------ASPPRSSQVVGWPPI 76

Query: 120 RAYRMNSMVN-QAKSVASEEYNSMMENKRKNSLVEKTTDVCSKNSASAKGRTSPFVKVNM 178
             +RMNS+VN QA   A  E     +   KN   ++  DV  K +   +G    FVKVNM
Sbjct: 77  GLHRMNSLVNNQAMKAARAEEGDGEKKVVKN---DELKDVSMKVNPKVQGLG--FVKVNM 131

Query: 179 DGIPIGRKIDLNAHGCYESLVQTLEDMFHQPTTRSSVQEPTRPSKLLDGTSDYVLTYEDK 238
           DG+ IGRK+D+ AH  YE+L QTLE+MF    T ++ +E  +P +LLDG+SD+VLTYEDK
Sbjct: 132 DGVGIGRKVDMRAHSSYENLAQTLEEMFFG-MTGTTCREKVKPLRLLDGSSDFVLTYEDK 190

Query: 239 EGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGLAPRLQESNGRQRNRPI 287
           EGDWMLVGDVPW MF+ SVKRLRIM TSEA+GLAPR QE   RQRN P+
Sbjct: 191 EGDWMLVGDVPWRMFINSVKRLRIMGTSEASGLAPRRQEQKDRQRNNPV 239

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0DWF2|IAA10_ORYSJ Auxin-responsive protein IAA10 OS=Oryza sativa subsp. japonica GN=IAA10 PE=2 SV=2

 Score =  180 bits (457), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 116/255 (45%), Positives = 144/255 (56%), Gaps = 29/255 (11%)

Query: 32  ELGLGLSLGGGGFIKAQQQASGGGGGGGQYA--RILTAKDFSSVVSSS----SCLSSSSS 85
           EL LGLSLG     K QQQ         Q+A  RILTA+D     + S       SS ++
Sbjct: 33  ELELGLSLGS----KKQQQQ--------QHAPCRILTARDLQPAAALSPDSSVSSSSPAA 80

Query: 86  SLSRGDYVAAGTKRSSDSVAAANGSSQ----VVGWPPIRAYRMNSMVNQAKSVASEEYNS 141
           + + G   A G   ++     A+G       VVGWPPIR +RMNS+ NQAK   SE    
Sbjct: 81  AAAAGGKRAEGPTATTSPGTVASGHPHSSFGVVGWPPIRQFRMNSLFNQAKENTSE--TD 138

Query: 142 MMENKRKNSLVEKTTDVCSKNSASAKGRTSPFVKVNMDGIPIGRKIDLNAHGCYESLVQT 201
             +     S V+K      K     KGR + +VKVNMDG  IGRK+DLNAH  Y++L   
Sbjct: 139 TKKTATNESDVQK-----DKEEGEKKGRVAGWVKVNMDGEVIGRKVDLNAHRSYKTLALA 193

Query: 202 LEDMFHQPTTRSSVQEPTRPSKLLDGTSDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLR 261
           LE MF +P+        T   KLLD +++Y LTYED++GDWMLVGDVPW MF+ SVKRLR
Sbjct: 194 LELMFTKPSIGLCASHNTNSLKLLDNSAEYQLTYEDRDGDWMLVGDVPWEMFVSSVKRLR 253

Query: 262 IMRTSEATGLAPRLQ 276
           IMRTS+A GL  R Q
Sbjct: 254 IMRTSDANGLGQRYQ 268

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2XB18|IAA10_ORYSI Auxin-responsive protein IAA10 OS=Oryza sativa subsp. indica GN=IAA10 PE=2 SV=2

 Score =  180 bits (457), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 116/255 (45%), Positives = 144/255 (56%), Gaps = 29/255 (11%)

Query: 32  ELGLGLSLGGGGFIKAQQQASGGGGGGGQYA--RILTAKDFSSVVSSS----SCLSSSSS 85
           EL LGLSLG     K QQQ         Q+A  RILTA+D     + S       SS ++
Sbjct: 33  ELELGLSLGS----KKQQQQ--------QHAPCRILTARDLQPAAALSPDSSVSSSSPAA 80

Query: 86  SLSRGDYVAAGTKRSSDSVAAANGSSQ----VVGWPPIRAYRMNSMVNQAKSVASEEYNS 141
           + + G   A G   ++     A+G       VVGWPPIR +RMNS+ NQAK   SE    
Sbjct: 81  AAAAGGKRAEGPTATTSPGTVASGHPHSSFGVVGWPPIRQFRMNSLFNQAKENTSE--TD 138

Query: 142 MMENKRKNSLVEKTTDVCSKNSASAKGRTSPFVKVNMDGIPIGRKIDLNAHGCYESLVQT 201
             +     S V+K      K     KGR + +VKVNMDG  IGRK+DLNAH  Y++L   
Sbjct: 139 TKKTATNESDVQK-----DKEEGEKKGRVAGWVKVNMDGEVIGRKVDLNAHRSYKTLALA 193

Query: 202 LEDMFHQPTTRSSVQEPTRPSKLLDGTSDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLR 261
           LE MF +P+        T   KLLD +++Y LTYED++GDWMLVGDVPW MF+ SVKRLR
Sbjct: 194 LELMFTKPSIGLCASHNTNSLKLLDNSAEYQLTYEDRDGDWMLVGDVPWEMFVSSVKRLR 253

Query: 262 IMRTSEATGLAPRLQ 276
           IMRTS+A GL  R Q
Sbjct: 254 IMRTSDANGLGQRYQ 268

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q38828|IAA10_ARATH Auxin-responsive protein IAA10 OS=Arabidopsis thaliana GN=IAA10 PE=2 SV=1

 Score =  174 bits (441), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 130/291 (44%), Positives = 166/291 (57%), Gaps = 61/291 (20%)

Query: 2   SASGSVST---VSRDDHLVLSSEDSSSPVES----ELELGLGLSLGGGGFIKAQQQASGG 54
           S+SGSV        D++   SSEDSS P ES    EL+L LGLS+               
Sbjct: 9   SSSGSVMIGLPAEEDENAAHSSEDSSCPDESVSETELDLALGLSI--------------- 53

Query: 55  GGGGGQYARILTAKDFSSVVSSSSCLSSSSSSLSRGDYVAAGTKRSSDSVAAANG--SSQ 112
              G +  R   +   SS+   S                  GTKRS+DS  AA    + Q
Sbjct: 54  ---GRRKVRSSLSSSSSSLTRES------------------GTKRSADSSPAAASNATRQ 92

Query: 113 V-VGWPPIRAYRMNSMVNQAKSVASEE-YNSMMENKRKNSLV--EKTTDVCSKNSASAKG 168
           V VGWPP+R YR+NS+VNQAKS+A+E   +S ++ +   S+V   K  D C   S+    
Sbjct: 93  VAVGWPPLRTYRINSLVNQAKSLATEGGLSSGIQKETTKSVVVAAKNDDACFIKSS---- 148

Query: 169 RTSPFVKVNMDGIPIGRKIDLNAHGCYESLVQTLEDMFHQ---PTTRSSVQ-----EPTR 220
           RTS  VKV MDG+ IGRK+DLNA   Y +L +TL+ MF Q   P TRS+ Q     + T 
Sbjct: 149 RTSMLVKVTMDGVIIGRKVDLNALDSYAALEKTLDLMFFQIPSPVTRSNTQGYKTIKETC 208

Query: 221 PSKLLDGTSDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGL 271
            SKLLDG+S+Y++TY+DK+GDWMLVGDVPW MFLGSV RLRIM+TS   G+
Sbjct: 209 TSKLLDGSSEYIITYQDKDGDWMLVGDVPWQMFLGSVTRLRIMKTSIGAGV 259

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6H543|IAA7_ORYSJ Auxin-responsive protein IAA7 OS=Oryza sativa subsp. japonica GN=IAA7 PE=2 SV=1

 Score =  135 bits (339), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 71/168 (42%), Positives = 97/168 (57%), Gaps = 30/168 (17%)

Query: 110 SSQVVGWPPIRAYRMNSMVNQAKSVASEEYNSMMENKRKNSLVEKTTDVCSKNSASAKGR 169
           S+ VVGWPP+R +R N   +   S+        ++N +K +  E+              +
Sbjct: 136 STPVVGWPPVRTFRRNLATSSKASLE-------LQNGKKAAKAEEI-------------K 175

Query: 170 TSPFVKVNMDGIPIGRKIDLNAHGCYESLVQTLEDMFH-------QPTT---RSSVQEPT 219
            +PF+K+NMDG+PIGRKIDLNA   YE L   ++ +F         P T   +   QE  
Sbjct: 176 RAPFIKINMDGVPIGRKIDLNAFDSYEKLSLAVDKLFRGLLAAQRDPLTAGAKDCQQEDV 235

Query: 220 RPSKLLDGTSDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSE 267
             S LLDGT +Y L YED EGD +LVGDVPWGMF+ SVKRLR+++TS+
Sbjct: 236 AISGLLDGTGEYTLVYEDYEGDKVLVGDVPWGMFVSSVKRLRVLKTSD 283

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9ZSY8|IAA27_ARATH Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=1 SV=1

 Score =  134 bits (338), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 84/201 (41%), Positives = 107/201 (53%), Gaps = 30/201 (14%)

Query: 94  AAGTKRSSDSVAAANGSSQVVGWPPIRAYRMNSMVNQAKSVASEEYNSMMENKRKNSLVE 153
           A   K    S  A    +QVVGWPPIR++R NSM +           S  +    NS  E
Sbjct: 125 AVPVKEKKSSATAPASKAQVVGWPPIRSFRKNSMAS-----------SQSQKPGNNSETE 173

Query: 154 KTTDVCSKNSASAKGRTSPFVKVNMDGIPIGRKIDLNAHGCYESLVQTLEDMF------- 206
           +        + S   +   +VKV+M+G P  RKIDL  +  Y  L   LE MF       
Sbjct: 174 EA------EAKSGPEQPCLYVKVSMEGAPYLRKIDLKTYKSYLELSSALEKMFSCFTIGQ 227

Query: 207 ---HQPTTRSSVQEPTRPSKLLDGTSDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIM 263
              H    R  + E +R + LL G S+YV+TYEDK+ DWMLVGDVPW MF+ S K+LRIM
Sbjct: 228 FGSHGGCGRDGLNE-SRLTDLLRG-SEYVVTYEDKDSDWMLVGDVPWEMFICSCKKLRIM 285

Query: 264 RTSEATGLAPRLQESNGRQRN 284
           ++SEA GLAPR+ E   R RN
Sbjct: 286 KSSEAIGLAPRVME-KCRSRN 305

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38832|IAA14_ARATH Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2

 Score =  133 bits (335), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/181 (44%), Positives = 102/181 (56%), Gaps = 34/181 (18%)

Query: 111 SQVVGWPPIRAYRMNSMVNQAKSVASEEYNSMMENKRKNSLVEKTTDVCSKNSASAKGRT 170
           +QVVGWPP+R YR N M NQ KS  +EE                        + S+ G T
Sbjct: 75  AQVVGWPPVRNYRKNVMANQ-KSGEAEE------------------------AMSSGGGT 109

Query: 171 SPFVKVNMDGIPIGRKIDLNAHGCYESLVQTLEDMFHQPTTRS----SVQEPTRPSKLLD 226
             FVKV+MDG P  RK+DL  +  Y+ L   L  MF   T  S     + +    SK++D
Sbjct: 110 VAFVKVSMDGAPYLRKVDLKMYTSYKDLSDALAKMFSSFTMGSYGAQGMIDFMNESKVMD 169

Query: 227 --GTSDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGLAPRLQESNGRQRN 284
              +S+YV +YEDK+GDWMLVGDVPW MF+ S KRLRIM+ SEA GLAPR  E   + +N
Sbjct: 170 LLNSSEYVPSYEDKDGDWMLVGDVPWPMFVESCKRLRIMKGSEAIGLAPRAME---KFKN 226

Query: 285 R 285
           R
Sbjct: 227 R 227

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|O24407|IAA16_ARATH Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=1 SV=1

 Score =  132 bits (333), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/240 (37%), Positives = 125/240 (52%), Gaps = 26/240 (10%)

Query: 53  GGGGGGGQYARILTAKDFSSVVSSSSCLSSSS-SSLSRGDYVAAGTKRSSDSVAAANGSS 111
           GG  GG    +    + FS  V     LSS++  S+S+ D      +   + V      +
Sbjct: 15  GGNHGGEMAGKNNGKRGFSETVDLKLNLSSTAMDSVSKVD-----LENMKEKVVKPPAKA 69

Query: 112 QVVGWPPIRAYRMNSMVNQAKSVASEEYNSMMENKRKNSLVEKTTDVCSKNSASAKGRTS 171
           QVVGWPP+R++R N M  Q  +       +           +KT+      S+++   T 
Sbjct: 70  QVVGWPPVRSFRKNVMSGQKPTTGDATEGN-----------DKTSGSSGATSSASACATV 118

Query: 172 PFVKVNMDGIPIGRKIDLNAHGCYESLVQTLEDMFHQPTTRS----SVQEPTRPSKLLD- 226
            +VKV+MDG P  RKIDL  +  Y+ L   L  MF   T  +     +++    SKL+D 
Sbjct: 119 AYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQGMKDFMNESKLIDL 178

Query: 227 -GTSDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGLAPRLQESNGRQRNR 285
              SDYV TYEDK+GDWMLVGDVPW MF+ S KR+RIM+ SEA GLAPR  E   + +NR
Sbjct: 179 LNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGSEAIGLAPRALE---KCKNR 235

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	287
359480055	296	PREDICTED: auxin-responsive protein IAA1	0.958	0.929	0.653	2e-84
332167933	306	auxin-responsive protein [Gossypium hirs	0.975	0.915	0.614	1e-74
302398583	295	ARF domain class transcription factor [M	0.968	0.942	0.614	5e-73
255571182	300	Auxin-responsive protein IAA13, putative	0.780	0.746	0.65	1e-72
255574879	318	Auxin-responsive protein IAA13, putative	0.951	0.858	0.557	1e-72
359477690	321	PREDICTED: auxin-responsive protein IAA1	0.961	0.859	0.566	6e-72
296083735	283	unnamed protein product [Vitis vinifera]	0.825	0.837	0.571	2e-71
225433277	314	PREDICTED: auxin-responsive protein IAA1	0.958	0.875	0.570	7e-71
399894421	306	ARF domain class transcription factor [P	0.787	0.738	0.598	2e-70
302398577	306	ARF domain class transcription factor [M	0.787	0.738	0.594	7e-70

>gi|359480055|ref|XP_002269922.2| PREDICTED: auxin-responsive protein IAA11-like [Vitis vinifera]

 Score =  318 bits (815), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 192/294 (65%), Positives = 230/294 (78%), Gaps = 19/294 (6%)

Query: 4   SGSVSTVSRDDHLVLSSEDSSSPVESELELGLGLSLGGGGF----IKAQQQASGGGGGGG 59
           SGS+STVS++D+L++S+E SS P E+ELELGLGLSLGGGG     +K Q+Q      G  
Sbjct: 12  SGSMSTVSKEDNLMVSTEVSSYPDEAELELGLGLSLGGGGGGGGGVKPQEQ------GWA 65

Query: 60  QYARILTAKDFSSVVSSSSCLSSSSSSLSRGDYVAAGTKRSSDSVAAAN-GSSQVVGWPP 118
           QY RILTAKDF S VSSSS   SSSSSLSR +    GTKR +DSVAA+N GSSQVVGWPP
Sbjct: 66  QYGRILTAKDFPSTVSSSS---SSSSSLSRANRTTVGTKRRADSVAASNNGSSQVVGWPP 122

Query: 119 IRAYRMNSMVNQAKSVASEEYNSMME-NKRKNSLVEKTTDVCSKNSASAKGR----TSPF 173
           IRAYRMNS+ NQ+KS+ +E+ NSM+E +K  N++VE T +  +  +  AK +    TS F
Sbjct: 123 IRAYRMNSLANQSKSLVTEDLNSMVEKSKSTNTMVENTYNGSNNTNGYAKKKGPLNTSFF 182

Query: 174 VKVNMDGIPIGRKIDLNAHGCYESLVQTLEDMFHQPTTRSSVQEPTRPSKLLDGTSDYVL 233
           VKVNMDGIPIGRK+DL+AH CYE+L +TLE+MF  PTT  +  E TRPSKLLDG+SD+VL
Sbjct: 183 VKVNMDGIPIGRKVDLSAHSCYETLAKTLEEMFQGPTTTVNAIESTRPSKLLDGSSDFVL 242

Query: 234 TYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGLAPRLQESNGRQRNRPI 287
           TYEDKEGDWMLVGDVPWGMFLGS +RLRIMRTS+A GLAPR+QE NGRQR+  I
Sbjct: 243 TYEDKEGDWMLVGDVPWGMFLGSARRLRIMRTSDANGLAPRIQERNGRQRSMRI 296

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|332167933|gb|AEE25651.1| auxin-responsive protein [Gossypium hirsutum]

 Score =  285 bits (730), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 185/301 (61%), Positives = 221/301 (73%), Gaps = 21/301 (6%)

Query: 2   SASGSVSTVSRDDHLVLSSEDSSSPVESELELGLGLSLGGGGFIKAQQQASGGGGGGGQY 61
           S SGSVSTVSR++++VLSSEDSS P +SELELGLGLSLGGGG        S       Q+
Sbjct: 10  SESGSVSTVSREENMVLSSEDSSCPDQSELELGLGLSLGGGGGGFKMHHVSKSS----QF 65

Query: 62  ARILTAKDFSSVV----SSSSCLSSSSSSLSRGDYVAAGTKRSSDSVAAANGSSQVVGWP 117
           ARILTAKD  S+V    S SS  SSS SSLSR D V A TKR++DS+AAANG SQ+VGWP
Sbjct: 66  ARILTAKDLPSLVFSAASPSSSSSSSPSSLSRAD-VTAKTKRTADSMAAANGFSQLVGWP 124

Query: 118 PIRAYRMNSMVNQAKSVASEEYNSMMEN-KRKNSLVEKTTDVCSKNSASAKGRTSPFVKV 176
           P++ +R+NSM NQAK++ +E +NS MEN K + S+VEK+T    +N+ +AK R S FVKV
Sbjct: 125 PVQTHRINSMGNQAKALPAEGFNSKMENPKNETSMVEKSTVGSYQNNGNAKLRKSLFVKV 184

Query: 177 NMDGIPIGRKIDLNAHGCYESLVQTLEDMFHQPTTRSS-----------VQEPTRPSKLL 225
           NMDGIPIGRK+DLNAHG YE L +TLEDMF +     S             + TRPSKLL
Sbjct: 185 NMDGIPIGRKVDLNAHGSYEKLAKTLEDMFLETAPSVSQVGSRALEHGMTNKLTRPSKLL 244

Query: 226 DGTSDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGLAPRLQESNGRQRNR 285
           D +SD+ LTY+DKEGDWMLVGDVPW +F+ SVKRLRIMRTSEATGLAP LQ  N RQR++
Sbjct: 245 DVSSDFALTYKDKEGDWMLVGDVPWELFVISVKRLRIMRTSEATGLAPMLQGRNQRQRSK 304

Query: 286 P 286
           P
Sbjct: 305 P 305

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398583|gb|ADL36586.1| ARF domain class transcription factor [Malus x domestica]

 Score =  280 bits (716), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 182/296 (61%), Positives = 213/296 (71%), Gaps = 18/296 (6%)

Query: 2   SASGSV--STVSRDDHLVLSSEDSSSPVESELELGLGLSLGGGGFIKAQQQASGGGGGGG 59
           SASGS+  ST+SR+++  +SSEDSS+P ES LEL LGLSLGGGG    Q Q         
Sbjct: 6   SASGSLTKSTLSREENFAMSSEDSSTPEESGLELCLGLSLGGGGGKDQQGQRG------- 58

Query: 60  QYARILTAKDFSSV--VSSSSCLSSSSSSLSRGDYVAAGTKRSSDSVAAANGSSQVVGWP 117
            +ARILTAKDF SV   SS +  SSSS+S      VAAGTKRS+DSVAAANG+SQVVGWP
Sbjct: 59  HFARILTAKDFPSVGFSSSLASESSSSTSSLSSGNVAAGTKRSADSVAAANGASQVVGWP 118

Query: 118 PIRAYRMNSMVNQAKSVASEEYNSMMENKRKNSLVEKTTDVCSKNSASAK----GRTSPF 173
           PIRAYRMNS+V QAKS ++E  NS+ E     +  EK  +   K++ +AK     R S F
Sbjct: 119 PIRAYRMNSLVLQAKSSSTEGLNSVNEKSEYKTGAEKVNNGGHKSNGNAKEIGQQRGSLF 178

Query: 174 VKVNMDGIPIGRKIDLNAHGCYESLVQTLEDMFHQPTTRSSVQE---PTRPSKLLDGTSD 230
           VKVNMDGIPIGRK++L+AH  YE+L Q LEDMF   T  S  QE    TRPSKLLDG+ +
Sbjct: 179 VKVNMDGIPIGRKVNLSAHSSYEALAQKLEDMFGPSTHGSGGQEMEGATRPSKLLDGSFE 238

Query: 231 YVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGLAPRLQESNGRQRNRP 286
           + LTYEDK+GDWMLVGDVPW MFLG+VKRLRIMRTSEA GLAP LQE N RQR +P
Sbjct: 239 FALTYEDKDGDWMLVGDVPWEMFLGTVKRLRIMRTSEANGLAPLLQEKNVRQRCKP 294

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571182|ref|XP_002526541.1| Auxin-responsive protein IAA13, putative [Ricinus communis] gi|223534102|gb|EEF35819.1| Auxin-responsive protein IAA13, putative [Ricinus communis]

 Score =  279 bits (713), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 156/240 (65%), Positives = 182/240 (75%), Gaps = 16/240 (6%)

Query: 48  QQQASGGGGGGGQYARILTAKDF-SSVVSSSSCLSSSSSSLSRGDYVAAGTKRSSDSVAA 106
            Q    G      YARILTAKD   S VSS++  SSSS++LSRG+   AGTKRS+DSV+A
Sbjct: 57  NQHIVKGTHNFNHYARILTAKDLPCSHVSSTTSSSSSSTTLSRGNGSTAGTKRSADSVSA 116

Query: 107 A---NGSSQVVGWPPIRAYRMNSMVNQAKSVASEEYNSMME-NKRKNSLVEKTTDVCSKN 162
           A     SSQVVGWPPIRAYRMNSMVNQAKS+A++E+NS++  NK  N+LVEKT +  + N
Sbjct: 117 APPNAASSQVVGWPPIRAYRMNSMVNQAKSMAADEFNSVVGGNKGNNTLVEKTKNGSNMN 176

Query: 163 SASAKGRTSPFVKVNMDGIPIGRKIDLNAHGCYESLVQTLEDMFHQPTTRSSVQEP---- 218
           ++ +K RTS FVKVNMDGIPIGRK+DL+AHGCYE+L QTLEDMF QPT   +   P    
Sbjct: 177 NSISKARTSLFVKVNMDGIPIGRKVDLSAHGCYEALAQTLEDMFLQPTPTINALRPSATE 236

Query: 219 -------TRPSKLLDGTSDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGL 271
                  TR   LLDG+S++VLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGL
Sbjct: 237 HNIMADGTRRPTLLDGSSEFVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGL 296

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574879|ref|XP_002528346.1| Auxin-responsive protein IAA13, putative [Ricinus communis] gi|223532214|gb|EEF34018.1| Auxin-responsive protein IAA13, putative [Ricinus communis]

 Score =  279 bits (713), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 159/285 (55%), Positives = 196/285 (68%), Gaps = 12/285 (4%)

Query: 15  HLVLSSEDSSSPVESELELGLGLSLGGGGFIKAQQQASGGGGGGGQYARILTAKDFSSVV 74
            +V+ +E SS PVE+ELELGLGLS+GG G         G     G+  RILTAKDF SVV
Sbjct: 34  EVVVDAEASSYPVEAELELGLGLSIGGSGGGGGGGGGKGKANAWGECGRILTAKDFPSVV 93

Query: 75  SSSSCLSSSSSSLSRGDYVA---AGTKRSSDSVAAANGS----SQVVGWPPIRAYRMNSM 127
           S     +++S+  +    VA   +GTKR++DSV+   GS    SQ+VGWPP+R YR+NS+
Sbjct: 94  SQPIRCNNNSNKGTATACVAGAVSGTKRAADSVSHEGGSPTAASQIVGWPPVRTYRINSL 153

Query: 128 VNQAKSVASEEYNSMMENKRKNSLVEKTTDVCSKNSASAKGRTSPFVKVNMDGIPIGRKI 187
           VNQAK+  SEE  S++E  +     +K  +    N+ + +     FVKVNMDGIPIGRK+
Sbjct: 154 VNQAKASRSEEDKSVVEQDKSKDASKKICNGSKTNATNNEKGHLGFVKVNMDGIPIGRKV 213

Query: 188 DLNAHGCYESLVQTLEDMFHQPT-----TRSSVQEPTRPSKLLDGTSDYVLTYEDKEGDW 242
           DLNAH  YE+L QTLEDMF + T     T    Q+ T+PSKLLDG+S++VLTYEDKEGDW
Sbjct: 214 DLNAHASYETLAQTLEDMFFRSTPSINSTGGEKQQSTKPSKLLDGSSEFVLTYEDKEGDW 273

Query: 243 MLVGDVPWGMFLGSVKRLRIMRTSEATGLAPRLQESNGRQRNRPI 287
           MLVGDVPWGMFL SVKRLRIMRTSEA GLAPR QE  GRQR +PI
Sbjct: 274 MLVGDVPWGMFLTSVKRLRIMRTSEANGLAPRFQERTGRQRRKPI 318

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477690|ref|XP_002285483.2| PREDICTED: auxin-responsive protein IAA13-like isoform 2 [Vitis vinifera]

 Score =  276 bits (707), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 171/302 (56%), Positives = 220/302 (72%), Gaps = 26/302 (8%)

Query: 6   SVSTVSRDDHL-VLSSEDSSSPVESELELGLGLSLGGGGF-----IKAQQQASGGGGGGG 59
           SV+TVS+ + +  +S+E SS P E+ELELGLGLSLG GG      +K +Q +S  G    
Sbjct: 26  SVTTVSKVEVVEQMSTEASSYPGEAELELGLGLSLGTGGGGGGGLVKPKQPSSAWG---- 81

Query: 60  QYARILTAKDFSSVVSSSSCLSSSSSSLSRGDYVAAGTKRSSDS-----VAAANGSSQVV 114
           +Y RILTAKDF SV+S++S  +   S+ S G    +GTKR++DS     V +A  +SQVV
Sbjct: 82  EYGRILTAKDFPSVLSNASSTAPRFSNSSAGP--VSGTKRAADSAVSQEVGSATAASQVV 139

Query: 115 GWPPIRAYRMNSMVNQAKSVASEEYNSMMEN-KRKNSLVEKTTDVCSKNSASAKGRTSP- 172
           GWPPIRAYRMNS+VNQAK++A+E+  +  EN K K++L +K     +KN+++ K +    
Sbjct: 140 GWPPIRAYRMNSLVNQAKALAAEDDKADSENDKFKDTLKKKPYTGSNKNNSTVKEKGHLG 199

Query: 173 FVKVNMDGIPIGRKIDLNAHGCYESLVQTLEDMFHQ-----PTTRSSVQ--EPTRPSKLL 225
           FVKVNMDG+PIGRK+DL+AH CY +L QTLEDMF +     P  RS V+  + T PSKLL
Sbjct: 200 FVKVNMDGLPIGRKVDLDAHACYGTLAQTLEDMFFRHNTTMPPIRSDVEKGQSTNPSKLL 259

Query: 226 DGTSDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGLAPRLQESNGRQRNR 285
           DG+S++VLTYEDKEGDWMLVGDVPWGMFL +VKRLRIMRTSEA GLAPR QE + RQR++
Sbjct: 260 DGSSEFVLTYEDKEGDWMLVGDVPWGMFLSTVKRLRIMRTSEANGLAPRFQERSERQRSK 319

Query: 286 PI 287
           PI
Sbjct: 320 PI 321

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083735|emb|CBI23724.3| unnamed protein product [Vitis vinifera]

 Score =  275 bits (703), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 147/257 (57%), Positives = 189/257 (73%), Gaps = 20/257 (7%)

Query: 45  IKAQQQASGGGGGGGQYARILTAKDFSSVVSSSSCLSSSSSSLSRGDYVAAGTKRSSDS- 103
           +K +Q +S  G    +Y RILTAKDF SV+S++S  +   S+ S G    +GTKR++DS 
Sbjct: 33  VKPKQPSSAWG----EYGRILTAKDFPSVLSNASSTAPRFSNSSAGP--VSGTKRAADSA 86

Query: 104 ----VAAANGSSQVVGWPPIRAYRMNSMVNQAKSVASEEYNSMMEN-KRKNSLVEKTTDV 158
               V +A  +SQVVGWPPIRAYRMNS+VNQAK++A+E+  +  EN K K++L +K    
Sbjct: 87  VSQEVGSATAASQVVGWPPIRAYRMNSLVNQAKALAAEDDKADSENDKFKDTLKKKPYTG 146

Query: 159 CSKNSASAKGRTSP-FVKVNMDGIPIGRKIDLNAHGCYESLVQTLEDMFHQ-----PTTR 212
            +KN+++ K +    FVKVNMDG+PIGRK+DL+AH CY +L QTLEDMF +     P  R
Sbjct: 147 SNKNNSTVKEKGHLGFVKVNMDGLPIGRKVDLDAHACYGTLAQTLEDMFFRHNTTMPPIR 206

Query: 213 SSVQ--EPTRPSKLLDGTSDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATG 270
           S V+  + T PSKLLDG+S++VLTYEDKEGDWMLVGDVPWGMFL +VKRLRIMRTSEA G
Sbjct: 207 SDVEKGQSTNPSKLLDGSSEFVLTYEDKEGDWMLVGDVPWGMFLSTVKRLRIMRTSEANG 266

Query: 271 LAPRLQESNGRQRNRPI 287
           LAPR QE + RQR++PI
Sbjct: 267 LAPRFQERSERQRSKPI 283

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433277|ref|XP_002285481.1| PREDICTED: auxin-responsive protein IAA13-like isoform 1 [Vitis vinifera]

 Score =  273 bits (698), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 169/296 (57%), Positives = 215/296 (72%), Gaps = 21/296 (7%)

Query: 6   SVSTVSRDDHL-VLSSEDSSSPVESELELGLGLSLGGGGF-----IKAQQQASGGGGGGG 59
           SV+TVS+ + +  +S+E SS P E+ELELGLGLSLG GG      +K +Q +S  G    
Sbjct: 26  SVTTVSKVEVVEQMSTEASSYPGEAELELGLGLSLGTGGGGGGGLVKPKQPSSAWG---- 81

Query: 60  QYARILTAKDFSSVVSSSSCLSSSSSSLSRGDYVAAGTKRSSDSV------AAANGSSQV 113
           +Y RILTAKDF SV+S++S  +   S+ S G    +GTKR++DS       +A   SSQV
Sbjct: 82  EYGRILTAKDFPSVLSNASSTAPRFSNSSAGP--VSGTKRAADSAVSQEVGSATAASSQV 139

Query: 114 VGWPPIRAYRMNSMVNQAKSVASEEYNSMMEN-KRKNSLVEKTTDVCSKNSASAKGRTSP 172
           VGWPPIRAYRMNS+VNQAK++A+E+  +  EN K K++L +K     +KN+++ K +   
Sbjct: 140 VGWPPIRAYRMNSLVNQAKALAAEDDKADSENDKFKDTLKKKPYTGSNKNNSTVKEKGHL 199

Query: 173 -FVKVNMDGIPIGRKIDLNAHGCYESLVQTLEDMFHQPTTRSSVQEPTRPSKLLDGTSDY 231
            FVKVNMDG+PIGRK+DL+AH CY +L QTLEDMF +  T    Q  T PSKLLDG+S++
Sbjct: 200 GFVKVNMDGLPIGRKVDLDAHACYGTLAQTLEDMFFRHNTTMPRQS-TNPSKLLDGSSEF 258

Query: 232 VLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGLAPRLQESNGRQRNRPI 287
           VLTYEDKEGDWMLVGDVPWGMFL +VKRLRIMRTSEA GLAPR QE + RQR++PI
Sbjct: 259 VLTYEDKEGDWMLVGDVPWGMFLSTVKRLRIMRTSEANGLAPRFQERSERQRSKPI 314

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|399894421|gb|AFP54302.1| ARF domain class transcription factor [Pyrus x bretschneideri]

 Score =  271 bits (694), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 143/239 (59%), Positives = 172/239 (71%), Gaps = 13/239 (5%)

Query: 59  GQYARILTAKDFSSVVSSSSCLSSSSSSLSRGDYVAA----GTKRSSDSVAAANGS---- 110
           G+  RILTAKDF S++ S    S++S    R +  AA    GTKR++DSV    GS    
Sbjct: 71  GERGRILTAKDFPSMMVSHGGSSAASRFSHRPNASAAVAVSGTKRAADSVPQEGGSPTAV 130

Query: 111 SQVVGWPPIRAYRMNSMVNQAKSVASEEYNSMMENKRKNSLVEKTTDVCSKNSASAKGRT 170
           SQVVGWPPI A RMNS+VNQAK+  +E+  ++ E  +  S  +K  +V SK +   KG  
Sbjct: 131 SQVVGWPPISAARMNSLVNQAKTARAEDDTAVGEKSKDTS--KKKINVGSKTTVKEKGHL 188

Query: 171 SPFVKVNMDGIPIGRKIDLNAHGCYESLVQTLEDMFHQPTTR--SSVQEPTRPSKLLDGT 228
             FVKVNMDGIPIGRK+DLNAH CYE+L QTLE+MF  PTT      ++  +PSKLLDG+
Sbjct: 189 G-FVKVNMDGIPIGRKVDLNAHSCYETLAQTLEEMFISPTTAIGGDTEQAKKPSKLLDGS 247

Query: 229 SDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGLAPRLQESNGRQRNRPI 287
           S++VLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEA GLAPR QE + RQRN+PI
Sbjct: 248 SEFVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEANGLAPRFQERSERQRNKPI 306

Source: Pyrus x bretschneideri

Species: Pyrus x bretschneideri

Genus: Pyrus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398577|gb|ADL36583.1| ARF domain class transcription factor [Malus x domestica]

 Score =  270 bits (689), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 142/239 (59%), Positives = 170/239 (71%), Gaps = 13/239 (5%)

Query: 59  GQYARILTAKDFSSVVSSSSCLSSSSSSLSRGDYVAA----GTKRSSDSVAAANGS---- 110
           G+  RILTAKD  S+V S    S++S    R +  AA    GTKR++DS     GS    
Sbjct: 71  GERGRILTAKDLPSMVVSRGASSAASRFSHRPNASAAVAVSGTKRAADSAPQEGGSPTAV 130

Query: 111 SQVVGWPPIRAYRMNSMVNQAKSVASEEYNSMMENKRKNSLVEKTTDVCSKNSASAKGRT 170
           SQVVGWPPI A RMNS+VNQAK+  +E+  ++ E  +  S  +K  +V SK +   KG  
Sbjct: 131 SQVVGWPPISAARMNSLVNQAKTARAEDDTAVGEKSKDTS--KKKINVGSKTTVKEKGHL 188

Query: 171 SPFVKVNMDGIPIGRKIDLNAHGCYESLVQTLEDMFHQPTTR--SSVQEPTRPSKLLDGT 228
             FVKVNMDGIPIGRK+DLNAH CYE+L QTLE+MF  PTT      ++  +PSKLLDG+
Sbjct: 189 G-FVKVNMDGIPIGRKVDLNAHSCYETLAQTLEEMFISPTTTIGGDTEQAKKPSKLLDGS 247

Query: 229 SDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGLAPRLQESNGRQRNRPI 287
           S++VLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEA GLAPR QE + RQRN+PI
Sbjct: 248 SEFVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEANGLAPRFQERSERQRNKPI 306

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	287
TAIR|locus:2051154	247	IAA13 "auxin-induced protein 1	0.665	0.773	0.529	7.7e-52
TAIR|locus:2197838	239	IAA12 "indole-3-acetic acid in	0.665	0.799	0.549	1.3e-51
TAIR|locus:2139890	302	IAA11 "indole-3-acetic acid in	0.574	0.546	0.622	1.6e-51
TAIR|locus:2020255	261	IAA10 "indoleacetic acid-induc	0.602	0.662	0.544	1.7e-43
UNIPROTKB|Q75GB1	257	IAA17 "Auxin-responsive protei	0.452	0.505	0.482	3.4e-32
UNIPROTKB|Q5NB25	263	IAA3 "Auxin-responsive protein	0.445	0.486	0.478	7.7e-31
TAIR|locus:2195820	267	IAA18 "indole-3-acetic acid in	0.634	0.681	0.388	1.8e-30
UNIPROTKB|Q75GK0	233	IAA11 "Auxin-responsive protei	0.404	0.497	0.504	2.3e-29
TAIR|locus:2169955	338	IAA9 "indole-3-acetic acid ind	0.442	0.375	0.462	2.9e-29
TAIR|locus:2084933	236	IAA16 "indoleacetic acid-induc	0.574	0.699	0.417	7.1e-29

TAIR|locus:2051154 IAA13 "auxin-induced protein 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 518 (187.4 bits), Expect = 7.7e-52, Sum P(2) = 7.7e-52
 Identities = 108/204 (52%), Positives = 142/204 (69%)

Query:    91 DYVAAGTKRSSDSVAAANGS-----SQVVGWPPIRAYRMNSMVNQAKSVASEEYNSMMEN 145
             D+ + G+KR++DS + A  S     SQVVGWPPI ++RMNS+VN   + ++ E     + 
Sbjct:    50 DFPSVGSKRAADSASHAGSSPPRSSSQVVGWPPIGSHRMNSLVNNQATKSAREEEEAGKK 109

Query:   146 KRKNSLVEKTTDVCSKNSASAKGRTSPFVKVNMDGIPIGRKIDLNAHGCYESLVQTLEDM 205
             K K+   ++  DV  K   + K +   F+KVNMDG+ IGRK+DLNAH  YE+L QTLEDM
Sbjct:   110 KVKD---DEPKDVTKK--VNGKVQVG-FIKVNMDGVAIGRKVDLNAHSSYENLAQTLEDM 163

Query:   206 FHQ--PTTRSSVQEPTRPSKLLDGTSDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIM 263
             F +  P T     + T+P +LLDG+S++VLTYEDKEGDWMLVGDVPW MF+ SVKRLR+M
Sbjct:   164 FFRTNPGTVGLTSQFTKPLRLLDGSSEFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRVM 223

Query:   264 RTSEATGLAPRLQESNGRQRNRPI 287
             +TSEA GLA R QE N RQR +P+
Sbjct:   224 KTSEANGLAARNQEPNERQRKQPV 247

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

TAIR|locus:2197838 IAA12 "indole-3-acetic acid inducible 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 514 (186.0 bits), Expect = 1.3e-51, Sum P(2) = 1.3e-51
 Identities = 111/202 (54%), Positives = 139/202 (68%)

Query:    91 DYVAAGTKRSSDSV----AAANGSSQVVGWPPIRAYRMNSMVN-QAKSVASEEYNSMMEN 145
             D+ + G+KRS++S     A+   SSQVVGWPPI  +RMNS+VN QA   A  E     + 
Sbjct:    44 DFPSVGSKRSAESSSHQGASPPRSSQVVGWPPIGLHRMNSLVNNQAMKAARAEEGDGEKK 103

Query:   146 KRKNSLVEKTTDVCSKNSASAKGRTSPFVKVNMDGIPIGRKIDLNAHGCYESLVQTLEDM 205
               KN   ++  DV  K +   +G    FVKVNMDG+ IGRK+D+ AH  YE+L QTLE+M
Sbjct:   104 VVKN---DELKDVSMKVNPKVQGLG--FVKVNMDGVGIGRKVDMRAHSSYENLAQTLEEM 158

Query:   206 FHQPTTRSSVQEPTRPSKLLDGTSDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRT 265
             F    T ++ +E  +P +LLDG+SD+VLTYEDKEGDWMLVGDVPW MF+ SVKRLRIM T
Sbjct:   159 FFG-MTGTTCREKVKPLRLLDGSSDFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRIMGT 217

Query:   266 SEATGLAPRLQESNGRQRNRPI 287
             SEA+GLAPR QE   RQRN P+
Sbjct:   218 SEASGLAPRRQEQKDRQRNNPV 239

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009733 "response to auxin stimulus" evidence=IGI

GO:0009880 "embryonic pattern specification" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0010051 "xylem and phloem pattern formation" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0048364 "root development" evidence=IMP

TAIR|locus:2139890 IAA11 "indole-3-acetic acid inducible 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 512 (185.3 bits), Expect = 1.6e-51, Sum P(2) = 1.6e-51
 Identities = 114/183 (62%), Positives = 130/183 (71%)

Query:    93 VAAGTKRSSDSVAAANGSSQVVGWPPIRAYRMNSMVNQAKSVASEEYNSMMENKRKNSLV 152
             V AG KR++DS+AA +G  QVVGWPPIR YRMNSMVNQAK+ A+E+ N           +
Sbjct:    71 VIAGIKRTADSMAATSG--QVVGWPPIRTYRMNSMVNQAKASATEDPN-----------L 117

Query:   153 EKTTDVCSKNSASAKGRTSPFVKVNMDGIPIGRKIDLNAHGCYESLVQTLEDMFHQPTTR 212
             E +  V    S S K R S FVKV MDGIPIGRKIDLNAH CYESL  TLE+MF +P   
Sbjct:   118 EISQAVNKNRSDSTKMRNSMFVKVTMDGIPIGRKIDLNAHKCYESLSNTLEEMFLKPKLG 177

Query:   213 SSVQEPT----RPSKLL-DGTSDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSE 267
             S   E       P K+L DG+S  VLTYEDKEGDWMLVGDVPWGMF+GSV+RLRIM+TSE
Sbjct:   178 SRTLETDGHMETPVKILPDGSSGLVLTYEDKEGDWMLVGDVPWGMFIGSVRRLRIMKTSE 237

Query:   268 ATG 270
             ATG
Sbjct:   238 ATG 240

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009506 "plasmodesma" evidence=IDA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2020255 IAA10 "indoleacetic acid-induced protein 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 104/191 (54%), Positives = 134/191 (70%)

Query:    95 AGTKRSSDS--VAAANGSSQV-VGWPPIRAYRMNSMVNQAKSVASEE-YNSMMENKRKNS 150
             +GTKRS+DS   AA+N + QV VGWPP+R YR+NS+VNQAKS+A+E   +S ++ +   S
Sbjct:    73 SGTKRSADSSPAAASNATRQVAVGWPPLRTYRINSLVNQAKSLATEGGLSSGIQKETTKS 132

Query:   151 LV--EKTTDVCSKNSASAKGRTSPFVKVNMDGIPIGRKIDLNAHGCYESLVQTLEDMFHQ 208
             +V   K  D C   S+    RTS  VKV MDG+ IGRK+DLNA   Y +L +TL+ MF Q
Sbjct:   133 VVVAAKNDDACFIKSS----RTSMLVKVTMDGVIIGRKVDLNALDSYAALEKTLDLMFFQ 188

Query:   209 ---PTTRSSVQ-----EPTRPSKLLDGTSDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRL 260
                P TRS+ Q     + T  SKLLDG+S+Y++TY+DK+GDWMLVGDVPW MFLGSV RL
Sbjct:   189 IPSPVTRSNTQGYKTIKETCTSKLLDGSSEYIITYQDKDGDWMLVGDVPWQMFLGSVTRL 248

Query:   261 RIMRTSEATGL 271
             RIM+TS   G+
Sbjct:   249 RIMKTSIGAGV 259

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=TAS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

UNIPROTKB|Q75GB1 IAA17 "Auxin-responsive protein IAA17" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 277 (102.6 bits), Expect = 3.4e-32, Sum P(2) = 3.4e-32
 Identities = 67/139 (48%), Positives = 84/139 (60%)

Query:   147 RKNSLVEKTTDVCSKNSASAK-GRTSPFVKVNMDGIPIGRKIDLNAHGCYESLVQTLEDM 205
             RKN++        SK  A AK G+   +VKV+MDG P  RK+DL  +  Y+ L   LE M
Sbjct:   127 RKNTMATNQLK-SSKEDAEAKQGQGFLYVKVSMDGAPYLRKVDLKTYKNYKDLSTALEKM 185

Query:   206 FHQPTTRSSVQEPTRPSKLLDGTSDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRT 265
             F   TT       +R     DG  +YVLTYEDK+GDWMLVGDVPW MF  S +RLRIM+ 
Sbjct:   186 FIGFTTGKDGLSESRK----DG--EYVLTYEDKDGDWMLVGDVPWEMFANSCRRLRIMKG 239

Query:   266 SEATGLAPRLQESNGRQRN 284
             S+A GLAPR  + + + RN
Sbjct:   240 SDAIGLAPRAVDKS-KNRN 257

GO:0009733 "response to auxin stimulus" evidence=ISS

UNIPROTKB|Q5NB25 IAA3 "Auxin-responsive protein IAA3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 265 (98.3 bits), Expect = 7.7e-31, Sum P(2) = 7.7e-31
 Identities = 67/140 (47%), Positives = 86/140 (61%)

Query:   147 RKNSLVEKTTDVCS-KNSASAK-GRTSPFVKVNMDGIPIGRKIDLNAHGCYESLVQTLED 204
             RKN++   T  + S K    AK G+   +VKV+MDG P  RK+DL  +  Y+ +   LE 
Sbjct:   134 RKNTMA--TNQIKSNKEDVDAKQGQGFLYVKVSMDGAPYLRKVDLKTYKNYKDMSLGLEK 191

Query:   205 MFHQPTTRSSVQEPTRPSKLLDGTSDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMR 264
             MF      S+ +E     K  DG  +YVLTYEDK+GDWMLVGDVPW MF  S +RLRIM+
Sbjct:   192 MF---IGFSTGKEGAENQK--DG--EYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMK 244

Query:   265 TSEATGLAPRLQESNGRQRN 284
              S+A GLAPR  E + + RN
Sbjct:   245 GSDAIGLAPRAGEKS-KNRN 263

GO:0009733 "response to auxin stimulus" evidence=IC

TAIR|locus:2195820 IAA18 "indole-3-acetic acid inducible 18" [Arabidopsis thaliana (taxid:3702)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 77/198 (38%), Positives = 113/198 (57%)

Query:    90 GDYVAAGTKRSSDSVAAANGSSQVVGWPPIRAYRMNSMVNQAKSVASEEYNSMMENKRKN 149
             G Y +  + +++     A G   VVGWPP+R++R N     +  + ++   S        
Sbjct:    76 GKYFSPSSTKTTSHKRTAPGP--VVGWPPVRSFRKNLASGSSSKLGNDSTTS-----NGV 128

Query:   150 SLVEKTTDVCSKNSASAKGRTSPFVKVNMDGIPIGRKIDLNAHGCYESLVQTLEDMFH-- 207
             +L  +  D  +K +   K +   FVK+NM G+PIGRK+DL+AH  YE L  T++ +F   
Sbjct:   129 TLKNQKCDAAAKTT-EPKRQGGMFVKINMYGVPIGRKVDLSAHNSYEQLSFTVDKLFRGL 187

Query:   208 ---QPTTRSSVQEPTRPSKLLDGTSDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMR 264
                Q    SS+++    + LLDG  +Y LTYED EGD MLVGDVPW MF+ SVKRLR+++
Sbjct:   188 LAAQRDFPSSIEDEKPITGLLDGNGEYTLTYEDNEGDKMLVGDVPWQMFVSSVKRLRVIK 247

Query:   265 TSEATGLAPRLQESNGRQ 282
             TSE   ++  L   NG+Q
Sbjct:   248 TSE---ISSALTYGNGKQ 262

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

UNIPROTKB|Q75GK0 IAA11 "Auxin-responsive protein IAA11" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 263 (97.6 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
 Identities = 60/119 (50%), Positives = 74/119 (62%)

Query:   161 KNSASAKGRTSPFVKVNMDGIPIGRKIDLNAHGCYESLVQTLEDMFHQPTTRS--SVQEP 218
             KN  + K + +  VKV+MDG P  RKID+  +  Y  L    ++MF   T     S Q+ 
Sbjct:   112 KNVLAEKCKAAALVKVSMDGAPYLRKIDVAMYKSYPELSMAFQNMFTSFTIGKCGSHQQL 171

Query:   219 TRPSKLLDGTSDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGLAPRLQE 277
                +KL D   +YV TYEDK+GDWMLVGDVPW MF+ S KRLRIM+ SEA GLAPR  E
Sbjct:   172 KESNKLRDDL-EYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAVE 229

GO:0009733 "response to auxin stimulus" evidence=IC

TAIR|locus:2169955 IAA9 "indole-3-acetic acid inducible 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 2.9e-29, Sum P(2) = 2.9e-29
 Identities = 68/147 (46%), Positives = 83/147 (56%)

Query:   147 RKNSLVEKTTDVCSKNSASAKGRTSP---FVKVNMDGIPIGRKIDLNAHGCYESLVQTLE 203
             RKN+L   TT  C KNS    GR      FVKV+MDG P  RK+DL ++  Y  L   LE
Sbjct:   194 RKNTLA--TT--C-KNSDEVDGRPGSGALFVKVSMDGAPYLRKVDLRSYTNYGELSSALE 248

Query:   204 DMFHQPT---------TRSSVQEPTRPSKLLDGTSDYVLTYEDKEGDWMLVGDVPWGMFL 254
              MF   T             +   T+   LL+G  DYVLTYEDK+GDWMLVGDVPW MF+
Sbjct:   249 KMFTTFTLGQCGSNGAAGKDMLSETKLKDLLNG-KDYVLTYEDKDGDWMLVGDVPWEMFI 307

Query:   255 GSVKRLRIMRTSEATGLA--PRLQESN 279
                K+L+IM+  +A GLA  PR  E +
Sbjct:   308 DVCKKLKIMKGCDAIGLAAAPRAMEKS 334

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009734 "auxin mediated signaling pathway" evidence=TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=TAS

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

TAIR|locus:2084933 IAA16 "indoleacetic acid-induced protein 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 76/182 (41%), Positives = 101/182 (55%)

Query:   102 DSVAAANGSSQVVGWPPIRAYRMNSMVNQAKSVASEEYNSMMENKRKNSLVEKTTDVCSK 161
             + V      +QVVGWPP+R++R N M  Q  +       +           +KT+     
Sbjct:    60 EKVVKPPAKAQVVGWPPVRSFRKNVMSGQKPTTGDATEGN-----------DKTSGSSGA 108

Query:   162 NSASAKGRTSPFVKVNMDGIPIGRKIDLNAHGCYESLVQTLEDMFHQPTTRS----SVQE 217
              S+++   T  +VKV+MDG P  RKIDL  +  Y+ L   L  MF   T  +     +++
Sbjct:   109 TSSASACATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQGMKD 168

Query:   218 PTRPSKLLD--GTSDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGLAPRL 275
                 SKL+D    SDYV TYEDK+GDWMLVGDVPW MF+ S KR+RIM+ SEA GLAPR 
Sbjct:   169 FMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGSEAIGLAPRA 228

Query:   276 QE 277
              E
Sbjct:   229 LE 230

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q38829	IAA11_ARATH	No assigned EC number	0.5447	0.7839	0.9146	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	287
pfam02309	188	pfam02309, AUX_IAA, AUX/IAA family	4e-53

>gnl|CDD|216968 pfam02309, AUX_IAA, AUX/IAA family

 Score =  171 bits (435), Expect = 4e-53
 Identities = 77/207 (37%), Positives = 97/207 (46%), Gaps = 55/207 (26%)

Query: 70  FSSVVSSSSCLSSSSSSLSRGDYVAAGTKRSSDSVAAANGSSQVVGWPPIRAYRMNSMVN 129
           FS V       S            +  +  S+   A     +QVVGWPP+R+YR NS+  
Sbjct: 34  FSEVTEDGISSSLGEDK-------STISVSSNGDSAKPPAKAQVVGWPPVRSYRKNSL-- 84

Query: 130 QAKSVASEEYNSMMENKRKNSLVEKTTDVCSKNSASAKGRTSPFVKVNMDGIPIGRKIDL 189
                                                + ++  +VKV+MDG P  RK+DL
Sbjct: 85  ------------------------------------REKKSGSYVKVSMDGAPYLRKVDL 108

Query: 190 NAHGCYESLVQTLEDMFHQPTTRSSVQEPTRPSKLLDG--TSDYVLTYEDKEGDWMLVGD 247
             +  Y+ L   LE MF   T    + E    S LLD    S+YV TYEDK+GDWMLVGD
Sbjct: 109 KMYKSYDELSSALEKMFSCFT----IGE----SGLLDLLNGSEYVPTYEDKDGDWMLVGD 160

Query: 248 VPWGMFLGSVKRLRIMRTSEATGLAPR 274
           VPW MF+ S KRLRIM+ SEA GLAPR
Sbjct: 161 VPWEMFVESCKRLRIMKGSEAIGLAPR 187

Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain. Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	287
PF02309	215	AUX_IAA: AUX/IAA family; InterPro: IPR003311 The A	100.0
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	97.43
cd06398	91	PB1_Joka2 The PB1 domain is present in the Nicotia	97.22
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	97.06
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	96.92
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	96.83
cd06396	81	PB1_NBR1 The PB1 domain is an essential part of NB	96.6
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	95.81
cd06401	81	PB1_TFG The PB1 domain found in TFG protein, an on	95.6
cd06403	80	PB1_Par6 The PB1 domain is an essential part of Pa	95.51
cd06404	83	PB1_aPKC PB1 domain is an essential modular domain	95.36
cd06402	87	PB1_p62 The PB1 domain is an essential part of p62	94.5
cd06397	82	PB1_UP1 Uncharacterized protein 1. The PB1 domain	92.5
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	90.87

>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []

Probab=100.00  E-value=1.9e-63  Score=443.68  Aligned_cols=210  Identities=45%  Similarity=0.680  Sum_probs=6.0

Q ss_pred             CCCccceeeccccccCCCCC--ccccccccCCCCCCCccccccccccCCccccccCccCCCCCCCCCCCcccccCcccCC
Q 023104           24 SSPVESELELGLGLSLGGGG--FIKAQQQASGGGGGGGQYARILTAKDFSSVVSSSSCLSSSSSSLSRGDYVAAGTKRSS  101 (287)
Q Consensus        24 ~~~~etEL~LGLpg~~gg~~--~~~~~~~~~~~krgfset~dlL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kr~~  101 (287)
                      ++|++|||||||||+.....  .........+.||+|+++++.-.......   .... .....  .... .........
T Consensus         1 ln~~~TELrLGLPG~~~~~~~~~~~~~~~~~~~kR~F~~aid~~~~~~~~~---~~~~-~~~~~--~~~~-~~~~~~~~~   73 (215)
T PF02309_consen    1 LNLKATELRLGLPGSESPDASSSSSSKKSSSGNKRGFSEAIDSSSSNSQSS---SSSS-SDSSS--SSSS-SSTSSSSSD   73 (215)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCchhhhhcccCCCCCCCCcccccccccccCcccccchhhhhhcccccccc---cccc-cccCc--cccc-ccccccccc
Confidence            47899999999999632110  01222345688999999988843211110   0000 00000  0000 000111111


Q ss_pred             CCc-cCCCCCCCcccCCcchhhhhhhccccccccchhhhhhhhhhcccccccccccccccccccccCCCCCCceEEEecC
Q 023104          102 DSV-AAANGSSQVVGWPPIRAYRMNSMVNQAKSVASEEYNSMMENKRKNSLVEKTTDVCSKNSASAKGRTSPFVKVNMDG  180 (287)
Q Consensus       102 ~~~-~~p~akaqVVGWPPVRS~RkN~~~~q~~~~~~e~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~VKV~MdG  180 (287)
                      .+. ..|.+++|||||||||+||+|++...+.                                   ....+||||+|||
T Consensus        74 ~~~~~~p~~~~~~vgwpp~~s~r~n~~~~~~~-----------------------------------~~~~~~vKV~mdG  118 (215)
T PF02309_consen   74 SSSSSPPASKAQVVGWPPVRSFRKNSLSEKQS-----------------------------------SSSRSYVKVNMDG  118 (215)
T ss_dssp             ------------BTTBS----S----------------------------------------------------------
T ss_pred             cccCCCCcccccccCCCccccccccccccccc-----------------------------------ccCCceeEEEecC
Confidence            122 2345789999999999999999872110                                   1125799999999


Q ss_pred             cccceeeecCCCCChHHHHHHHHHhhCCCCCCCCCCCCCCCCcCCC--CCCCeEEEEEeCCCCeEEccCCChHHHhhccc
Q 023104          181 IPIGRKIDLNAHGCYESLVQTLEDMFHQPTTRSSVQEPTRPSKLLD--GTSDYVLTYEDKEGDWMLVGDVPWGMFLGSVK  258 (287)
Q Consensus       181 ~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~g~~g~~~~~~~kL~d--~~seyvltYeDkeGDwMLVGDvPW~mFv~svK  258 (287)
                      +||||||||++|+||++|+.+|++||.+|.++..+.+..++.++++  ++++|+|||||+||||||||||||+|||++||
T Consensus       119 ~~igRkVDL~~~~sY~~L~~~L~~MF~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~Y~D~egd~mlvGD~PW~~F~~~vk  198 (215)
T PF02309_consen  119 VPIGRKVDLSAYSSYEELSSALEKMFSCFSIEQCGSHGLNESGLLDLLNGSEYVLVYEDKEGDWMLVGDVPWEEFVKSVK  198 (215)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccceecCHHHhhCHHHHHHHHHHhcCCCCccccccccccchhhccccCCcceeEEEECCCCCEEEecCCCHHHHHHHhh
Confidence            9999999999999999999999999988766433323334444444  45799999999999999999999999999999


Q ss_pred             eeEEecCccccCCcchh
Q 023104          259 RLRIMRTSEATGLAPRL  275 (287)
Q Consensus       259 RLrImk~sea~gl~~r~  275 (287)
                      |||||+.+|++||+||+
T Consensus       199 Rl~I~~~~e~~~~~~r~  215 (215)
T PF02309_consen  199 RLRIMKSSEAKGLAPRA  215 (215)
T ss_dssp             -----------------
T ss_pred             ccEEecHHHhcccCCCC
Confidence            99999999999999986

The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=97.43  E-value=0.00041  Score=52.39  Aligned_cols=67  Identities=27%  Similarity=0.419  Sum_probs=53.8

Q ss_pred             ceEEEecCcccceeeecCCCCChHHHHHHHHHhhCCCCCCCCCCCCCCCCcCCCCCCCeEEEEEeCCCCeEEcc-CCChH
Q 023104          173 FVKVNMDGIPIGRKIDLNAHGCYESLVQTLEDMFHQPTTRSSVQEPTRPSKLLDGTSDYVLTYEDKEGDWMLVG-DVPWG  251 (287)
Q Consensus       173 ~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~g~~g~~~~~~~kL~d~~seyvltYeDkeGDwMLVG-DvPW~  251 (287)
                      -|||...|. +=|.+.+..--+|.+|...+++.|.     ..             ...+.+.|.|.||||..+- |.=|.
T Consensus         3 ~vK~~~~~~-~~~~~~~~~~~s~~~L~~~i~~~~~-----~~-------------~~~~~l~Y~D~dgD~V~i~sd~Dl~   63 (84)
T PF00564_consen    3 RVKVRYGGD-IRRIISLPSDVSFDDLRSKIREKFG-----LL-------------DEDFQLKYKDEDGDLVTISSDEDLQ   63 (84)
T ss_dssp             EEEEEETTE-EEEEEEECSTSHHHHHHHHHHHHHT-----TS-------------TSSEEEEEEETTSSEEEESSHHHHH
T ss_pred             EEEEEECCe-eEEEEEcCCCCCHHHHHHHHHHHhC-----CC-------------CccEEEEeeCCCCCEEEeCCHHHHH
Confidence            478999886 3345888888899999999999994     21             2579999999999999887 44578


Q ss_pred             HHhhccc
Q 023104          252 MFLGSVK  258 (287)
Q Consensus       252 mFv~svK  258 (287)
                      +.+..++
T Consensus        64 ~a~~~~~   70 (84)
T PF00564_consen   64 EAIEQAK   70 (84)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777775

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein

Probab=97.22  E-value=0.0012  Score=52.98  Aligned_cols=68  Identities=22%  Similarity=0.310  Sum_probs=52.5

Q ss_pred             ceEEEecCcccceeeecC---CCCChHHHHHHHHHhhCCCCCCCCCCCCCCCCcCCCCCCCeEEEEEeCCCCeEEccCCC
Q 023104          173 FVKVNMDGIPIGRKIDLN---AHGCYESLVQTLEDMFHQPTTRSSVQEPTRPSKLLDGTSDYVLTYEDKEGDWMLVGDVP  249 (287)
Q Consensus       173 ~VKV~MdG~pigRKVDL~---~~~sY~eL~~aLe~MF~~~~~g~~g~~~~~~~kL~d~~seyvltYeDkeGDwMLVGDvP  249 (287)
                      -|||..+|.-+=-++++.   ..-+|++|.+.+.+.|.     +            ....+|+|.|.|.||||..+-.. 
T Consensus         2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~-----l------------~~~~~~~l~Y~Dedgd~V~l~~D-   63 (91)
T cd06398           2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFS-----L------------SPDADLSLTYTDEDGDVVTLVDD-   63 (91)
T ss_pred             EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhC-----C------------CCCCcEEEEEECCCCCEEEEccH-
Confidence            489999997444455543   46799999999999994     1            12368999999999999998766 


Q ss_pred             hHHHhhccce
Q 023104          250 WGMFLGSVKR  259 (287)
Q Consensus       250 W~mFv~svKR  259 (287)
                       ++|...+.+
T Consensus        64 -~DL~~a~~~   72 (91)
T cd06398          64 -NDLTDAIQY   72 (91)
T ss_pred             -HHHHHHHHH
Confidence             777776665

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=97.06  E-value=0.0025  Score=50.21  Aligned_cols=55  Identities=22%  Similarity=0.354  Sum_probs=43.5

Q ss_pred             eEEEecCcccceeeecCCCCChHHHHHHHHHhhCCCCCCCCCCCCCCCCcCCCCCCCeEEEEEeCCCCeEEccC
Q 023104          174 VKVNMDGIPIGRKIDLNAHGCYESLVQTLEDMFHQPTTRSSVQEPTRPSKLLDGTSDYVLTYEDKEGDWMLVGD  247 (287)
Q Consensus       174 VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~g~~g~~~~~~~kL~d~~seyvltYeDkeGDwMLVGD  247 (287)
                      |||...|.  -+.+-|..--+|++|.+.+.++|.     +.            ....|.|-|.|.||||.++--
T Consensus         3 vK~~~~~d--~~r~~l~~~~~~~~L~~~i~~r~~-----~~------------~~~~f~LkY~Ddegd~v~lts   57 (82)
T cd06407           3 VKATYGEE--KIRFRLPPSWGFTELKQEIAKRFK-----LD------------DMSAFDLKYLDDDEEWVLLTC   57 (82)
T ss_pred             EEEEeCCe--EEEEEcCCCCCHHHHHHHHHHHhC-----CC------------CCCeeEEEEECCCCCeEEeec
Confidence            89999886  355666666699999999999994     21            125899999999999998753

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>smart00666 PB1 PB1 domain

Probab=96.92  E-value=0.0053  Score=46.29  Aligned_cols=65  Identities=20%  Similarity=0.369  Sum_probs=50.7

Q ss_pred             eEEEecCcccceeeecCCCCChHHHHHHHHHhhCCCCCCCCCCCCCCCCcCCCCCCCeEEEEEeCCCCeEEcc-CCChHH
Q 023104          174 VKVNMDGIPIGRKIDLNAHGCYESLVQTLEDMFHQPTTRSSVQEPTRPSKLLDGTSDYVLTYEDKEGDWMLVG-DVPWGM  252 (287)
Q Consensus       174 VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~g~~g~~~~~~~kL~d~~seyvltYeDkeGDwMLVG-DvPW~m  252 (287)
                      |||.-.|  --|.+-+..--+|.+|...|.+.|.     ..             ...+.|.|+|.||||..+. |.=|.+
T Consensus         4 vK~~~~~--~~~~~~~~~~~s~~dL~~~i~~~~~-----~~-------------~~~~~l~Y~Dedgd~v~l~sd~Dl~~   63 (81)
T smart00666        4 VKLRYGG--ETRRLSVPRDISFEDLRSKVAKRFG-----LD-------------NQSFTLKYQDEDGDLVSLTSDEDLEE   63 (81)
T ss_pred             EEEEECC--EEEEEEECCCCCHHHHHHHHHHHhC-----CC-------------CCCeEEEEECCCCCEEEecCHHHHHH
Confidence            6787754  3577888888999999999999994     11             1468999999999998766 456777


Q ss_pred             Hhhccc
Q 023104          253 FLGSVK  258 (287)
Q Consensus       253 Fv~svK  258 (287)
                      .+..++
T Consensus        64 a~~~~~   69 (81)
T smart00666       64 AIEEYD   69 (81)
T ss_pred             HHHHHH
Confidence            777665

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=96.83  E-value=0.0066  Score=45.48  Aligned_cols=66  Identities=20%  Similarity=0.312  Sum_probs=50.5

Q ss_pred             ceEEEecCcccceeeecC-CCCChHHHHHHHHHhhCCCCCCCCCCCCCCCCcCCCCCCCeEEEEEeCCCCeEEccC-CCh
Q 023104          173 FVKVNMDGIPIGRKIDLN-AHGCYESLVQTLEDMFHQPTTRSSVQEPTRPSKLLDGTSDYVLTYEDKEGDWMLVGD-VPW  250 (287)
Q Consensus       173 ~VKV~MdG~pigRKVDL~-~~~sY~eL~~aLe~MF~~~~~g~~g~~~~~~~kL~d~~seyvltYeDkeGDwMLVGD-vPW  250 (287)
                      -|||+-.|.  -|.+=+. ..-+|++|...|.+.|.     ..             ...+.+.|.|.||||..+.+ .=|
T Consensus         2 ~vK~~~~~~--~~~~~~~~~~~s~~~L~~~i~~~~~-----~~-------------~~~~~l~y~D~e~d~v~l~sd~Dl   61 (81)
T cd05992           2 RVKVKYGGE--IRRFVVVSRSISFEDLRSKIAEKFG-----LD-------------AVSFKLKYPDEDGDLVTISSDEDL   61 (81)
T ss_pred             cEEEEecCC--CEEEEEecCCCCHHHHHHHHHHHhC-----CC-------------CCcEEEEeeCCCCCEEEeCCHHHH
Confidence            378888764  2455555 88899999999999994     11             14789999999999999887 567


Q ss_pred             HHHhhccc
Q 023104          251 GMFLGSVK  258 (287)
Q Consensus       251 ~mFv~svK  258 (287)
                      ++.++.++
T Consensus        62 ~~a~~~~~   69 (81)
T cd05992          62 EEAIEEAR   69 (81)
T ss_pred             HHHHHHHh
Confidence            77776665

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62

Probab=96.60  E-value=0.0077  Score=47.88  Aligned_cols=53  Identities=19%  Similarity=0.261  Sum_probs=44.9

Q ss_pred             eEEEecCcccceeeecCCCCChHHHHHHHHHhhCCCCCCCCCCCCCCCCcCCCCCCCeEEEEEeCCCCeEEcc
Q 023104          174 VKVNMDGIPIGRKIDLNAHGCYESLVQTLEDMFHQPTTRSSVQEPTRPSKLLDGTSDYVLTYEDKEGDWMLVG  246 (287)
Q Consensus       174 VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~g~~g~~~~~~~kL~d~~seyvltYeDkeGDwMLVG  246 (287)
                      |||...|.-+=-+++-+..-+|++|...+.++|.     +            +   .|.|.|-|.||||.++=
T Consensus         3 vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~-----l------------~---~f~lKYlDde~e~v~ls   55 (81)
T cd06396           3 LKVTYNGESQSFLVSDSENTTWASVEAMVKVSFG-----L------------N---DIQIKYVDEENEEVSVN   55 (81)
T ss_pred             EEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhC-----C------------C---cceeEEEcCCCCEEEEE
Confidence            7899999877777777778899999999999994     1            1   57899999999998874

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=95.81  E-value=0.02  Score=45.97  Aligned_cols=51  Identities=27%  Similarity=0.367  Sum_probs=38.6

Q ss_pred             cccceeeecC--CCCChHHHHHHHHHhhCCCCCCCCCCCCCCCCcCCCCCCCeEEEEEeCCCCeEEcc
Q 023104          181 IPIGRKIDLN--AHGCYESLVQTLEDMFHQPTTRSSVQEPTRPSKLLDGTSDYVLTYEDKEGDWMLVG  246 (287)
Q Consensus       181 ~pigRKVDL~--~~~sY~eL~~aLe~MF~~~~~g~~g~~~~~~~kL~d~~seyvltYeDkeGDwMLVG  246 (287)
                      .|-||.+=++  ...||.+|..++.+=|.     ++..          ....|.|.|.|.||||.|+-
T Consensus         7 ~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~-----~d~~----------~~~~~~L~YlDDEgD~VllT   59 (86)
T cd06409           7 DPKGRVHRFRLRPSESLEELRTLISQRLG-----DDDF----------ETHLYALSYVDDEGDIVLIT   59 (86)
T ss_pred             CCCCCEEEEEecCCCCHHHHHHHHHHHhC-----Cccc----------cCCcccEEEEcCCCCEEEEe
Confidence            4566665444  47899999999999993     3321          13579999999999999875

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK

Probab=95.60  E-value=0.061  Score=42.96  Aligned_cols=72  Identities=19%  Similarity=0.462  Sum_probs=47.2

Q ss_pred             eEEEecCcccceeeecCCC-CChHHHHHHHHHhhCCCCCCCCCCCCCCCCcCCCCCCCeEEEEEeCCCCeEEccCC---C
Q 023104          174 VKVNMDGIPIGRKIDLNAH-GCYESLVQTLEDMFHQPTTRSSVQEPTRPSKLLDGTSDYVLTYEDKEGDWMLVGDV---P  249 (287)
Q Consensus       174 VKV~MdG~pigRKVDL~~~-~sY~eL~~aLe~MF~~~~~g~~g~~~~~~~kL~d~~seyvltYeDkeGDwMLVGDv---P  249 (287)
                      +|+...|. | |.+=+..- -+|.+|...+++.|..        .+       -....+.+.|.|.|||+.-+-+-   -
T Consensus         3 iK~~~g~D-i-R~~~~~~~~~t~~~L~~~v~~~F~~--------~~-------~~~~~flIKYkD~dGDlVTIts~~dL~   65 (81)
T cd06401           3 LKAQLGDD-I-RRIPIHNEDITYDELLLMMQRVFRG--------KL-------GSSDDVLIKYKDEDGDLITIFDSSDLS   65 (81)
T ss_pred             EEEEeCCe-E-EEEeccCccccHHHHHHHHHHHhcc--------cc-------CCcccEEEEEECCCCCEEEeccHHHHH
Confidence            56666553 5 44443332 3999999999999951        00       12358999999999999999875   3


Q ss_pred             hHHHhhccceeEE
Q 023104          250 WGMFLGSVKRLRI  262 (287)
Q Consensus       250 W~mFv~svKRLrI  262 (287)
                      |..=+...+||+|
T Consensus        66 ~A~~~~~~~~l~~   78 (81)
T cd06401          66 FAIQCSRILKLTL   78 (81)
T ss_pred             HHHhcCcceEEEE
Confidence            3322333445554

The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.

>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=95.51  E-value=0.075  Score=42.38  Aligned_cols=67  Identities=27%  Similarity=0.403  Sum_probs=47.5

Q ss_pred             eEEEecCcccceeeecCCCCChHHHHHHHHHhhCCCCCCCCCCCCCCCCcCCCCCCCeEEEEEeCCCCeEEcc-CCChHH
Q 023104          174 VKVNMDGIPIGRKIDLNAHGCYESLVQTLEDMFHQPTTRSSVQEPTRPSKLLDGTSDYVLTYEDKEGDWMLVG-DVPWGM  252 (287)
Q Consensus       174 VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~g~~g~~~~~~~kL~d~~seyvltYeDkeGDwMLVG-DvPW~m  252 (287)
                      ||...|.+--=-.+|.....+|++++.-|+.||.     +.             .-.|+|-|.|.+||.+=+- |+-+..
T Consensus         3 VKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~-----l~-------------~~~f~i~Y~D~~gDLLPInNDdNf~k   64 (80)
T cd06403           3 VKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHH-----IP-------------NVDFLIGYTDPHGDLLPINNDDNFLK   64 (80)
T ss_pred             eecccCCeEEEEEeccccCcCHHHHHHHHHHHhC-----CC-------------CCcEEEEEeCCCCCEecccCcHHHHH
Confidence            5555655422224555566999999999999994     21             2589999999999999776 445555


Q ss_pred             Hhhccc
Q 023104          253 FLGSVK  258 (287)
Q Consensus       253 Fv~svK  258 (287)
                      =+.+++
T Consensus        65 Alssa~   70 (80)
T cd06403          65 ALSSAN   70 (80)
T ss_pred             HHHcCC
Confidence            555666

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The

>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=95.36  E-value=0.052  Score=43.51  Aligned_cols=56  Identities=25%  Similarity=0.312  Sum_probs=44.1

Q ss_pred             eEEEecCcccceeeecCCCCChHHHHHHHHHhhCCCCCCCCCCCCCCCCcCCCCCCCeEEEEEeCCCCeEEccCC
Q 023104          174 VKVNMDGIPIGRKIDLNAHGCYESLVQTLEDMFHQPTTRSSVQEPTRPSKLLDGTSDYVLTYEDKEGDWMLVGDV  248 (287)
Q Consensus       174 VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~g~~g~~~~~~~kL~d~~seyvltYeDkeGDwMLVGDv  248 (287)
                      +|++-.|.-+--.+|.  .-+|++|.+.+.+||..                 .....|++.|.|.|||-.-+...
T Consensus         3 ~K~~y~gdi~it~~d~--~~s~e~L~~~v~~~c~~-----------------~~~q~ft~kw~DEEGDp~tiSS~   58 (83)
T cd06404           3 VKAAYNGDIMITSIDP--SISLEELCNEVRDMCRF-----------------HNDQPFTLKWIDEEGDPCTISSQ   58 (83)
T ss_pred             EEEEecCcEEEEEcCC--CcCHHHHHHHHHHHhCC-----------------CCCCcEEEEEECCCCCceeecCH
Confidence            7899999755555665  77899999999999951                 12357999999999998877654

PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,

>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover

Probab=94.50  E-value=0.17  Score=40.68  Aligned_cols=59  Identities=24%  Similarity=0.375  Sum_probs=43.0

Q ss_pred             ceEEEecC---cccceeeec--CCCCChHHHHHHHHHhhCCCCCCCCCCCCCCCCcCCCCCCCeEEEEEeCCCCeEEccC
Q 023104          173 FVKVNMDG---IPIGRKIDL--NAHGCYESLVQTLEDMFHQPTTRSSVQEPTRPSKLLDGTSDYVLTYEDKEGDWMLVGD  247 (287)
Q Consensus       173 ~VKV~MdG---~pigRKVDL--~~~~sY~eL~~aLe~MF~~~~~g~~g~~~~~~~kL~d~~seyvltYeDkeGDwMLVGD  247 (287)
                      +||.+..|   .+==|++=|  ....+|++|...+.++|..    .             ....|++.|.|.|||..-+..
T Consensus         2 ~vkayl~~~~~~~EIRRf~l~~~~~~s~~~L~~~V~~~f~~----l-------------~~~~ftlky~DeeGDlvtIss   64 (87)
T cd06402           2 TVKAYLLGKDANAEIRRFAIDEDVSTSYEYLVEKVAAVFPS----L-------------RGKNFQLFWKDEEGDLVAFSS   64 (87)
T ss_pred             eEEEeecCCCCccceEEEEecCCCCcCHHHHHHHHHHHccc----c-------------CCCcEEEEEECCCCCEEeecC
Confidence            57777766   222354444  6667999999999999941    1             125899999999999988765


Q ss_pred             C
Q 023104          248 V  248 (287)
Q Consensus       248 v  248 (287)
                      .
T Consensus        65 d   65 (87)
T cd06402          65 D   65 (87)
T ss_pred             H
Confidence            4

The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06397 PB1_UP1 Uncharacterized protein 1

Probab=92.50  E-value=0.47  Score=38.11  Aligned_cols=66  Identities=21%  Similarity=0.285  Sum_probs=48.8

Q ss_pred             eEEEecCcccceeeecCCCCChHHHHHHHHHhhCCCCCCCCCCCCCCCCcCCCCCCCeEEEEEeCCCCeEEccC-CChHH
Q 023104          174 VKVNMDGIPIGRKIDLNAHGCYESLVQTLEDMFHQPTTRSSVQEPTRPSKLLDGTSDYVLTYEDKEGDWMLVGD-VPWGM  252 (287)
Q Consensus       174 VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~g~~g~~~~~~~kL~d~~seyvltYeDkeGDwMLVGD-vPW~m  252 (287)
                      -||.-+|  -.|++-...-=+|..|...|+.+|+-     .             .-.+.|+|.|.|||..-+-| .=-++
T Consensus         3 fKv~~~g--~~RRf~~~~~pt~~~L~~kl~~Lf~l-----p-------------~~~~~vtYiDeD~D~ITlssd~eL~d   62 (82)
T cd06397           3 FKSSFLG--DTRRIVFPDIPTWEALASKLENLYNL-----P-------------EIKVGVTYIDNDNDEITLSSNKELQD   62 (82)
T ss_pred             EEEEeCC--ceEEEecCCCccHHHHHHHHHHHhCC-----C-------------hhHeEEEEEcCCCCEEEecchHHHHH
Confidence            4777777  46888888889999999999999951     1             11388999999999886554 44555


Q ss_pred             Hhhccce
Q 023104          253 FLGSVKR  259 (287)
Q Consensus       253 Fv~svKR  259 (287)
                      |..-..|
T Consensus        63 ~~~~~~~   69 (82)
T cd06397          63 FYRLSHR   69 (82)
T ss_pred             HHHhccc
Confidence            5554443

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=90.87  E-value=0.9  Score=36.60  Aligned_cols=54  Identities=22%  Similarity=0.333  Sum_probs=43.9

Q ss_pred             ceEEEecCcccceeeecCCCCChHHHHHHHHHhhCCCCCCCCCCCCCCCCcCCCCCCCeEEEEEeCCCCeEEccCC
Q 023104          173 FVKVNMDGIPIGRKIDLNAHGCYESLVQTLEDMFHQPTTRSSVQEPTRPSKLLDGTSDYVLTYEDKEGDWMLVGDV  248 (287)
Q Consensus       173 ~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~g~~g~~~~~~~kL~d~~seyvltYeDkeGDwMLVGDv  248 (287)
                      -|||+-.|.  .|-|-+..-=+|++|...+.++|.     +.              ..++|-|.|. ||..-+++-
T Consensus         4 kVKv~~~~D--v~~i~v~~~i~f~dL~~kIrdkf~-----~~--------------~~~~iKykDE-GD~iti~sq   57 (86)
T cd06408           4 RVKVHAQDD--TRYIMIGPDTGFADFEDKIRDKFG-----FK--------------RRLKIKMKDD-GDMITMGDQ   57 (86)
T ss_pred             EEEEEecCc--EEEEEcCCCCCHHHHHHHHHHHhC-----CC--------------CceEEEEEcC-CCCccccCH
Confidence            489998887  566777777789999999999994     21              3789999999 999888764

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	287
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	95.95
1wmh_B	86	Partitioning defective-6 homolog alpha; kinase, PB	95.44
2kkc_A	102	Sequestosome-1; P62, PB1, autophagy, ubiquitin-pro	94.65
2ktr_A	117	Sequestosome-1; autophagy, NF-KB signaling, HOMO-o	93.25
1q1o_A	98	Cell division control protein 24; PB1 domain, PCCR	88.53
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	85.87
1oey_J	107	P40-PHOX, neutrophil cytosol factor 4; immune syst	80.53

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=95.95  E-value=0.016  Score=45.48  Aligned_cols=57  Identities=21%  Similarity=0.260  Sum_probs=43.6

Q ss_pred             CceEEEecCcccceeeecCCCCChHHHHHHHHHhhCCCCCCCCCCCCCCCCcCCCCCCCeEEEEEeCCCCeEEccC
Q 023104          172 PFVKVNMDGIPIGRKIDLNAHGCYESLVQTLEDMFHQPTTRSSVQEPTRPSKLLDGTSDYVLTYEDKEGDWMLVGD  247 (287)
Q Consensus       172 ~~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~g~~g~~~~~~~kL~d~~seyvltYeDkeGDwMLVGD  247 (287)
                      .=|||+..|.-+  .+.+...-+|++|...|.++|.     ..            ....+++.|.|.|||+.-+-.
T Consensus         7 vkvK~~~~gdi~--~~~v~~~i~~~~L~~kv~~~~~-----~~------------~~~~f~lky~DEeGD~itisS   63 (89)
T 1vd2_A            7 VRVKAYYRGDIM--ITHFEPSISFEGLCNEVRDMCS-----FD------------NEQLFTMKWIDEEGDPCTVSS   63 (89)
T ss_dssp             EEEEEESSSCEE--EEEECTTCCHHHHHHHHHHHTT-----CC------------SSCCEEEEECCSSSCCEECCS
T ss_pred             EEEEEEeCCeEE--EEECCCCCCHHHHHHHHHHHhC-----CC------------CCCeEEEEEECCCCCcccccC
Confidence            578889999744  4444456799999999999994     11            235799999999999976543

>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2

Probab=95.44  E-value=0.036  Score=43.49  Aligned_cols=69  Identities=17%  Similarity=0.139  Sum_probs=50.3

Q ss_pred             CceEEEecCcccceeeecCCCCChHHHHHHHHHhhCCCCCCCCCCCCCCCCcCCCCCCCeEEEEEeCCCCeEEccCC-Ch
Q 023104          172 PFVKVNMDGIPIGRKIDLNAHGCYESLVQTLEDMFHQPTTRSSVQEPTRPSKLLDGTSDYVLTYEDKEGDWMLVGDV-PW  250 (287)
Q Consensus       172 ~~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~g~~g~~~~~~~kL~d~~seyvltYeDkeGDwMLVGDv-PW  250 (287)
                      .-||...|..--=-.||-....+|++|+.-|+++|.     +             ...+|++.|.|.|||++-+=+. =.
T Consensus         7 l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~-----L-------------~~~~f~i~Y~D~dGDLlpInnDdnl   68 (86)
T 1wmh_B            7 VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQ-----I-------------PGLDVLLGYTDAHGDLLPLTNDDSL   68 (86)
T ss_dssp             EEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTT-----C-------------TTCCCEEEEECTTSCEEECCSHHHH
T ss_pred             EEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcC-----C-------------CCCCEEEEEECCCCCEeeecCHHHH
Confidence            468888888643335565677899999999999994     1             1247999999999999988755 33


Q ss_pred             HHHhhccc
Q 023104          251 GMFLGSVK  258 (287)
Q Consensus       251 ~mFv~svK  258 (287)
                      .+=+.++|
T Consensus        69 ~~Al~~a~   76 (86)
T 1wmh_B           69 HRALASGP   76 (86)
T ss_dssp             HHHTTSSS
T ss_pred             HHHHHhCC
Confidence            33344555

>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B

Probab=94.65  E-value=0.061  Score=43.15  Aligned_cols=61  Identities=20%  Similarity=0.230  Sum_probs=44.4

Q ss_pred             CCceEEEecCc----ccceeeecCC-----------CCChHHHHHHHHHhhCCCCCCCCCCCCCCCCcCCCCCCCeEEEE
Q 023104          171 SPFVKVNMDGI----PIGRKIDLNA-----------HGCYESLVQTLEDMFHQPTTRSSVQEPTRPSKLLDGTSDYVLTY  235 (287)
Q Consensus       171 ~~~VKV~MdG~----pigRKVDL~~-----------~~sY~eL~~aLe~MF~~~~~g~~g~~~~~~~kL~d~~seyvltY  235 (287)
                      +.-||++..|.    .-=|++-|..           ..+|++|...++++|..    .             .+..|++.|
T Consensus         5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~----l-------------~~~~f~l~Y   67 (102)
T 2kkc_A            5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPA----L-------------RPGGFQAHY   67 (102)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTT----S-------------CSSCEEEEE
T ss_pred             eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccc----c-------------CCCcEEEEE
Confidence            35788888752    2346655532           24899999999999951    1             124799999


Q ss_pred             EeCCCCeEEccCC
Q 023104          236 EDKEGDWMLVGDV  248 (287)
Q Consensus       236 eDkeGDwMLVGDv  248 (287)
                      .|.|||+.-+-+.
T Consensus        68 ~DedGDlItiSsD   80 (102)
T 2kkc_A           68 RAERGDLVAFSSD   80 (102)
T ss_dssp             ECTTCCEEEECSH
T ss_pred             ECCCCCEEEecCH
Confidence            9999999887755

>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}

Probab=93.25  E-value=0.18  Score=41.47  Aligned_cols=62  Identities=19%  Similarity=0.228  Sum_probs=44.9

Q ss_pred             CCCceEEEecCc----ccceeeecC-----------CCCChHHHHHHHHHhhCCCCCCCCCCCCCCCCcCCCCCCCeEEE
Q 023104          170 TSPFVKVNMDGI----PIGRKIDLN-----------AHGCYESLVQTLEDMFHQPTTRSSVQEPTRPSKLLDGTSDYVLT  234 (287)
Q Consensus       170 ~~~~VKV~MdG~----pigRKVDL~-----------~~~sY~eL~~aLe~MF~~~~~g~~g~~~~~~~kL~d~~seyvlt  234 (287)
                      .+.-||++..|.    .==|++=|.           .-.+|++|...+.++|..    .             .+..|+|.
T Consensus        19 ~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~----L-------------~~~~f~l~   81 (117)
T 2ktr_A           19 GSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPA----L-------------RPGGFQAH   81 (117)
T ss_dssp             -CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTT----S-------------CSSCEEEE
T ss_pred             ccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccc----c-------------CCCcEEEE
Confidence            357899999751    223655554           135999999999999941    1             12479999


Q ss_pred             EEeCCCCeEEccCC
Q 023104          235 YEDKEGDWMLVGDV  248 (287)
Q Consensus       235 YeDkeGDwMLVGDv  248 (287)
                      |.|.|||+.-+-..
T Consensus        82 YkDEdGDlItISsD   95 (117)
T 2ktr_A           82 YRAERGDLVAFSSD   95 (117)
T ss_dssp             EECTTCCEEEECSH
T ss_pred             EECCCCCEEEecCH
Confidence            99999999877654

>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B

Probab=88.53  E-value=0.97  Score=36.09  Aligned_cols=75  Identities=11%  Similarity=0.262  Sum_probs=52.9

Q ss_pred             CCceEEEecCc------ccceeeecCCCCChHHHHHHHHHhhCCCCCCCCCCCCCCCCcCCCCCCCeEEEEEeCCCCeEE
Q 023104          171 SPFVKVNMDGI------PIGRKIDLNAHGCYESLVQTLEDMFHQPTTRSSVQEPTRPSKLLDGTSDYVLTYEDKEGDWML  244 (287)
Q Consensus       171 ~~~VKV~MdG~------pigRKVDL~~~~sY~eL~~aLe~MF~~~~~g~~g~~~~~~~kL~d~~seyvltYeDkeGDwML  244 (287)
                      +.-|||+-+..      .=.|.|=+..--+|++|...+.+-|..+    .+.+.         .....|-|+|.|||+..
T Consensus         5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~----~~~~i---------~~~~klkYkDEdGD~Vt   71 (98)
T 1q1o_A            5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT----HNNNI---------SPITKIKYQDEDGDFVV   71 (98)
T ss_dssp             CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH----CSSCC---------CCCCCEEEECSSSCEEE
T ss_pred             cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC----ccccc---------cceeEEEEEcCCCCEEE
Confidence            35678887742      1236676778889999999999999521    11110         13467999999999988


Q ss_pred             ccC-CChHHHhhccc
Q 023104          245 VGD-VPWGMFLGSVK  258 (287)
Q Consensus       245 VGD-vPW~mFv~svK  258 (287)
                      +++ .=|+|-+.+++
T Consensus        72 l~sddDl~~A~e~~~   86 (98)
T 1q1o_A           72 LGSDEDWNVAKEMLA   86 (98)
T ss_dssp             ECSHHHHHHHHHHHH
T ss_pred             EcCHHHHHHHHHHHH
Confidence            775 57998888763

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=85.87  E-value=3.6  Score=31.75  Aligned_cols=70  Identities=13%  Similarity=0.139  Sum_probs=54.8

Q ss_pred             CceEEEecCcccceeeecCCCCChHHHHHHHHHhhCCCCCCCCCCCCCCCCcCCCCCCCeEEEEEe-CCCCeEEccCCCh
Q 023104          172 PFVKVNMDGIPIGRKIDLNAHGCYESLVQTLEDMFHQPTTRSSVQEPTRPSKLLDGTSDYVLTYED-KEGDWMLVGDVPW  250 (287)
Q Consensus       172 ~~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~g~~g~~~~~~~kL~d~~seyvltYeD-keGDwMLVGDvPW  250 (287)
                      .=|||+-.   +.-.|....=-+|.+|...|.+=+.     .++             .+-+|-|.| .+|.|++.+|.=|
T Consensus         6 ~~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~-----l~~-------------~~~~LsYk~~~s~~~vi~~d~dl   64 (83)
T 1oey_A            6 YTLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLE-----LRL-------------EHTKLSYRPRDSNELVPLSEDSM   64 (83)
T ss_dssp             EEEEEESS---SEEEEEECTTCCHHHHHHHHHHHTT-----CCG-------------GGCCEEECCTTCSSCEECCTTTH
T ss_pred             EEEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhC-----CCc-------------ceeEEEeeCCCCCCeeccChHHH
Confidence            35677766   7788888888999999999999994     332             123488999 6889999999999


Q ss_pred             HHHhhccc--eeEE
Q 023104          251 GMFLGSVK--RLRI  262 (287)
Q Consensus       251 ~mFv~svK--RLrI  262 (287)
                      +.-...++  ||++
T Consensus        65 ~~aw~~~~n~~LtL   78 (83)
T 1oey_A           65 KDAWGQVKNYCLTL   78 (83)
T ss_dssp             HHHHTTCBTTEEEE
T ss_pred             HHHHHhccCCcEEE
Confidence            98888755  6665

>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=80.53  E-value=2.4  Score=34.48  Aligned_cols=41  Identities=27%  Similarity=0.407  Sum_probs=33.0

Q ss_pred             ecCCCCChHHHHHHHHHhhCCCCCCCCCCCCCCCCcCCCCCCCeEEEEEeCCCCeEEccCC
Q 023104          188 DLNAHGCYESLVQTLEDMFHQPTTRSSVQEPTRPSKLLDGTSDYVLTYEDKEGDWMLVGDV  248 (287)
Q Consensus       188 DL~~~~sY~eL~~aLe~MF~~~~~g~~g~~~~~~~kL~d~~seyvltYeDkeGDwMLVGDv  248 (287)
                      ||..--.|.+|..-..+-|.                    ..+-+|-|.|.|||+.-+=|.
T Consensus        28 dl~~~P~ykdLl~lmr~~F~--------------------~~DIaLNYrD~eGDLIrildd   68 (107)
T 1oey_J           28 DLSSTPLLKDLLELTRREFQ--------------------REDIALNYRDAEGDLVRLLSD   68 (107)
T ss_dssp             CTTCCCCHHHHHHHHHHHHC--------------------CSSEEEEEECTTSCEEECCSH
T ss_pred             ccccCCCHHHHHHHHHHHhc--------------------ccceeeeeecCCCCEEEEcch
Confidence            67777899999999999994                    125679999999999765443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	287
d2bkfa1	85	Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum	96.78
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	95.5
d1wmhb_	82	Partitioning defective-6 homolog alpha, PAR-6 alph	84.38

>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.0014  Score=49.55  Aligned_cols=65  Identities=9%  Similarity=0.091  Sum_probs=49.9

Q ss_pred             ceEEEecCcccceeeecCCCCChHHHHHHHHHhhCCCCCCCCCCCCCCCCcCCCCCCCeEEEEEeCCCCeEEcc-CCChH
Q 023104          173 FVKVNMDGIPIGRKIDLNAHGCYESLVQTLEDMFHQPTTRSSVQEPTRPSKLLDGTSDYVLTYEDKEGDWMLVG-DVPWG  251 (287)
Q Consensus       173 ~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~g~~g~~~~~~~kL~d~~seyvltYeDkeGDwMLVG-DvPW~  251 (287)
                      -|||...|..+=-+|-+....+|.+|...|++.|.     +               .++.|.|.|.|+||.++. |.=.+
T Consensus         6 tvKvtf~~dt~RF~ls~~~~~~~~~L~~~i~~rf~-----l---------------~~~~lkY~Ddd~e~v~l~~d~dl~   65 (85)
T d2bkfa1           6 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFD-----L---------------NTIQIKYLDEENEEVSINSQGEYE   65 (85)
T ss_dssp             EEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHT-----C---------------SSEEEEEECTTSCEEEECSHHHHH
T ss_pred             EEEEEECCceEEEEecCCCCCcHHHHHHHHHHhcC-----c---------------ccceEEEEcCCCCEEEEecHHHHH
Confidence            58999988766556767778899999999999993     2               147899999999999876 44445


Q ss_pred             HHhhcc
Q 023104          252 MFLGSV  257 (287)
Q Consensus       252 mFv~sv  257 (287)
                      +.+..+
T Consensus        66 E~~~~a   71 (85)
T d2bkfa1          66 EALKMA   71 (85)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            554433

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.50  E-value=0.011  Score=43.65  Aligned_cols=71  Identities=10%  Similarity=0.120  Sum_probs=51.1

Q ss_pred             CCCceEEEecCcccceeeecCCCCChHHHHHHHHHhhCCCCCCCCCCCCCCCCcCCCCCCCeEEEEEeCCCCeEEcc-CC
Q 023104          170 TSPFVKVNMDGIPIGRKIDLNAHGCYESLVQTLEDMFHQPTTRSSVQEPTRPSKLLDGTSDYVLTYEDKEGDWMLVG-DV  248 (287)
Q Consensus       170 ~~~~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~g~~g~~~~~~~kL~d~~seyvltYeDkeGDwMLVG-Dv  248 (287)
                      ++--|||+.++.-  |.+=|..--+|.+|...+.+.|.     .               ..|+|-|.|.||||..+- |.
T Consensus        11 ~~ikVKv~~~~D~--~~~~l~~~it~~dL~~kI~~rf~-----~---------------~~~~lkY~Dedgd~v~i~sD~   68 (85)
T d1ip9a_          11 KTTKIKFYYKDDI--FALMLKGDTTYKELRSKIAPRID-----T---------------DNFKLQTKLFDGSGEEIKTDS   68 (85)
T ss_dssp             CCEEEEECBTTCC--EEEEECSCCCHHHHHHHHHHHHT-----S---------------SCEEEEECCSSSCCSCCCSHH
T ss_pred             CCEEEEEEECCcE--EEEEeCCCCCHHHHHHHHHHHhC-----C---------------CceEEEEEcCCCCEEEEeCHH
Confidence            4567899988874  44555556789999999999994     1               248999999999998665 44


Q ss_pred             ChHHHhhccceeEE
Q 023104          249 PWGMFLGSVKRLRI  262 (287)
Q Consensus       249 PW~mFv~svKRLrI  262 (287)
                      =+++=++...||.+
T Consensus        69 Dl~~ai~~~~kl~v   82 (85)
T d1ip9a_          69 QVSNIIQAKLKISV   82 (85)
T ss_dssp             HHHHHHHTTCCEEE
T ss_pred             HHHHHHHhcCcEEE
Confidence            45555555545544

>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Partitioning defective-6 homolog alpha, PAR-6 alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.38  E-value=1.3  Score=32.62  Aligned_cols=55  Identities=16%  Similarity=0.208  Sum_probs=42.0

Q ss_pred             eeecCCCCChHHHHHHHHHhhCCCCCCCCCCCCCCCCcCCCCCCCeEEEEEeCCCCeEEccCC-ChHHHhhccc
Q 023104          186 KIDLNAHGCYESLVQTLEDMFHQPTTRSSVQEPTRPSKLLDGTSDYVLTYEDKEGDWMLVGDV-PWGMFLGSVK  258 (287)
Q Consensus       186 KVDL~~~~sY~eL~~aLe~MF~~~~~g~~g~~~~~~~kL~d~~seyvltYeDkeGDwMLVGDv-PW~mFv~svK  258 (287)
                      .+|.....+|++.+.-|+.|-.     +             ..-+|+|.|.|.+||.+-+-.. -+.-=+.+++
T Consensus        17 sl~r~~~~~fe~F~~Lle~~H~-----l-------------~~~~f~i~Y~D~hgDLLPINNDdNf~kA~~sa~   72 (82)
T d1wmhb_          17 ALPRASVSGFQEFSRLLRAVHQ-----I-------------PGLDVLLGYTDAHGDLLPLTNDDSLHRALASGP   72 (82)
T ss_dssp             EEEGGGCCCHHHHHHHHHHHTT-----C-------------TTCCCEEEEECTTSCEEECCSHHHHHHHTTSSS
T ss_pred             eeccccccCHHHHHHHHHHHcC-----C-------------CCCcEEEEEecCCCCcccccCchHHHHHHHhcC
Confidence            5777888999999999999984     2             2357999999999999987644 3333344565