Citrus Sinensis ID: 023107

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------
MEGKEEDVKLGANKFSERQPIGTSAQSDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKSRA
cccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHEEEEEEEccccccccccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHcccccccccEEHHHHHHHHHHHHHHHHHHHHccccccccc
ccccccHEEEcccccccccccccccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccEccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHEccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHcc
megkeedvklgankfserqpigtsaqsdkdykepppaplfepgelkswSFYRAGIAEFMATFLFLYITVLTVMGvsksntkcsTVGIQGIAWAFGGMIFALVYCTagisgghinpaVTFGLLLARKLSLTRAVFYMVMQCLGAVcgagvvkgfegsknyerlggganvvahgytkgdglgaEIIGTFVLVYTVFSatdakrnardshvpilaplpIGFAVFLVHLAtipitgtginparslGAAIIfnkdhawddhwifWVGPFIGAALAAVYHQIVIRaipfksra
megkeedvklgankfserqpigtsaqsdkdykepPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKSRA
MEGKEEDVKLGANKFSERQPIGTSAQSDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKSRA
*******************************************ELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPF****
************************************APLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPF****
********KLGANKFSERQ**************PPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKSRA
****************************KDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFK*R*
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiRRRRRRRRRRiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooRRRRRRRRRRRRRRooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
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MEGKEEDVKLGANKFSERQPIGTSAQSDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKSRA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query287 2.2.26 [Sep-21-2011]
Q7XSQ9288 Probable aquaporin PIP1-2 yes no 0.996 0.993 0.896 1e-150
Q06611286 Aquaporin PIP1-2 OS=Arabi yes no 0.996 1.0 0.891 1e-149
Q6EU94289 Aquaporin PIP1-1 OS=Oryza no no 0.996 0.989 0.875 1e-149
Q9XF59289 Aquaporin PIP1-2 OS=Zea m N/A no 0.996 0.989 0.882 1e-149
Q39196287 Probable aquaporin PIP1-4 no no 0.996 0.996 0.888 1e-149
Q08451286 Probable aquaporin PIP-ty N/A no 0.979 0.982 0.879 1e-145
Q9AQU5292 Aquaporin PIP1-3/PIP1-4 O N/A no 0.996 0.979 0.870 1e-145
Q9AR14288 Aquaporin PIP1-5 OS=Zea m N/A no 0.993 0.989 0.847 1e-142
P25794289 Probable aquaporin PIP-ty N/A no 0.996 0.989 0.844 1e-142
Q08733286 Aquaporin PIP1-3 OS=Arabi no no 0.996 1.0 0.888 1e-141
>sp|Q7XSQ9|PIP12_ORYSJ Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3 Back     alignment and function desciption
 Score =  531 bits (1369), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 259/289 (89%), Positives = 275/289 (95%), Gaps = 3/289 (1%)

Query: 1   MEGKEEDVKLGANKFSERQPIGTSAQ--SDKDYKEPPPAPLFEPGELKSWSFYRAGIAEF 58
           MEGKEEDV+LGANKFSERQPIGT+AQ   DKDYKEPPPAPLFEPGELKSWSFYRAGIAEF
Sbjct: 1   MEGKEEDVRLGANKFSERQPIGTAAQGSDDKDYKEPPPAPLFEPGELKSWSFYRAGIAEF 60

Query: 59  MATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVT 118
           MATFLFLYITVLTVMGV+ S +KC+TVGIQGIAW+FGGMIFALVYCTAGISGGHINPAVT
Sbjct: 61  MATFLFLYITVLTVMGVNNSTSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVT 120

Query: 119 FGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDG 178
           FGL LARKLSLTRA+FYMVMQCLGA+CGAGVVKGF+    YE  GGGANVVA GYTKGDG
Sbjct: 121 FGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQKGL-YETTGGGANVVAPGYTKGDG 179

Query: 179 LGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 238
           LGAEI+GTF+LVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA
Sbjct: 180 LGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 239

Query: 239 RSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKSRA 287
           RSLGAAII+N+ HAWDDHWIFWVGPFIGAALAA+YHQ+VIRAIPFKSR+
Sbjct: 240 RSLGAAIIYNRGHAWDDHWIFWVGPFIGAALAAIYHQVVIRAIPFKSRS 288
Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.
Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q06611|PIP12_ARATH Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1 Back     alignment and function description
>sp|Q6EU94|PIP11_ORYSJ Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q9XF59|PIP12_MAIZE Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1 Back     alignment and function description
>sp|Q39196|PIP14_ARATH Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1 Back     alignment and function description
>sp|Q08451|PIP1_SOLLC Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1 Back     alignment and function description
>sp|Q9AQU5|PIP13_MAIZE Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1 Back     alignment and function description
>sp|Q9AR14|PIP15_MAIZE Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1 Back     alignment and function description
>sp|P25794|PIP2_PEA Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2 Back     alignment and function description
>sp|Q08733|PIP13_ARATH Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query287
89212808287 aquaporin 1 [Gossypium hirsutum] 1.0 1.0 0.944 1e-158
300793582287 TPA_inf: aquaporin PIP1;4 [Gossypium hir 1.0 1.0 0.930 1e-157
345462634299 aquaporin PIP1 [Dimocarpus longan] 1.0 0.959 0.913 1e-156
255537497287 Aquaporin PIP1.3, putative [Ricinus comm 1.0 1.0 0.937 1e-156
257786547287 plasma membrane aquaporin 1 [Hevea brasi 1.0 1.0 0.930 1e-156
150416573287 aquaporin PIP1-2 [Gossypium hirsutum] 0.996 0.996 0.926 1e-155
57336886288 putative plasma membrane intrinsic prote 1.0 0.996 0.937 1e-154
224071930288 aquaporin, MIP family, PIP subfamily [Po 1.0 0.996 0.937 1e-154
8071626287 putative aquaporin PIP1-3 [Vitis cinerea 1.0 1.0 0.916 1e-154
118488812288 unknown [Populus trichocarpa x Populus d 1.0 0.996 0.937 1e-154
>gi|89212808|gb|ABD63904.1| aquaporin 1 [Gossypium hirsutum] Back     alignment and taxonomy information
 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 271/287 (94%), Positives = 281/287 (97%)

Query: 1   MEGKEEDVKLGANKFSERQPIGTSAQSDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMA 60
           MEGKEEDVKLGANKFSERQPIGTSAQ+DKDYKEPPPAPLFEPGELKSWSFYRAGIAEF+A
Sbjct: 1   MEGKEEDVKLGANKFSERQPIGTSAQTDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFVA 60

Query: 61  TFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFG 120
           TFLFLYITVLTVMGVS+S TKC+TVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFG
Sbjct: 61  TFLFLYITVLTVMGVSQSKTKCTTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFG 120

Query: 121 LLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLG 180
           LLLARKLSLTRAVFYM+MQCLGA+CGAGVVKGFEG   YE LGGGANVV HGYTKGDGLG
Sbjct: 121 LLLARKLSLTRAVFYMIMQCLGAICGAGVVKGFEGDSRYEMLGGGANVVNHGYTKGDGLG 180

Query: 181 AEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARS 240
           AEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARS
Sbjct: 181 AEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARS 240

Query: 241 LGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKSRA 287
           LGAAII+NKDHAWDDHWIFWVGPFIGAALAA+YHQI+IRAIPFK+RA
Sbjct: 241 LGAAIIYNKDHAWDDHWIFWVGPFIGAALAAIYHQIIIRAIPFKTRA 287

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|300793582|tpg|DAA33858.1| TPA_inf: aquaporin PIP1;4 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|345462634|gb|AEN95117.1| aquaporin PIP1 [Dimocarpus longan] Back     alignment and taxonomy information
>gi|255537497|ref|XP_002509815.1| Aquaporin PIP1.3, putative [Ricinus communis] gi|223549714|gb|EEF51202.1| Aquaporin PIP1.3, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|257786547|gb|ACV66985.1| plasma membrane aquaporin 1 [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|150416573|gb|ABR68794.1| aquaporin PIP1-2 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|57336886|emb|CAH60718.1| putative plasma membrane intrinsic protein [Populus tremula x Populus tremuloides] Back     alignment and taxonomy information
>gi|224071930|ref|XP_002303596.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] gi|118483041|gb|ABK93430.1| unknown [Populus trichocarpa] gi|222841028|gb|EEE78575.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
>gi|8071626|gb|AAF71819.1|AF141899_1 putative aquaporin PIP1-3 [Vitis cinerea var. helleri x Vitis rupestris] Back     alignment and taxonomy information
>gi|118488812|gb|ABK96216.1| unknown [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query287
TAIR|locus:2025391286 PIP1C "plasma membrane intrins 0.996 1.0 0.888 7.2e-139
TAIR|locus:2126026287 PIP1;4 "plasma membrane intrin 0.996 0.996 0.888 1.5e-138
TAIR|locus:2082822286 PIP1A "plasma membrane intrins 0.996 1.0 0.881 1.9e-138
TAIR|locus:2117939287 PIP1;5 "plasma membrane intrin 0.993 0.993 0.874 3.2e-136
TAIR|locus:2050649301 PIP1B "plasma membrane intrins 0.888 0.847 0.894 5.7e-123
TAIR|locus:2039385278 PIP2;8 "plasma membrane intrin 0.926 0.956 0.715 1.6e-102
TAIR|locus:2061773285 PIP2B "plasma membrane intrins 0.916 0.922 0.729 1.6e-102
TAIR|locus:2131601280 PIP3 "plasma membrane intrinsi 0.891 0.914 0.735 3.3e-102
TAIR|locus:2061763285 RD28 "RESPONSIVE TO DESICCATIO 0.916 0.922 0.722 1.1e-101
TAIR|locus:2084031287 PIP2A "plasma membrane intrins 0.891 0.891 0.733 3e-101
TAIR|locus:2025391 PIP1C "plasma membrane intrinsic protein 1C" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1359 (483.5 bits), Expect = 7.2e-139, P = 7.2e-139
 Identities = 255/287 (88%), Positives = 273/287 (95%)

Query:     1 MEGKEEDVKLGANKFSERQPIGTSAQSDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMA 60
             MEGKEEDV++GANKF ERQPIGTSAQ+DKDYKEPPPAP FEPGEL SWSFYRAGIAEF+A
Sbjct:     1 MEGKEEDVRVGANKFPERQPIGTSAQTDKDYKEPPPAPFFEPGELSSWSFYRAGIAEFIA 60

Query:    61 TFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFG 120
             TFLFLYITVLTVMGV ++   C++VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFG
Sbjct:    61 TFLFLYITVLTVMGVKRAPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFG 120

Query:   121 LLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLG 180
             L LARKLSLTRAVFY+VMQCLGA+CGAGVVKGF+ +  Y+ LGGGAN VAHGYTKG GLG
Sbjct:   121 LFLARKLSLTRAVFYIVMQCLGAICGAGVVKGFQPNP-YQTLGGGANTVAHGYTKGSGLG 179

Query:   181 AEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARS 240
             AEIIGTFVLVYTVFSATDAKR+ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARS
Sbjct:   180 AEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARS 239

Query:   241 LGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKSRA 287
             LGAAII+NKDHAWDDHWIFWVGPFIGAALAA+YHQ+VIRAIPFKSR+
Sbjct:   240 LGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQLVIRAIPFKSRS 286
GO:0005215 "transporter activity" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISM;IDA;TAS
GO:0006810 "transport" evidence=IEA;ISS
GO:0006833 "water transport" evidence=IEA;IDA;RCA
GO:0015250 "water channel activity" evidence=ISS;IDA
GO:0016020 "membrane" evidence=IEA;ISS;IDA
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
GO:0009414 "response to water deprivation" evidence=IEP
GO:0005515 "protein binding" evidence=IPI
GO:0006084 "acetyl-CoA metabolic process" evidence=RCA
GO:0006826 "iron ion transport" evidence=RCA
GO:0010106 "cellular response to iron ion starvation" evidence=RCA
GO:0016126 "sterol biosynthetic process" evidence=RCA
GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA
TAIR|locus:2126026 PIP1;4 "plasma membrane intrinsic protein 1;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082822 PIP1A "plasma membrane intrinsic protein 1A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117939 PIP1;5 "plasma membrane intrinsic protein 1;5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050649 PIP1B "plasma membrane intrinsic protein 1B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039385 PIP2;8 "plasma membrane intrinsic protein 2;8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061773 PIP2B "plasma membrane intrinsic protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131601 PIP3 "plasma membrane intrinsic protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061763 RD28 "RESPONSIVE TO DESICCATION 28" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084031 PIP2A "plasma membrane intrinsic protein 2A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7XSQ9PIP12_ORYSJNo assigned EC number0.89610.99650.9930yesno
Q8LAA6PIP15_ARATHNo assigned EC number0.87450.99300.9930nono
P93004PIP27_ARATHNo assigned EC number0.73540.89190.9142nono
Q9SV31PIP25_ARATHNo assigned EC number0.73180.87800.8811nono
P43287PIP22_ARATHNo assigned EC number0.74520.89190.8982nono
Q9SXF8PIP13_ORYSJNo assigned EC number0.84020.99300.9895nono
Q84RL7PIP21_MAIZENo assigned EC number0.66660.95120.9413N/Ano
Q8H5N9PIP21_ORYSJNo assigned EC number0.70940.89190.8827nono
P30302PIP23_ARATHNo assigned EC number0.72220.91630.9228nono
Q9AQU5PIP13_MAIZENo assigned EC number0.87030.99650.9794N/Ano
Q9AR14PIP15_MAIZENo assigned EC number0.84720.99300.9895N/Ano
Q9ATM5PIP26_MAIZENo assigned EC number0.72790.87800.875N/Ano
P61837PIP11_ARATHNo assigned EC number0.88150.99651.0yesno
Q08451PIP1_SOLLCNo assigned EC number0.87940.97900.9825N/Ano
Q9FF53PIP24_ARATHNo assigned EC number0.70720.89190.8797nono
P61838PIP11_VICFANo assigned EC number0.88150.99651.0N/Ano
P42767PIP1_ATRCANo assigned EC number0.71590.91630.9326N/Ano
Q06611PIP12_ARATHNo assigned EC number0.89190.99651.0yesno
Q9ATN0PIP16_MAIZENo assigned EC number0.82450.98600.9560N/Ano
Q9ZV07PIP26_ARATHNo assigned EC number0.71420.89540.8892nono
Q6K215PIP22_ORYSJNo assigned EC number0.74040.88150.8784nono
Q39196PIP14_ARATHNo assigned EC number0.88880.99650.9965nono
Q41870PIP11_MAIZENo assigned EC number0.83730.99300.9930N/Ano
P29975AQP1_RATNo assigned EC number0.41930.81180.8661yesno
P43286PIP21_ARATHNo assigned EC number0.73380.89190.8919nono
Q7XUA6PIP23_ORYSJNo assigned EC number0.73070.87450.8655nono
Q02013AQP1_MOUSENo assigned EC number0.41530.81180.8661yesno
Q9XF59PIP12_MAIZENo assigned EC number0.88270.99650.9896N/Ano
Q9XF58PIP25_MAIZENo assigned EC number0.72830.89190.8982N/Ano
Q08733PIP13_ARATHNo assigned EC number0.88850.99651.0nono
Q9ATM8PIP22_MAIZENo assigned EC number0.66210.95120.9349N/Ano
P25794PIP2_PEANo assigned EC number0.84420.99650.9896N/Ano
Q9ATM4PIP27_MAIZENo assigned EC number0.71050.89890.8989N/Ano
Q7XLR1PIP26_ORYSJNo assigned EC number0.73350.89190.9078nono
Q9ATM6PIP24_MAIZENo assigned EC number0.73280.88150.8784N/Ano
Q9ATM7PIP23_MAIZENo assigned EC number0.73280.88150.8754N/Ano
Q5R819AQP1_PONABNo assigned EC number0.42100.81530.8698yesno
Q6EU94PIP11_ORYSJNo assigned EC number0.87580.99650.9896nono
Q9ZVX8PIP28_ARATHNo assigned EC number0.71000.93370.9640nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_III0271
SubName- Full=Putative uncharacterized protein; (288 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query287
pfam00230218 pfam00230, MIP, Major intrinsic protein 2e-98
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 2e-77
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 9e-72
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 4e-46
PLN00027252 PLN00027, PLN00027, aquaporin TIP; Provisional 4e-34
PRK05420231 PRK05420, PRK05420, aquaporin Z; Provisional 7e-33
PLN00166250 PLN00166, PLN00166, aquaporin TIP2; Provisional 5e-32
PLN00167256 PLN00167, PLN00167, aquaporin TIP5; Provisional 2e-28
PTZ00016294 PTZ00016, PTZ00016, aquaglyceroporin; Provisional 5e-20
PLN00184296 PLN00184, PLN00184, aquaporin NIP1; Provisional 2e-19
PLN00183274 PLN00183, PLN00183, putative aquaporin NIP7; Provi 2e-19
PLN00182283 PLN00182, PLN00182, putative aquaporin NIP4; Provi 7e-16
PLN00026298 PLN00026, PLN00026, aquaporin NIP; Provisional 5e-15
COG0580 241 COG0580, GlpF, Glycerol uptake facilitator and rel 2e-04
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein Back     alignment and domain information 
 Score =  287 bits (737), Expect = 2e-98
 Identities = 122/231 (52%), Positives = 154/231 (66%), Gaps = 13/231 (5%)

Query: 44  ELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVY 103
           EL+S SF+RA IAEF+AT LF++  V + +GV K        G+  +A AFG  +F LVY
Sbjct: 1   ELRSVSFWRAVIAEFLATLLFVFFGVGSALGVKKL-----YGGLLAVALAFGLALFTLVY 55

Query: 104 CTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLG 163
           CT  ISG H+NPAVTF LL+ R++SL RA++Y++ Q LGA+CGA ++KG   +   +R G
Sbjct: 56  CTGHISGAHLNPAVTFALLVGRRISLLRAIYYIIAQLLGAICGAALLKGV--TNGLQRAG 113

Query: 164 GGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLV 223
           G AN +A G   G     EII TF LVYTVF+ TD  RN    HV   APL IGFAVFL 
Sbjct: 114 GFANSLAPGVNAGQAFVVEIILTFQLVYTVFATTDDPRNGSLGHV---APLAIGFAVFLN 170

Query: 224 HLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYH 274
           HLA  P TG  +NPARS G A++  K   WDDHW++WVGP IGAALAA+ +
Sbjct: 171 HLAGGPYTGASMNPARSFGPAVVLWK---WDDHWVYWVGPLIGAALAALVY 218

MIP (Major Intrinsic Protein) family proteins exhibit essentially two distinct types of channel properties: (1) specific water transport by the aquaporins, and (2) small neutral solutes transport, such as glycerol by the glycerol facilitators. Length = 218
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional Back     alignment and domain information
>gnl|CDD|235453 PRK05420, PRK05420, aquaporin Z; Provisional Back     alignment and domain information
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional Back     alignment and domain information
>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional Back     alignment and domain information
>gnl|CDD|240230 PTZ00016, PTZ00016, aquaglyceroporin; Provisional Back     alignment and domain information
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional Back     alignment and domain information
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional Back     alignment and domain information
>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional Back     alignment and domain information
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 287
KOG0223238 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00184296 aquaporin NIP1; Provisional 100.0
KOG0224316 consensus Aquaporin (major intrinsic protein famil 100.0
PTZ00016294 aquaglyceroporin; Provisional 100.0
COG0580241 GlpF Glycerol uptake facilitator and related perme 100.0
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 100.0
PLN00182283 putative aquaporin NIP4; Provisional 100.0
PLN00167256 aquaporin TIP5; Provisional 100.0
PRK05420231 aquaporin Z; Provisional 100.0
PLN00166250 aquaporin TIP2; Provisional 100.0
PLN00027252 aquaporin TIP; Provisional 100.0
PLN00026298 aquaporin NIP; Provisional 100.0
PLN00183274 putative aquaporin NIP7; Provisional 100.0
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 100.0
TIGR00861216 MIP MIP family channel proteins. processes. Some m 100.0
PLN00026 298 aquaporin NIP; Provisional 99.64
PLN00184 296 aquaporin NIP1; Provisional 99.63
PLN00183 274 putative aquaporin NIP7; Provisional 99.56
PLN00182283 putative aquaporin NIP4; Provisional 99.56
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.53
PLN00166 250 aquaporin TIP2; Provisional 99.53
PLN00167 256 aquaporin TIP5; Provisional 99.5
PRK05420 231 aquaporin Z; Provisional 99.48
PTZ00016 294 aquaglyceroporin; Provisional 99.47
TIGR00861216 MIP MIP family channel proteins. processes. Some m 99.45
PLN00027 252 aquaporin TIP; Provisional 99.44
KOG0223238 consensus Aquaporin (major intrinsic protein famil 99.3
COG0580 241 GlpF Glycerol uptake facilitator and related perme 99.29
KOG0224 316 consensus Aquaporin (major intrinsic protein famil 99.28
PF00230 227 MIP: Major intrinsic protein; InterPro: IPR000425 99.14
COG2116265 FocA Formate/nitrite family of transporters [Inorg 94.88
PRK10805285 formate transporter; Provisional 89.18
PRK11562268 nitrite transporter NirC; Provisional 87.79
TIGR00790239 fnt formate/nitrite transporter. symport. HCO2 - e 87.62
PF01226250 Form_Nir_trans: Formate/nitrite transporter; Inter 83.36
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1e-51  Score=358.14  Aligned_cols=228  Identities=51%  Similarity=0.802  Sum_probs=203.8

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccchhHHHHHHHHHHHHhhhhccCcCCCccChHHHHHHH
Q 023107           43 GELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLL  122 (287)
Q Consensus        43 ~~~~~~~l~r~~~aEf~gTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPavTla~~  122 (287)
                      .+.++++.+|++++||++|++++|++|+++.....   .....+.+.+++++|+.+++.+++++++||||+|||||++++
T Consensus         3 ~~~~~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~---~~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~a~~   79 (238)
T KOG0223|consen    3 GELLSVSFLRALIAEFLATFLFVFAGCGSVVVNPK---YGGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTLAFA   79 (238)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---cCCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHHHHH
Confidence            34567889999999999999999999998776543   123455788999999999999999999999999999999999


Q ss_pred             HhcCCCchhHHHHHHHhhHhHhHhhHHHHhhcCCcchhhcCCCcccccCCCCCCCchhHHHHHHHHHHHHHHH-hccccc
Q 023107          123 LARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS-ATDAKR  201 (287)
Q Consensus       123 l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~l~~~v~~-~~~~~~  201 (287)
                      +.|++++.+++.|+++|++|+++|+.+++.+.+.+ +.....+.+.+.++.+.+|+++.|++.||+|++++++ .+|+|+
T Consensus        80 ~~~~isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~~~  158 (238)
T KOG0223|consen   80 VGGKISLFRAVAYIVAQLLGAIAGAALLKVVTPGQ-YNRKGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATATDPRR  158 (238)
T ss_pred             HhCCCcHHHhHHHHHHHHHHHHHHHHHHheecCcc-cccCCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEeecCCC
Confidence            99999999999999999999999999999999875 3333444567788899999999999999999999999 777766


Q ss_pred             cCCCCCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhCCCCCCCcceehhhhhHHHHHHHHHHHHHHhccC
Q 023107          202 NARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAI  281 (287)
Q Consensus       202 ~~~~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~~~~~~~~~wvy~v~p~~Ga~~a~~~~~~~~~~~  281 (287)
                      .       .+.|+.||+++.+.+++.+++||++|||||+|||+++++   .|+++|+||+||++|+++++++|++++.++
T Consensus       159 ~-------~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv~~---~w~~hwiYwvgP~~Ga~~a~~~y~~v~~~~  228 (238)
T KOG0223|consen  159 S-------ELAPLAIGFSVGLNILAAGPFTGASMNPARSFGPAVVYG---SWDDHWIYWVGPLLGAILAALIYRLVFIPD  228 (238)
T ss_pred             c-------ccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHHHHhc---CCCcEEEEEhhHHHHHHHHHHHHHHhccCc
Confidence            4       478999999999999999999999999999999999985   599999999999999999999999999887


Q ss_pred             CCc
Q 023107          282 PFK  284 (287)
Q Consensus       282 ~~~  284 (287)
                      +.|
T Consensus       229 ~~~  231 (238)
T KOG0223|consen  229 ESE  231 (238)
T ss_pred             ccc
Confidence            444

>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10805 formate transporter; Provisional Back     alignment and domain information
>PRK11562 nitrite transporter NirC; Provisional Back     alignment and domain information
>TIGR00790 fnt formate/nitrite transporter Back     alignment and domain information
>PF01226 Form_Nir_trans: Formate/nitrite transporter; InterPro: IPR000292 Proteins in this entry belong to the Formate-Nitrite Transporter (FNT) family (TC 2 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query287
2b5f_A303 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-111
1z98_A281 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-111
3cn6_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-110
3cn5_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-110
3cll_A300 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-110
1j4n_A271 Crystal Structure Of The Aqp1 Water Channel Length 2e-44
1fqy_A269 Structure Of Aquaporin-1 At 3.8 A Resolution By Ele 1e-43
2d57_A301 Double Layered 2d Crystal Structure Of Aquaporin-4 6e-38
2zz9_A301 Structure Of Aquaporin-4 S180d Mutant At 2.8 A Reso 1e-37
3iyz_A340 Structure Of Aquaporin-4 S180d Mutant At 10.0 A Res 1e-37
3gd8_A223 Crystal Structure Of Human Aquaporin 4 At 1.8 And I 1e-35
3d9s_A266 Human Aquaporin 5 (Aqp5) - High Resolution X-Ray St 3e-32
1ymg_A263 The Channel Architecture Of Aquaporin O At 2.2 Angs 4e-30
2b6o_A263 Electron Crystallographic Structure Of Lens Aquapor 5e-30
1sor_A235 Aquaporin-0 Membrane Junctions Reveal The Structure 2e-28
3m9i_A220 Electron Crystallographic Structure Of Lens Aquapor 1e-27
3llq_A256 Aquaporin Structure From Plant Pathogen Agrobacteri 2e-18
2w1p_A279 1.4 Angstrom Crystal Structure Of P.Pastoris Aquapo 1e-17
1rc2_B231 2.5 Angstrom Resolution X-Ray Structure Of Aquapori 9e-17
2o9f_A234 Crystal Structure Of Aqpz Mutant L170c Length = 234 1e-16
2evu_A246 Crystal Structure Of Aquaporin Aqpm At 2.3a Resolut 2e-16
2o9e_A234 Crystal Structure Of Aqpz Mutant T183c Complexed Wi 3e-16
2o9d_A234 Crystal Structure Of Aqpz Mutant T183c. Length = 23 3e-16
3nk5_A234 Crystal Structure Of Aqpz Mutant F43w Length = 234 4e-16
3nka_A234 Crystal Structure Of Aqpz H174g,T183f Length = 234 1e-14
3nkc_A234 Crystal Structure Of Aqpz F43w,H174g,T183f Length = 4e-14
1ldf_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 2e-12
1fx8_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 8e-12
3ne2_A246 Archaeoglobus Fulgidus Aquaporin Length = 246 2e-10
3c02_A258 X-Ray Structure Of The Aquaglyceroporin From Plasmo 6e-07
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An Open Conformation To 3.9 Resolution Length = 303 Back     alignment and structure 
Iteration: 1

 Score =  397 bits (1019), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 194/260 (74%), Positives = 214/260 (82%), Gaps = 1/260 (0%)
Query: 26  QSDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTV 85
           Q  KDY +PPPAP F+ GELK WSF+RA IAEF+AT LFLYITV TV+G SK    C +V
Sbjct: 13  QHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSV 72
Query: 86  GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVC 145
           G+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGL LARK+SL RA+ YM+ QCLGA+C
Sbjct: 73  GLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAIC 132
Query: 146 GAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARD 205
           G G+VK F     Y + GGGAN VA GY KG  LGAEIIGTFVLVYTVFSATD KR+ARD
Sbjct: 133 GVGLVKAFMKGP-YNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARD 191
Query: 206 SHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFI 265
           SHVPILAPLPIGFAVF+VHLATIPITGTGINPARS GAA+IFN +  WDD WIFWVGPFI
Sbjct: 192 SHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFI 251
Query: 266 GAALAAVYHQIVIRAIPFKS 285
           GAA+AA YHQ V+RA   K+
Sbjct: 252 GAAVAAAYHQYVLRAAAIKA 271
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A Closed Conformation Length = 281 Back     alignment and structure
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e Mutant Length = 304 Back     alignment and structure
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e, S274e Mutant Length = 304 Back     alignment and structure
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e Mutant Length = 300 Back     alignment and structure
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel Length = 271 Back     alignment and structure
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron Crystallography Length = 269 Back     alignment and structure
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4 (Aqp4m23) At 3.2 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution From Electron Micrograph Length = 340 Back     alignment and structure
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its Mechanism Of Conductance Length = 223 Back     alignment and structure
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure Length = 266 Back     alignment and structure
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom Resolution Length = 263 Back     alignment and structure
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore State Length = 263 Back     alignment and structure
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A Closed Water Pore Length = 235 Back     alignment and structure
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp Mip) In E. Coli Polar Lipids Length = 220 Back     alignment and structure
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium Tumerfaciens Length = 256 Back     alignment and structure
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin, Aqy1, In A Closed Conformation At Ph 8.0 Length = 279 Back     alignment and structure
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z Length = 231 Back     alignment and structure
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c Length = 234 Back     alignment and structure
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution Length = 246 Back     alignment and structure
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With Mercury Length = 234 Back     alignment and structure
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c. Length = 234 Back     alignment and structure
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w Length = 234 Back     alignment and structure
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f Length = 234 Back     alignment and structure
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f Length = 234 Back     alignment and structure
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) Mutation W48f, F200t Length = 281 Back     alignment and structure
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) With Substrate Glycerol Length = 281 Back     alignment and structure
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin Length = 246 Back     alignment and structure
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium Falciparum Length = 258 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query287
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 1e-137
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 1e-115
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 1e-107
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 1e-104
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 1e-103
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 1e-102
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 1e-102
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 1e-102
2o9g_A234 Aquaporin Z; integral membrane protein, structural 1e-101
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 1e-98
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 5e-79
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 3e-51
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 2e-49
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure
 Score =  387 bits (997), Expect = e-137
 Identities = 194/270 (71%), Positives = 215/270 (79%), Gaps = 1/270 (0%)

Query: 16  SERQPIGTSAQSDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGV 75
            E      + Q  KDY +PPPAP F+ GELK WSF+RA IAEF+AT LFLYITV TV+G 
Sbjct: 26  KEVSEEAQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGH 85

Query: 76  SKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFY 135
           SK    C +VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGL LARK+ L RA+ Y
Sbjct: 86  SKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVY 145

Query: 136 MVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS 195
           M+ QCLGA+CG G+VK F     Y + GGGAN VA GY KG  LGAEIIGTFVLVYTVFS
Sbjct: 146 MIAQCLGAICGVGLVKAFMKGP-YNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFS 204

Query: 196 ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDD 255
           ATD KR+ARDSHVPILAPLPIGFAVF+VHLATIPITGTGINPARS GAA+IFN +  WDD
Sbjct: 205 ATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDD 264

Query: 256 HWIFWVGPFIGAALAAVYHQIVIRAIPFKS 285
            WIFWVGPFIGAA+AA YHQ V+RA   K+
Sbjct: 265 QWIFWVGPFIGAAVAAAYHQYVLRAAAIKA 294
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query287
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 100.0
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 100.0
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 100.0
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 100.0
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 100.0
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 100.0
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 100.0
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 100.0
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 100.0
2o9g_A234 Aquaporin Z; integral membrane protein, structural 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 100.0
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 100.0
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 99.54
2b6o_A 263 Aquaporin-0, lens fiber major intrinsic protein; a 99.49
3llq_A 256 Aquaporin Z 2; aquaporin tetramer, membrane protei 99.42
2zz9_A 301 Aquaporin-4; water transport, water channel, two-d 99.38
3d9s_A 266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 99.38
3c02_A 258 Aquaglyceroporin; membrane protein, glycerol, wate 99.37
3gd8_A 223 Aquaporin-4; proton exclusion, structural genomics 99.36
2o9g_A 234 Aquaporin Z; integral membrane protein, structural 99.36
1ldf_A 281 Glycerol uptake facilitator protein; glycerol-cond 99.35
1j4n_A 271 Aquaporin 1; membrane protein, channel protein, tr 99.35
3iyz_A 340 Aquaporin-4; water transport, water channel, two-d 99.34
3cn5_A 304 Aquaporin; membrane protein, transmembrane, transp 99.32
2w2e_A 279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 99.3
3kcu_A285 Probable formate transporter 1; TCDB ID 2.A.44.1.1 91.21
3kly_A280 Putative formate transporter 1; membrane protein, 83.34
3tds_E268 Formate/nitrite transporter; membrane protein; HET 80.56
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
Probab=100.00  E-value=8.1e-59  Score=417.51  Aligned_cols=258  Identities=74%  Similarity=1.291  Sum_probs=208.8

Q ss_pred             CCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccchhHHHHHHHHHHHHhhhhcc
Q 023107           27 SDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTA  106 (287)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~l~r~~~aEf~gTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~  106 (287)
                      +.||+++|++.+..+.+|+++++++|++++||+|||+|+|++++++++.....++....+++.+++++|+++++.+|+++
T Consensus        37 ~~~~~~~~~~~~~~~~~e~~~~~~~r~~lAEfiGT~lLv~~g~gsv~~~~~~~~~~~~~g~l~iala~Glav~~~v~~~g  116 (304)
T 3cn5_A           37 HGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTA  116 (304)
T ss_dssp             ------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTTCSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCCccCCCcccccCccccccHHHHHHHHHHHHHHHHHHHHHhHHHeEeccccCCCCCCCceeehhhhhhhhheeeeEee
Confidence            45999999888888999999999999999999999999999999887655433334456788899999999999999999


Q ss_pred             CcCCCccChHHHHHHHHhcCCCchhHHHHHHHhhHhHhHhhHHHHhhcCCcchhhcCCCcccccCCCCCCCchhHHHHHH
Q 023107          107 GISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGT  186 (287)
Q Consensus       107 ~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T  186 (287)
                      ++||||+|||||+++++.|+++|.+++.||+||++||++|+++++.+++++ ++..+.+.+.+.++.+..++++.|+++|
T Consensus       117 ~iSGaHlNPAVTla~~l~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~-~~~~~~g~~~~~~~~s~~~~f~~E~i~T  195 (304)
T 3cn5_A          117 GISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGP-YNQFGGGANSVALGYNKGTALGAEIIGT  195 (304)
T ss_dssp             TTTCCCCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-HHHTTTTCCCCCTTCCHHHHHHHHHHHH
T ss_pred             ccCCCccCcHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhccCcccccCCCccHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999876 5555555555667788889999999999


Q ss_pred             HHHHHHHHHhccccccCCCCCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhCCCCCCCcceehhhhhHHH
Q 023107          187 FVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIG  266 (287)
Q Consensus       187 ~~l~~~v~~~~~~~~~~~~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~~~~~~~~~wvy~v~p~~G  266 (287)
                      |+|+++++.++|+++....++.+.+.|+.||++++++.++.+++||++|||||||||+++++++..|+++|+||++|++|
T Consensus       196 fiLv~~Il~~~d~~~~~~~~~~~~lapl~IGl~V~~~~l~~g~~TG~amNPAR~~GPal~~~~~~~w~~~WvywvgPiiG  275 (304)
T 3cn5_A          196 FVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIG  275 (304)
T ss_dssp             HHHHHHHHHTEEEEEESTTSCCEEECHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHCCHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHhheecCccCCCCcccccchHHHHHHHHHHHHHhccCCCccccChHHHHHHHHHHccCCCcCceEEEeehHHHH
Confidence            99999999988876643322223478999999999999999999999999999999999965446899999999999999


Q ss_pred             HHHHHHHHHHHhccCCCcC
Q 023107          267 AALAAVYHQIVIRAIPFKS  285 (287)
Q Consensus       267 a~~a~~~~~~~~~~~~~~~  285 (287)
                      +++|+++|++++.+.+.|.
T Consensus       276 a~laa~~y~~l~~~~~~~~  294 (304)
T 3cn5_A          276 AAVAAAYHQYVLRAAAIKA  294 (304)
T ss_dssp             HHHHHHHHHTTSCCCC---
T ss_pred             HHHHHHHHHHHhCCCCCCc
Confidence            9999999999998876654
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A Back     alignment and structure
>3kly_A Putative formate transporter 1; membrane protein, channel, structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Vibrio cholerae} PDB: 3klz_A* Back     alignment and structure
>3tds_E Formate/nitrite transporter; membrane protein; HET: PG4 BOG; 1.98A {Clostridium difficile} PDB: 3tdo_A* 3tdr_A* 3te0_A* 3tdx_A* 3te2_A* 3te1_A* 3tdp_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 287
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 2e-55
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 0.002
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 3e-50
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 1e-43
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 0.002
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 9e-42
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-1
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  177 bits (450), Expect = 2e-55
 Identities = 99/239 (41%), Positives = 138/239 (57%), Gaps = 13/239 (5%)

Query: 44  ELKSWSFYRAGIAEFMATFLFLYITVLTVMG----VSKSNTKCSTVGIQGIAWAFGGMIF 99
           E K   F+RA +AEF+A  LF++I++ + +G    +  + T  +      ++ AFG  I 
Sbjct: 4   EFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIA 63

Query: 100 ALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNY 159
            L      ISG H+NPAVT GLLL+ ++S+ RA+ Y++ QC+GA+    ++ G   S   
Sbjct: 64  TLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPD 123

Query: 160 ERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFA 219
                G N +A G   G GLG EIIGT  LV  V + TD +R      +    PL IGF+
Sbjct: 124 N--SLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRD----LGGSGPLAIGFS 177

Query: 220 VFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVI 278
           V L HL  I  TG GINPARS G+++I    H + DHWIFWVGPFIGAALA + +  ++
Sbjct: 178 VALGHLLAIDYTGCGINPARSFGSSVI---THNFQDHWIFWVGPFIGAALAVLIYDFIL 233
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query287
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 100.0
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 100.0
d1ymga1 234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 99.43
d1rc2a_ 231 Aquaporin Z {Escherichia coli [TaxId: 562]} 99.35
d1j4na_ 249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 99.29
d1fx8a_ 254 Glycerol uptake facilitator protein GlpF {Escheric 99.25
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-49  Score=349.37  Aligned_cols=233  Identities=42%  Similarity=0.711  Sum_probs=202.2

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHhhccccCC----CCCCccchhHHHHHHHHHHHHhhhhccCcCCCccChHHH
Q 023107           43 GELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSN----TKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVT  118 (287)
Q Consensus        43 ~~~~~~~l~r~~~aEf~gTf~lv~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPavT  118 (287)
                      .|++++++||++++||+|||+|+|++++++.+.....    ......+.+.+++++|+++++.+++++++||||+|||||
T Consensus         3 ~~~~~~~~wr~~~aEf~gTfllvf~~~gs~~~~~~~~~~~~~~~~~~~~l~ial~~G~~v~~~i~~~g~iSGaH~NPAVT   82 (249)
T d1j4na_           3 SEFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVT   82 (249)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCCSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_pred             hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCccccHHHHHHHHHHHHHHHHHHhhccccceeCchhH
Confidence            5788889999999999999999999999877643321    222345567899999999999999999999999999999


Q ss_pred             HHHHHhcCCCchhHHHHHHHhhHhHhHhhHHHHhhcCCcchhhcCCCcccccCCCCCCCchhHHHHHHHHHHHHHHHhcc
Q 023107          119 FGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATD  198 (287)
Q Consensus       119 la~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~l~~~v~~~~~  198 (287)
                      ++.++.|++++.+.+.|+++|++|+++|+++++.++++..  ....+.+.+.++.+..++++.|+++|++|+++++...|
T Consensus        83 la~~~~g~i~~~~~~~Yi~aQ~lGa~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~E~~~T~~l~~~i~~~~~  160 (249)
T d1j4na_          83 LGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLP--DNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTD  160 (249)
T ss_dssp             HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCT--TCCTTCCCCCTTCCTTGGGHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHhccccchhheeeeeeHHHHHHHHHHhhheeeccccc--cccccceeccCCCchHHHHHHHHHHHHHHHHhheeecc
Confidence            9999999999999999999999999999999999987652  12223445667788899999999999999999999998


Q ss_pred             ccccCCCCCCCchhHHHHHHHHHHHHHHhhcCCcccccHHhhHHHHHHhCCCCCCCcceehhhhhHHHHHHHHHHHHHHh
Q 023107          199 AKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVI  278 (287)
Q Consensus       199 ~~~~~~~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~~~~~~~~~wvy~v~p~~Ga~~a~~~~~~~~  278 (287)
                      ++++...    ...|+.+|+.+....+..++.||+++||||++||+++.+   .|+++|+||++|++|+++|+++|++++
T Consensus       161 ~~~~~~~----~~~p~~ig~~v~~~~~~~~~~tG~~~NPAR~lgp~i~~~---~~~~~wvy~vgP~iGa~la~~~y~~~~  233 (249)
T d1j4na_         161 RRRRDLG----GSGPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITH---NFQDHWIFWVGPFIGAALAVLIYDFIL  233 (249)
T ss_dssp             SSCCCCC----SCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHTT---CCTTTTHHHHHHHHHHHHHHHHHHTTT
T ss_pred             cccCCCC----CCchhHHHHHHHHHHHhcccccCcccChhhhhhHHHhcc---CccCeeeeehHHHHHHHHHHHHHHHhc
Confidence            7665332    457999999999999999999999999999999999864   799999999999999999999999999


Q ss_pred             ccCCCc
Q 023107          279 RAIPFK  284 (287)
Q Consensus       279 ~~~~~~  284 (287)
                      +++..+
T Consensus       234 ~p~~~~  239 (249)
T d1j4na_         234 APRSSD  239 (249)
T ss_dssp             SCCSSC
T ss_pred             CCCCCC
Confidence            876554
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure